Citrus Sinensis ID: 015310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLLM
Secondary Structure (PSIPRED)
cccEEccccccEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHcccccEEEEEccccccccccccHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHcccccEEEEEccccccHHHHccccccccccccccccccccccccHHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHHHcccccEEEccccccHHHHHHHcccccccEEEEccccHHHHHHccccccHHHHHcccccEEEEcccccEEEEEcccHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEcccccEEEEccccccHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHcccccEEEEEccccccHHHHEcccccccccccccccccccccccHHHHHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHcccccccEEEccccHHHHHHHHHHccHHHHHHccEEEEEEccccccEEccccHHHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEccHHHHHHHcc
Coil and Loop (DISEMBL)
mgvvnitknttmICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCinnfqpgkdleiiltkkplpvlivyrpkwagglyegdeHKRLEALHLAEDLGADYVDFELKVASNILgkqysshqsgtrfivscnldcetpseedLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGErglvsqllspkfngalvygslkgtpvlglptveSLRQTYKVEHINADTKVFgliskpvghskgpilhnptfrhvnyngiyvPMFVDDLKKFFstysspdfagfsvgfpyKEAVMKFCDEVHPLAQAIAAVNTIirrpsdgkligyntdcEASITAIEDAIKergykngtasfgsplAGRMFVLAGAGGAGRALAfgaksrgarVVIFDIDFEQSLLLLM
Flexible Loop (DISEMBL)
mgvvnitknttmicaPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNfqpgkdleiiltkkplpvlIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGkqysshqsgTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLLM
Low Complexity Region (SEG)
MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLagaggagralafgaKSRGARVVIFDIDFEQSLLLLM
Disordered region (IsUnstruct)
***VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL**
Disordered Region (DISOPRED)
******TKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLLM
Disordered Region (DISEMBL)
MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLLM
Disordered Region (DISPRO)
*****ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE*************LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLLM
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
Q9SQT8	603	Bifunctional 3-dehydroqui	yes	no	0.995	0.674	0.501	1e-102
C1H8L1	1523	Pentafunctional AROM poly	N/A	no	0.845	0.227	0.278	2e-27
C1FYJ9	1538	Pentafunctional AROM poly	N/A	no	0.853	0.226	0.269	2e-27
C0S433	1603	Pentafunctional AROM poly	N/A	no	0.853	0.217	0.269	2e-27
C5G8R4	1597	Pentafunctional AROM poly	N/A	no	0.828	0.212	0.272	2e-26
C5JKE6	1597	Pentafunctional AROM poly	N/A	no	0.828	0.212	0.270	9e-26
C4JYG6	1580	Pentafunctional AROM poly	N/A	no	0.833	0.215	0.276	2e-25
C5FQ73	1571	Pentafunctional AROM poly	N/A	no	0.863	0.224	0.262	2e-25
C6HCG7	1595	Pentafunctional AROM poly	N/A	no	0.831	0.213	0.281	7e-25
C5PA86	1589	Pentafunctional AROM poly	N/A	no	0.811	0.208	0.272	2e-24

>sp|Q9SQT8|DHQSD_ARATH Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1

 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 205/409 (50%), Positives = 279/409 (68%), Gaps = 2/409 (0%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           +G  +I KN ++ICAP+MA S+++++    +A   GAD+VEIRLD + +F P +DL+ I+
Sbjct: 84  IGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTII 143

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
            K PLP L  YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +       
Sbjct: 144 KKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKK 203

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
               + IVS +    TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  Q
Sbjct: 204 PGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQ 263

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADT 238
           VP I   +GERGL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DT
Sbjct: 264 VPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDT 323

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFP 298
           KV+G+I KPV HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P
Sbjct: 324 KVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIP 383

Query: 299 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 358
           +KEA ++ CDEV PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  + 
Sbjct: 384 HKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSS 443

Query: 359 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407
             S  SPLA +  V+ GAGGAG+ALA+GAK +GA+VVI +  +E++L L
Sbjct: 444 VPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALEL 492

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5

>sp|C1H8L1|ARO1_PARBA Pentafunctional AROM polypeptide OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=PAAG_07102 PE=3 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 176/392 (44%), Gaps = 46/392 (11%)

Query: 27   SNMYQAKAEGADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWA 76
            SN+ +    G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  
Sbjct: 985  SNILKEVTLGSDAVELRVDLLKDPQSDSEIPSVDYVAEQISVLRSRVSVPLVFTIRTKSQ 1044

Query: 77   GGLYEGDEHKRLEALH-LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE 135
            GG +  D +     L+ LA  +G+++VD EL     +L  +  +   G   I++ + D E
Sbjct: 1045 GGRFPDDAYDAALRLYCLAIRMGSEFVDLELSFPEQLL--RTVTEMKGFSKIIASHHDPE 1102

Query: 136  TPSEEDLGYLVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVG 189
                   G  +          D+IKLV     + + A + +  +  +    VP+IA ++G
Sbjct: 1103 GLLSWANGSWIQIYNKALQYGDVIKLVGVAKTLDDNASLKKFKTWAEAKHDVPLIAINMG 1162

Query: 190  ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV--FGLISKP 247
             +G +S++L    NG +   S  G P    P   S R+  K   +  + K   F +I KP
Sbjct: 1163 YKGQLSRIL----NGFMTPVSHPGLPFKAAPGQLSAREIRKGLSLMGEIKAKKFAVIGKP 1218

Query: 248  VGHSKGPILHNPTFRHVNYNGIYVPMFVD---DLKKFFSTYSSPDFAGFSVGFPYKEAVM 304
            V  S+ P +HN  F+ +     Y  +  D   D+K+F     SPDF G SV  P K  +M
Sbjct: 1219 VSSSRSPAMHNALFKQMGLPHTYGRIETDNPEDVKEFIR---SPDFGGASVTIPLKLDIM 1275

Query: 305  KFCDEVHPLAQAIAAVNTIIRRPS-------DGKLIGYNTDCEASITAIEDAIKERGYKN 357
               DE+ P A+ I AVNTI+  P+         +LIG NTD +  +  + DA        
Sbjct: 1276 PLLDEIAPEAEMIGAVNTIVSVPAAPGDKSQSSRLIGRNTDWQGMVRCLSDA-------- 1327

Query: 358  GTASFGSPLAGRMFVLAGAGGAGRALAFGAKS 389
            G  S  +P      ++ G GG  RA  F   S
Sbjct: 1328 GAYSAATPTTSSAGLIIGGGGTARAAIFALNS 1359

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) (taxid: 502779)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C1FYJ9|ARO1_PARBD Pentafunctional AROM polypeptide OS=Paracoccidioides brasiliensis (strain Pb18) GN=PADG_00875 PE=3 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 173/389 (44%), Gaps = 40/389 (10%)

Query: 27   SNMYQAKAEGADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWA 76
            SN+ +    G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  
Sbjct: 985  SNILKEVTLGSDAVELRVDLLKDPQSDSEIPSVDYVAEQISVLRSRVSVPLVFTIRTKSQ 1044

Query: 77   GGLYEGDEHKR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE 135
            GG +  D +   L+   LA  +G+++VD EL     +L  +  +   G   I++ + D E
Sbjct: 1045 GGRFPDDAYDAALQLYRLAIRMGSEFVDLELSFPEQLL--RTVTEMKGFSKIIASHHDPE 1102

Query: 136  TPSEEDLGYLVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVG 189
                   G  +          D+IKLV     + + A + +  +  +    VP+IA ++G
Sbjct: 1103 GLLSWANGSWIQIYNKALQYGDVIKLVGVAKTLDDNASLKKFKTWAEAKHDVPLIAINMG 1162

Query: 190  ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV--FGLISKP 247
             +G +S++L    NG +   S    P    P   S R+  K   +  + K   F +I KP
Sbjct: 1163 YKGQLSRIL----NGFMTPVSHPSLPFKAAPGQLSAREIRKGLSLMGEIKAKKFAVIGKP 1218

Query: 248  VGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC 307
            V  S+ P +HN  F+ +     Y  +  D+++       SPDF G SV  P K  +M   
Sbjct: 1219 VSSSRSPAMHNALFKQMGLPHTYGRIETDNVEDVKEFILSPDFGGASVTIPLKLDIMPLL 1278

Query: 308  DEVHPLAQAIAAVNTIIRRPS-------DGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
            DE+ P A+ I AVNTI+  P+         +LIG NTD +  +  + DA        G  
Sbjct: 1279 DEIAPEAEMIGAVNTIVSVPAAPGDKSQSSRLIGRNTDWQGMVRCLSDA--------GAY 1330

Query: 361  SFGSPLAGRMFVLAGAGGAGRALAFGAKS 389
            S  +P      ++ G GG  RA  F   S
Sbjct: 1331 SAATPTTSSAGLIIGGGGTARAAIFALNS 1359

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Paracoccidioides brasiliensis (strain Pb18) (taxid: 502780)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C0S433|ARO1_PARBP Pentafunctional AROM polypeptide OS=Paracoccidioides brasiliensis (strain Pb03) GN=PABG_02447 PE=3 SV=1

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 173/389 (44%), Gaps = 40/389 (10%)

Query: 27   SNMYQAKAEGADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWA 76
            SN+ +    G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  
Sbjct: 1074 SNILKEVTLGSDAVELRVDLLKDPQSDSEIPSVDYVAEQISVLRSRVSVPLVFTIRTKSQ 1133

Query: 77   GGLYEGDEHKR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE 135
            GG +  D +   L+   LA  +G+++VD EL     +L  +  +   G   I++ + D E
Sbjct: 1134 GGRFPDDAYDAALQLYRLAIRMGSEFVDLELSFPKQLL--RTVTEMKGFSKIIASHHDPE 1191

Query: 136  TPSEEDLGYLVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVG 189
                   G  +          D+IKLV     + + A + +  +  +    VP+IA ++G
Sbjct: 1192 GLLSWANGSWIQIYNKALQYGDVIKLVGVAKTLDDNASLKKFKTWAEAKHDVPLIAINMG 1251

Query: 190  ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV--FGLISKP 247
             +G +S++L    NG +   S    P    P   S R+  K   +  + K   F +I KP
Sbjct: 1252 YKGQLSRIL----NGFMTPVSHPSLPFKAAPGQLSAREIRKGLSLMGEIKAKKFAVIGKP 1307

Query: 248  VGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC 307
            V  S+ P +HN  F+ +     Y  +  D+++       SPDF G SV  P K  +M   
Sbjct: 1308 VSSSRSPAMHNALFKQMGLPHTYGRIETDNVEDVKEFILSPDFGGASVTIPLKLDIMPLL 1367

Query: 308  DEVHPLAQAIAAVNTIIRRPS-------DGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
            DE+ P A+ I AVNTI+  P+         +LIG NTD +  +  + DA        G  
Sbjct: 1368 DEIAPEAEMIGAVNTIVSVPAAPGDKFQSSRLIGRNTDWQGMVRCLSDA--------GAY 1419

Query: 361  SFGSPLAGRMFVLAGAGGAGRALAFGAKS 389
            S  +P      ++ G GG  RA  F   S
Sbjct: 1420 SAATPTTSSAGLIIGGGGTARAAIFALNS 1448

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Paracoccidioides brasiliensis (strain Pb03) (taxid: 482561)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5G8R4|ARO1_AJEDR Pentafunctional AROM polypeptide OS=Ajellomyces dermatitidis (strain ER-3 / ATCC MYA-2586) GN=BDCG_01028 PE=3 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 173/385 (44%), Gaps = 46/385 (11%)

Query: 36   GADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
            G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  GG +  D +
Sbjct: 1076 GSDAVELRVDLLKDPQSDSEIPSVDYVAEQISVLRSRTSVPLVFTIRTKAQGGRFPDDAY 1135

Query: 86   KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY 144
               L+   LA  +G+++VD E+     +L  +  +   G   I++ + D +       G 
Sbjct: 1136 DAALQLYRLAIRMGSEFVDLEISFPEQLL--RTVTEMKGFSKIIASHHDPKGELSWANGS 1193

Query: 145  LVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVGERGLVSQLL 198
             +          D+IKLV     + + A + +  +  +    VPIIA ++G++G +S++L
Sbjct: 1194 WIQFYNKALQYGDVIKLVGVARSLDDNASLKKFKTWAEEKHDVPIIAINMGDKGQLSRML 1253

Query: 199  SPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINAD--TKVFGLISKPVGHSKGPIL 256
                NG +   S    P    P   S R+  K   +  +  +K F +I  PV  S+ P +
Sbjct: 1254 ----NGFMTPVSHPSLPFKAAPGQLSAREIRKGLSLIGEIKSKKFAVIGNPVSASRSPAM 1309

Query: 257  HNPTFRHVNYNGIYVPMFVDD---LKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPL 313
            HN  FR +    IY  +  +D   +KKF     SPDF G S+  P K  +M   DE+ P 
Sbjct: 1310 HNALFRQMGLPHIYGTLETEDPEIVKKFIR---SPDFGGASITIPLKLDIMPLLDEIAPE 1366

Query: 314  AQAIAAVNTIIRRP-------SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPL 366
            A +I AVNTI+  P          +LIG NTD +  +  + DA        G     +P 
Sbjct: 1367 AVSIGAVNTIVCAPPAPDDQSQAPRLIGRNTDWQGMVRCLSDA--------GAYPAATPT 1418

Query: 367  AGRMFVLAGAGGAGRALAFGAKSRG 391
                 ++ G GG  RA  F  +S G
Sbjct: 1419 TTSAGLVIGGGGTARAAIFALQSMG 1443

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Ajellomyces dermatitidis (strain ER-3 / ATCC MYA-2586) (taxid: 559297)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5JKE6|ARO1_AJEDS Pentafunctional AROM polypeptide OS=Ajellomyces dermatitidis (strain SLH14081) GN=BDBG_02999 PE=3 SV=1

 Score =  118 bits (295), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 172/385 (44%), Gaps = 46/385 (11%)

Query: 36   GADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
            G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  GG +  D +
Sbjct: 1076 GSDAVELRVDLLKDPQSDSEIPSVDYVAEQISVLRSRTSVPLVFTIRTKAQGGRFPDDAY 1135

Query: 86   KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY 144
               L+   LA  +G+++VD E+     +L  +  +   G   I++ + D +       G 
Sbjct: 1136 DAALQLYRLAIRMGSEFVDLEISFPEQLL--RTVTEMKGFSKIIASHHDPKGELSWANGS 1193

Query: 145  LVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVGERGLVSQLL 198
             +          D+IKLV     + + A + +  +  +    VPIIA ++G++G +S++L
Sbjct: 1194 WIQFYNKALQYGDVIKLVGVARSLDDNASLKKFKTWAEEKHDVPIIAINMGDKGQLSRML 1253

Query: 199  SPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINAD--TKVFGLISKPVGHSKGPIL 256
                NG +   S    P    P   S R+  K   +  +  +K F +I  PV  S+ P +
Sbjct: 1254 ----NGFMTPVSHPSLPFKAAPGQLSAREIRKGLSLIGEIKSKKFAVIGNPVSASRSPAM 1309

Query: 257  HNPTFRHVNYNGIYVPMFVDD---LKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPL 313
            HN  FR +     Y  +  +D   +KKF     SPDF G S+  P K  +M   DE+ P 
Sbjct: 1310 HNALFRQMGLPHTYGTLETEDPEIVKKFIR---SPDFGGASITIPLKLDIMPLLDEIAPE 1366

Query: 314  AQAIAAVNTIIRRP-------SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPL 366
            A +I AVNTI+  P          +LIG NTD +  +  + DA        G     +P 
Sbjct: 1367 AVSIGAVNTIVCAPPAPDDQSQAPRLIGRNTDWQGMVRCLSDA--------GAYPAATPT 1418

Query: 367  AGRMFVLAGAGGAGRALAFGAKSRG 391
                 ++ G GG  RA  F  +S G
Sbjct: 1419 TTSAGLVIGGGGTARAAIFALQSMG 1443

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Ajellomyces dermatitidis (strain SLH14081) (taxid: 559298)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C4JYG6|ARO1_UNCRE Pentafunctional AROM polypeptide OS=Uncinocarpus reesii (strain UAMH 1704) GN=UREG_07217 PE=3 SV=1

 Score =  117 bits (293), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 173/383 (45%), Gaps = 42/383 (10%)

Query: 36   GADVVEIRLDCI-----NNFQPGKD-----LEIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
            G+D VE+R+D +     ++  P  D     + I+ ++  +P++   R K  GG +  D H
Sbjct: 1067 GSDAVELRVDLLVDPSSSSEMPSVDYVAEQISILRSRVSVPLVFTIRTKSQGGRFPDDAH 1126

Query: 86   KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY 144
               L+   LA  +G+++VD E+     +L  +  +   G   I++ + D         G 
Sbjct: 1127 NAALDLYRLAIRMGSEFVDLEVTFPEYVL--RAVTEMKGVSKIIASHHDVANRLSWRNGS 1184

Query: 145  LVS--RMQATGADIIKLVFSVNDITE-IA----RIFQLLSHCQVPIIAYSVGERGLVSQL 197
                        DIIKLV   + + + IA    +I+   +H  +P+IA ++GERG +S++
Sbjct: 1185 WTQFYNKALQYGDIIKLVGIASQLDDNIALREFKIWAKKAH-DIPVIAINMGERGRLSRI 1243

Query: 198  LSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHI--NADTKVFGLISKPVGHSKGPI 255
            L    NG +   S    P    P   S ++  +   +    ++K F ++ KP+  S+ P 
Sbjct: 1244 L----NGFMTPVSHPKLPFKAAPGQLSAKEIREGLSLMGEIESKKFAIVGKPISASRSPA 1299

Query: 256  LHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ 315
            LHN  F  V    +Y  +  DD++       +PDF G S+  P K  +M   DE+ P A+
Sbjct: 1300 LHNALFADVGLPHVYGRLETDDVQNVKDLIHAPDFGGASITIPLKLDIMPLLDEIAPEAK 1359

Query: 316  AIAAVNTII---RRPSDGK----LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAG 368
             I AVNTI+   R P D K    LIGYNTD +  +  +       G     ++   P  G
Sbjct: 1360 VIGAVNTIVPAPREPGDVKKGPRLIGYNTDWQGMVQCL-----RHGGAVSPSTSNDPAPG 1414

Query: 369  RMFVLAGAGGAGRALAFGAKSRG 391
               ++ G GG  RA      S G
Sbjct: 1415 ---LVIGGGGTARAAIHALHSMG 1434

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Uncinocarpus reesii (strain UAMH 1704) (taxid: 336963)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5FQ73|ARO1_ARTOC Pentafunctional AROM polypeptide OS=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) GN=MCYG_04845 PE=3 SV=1

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 169/388 (43%), Gaps = 35/388 (9%)

Query: 24   QVLSNMYQAKAEGADVVEIRLDCINNFQP----------GKDLEIILTKKPLPVLIVYRP 73
            Q+ +++ +A   G+D +E+R+D + +              + +  + +    P++   R 
Sbjct: 1064 QLSADILRAATFGSDAIELRVDLLKDPSSTSGVPSVGYVAEQMSFLRSHASQPLIFTIRT 1123

Query: 74   KWAGGLYEGDE-HKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNL 132
            K  GG +  D   K LE   LA  +G+++VD EL   +++L     +   G   I++ + 
Sbjct: 1124 KAQGGQFPDDAVDKALELYKLAIRMGSEFVDLELSFPNDLL--HAVTEMKGFSKIIASHH 1181

Query: 133  DCETPSEEDLGYLVSRMQAT--GADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAY 186
            D  +      G  +          DIIKL+       +   + Q  S  +    VPIIA 
Sbjct: 1182 DVNSQLSWSNGSWIQYYNKALQHGDIIKLIGVAKTFEDNMALQQFKSWAEKSYPVPIIAI 1241

Query: 187  SVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISK 246
            ++G +G +S++L+ +F   + + +L      G  + + +RQ   +     D K F L  K
Sbjct: 1242 NMGNKGRLSRILN-RFMTPVSHPALPFKAAPGQVSAKDIRQALTLMG-ELDAKKFALFGK 1299

Query: 247  PVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKF 306
            P+  S+ P LHN  F    +   Y  +  D  +       S DF G SV  P KE +M  
Sbjct: 1300 PISASRSPALHNALFTQAGFPHDYGLLETDKAENVEKFIRSDDFGGASVTIPLKEQIMGL 1359

Query: 307  CDEVHPLAQAIAAVNTIIRRPSDG---KLIGYNTDCEASITAIEDAIKERGYKNGTASFG 363
             DE+ P A+ I AVNTI+     G   +LIGYNTD +     ++DA        G     
Sbjct: 1360 LDEISPEAKIIGAVNTIVPITVSGRPPRLIGYNTDWQGMARCLKDA--------GAICSN 1411

Query: 364  SPLAGRMFVLAGAGGAGRALAFGAKSRG 391
            +   G   +  G+GG  RA  +   S G
Sbjct: 1412 N---GESALTIGSGGTARAAIYSLHSMG 1436

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) (taxid: 554155)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C6HCG7|ARO1_AJECH Pentafunctional AROM polypeptide OS=Ajellomyces capsulata (strain H143) GN=HCDG_03716 PE=3 SV=1

 Score =  115 bits (287), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 173/384 (45%), Gaps = 44/384 (11%)

Query: 36   GADVVEIRLDCINNFQ-----PGKD-----LEIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
            G+D VE+R+D + + Q     P  D     + ++ ++  +P++   R K  GG +  D +
Sbjct: 1076 GSDAVELRVDLLKDPQSDNEIPSVDYVAEQISVLRSRASVPLVFTIRTKGQGGRFPDDAY 1135

Query: 86   KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY 144
               L+   LA  +G+++VD E+     +L  +  +   G   I++ + D +       G 
Sbjct: 1136 DAALQLYRLAVRMGSEFVDLEISFPEQLL--RTVTEMKGFSKIIASHHDPKGQLSWVNGS 1193

Query: 145  LVS--RMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVGERGLVSQLL 198
             +          D+IKLV     I +   + +  +  +    VPIIA ++G++G +S++L
Sbjct: 1194 WIQFYNKALQYGDVIKLVGVARSIDDNISLKKFKTWAEEKHNVPIIAINMGDKGQLSRML 1253

Query: 199  SPKFNGALVYGSLKGTPVLGLPTVESLRQTYK----VEHINADTKVFGLISKPVGHSKGP 254
                NG +   S    P    P   S R+  K    +  I A  K F +I  PV  S+ P
Sbjct: 1254 ----NGFMTPVSHPSLPFKAAPGQLSAREIRKGLSLIGEIKA--KKFAVIGNPVSASRSP 1307

Query: 255  ILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLA 314
             +HN  FR +     Y  +  D+ +       SPDF G SV  P K ++M   DE+ P A
Sbjct: 1308 AMHNTLFRQMGLPHTYGTLETDNPEVAKEFIRSPDFGGASVTIPLKLSIMPLLDEIAPEA 1367

Query: 315  QAIAAVNTIIRRP--SDGK-----LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLA 367
             +I AVNTI+  P   DGK     LIG+NTD +  +  + DA         TAS G    
Sbjct: 1368 MSIGAVNTIVCAPPAPDGKSQTPRLIGHNTDWQGMVRCLSDAGAYAAATPTTASAG---- 1423

Query: 368  GRMFVLAGAGGAGRALAFGAKSRG 391
                ++ G GG  RA  F  ++ G
Sbjct: 1424 ----LVIGGGGTARAAIFALQNMG 1443

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Ajellomyces capsulata (strain H143) (taxid: 544712)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|C5PA86|ARO1_COCP7 Pentafunctional AROM polypeptide OS=Coccidioides posadasii (strain C735) GN=CPC735_008210 PE=3 SV=1

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 167/374 (44%), Gaps = 42/374 (11%)

Query: 36   GADVVEIRLDCINNFQPGKDL----------EIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
            G+D VE+R+D + +     D+           ++ ++  LP++   R K  GG +  D H
Sbjct: 1071 GSDAVELRVDLLVDPSSANDIPSVDYVAEQISMLRSRVSLPLVFTIRTKSQGGRFPDDAH 1130

Query: 86   KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE---TPSEED 141
               L+   LA  +G+++VD E+    +IL  +  +   G   I++ + D     + +   
Sbjct: 1131 DAALDLYRLAVRMGSEFVDLEVTFPEHIL--RAVTEMKGFSKIIASHHDVSGSLSWANGS 1188

Query: 142  LGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAYSVGERGLVSQL 197
             G   ++    G DIIKLV     + +   + +  +  Q    +P+IA ++GE+G +S++
Sbjct: 1189 WGQFYNKALQYG-DIIKLVGVAKCLDDNIALRKFKTWAQDAHEIPVIAINMGEKGRLSRI 1247

Query: 198  LSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHI--NADTKVFGLISKPVGHSKGPI 255
            L    NG +   S    P    P   S +   K   +    + + F +  KPV  S+ P 
Sbjct: 1248 L----NGFMTPVSHPKLPFKAAPGQLSAQDIRKGLSLMGEIEPRKFAIFGKPVSASRSPA 1303

Query: 256  LHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ 315
            +HN  F  V     Y  +  D+++       +PDF G SV  P K  +M   DE+ P AQ
Sbjct: 1304 MHNALFAQVGLPHAYSRLETDNVEDVREFIHAPDFGGASVTIPLKLDIMPLLDEISPEAQ 1363

Query: 316  AIAAVNTII---RRPSD----GKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAG 368
             I AVNTI+   R P D     +LIGYNTD +  +  +      R  K  + SF      
Sbjct: 1364 VIGAVNTIVPIPRGPGDMTGYPRLIGYNTDWQGMVRCL------RHGKAISPSFADTAVP 1417

Query: 369  RMFVLAGAGGAGRA 382
             + +  G GG  RA
Sbjct: 1418 GLVI--GGGGTARA 1429

The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis.

Coccidioides posadasii (strain C735) (taxid: 222929)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
147837952	1071	hypothetical protein VITISV_034026 [Viti	0.970	0.370	0.723	1e-166
255542470	519	shikimate dehydrogenase, putative [Ricin	0.995	0.784	0.712	1e-165
225451144	519	PREDICTED: bifunctional 3-dehydroquinate	0.987	0.778	0.720	1e-165
224130894	518	dehydroquinate dehydratase/ shikimate de	0.985	0.777	0.702	1e-163
224125426	518	dehydroquinate dehydratase/ shikimate de	0.985	0.777	0.690	1e-160
356504076	524	PREDICTED: bifunctional 3-dehydroquinate	0.987	0.770	0.687	1e-155
57920902	521	3-dehydroquinate dehydratase / shikimate	0.985	0.773	0.675	1e-150
356573042	524	PREDICTED: LOW QUALITY PROTEIN: bifuncti	0.987	0.770	0.638	1e-144
255559348	515	shikimate dehydrogenase, putative [Ricin	0.968	0.768	0.570	1e-119
116787099	514	unknown [Picea sitchensis]	0.963	0.766	0.556	1e-116

>gi|147837952|emb|CAN60563.1| hypothetical protein VITISV_034026 [Vitis vinifera]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 293/405 (72%), Positives = 340/405 (83%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           M  V + K  TMIC PLM QSVEQ++ +M++AK EGAD+VE+RLD INNF P +DLEIIL
Sbjct: 1   MDDVGVLKKETMICTPLMGQSVEQMVRDMHKAKVEGADLVEVRLDYINNFHPQQDLEIIL 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
             KPLPV+IVYRPKW GG YEGDEH RLEALHLAE LGADY+DFELKVAS+ LGKQ    
Sbjct: 61  RNKPLPVMIVYRPKWEGGQYEGDEHSRLEALHLAEKLGADYIDFELKVASDFLGKQKMDQ 120

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
            S +R IVSC +D  TP  EDL   V+ +Q+TGAD+IKLV +  +ITEI +IF LLSHCQ
Sbjct: 121 HSSSRTIVSCYVDGVTPPIEDLICRVALLQSTGADMIKLVINATNITEITKIFHLLSHCQ 180

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV 240
           +P+IAYS+G+RG +SQ+L  KF G LVYGS++G+PV GLPT+ESLR+ YKV++IN DTKV
Sbjct: 181 MPLIAYSIGDRGFMSQILCRKFGGFLVYGSMEGSPVAGLPTLESLREAYKVQYINKDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYK 300
           FGLISKPVGHSKGPILHNP FRHVNYNGIYVPM VDDLK+FFS YSSPDFAGFSVG PYK
Sbjct: 241 FGLISKPVGHSKGPILHNPAFRHVNYNGIYVPMLVDDLKEFFSIYSSPDFAGFSVGIPYK 300

Query: 301 EAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
           EAV  FCDE+HPLAQ+I AVNTI+RRPSDGKLIGYNTDCEASITAIEDA++ERG  NG A
Sbjct: 301 EAVTGFCDELHPLAQSIGAVNTIMRRPSDGKLIGYNTDCEASITAIEDALRERGLPNGEA 360

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL 405
              SPL G+ FVL GAGGAGRALAFGA+SRGA++VIFD+DFE+S+
Sbjct: 361 PLNSPLTGKQFVLVGAGGAGRALAFGARSRGAQLVIFDLDFEKSI 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542470|ref|XP_002512298.1| shikimate dehydrogenase, putative [Ricinus communis] gi|223548259|gb|EEF49750.1| shikimate dehydrogenase, putative [Ricinus communis]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 290/407 (71%), Positives = 348/407 (85%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           MG V    ++ M+C PLMAQSVEQ++S+MY AK +GADVVE+RLD I+NFQP +DL+ IL
Sbjct: 1   MGSVGELTSSVMVCTPLMAQSVEQMISDMYNAKTQGADVVEVRLDYIDNFQPPQDLQAIL 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
             KPLPV+IVYRPK  GGLYEGDE  RLEAL LA  LGADYVDFELKVAS+++G+   +H
Sbjct: 61  RNKPLPVIIVYRPKSEGGLYEGDEPTRLEALRLAYVLGADYVDFELKVASDLIGELKGTH 120

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
            +G++ IVSC ++ + P++E+L  LV+ MQATGADIIKLV + N+ITE+ RIF L+ HCQ
Sbjct: 121 HTGSKVIVSCYVNGDMPTKENLSQLVASMQATGADIIKLVSTANNITELDRIFHLILHCQ 180

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV 240
           VPIIAYSVGERGL+SQLLSPKF G+L+YGS++G+ + GLPT++SLR+ YKV +IN+DTKV
Sbjct: 181 VPIIAYSVGERGLISQLLSPKFGGSLLYGSMEGSSIPGLPTLDSLREAYKVAYINSDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYK 300
           FGL+SKPV HSKGP+LHNPTFRH NYNG YVPMFVDDLK+FFS YSSPDFAGFSVGFPYK
Sbjct: 241 FGLVSKPVSHSKGPLLHNPTFRHANYNGTYVPMFVDDLKEFFSVYSSPDFAGFSVGFPYK 300

Query: 301 EAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
           EAV++FCDEVHPLA++I AVNTIIRRP DGKLIG+NTDCEA+ITAIEDA+KE+GY +G  
Sbjct: 301 EAVVEFCDEVHPLAKSIGAVNTIIRRPGDGKLIGHNTDCEAAITAIEDALKEQGYMDGRT 360

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407
           S  SPL GR FVL GAGGAGRALAFGAKSRGAR+VIFDID E++  L
Sbjct: 361 SSNSPLTGRQFVLVGAGGAGRALAFGAKSRGARIVIFDIDLERAKFL 407

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451144|ref|XP_002270055.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic [Vitis vinifera] gi|298204989|emb|CBI34296.3| unnamed protein product [Vitis vinifera]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 291/404 (72%), Positives = 339/404 (83%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           M  V + K  TMIC PLM QSVEQ++ +M++AK EGAD+VE+RLD INNF P +DLEIIL
Sbjct: 1   MDDVGVLKKETMICTPLMGQSVEQMVRDMHKAKVEGADLVEVRLDYINNFHPQQDLEIIL 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
             KPLPV+IVYRPKW GG YEGDEH RLEALHLAE LGADY+DFELKVAS+ LGKQ    
Sbjct: 61  RNKPLPVMIVYRPKWEGGQYEGDEHSRLEALHLAEKLGADYIDFELKVASDFLGKQKMDQ 120

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
            S +R IVSC +D  TP  EDL   V+ +Q+TGAD+IKLV +  +ITEI +IF LLSHCQ
Sbjct: 121 HSSSRTIVSCYVDGVTPPIEDLICRVALLQSTGADMIKLVINATNITEITKIFHLLSHCQ 180

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV 240
           +P+IAYS+G+RG +SQ+L  KF G LVYGS++G+PV GLPT+ESLR+ YKV++IN DTKV
Sbjct: 181 MPLIAYSIGDRGFMSQILCRKFGGFLVYGSMEGSPVAGLPTLESLREAYKVQYINKDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYK 300
           FGLISKPVGHSKGPILHNP FRHVNYNGIYVPM VDDLK+FFS YSSPDFAGFSVG PYK
Sbjct: 241 FGLISKPVGHSKGPILHNPAFRHVNYNGIYVPMLVDDLKEFFSIYSSPDFAGFSVGIPYK 300

Query: 301 EAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
           EAV  FCDE+HPLAQ+I AVNTI+RRPSDGKLIGYNTDCEASITAIEDA++ERG  NG A
Sbjct: 301 EAVTGFCDELHPLAQSIGAVNTIMRRPSDGKLIGYNTDCEASITAIEDALRERGLPNGEA 360

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS 404
              SPL G+ FVL GAGGAGRALAFGA+SRGA++VIFD+DF+++
Sbjct: 361 PLNSPLTGKQFVLVGAGGAGRALAFGARSRGAQLVIFDLDFDRA 404

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130894|ref|XP_002328402.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222838117|gb|EEE76482.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 284/404 (70%), Positives = 344/404 (85%), Gaps = 1/404 (0%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           MG V +  N+ M+CAPLMAQSVEQ++ +M+ AKA+GADVVE+RLDCI+ FQP +DLE I+
Sbjct: 1   MGSVGVLTNSVMVCAPLMAQSVEQMVIDMHSAKAQGADVVEVRLDCISKFQPRQDLETII 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
             KPLPV+IVYRPKW GG YEGDEH+RLEAL LA DLGADY+D ELKVAS ++ +  + H
Sbjct: 61  RNKPLPVIIVYRPKWEGGQYEGDEHRRLEALRLANDLGADYIDLELKVASELIWELKNKH 120

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
           Q+G + IVS  L+  TPS+E+L +LV+ MQAT ADIIK+V + +DITE+ RIF LLSHC+
Sbjct: 121 QNGGKVIVSSYLNGATPSKENLSHLVATMQATEADIIKVVSNADDITEMERIFHLLSHCE 180

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV 240
           VP +AYSVGERGL+SQLL PKF GALVYGS++G  + GLPT++SLR+ YKV+ IN+DTKV
Sbjct: 181 VPAVAYSVGERGLISQLLCPKFGGALVYGSMEGNSIPGLPTLDSLREAYKVDCINSDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYK 300
           FGL+SKPVGHSKGP+LHNPT RHVN+NGIYVPMFVDDLKKFF  Y+SPDFAG+SVGFPYK
Sbjct: 241 FGLVSKPVGHSKGPLLHNPTLRHVNFNGIYVPMFVDDLKKFFDVYASPDFAGYSVGFPYK 300

Query: 301 EAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
           EAV++FCDEVHPLA+ I AVNTIIRRP DGKLIGYNTDCE SITAIEDA++++ Y NG  
Sbjct: 301 EAVVQFCDEVHPLAKCIGAVNTIIRRPCDGKLIGYNTDCEGSITAIEDALRDQKYVNGR- 359

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS 404
           S  SPLAG+ FV+ GAGGAGRA+A GAKSRGAR++IFDID E++
Sbjct: 360 SLNSPLAGKQFVVVGAGGAGRAIAVGAKSRGARLIIFDIDLERA 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125426|ref|XP_002319583.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222857959|gb|EEE95506.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/404 (69%), Positives = 341/404 (84%), Gaps = 1/404 (0%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           MG   I  N+TM+CAPLMA+SVEQ++ +M  A+A+GAD VE+RLD IN+FQP +DLE I+
Sbjct: 1   MGRAGILANSTMVCAPLMARSVEQMVIDMQSAEAQGADAVEVRLDYINSFQPSQDLETII 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
             KPLPV+IVYRP+W GG YEGDEH RLEAL LA +LGADY+D ELKVAS+++ +  + H
Sbjct: 61  RNKPLPVIIVYRPRWEGGQYEGDEHTRLEALRLAHELGADYIDVELKVASDLVREVKNKH 120

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
           Q+G + IVS  L   TPS+EDL +LV+ MQAT ADIIK+V + NDITE+ RIF LLSH Q
Sbjct: 121 QTGGKVIVSSYLSGATPSKEDLSHLVASMQATKADIIKVVSNANDITELDRIFHLLSHMQ 180

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV 240
           VP +AYS+GERGL+SQLL PKF GALVYG+++G  + GLPT++SLR+ YKVE+IN+DTKV
Sbjct: 181 VPAVAYSLGERGLISQLLCPKFGGALVYGAMEGNSIPGLPTLDSLREAYKVENINSDTKV 240

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYK 300
           FGL+SKPV HSKGPILHNP FRH N+NGIYVPMFVDDLK+FF  Y+SPDFAG+SVGFPYK
Sbjct: 241 FGLVSKPVSHSKGPILHNPAFRHANFNGIYVPMFVDDLKEFFEVYASPDFAGYSVGFPYK 300

Query: 301 EAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTA 360
           EAV++FCDEVHPLA++I AVNTIIR+PSDGKLIGYNTDCE SI +IEDA+K++ Y NG A
Sbjct: 301 EAVVQFCDEVHPLAKSIGAVNTIIRKPSDGKLIGYNTDCEGSIASIEDALKDQRYING-A 359

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS 404
           S  SPLAG+ FV+ GAGGAGRA+A GAKSRGARV+IFDID +++
Sbjct: 360 SLNSPLAGKQFVVVGAGGAGRAIAVGAKSRGARVIIFDIDLDRA 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504076|ref|XP_003520825.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Glycine max]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 281/409 (68%), Positives = 331/409 (80%), Gaps = 5/409 (1%)

Query: 1   MGVVNITKNTTMICAPLMAQ---SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE 57
           MG   + K++ M+CA +      S EQ+++ M+QAKAEGAD+VE+RLDCI NF    DL+
Sbjct: 1   MGSNQVWKHSVMVCAAITTHQYVSAEQIVNGMHQAKAEGADIVELRLDCITNFHSHHDLK 60

Query: 58  IILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNI--LGK 115
           IIL  KPLPVLIV RPKW GGLYEGDE+KRLEAL LA +L AD++D ELK AS +  L +
Sbjct: 61  IILQNKPLPVLIVNRPKWEGGLYEGDENKRLEALQLAVELSADFIDVELKAASCLPTLVE 120

Query: 116 QYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQL 175
              +H S  + IVSC +D  TP  E L  LV  MQATGADIIKLV    DITEI RIF L
Sbjct: 121 HMRNHNSHGKIIVSCYVDGTTPPHEVLLQLVELMQATGADIIKLVTLAADITEIKRIFSL 180

Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 235
             +CQVP+IAYSVGERGL+SQLLSPKF G  VYGSL G P+ GLP+++S+++ YK+EH+N
Sbjct: 181 FLYCQVPLIAYSVGERGLISQLLSPKFGGFFVYGSLAGNPIPGLPSLDSIQEAYKLEHVN 240

Query: 236 ADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSV 295
           ADTKVFGLISKPV HS+GPILHNP+F+ VNYNGIYVPMFVDDLKKFFSTY SPDF+GFSV
Sbjct: 241 ADTKVFGLISKPVSHSRGPILHNPSFKDVNYNGIYVPMFVDDLKKFFSTYPSPDFSGFSV 300

Query: 296 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 355
           G PYKE V++FCDEVHPLAQ+I AVNTIIRRP DGKL+GYNTDCEA+ITAIEDA+ E G 
Sbjct: 301 GIPYKEEVLRFCDEVHPLAQSIGAVNTIIRRPRDGKLVGYNTDCEAAITAIEDALIEHGC 360

Query: 356 KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS 404
            +G AS GSPLAGR+FVL GAGGAG+ALAFGAKSRGAR+VIFDIDF+++
Sbjct: 361 NDGEASLGSPLAGRLFVLVGAGGAGKALAFGAKSRGARLVIFDIDFDRA 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57920902|gb|AAS90324.2| 3-dehydroquinate dehydratase / shikimate dehydrogenase isoform 2 [Nicotiana tabacum]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 275/407 (67%), Positives = 327/407 (80%), Gaps = 4/407 (0%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
           MG V + KN+ M+CAPLMA SVEQ++  M QAKA+GAD+VEIRLD INNFQP KDL+++L
Sbjct: 1   MGSVGLLKNSAMVCAPLMAPSVEQLVHGMLQAKAQGADLVEIRLDGINNFQPQKDLQVLL 60

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDE---HKRLEALHLAEDLGADYVDFELKVASNILGKQY 117
              PLPVLIVYRP W G  +E D+   HK+LE L  A++LGADY++ +LK+AS+   K+ 
Sbjct: 61  NNNPLPVLIVYRPIWEGNEFEEDDDHIHKQLEVLRWAKELGADYIELDLKIASDFTKKEK 120

Query: 118 SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS 177
               SG + I SC +D  T S+EDL  +V+ MQ+TGADI+K+V + NDITE+ ++F LLS
Sbjct: 121 PRWSSGCKVIASCFVDNVT-SKEDLSQVVAHMQSTGADILKIVTNANDITELEKMFHLLS 179

Query: 178 HCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINAD 237
           HCQVP+IAYS+GERGL+SQLL PKF   LVYGSL    V GLPT+ SLRQ Y V+ ++ D
Sbjct: 180 HCQVPLIAYSLGERGLISQLLGPKFGSVLVYGSLDCNAVPGLPTLGSLRQAYGVDFMDTD 239

Query: 238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGF 297
           TKVFGLISKPVGHSKGPILHNPTFRHV YNGIYVPMFVDDLK+FF  YSSPDFAGFSVG 
Sbjct: 240 TKVFGLISKPVGHSKGPILHNPTFRHVGYNGIYVPMFVDDLKEFFRVYSSPDFAGFSVGI 299

Query: 298 PYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKN 357
           PYKEAV+ FCDEV PLA++I AVNTII+RP DGKLIGYNTDCEASITAIEDA+K  G  N
Sbjct: 300 PYKEAVVSFCDEVDPLAKSIGAVNTIIQRPCDGKLIGYNTDCEASITAIEDALKVNGLTN 359

Query: 358 GTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS 404
           G A   SPLAG++FVL GAGGAGRALAFGAKSR A +VIFDIDF+++
Sbjct: 360 GAAFLPSPLAGKLFVLVGAGGAGRALAFGAKSRRAEIVIFDIDFDRA 406

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573042|ref|XP_003554674.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Glycine max]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/409 (63%), Positives = 321/409 (78%), Gaps = 5/409 (1%)

Query: 1   MGVVNITKNTTMICAPLMAQ---SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE 57
           MG     K++ M+CAP+  Q   SVEQ+ ++MYQAKAE AD+VE+RLDCI NF P  +L+
Sbjct: 1   MGSNQDWKHSVMVCAPITTQQSVSVEQIANDMYQAKAEDADIVEVRLDCITNFHPXHELK 60

Query: 58  IILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNI--LGK 115
            IL  KPLPVLIV +PKW GGLYEGDE+ +LEAL LA +LGAD+++ +LK AS +  L +
Sbjct: 61  TILQNKPLPVLIVNQPKWEGGLYEGDENMQLEALQLAVELGADFIEVQLKAASCLPTLVE 120

Query: 116 QYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQL 175
              +H S  + IVSC +D   P +E+L  LV  MQ T ADIIKLV    DITEI +IF L
Sbjct: 121 HKRNHNSHGKIIVSCYVDGIIPPQEELLQLVELMQGTEADIIKLVTHAADITEIIKIFSL 180

Query: 176 LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 235
             +CQVP+IAYSVGERGL+SQLLS KF G  VY SL G P+ GLP+++++++ YK+EH+ 
Sbjct: 181 FPYCQVPLIAYSVGERGLISQLLSQKFGGFFVYESLAGNPIPGLPSLDNIQEAYKLEHVK 240

Query: 236 ADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSV 295
           ADTKVFGLISKP+ HSKGPILHNP FRH+NYNGIYVPMFVDDLK+FF+TY  PDF+GF V
Sbjct: 241 ADTKVFGLISKPISHSKGPILHNPPFRHINYNGIYVPMFVDDLKEFFNTYPCPDFSGFIV 300

Query: 296 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 355
           G PYKE +++FCDEVHPLAQ+I AVNTIIRR   GKL+GYNT CEA+ITAIEDA+ E G 
Sbjct: 301 GIPYKEEILRFCDEVHPLAQSIGAVNTIIRRARHGKLVGYNTHCEAAITAIEDALIEHGC 360

Query: 356 KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS 404
            +G AS GSPLAGR+FVL GAGGAG ALAFG+KSRGA +VIFDI+F+++
Sbjct: 361 NDGGASLGSPLAGRLFVLVGAGGAGIALAFGSKSRGALLVIFDINFDRA 409

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559348|ref|XP_002520694.1| shikimate dehydrogenase, putative [Ricinus communis] gi|223540079|gb|EEF41656.1| shikimate dehydrogenase, putative [Ricinus communis]

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/398 (57%), Positives = 302/398 (75%), Gaps = 2/398 (0%)

Query: 8   KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
           +N  ++C PL  ++  ++LS M +A+ EGAD+VE+R+D ++ F     +E ++  + LP 
Sbjct: 4   QNNLLVCTPLECETAGEMLSCMEKARGEGADLVELRVDSMS-FSHISQVEKLIKLRTLPA 62

Query: 68  LIVYRPKWAGGLYEGDEHKR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRF 126
           ++ +RPK +     GD  K  L+ L LA DL  ++V+ E +VAS++   +Y  ++S  + 
Sbjct: 63  IVSFRPKTSKISSNGDSKKTCLQVLSLALDLDVEFVEMEYEVASDVSMAEYIYNRSSGKL 122

Query: 127 IVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAY 186
           IVS  ++   PS E LG L++ +Q+TGAD+IKLV +V+ IT++A +F++L+HCQVP+IA 
Sbjct: 123 IVSSYVNGGKPSAEKLGNLIANLQSTGADVIKLVINVDYITDLAPVFKMLAHCQVPLIAL 182

Query: 187 SVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISK 246
           +VG RGL+SQLL PKF G LVYGSL+   V G+PT+ SLR  YK+E+IN+DTKVFGLIS 
Sbjct: 183 AVGSRGLISQLLGPKFGGFLVYGSLRDKAVPGMPTLFSLRHVYKLEYINSDTKVFGLISN 242

Query: 247 PVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKF 306
           PVGHSKGPILHNP FRH  YNGIYVPM VDD+K+FF TY+S DFAGFSVG P+KEA +  
Sbjct: 243 PVGHSKGPILHNPAFRHTGYNGIYVPMQVDDIKEFFRTYTSTDFAGFSVGIPHKEAAVSC 302

Query: 307 CDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPL 366
           CDEVHPLA++I AVNTI+RRP+DGKL+GYNTDCEASITAIEDA++ER   N  A   SPL
Sbjct: 303 CDEVHPLAKSIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDALRERRPTNRGALDTSPL 362

Query: 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS 404
           AG+ FVL GAGGAGRALAFGA SRGARVV+F+ +FE++
Sbjct: 363 AGKTFVLIGAGGAGRALAFGASSRGARVVVFNRNFERA 400

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116787099|gb|ABK24375.1| unknown [Picea sitchensis]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/404 (55%), Positives = 292/404 (72%), Gaps = 10/404 (2%)

Query: 6   ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPL 65
           + +N  ++C+PLMA++VE++LS M  AK  GAD +EIRLDC+N +    DLE +L  + L
Sbjct: 1   MAQNGFLVCSPLMAETVEEMLSQMQHAKDVGADCIEIRLDCLNGYAT-TDLEQLLKARVL 59

Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTR 125
           P ++ YR K  GG YE DE KRL+ L LA +LGAD++D EL+VA + + +      S  +
Sbjct: 60  PTIVTYRLKSEGGKYEVDEKKRLDTLRLAHELGADFIDVELQVAFDFVSRIKDKKSSNCK 119

Query: 126 FIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA 185
            IVS ++   TPS EDL +LV  MQ+TGADI+K+V +  +IT+++R+FQL+ HCQVPIIA
Sbjct: 120 IIVSNHISGRTPSTEDLSHLVVNMQSTGADILKIVTTATNITDVSRVFQLIPHCQVPIIA 179

Query: 186 YSVGERGLVSQLLSPKFNGALVYGSL----KGTPVLGLPTVESLRQTYKVEHINADTKVF 241
              G+RGL+SQLL PKF G L+YGS+      TP  G P +  L   YK+  +N+DTKVF
Sbjct: 180 CVTGDRGLISQLLGPKFGGYLIYGSIGSGKDSTP--GQPKLADLTGHYKIGRLNSDTKVF 237

Query: 242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKE 301
           G+I+ PVGHSKGPILHN  FR   +NG+YVP+ VD+L  F   YS+PDFAGFSVG P+KE
Sbjct: 238 GVIANPVGHSKGPILHNQAFRDAGFNGVYVPLLVDNLADFLKVYSAPDFAGFSVGIPHKE 297

Query: 302 AVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK-ERGYKNGTA 360
           A +  CDEV PLAQ+I AVNTI+RR SDGKLIGYNTDCE +I+AIED +K E G  N  +
Sbjct: 298 AAVTCCDEVQPLAQSIGAVNTIVRRQSDGKLIGYNTDCEGAISAIEDGLKGETGSINSGS 357

Query: 361 SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS 404
           S  SPLAGR FVL GAGGAGRALAFGAK RGA V+I + ++E++
Sbjct: 358 S--SPLAGRTFVLVGAGGAGRALAFGAKQRGAHVIIANRNYERA 399

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2081036	603	MEE32 "MATERNAL EFFECT EMBRYO	0.992	0.673	0.478	7.4e-98
POMBASE|SPAC1834.02	1573	aro1 "pentafunctional aromatic	0.765	0.198	0.276	2.2e-21
CGD|CAL0004346	1551	ARO1 [Candida albicans (taxid:	0.833	0.219	0.279	7.6e-20
ASPGD|ASPL0000055969	1583	aromA [Emericella nidulans (ta	0.753	0.194	0.275	3.2e-19
TIGR_CMR|CBU_2075	233	CBU_2075 "3-dehydroquinate deh	0.484	0.849	0.280	2.2e-18
TIGR_CMR|CHY_0623	280	CHY_0623 "shikimate 5-dehydrog	0.295	0.432	0.380	8.1e-17
TIGR_CMR|BA_4561	308	BA_4561 "shikimate 5-dehydroge	0.273	0.363	0.370	6e-16
SGD|S000002534	1588	ARO1 "Pentafunctional arom pro	0.726	0.187	0.257	8e-15
TIGR_CMR|DET_0466	222	DET_0466 "3-dehydroquinate deh	0.462	0.851	0.270	1.3e-12
TIGR_CMR|SPO_3891	277	SPO_3891 "shikimate 5-dehydrog	0.317	0.469	0.350	3.7e-12

TAIR|locus:2081036 MEE32 "MATERNAL EFFECT EMBRYO ARREST 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
 Identities = 196/410 (47%), Positives = 269/410 (65%)

Query:     1 MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
             +G  +I KN ++ICAP+MA S+++++    +A   GAD+VEIRLD + +F P +DL+ I+
Sbjct:    84 IGSHDIVKNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTII 143

Query:    61 TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
              K PLP L  YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  + K     
Sbjct:   144 KKSPLPTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFI-KSIDGK 202

Query:   121 QSGT-RFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC 179
             + G  + IVS +    TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  
Sbjct:   203 KPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKA 262

Query:   180 QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINAD 237
             QVP I   +GERGL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  D
Sbjct:   263 QVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPD 322

Query:   238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGF 297
             TKV+G+I KPV HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   
Sbjct:   323 TKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTI 382

Query:   298 PYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKN 357
             P+KEA ++ CDEV PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  +
Sbjct:   383 PHKEAALQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPS 442

Query:   358 GTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFEQSLLL 407
                S  SPLA +  V+              K +GA+VVI +  +E++L L
Sbjct:   443 SVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALEL 492

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

POMBASE|SPAC1834.02 aro1 "pentafunctional aromatic polypeptide Aro1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 277 (102.6 bits), Expect = 2.2e-21, P = 2.2e-21
 Identities = 93/336 (27%), Positives = 155/336 (46%)

Query:    22 VEQVLSNMYQAKAEGADVVEIRLDCI------NNFQP----GKDLEIILTKKPLPVLIVY 71
             +E  L  +      G D +E+R+D +      N         + + ++     LP++   
Sbjct:  1064 IEDALPTLRDVTV-GCDAIEVRVDYLKDPKSSNGISSLDFVAEQISLLRCSTTLPIIFTI 1122

Query:    72 RPKWAGGLYEGDEHKRLEALHL-AEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 130
             R    GGL+  D+ +  + L L A   G D+VD EL  +S  +   Y  H+  T+ I+S 
Sbjct:  1123 RTISQGGLFPNDKEEEAKELMLSAMRYGCDFVDVELGWSSETINILYQ-HKGYTKLIMSW 1181

Query:   131 NLDCETPSEEDLGYLVSRMQATG--ADIIKLVFSVNDITEIARI--FQ--LLSHCQVPII 184
             +    T S       + +++     AD+IKLV   N++ +   +  F+  + +   +P+I
Sbjct:  1182 HDLSGTWSWARPHEWMQKVELASSYADVIKLVGMANNLNDNLELEEFRTRITNSMDIPLI 1241

Query:   185 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLI 244
              +++G  G +S++L+ KF   + +  L      G  TV+ L +   +       K F L 
Sbjct:  1242 LFNMGRFGQLSRILN-KFMTPVTHPLLPSKAAPGQLTVKQLNEARVLIGEILPEKFF-LF 1299

Query:   245 SKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVM 304
              KP+ HS+ PILH+  +  +     Y     D + +     + PDF G +V  PYK +VM
Sbjct:  1300 GKPIKHSRSPILHSTAYELLGLPHTYEAFETDTVDEVQKVLNLPDFGGANVTIPYKLSVM 1359

Query:   305 KFCDEVHPLAQAIAAVNTIIRRPSDGKLI--GYNTD 338
             KF DE+   A+   AVNTII      KL+  G NTD
Sbjct:  1360 KFMDELSDEARFFGAVNTIIPIRIGDKLVLRGDNTD 1395

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0004346 ARO1 [Candida albicans (taxid:5476)]

 Score = 265 (98.3 bits), Expect = 7.6e-20, P = 7.6e-20
 Identities = 103/369 (27%), Positives = 175/369 (47%)

Query:     3 VVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEII 59
             VV + ++  ++   L +  + +V+ ++ ++   GAD VE+R+D   +         + +I
Sbjct:  1038 VVPVGRSAAVV---LTSPDLNEVVRDL-ESITIGADAVELRVDLFKDTSAEFVAAQIAVI 1093

Query:    60 LTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAE-DLGADYVDFELKVASNILGKQYS 118
                  LP++   R    GG +  +    L++L L    LG  YVD +L  A N L ++ S
Sbjct:  1094 RKHADLPIIYTVRTMSQGGKFPDENVDELKSLLLLGIRLGVAYVDLQL-TAPNELIEEIS 1152

Query:   119 SHQSGTRFIVSC-NLDCETP-SEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLL 176
             S +  TR I +  +++ E   +  +     ++  +  ADI++LV   N I +   +    
Sbjct:  1153 SKKGFTRVIGTYQDINGELKWNNVEWKNKYNQGVSMNADIVRLVGKANSIQDNLDLENFK 1212

Query:   177 SHCQV-PIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPV-LGLPTVESLRQTYKVEHI 234
                 + P+IA+++G +G +SQ+L    NG     S K  P      T+  L QTY    I
Sbjct:  1213 KQNTLKPLIAFNLGSQGKLSQVL----NGTFTPISHKLLPNDEEFLTIGELNQTYF--DI 1266

Query:   235 NADT-KVFGLISKPVGHSKGPILHNPTFRHVN--YN-GIYVPMFVDDLKKFFSTYSSPDF 290
                T K F +I  P+ HS+ P LHN  ++ +N  Y  G +    VD +  + +  + PDF
Sbjct:  1267 GGFTAKKFWVIGSPIEHSRSPNLHNAGYKALNLPYQFGRFEATDVDVV--YDNLINKPDF 1324

Query:   291 AGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEA-SITAIEDA 349
              G ++  P K  +MKF  ++   A+ I AVNT+I  P +G   G NTD    S + I   
Sbjct:  1325 GGLAITMPLKLDIMKFATKLSDAAETIGAVNTLI--PIEGGYFGDNTDWVGISNSFIRAG 1382

Query:   350 IKERGYKNG 358
             +  +   NG
Sbjct:  1383 VPPKSSSNG 1391

GO:0005829 "cytosol" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

ASPGD|ASPL0000055969 aromA [Emericella nidulans (taxid:162425)]

 Score = 260 (96.6 bits), Expect = 3.2e-19, P = 3.2e-19
 Identities = 93/337 (27%), Positives = 154/337 (45%)

Query:    36 GADVVEIRLDCI-----NNFQPGKD-----LEIILTKKPLPVLIVYRPKWAGGLYEGDEH 85
             G+D VE+R+D +     NN  P  D     L  + ++  LP++   R +  GG +  + H
Sbjct:  1074 GSDAVELRVDLLKDPASNNDIPSVDYVVEQLSFLRSRVTLPIIFTIRTQSQGGRFPDNAH 1133

Query:    86 KR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETP-SEEDLG 143
                LE   LA   G ++VD E+    ++L  +  +   G   I++ + D +   S  ++ 
Sbjct:  1134 DAALELYRLAFRSGCEFVDLEIAFPEDML--RAVTEMKGFSKIIASHHDPKGELSWANMS 1191

Query:   144 YLVSRMQATG-ADIIKLVF---SVNDITEIARIFQLLSHCQ-VPIIAYSVGERGLVSQLL 198
             ++    +A    DIIKLV    +++D T + +     +    VP+IA ++G++G +S++L
Sbjct:  1192 WIKFYNKALEYGDIIKLVGVARNIDDNTALRKFKNWAAEAHDVPLIAINMGDQGQLSRIL 1251

Query:   199 SPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKV--FGLISKPVGHSKGPIL 256
                 NG +   S    P    P   S  +  K   +  + K   F +   P+  S+ P L
Sbjct:  1252 ----NGFMTPVSHPSLPFKAAPGQLSATEIRKGLSLMGEIKPKKFAIFGSPISQSRSPAL 1307

Query:   257 HNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA 316
             HN  F  V     Y  +   + +       SPDF G SV  P K  +M   DEV   A+ 
Sbjct:  1308 HNTLFAQVGLPHNYTRLETTNAQDVQEFIRSPDFGGASVTIPLKLDIMPLLDEVAAEAEI 1367

Query:   317 IAAVNTIIR----RPSDGKLIGYNTDCEASITAIEDA 349
             I AVNTII     + +  +L+G NTD +  I ++  A
Sbjct:  1368 IGAVNTIIPVSTGKNTPSRLVGRNTDWQGMILSLRKA 1404

GO:0070403 "NAD+ binding" evidence=IPI

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IDA;RCA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=RCA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=RCA;IDA

GO:0004765 "shikimate kinase activity" evidence=RCA;IDA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=RCA;IDA

GO:0009423 "chorismate biosynthetic process" evidence=IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=RCA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|CBU_2075 CBU_2075 "3-dehydroquinate dehydratase, type I" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 226 (84.6 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 58/207 (28%), Positives = 100/207 (48%)

Query:     9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVL 68
             NT  IC  ++ +++E+ LS + +A     D VE+R+D +    P   + II        +
Sbjct:     3 NTPRICVVVIGKTLEEFLSQL-EAAQTAVDFVELRIDYLEQINPNW-VRIIKNHTHKKAI 60

Query:    69 IVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIV 128
             +  R +  GG + G    + E L    DLG DY+D +L VA+ I     S H+   + I+
Sbjct:    61 LCCRARADGGKFLGTPEAQQEILQAGNDLGFDYLDIDLPVANKI-----SIHEKKAKIII 115

Query:   129 SCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--VPIIAY 186
             S +    TP   +L +L+  M+    D+ K         ++  +F+LL + +    +I  
Sbjct:   116 SYHNFLHTPPITELNFLLENMRLFNPDVFKFATKSEQYEDVKTLFKLLINKKNNENMIVL 175

Query:   187 SVGERGLVSQLLSPKFNGALVYGSLKG 213
              +GE+G + +LLSP   G L + S+ G
Sbjct:   176 GMGEQGKIIRLLSPLLGGYLTFSSING 202

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=ISS

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=ISS

TIGR_CMR|CHY_0623 CHY_0623 "shikimate 5-dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 212 (79.7 bits), Expect = 8.1e-17, P = 8.1e-17
 Identities = 48/126 (38%), Positives = 73/126 (57%)

Query:   234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
             IN +TK+ G+I  P+ H+  P +HN  F+ +N N +Y+P+ V  + L +      + +F 
Sbjct:     3 INGETKLTGIIGYPLKHTLSPQMHNEAFKALNLNFLYLPLEVAEESLPQAIYGLKAFNFR 62

Query:   292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI-EDAI 350
             G +V  PYKE V  F DEV   A+ I AVNTI+     G+LIGYNTD    + ++ E+ +
Sbjct:    63 GINVTIPYKEKVFPFLDEVATEAKTIGAVNTIVH--DRGRLIGYNTDAPGFLLSLKENDV 120

Query:   351 KERGYK 356
             +  G K
Sbjct:   121 EVTGKK 126

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|BA_4561 BA_4561 "shikimate 5-dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 215 (80.7 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 43/116 (37%), Positives = 68/116 (58%)

Query:   239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVG 296
             +++G+I  P+GHS  P++HN  F H+  +  Y    V +  L +      +   +GF+V 
Sbjct:     3 QLYGVIGNPIGHSLSPVMHNDAFEHLKMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query:   297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE 352
              P+K A+M + DE+ PLA+ I AVNT++ +  DGKLIGYNTD    + A++    E
Sbjct:    63 TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRALQSISSE 116

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

SGD|S000002534 ARO1 "Pentafunctional arom protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 222 (83.2 bits), Expect = 8.0e-15, P = 8.0e-15
 Identities = 81/315 (25%), Positives = 144/315 (45%)

Query:    36 GADVVEIRLDCINNFQP---GKDLEIIL-TKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL 91
             G + VE+R+D + N+      K L I+      +P++   R    GG +  +E K L  L
Sbjct:  1099 GCEAVEVRVDHLANYSADFVSKQLSILRKATDSIPIIFTVRTMKQGGNFPDEEFKTLREL 1158

Query:    92 H-LAEDLGADYVDFELKVASNILGKQYSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRM 149
             + +A   G +++D EL + ++I   QY   ++ G   I+  + D +     D     +R 
Sbjct:  1159 YDIALKNGVEFLDLELTLPTDI---QYEVINKRGNTKIIGSHHDFQGLYSWDDAEWENRF 1215

Query:   150 -QAT--GADIIKLVFSVNDITEIARIFQLL-SHCQVPIIAYSVGERGLVSQLLSPKFNGA 205
              QA     D++K V +  +  +  R+     +H   P+IA ++  +G +S++L+      
Sbjct:  1216 NQALTLDVDVVKFVGTAVNFEDNLRLEHFRDTHKNKPLIAVNMTSKGSISRVLNNVLT-P 1274

Query:   206 LVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVN 265
             +    L  +   G  TV  + + Y       + K   ++ KP+GHS+ PILHN  +  + 
Sbjct:  1275 VTSDLLPNSAAPGQLTVAQINKMY-TSMGGIEPKELFVVGKPIGHSRSPILHNTGYEILG 1333

Query:   266 YNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTI 323
                 +     +   L K      + +F G +V  P K  +M++ DE+   A+ I AVNT+
Sbjct:  1334 LPHKFDKFETESAQLVKEKLLDGNKNFGGAAVTIPLKLDIMQYMDELTDAAKVIGAVNTV 1393

Query:   324 IRRPSDGKLIGYNTD 338
             I    + K  G NTD
Sbjct:  1394 IPL-GNKKFKGDNTD 1407

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA;IDA

GO:0004765 "shikimate kinase activity" evidence=IEA;IDA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=IEA;TAS

TIGR_CMR|DET_0466 DET_0466 "3-dehydroquinate dehydratase, type I" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 174 (66.3 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 55/203 (27%), Positives = 97/203 (47%)

Query:    33 KAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH 92
             K+EGA   E+RLD +   +  ++   +L K   P +   R    GG + G E +R+  L 
Sbjct:    21 KSEGAAFYELRLDLLG--ESWREAAAMLDK---PFMATCRRSAEGGSFSGSEEERIGLLE 75

Query:    93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQAT 152
              A   GA  +D E       LG+     ++ ++ +VS +   +TPS  DL  LV  M   
Sbjct:    76 KAAAAGAFMLDIEYSTPH--LGEVLKRLRTQSKCLVSHHNFADTPSAGDLKTLVKDMLNY 133

Query:   153 GADIIKLVFSVNDITEIARIFQLLSHCQVP---IIAYSVGERGLVSQLLSPKFNGALVYG 209
              ADI K++ +   I +  ++  L+   ++P   I+A+++G  G++S++L P       Y 
Sbjct:   134 PADIYKVITTATSINDNIKLLNLIK--EIPDKKIVAFAMGNLGILSRILCPLAGSPFTYA 191

Query:   210 SLKGT--PVLGLPTVESLRQTYK 230
             SL  +     G  T+  + + Y+
Sbjct:   192 SLNDSNQSASGQMTLAQMIEIYR 214

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|SPO_3891 SPO_3891 "shikimate 5-dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 183 (69.5 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 47/134 (35%), Positives = 66/134 (49%)

Query:   242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPY 299
             G+I  P+ HSK P LH    +    NG Y+PM V   DL +   T     F G ++  P+
Sbjct:    10 GVIGHPISHSKSPRLHGHWLKTYGINGHYIPMDVAPQDLAQVVRTLPKAGFVGVNITIPH 69

Query:   300 KEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGT 359
             KEAVM   D++   A  I AVNT+I R  DG+++  NTD    +  +         K+G 
Sbjct:    70 KEAVMSVADQITDRATLIGAVNTLIFR-EDGRILADNTDGYGFMENLRAGAPGWDPKSGP 128

Query:   360 AS-FGSPLAGRMFV 372
             A  FG+  A R  +
Sbjct:   129 AVVFGAGGAARAVI 142

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SQT8	DHQSD_ARATH	1, ., 1, ., 1, ., 2, 5	0.5012	0.9951	0.6749	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.2.1.10	0.824
3rd Layer	1.1.1	0.766
3rd Layer	4.2.1	0.766
4th Layer	1.1.1.25	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
PLN02520	529	PLN02520, PLN02520, bifunctional 3-dehydroquinate	0.0
pfam01487	222	pfam01487, DHquinase_I, Type I 3-dehydroquinase	1e-59
COG0169	283	COG0169, AroE, Shikimate 5-dehydrogenase [Amino ac	5e-47
cd00502	225	cd00502, DHQase_I, Type I 3-dehydroquinase, (3-deh	2e-44
TIGR01093	228	TIGR01093, aroD, 3-dehydroquinate dehydratase, typ	9e-43
PRK00258	278	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewe	3e-37
TIGR00507	270	TIGR00507, aroE, shikimate 5-dehydrogenase	3e-34
COG0710	231	COG0710, AroD, 3-dehydroquinate dehydratase [Amino	2e-32
PRK09310	477	PRK09310, aroDE, bifunctional 3-dehydroquinate deh	2e-32
pfam08501	83	pfam08501, Shikimate_dh_N, Shikimate dehydrogenase	1e-25
PRK02412	253	PRK02412, aroD, 3-dehydroquinate dehydratase; Prov	2e-19
PRK12548	289	PRK12548, PRK12548, shikimate 5-dehydrogenase; Pro	5e-19
PRK12549	284	PRK12549, PRK12549, shikimate 5-dehydrogenase; Rev	5e-18
PRK12550	272	PRK12550, PRK12550, shikimate 5-dehydrogenase; Rev	9e-15
TIGR01809	282	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase	1e-14
PRK12749	288	PRK12749, PRK12749, quinate/shikimate dehydrogenas	1e-12
PRK13575	238	PRK13575, PRK13575, 3-dehydroquinate dehydratase;	8e-10
PRK14027	283	PRK14027, PRK14027, quinate/shikimate dehydrogenas	5e-09
PRK08324	681	PRK08324, PRK08324, short chain dehydrogenase; Val	0.002
cd01065	155	cd01065, NAD_bind_Shikimate_DH, NAD(P) binding dom	0.004

>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

 Score =  521 bits (1343), Expect = 0.0
 Identities = 218/409 (53%), Positives = 288/409 (70%), Gaps = 5/409 (1%)

Query: 1   MGVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL 60
            G   + +N T+IC P+MA SV+++L  M +AK  GAD+VEIRLD + NF P +DL+ ++
Sbjct: 13  QGSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLI 72

Query: 61  TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSH 120
            + PLP L+ YRPKW GG YEGDE+KR +AL LA +LGADYVD ELKVA   +       
Sbjct: 73  KQSPLPTLVTYRPKWEGGQYEGDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKK 132

Query: 121 QSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ 180
               + IVS +    TPS E+LG LV+R+QATGADI+K+  +  DIT++AR+FQ+  H Q
Sbjct: 133 PEKCKVIVSSHNYENTPSVEELGNLVARIQATGADIVKIATTALDITDVARMFQITVHSQ 192

Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADT 238
           VP I   +GERGL+S++L PKF G L +G+L+   V   G PT++ L   Y    I  DT
Sbjct: 193 VPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQIGPDT 252

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFP 298
           KV+G+I KPVGHSK PILHN  F+ V +NG+YV + VDDL KF  TYSSPDFAGFS   P
Sbjct: 253 KVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIP 312

Query: 299 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 358
           +KE  +K CDEV P+A++I A+NTIIRRPSDGKL+GYNTD   +I+AIED ++       
Sbjct: 313 HKEDALKCCDEVDPIAKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIEDGLRA---SGS 369

Query: 359 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL 407
           + + GSPLAG++FV+ GAGGAG+ALA+GAK +GARVVI +  +E++  L
Sbjct: 370 SPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKEL 418

Length = 529

>gnl|CDD|216526 pfam01487, DHquinase_I, Type I 3-dehydroquinase

 Score =  193 bits (492), Expect = 1e-59
 Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 7/223 (3%)

Query: 14  CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIV 70
           C P+   S+E+ L+ + +   EGAD VE+RLD + +       + L  +  K  LP++  
Sbjct: 1   CVPVTGPSLEEALAEL-EELEEGADAVELRLDLLEDVDAEDVSEQLSALREKTGLPIIFT 59

Query: 71  YRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 130
            R K  GG ++G E + LE L  A  LG DY+D EL  A + L     + + GT+ I+S 
Sbjct: 60  VRTKSEGGRFDGSEEEYLELLKEALRLGPDYIDIELSSAPDELLAVIIAKKGGTKIILSY 119

Query: 131 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ---VPIIAYS 187
           +    TPS EDL  L   MQ  GADI+K+    N I ++ R+ +  S  +    P+IA S
Sbjct: 120 HDFEGTPSWEDLLSLYEEMQKLGADIVKIAVMANSIEDVLRLLRFTSEAKELDKPLIAIS 179

Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK 230
           +GE G +S++L P F   L Y SL      G  T+E LR+  +
Sbjct: 180 MGELGRISRILGPVFGSVLTYASLGKASAPGQITLEELREALE 222

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyzes the trans-dehydration of 3-dehydroshikimate see pfam01220. Length = 222

>gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

 Score =  162 bits (411), Expect = 5e-47
 Identities = 63/172 (36%), Positives = 91/172 (52%), Gaps = 15/172 (8%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           +N  TK+FG+I  P+ HS  P +HN  FR +  + +Y+   V  +DL +  S   +  F 
Sbjct: 2   MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFR 61

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KEA +   DE+ P A+ I AVNT++R   DGKL GYNTD          A+K
Sbjct: 62  GLNVTIPFKEAALPLLDELSPRARLIGAVNTLVRE-DDGKLRGYNTDGI----GFLRALK 116

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFE 402
           E G           + G+  ++ GAGGA RA+AF     GA R+ + +   E
Sbjct: 117 EFGLPV-------DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRE 161

Length = 283

>gnl|CDD|188633 cd00502, DHQase_I, Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase)

 Score =  153 bits (389), Expect = 2e-44
 Identities = 80/230 (34%), Positives = 118/230 (51%), Gaps = 17/230 (7%)

Query: 12  MICAPLMA-QSVEQVLSNMYQAKAEGADVVEIRLDCINN---FQPGKDLEIILTKKPLPV 67
            IC PL     +E+ LS        GAD VE+R+D + +       + L ++    PLP+
Sbjct: 1   KICVPLTGPDLLEEALSL--LELLLGADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPI 58

Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSG-TRF 126
           +   R K  GG +EG E + LE L  A  LG DYVD EL   S +L +  +S + G T+ 
Sbjct: 59  IFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELD--SALLEELINSRKKGNTKI 116

Query: 127 IVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VP 182
           I S +    TPS+E+L   + +M A GADI+K+    N I +  R+ +     +    +P
Sbjct: 117 IGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIP 176

Query: 183 IIAYSVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVESLRQTYK 230
           +IA ++GE G +S++LSP F   L Y SL     P  G  +VE L+Q   
Sbjct: 177 LIAINMGELGKLSRILSPVFGSPLTYASLPEPSAP--GQLSVEELKQALS 224

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase). Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism. Length = 225

>gnl|CDD|233268 TIGR01093, aroD, 3-dehydroquinate dehydratase, type I

 Score =  149 bits (377), Expect = 9e-43
 Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 18/232 (7%)

Query: 12  MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE-------IILTKKP 64
            I  PL A  +E+ L+   +   +GAD+VE+R+D + +     D++        +   KP
Sbjct: 1   KIFVPLTAPDLEEALATA-EKICKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKP 59

Query: 65  LPVLIVYRPKWAGGLYEGDEHKRLEALHLAED-LGADYVDFELKVASNILGKQY-SSHQS 122
           L  +   R    GG + G+E + LE L  A D  G D+VD EL +  + + +    + + 
Sbjct: 60  L--IFTIRTISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKG 117

Query: 123 GTRFIVSCNLDCE-TPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ- 180
           GT+ I+S   D + TPS E++   + +  + GADI+K+    N   ++  + ++ +    
Sbjct: 118 GTKIIMS-YHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDE 176

Query: 181 ---VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTY 229
              VP+I  S+G+RG +S++L   F   L +GSL      G  +V+ LR+  
Sbjct: 177 HADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLRELL 228

This model detects 3-dehydroquinate dehydratase, type I, either as a monofunctional protein or as a domain of a larger, multifunctional protein. It is often found fused to shikimate 5-dehydrogenase (EC 1.1.1.25), and sometimes additional domains. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by the model TIGR01088 [Amino acid biosynthesis, Aromatic amino acid family]. Length = 228

>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed

 Score =  136 bits (345), Expect = 3e-37
 Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 17/167 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           I   T+++ +I  P+ HSK P++HN  F+ +  +G+Y+ + V  +DL+     + +    
Sbjct: 1   ITGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGR 60

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KEA     DE+   A+ I AVNT++    DG+LIG NTD          A++
Sbjct: 61  GANVTVPFKEAAFALADELSERARLIGAVNTLVLE--DGRLIGDNTD----GIGFVRALE 114

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIF 397
           ER         G  L G+  ++ GAGGA RA+       G A + I 
Sbjct: 115 ERL--------GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIV 153

Length = 278

>gnl|CDD|161904 TIGR00507, aroE, shikimate 5-dehydrogenase

 Score =  127 bits (322), Expect = 3e-34
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 17/166 (10%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 296
           K++G+I  P+ HSK P++HN  F+ +   G Y+   V  DDL+   S + +  F G +V 
Sbjct: 1   KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVT 60

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 356
            P+KE   +F DE+   A+   AVNT++    DGKL+GYNTD    ++ +E  I  R  +
Sbjct: 61  SPFKERAFQFLDEIDGRAKLAGAVNTLVLE--DGKLVGYNTDGIGLVSDLEQLIPLRPNQ 118

Query: 357 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402
           N              ++ GAGGA +A+A         V+I +    
Sbjct: 119 N-------------VLIIGAGGAAKAVALELLKADCNVIIANRTVS 151

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain [Amino acid biosynthesis, Aromatic amino acid family]. Length = 270

>gnl|CDD|223782 COG0710, AroD, 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

 Score =  122 bits (307), Expect = 2e-32
 Identities = 56/231 (24%), Positives = 109/231 (47%), Gaps = 7/231 (3%)

Query: 11  TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCI-NNFQPGKDLEIILTKKP-LPVL 68
             I  P++   + ++     ++K   AD+VE+R+D + +N +  +  + +  K P  P++
Sbjct: 2   PKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLI 61

Query: 69  IVYRPKWAGGLYEGDEHKRLEALH-LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
             +R    GG + G E + +E L  LAE  G DY+D EL    + + +     +     I
Sbjct: 62  FTFRTVKEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKK-HGVI 120

Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQV---PII 184
           VS +   +TP  E++   + +M++ GADI+K+        ++  + +     +    P+I
Sbjct: 121 VSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKEAEKPVI 180

Query: 185 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 235
             S+G+ G +S++  P F   + Y SL      G  +V+ LR+   +    
Sbjct: 181 TISMGKTGKISRVAGPVFGSPITYASLDKPSAPGQISVDELRKILTLLGYI 231

Length = 231

>gnl|CDD|137204 PRK09310, aroDE, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

 Score =  127 bits (320), Expect = 2e-32
 Identities = 106/395 (26%), Positives = 182/395 (46%), Gaps = 41/395 (10%)

Query: 12  MICA----PLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
           M+CA    P   ++ +Q+L ++        D +E+R+D + +     +L+ ++   P+P+
Sbjct: 1   MLCATISGPSFLEAKQQILRSLKLV-----DCIELRVDLLLSLS-DLELKKLIELAPIPI 54

Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
           L   + +      +     ++    LA+ L  +Y+D +       L +    H    + I
Sbjct: 55  LTWKKHE---SCSQAAWIDKM--QSLAK-LNPNYLDIDKDFPKEALIRIRKLHPK-IKII 107

Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187
           +S +    T   ED+  L + M A+ AD  K+  S +  T++  I               
Sbjct: 108 LSYH----TSEHEDIIQLYNEMLASAADYYKIAVSSSSSTDLLNIIHQKRSLPENTTVLC 163

Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLIS 245
           +G  G  S++LSP    A  Y +  G P +  G  ++E L   Y   +++A + ++GLI 
Sbjct: 164 MGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHL-LFYNYANLSAQSPIYGLIG 222

Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYV--PMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAV 303
            PV  S   + HNP F  ++ N  Y+  P+   +L KFFST     F G SV  P K AV
Sbjct: 223 DPVDRSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAV 282

Query: 304 MKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFG 363
           + F D++ P  +   + NT++ R  +GK+ GYNTD E   + ++        KN      
Sbjct: 283 LDFLDKLDPSVKLCGSCNTLVFR--NGKIEGYNTDGEGLFSLLKQ-------KN------ 327

Query: 364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFD 398
            PL  +   + GAGGA +A+A      GA ++IF+
Sbjct: 328 IPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFN 362

Length = 477

>gnl|CDD|149523 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate binding domain

 Score = 98.8 bits (247), Expect = 1e-25
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYK 300
           LI  P+ HS  P++HN  F+ +  NG+YV   V  D+L +F     +  F G +V  P+K
Sbjct: 1   LIGNPISHSLSPLIHNAAFKALGLNGVYVAFEVPPDNLPEFVEGLRALGFRGLNVTIPHK 60

Query: 301 EAVMKFCDEVHPLAQAIAAVNTI 323
           EA +   DE+ P A+ I AVNTI
Sbjct: 61  EAAIPLLDELSPEAKRIGAVNTI 83

This domain is the substrate binding domain of shikimate dehydrogenase. Length = 83

>gnl|CDD|235036 PRK02412, aroD, 3-dehydroquinate dehydratase; Provisional

 Score = 86.5 bits (215), Expect = 2e-19
 Identities = 56/244 (22%), Positives = 112/244 (45%), Gaps = 28/244 (11%)

Query: 4   VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT-- 61
           + I +    I  P+M +++E+VL+         AD++E R D     +   D+E +L   
Sbjct: 9   LVIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRAD---FLEKISDVESVLAAA 65

Query: 62  ---KKPL---PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA-DYVDFELKVASNILG 114
              ++     P+L  +R    GG     + + L  +      G  DY+D EL    +++ 
Sbjct: 66  PAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVK 125

Query: 115 KQYS-SHQSGTRFIVSC-NLDCETPSEEDLGYLVSRMQATGADIIKL---------VFSV 163
           +  + +H+ G + ++S  + + +TP +E++   + +M++ GADI+K+         V ++
Sbjct: 126 EMVAFAHEHGVKVVLSYHDFE-KTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTL 184

Query: 164 NDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVE 223
            + T   +          P+I  S+G+ G +S+L    F  +  + SL      G  +VE
Sbjct: 185 LNATREMKELYA----DQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVE 240

Query: 224 SLRQ 227
            LR+
Sbjct: 241 DLRR 244

Length = 253

>gnl|CDD|183585 PRK12548, PRK12548, shikimate 5-dehydrogenase; Provisional

 Score = 86.3 bits (214), Expect = 5e-19
 Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 18/169 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVP--MFVDDLKKFFSTYSSPDFA 291
           I+  T + GLI  PVGHS  P ++N +F+    +  Y+   + VD +        + +  
Sbjct: 5   ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMR 64

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P K    K+ DE+ P A+ I AVNTI+    DGKL G+ TD    +  + +   
Sbjct: 65  GANVTMPCKSEAAKYMDELSPAARIIGAVNTIVN--DDGKLTGHITDGLGFVRNLREH-- 120

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDI 399
                      G  + G+   + GAGGA  A+       GA+ + IF+I
Sbjct: 121 -----------GVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNI 158

Length = 289

>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed

 Score = 83.0 bits (206), Expect = 5e-18
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 24/123 (19%)

Query: 290 FAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDC----EASITA 345
           FAG ++  P K+AV+   DE+   A+A+ AVNT++ R  DG+ IG+NTD     E+    
Sbjct: 64  FAGLNITHPCKQAVIPHLDELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRG 121

Query: 346 IEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQS 404
           + DA  ER                  V  GAGGAG A+A    + G  R+ IFD+D  ++
Sbjct: 122 LPDASLERV-----------------VQLGAGGAGAAVAHALLTLGVERLTIFDVDPARA 164

Query: 405 LLL 407
             L
Sbjct: 165 AAL 167

Length = 284

>gnl|CDD|183587 PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed

 Score = 73.4 bits (181), Expect = 9e-15
 Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 19/165 (11%)

Query: 233 HINADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFA 291
            IN DT++   L ++P     G   HN  +  +  N +Y      DL        +    
Sbjct: 4   MINKDTQLCISLAARPSNF--GTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIR 61

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KEAV+   DE+ P AQAI +VNTI+   +DG L  YNTD      AI   + 
Sbjct: 62  GCAVSMPFKEAVIPLVDELDPSAQAIESVNTIVN--TDGHLKAYNTD----YIAIAKLLA 115

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396
                                L G+GG  +A+A   +  G     
Sbjct: 116 SYQVPPDLV----------VALRGSGGMAKAVAAALRDAGFTDGT 150

Length = 272

>gnl|CDD|233580 TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type

 Score = 73.4 bits (180), Expect = 1e-14
 Identities = 50/156 (32%), Positives = 68/156 (43%), Gaps = 16/156 (10%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD---LKKFFSTYSSPDFAGFSV 295
           K   +I KP+ HS+ P LHN  +  +                LK+  S +  P F G SV
Sbjct: 6   KKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASV 64

Query: 296 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 355
             P K A+++F DE    A  I +VNT++R   +G   G NTD       I  A+   G 
Sbjct: 65  TIPLKFAILRFADEHTDRASLIGSVNTLLRT-QNGIWKGDNTD----WDGIAGALANIGK 119

Query: 356 KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG 391
                    PLAG   ++ GAGG  RA  +   S G
Sbjct: 120 F-------EPLAGFRGLVIGAGGTSRAAVYALASLG 148

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway [Amino acid biosynthesis, Aromatic amino acid family]. Length = 282

>gnl|CDD|183721 PRK12749, PRK12749, quinate/shikimate dehydrogenase; Reviewed

 Score = 67.3 bits (164), Expect = 1e-12
 Identities = 47/164 (28%), Positives = 71/164 (43%), Gaps = 17/164 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 291
           + A  ++ GL++ P+ HS  P + N           Y+   VD+           +    
Sbjct: 3   VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMR 62

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I     AIK
Sbjct: 63  GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIR----AIK 116

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV 395
           E G+          + G+  VL GAGGA  A+       G + +
Sbjct: 117 ESGFD---------IKGKTMVLLGAGGASTAIGAQGAIEGLKEI 151

Length = 288

>gnl|CDD|184156 PRK13575, PRK13575, 3-dehydroquinate dehydratase; Provisional

 Score = 58.6 bits (142), Expect = 8e-10
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 13/190 (6%)

Query: 38  DVVEIRLDCINNFQPGKDLEIILTKKPL----PVLIVYRPKWAGGLYEGDEHKRLEAL-H 92
           D++E+R+D   N    +  E+I   K L     +L+ YR K  GG  +      L  L  
Sbjct: 32  DIIELRIDQWENVTVDQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQFTNDLYLNLLSD 91

Query: 93  LAEDLGADYVDFELKVASNILGKQY---SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRM 149
           LA   G D +D E +   +I   Q       Q     ++S +    TP  ++L ++  +M
Sbjct: 92  LANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKM 151

Query: 150 QATGADIIKLVFSVNDITEIARIFQLLS----HCQVPIIAYSVGERGLVSQLLSPKFNGA 205
           Q    + +KL    ++  ++  + Q +S         ++  S+ + GL+S+     F GA
Sbjct: 152 QKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGA 211

Query: 206 LVYGSLKGTP 215
           L YG + G P
Sbjct: 212 LSYGCI-GEP 220

Length = 238

>gnl|CDD|172521 PRK14027, PRK14027, quinate/shikimate dehydrogenase; Provisional

 Score = 56.6 bits (136), Expect = 5e-09
 Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 22/174 (12%)

Query: 235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIY--VPMFVD-----DLKKFFSTYSS 287
             D+ + GLI + +  S+ P +H           +Y  +          DLK        
Sbjct: 1   MNDSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALY 60

Query: 288 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
             F G ++  PYK+AV+   DEV   A  + AVNT++   + G   G+NTD       +E
Sbjct: 61  LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVV-IDATGHTTGHNTDVSGFGRGME 119

Query: 348 DAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID 400
           +     G  N              V  GAGG G A+A+   + G  ++ + D+D
Sbjct: 120 E-----GLPNAKLD--------SVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160

Length = 283

>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 365 PLAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402
           PLAG++  V   AGG G+A A    + GA VV+ D+D E
Sbjct: 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457

Length = 681

>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate dehydrogenase

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 14/63 (22%)

Query: 337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVV 395
           TD          A++E          G  L G+  ++ GAGGA RA+A+     GA ++V
Sbjct: 1   TD----GLGFVRALEE---------AGIELKGKKVLILGAGGAARAVAYALAELGAAKIV 47

Query: 396 IFD 398
           I +
Sbjct: 48  IVN 50

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DHs, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	100.0
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	100.0
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	100.0
COG0710	231	AroD 3-dehydroquinate dehydratase [Amino acid tran	100.0
TIGR01093	228	aroD 3-dehydroquinate dehydratase, type I. Type II	100.0
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	100.0
PRK13575	238	3-dehydroquinate dehydratase; Provisional	100.0
cd00502	225	DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat	100.0
PRK13576	216	3-dehydroquinate dehydratase; Provisional	100.0
PRK01261	229	aroD 3-dehydroquinate dehydratase; Provisional	100.0
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	100.0
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	100.0
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	100.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	100.0
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	100.0
PRK12548	289	shikimate 5-dehydrogenase; Provisional	100.0
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	100.0
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	100.0
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	100.0
KOG0692	595	consensus Pentafunctional AROM protein [Amino acid	99.96
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	99.95
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.8
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.88
PRK08291	330	ectoine utilization protein EutC; Validated	98.68
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.57
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.42
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.22
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.2
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.03
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.88
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.71
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.35
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.29
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.27
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.26
PLN00203	519	glutamyl-tRNA reductase	97.18
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.15
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.15
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.14
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.94
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.85
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	96.83
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.71
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.61
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	96.58
PRK06141	314	ornithine cyclodeaminase; Validated	96.54
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	96.47
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.45
PRK07340	304	ornithine cyclodeaminase; Validated	96.41
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.35
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.3
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	96.26
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.25
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	96.16
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.14
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.14
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.11
PRK08328	231	hypothetical protein; Provisional	96.08
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.08
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.07
PRK08618	325	ornithine cyclodeaminase; Validated	96.02
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.99
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.98
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	95.93
PRK11572	248	copper homeostasis protein CutC; Provisional	95.92
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.86
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	95.83
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	95.78
PRK05866	293	short chain dehydrogenase; Provisional	95.69
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.65
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.64
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.63
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	95.6
PRK12331	448	oxaloacetate decarboxylase; Provisional	95.59
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.53
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	95.53
PRK06196	315	oxidoreductase; Provisional	95.47
PRK14982	340	acyl-ACP reductase; Provisional	95.47
PLN02780	320	ketoreductase/ oxidoreductase	95.42
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.4
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.38
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	95.37
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.36
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.33
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.31
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	95.3
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.29
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.25
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	95.15
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	95.14
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.11
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.1
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.07
PRK12330	499	oxaloacetate decarboxylase; Provisional	95.05
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.03
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	95.02
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.01
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	94.99
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.97
KOG1208	314	consensus Dehydrogenases with different specificit	94.96
PRK14041	467	oxaloacetate decarboxylase; Provisional	94.9
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.9
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.9
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.85
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	94.85
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	94.82
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	94.8
PRK09282	592	pyruvate carboxylase subunit B; Validated	94.79
PLN02494	477	adenosylhomocysteinase	94.77
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.76
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	94.73
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.72
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.7
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.67
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.64
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.59
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.58
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	94.58
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	94.57
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.53
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.52
PLN03209	576	translocon at the inner envelope of chloroplast su	94.45
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	94.44
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	94.42
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.41
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.36
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	94.35
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.31
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.28
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.28
PRK08223	287	hypothetical protein; Validated	94.27
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	94.26
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	94.23
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.22
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	94.22
PRK06720	169	hypothetical protein; Provisional	94.19
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.16
PRK14040	593	oxaloacetate decarboxylase; Provisional	94.08
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	94.04
PRK06153	393	hypothetical protein; Provisional	94.03
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	93.98
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	93.96
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.93
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	93.91
cd08205	367	RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l	93.91
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	93.9
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.88
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	93.71
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	93.68
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	93.63
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	93.62
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.49
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	93.48
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	93.33
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	93.24
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	93.24
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	93.22
PRK13243	333	glyoxylate reductase; Reviewed	93.2
PLN02928	347	oxidoreductase family protein	93.19
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.19
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	93.17
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	93.12
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	93.12
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	93.12
PRK06484	520	short chain dehydrogenase; Validated	93.11
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	93.11
PRK14031	444	glutamate dehydrogenase; Provisional	93.1
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	93.08
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	93.07
PRK12779	944	putative bifunctional glutamate synthase subunit b	93.05
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	92.95
PRK06567	1028	putative bifunctional glutamate synthase subunit b	92.91
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	92.9
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	92.87
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	92.85
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	92.85
PRK08324	681	short chain dehydrogenase; Validated	92.84
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	92.83
PRK12581	468	oxaloacetate decarboxylase; Provisional	92.81
PRK07226	267	fructose-bisphosphate aldolase; Provisional	92.79
PRK11613	282	folP dihydropteroate synthase; Provisional	92.78
PRK07201	657	short chain dehydrogenase; Provisional	92.75
PRK12480	330	D-lactate dehydrogenase; Provisional	92.74
PRK07411	390	hypothetical protein; Validated	92.73
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	92.71
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	92.64
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	92.62
PRK05855	582	short chain dehydrogenase; Validated	92.6
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	92.53
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	92.53
PLN02591	250	tryptophan synthase	92.52
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	92.5
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.49
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	92.45
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	92.27
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.22
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	92.17
PRK07985	294	oxidoreductase; Provisional	92.13
PLN02334	229	ribulose-phosphate 3-epimerase	92.12
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	92.1
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	92.09
PRK06046	326	alanine dehydrogenase; Validated	92.07
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	92.04
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	92.02
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.94
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	91.93
PRK07226	267	fructose-bisphosphate aldolase; Provisional	91.91
PLN02477	410	glutamate dehydrogenase	91.91
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	91.9
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	91.86
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	91.86
PRK06701	290	short chain dehydrogenase; Provisional	91.85
PRK12831	464	putative oxidoreductase; Provisional	91.84
PLN02852	491	ferredoxin-NADP+ reductase	91.83
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	91.81
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	91.81
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	91.79
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	91.78
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	91.77
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	91.53
PRK06128	300	oxidoreductase; Provisional	91.44
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	91.43
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	91.38
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	91.24
PLN02602	350	lactate dehydrogenase	91.16
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	91.16
COG0281	432	SfcA Malic enzyme [Energy production and conversio	91.12
PLN02686	367	cinnamoyl-CoA reductase	91.12
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	91.11
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	91.09
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	91.06
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	91.04
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	91.02
PRK04148	134	hypothetical protein; Provisional	90.99
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	90.97
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	90.96
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	90.95
PRK12862	763	malic enzyme; Reviewed	90.93
PRK12814	652	putative NADPH-dependent glutamate synthase small	90.92
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	90.89
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	90.88
PRK06199	379	ornithine cyclodeaminase; Validated	90.77
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.75
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	90.7
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	90.65
TIGR00190	423	thiC thiamine biosynthesis protein ThiC. The thiC	90.62
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	90.56
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	90.54
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	90.53
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	90.49
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	90.46
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	90.4
PRK14851	679	hypothetical protein; Provisional	90.32
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	90.29
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	90.26
PRK06436	303	glycerate dehydrogenase; Provisional	90.21
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	90.18
PRK06823	315	ornithine cyclodeaminase; Validated	90.17
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	90.08
PRK06407	301	ornithine cyclodeaminase; Provisional	90.07
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	90.06
PRK14030	445	glutamate dehydrogenase; Provisional	90.04
PTZ00245	287	ubiquitin activating enzyme; Provisional	89.97
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	89.97
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.96
PRK09496	453	trkA potassium transporter peripheral membrane com	89.96
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	89.82
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	89.79
PRK07574	385	formate dehydrogenase; Provisional	89.78
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	89.78
PRK02227	238	hypothetical protein; Provisional	89.74
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	89.73
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	89.69
PRK05562	223	precorrin-2 dehydrogenase; Provisional	89.69
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	89.68
PLN02342	348	ornithine carbamoyltransferase	89.67
PRK13523	337	NADPH dehydrogenase NamA; Provisional	89.66
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	89.58
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	89.56
PRK13984	604	putative oxidoreductase; Provisional	89.55
PLN03139	386	formate dehydrogenase; Provisional	89.42
PRK07589	346	ornithine cyclodeaminase; Validated	89.41
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	89.36
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	89.35
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	89.31
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	89.3
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	89.27
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	89.24
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	89.2
PRK08605	332	D-lactate dehydrogenase; Validated	89.18
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	89.14
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	88.91
PRK14042	596	pyruvate carboxylase subunit B; Provisional	88.88
PLN02740	381	Alcohol dehydrogenase-like	88.88
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	88.84
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	88.79
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	88.75
PRK06487	317	glycerate dehydrogenase; Provisional	88.72
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	88.71
PRK11730	715	fadB multifunctional fatty acid oxidation complex	88.7
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	88.66
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	88.62
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	88.62
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	88.58
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	88.52
PRK09414	445	glutamate dehydrogenase; Provisional	88.46
KOG0409	327	consensus Predicted dehydrogenase [General functio	88.45
cd08210	364	RLP_RrRLP Ribulose bisphosphate carboxylase like p	88.43
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	88.4
PRK14852	989	hypothetical protein; Provisional	88.35
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	88.34
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	88.34
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	88.3
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	88.3
PLN02256	304	arogenate dehydrogenase	88.29
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	88.26
PLN02463	447	lycopene beta cyclase	88.23
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	88.13
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	88.08
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	88.05
PLN02985	514	squalene monooxygenase	88.02
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	88.02
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	88.02
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	88.01
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	87.91
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	87.85
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	87.84
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	87.75
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	87.73
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	87.73
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	87.67
PRK06932	314	glycerate dehydrogenase; Provisional	87.67
PF00289	110	CPSase_L_chain: Carbamoyl-phosphate synthase L cha	87.63
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	87.62
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	87.6
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	87.57
PRK07121	492	hypothetical protein; Validated	87.55
PRK08132	547	FAD-dependent oxidoreductase; Provisional	87.52
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	87.5
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	87.49
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	87.45
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	87.37
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	87.37
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	87.29
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	87.24
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	87.19
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	87.19
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	87.16
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	87.11
PLN02572	442	UDP-sulfoquinovose synthase	87.04
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	87.01
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	86.95
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	86.93
PLN02586	360	probable cinnamyl alcohol dehydrogenase	86.85
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	86.84
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	86.73
PRK12999	1146	pyruvate carboxylase; Reviewed	86.69
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	86.63
PTZ00188	506	adrenodoxin reductase; Provisional	86.61
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	86.61
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	86.59
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	86.45
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	86.41
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	86.39
PRK10669	558	putative cation:proton antiport protein; Provision	86.31
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	86.28
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	86.28
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	86.24
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	86.08
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	86.05
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	86.01
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	86.0
PLN02712	667	arogenate dehydrogenase	85.99
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	85.87
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	85.8
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	85.79
PRK08005	210	epimerase; Validated	85.78
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	85.77
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	85.76
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	85.71
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	85.69
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	85.57
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	85.44
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	85.38
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	85.36
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	85.3
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	85.28
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	85.27
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	85.19
PF05853	272	DUF849: Prokaryotic protein of unknown function (D	85.19
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	85.16
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	85.08
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	85.08
PLN02306	386	hydroxypyruvate reductase	85.07
PLN02514	357	cinnamyl-alcohol dehydrogenase	85.06
PLN02827	378	Alcohol dehydrogenase-like	85.04
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	84.99
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	84.88
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	84.81
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	84.77
PTZ00367	567	squalene epoxidase; Provisional	84.77
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	84.77
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	84.75
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	84.75
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	84.72
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	84.63
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	84.63
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	84.59
KOG3040	262	consensus Predicted sugar phosphatase (HAD superfa	84.54
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	84.41
PLN02712	667	arogenate dehydrogenase	84.4
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	84.4
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	84.36
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	84.26
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	84.2
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	84.0
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	83.94
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	83.92
PF10566	273	Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro:	83.87
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	83.82
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	83.81
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	83.71
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	83.65
cd00019	279	AP2Ec AP endonuclease family 2; These endonuclease	83.62
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	83.61
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	83.57
PF04551	359	GcpE: GcpE protein; InterPro: IPR004588 This prote	83.56
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	83.54
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	83.47
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	83.46
PRK08294	634	phenol 2-monooxygenase; Provisional	83.45
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	83.43
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	83.35
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	83.29
PRK02102	331	ornithine carbamoyltransferase; Validated	83.24
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	83.17
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	83.11
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	83.05
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	82.98
PF00809	210	Pterin_bind: Pterin binding enzyme This Prosite en	82.94
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	82.88
PLN02178	375	cinnamyl-alcohol dehydrogenase	82.78
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	82.75
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	82.71
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	82.66
PRK08227	264	autoinducer 2 aldolase; Validated	82.5
PRK13977	576	myosin-cross-reactive antigen; Provisional	82.44
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	82.27
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	82.24
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	82.21
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	82.17
PLN02661	357	Putative thiazole synthesis	82.14
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	82.13
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	82.04
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	82.02
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	81.98
PRK00779	304	ornithine carbamoyltransferase; Provisional	81.86
COG3142	241	CutC Uncharacterized protein involved in copper re	81.71
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	81.71
PLN02697	529	lycopene epsilon cyclase	81.7
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	81.67
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	81.59
PRK03562	621	glutathione-regulated potassium-efflux system prot	81.52
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	81.49
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	81.42
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	81.41
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	81.11
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	81.05
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	81.02
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	81.0
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	80.95
PLN02464	627	glycerol-3-phosphate dehydrogenase	80.92
PRK12831	464	putative oxidoreductase; Provisional	80.91
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	80.65
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	80.57
PLN02858	1378	fructose-bisphosphate aldolase	80.38
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	80.37
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	80.36
PLN00112	444	malate dehydrogenase (NADP); Provisional	80.29
PLN02253	280	xanthoxin dehydrogenase	80.19
PTZ00058	561	glutathione reductase; Provisional	80.19
PLN02702	364	L-idonate 5-dehydrogenase	80.15
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	80.15
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	80.03
PRK03659	601	glutathione-regulated potassium-efflux system prot	80.03

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=100.00  E-value=4.7e-102  Score=811.78  Aligned_cols=404  Identities=54%  Similarity=0.923  Sum_probs=368.7

Q ss_pred             CcccCCCCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCC
Q 015310            2 GVVNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYE   81 (409)
Q Consensus         2 ~~~~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~   81 (409)
                      |+--|.+++|+|||||++++.+|++.+++++...++|+||||+|+|.+..+.+++..+++..++|+|||+|+++|||.++
T Consensus        14 ~~~~~~~~~~~icv~i~~~~~~e~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~~~~~~~~plI~T~R~~~eGG~~~   93 (529)
T PLN02520         14 GSGGVRRNPTLICVPIMADSVDKMLIEMAKAKELGADLVEIRLDFLKNFNPREDLKTLIKQSPLPTLVTYRPKWEGGQYE   93 (529)
T ss_pred             cccccccCCCEEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEEeccccccCCHHHHHHHHhcCCCcEEEEeccHHHCCCCC
Confidence            45567889999999999999999999999887789999999999999876656677777777899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310           82 GDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF  161 (409)
Q Consensus        82 ~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~  161 (409)
                      +++++|+++|+.+++.|+||||||++..++..+.+..+++.++++|+|||||++||+.++|.+++++|+++||||+|||+
T Consensus        94 ~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~~~~~~~~gaDi~Kia~  173 (529)
T PLN02520         94 GDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNLVARIQATGADIVKIAT  173 (529)
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence            99999999999999999999999999987655555466778999999999999999999999999999999999999999


Q ss_pred             ecCCHhHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCC--CCCCCCCCCHHHHHhhhhhccccccce
Q 015310          162 SVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLK--GTPVLGLPTVESLRQTYKVEHINADTK  239 (409)
Q Consensus       162 ~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~--~~sAPGQ~~~~~l~~~~~~~~i~~~~~  239 (409)
                      ||++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++  .++||||++++++++++++.+++.+++
T Consensus       174 ~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~~l~~~~~~~~~~~~t~  253 (529)
T PLN02520        174 TALDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQIGPDTK  253 (529)
T ss_pred             CCCCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHHHHHHHhhhhcccCCce
Confidence            999999999999988878899999999999999999999999999999987  459999999999999999999998899


Q ss_pred             EEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhcc
Q 015310          240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAA  319 (409)
Q Consensus       240 ~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igA  319 (409)
                      +|||||+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|+|+|||||||+++++++|++|+.|+.+||
T Consensus       254 ~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~~~~~A~~iGA  333 (529)
T PLN02520        254 VYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDEVDPIAKSIGA  333 (529)
T ss_pred             EEEEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHHHHHhccCCHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeC
Q 015310          320 VNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       320 vNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR  399 (409)
                      ||||++++++|+|+||||||.||+++|++.+...+.   .+..+.++++|+++|+|+||+|||++++|.+.|++|+++||
T Consensus       334 VNTvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~---~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR  410 (529)
T PLN02520        334 INTIIRRPSDGKLVGYNTDYIGAISAIEDGLRASGS---SPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANR  410 (529)
T ss_pred             ceEEEEeCCCCEEEEEcccHHHHHHHHHhhhccccc---ccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcC
Confidence            999998622789999999999999999764321000   00012457789999999999999999999999999999999


Q ss_pred             ChHHHHhhh
Q 015310          400 DFEQSLLLL  408 (409)
Q Consensus       400 ~~~ka~~la  408 (409)
                      +.+++++|+
T Consensus       411 ~~e~a~~la  419 (529)
T PLN02520        411 TYERAKELA  419 (529)
T ss_pred             CHHHHHHHH
Confidence            999999875

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=100.00  E-value=2.3e-91  Score=723.53  Aligned_cols=368  Identities=26%  Similarity=0.445  Sum_probs=336.1

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      +|||||++++.+|++.+++.+. .++|+||||+|+|++.++. ++..+++..+.||+ |+|+.+     ++++++|+++|
T Consensus         1 ~icv~i~~~~~~e~~~~~~~~~-~~~D~vE~R~D~~~~~~~~-~~~~l~~~~~~pil-T~R~~~-----~~~~~~~~~~l   72 (477)
T PRK09310          1 MLCATISGPSFLEAKQQILRSL-KLVDCIELRVDLLLSLSDL-ELKKLIELAPIPIL-TWKKHE-----SCSQAAWIDKM   72 (477)
T ss_pred             CEEEEecCCCHHHHHHHHHHhc-ccCCEEEEEehhhccCCHH-HHHHHHhcCCCceE-EeccCc-----cCCHHHHHHHH
Confidence            6999999999999999999886 6799999999999877554 37777664466766 999987     46899999999


Q ss_pred             HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHH
Q 015310           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIAR  171 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~  171 (409)
                      +.+++.|+||||||++.+++.++++..+ ++++|+|+|||||+.    +++.+++++|+++||||+|||+||++.+|+++
T Consensus        73 ~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~~----~~l~~~~~~~~~~gaDi~Kia~~a~~~~D~l~  147 (477)
T PRK09310         73 QSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSEH----EDIIQLYNEMLASAADYYKIAVSSSSSTDLLN  147 (477)
T ss_pred             HHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCCc----chHHHHHHHHHHcCCCEEEEeeCCCCHHHHHH
Confidence            9999999999999999988887777544 359999999999942    68999999999999999999999999999999


Q ss_pred             HHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCC--CCCCCCCCHHHHHhhhhhccccccceEEeeeccCCc
Q 015310          172 IFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVG  249 (409)
Q Consensus       172 ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~--~sAPGQ~~~~~l~~~~~~~~i~~~~~~~~viG~pi~  249 (409)
                      +++++.+.+.|+|+||||+.|++||+++++|||++||+++..  ++||||++++++. .+++.+++.++++|||+|+||+
T Consensus       148 ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~~l~-~~~~~~~~~~t~~~~liG~pi~  226 (477)
T PRK09310        148 IIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLEHLL-FYNYANLSAQSPIYGLIGDPVD  226 (477)
T ss_pred             HHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHHHHH-hcchhccCCCceEEEEECCCcc
Confidence            999998888899999999999999999999999999999865  4699999999998 4678888888999999999999


Q ss_pred             ccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeC
Q 015310          250 HSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRP  327 (409)
Q Consensus       250 hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~  327 (409)
                      ||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||++|++++|++|+.|+.+||||||+++ 
T Consensus       227 hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~~d~~~~~A~~iGAVNTv~~~-  305 (477)
T PRK09310        227 RSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR-  305 (477)
T ss_pred             cccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHhccCCHHHHHhCcceEEEee-
Confidence            99999999999999999999999988  479999999999999999999999999999999999999999999999987 


Q ss_pred             CCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          328 SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       328 ~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                       +|+|+||||||.||+.+|++.             +.++++++++|+|+||+|+++++.|.+.|++|+++||+.++++++
T Consensus       306 -~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~l  371 (477)
T PRK09310        306 -NGKIEGYNTDGEGLFSLLKQK-------------NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEAL  371 (477)
T ss_pred             -CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence             999999999999999998653             145678999999999999999999999999999999999998876


Q ss_pred             h
Q 015310          408 L  408 (409)
Q Consensus       408 a  408 (409)
                      +
T Consensus       372 a  372 (477)
T PRK09310        372 A  372 (477)
T ss_pred             H
Confidence            4

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=2.3e-57  Score=434.24  Aligned_cols=228  Identities=24%  Similarity=0.398  Sum_probs=207.3

Q ss_pred             CCCCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChh----HHHHHHhcC-CCcEEEEeccCCCCCCC
Q 015310            6 ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK----DLEIILTKK-PLPVLIVYRPKWAGGLY   80 (409)
Q Consensus         6 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~----~l~~l~~~~-~~PiI~T~R~~~eGG~~   80 (409)
                      ...++|+|||||.+++.+|++++++++...++|+||||+|+|.+.++.+    .+..+++.. ++|+|||+|+++|||.+
T Consensus        11 ~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~   90 (253)
T PRK02412         11 IGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEI   90 (253)
T ss_pred             eCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCC
Confidence            4578999999999999999999999888889999999999998754432    233444433 68999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcC-CcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 015310           81 EGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK  158 (409)
Q Consensus        81 ~~~~~~~~~ll~~~~~~g-~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivK  158 (409)
                      +.++++|+++|+.+++.| +||||||++.+.+.+++++ .+++.++++|+|||||++||+.++|.+++++|+++||||+|
T Consensus        91 ~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivK  170 (253)
T PRK02412         91 ALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVK  170 (253)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEE
Confidence            999999999999999999 9999999999888888887 45678999999999999999999999999999999999999


Q ss_pred             EEeecCCHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhcc
Q 015310          159 LVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH  233 (409)
Q Consensus       159 ia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~  233 (409)
                      +|+||++.+|++++++++.+     .+.|+|+|+||+.|++||+++++|||++||+++++++||||+++++|+++++.++
T Consensus       171 ia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~sAPGQ~~~~el~~i~~~l~  250 (253)
T PRK02412        171 IAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVEDLRRILEILH  250 (253)
T ss_pred             EEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCCCCCCCCCHHHHHHHHHHhc
Confidence            99999999999999998754     3689999999999999999999999999999999999999999999999998765

>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-56  Score=415.63  Aligned_cols=223  Identities=23%  Similarity=0.383  Sum_probs=200.6

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHH
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR   87 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~   87 (409)
                      +|+||+|+.+.+.+++.++++.....++|++|||+|+|+.. +..+....+++. ...|+|||+|+.+|||.|++++++|
T Consensus         1 ~~~i~~~v~~~~~~~~~e~~~~~~~~~~Di~E~RvD~l~~~~~~~~~~~~~~e~~~~~~~IfT~R~~~EGG~~~~~~~~~   80 (231)
T COG0710           1 MPKIIVPVVGLDIAELKEQAEKSKELDADIVELRVDLLESNVEVLEVAKALREKDPDKPLIFTFRTVKEGGEFPGSEEEY   80 (231)
T ss_pred             CCEEEEEeecCCHHHHHHHHHHhhccCCCEEEEeechhcccchHHHHHHHHHHhccCCceEEEEeehhhcCCCCCCHHHH
Confidence            58999999999999999999999999999999999999922 112333444443 3679999999999999999999999


Q ss_pred             HHHHHHHHHcC-CcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015310           88 LEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI  166 (409)
Q Consensus        88 ~~ll~~~~~~g-~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~  166 (409)
                      +++++.+++.+ ++|||||++.+.+.+++++..++ ..++|+|||||++||+++++.+++.+|.+.||||+|+|+||++.
T Consensus        81 i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~-~~~vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivKiAvm~~~~  159 (231)
T COG0710          81 IELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAK-KHGVIVSYHDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSK  159 (231)
T ss_pred             HHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccc-cCCEEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEEEEecCCCH
Confidence            99999999986 99999999999887777774432 22399999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcc---CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhcc
Q 015310          167 TEIARIFQLLSH---CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH  233 (409)
Q Consensus       167 ~D~~~ll~~~~~---~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~  233 (409)
                      +|++++++++..   ++.|+|+||||+.|++||+++++|||++||+++++++||||++++++++++..++
T Consensus       160 ~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~sAPGQi~v~~l~~~~~~l~  229 (231)
T COG0710         160 EDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKPSAPGQISVDELRKILTLLG  229 (231)
T ss_pred             HHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCCCCCCCCCHHHHHHHHHHhh
Confidence            999999999886   6899999999999999999999999999999999999999999999999987654

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I

Probab=100.00  E-value=1.1e-55  Score=416.91  Aligned_cols=217  Identities=29%  Similarity=0.504  Sum_probs=194.8

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHH----Hh-cCCCcEEEEeccCCCCCCCCCCHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII----LT-KKPLPVLIVYRPKWAGGLYEGDEHK   86 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l----~~-~~~~PiI~T~R~~~eGG~~~~~~~~   86 (409)
                      +|||||++++.+++..+++++ ..|||+||||+|+|.+..+.+.+..+    +. ..++|+|||+|+++|||.++.++++
T Consensus         1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRlD~l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~~~   79 (228)
T TIGR01093         1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRVDLLKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNEEE   79 (228)
T ss_pred             CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEechhcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHH
Confidence            599999999999999999987 78999999999999875433222222    11 1478999999999999999999999


Q ss_pred             HHHHHHHH-HHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310           87 RLEALHLA-EDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus        87 ~~~ll~~~-~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                      |+++++.+ .+.++||||||++.+++..++++ .++++++|+|+|||||++||+.++|.+++++|+++||||+|+|+||+
T Consensus        80 ~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~  159 (228)
T TIGR01093        80 YLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMAN  159 (228)
T ss_pred             HHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccC
Confidence            99999998 56679999999999888887777 45678999999999999999999999999999999999999999999


Q ss_pred             CHhHHHHHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhh
Q 015310          165 DITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTY  229 (409)
Q Consensus       165 ~~~D~~~ll~~~~~~----~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~  229 (409)
                      +.+|+++|++++.+.    ++|+|+|+||+.|++||+++++|||++||++++++|||||+++++|+++|
T Consensus       160 ~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~  228 (228)
T TIGR01093       160 SKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLRELL  228 (228)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCCCCCCCCcCHHHHHhhC
Confidence            999999999998654    57999999999999999999999999999999999999999999999875

Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=100.00  E-value=9.5e-55  Score=409.65  Aligned_cols=217  Identities=34%  Similarity=0.560  Sum_probs=186.5

Q ss_pred             EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (409)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (409)
                      ||||++++.+|++++++++...++|+||||+|+|.+.+.   .+++..+++..++|+|||+|+++|||.++.++++|+++
T Consensus         1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~l   80 (224)
T PF01487_consen    1 CVPLTGSTLEELLAELEEAESSGADAVELRLDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLEL   80 (224)
T ss_dssp             EEEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHH
T ss_pred             CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHH
Confidence            999999999999999999877699999999999996322   35677777777999999999999999999999999999


Q ss_pred             HHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHH
Q 015310           91 LHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIA  170 (409)
Q Consensus        91 l~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~  170 (409)
                      ++.+++.|+||||||++..++........+.+++++|+|||||++||+++++.+++++|+++||||+|+|+||++.+|++
T Consensus        81 l~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~  160 (224)
T PF01487_consen   81 LERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVL  160 (224)
T ss_dssp             HHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHH
T ss_pred             HHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHH
Confidence            99999999999999999665544333345678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhh
Q 015310          171 RIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK  230 (409)
Q Consensus       171 ~ll~~~~~~----~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~  230 (409)
                      +|++++.+.    +.|+|+|+||+.|++||+++++|||++||++.++++||||+++++|+++|+
T Consensus       161 ~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~sApGQl~~~~l~~~~~  224 (224)
T PF01487_consen  161 RLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGEASAPGQLTLEELREILH  224 (224)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS-SSTT-EBHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCCCCCCCCcHHHHHHHhC
Confidence            999998655    589999999999999999999999999999989999999999999999874

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>PRK13575 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=7.7e-54  Score=405.11  Aligned_cols=220  Identities=20%  Similarity=0.341  Sum_probs=187.7

Q ss_pred             CeeEEEeeccCC-HHHH-HHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHH----Hh-cCCCcEEEEeccCCCCCCCCC
Q 015310           10 TTMICAPLMAQS-VEQV-LSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII----LT-KKPLPVLIVYRPKWAGGLYEG   82 (409)
Q Consensus        10 ~~~icv~l~~~~-~~e~-~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l----~~-~~~~PiI~T~R~~~eGG~~~~   82 (409)
                      .+.||+++.... .++. .++++.. ..+||+||||+|+|++.+. +++..+    ++ ..++|+|||+|+++|||.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vElRlD~l~~~~~-~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~~~~   80 (238)
T PRK13575          3 HVEVAATIAPQLSIEETLIQKINHR-IDAIDIIELRIDQWENVTV-DQLAEMITKLKVLQDSFKLLVTYRTKLQGGYGQF   80 (238)
T ss_pred             ceeEeeeeccccccchhHHHHHHhc-CCCCCEEEEEeccccCCCH-HHHHHHHHHHHhhcCCCCEEEEeCChhhCCCCCC
Confidence            456677777664 5555 4445443 5689999999999987543 234433    22 247899999999999999999


Q ss_pred             CHHHHHHHHHHHHHcC-CcEEEEeccC--ccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 015310           83 DEHKRLEALHLAEDLG-ADYVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK  158 (409)
Q Consensus        83 ~~~~~~~ll~~~~~~g-~dyvDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivK  158 (409)
                      ++++|.++++.++..+ +||||||++.  ..+..+++. .+++.++++|+|||||++||+.++|.+++++|+++||||+|
T Consensus        81 ~~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~l~~~~~~m~~~gaDi~K  160 (238)
T PRK13575         81 TNDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDELKFIFFKMQKFNPEYVK  160 (238)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            9999999999888776 8999999986  344556665 45678999999999999999999999999999999999999


Q ss_pred             EEeecCCHhHHHHHHHHhcc----CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhh
Q 015310          159 LVFSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       159 ia~~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~  231 (409)
                      +|+||++.+|+++|++++.+    .+.|+|+|+||+.|++||+++++|||++||++++++|||||+++++|++++++
T Consensus       161 iAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~sAPGQi~v~~l~~i~~~  237 (238)
T PRK13575        161 LAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEPQAPGQIHVTDLKAQVTL  237 (238)
T ss_pred             EEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCCCCCCCCCHHHHHHHHHh
Confidence            99999999999999999754    36799999999999999999999999999999999999999999999999864

>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase

Probab=100.00  E-value=2.3e-53  Score=400.59  Aligned_cols=215  Identities=36%  Similarity=0.561  Sum_probs=194.5

Q ss_pred             eEEEeeccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCCC---ChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHH
Q 015310           12 MICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNFQ---PGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (409)
Q Consensus        12 ~icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~---~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (409)
                      +||+||.++ +.+|..++++...  |+|+||||+|+|.+..   ..++++.+++..+.|+|||+|+++|||.++.++++|
T Consensus         1 ~i~~~i~~~~~~~e~~~~~~~~~--~aD~vElR~D~~~~~~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~   78 (225)
T cd00502           1 KICVPLTGPDLLEEALSLLELLL--GADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEY   78 (225)
T ss_pred             CEEEEecCCCCHHHHHHHHHHhc--CCCEEEEEEeeccccchHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHH
Confidence            589999999 9999988776643  8999999999998752   234667777666799999999999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015310           88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI  166 (409)
Q Consensus        88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~  166 (409)
                      +++++.++++|+||||||++.  +.+++++ .++++++|+|+|||+|++||+.++|.+++++|+++||||+|+|+||++.
T Consensus        79 ~~ll~~~~~~~~d~vDiEl~~--~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~~~  156 (225)
T cd00502          79 LELLEEALKLGPDYVDIELDS--ALLEELINSRKKGNTKIIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSI  156 (225)
T ss_pred             HHHHHHHHHHCCCEEEEEecc--hHHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCH
Confidence            999999999999999999988  3444555 4557899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhh
Q 015310          167 TEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK  230 (409)
Q Consensus       167 ~D~~~ll~~~~~~----~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~  230 (409)
                      +|++++++++.+.    +.|+|+|+||+.|++||++++.|||++||+++++++||||+++++++++++
T Consensus       157 ~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~~~~~l~~~~~  224 (225)
T cd00502         157 EDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEPSAPGQLSVEELKQALS  224 (225)
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCCCCCCCCcCHHHHHHHHh
Confidence            9999999998655    469999999999999999999999999999999999999999999999875

) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.

>PRK13576 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=6.1e-53  Score=392.07  Aligned_cols=206  Identities=17%  Similarity=0.161  Sum_probs=177.4

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHH
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL   88 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   88 (409)
                      ++|+||+||++++.+++.++++.   .+||+||||+|+|++....  +..+++..+.|+|||+|+++|||.+++++++|+
T Consensus         1 ~~p~i~vpi~~~~~e~i~~~~~~---~~aD~vE~RlD~l~~~~~~--~~~~l~~~~~plI~T~R~~~EGG~~~~~~~~r~   75 (216)
T PRK13576          1 MRPLIVASLPIKKIEDLKLIGNF---LDADLIELRLDYLKDREVS--VIEFLDKYKDKLIVTLRDKAEGGINELDDELKI   75 (216)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhc---CCCCEEEEEeccccccchh--HHHHHHhcCCCEEEEeCChHHCCCCcCCHHHHH
Confidence            58999999999999999987654   5899999999999876543  333444456799999999999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH-h
Q 015310           89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI-T  167 (409)
Q Consensus        89 ~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~-~  167 (409)
                      ++|+.+++.+. ++|||++...+..       ..+.++|+|||||++||+.++|.+++++|++ ||||+|+|+||++. .
T Consensus        76 ~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~l~~m~~-gaDI~KiA~mp~~~~~  146 (216)
T PRK13576         76 SLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEIVSKFYE-KAFSVKIAVLGLKGYK  146 (216)
T ss_pred             HHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHHHHHHHh-cCCEEEEEeCCCCchH
Confidence            99999999985 7799997543211       1346799999999999999999999999998 99999999999985 7


Q ss_pred             HHH-HHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhccc
Q 015310          168 EIA-RIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHI  234 (409)
Q Consensus       168 D~~-~ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~i  234 (409)
                      |++ +|++   .  ..+|+|+||+.| +||+++++|||++||++++++|||||+++++|++++++++-
T Consensus       147 d~l~~Ll~---~--~~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~sAPGQi~v~~l~~i~~~l~~  208 (216)
T PRK13576        147 EVLLPLLE---Y--ENVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEPTAQGQLHYKKVKQILNYLNN  208 (216)
T ss_pred             hHHHHHhc---c--cCccEEEcCCcc-HHHHHHHHhCCeeEEEecCCCCCCCCccHHHHHHHHHHHHH
Confidence            776 6664   2  245889999999 99999999999999999999999999999999999987643

>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=3.6e-48  Score=363.44  Aligned_cols=206  Identities=15%  Similarity=0.243  Sum_probs=174.5

Q ss_pred             cCCCCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh--hHHHHHHhcCCCcEEEEeccCCCCCCCCC
Q 015310            5 NITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG--KDLEIILTKKPLPVLIVYRPKWAGGLYEG   82 (409)
Q Consensus         5 ~~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~--~~l~~l~~~~~~PiI~T~R~~~eGG~~~~   82 (409)
                      ..-.++|+|||||++++.+|++.+++.+...+||+||||+|+|.+.+..  ..+...++..++|+|||+|+.        
T Consensus        15 ~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~~~~~~~~~~~~~l~~~~~p~I~T~R~~--------   86 (229)
T PRK01261         15 VIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEMDIDYIFTYRGV--------   86 (229)
T ss_pred             EeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCCCChHHHHHHHHHHhhcCCCEEEEEcCC--------
Confidence            3446899999999999999999999998878999999999999875432  122223333489999999943        


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015310           83 DEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS  162 (409)
Q Consensus        83 ~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~  162 (409)
                      ++   .++++.+++.++||||||++...+    + ..+..++|+|+|||    ||+.++|.+++++|+++||||+|+|+|
T Consensus        87 ~~---~~~l~~a~~~~~d~vDIEl~~~~~----~-~~~~~~~kvIvS~H----tp~~eeL~~~l~~m~~~gaDI~KiAvm  154 (229)
T PRK01261         87 DA---RKYYETAIDKMPPAVDLDINLIGK----L-EFRPRNTMLMVSYH----TNNSDNMPAILDIMNEKNPDYVKVACN  154 (229)
T ss_pred             CH---HHHHHHHHhhCCCEEEEEcccchh----h-hhhcCCCeEEEEeC----CCCHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            22   478888988779999999987332    2 23468999999999    788999999999999999999999999


Q ss_pred             cCCHhHHHHHHHH----hccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhc
Q 015310          163 VNDITEIARIFQL----LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (409)
Q Consensus       163 ~~~~~D~~~ll~~----~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~  232 (409)
                      |++.+|+++++..    ..+.+.|+|+||||+  ++||+++++|||++||++++++|||||+++++|+++|+.+
T Consensus       155 p~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~sAPGQi~v~~l~~~~~~~  226 (229)
T PRK01261        155 YNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNETAPGQPKRDYYESAFIKY  226 (229)
T ss_pred             CCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCCCCCCCCCHHHHHHHHHHh
Confidence            9999998877743    334578999999999  9999999999999999999999999999999999999865

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=3.8e-48  Score=373.21  Aligned_cols=163  Identities=37%  Similarity=0.616  Sum_probs=150.9

Q ss_pred             ccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCcc--cHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhc
Q 015310          234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  311 (409)
Q Consensus       234 i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~  311 (409)
                      ++..+++|||||+||+||+||.|||++|+++|+++.|.+++++  +|+.+++.++.+++.|+|||||||+++++++|++|
T Consensus         2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~   81 (283)
T COG0169           2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS   81 (283)
T ss_pred             CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence            3456789999999999999999999999999999999999984  99999999999999999999999999999999999


Q ss_pred             HHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCC
Q 015310          312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  391 (409)
Q Consensus       312 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G  391 (409)
                      +.|+.+||||||+++. +|+|+||||||.||.++|++...           ..+.++++++|+|||||||||+++|+++|
T Consensus        82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~~-----------~~~~~~~~vlilGAGGAarAv~~aL~~~g  149 (283)
T COG0169          82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFGL-----------PVDVTGKRVLILGAGGAARAVAFALAEAG  149 (283)
T ss_pred             HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcCC-----------CcccCCCEEEEECCcHHHHHHHHHHHHcC
Confidence            9999999999999982 49999999999999999976421           13456899999999999999999999999


Q ss_pred             C-eEEEEeCChHHHHhhh
Q 015310          392 A-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       392 ~-~i~v~nR~~~ka~~la  408 (409)
                      + +|+|+|||.+||++|+
T Consensus       150 ~~~i~V~NRt~~ra~~La  167 (283)
T COG0169         150 AKRITVVNRTRERAEELA  167 (283)
T ss_pred             CCEEEEEeCCHHHHHHHH
Confidence            8 8999999999999996

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=100.00  E-value=1.8e-47  Score=370.94  Aligned_cols=158  Identities=28%  Similarity=0.440  Sum_probs=146.8

Q ss_pred             cceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc-------ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhh
Q 015310          237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE  309 (409)
Q Consensus       237 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~  309 (409)
                      ++++|||||+||+||+||.|||++|+++|+|+.|.++++       ++++++++.++.++|.|+|||||||+++++++|+
T Consensus         3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~   82 (283)
T PRK14027          3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_pred             CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence            478999999999999999999999999999999999985       4789999999889999999999999999999999


Q ss_pred             hcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHh
Q 015310          310 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS  389 (409)
Q Consensus       310 ~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~  389 (409)
                      +|+.|+.+||||||+++. +|+|+||||||.||+++|++..             .+.++++++|+||||+||||+|+|.+
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~Gf~~~L~~~~-------------~~~~~k~vlilGaGGaarAi~~aL~~  148 (283)
T PRK14027         83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-------------PNAKLDSVVQVGAGGVGNAVAYALVT  148 (283)
T ss_pred             CCHHHHHhCCceEEEECC-CCcEEEEcCCHHHHHHHHHhcC-------------cCcCCCeEEEECCcHHHHHHHHHHHH
Confidence            999999999999999852 8999999999999999997521             24568999999999999999999999


Q ss_pred             CCC-eEEEEeCChHHHHhhh
Q 015310          390 RGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       390 ~G~-~i~v~nR~~~ka~~la  408 (409)
                      +|+ +|+|+|||.+|+++|+
T Consensus       149 ~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        149 HGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             CCCCEEEEEcCCHHHHHHHH
Confidence            999 8999999999999986

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=100.00  E-value=9.3e-47  Score=367.09  Aligned_cols=159  Identities=30%  Similarity=0.535  Sum_probs=147.4

Q ss_pred             cccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcH
Q 015310          235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (409)
Q Consensus       235 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~  312 (409)
                      +..+++|||||+||+||+||.|||++|+++|+|+.|.++++  ++|+++++.++..+|.|+|||||||++|++++|++|+
T Consensus         4 ~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~~   83 (288)
T PRK12749          4 TAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTP   83 (288)
T ss_pred             CCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCCH
Confidence            44678999999999999999999999999999999999998  4799999999888999999999999999999999999


Q ss_pred             HHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC
Q 015310          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (409)
Q Consensus       313 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~  392 (409)
                      .|+.+||||||+++  +|+|+||||||.||+++|++.             +.++++|+++|+||||+||||+++|..+|+
T Consensus        84 ~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~-------------~~~~~~k~vlvlGaGGaarAi~~~l~~~g~  148 (288)
T PRK12749         84 AAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-------------GFDIKGKTMVLLGAGGASTAIGAQGAIEGL  148 (288)
T ss_pred             HHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            99999999999876  899999999999999998752             145678999999999999999999999999


Q ss_pred             -eEEEEeCC---hHHHHhhh
Q 015310          393 -RVVIFDID---FEQSLLLL  408 (409)
Q Consensus       393 -~i~v~nR~---~~ka~~la  408 (409)
                       +|+|+||+   .+|+++|+
T Consensus       149 ~~i~i~nRt~~~~~ka~~la  168 (288)
T PRK12749        149 KEIKLFNRRDEFFDKALAFA  168 (288)
T ss_pred             CEEEEEeCCccHHHHHHHHH
Confidence             99999999   46888875

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=2.9e-46  Score=363.39  Aligned_cols=159  Identities=30%  Similarity=0.429  Sum_probs=147.8

Q ss_pred             cccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc-------ccHHHHHHHhcCCCCCeEEEcccchHHHHhhh
Q 015310          235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC  307 (409)
Q Consensus       235 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~-------~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~  307 (409)
                      +..+++|||||+||+||+||.|||++|+++|+|+.|.++++       ++++++++.++.++|.|+|||||||+++++++
T Consensus         2 ~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~   81 (284)
T PRK12549          2 SRPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHL   81 (284)
T ss_pred             CccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHh
Confidence            34578999999999999999999999999999999999986       36899999998889999999999999999999


Q ss_pred             hhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHH
Q 015310          308 DEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGA  387 (409)
Q Consensus       308 d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL  387 (409)
                      |++|+.|+.+||||||+++  +|+|+||||||.||+++|++..             .+.++++++|+|+||+||+++++|
T Consensus        82 D~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-------------~~~~~k~vlIlGaGGaaraia~aL  146 (284)
T PRK12549         82 DELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-------------PDASLERVVQLGAGGAGAAVAHAL  146 (284)
T ss_pred             ccCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-------------cCccCCEEEEECCcHHHHHHHHHH
Confidence            9999999999999999886  8999999999999999997532             245678999999999999999999


Q ss_pred             HhCCC-eEEEEeCChHHHHhhh
Q 015310          388 KSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       388 ~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      .++|+ +|+|+||+.+|+++|+
T Consensus       147 ~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        147 LTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             HHcCCCEEEEECCCHHHHHHHH
Confidence            99999 8999999999999886

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=100.00  E-value=1.3e-45  Score=358.78  Aligned_cols=159  Identities=31%  Similarity=0.473  Sum_probs=143.7

Q ss_pred             cceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc---ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHH
Q 015310          237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV---DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPL  313 (409)
Q Consensus       237 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~---~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~  313 (409)
                      .+++|||||+||+||+||.|||++|+++|+|+.|.++++   +++.++++.++ .+|.|+|||||||+++++++|++|+.
T Consensus         4 ~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~   82 (282)
T TIGR01809         4 GPKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDR   82 (282)
T ss_pred             CCeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHH
Confidence            367899999999999999999999999999999999987   36888888774 49999999999999999999999999


Q ss_pred             HHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-
Q 015310          314 AQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-  392 (409)
Q Consensus       314 A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-  392 (409)
                      |+.+||||||++++ +|+|+||||||.||+.+|++...           ..++++++++||||||+|||++++|.++|+ 
T Consensus        83 A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~~-----------~~~~~~k~vlvlGaGGaarai~~aL~~~G~~  150 (282)
T TIGR01809        83 ASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANIGK-----------FEPLAGFRGLVIGAGGTSRAAVYALASLGVT  150 (282)
T ss_pred             HHHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhhCC-----------ccccCCceEEEEcCcHHHHHHHHHHHHcCCC
Confidence            99999999999852 88999999999999999975310           013578999999999999999999999999 


Q ss_pred             eEEEEeCChHHHHhhh
Q 015310          393 RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       393 ~i~v~nR~~~ka~~la  408 (409)
                      +|+|+|||.+|+++|+
T Consensus       151 ~i~I~nRt~~ka~~La  166 (282)
T TIGR01809       151 DITVINRNPDKLSRLV  166 (282)
T ss_pred             eEEEEeCCHHHHHHHH
Confidence            8999999999999986

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=100.00  E-value=5.2e-45  Score=355.80  Aligned_cols=160  Identities=32%  Similarity=0.521  Sum_probs=147.6

Q ss_pred             ccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhc
Q 015310          234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  311 (409)
Q Consensus       234 i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~  311 (409)
                      ++..+++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|+|+|||||||+++++++|++|
T Consensus         5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~   84 (289)
T PRK12548          5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS   84 (289)
T ss_pred             cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence            455678899999999999999999999999999999999998  479999999988899999999999999999999999


Q ss_pred             HHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCC
Q 015310          312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  391 (409)
Q Consensus       312 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G  391 (409)
                      +.|+.+||||||+++  +|+|+||||||.||+.+|++.             ...+++|+++|+||||+|||++++|.+.|
T Consensus        85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlI~GAGGagrAia~~La~~G  149 (289)
T PRK12548         85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREH-------------GVDVKGKKLTVIGAGGAATAIQVQCALDG  149 (289)
T ss_pred             HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999887  899999999999999998753             13467899999999999999999999999


Q ss_pred             C-eEEEEeCCh---HHHHhhh
Q 015310          392 A-RVVIFDIDF---EQSLLLL  408 (409)
Q Consensus       392 ~-~i~v~nR~~---~ka~~la  408 (409)
                      + +|+|+||+.   +++++++
T Consensus       150 ~~~V~I~~R~~~~~~~a~~l~  170 (289)
T PRK12548        150 AKEITIFNIKDDFYERAEQTA  170 (289)
T ss_pred             CCEEEEEeCCchHHHHHHHHH
Confidence            9 699999997   7887764

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=1.5e-44  Score=348.64  Aligned_cols=158  Identities=31%  Similarity=0.455  Sum_probs=145.1

Q ss_pred             cccccce-EEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhc
Q 015310          233 HINADTK-VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  311 (409)
Q Consensus       233 ~i~~~~~-~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~  311 (409)
                      .++++++ +|||||+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++++|++|
T Consensus         4 ~~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~   81 (272)
T PRK12550          4 MINKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELD   81 (272)
T ss_pred             cCCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCC
Confidence            3456677 49999999  77889999999999999999999998899999999988899999999999999999999999


Q ss_pred             HHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCC
Q 015310          312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  391 (409)
Q Consensus       312 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G  391 (409)
                      +.|+.+||||||+++  +|+|+||||||.||+++|++.    +         .. .+++++|+||||+|||++++|.++|
T Consensus        82 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~----~---------~~-~~~~vlilGaGGaarAi~~aL~~~g  145 (272)
T PRK12550         82 PSAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASY----Q---------VP-PDLVVALRGSGGMAKAVAAALRDAG  145 (272)
T ss_pred             HHHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhc----C---------CC-CCCeEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999887  899999999999999998752    1         22 3568999999999999999999999


Q ss_pred             C-eEEEEeCChHHHHhhh
Q 015310          392 A-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       392 ~-~i~v~nR~~~ka~~la  408 (409)
                      + +|+|+||+.+|+++|+
T Consensus       146 ~~~i~i~nR~~~~a~~la  163 (272)
T PRK12550        146 FTDGTIVARNEKTGKALA  163 (272)
T ss_pred             CCEEEEEeCCHHHHHHHH
Confidence            9 8999999999999986

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=1.2e-44  Score=351.54  Aligned_cols=160  Identities=33%  Similarity=0.611  Sum_probs=148.9

Q ss_pred             cccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcH
Q 015310          235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (409)
Q Consensus       235 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~  312 (409)
                      +..+++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++++|++|+
T Consensus         2 ~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~   81 (278)
T PRK00258          2 TGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELSE   81 (278)
T ss_pred             CCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCCH
Confidence            45678999999999999999999999999999999999999  6899999999888999999999999999999999999


Q ss_pred             HHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC
Q 015310          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (409)
Q Consensus       313 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~  392 (409)
                      .|+.+||||||+++  +|+|+||||||.||+++|++.+            +.++++++++|+|+||+||+++++|..+|+
T Consensus        82 ~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~------------~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~  147 (278)
T PRK00258         82 RARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERL------------GVDLKGKRILILGAGGAARAVILPLLDLGV  147 (278)
T ss_pred             HHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhcc------------CCCCCCCEEEEEcCcHHHHHHHHHHHHcCC
Confidence            99999999999976  8999999999999999987532            135678999999999999999999999996


Q ss_pred             -eEEEEeCChHHHHhhh
Q 015310          393 -RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       393 -~i~v~nR~~~ka~~la  408 (409)
                       +|+|+||+.+++++++
T Consensus       148 ~~V~v~~R~~~~a~~l~  164 (278)
T PRK00258        148 AEITIVNRTVERAEELA  164 (278)
T ss_pred             CEEEEEeCCHHHHHHHH
Confidence             9999999999998875

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=100.00  E-value=5.3e-43  Score=338.67  Aligned_cols=155  Identities=34%  Similarity=0.588  Sum_probs=144.3

Q ss_pred             eEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHH
Q 015310          239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  316 (409)
Q Consensus       239 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~  316 (409)
                      ++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||+++++++|++|+.|+.
T Consensus         1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~   80 (270)
T TIGR00507         1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL   80 (270)
T ss_pred             CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence            4799999999999999999999999999999999998  48999999998889999999999999999999999999999


Q ss_pred             hccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEE
Q 015310          317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  396 (409)
Q Consensus       317 igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v  396 (409)
                      +||||||+++  +|+|+||||||.||+++|++. .            ...++++++|+|+||+|++++++|.+.|++|+|
T Consensus        81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~-~------------~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v  145 (270)
T TIGR00507        81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERL-I------------PLRPNQRVLIIGAGGAARAVALPLLKADCNVII  145 (270)
T ss_pred             hCCceEEEee--CCEEEEEcCCHHHHHHHHHhc-C------------CCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Confidence            9999999977  899999999999999998752 1            234578999999999999999999999999999


Q ss_pred             EeCChHHHHhhh
Q 015310          397 FDIDFEQSLLLL  408 (409)
Q Consensus       397 ~nR~~~ka~~la  408 (409)
                      +||+.+++++++
T Consensus       146 ~~R~~~~~~~la  157 (270)
T TIGR00507       146 ANRTVSKAEELA  157 (270)
T ss_pred             EeCCHHHHHHHH
Confidence            999999998875

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]

Probab=99.96  E-value=6.5e-32  Score=267.71  Aligned_cols=338  Identities=13%  Similarity=0.011  Sum_probs=282.2

Q ss_pred             CCCcEEEEeccCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCH
Q 015310           63 KPLPVLIVYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE  139 (409)
Q Consensus        63 ~~~PiI~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~  139 (409)
                      ..+|.+++.|..||||.   +++...++..-+...++++.+|+|.|+....++...+-....+..+||.+.|+.+.+|  
T Consensus       148 sal~~L~~~~~~we~~~~~vveG~gg~~~~~~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rP--  225 (595)
T KOG0692|consen  148 SALKTLGLNVETWEENNRAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERP--  225 (595)
T ss_pred             hhHHHhccccceecCCCEEEEEcCCCeeeechhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCC--
Confidence            47899999999999998   7777766656677788899999999998877665544333444558999999999999  


Q ss_pred             hHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCCC--CCC
Q 015310          140 EDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGT--PVL  217 (409)
Q Consensus       140 ~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~--sAP  217 (409)
                        +-.++..+++.||||.|++.+...+-|+. ....+....+|+++.-||+.+..+|++.|.++.++||..++..  |+|
T Consensus       226 --i~~LV~~l~q~GadI~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~p  302 (595)
T KOG0692|consen  226 --IGDLVVGLKQLGADIECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVP  302 (595)
T ss_pred             --chHHHHHHHhcCCceEEeccCCCCceeee-ccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCcccccc
Confidence              67778888899999999999999999997 5555666689999999999999999999999999999999853  999


Q ss_pred             CCCCHHHHHhhh--hhccccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCCeEE-
Q 015310          218 GLPTVESLRQTY--KVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS-  294 (409)
Q Consensus       218 GQ~~~~~l~~~~--~~~~i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~n-  294 (409)
                      +|...-+|.+.+  ++.+..+.++.|++.|.|++|+.+|.+||.+|.+....+.|...-++..-.++..-...++.||+ 
T Consensus       303 yv~mt~~lme~fgvn~~~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~  382 (595)
T KOG0692|consen  303 YVEMTLKLMERFGVNVEHSTSWDRFYVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAE  382 (595)
T ss_pred             chhHHHHHHHHhCcCeEecCCCcceEeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHh
Confidence            999999999999  77888899999999999999999999999999999999988887665555555555567899998 


Q ss_pred             EcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCC--CCCCCCEEE
Q 015310          295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFG--SPLAGRMFV  372 (409)
Q Consensus       295 VT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~vl  372 (409)
                      |+.|||..+...+++++..+.-+||+|+...+..|+...++|||..|.+-++...+..  +.+|..-.+  ...-.++..
T Consensus       383 vl~pmgc~v~qt~~svtv~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svvA~~~~~~s--~gdptti~~~as~rvket~r  460 (595)
T KOG0692|consen  383 VLEPMGCKVSQTENSVTVTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVVALFAGLRS--SGDPTTIRDVASWRVKETER  460 (595)
T ss_pred             hhccccceeeeecccccccCCCCCcccceehhhhcccccccchhHhHhHHHHhhcccC--CCCCcccccccchhHHHHHH
Confidence            9999999999999999999999999999976644778999999999999998765431  111110000  122245788


Q ss_pred             EEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          373 LAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       373 vlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      |+|.|+..|+..+...+.+..++|++|+ +|+-+++
T Consensus       461 ~ia~~~el~klg~~~~E~~dg~~v~~~~-~k~lk~a  495 (595)
T KOG0692|consen  461 MIAICTELRKLGATVEEGSDGYCVITPP-EKKLKLA  495 (595)
T ss_pred             HHHHHHHHHHhcccccccCceEEEeCCc-hHhccch
Confidence            9999999999999999998899999999 7666554

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=99.95  E-value=7.9e-29  Score=197.57  Aligned_cols=81  Identities=40%  Similarity=0.815  Sum_probs=74.9

Q ss_pred             eeccCCcccCCHHhHHHHHHhcCCCceEeecCcc--cHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccc
Q 015310          243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAV  320 (409)
Q Consensus       243 viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~--~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAv  320 (409)
                      |+|+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++..+|.|+|||||||+++++++|++|+.|+.+|||
T Consensus         1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv   80 (83)
T PF08501_consen    1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV   80 (83)
T ss_dssp             EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred             CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence            6899999999999999999999999999999985  99999999988999999999999999999999999999999999


Q ss_pred             eEE
Q 015310          321 NTI  323 (409)
Q Consensus       321 Nti  323 (409)
                      |||
T Consensus        81 Ntv   83 (83)
T PF08501_consen   81 NTV   83 (83)
T ss_dssp             SEE
T ss_pred             ccC
Confidence            997

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.80  E-value=2.3e-19  Score=174.14  Aligned_cols=141  Identities=18%  Similarity=0.242  Sum_probs=119.7

Q ss_pred             eeeccCCcccCCHHhHHHHHHhcCCCceEeec--Cc--ccHHHHHHHhcCC-CCCeEEEcccchHHHHh--hhhhhcHHH
Q 015310          242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPM--FV--DDLKKFFSTYSSP-DFAGFSVGFPYKEAVMK--FCDEVHPLA  314 (409)
Q Consensus       242 ~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~--~~--~~l~~~~~~~~~~-~~~G~nVT~P~K~~i~~--~~d~~~~~A  314 (409)
                      -++|+.=+.-.--.+|+.+|+++|+++.|.++  ++  +++.+.++.++.. ++.|++||+|||+.+.+  ++|++ +.+
T Consensus        39 i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~a  117 (283)
T PRK14192         39 ILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SLA  117 (283)
T ss_pred             EEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CHH
Confidence            34554322222334899999999999999999  55  4788888888655 89999999999999999  99999 999


Q ss_pred             HHhccceEEEEeCCCCe------EEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHH
Q 015310          315 QAIAAVNTIIRRPSDGK------LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGA  387 (409)
Q Consensus       315 ~~igAvNti~~~~~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL  387 (409)
                      +.++++|++ +   +|+      ++|+||| .||++.|+..             +.+++||+|+|+|+|| +||++++.|
T Consensus       118 KDVdg~n~~-n---~G~l~~~~~~~~p~T~-~gii~~L~~~-------------~i~l~Gk~vvViG~gg~vGkpia~~L  179 (283)
T PRK14192        118 KDVDGVTCL-G---FGRMAMGEAAYGSATP-AGIMRLLKAY-------------NIELAGKHAVVVGRSAILGKPMAMML  179 (283)
T ss_pred             HhcCCCCcc-c---cCccccCCCcccCCcH-HHHHHHHHHc-------------CCCCCCCEEEEECCcHHHHHHHHHHH
Confidence            999999998 3   456      8999999 9999998753             2578999999999999 999999999


Q ss_pred             HhCCCeEEEEeCCh
Q 015310          388 KSRGARVVIFDIDF  401 (409)
Q Consensus       388 ~~~G~~i~v~nR~~  401 (409)
                      .+.|+.|+|++|..
T Consensus       180 ~~~gatVtv~~~~t  193 (283)
T PRK14192        180 LNANATVTICHSRT  193 (283)
T ss_pred             HhCCCEEEEEeCCc
Confidence            99999999999843

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.88  E-value=3.3e-09  Score=92.19  Aligned_cols=44  Identities=34%  Similarity=0.477  Sum_probs=42.1

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      ++++++++|+||||+||+++++|.++|+ +|+|+|||.+|+++|+
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~   53 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALA   53 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHH
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence            5789999999999999999999999999 7999999999999986

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.68  E-value=2.6e-08  Score=99.28  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=64.7

Q ss_pred             HHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHh-CCC-
Q 015310          315 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA-  392 (409)
Q Consensus       315 ~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~-~G~-  392 (409)
                      ..+|++||++..  ++.|.|+|||+.|++.+..  +.             ....++++|+|+|+.|++.+.++.. .++ 
T Consensus        96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-------------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~  158 (330)
T PRK08291         96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDASRAAVIGAGEQARLQLEALTLVRPIR  158 (330)
T ss_pred             CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCCEEEEECCCHHHHHHHHHHHhcCCCC
Confidence            356999999755  7889999999999999864  31             1234789999999999999999986 567 


Q ss_pred             eEEEEeCChHHHHhhh
Q 015310          393 RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       393 ~i~v~nR~~~ka~~la  408 (409)
                      +|+|+||+.+++++++
T Consensus       159 ~V~v~~R~~~~a~~l~  174 (330)
T PRK08291        159 EVRVWARDAAKAEAYA  174 (330)
T ss_pred             EEEEEcCCHHHHHHHH
Confidence            8999999999999875

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.57  E-value=8.8e-08  Score=95.37  Aligned_cols=76  Identities=16%  Similarity=0.180  Sum_probs=64.1

Q ss_pred             HhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHH-hCCC-e
Q 015310          316 AIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK-SRGA-R  393 (409)
Q Consensus       316 ~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~-~~G~-~  393 (409)
                      ..|++|+++..  ++.+.|+|||+.|++.+..  +.             ....++++|+|+|+.||+.+.+|. ..++ +
T Consensus        94 ~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la-------------~~~~~~v~iiGaG~qA~~~~~al~~~~~i~~  156 (326)
T TIGR02992        94 RTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDSSVVAIFGAGMQARLQLEALTLVRDIRS  156 (326)
T ss_pred             CCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCcEEEEECCCHHHHHHHHHHHHhCCccE
Confidence            45999999765  7889999999999999863  21             123578999999999999999997 4677 8


Q ss_pred             EEEEeCChHHHHhhh
Q 015310          394 VVIFDIDFEQSLLLL  408 (409)
Q Consensus       394 i~v~nR~~~ka~~la  408 (409)
                      |+|+||+.+|+++++
T Consensus       157 v~V~~R~~~~a~~~a  171 (326)
T TIGR02992       157 ARIWARDSAKAEALA  171 (326)
T ss_pred             EEEECCCHHHHHHHH
Confidence            999999999999875

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.42  E-value=8.3e-07  Score=78.11  Aligned_cols=59  Identities=37%  Similarity=0.590  Sum_probs=51.2

Q ss_pred             CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310          337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       337 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      |||+||.+++++.             +.+.++++++|+|+|++|++++.+|.+.|. +|++++|+.+++++++
T Consensus         1 td~~g~~~a~~~~-------------~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~   60 (155)
T cd01065           1 TDGLGFVRALEEA-------------GIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALA   60 (155)
T ss_pred             CCHHHHHHHHHhh-------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            8999999998753             134678899999999999999999999975 8999999999887754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.22  E-value=5.1e-07  Score=93.03  Aligned_cols=100  Identities=24%  Similarity=0.279  Sum_probs=76.5

Q ss_pred             chHHHHhhhhhhcHHHHHhccceEEEEe---C--CCCeEEEEcCcHHHH-----HHHHHHHHHhcCcCCCCCCCCCCCCC
Q 015310          299 YKEAVMKFCDEVHPLAQAIAAVNTIIRR---P--SDGKLIGYNTDCEAS-----ITAIEDAIKERGYKNGTASFGSPLAG  368 (409)
Q Consensus       299 ~K~~i~~~~d~~~~~A~~igAvNti~~~---~--~~g~l~G~NTD~~G~-----~~~l~~~l~~~~~~~~~~~~~~~~~~  368 (409)
                      =+.+|+++++.....|+..|++|+++..   .  .-++..+++|+..+.     ..+++....  .        ..++.+
T Consensus       113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~--~--------~~~~~~  182 (423)
T PRK00045        113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELAKQ--I--------FGDLSG  182 (423)
T ss_pred             CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCCCCcCHHHHHHHHHHH--h--------hCCccC
Confidence            3678999999999999999999998731   0  145677778886442     123332211  0        024678


Q ss_pred             CEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      ++++|+|+|++|+.++..|...|+ +|+|+||+.+++++++
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la  223 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELA  223 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHH
Confidence            999999999999999999999998 8999999999998775

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.20  E-value=1.7e-06  Score=88.68  Aligned_cols=96  Identities=13%  Similarity=0.184  Sum_probs=68.6

Q ss_pred             hHHHHhhhhhhcHHHHHhccceEEEEe---C--------CCCeEEEEcCcHHHHHH--HHHHHHHhcCcCCCCCCCCCCC
Q 015310          300 KEAVMKFCDEVHPLAQAIAAVNTIIRR---P--------SDGKLIGYNTDCEASIT--AIEDAIKERGYKNGTASFGSPL  366 (409)
Q Consensus       300 K~~i~~~~d~~~~~A~~igAvNti~~~---~--------~~g~l~G~NTD~~G~~~--~l~~~l~~~~~~~~~~~~~~~~  366 (409)
                      ..+|+.++.+.-..|+..|++..++.+   .        ...+-+|.+.=..+...  ..++.+             .++
T Consensus       113 E~QIlgQVK~A~~~A~~~g~~g~~L~~lf~~A~~~aKrVrteT~I~~~~vSv~~~Av~la~~~~-------------~~l  179 (414)
T PRK13940        113 EPQILGQVKDSYTLSKKNHAIGKELDRVFQKVFATAKRVRSETRIGHCPVSVAFSAITLAKRQL-------------DNI  179 (414)
T ss_pred             cHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHh-------------cCc
Confidence            457888888888888888888776533   0        01112333333334322  222221             347


Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      .+++++|+|+||+|++++.+|...|+ +|+|+||+.+||+.|+
T Consensus       180 ~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La  222 (414)
T PRK13940        180 SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKIT  222 (414)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            78999999999999999999999998 8999999999999886

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.03  E-value=8.2e-06  Score=82.95  Aligned_cols=139  Identities=17%  Similarity=0.188  Sum_probs=91.9

Q ss_pred             HhHHHHHHhcCCC------ceEeecCcccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEe--
Q 015310          255 ILHNPTFRHVNYN------GIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRR--  326 (409)
Q Consensus       255 ~ihn~~f~~~gl~------~~y~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~--  326 (409)
                      .+-+-.++..+++      +.|...+.+-+..++...  .|+..+.+.   -.+|+.++...-..|+.-|.+.+++.+  
T Consensus        64 ~~~~~l~~~~~~~~~~l~~~~~v~~~~~Av~HLfrVA--sGLDSmVlG---E~QILGQVK~Ay~~a~~~g~~g~~L~~lF  138 (414)
T COG0373          64 ELIRFLAELHGLSIEDLGKYLYVLRGEEAVRHLFRVA--SGLDSLVLG---ETQILGQVKDAYAKAQENGTLGKVLNRLF  138 (414)
T ss_pred             chhHHHHHhcCCChhhhccCeEEEcCHHHHHHHHHHh--ccchhhhcC---cHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            4334444455543      234444434455554432  344444444   367888998888888888888876532  


Q ss_pred             -C--------CCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEE
Q 015310          327 -P--------SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVI  396 (409)
Q Consensus       327 -~--------~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v  396 (409)
                       .        .+-+-+|.|--.++.... +.....          ..+++++++||||||-++.-++..|...|+ +|+|
T Consensus       139 qkAi~~gKrvRseT~I~~~~VSi~saAv-~lA~~~----------~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I  207 (414)
T COG0373         139 QKAISVGKRVRSETGIGKGAVSISSAAV-ELAKRI----------FGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITI  207 (414)
T ss_pred             HHHHHHHHHhhcccCCCCCccchHHHHH-HHHHHH----------hcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEE
Confidence             0        012346677666666432 211110          134789999999999999999999999998 9999


Q ss_pred             EeCChHHHHhhhC
Q 015310          397 FDIDFEQSLLLLM  409 (409)
Q Consensus       397 ~nR~~~ka~~la~  409 (409)
                      +|||.+||++||.
T Consensus       208 aNRT~erA~~La~  220 (414)
T COG0373         208 ANRTLERAEELAK  220 (414)
T ss_pred             EcCCHHHHHHHHH
Confidence            9999999999873

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.88  E-value=2.5e-05  Score=73.79  Aligned_cols=52  Identities=27%  Similarity=0.355  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC---eEEEEeCC----hHHH
Q 015310          340 EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID----FEQS  404 (409)
Q Consensus       340 ~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~---~i~v~nR~----~~ka  404 (409)
                      .||+.+++..             +.++++++++|+||||+|+++++.|.+.|+   +|+|+||+    .+++
T Consensus        10 AG~~~al~~~-------------g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~   68 (226)
T cd05311          10 AGLLNALKLV-------------GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGRE   68 (226)
T ss_pred             HHHHHHHHHh-------------CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccc
Confidence            5777777542             246788999999999999999999999997   59999999    5654

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.71  E-value=0.00013  Score=67.03  Aligned_cols=66  Identities=32%  Similarity=0.430  Sum_probs=52.3

Q ss_pred             EEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          334 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       334 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      |-||-....+..+++.+.+.         +.++++++++|+|+ |++|++++..|.+.|++|++++|+.+++++++
T Consensus         3 G~~~ta~aav~~~~~~l~~~---------~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~   69 (194)
T cd01078           3 GSNTTAAAAVAAAGKALELM---------GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAA   69 (194)
T ss_pred             CcHHHHHHHHHHHHHHHHHh---------CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            34555666667766666422         24678899999996 99999999999999999999999999988764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.35  E-value=0.00095  Score=53.14  Aligned_cols=52  Identities=27%  Similarity=0.431  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI  399 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR  399 (409)
                      +.|.+..|+......         +.++++++++|+|+|++|++++..|.+.|. +|+++||
T Consensus         3 ~~~~~~~l~~~~~~~---------~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191           3 AAGAVALLKAAGKVT---------NKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             hHHHHHHHHHHHHHh---------CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            567777777654311         245788999999999999999999999965 9999998

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.29  E-value=0.0011  Score=61.42  Aligned_cols=63  Identities=21%  Similarity=0.221  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ++|...+++..+...-       .+.+++|++++|+|.|.+|++++..|.+.|++|++++++.++.++++
T Consensus         6 g~Gv~~~~~~~~~~~~-------~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~   68 (200)
T cd01075           6 AYGVFLGMKAAAEHLL-------GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAA   68 (200)
T ss_pred             HHHHHHHHHHHHHHhc-------CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            4677777776654210       02568899999999999999999999999999999999998877653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.27  E-value=0.0019  Score=63.33  Aligned_cols=43  Identities=21%  Similarity=0.195  Sum_probs=39.0

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ..++|++++|+|+|++|++++..|..+|++|+++||+.++...
T Consensus       147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~  189 (287)
T TIGR02853       147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLAR  189 (287)
T ss_pred             CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            4678999999999999999999999999999999999877543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.26  E-value=0.0023  Score=62.50  Aligned_cols=122  Identities=16%  Similarity=0.194  Sum_probs=78.7

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|++.....++.    +++...++.+ .++++.|+-|-.|.-..    +|+   . +.+.+++--.=-  ||  
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~----i~~---~-~i~~~I~p~KDV--DGl~  123 (286)
T PRK14175         54 KKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQ----VSE---Q-KILEAINPEKDV--DGFH  123 (286)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH---H-HHHhccCcccCc--ccCC
Confidence            446789999988777764    3566667767 46789999999997422    221   1 122222221100  11  


Q ss_pred             -----eEE-EE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeC
Q 015310          331 -----KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       331 -----~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR  399 (409)
                           ++. |.    -.--.|++..|+..             +.+++||+++|+|.|+ +|+.++..|...|+.|+++++
T Consensus       124 ~~n~g~l~~~~~~~~PcTp~ai~~ll~~~-------------~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s  190 (286)
T PRK14175        124 PINIGKLYIDEQTFVPCTPLGIMEILKHA-------------DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHS  190 (286)
T ss_pred             ccchHhHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeC
Confidence                 111 11    01124556655432             2578999999999999 999999999999999999887


Q ss_pred             ChH
Q 015310          400 DFE  402 (409)
Q Consensus       400 ~~~  402 (409)
                      ...
T Consensus       191 ~t~  193 (286)
T PRK14175        191 RSK  193 (286)
T ss_pred             Cch
Confidence            533

>PLN00203 glutamyl-tRNA reductase

Probab=97.18  E-value=0.00063  Score=71.80  Aligned_cols=98  Identities=16%  Similarity=0.176  Sum_probs=67.9

Q ss_pred             hHHHHhhhhhhcHHHHHhccceEEEEe---C--C------CCeEEEEcCcHHHHHH--HHHHHHHhcCcCCCCCCCCCCC
Q 015310          300 KEAVMKFCDEVHPLAQAIAAVNTIIRR---P--S------DGKLIGYNTDCEASIT--AIEDAIKERGYKNGTASFGSPL  366 (409)
Q Consensus       300 K~~i~~~~d~~~~~A~~igAvNti~~~---~--~------~g~l~G~NTD~~G~~~--~l~~~l~~~~~~~~~~~~~~~~  366 (409)
                      -.+|+.++.+.-..|+..|+++.++.+   .  .      .-+-+|.+-=..+...  ..++.+.           ..++
T Consensus       196 E~QIlgQVK~A~~~A~~~g~~g~~L~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~-----------~~~l  264 (519)
T PLN00203        196 EGQILAQVKQVVKVGQGVDGFGRNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLP-----------ESSH  264 (519)
T ss_pred             ChHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcC-----------CCCC
Confidence            357888888888888888888766532   0  0      1112333333333322  1122111           0237


Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      .+++++|+|+|++|++++..|...|+ +|+|+||+.++++.++
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La  307 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALR  307 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH
Confidence            78999999999999999999999998 8999999999998875

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.15  E-value=0.0012  Score=59.45  Aligned_cols=43  Identities=26%  Similarity=0.272  Sum_probs=37.5

Q ss_pred             CCCCCCEEEEEechhH-HHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          364 SPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGa-arai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .+++|++++|+|+|++ ++.++..|.+.|++|+++||+.+...+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~   83 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKE   83 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHH
Confidence            4688999999999996 888999999999999999999765543

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.15  E-value=0.00051  Score=68.45  Aligned_cols=92  Identities=9%  Similarity=0.055  Sum_probs=63.1

Q ss_pred             hHHHHhhhhhhcHHHHHhccceEEEEe---C--------CCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCC
Q 015310          300 KEAVMKFCDEVHPLAQAIAAVNTIIRR---P--------SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAG  368 (409)
Q Consensus       300 K~~i~~~~d~~~~~A~~igAvNti~~~---~--------~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~  368 (409)
                      -.+|+.++.+.-..|+..|++..++.+   .        ....-+|.+-=..+.. +.+. ...          ..++.+
T Consensus       107 E~QIlGQVK~Ay~~A~~~g~~g~~L~~lf~~A~~~aKrVRteT~I~~~~vSv~s~-av~~-~~~----------~~~l~~  174 (338)
T PRK00676        107 ETEIQGQVKRAYLKAARERKLPFALHFLFQKALKEGKVFRSKGGAPYAEVTIESV-VQQE-LRR----------RQKSKK  174 (338)
T ss_pred             cHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHH-HHHH-HHH----------hCCccC
Confidence            457888888888888888877664422   0        0112344444444443 2221 110          135789


Q ss_pred             CEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHH
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQ  403 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~k  403 (409)
                      +++||+|+|-+|+.++..|.+.|+ +|+|+|||.++
T Consensus       175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~  210 (338)
T PRK00676        175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT  210 (338)
T ss_pred             CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc
Confidence            999999999999999999999998 89999999643

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.14  E-value=0.0038  Score=61.33  Aligned_cols=126  Identities=17%  Similarity=0.228  Sum_probs=81.3

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|++..-..++.    +++.+.++.+ .++.+.|+-|-+|.-.    ++|+   . +.+.+++--.=-  ||  
T Consensus        55 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~----~i~~---~-~i~~~I~p~KDV--DGl~  124 (301)
T PRK14194         55 ILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPA----HIDE---A-RVLQAINPLKDV--DGFH  124 (301)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCC----CCCH---H-HHHhccCchhcc--CccC
Confidence            446889999987777753    3577777777 5678999999999742    2222   1 122222221100  11  


Q ss_pred             -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEech-hHHHHHHHHHHhCCCeEEEEeC
Q 015310          331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~nR  399 (409)
                           ++ .|.+    .--.|++.-|+..             +.+++||+++|||.| =+|+.++.-|.+.|+.|++++|
T Consensus       125 ~~N~g~l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~  191 (301)
T PRK14194        125 SENVGGLSQGRDVLTPCTPSGCLRLLEDT-------------CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHS  191 (301)
T ss_pred             hhhhhHHhcCCCCCCCCcHHHHHHHHHHh-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECC
Confidence                 11 1111    1135666665542             367899999999997 5999999999999999999987


Q ss_pred             ChHHHHh
Q 015310          400 DFEQSLL  406 (409)
Q Consensus       400 ~~~ka~~  406 (409)
                      +....++
T Consensus       192 ~t~~l~e  198 (301)
T PRK14194        192 RSTDAKA  198 (301)
T ss_pred             CCCCHHH
Confidence            6443333

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.94  E-value=0.0015  Score=64.78  Aligned_cols=99  Identities=20%  Similarity=0.213  Sum_probs=65.8

Q ss_pred             chHHHHhhhhhhcHHHHHhccceEEEEe--------C---CCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCC
Q 015310          299 YKEAVMKFCDEVHPLAQAIAAVNTIIRR--------P---SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLA  367 (409)
Q Consensus       299 ~K~~i~~~~d~~~~~A~~igAvNti~~~--------~---~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~  367 (409)
                      =..+|+.++.+.-..|+..|.++.++.+        +   ....-++.+.=..+.. +++.....          ...+.
T Consensus       109 GE~qIlgQvk~A~~~a~~~g~~~~~L~~lf~~a~~~~k~vr~et~i~~~~~sv~~~-Av~~a~~~----------~~~l~  177 (311)
T cd05213         109 GETQILGQVKNAYKLAKEAGTSGKLLNRLFQKAIKVGKRVRTETGISRGAVSISSA-AVELAEKI----------FGNLK  177 (311)
T ss_pred             CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhhhcCCCCCCcCHHHH-HHHHHHHH----------hCCcc
Confidence            3567888888888888888887765532        0   0011122222223332 23321110          02357


Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      +++++|+|+|.+|+.++..|...|+ +|+|+||+.+++++++
T Consensus       178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la  219 (311)
T cd05213         178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELA  219 (311)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            8999999999999999999999887 8999999999998775

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.85  E-value=0.0019  Score=66.61  Aligned_cols=44  Identities=27%  Similarity=0.428  Sum_probs=40.3

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      .+.+++++|+|+|.+|+.++..|...|+ +|+|+||+.+++++++
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la  221 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLA  221 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            4678999999999999999999999997 9999999999988765

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=96.83  E-value=0.029  Score=51.51  Aligned_cols=130  Identities=18%  Similarity=0.155  Sum_probs=84.0

Q ss_pred             eeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        11 ~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      |.||+.|-..+.++..+-++.+... +|++|+-..++.... .+.++.+++. .+.|++...-.... +       .  .
T Consensus         1 ~~~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig~~~~~~~g-~~~i~~i~~~~~~~~i~~~~~v~~~-~-------~--~   68 (202)
T cd04726           1 PLLQVALDLLDLEEALELAKKVPDG-VDIIEAGTPLIKSEG-MEAVRALREAFPDKIIVADLKTADA-G-------A--L   68 (202)
T ss_pred             CceEEEEcCCCHHHHHHHHHHhhhc-CCEEEcCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEEeccc-c-------H--H
Confidence            5799999999999999988887665 999999766654332 2467777764 58899886553311 1       1  2


Q ss_pred             HHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           90 ALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        90 ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      .++.+.+.|+++|=+-.....+...+++ ..++.+.++++..+.. .||  ++..   + +...|+|++++
T Consensus        69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~-~t~--~e~~---~-~~~~~~d~v~~  132 (202)
T cd04726          69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGV-EDP--EKRA---K-LLKLGVDIVIL  132 (202)
T ss_pred             HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCC-CCH--HHHH---H-HHHCCCCEEEE
Confidence            3467788999988775544332233343 3445678888754432 133  2332   2 55668899888

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.71  E-value=0.0033  Score=61.86  Aligned_cols=41  Identities=24%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      ..+.+++++|+|+|++|++++..|..+|++|++++|+.++.
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~  188 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL  188 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            35678999999999999999999999999999999997654

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.61  E-value=0.092  Score=48.93  Aligned_cols=120  Identities=15%  Similarity=0.158  Sum_probs=77.5

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      +++.-+...+.+++...++.+.+.|+.++|+|.+--   +..+.++.+.+..+.++++-.=|     .   -..++   .
T Consensus        11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~---~~~~~i~~l~~~~~~~~~iGaGT-----V---~~~~~---~   76 (206)
T PRK09140         11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSP---DPFDSIAALVKALGDRALIGAGT-----V---LSPEQ---V   76 (206)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCc---cHHHHHHHHHHHcCCCcEEeEEe-----c---CCHHH---H
Confidence            455668889999999999999999999999997533   22346777766555555533211     1   11222   3


Q ss_pred             HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      +.+++.|++++=.=-... +..+   ..+..+..++.+.|+    |  +|    +.++.+.|+|++|+
T Consensus        77 ~~a~~aGA~fivsp~~~~-~v~~---~~~~~~~~~~~G~~t----~--~E----~~~A~~~Gad~vk~  130 (206)
T PRK09140         77 DRLADAGGRLIVTPNTDP-EVIR---RAVALGMVVMPGVAT----P--TE----AFAALRAGAQALKL  130 (206)
T ss_pred             HHHHHcCCCEEECCCCCH-HHHH---HHHHCCCcEEcccCC----H--HH----HHHHHHcCCCEEEE
Confidence            567888998875422211 1211   233567788888774    3  33    35566789999996

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=96.58  E-value=0.3  Score=47.54  Aligned_cols=208  Identities=14%  Similarity=0.069  Sum_probs=125.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCC-------CCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCI-------NNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l-------~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      +.++.++-++...+.|.|.+|.=.-.-       ...++.+.+..+++. .+.++..-.|..+.=|..+.+.+-..+.++
T Consensus        19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~   98 (275)
T cd07937          19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE   98 (275)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence            345555556666678999999875321       122334555555543 367888888876554544445555667888


Q ss_pred             HHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015310           93 LAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DIT  167 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~~  167 (409)
                      .+.+.|+++|-|-....+ +...+.+ .++..+.++..+... +....+.+.+.+.++++.+.|+|.+-++=+.-  ++.
T Consensus        99 ~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~  178 (275)
T cd07937          99 KAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPY  178 (275)
T ss_pred             HHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHH
Confidence            899999999888654432 2222222 455667777765432 22233467899999999999999998885544  477


Q ss_pred             HHHHHHHHhccC-CCCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          168 EIARIFQLLSHC-QVPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       168 D~~~ll~~~~~~-~~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      ++.++++.+.+. +.|+-.     ++|+.   ..=+..-..|..+.-+++.. +--.|+.+++++...++.
T Consensus       179 ~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~---aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~  246 (275)
T cd07937         179 AAYELVKALKKEVGLPIHLHTHDTSGLAV---ATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRG  246 (275)
T ss_pred             HHHHHHHHHHHhCCCeEEEEecCCCChHH---HHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHc
Confidence            888888776543 434321     12222   22222222344443344332 234799999988876653

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.54  E-value=0.0041  Score=61.70  Aligned_cols=42  Identities=21%  Similarity=0.291  Sum_probs=37.2

Q ss_pred             CCCEEEEEechhHHHHHHHHHHh-CCC-eEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~-~G~-~i~v~nR~~~ka~~la  408 (409)
                      ..++++|+|+|++|++.+.++.. .+. +|+|+||+++++++++
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a  167 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA  167 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            46899999999999999988776 566 8999999999999875

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=96.47  E-value=0.06  Score=50.86  Aligned_cols=152  Identities=18%  Similarity=0.243  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc--CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK--KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        22 ~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .+++.+-++.+.+.|+|.+=+..-+         +....+.  .+.|++..++...-=|....+.+....-.+.+++.|+
T Consensus        20 ~~d~~~~~~~~~~~g~~av~v~~~~---------~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga   90 (235)
T cd00958          20 LEDPEETVKLAAEGGADAVALTKGI---------ARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGA   90 (235)
T ss_pred             ccCHHHHHHHHHhcCCCEEEeChHH---------HHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCC
Confidence            3444445556666789998544221         2221111  2557787776321111112233555556789999999


Q ss_pred             cEEEEeccCccc-------hHHHHH-hccCCCcEEEEeccCCCC----CCCHhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015310          100 DYVDFELKVASN-------ILGKQY-SSHQSGTRFIVSCNLDCE----TPSEEDLGYLVSRMQATGADIIKLVFSVNDIT  167 (409)
Q Consensus       100 dyvDiEl~~~~~-------~~~~l~-~~~~~~~kiI~S~H~f~~----tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~  167 (409)
                      +.||+.++....       .+.++. ..++.+.++|+--|....    .-+.+++....+.+.+.|||++|+-. +.   
T Consensus        91 ~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~-~~---  166 (235)
T cd00958          91 DAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY-TG---  166 (235)
T ss_pred             CEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC-CC---
Confidence            999998876431       233444 235678999985543100    01234555557778899999999942 22   


Q ss_pred             HHHHHHHHhccCCCCEEEE
Q 015310          168 EIARIFQLLSHCQVPIIAY  186 (409)
Q Consensus       168 D~~~ll~~~~~~~~p~i~~  186 (409)
                      |...+-++......|+++.
T Consensus       167 ~~~~~~~i~~~~~~pvv~~  185 (235)
T cd00958         167 DAESFKEVVEGCPVPVVIA  185 (235)
T ss_pred             CHHHHHHHHhcCCCCEEEe
Confidence            3333444444456776443

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.45  E-value=0.012  Score=52.68  Aligned_cols=43  Identities=35%  Similarity=0.496  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ..+.||+++|+|-|-.||.+|..|..+|++|+|+.+++-++-+
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alq   61 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQ   61 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHH
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHH
Confidence            5678999999999999999999999999999999999988765

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.41  E-value=0.011  Score=58.40  Aligned_cols=42  Identities=17%  Similarity=0.066  Sum_probs=37.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHh-CCC-eEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~-~G~-~i~v~nR~~~ka~~la  408 (409)
                      ..++++|+|+|+.|++.+.++.. .+. +|+|+||+.+++++++
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a  167 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFC  167 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence            46799999999999999999976 577 8999999999999875

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.35  E-value=0.0064  Score=61.72  Aligned_cols=42  Identities=29%  Similarity=0.343  Sum_probs=37.9

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +.+++++|+|+|++|+.++..|..+|++|++++|+.++++.+
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l  206 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQL  206 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence            456789999999999999999999999999999999887765

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.30  E-value=0.03  Score=55.04  Aligned_cols=118  Identities=16%  Similarity=0.188  Sum_probs=77.6

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL  332 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l  332 (409)
                      ....+++|++..-..++.    +++...++.+ .++++.|+-|-.|+-.    ++|+   . +.+.+++--.    |  .
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~----~~~~---~-~i~~~I~p~K----D--V  119 (296)
T PRK14188         54 GKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPK----HLDS---E-AVIQAIDPEK----D--V  119 (296)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC----CCCH---H-HHHhccCccc----c--c
Confidence            346789999976555542    3677777777 4678999999999742    2222   1 1122222111    1  1


Q ss_pred             EEEcCc----------------HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEe-chhHHHHHHHHHHhCCCeEE
Q 015310          333 IGYNTD----------------CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAG-AGGAGRALAFGAKSRGARVV  395 (409)
Q Consensus       333 ~G~NTD----------------~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlG-aGGaarai~~aL~~~G~~i~  395 (409)
                      -|.+..                -.|++.-|+..             +.+++||+++|+| +|-+|+.++.-|.+.|+.|+
T Consensus       120 DGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~-------------~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt  186 (296)
T PRK14188        120 DGLHVVNAGRLATGETALVPCTPLGCMMLLRRV-------------HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT  186 (296)
T ss_pred             ccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE
Confidence            112211                35566655432             2578999999999 78899999999999999999


Q ss_pred             EE-eCChH
Q 015310          396 IF-DIDFE  402 (409)
Q Consensus       396 v~-nR~~~  402 (409)
                      ++ +||.+
T Consensus       187 v~~~rT~~  194 (296)
T PRK14188        187 IAHSRTRD  194 (296)
T ss_pred             EECCCCCC
Confidence            99 58854

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=96.26  E-value=0.52  Score=50.72  Aligned_cols=208  Identities=13%  Similarity=0.094  Sum_probs=135.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      +.++.+.-++...+.|.+.+|.-    .|.   +-..++.+.+..+++. .+.++..-+|..+-=|....+++-..+.++
T Consensus        19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~   98 (582)
T TIGR01108        19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK   98 (582)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence            45666666666677899999995    552   2222445667777653 468888888977777776667777777889


Q ss_pred             HHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEEEEec-cCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015310           93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSC-NLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--D  165 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~-H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~--~  165 (409)
                      .+++.|+|.+-|=....+  +....+..+++.+..+.++. +.|  +|  +.+.+.+..+++.+.|||.+-|+=|.-  +
T Consensus        99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~--~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~  176 (582)
T TIGR01108        99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTT--SPVHTLETYLDLAEELLEMGVDSICIKDMAGILT  176 (582)
T ss_pred             HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEecc--CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcC
Confidence            999999998877655432  22222223455666666542 223  55  567899999999999999988876654  5


Q ss_pred             HhHHHHHHHHhccC-CCCEEEE---EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          166 ITEIARIFQLLSHC-QVPIIAY---SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       166 ~~D~~~ll~~~~~~-~~p~i~~---~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      +.++.++.+.+.+. +.|+ .+   +..-++..+=+..-.-|....-+++.. +-..||++++++...++.
T Consensus       177 P~~v~~lv~~lk~~~~~pi-~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~le~vv~~L~~  246 (582)
T TIGR01108       177 PKAAYELVSALKKRFGLPV-HLHSHATTGMAEMALLKAIEAGADGIDTAISSMSGGTSHPPTETMVAALRG  246 (582)
T ss_pred             HHHHHHHHHHHHHhCCCce-EEEecCCCCcHHHHHHHHHHhCCCEEEeccccccccccChhHHHHHHHHHh
Confidence            78888887776533 4453 22   333344445554444555444444433 346899999988877753

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.25  E-value=0.041  Score=53.71  Aligned_cols=120  Identities=21%  Similarity=0.285  Sum_probs=77.3

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ...++++|++.....++.    +++.+.++.+ .++++.|+-|-.|.-.    ++|+   . +.+.+++--. + =||  
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~----~i~~---~-~i~~~I~p~K-D-VDGl~  123 (285)
T PRK14189         54 VKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPK----HIDS---H-KVIEAIAPEK-D-VDGFH  123 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCC----CCCH---H-HHHhhcCccc-C-cccCC
Confidence            456899999988777763    4677777777 4578999999999742    2221   1 1111222111 0 011  


Q ss_pred             -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhH-HHHHHHHHHhCCCeEEEEeC
Q 015310          331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGa-arai~~aL~~~G~~i~v~nR  399 (409)
                           ++ .|.+    .--.|++.-|+..             +.+++||+++|+|.|+. ||.++.-|.+.|+.|+++..
T Consensus       124 ~~n~g~l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs  190 (285)
T PRK14189        124 VANAGALMTGQPLFRPCTPYGVMKMLESI-------------GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHS  190 (285)
T ss_pred             hhhhhHhhCCCCCCcCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecC
Confidence                 11 1111    1125666665542             36789999999999997 99999999999999988865


Q ss_pred             C
Q 015310          400 D  400 (409)
Q Consensus       400 ~  400 (409)
                      .
T Consensus       191 ~  191 (285)
T PRK14189        191 K  191 (285)
T ss_pred             C
Confidence            3

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=96.16  E-value=0.077  Score=48.95  Aligned_cols=130  Identities=17%  Similarity=0.077  Sum_probs=87.0

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (409)
                      ++||.|-..+.++.++-++.+ ..|.|++|+-.-++.... .+.++.+++.. +.++++....- +       ...+  .
T Consensus         1 ~l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d-------~~~~--~   68 (206)
T TIGR03128         1 KLQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-D-------AGEY--E   68 (206)
T ss_pred             CeEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-c-------chHH--H
Confidence            478999999999999988876 788999999644544332 24677777653 56777766543 1       1111  3


Q ss_pred             HHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           91 LHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        91 l~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      .+.+.+.|+|+|=+-...+.....+++ ..++.+.++++..++.. |     ..+.++.+.+.|+|++|+
T Consensus        69 ~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-t-----~~~~~~~~~~~g~d~v~~  132 (206)
T TIGR03128        69 AEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVK-D-----KVKRAKELKELGADYIGV  132 (206)
T ss_pred             HHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCC-C-----hHHHHHHHHHcCCCEEEE
Confidence            567788999998776665433333444 34567899998766531 2     334455566779999988

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.14  E-value=0.035  Score=54.21  Aligned_cols=119  Identities=18%  Similarity=0.269  Sum_probs=78.4

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL  332 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l  332 (409)
                      .+.++++|++.....++.    +++.+.++.+ .++++.|+-|-+|...    ++|+   . +.+.+++--.=-  || +
T Consensus        55 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~----~~~~---~-~i~~~I~p~KDV--DG-l  123 (285)
T PRK10792         55 RKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPA----HIDN---V-KVLERIHPDKDV--DG-F  123 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCccccc--Cc-c
Confidence            456889999988777753    3677777777 4678999999999752    2222   1 122222221100  11 1


Q ss_pred             EEEc-------------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310          333 IGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD  398 (409)
Q Consensus       333 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n  398 (409)
                      +-+|             .--.|++..|+..             +.+++||+++|+|-|. .|+.++.-|.+.|+.|+++.
T Consensus       124 ~~~n~g~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~h  190 (285)
T PRK10792        124 HPYNVGRLAQRIPLLRPCTPRGIMTLLERY-------------GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCH  190 (285)
T ss_pred             ChhhHhHHhCCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEE
Confidence            1111             1125666665542             3678999999999999 99999999999999999988


Q ss_pred             CC
Q 015310          399 ID  400 (409)
Q Consensus       399 R~  400 (409)
                      +.
T Consensus       191 s~  192 (285)
T PRK10792        191 RF  192 (285)
T ss_pred             CC
Confidence            74

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.14  E-value=0.012  Score=47.20  Aligned_cols=39  Identities=33%  Similarity=0.398  Sum_probs=34.9

Q ss_pred             EEEEEechhHHHHHHHHHHhCC---CeEEEE-eCChHHHHhhh
Q 015310          370 MFVLAGAGGAGRALAFGAKSRG---ARVVIF-DIDFEQSLLLL  408 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~G---~~i~v~-nR~~~ka~~la  408 (409)
                      ++.|||+|.+|.+++..|.+.|   .+|+++ +|+++++++++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~   43 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELA   43 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHH
Confidence            4788999999999999999999   589855 99999998875

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.11  E-value=0.035  Score=54.18  Aligned_cols=118  Identities=20%  Similarity=0.343  Sum_probs=77.7

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL  332 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l  332 (409)
                      ...++++|++.....++.    +++...++.+ .++++.|+-|-+|....+    |+   . +.+.+++--. + =|| +
T Consensus        60 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i----~~---~-~i~~~I~p~K-D-VDG-l  128 (287)
T PRK14176         60 HKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHL----DP---Q-EAMEAIDPAK-D-ADG-F  128 (287)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCC----CH---H-HHHhccCccc-c-ccc-c
Confidence            456899999988777764    3577777777 567899999999975322    21   1 1111111110 0 011 2


Q ss_pred             EEEc-------------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310          333 IGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD  398 (409)
Q Consensus       333 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n  398 (409)
                      +-+|             .--.|++..|+..             +.+++||+++|+|.|. .|+.++.-|.+.|+.|+++.
T Consensus       129 ~~~N~g~l~~g~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~h  195 (287)
T PRK14176        129 HPYNMGKLMIGDEGLVPCTPHGVIRALEEY-------------GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCH  195 (287)
T ss_pred             ChhhhhhHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEe
Confidence            1111             1125666665542             3678999999999999 99999999999999999988


Q ss_pred             C
Q 015310          399 I  399 (409)
Q Consensus       399 R  399 (409)
                      .
T Consensus       196 s  196 (287)
T PRK14176        196 V  196 (287)
T ss_pred             c
Confidence            4

>PRK08328 hypothetical protein; Provisional

Probab=96.08  E-value=0.0068  Score=57.48  Aligned_cols=38  Identities=24%  Similarity=0.476  Sum_probs=33.5

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHH
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQ  403 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~k  403 (409)
                      +++++|+|+|+||.|..++..|+..|+ +++|++.+.-.
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve   63 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPE   63 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccC
Confidence            456789999999999999999999999 99999876433

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.08  E-value=0.0081  Score=55.72  Aligned_cols=35  Identities=34%  Similarity=0.509  Sum_probs=32.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++++|+|+|+||.|..++..|...|+ ++++++++
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            467899999999999999999999999 99999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.07  E-value=0.015  Score=60.02  Aligned_cols=43  Identities=33%  Similarity=0.502  Sum_probs=38.9

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ..+.|++++|+|.|..|+.++..|..+|++|+++++++.++..
T Consensus       208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~  250 (425)
T PRK05476        208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQ  250 (425)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHH
Confidence            3468999999999999999999999999999999999888654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.02  E-value=0.011  Score=59.02  Aligned_cols=42  Identities=21%  Similarity=0.409  Sum_probs=36.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHH-hCCC-eEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAK-SRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~-~~G~-~i~v~nR~~~ka~~la  408 (409)
                      ..++++|+|+|+.|++.+.++. ..++ +|+|+||+++++++++
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~  169 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFA  169 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence            3578999999999999998876 4578 8999999999998875

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.99  E-value=0.0073  Score=61.43  Aligned_cols=34  Identities=32%  Similarity=0.422  Sum_probs=32.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      ++++|+|+|+||.|..++..|+..|+ +|++++++
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46789999999999999999999999 99999998

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.98  E-value=0.0087  Score=49.32  Aligned_cols=37  Identities=22%  Similarity=0.322  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +++|+++||+|+|.+|..-+..|.+.|++|+|++.+.
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            5789999999999999999999999999999999985

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=95.93  E-value=0.21  Score=48.85  Aligned_cols=84  Identities=20%  Similarity=0.364  Sum_probs=59.8

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecC----------CCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCC
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDC----------INNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLY   80 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~----------l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~   80 (409)
                      .++++|.+.+.+++...++.+.+.|+|.||+=+-+          ..+.+. .+.++.+++..++|+.+-++..      
T Consensus        91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~------  164 (296)
T cd04740          91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN------  164 (296)
T ss_pred             cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC------
Confidence            36799999999999999999888899999996432          111110 1234444455589999888642      


Q ss_pred             CCCHHHHHHHHHHHHHcCCcEEEE
Q 015310           81 EGDEHKRLEALHLAEDLGADYVDF  104 (409)
Q Consensus        81 ~~~~~~~~~ll~~~~~~g~dyvDi  104 (409)
                         .++-.++.+.+.+.|+|+|++
T Consensus       165 ---~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         165 ---VTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             ---chhHHHHHHHHHHcCCCEEEE
Confidence               235667778888899999886

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=95.92  E-value=0.49  Score=45.25  Aligned_cols=146  Identities=16%  Similarity=0.140  Sum_probs=92.5

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCh-hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHH---HHHH
Q 015310           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE---ALHL   93 (409)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~---ll~~   93 (409)
                      ..+.+++.    .+.+.|||-|||.-++-. ...|. ..++.+++..++|+.+-+|++  ||-|-.++++...   -++.
T Consensus         8 v~s~~~a~----~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR--~gdF~Ys~~E~~~M~~di~~   81 (248)
T PRK11572          8 CYSMECAL----TAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERVTIPVHPIIRPR--GGDFCYSDGEFAAMLEDIAT   81 (248)
T ss_pred             ECCHHHHH----HHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHHHHH
Confidence            34555544    455789999999998754 33443 345566666799999999985  5666667655433   3456


Q ss_pred             HHHcCCcEEEE-----eccCccchHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015310           94 AEDLGADYVDF-----ELKVASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT  167 (409)
Q Consensus        94 ~~~~g~dyvDi-----El~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~  167 (409)
                      +.++|+|.|=+     +-..+.+..++|+... ++.++  .||- |+.+++.   .+-++.+.++|.|=+==.--+.+..
T Consensus        82 ~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a-~~~~v--TFHRAfD~~~d~---~~al~~l~~lG~~rILTSGg~~~a~  155 (248)
T PRK11572         82 VRELGFPGLVTGVLDVDGHVDMPRMRKIMAAA-GPLAV--TFHRAFDMCANP---LNALKQLADLGVARILTSGQQQDAE  155 (248)
T ss_pred             HHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh-cCCce--EEechhhccCCH---HHHHHHHHHcCCCEEECCCCCCCHH
Confidence            66788886655     3344445667777432 44444  6776 9999854   4567777778855443333444566


Q ss_pred             HHHHHHHHh
Q 015310          168 EIARIFQLL  176 (409)
Q Consensus       168 D~~~ll~~~  176 (409)
                      |.+..++-+
T Consensus       156 ~g~~~L~~l  164 (248)
T PRK11572        156 QGLSLIMEL  164 (248)
T ss_pred             HHHHHHHHH
Confidence            666555544

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.86  E-value=0.11  Score=50.88  Aligned_cols=119  Identities=18%  Similarity=0.253  Sum_probs=76.5

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|++.....++.    +++.+.++.+ .++.+.|+-|-+|...    ++|+   . +.+.+++--.=-  ||  
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~----~i~~---~-~i~~~I~p~KDV--DGl~  122 (285)
T PRK14191         53 IKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPR----HIDT---K-MVLEAIDPNKDV--DGFH  122 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhcCCccccc--cccC
Confidence            456889999988777764    3677777777 4678999999999752    2222   1 111222211100  11  


Q ss_pred             -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEech-hHHHHHHHHHHhCCCeEEEEeC
Q 015310          331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~nR  399 (409)
                           ++ .|.+    .--.|++.-|+..             +.+++||+|+|+|.| -+|+.++.-|.+.|+.|+++..
T Consensus       123 ~~n~g~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs  189 (285)
T PRK14191        123 PLNIGKLCSQLDGFVPATPMGVMRLLKHY-------------HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHI  189 (285)
T ss_pred             hhhHHHHhcCCCCCCCCcHHHHHHHHHHh-------------CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeC
Confidence                 11 1111    1224555555432             367899999999998 6999999999999999888764

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=95.83  E-value=0.34  Score=44.62  Aligned_cols=108  Identities=17%  Similarity=0.189  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHH---hcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +++..+++.+.+.|+|+|++|.--+......+.+..+.   +..+.|+++.                  +.++.+.+.|+
T Consensus        21 ~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~a~~~ga   82 (212)
T PRK00043         21 RDLLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGVPLIVN------------------DRVDLALAVGA   82 (212)
T ss_pred             ccHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------------ChHHHHHHcCC
Confidence            45667778888889999999975333211112222222   2346787763                  12456778899


Q ss_pred             cEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310          100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus       100 dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      ++|=+......  ...+...+..+.++-+|.|+      .+++    .+..+.|+|++++-
T Consensus        83 d~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~t------~~e~----~~a~~~gaD~v~~~  131 (212)
T PRK00043         83 DGVHLGQDDLP--VADARALLGPDAIIGLSTHT------LEEA----AAALAAGADYVGVG  131 (212)
T ss_pred             CEEecCcccCC--HHHHHHHcCCCCEEEEeCCC------HHHH----HHHhHcCCCEEEEC
Confidence            99877554322  12222233466778888873      2333    44446799999974

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=95.78  E-value=0.42  Score=43.73  Aligned_cols=118  Identities=20%  Similarity=0.231  Sum_probs=69.7

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      .++.-+...+.+++...++.+.+.|++++|+|..--   ...+.++.+.+..+. +.+..      |.. .+. ++   +
T Consensus         5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~---~~~~~i~~l~~~~~~-~~iGa------g~v-~~~-~~---~   69 (190)
T cd00452           5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTP---GALEAIRALRKEFPE-ALIGA------GTV-LTP-EQ---A   69 (190)
T ss_pred             cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCh---hHHHHHHHHHHHCCC-CEEEE------EeC-CCH-HH---H
Confidence            455668889999999999999999999999997622   223345555544331 22221      211 112 22   3


Q ss_pred             HHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           92 HLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      +.+++.|+++|=.    +.. ...+. ..+..+.++|.-..    ||  +|    ..++.+.|||++|+
T Consensus        70 ~~a~~~Ga~~i~~----p~~-~~~~~~~~~~~~~~~i~gv~----t~--~e----~~~A~~~Gad~i~~  123 (190)
T cd00452          70 DAAIAAGAQFIVS----PGL-DPEVVKAANRAGIPLLPGVA----TP--TE----IMQALELGADIVKL  123 (190)
T ss_pred             HHHHHcCCCEEEc----CCC-CHHHHHHHHHcCCcEECCcC----CH--HH----HHHHHHCCCCEEEE
Confidence            5667789998832    211 11222 22334667776543    32  33    34445789999998

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.024  Score=55.37  Aligned_cols=44  Identities=32%  Similarity=0.336  Sum_probs=39.0

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+++++++|.|+ ||.|++++..|.+.|++|++++|+.++++++
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~   80 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAV   80 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4567899999996 8899999999999999999999998887665

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.65  E-value=0.026  Score=58.06  Aligned_cols=43  Identities=33%  Similarity=0.522  Sum_probs=38.8

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ..+.|++|+|+|+|..|+.++..+..+|++|+|+++++.|+..
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~  240 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQ  240 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHH
Confidence            4568999999999999999999999999999999999887654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.64  E-value=0.014  Score=54.10  Aligned_cols=35  Identities=26%  Similarity=0.560  Sum_probs=32.9

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      ++.++|+|+|+||.|..++..|+..|+ +|++++++
T Consensus        19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            567899999999999999999999999 89999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.63  E-value=0.068  Score=52.18  Aligned_cols=117  Identities=18%  Similarity=0.277  Sum_probs=76.1

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL  332 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l  332 (409)
                      ....+++|++.....++-    +++.+.++.+ .++.+.|+-|-.|.-..    +|+   . +.+.+++--. + =|| +
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~----i~~---~-~i~~~I~p~K-D-VDG-l  122 (284)
T PRK14179         54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKH----INE---E-KILLAIDPKK-D-VDG-F  122 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCC----CCH---H-HHHhccCccc-c-ccc-c
Confidence            357899999988777763    3566777777 46789999999997522    221   1 1111222111 0 011 2


Q ss_pred             EEEcC-------------cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEe
Q 015310          333 IGYNT-------------DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD  398 (409)
Q Consensus       333 ~G~NT-------------D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~n  398 (409)
                      +-+|.             --.|++.-|+..             +.+++||+++|+|. |=+|+.++.-|.+.|+.|+++.
T Consensus       123 ~~~N~g~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~  189 (284)
T PRK14179        123 HPMNTGHLWSGRPVMIPCTPAGIMEMFREY-------------NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH  189 (284)
T ss_pred             CHhhHHHHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence            21221             124555655432             36789999999998 6699999999999999999984

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=95.60  E-value=1.3  Score=42.28  Aligned_cols=199  Identities=18%  Similarity=0.129  Sum_probs=120.8

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCC----C-CCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCIN----N-FQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLA   94 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~----~-~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~   94 (409)
                      +.++.++-++.+.+.|+|.||+=.=--.    - .++.+.++.+++.. +.++..-.|..             .+.++.+
T Consensus        17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-------------~~~i~~a   83 (265)
T cd03174          17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR-------------EKGIERA   83 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc-------------hhhHHHH
Confidence            5677777777777889999998542211    0 12234455555444 46665555542             3456777


Q ss_pred             HHcCCcEEEEeccCcc----------------chHHHHHhccCCCcEEEEec-cCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015310           95 EDLGADYVDFELKVAS----------------NILGKQYSSHQSGTRFIVSC-NLDCETPSEEDLGYLVSRMQATGADII  157 (409)
Q Consensus        95 ~~~g~dyvDiEl~~~~----------------~~~~~l~~~~~~~~kiI~S~-H~f~~tp~~~~l~~~~~~~~~~gaDiv  157 (409)
                      .+.|++.|-+=+...+                ...+.+..+++.+.++.++. .-|...-+.+++.++++++.++|+|.+
T Consensus        84 ~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i  163 (265)
T cd03174          84 LEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEI  163 (265)
T ss_pred             HhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEE
Confidence            8889898888766551                12222224567788888888 444411235789999999999999999


Q ss_pred             EEEeec--CCHhHHHHHHHHhccC-C-CCEEEEEcC--ccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310          158 KLVFSV--NDITEIARIFQLLSHC-Q-VPIIAYSVG--ERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (409)
Q Consensus       158 Kia~~~--~~~~D~~~ll~~~~~~-~-~p~i~~~MG--~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~  230 (409)
                      -++=+.  -+++++.++++.+.+. + .|+-.=+=-  .+|...=+..-..|..+.=+++.. +-..|+.+.+++...++
T Consensus       164 ~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~  243 (265)
T cd03174         164 SLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALE  243 (265)
T ss_pred             EechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHH
Confidence            887443  3688888888876543 2 333211111  122233333333444444444433 35689999999887775


Q ss_pred             hc
Q 015310          231 VE  232 (409)
Q Consensus       231 ~~  232 (409)
                      ..
T Consensus       244 ~~  245 (265)
T cd03174         244 GL  245 (265)
T ss_pred             hc
Confidence            43

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=95.59  E-value=1.8  Score=45.14  Aligned_cols=209  Identities=15%  Similarity=0.139  Sum_probs=133.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      +.++.+.-++...+.|.+.+|.-    .|.   +-..++.+.+..+++. .+.++..-.|..+-=|..+.+++-..+.++
T Consensus        24 ~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~  103 (448)
T PRK12331         24 TTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQ  103 (448)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHH
Confidence            44566666666667799999994    552   2222445667777654 366776668877777777777777788899


Q ss_pred             HHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEE--EeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--
Q 015310           93 LAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFI--VSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--  164 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI--~S~H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~--  164 (409)
                      .+++.|++.|-|=....+ ..+.+.+ .+++.|..+.  +||-+   .|  +.+.+.++.+++.+.|||.+-|+=|.-  
T Consensus       104 ~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~---~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l  180 (448)
T PRK12331        104 KSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTT---SPVHTIDYFVKLAKEMQEMGADSICIKDMAGIL  180 (448)
T ss_pred             HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeec---CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence            999999999888665533 1122233 3445555543  45443   23  457789999999999999988886665  


Q ss_pred             CHhHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhhc
Q 015310          165 DITEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKVE  232 (409)
Q Consensus       165 ~~~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~~  232 (409)
                      ++.++.++.+.+.+. +.|+-.=  +.--+|..+=+..-.-|....-+++.. +--.||++.+++...++..
T Consensus       181 ~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~gaGN~~tE~lv~~L~~~  252 (448)
T PRK12331        181 TPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVAALQDL  252 (448)
T ss_pred             CHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCcCCHhHHHHHHHHHhc
Confidence            578888888776543 5554321  122234444444444454444444432 1237999999998887643

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.53  E-value=0.095  Score=51.11  Aligned_cols=118  Identities=14%  Similarity=0.204  Sum_probs=77.3

Q ss_pred             HHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC---
Q 015310          259 PTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG---  330 (409)
Q Consensus       259 ~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g---  330 (409)
                      +.++++|++.....++.    +++.+.++.+ .++...|+-|-+|+...    +|+   . +.+.+++-..=-  ||   
T Consensus        54 k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~----i~~---~-~i~~~I~p~KDV--DGl~~  123 (282)
T PRK14180         54 KACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAH----INK---N-NVIYSIKPEKDV--DGFHP  123 (282)
T ss_pred             HHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH---H-HHHhhcCccccc--cccCh
Confidence            46889999988777764    3577777777 56789999999998522    221   1 122222222100  11   


Q ss_pred             ----eE-EEEc-----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeC
Q 015310          331 ----KL-IGYN-----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       331 ----~l-~G~N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR  399 (409)
                          ++ .|.+     .--.|++.-|+..             +.+++||+++|+|.+. +||.++.-|.+.|+.|+++.+
T Consensus       124 ~n~g~l~~g~~~~~~PcTp~aii~lL~~y-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs  190 (282)
T PRK14180        124 TNVGRLQLRDKKCLESCTPKGIMTMLREY-------------GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHR  190 (282)
T ss_pred             hhHHHHhcCCCCCcCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcC
Confidence                11 2211     1125666665542             3678999999999877 999999999999999999865

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=95.53  E-value=0.38  Score=45.33  Aligned_cols=138  Identities=18%  Similarity=0.205  Sum_probs=85.4

Q ss_pred             EEeecc--CCHHHHHHHHHHHHhcCCCEE--EEEecCCCCCCChhHHHHHH---hcCCCcEEEEeccCCCCCCCC--CCH
Q 015310           14 CAPLMA--QSVEQVLSNMYQAKAEGADVV--EIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYE--GDE   84 (409)
Q Consensus        14 cv~l~~--~~~~e~~~~~~~~~~~~aD~v--ElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~   84 (409)
                      |+++.+  .+.+....+++++...|+|.+  .+|.-.+......+.+.+++   +...+|+|+..+.  +|-...  .++
T Consensus        65 ~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~--~g~~~~~~~~~  142 (235)
T cd00958          65 STSLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYP--RGPAVKNEKDP  142 (235)
T ss_pred             CCCCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEec--cCCcccCccCH
Confidence            455553  566777778899999999988  77765433211122344443   3468999997654  233221  234


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015310           85 HKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (409)
Q Consensus        85 ~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDiv  157 (409)
                      ++-....+.+.+.|+|||=+-.....+.++++...  ....++++=..  +..+.++..+.++++.+.|++-+
T Consensus       143 ~~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~--~~~~~~~~l~~~~~~~~~Ga~gv  211 (235)
T cd00958         143 DLIAYAARIGAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGP--KKDSEEEFLKMVYDAMEAGAAGV  211 (235)
T ss_pred             HHHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCC--CCCCHHHHHHHHHHHHHcCCcEE
Confidence            44344466788999999999654444555666532  33456666321  23455778888899999999844

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK06196 oxidoreductase; Provisional

Probab=95.47  E-value=0.029  Score=55.22  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=38.8

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .++++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~   66 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREA   66 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3467899999997 8899999999999999999999998887654

>PRK14982 acyl-ACP reductase; Provisional

Probab=95.47  E-value=0.026  Score=56.59  Aligned_cols=45  Identities=20%  Similarity=0.236  Sum_probs=39.3

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHh-CCC-eEEEEeCChHHHHhhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKS-RGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~-~G~-~i~v~nR~~~ka~~la  408 (409)
                      .++++++++|+|| |.+|+.++..|.. .|+ +++++||+.+++..++
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La  198 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ  198 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence            4678999999999 6799999999975 577 9999999999988775

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.42  E-value=0.026  Score=56.01  Aligned_cols=42  Identities=19%  Similarity=0.352  Sum_probs=37.8

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .|+.++|.|| ||.|++++..|++.|++|.+++|+.++.++++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~   94 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVS   94 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            4789999996 88999999999999999999999999877653

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.40  E-value=0.11  Score=50.67  Aligned_cols=118  Identities=16%  Similarity=0.175  Sum_probs=76.8

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL  332 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l  332 (409)
                      ...++++|++.....++-    +++.+.++.+ .++++.|+-|-+|+..    ++|+    -+.+.+++--.=-  || +
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~----~~~~----~~i~~~I~p~KDV--DG-l  122 (278)
T PRK14172         54 EKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPK----HLDE----KKITNKIDANKDI--DC-L  122 (278)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCC----CCCH----HHHHhccCccccc--Cc-c
Confidence            357889999998887763    3566677777 4678999999999752    2222    1122222221100  11 1


Q ss_pred             EEEc-------------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310          333 IGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD  398 (409)
Q Consensus       333 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n  398 (409)
                      +-+|             .--.|++.-|+..             +.+++||+++|+|-+. +|+.++.-|.+.|+.|+++.
T Consensus       123 ~~~n~g~l~~g~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~ch  189 (278)
T PRK14172        123 TFISVGKFYKGEKCFLPCTPNSVITLIKSL-------------NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICH  189 (278)
T ss_pred             CHhhHHHHhCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence            1111             1124555555432             3678999999999777 99999999999999999987


Q ss_pred             C
Q 015310          399 I  399 (409)
Q Consensus       399 R  399 (409)
                      .
T Consensus       190 s  190 (278)
T PRK14172        190 S  190 (278)
T ss_pred             C
Confidence            4

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.38  E-value=0.037  Score=50.15  Aligned_cols=43  Identities=33%  Similarity=0.425  Sum_probs=37.0

Q ss_pred             CCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       363 ~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      +..+.|+++.|+|.|..|++++..|..+|++|+.++|+.....
T Consensus        31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~   73 (178)
T PF02826_consen   31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE   73 (178)
T ss_dssp             BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred             ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence            3568899999999999999999999999999999999977543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd00945 Aldolase_Class_I Class I aldolases

Probab=95.37  E-value=1.3  Score=39.89  Aligned_cols=141  Identities=16%  Similarity=0.204  Sum_probs=85.9

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc--C-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK--K-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~--~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (409)
                      +.+.+.+.++.+.+.|+|.+++--         +.++.+++.  . +.|+++.+-...  +.  ..-++-.+..+.+.+.
T Consensus        11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~~~~~~~v~~~v~~~~--~~--~~~~~~~~~a~~a~~~   77 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADALAGSDVPVIVVVGFPT--GL--TTTEVKVAEVEEAIDL   77 (201)
T ss_pred             CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHhCCCCCeEEEEecCCC--CC--CcHHHHHHHHHHHHHc
Confidence            677777778888888999998775         233334332  2 588887664321  11  2246777888999999


Q ss_pred             CCcEEEEeccCc-------c---chHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC---
Q 015310           98 GADYVDFELKVA-------S---NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN---  164 (409)
Q Consensus        98 g~dyvDiEl~~~-------~---~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~---  164 (409)
                      |+|.+.+-....       +   +.++++...-+.+..+++- +....+.+.+++.+..+.++..|+|.+|......   
T Consensus        78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy-~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~  156 (201)
T cd00945          78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVI-LETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGG  156 (201)
T ss_pred             CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEE-EECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCC
Confidence            999999864431       1   2233333221134554443 3333333456777777777788999999776422   


Q ss_pred             -CHhHHHHHHHH
Q 015310          165 -DITEIARIFQL  175 (409)
Q Consensus       165 -~~~D~~~ll~~  175 (409)
                       +.+.+..+.+.
T Consensus       157 ~~~~~~~~i~~~  168 (201)
T cd00945         157 ATVEDVKLMKEA  168 (201)
T ss_pred             CCHHHHHHHHHh
Confidence             45555444443

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.36  E-value=0.14  Score=49.92  Aligned_cols=119  Identities=19%  Similarity=0.272  Sum_probs=75.4

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|++..-..++.    +++.+.++.+ .+++..|+-|-.|...    ++|+   . +.+.+++--.=-  ||  
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~----~i~~---~-~i~~~I~p~KDV--DGl~  122 (281)
T PRK14183         53 AKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPK----HIDT---T-KILEAIDPKKDV--DGFH  122 (281)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCC----CCCH---H-HHHhccCchhcc--cccC
Confidence            456889999987666643    3577777777 5678999999999852    2221   0 111222211100  11  


Q ss_pred             -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEech-hHHHHHHHHHHhCCCeEEEEeC
Q 015310          331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~nR  399 (409)
                           ++ .|.+    .--.|++.-|+..             +.+++||+++|+|.| -+|+.++.-|.+.|+.|+++..
T Consensus       123 ~~n~g~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs  189 (281)
T PRK14183        123 PYNVGRLVTGLDGFVPCTPLGVMELLEEY-------------EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHI  189 (281)
T ss_pred             hhhhhHHhcCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence                 11 1111    1135666665542             368999999999988 4999999999999999998864

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.33  E-value=0.021  Score=53.42  Aligned_cols=35  Identities=31%  Similarity=0.513  Sum_probs=32.7

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++++|+|+|+||.|..++..|...|+ ++++++.+
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            567899999999999999999999999 89999987

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.31  E-value=0.033  Score=57.13  Aligned_cols=43  Identities=35%  Similarity=0.567  Sum_probs=38.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ..+.|++++|+|.|..|+.++..+..+|++|+++++++.++.+
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~  233 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALE  233 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHH
Confidence            3478999999999999999999999999999999999877643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=95.30  E-value=1.1  Score=41.90  Aligned_cols=118  Identities=18%  Similarity=0.260  Sum_probs=72.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCC-CCCCCCHHHHHHHHHHHHHcCC
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAG-GLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG-G~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +.+++.+-++.+...|+.++++.       + .+.++.+++..++|+|...|..-.+ -.+-..   ..+.++.+.+.|+
T Consensus        21 ~~~~~~~~a~a~~~~G~~~~~~~-------~-~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~---~~~~v~~a~~aGa   89 (221)
T PRK01130         21 SPEIMAAMALAAVQGGAVGIRAN-------G-VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITP---TLKEVDALAAAGA   89 (221)
T ss_pred             CHHHHHHHHHHHHHCCCeEEEcC-------C-HHHHHHHHHhCCCCEEEEEecCCCCCCceECC---CHHHHHHHHHcCC
Confidence            34455555666667789889862       1 3467777777799998776622111 122111   2234578888999


Q ss_pred             cEEEEeccC---cc-chHHHHH-hccC-CCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310          100 DYVDFELKV---AS-NILGKQY-SSHQ-SGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus       100 dyvDiEl~~---~~-~~~~~l~-~~~~-~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      |+|=+.+..   +. +...+++ ..++ .+..++...|+      .+++    .++.+.|+|++.+
T Consensus        90 d~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~t------~ee~----~~a~~~G~d~i~~  145 (221)
T PRK01130         90 DIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCST------LEEG----LAAQKLGFDFIGT  145 (221)
T ss_pred             CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCCC------HHHH----HHHHHcCCCEEEc
Confidence            988776653   11 2233444 3455 78888887763      3343    5678899999976

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.29  E-value=0.019  Score=54.85  Aligned_cols=37  Identities=24%  Similarity=0.391  Sum_probs=33.1

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChH
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFE  402 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~  402 (409)
                      +++++|+|+|+||.|..++..|...|+ ++++++.+.-
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v   59 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV   59 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence            456789999999999999999999999 9999988743

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.25  E-value=0.12  Score=50.42  Aligned_cols=120  Identities=18%  Similarity=0.257  Sum_probs=77.6

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL  332 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l  332 (409)
                      .+.++++|++.....++.    +++.+.++.+ .++++.|+-|-+|...    ++|+    -+.+.+++.-.=-  || +
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~----~id~----~~i~~~I~p~KDV--DG-l  122 (288)
T PRK14171         54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPS----SIDK----NKILSAVSPSKDI--DG-F  122 (288)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCC----CCCH----HHHHhccCccccc--cc-C
Confidence            456889999988777753    3566667666 4678999999999753    2221    1122222221100  11 2


Q ss_pred             EEEcC--------c------HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310          333 IGYNT--------D------CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF  397 (409)
Q Consensus       333 ~G~NT--------D------~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~  397 (409)
                      +-+|.        .      -.|++.-|+..             +.+++||+++|+|-+. +||.++.-|.+.|+.|+++
T Consensus       123 ~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y-------------~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtic  189 (288)
T PRK14171        123 HPLNVGYLHSGISQGFIPCTALGCLAVIKKY-------------EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTIC  189 (288)
T ss_pred             CccchhhhhcCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEe
Confidence            11111        1      25556655432             3678999999999877 9999999999999999988


Q ss_pred             e-CCh
Q 015310          398 D-IDF  401 (409)
Q Consensus       398 n-R~~  401 (409)
                      . ||.
T Consensus       190 hs~T~  194 (288)
T PRK14171        190 HSKTH  194 (288)
T ss_pred             CCCCC
Confidence            7 443

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=95.15  E-value=1.1  Score=41.41  Aligned_cols=143  Identities=14%  Similarity=0.102  Sum_probs=86.0

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC--CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 015310           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (409)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (409)
                      ..+.+++.+.++++.+.++|.+=+.--         .+...++..  ....+-|.-.-+.|.   .+.+....-.+.+++
T Consensus        13 ~~t~~~i~~~~~~a~~~~~~av~v~p~---------~v~~~~~~l~~~~~~v~~~~~fp~g~---~~~~~k~~eve~A~~   80 (203)
T cd00959          13 DATEEDIRKLCDEAKEYGFAAVCVNPC---------FVPLAREALKGSGVKVCTVIGFPLGA---TTTEVKVAEAREAIA   80 (203)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcHH---------HHHHHHHHcCCCCcEEEEEEecCCCC---CcHHHHHHHHHHHHH
Confidence            447888888888888778888865422         222222211  223344443333333   234555555789999


Q ss_pred             cCCcEEEEeccCc-------cchHHH---HHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--ee-
Q 015310           97 LGADYVDFELKVA-------SNILGK---QYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--FS-  162 (409)
Q Consensus        97 ~g~dyvDiEl~~~-------~~~~~~---l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia--~~-  162 (409)
                      .|+|-||+=++..       +...++   +.. .+....|+|+-.-..    +.+++....+-+.+.|||++|..  .. 
T Consensus        81 ~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l----~~~~i~~a~ria~e~GaD~IKTsTG~~~  156 (203)
T cd00959          81 DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL----TDEEIIKACEIAIEAGADFIKTSTGFGP  156 (203)
T ss_pred             cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC----CHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence            9999999966553       112233   332 232234555544332    34678888888999999999997  33 


Q ss_pred             -cCCHhHHHHHHHHhc
Q 015310          163 -VNDITEIARIFQLLS  177 (409)
Q Consensus       163 -~~~~~D~~~ll~~~~  177 (409)
                       +.+++|+..+.+...
T Consensus       157 ~~at~~~v~~~~~~~~  172 (203)
T cd00959         157 GGATVEDVKLMKEAVG  172 (203)
T ss_pred             CCCCHHHHHHHHHHhC
Confidence             346778776666654

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=95.14  E-value=0.67  Score=43.03  Aligned_cols=125  Identities=22%  Similarity=0.319  Sum_probs=71.1

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCh-hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH---HHH
Q 015310           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA---LHL   93 (409)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l---l~~   93 (409)
                      ..+.+++.    .+.+.|||-||+.-++-. ...|. ..++.+++..++|+-+-+|++  ||-|-.++++...+   ++.
T Consensus         7 v~s~~~a~----~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~~~~ipv~vMIRpr--~gdF~Ys~~E~~~M~~dI~~   80 (201)
T PF03932_consen    7 VESLEDAL----AAEAGGADRIELCSNLEVGGLTPSLGLIRQAREAVDIPVHVMIRPR--GGDFVYSDEEIEIMKEDIRM   80 (201)
T ss_dssp             ESSHHHHH----HHHHTT-SEEEEEBTGGGT-B---HHHHHHHHHHTTSEEEEE--SS--SS-S---HHHHHHHHHHHHH
T ss_pred             eCCHHHHH----HHHHcCCCEEEECCCccCCCcCcCHHHHHHHHhhcCCceEEEECCC--CCCccCCHHHHHHHHHHHHH
Confidence            34555544    456789999999998754 33342 355666677899999999965  56666777554444   456


Q ss_pred             HHHcCCcEEEEec-----cCccchHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCC
Q 015310           94 AEDLGADYVDFEL-----KVASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGAD  155 (409)
Q Consensus        94 ~~~~g~dyvDiEl-----~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaD  155 (409)
                      +.++|+|-+-+=.     ..+.+..++++.. .++..+..  |- |+.+++.+   +-++++.++|.|
T Consensus        81 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~-a~~~~~tF--HRAfD~~~d~~---~al~~L~~lG~~  142 (201)
T PF03932_consen   81 LRELGADGFVFGALTEDGEIDEEALEELIEA-AGGMPVTF--HRAFDEVPDPE---EALEQLIELGFD  142 (201)
T ss_dssp             HHHTT-SEEEE--BETTSSB-HHHHHHHHHH-HTTSEEEE---GGGGGSSTHH---HHHHHHHHHT-S
T ss_pred             HHHcCCCeeEEEeECCCCCcCHHHHHHHHHh-cCCCeEEE--eCcHHHhCCHH---HHHHHHHhcCCC
Confidence            6678888766532     2233566677743 24666655  54 99999754   445666666855

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.11  E-value=0.026  Score=56.58  Aligned_cols=36  Identities=28%  Similarity=0.439  Sum_probs=33.5

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            567899999999999999999999999 999999984

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.10  E-value=0.13  Score=50.24  Aligned_cols=120  Identities=19%  Similarity=0.302  Sum_probs=78.4

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ..+.+++|++.....++.    +++.+.++.+ .++.+.|+-|-.|...    ++|+    -+.+.+++--.=-  ||  
T Consensus        52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~----~i~~----~~i~~~I~p~KDV--DGl~  121 (282)
T PRK14182         52 RKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPK----HVDE----RAVLDAISPAKDA--DGFH  121 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH----HHHHhccCcccCc--CCCC
Confidence            456889999988777753    3577777777 5678999999999852    2221    1222233322100  11  


Q ss_pred             -----eE-EEE-----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310          331 -----KL-IGY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD  398 (409)
Q Consensus       331 -----~l-~G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n  398 (409)
                           ++ .|.     -.--.|++.-|+..             +.+++||+++|+|-+. .||.++.-|.+.|+.|+++.
T Consensus       122 ~~n~g~l~~g~~~~~~PcTp~avi~ll~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtich  188 (282)
T PRK14182        122 PFNVGALSIGIAGVPRPCTPAGVMRMLDEA-------------RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAH  188 (282)
T ss_pred             HhHHHHHhCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence                 11 111     11135666666542             3678999999999877 99999999999999999887


Q ss_pred             CC
Q 015310          399 ID  400 (409)
Q Consensus       399 R~  400 (409)
                      ..
T Consensus       189 s~  190 (282)
T PRK14182        189 SR  190 (282)
T ss_pred             CC
Confidence            53

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.07  E-value=0.081  Score=55.17  Aligned_cols=42  Identities=36%  Similarity=0.507  Sum_probs=38.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      ..+.||+++|+|.|..||+++..|..+|++|+++++++.++.
T Consensus       250 ~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~  291 (476)
T PTZ00075        250 VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICAL  291 (476)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHH
Confidence            568899999999999999999999999999999999877653

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=95.05  E-value=3.5  Score=43.53  Aligned_cols=210  Identities=15%  Similarity=0.075  Sum_probs=135.7

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      +.+|++.-++..-+.|.+.+|.-    .|-   +...++.+.+..+++. .+.++-.-+|-.+==|....+++-....++
T Consensus        25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~  104 (499)
T PRK12330         25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE  104 (499)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence            45677777777777899999997    663   1222455667777654 378888889977666766777777788899


Q ss_pred             HHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEE--EEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015310           93 LAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRF--IVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVN--D  165 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~ki--I~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~  165 (409)
                      .+.+.|+|.+-|=....+ +.++..+ ..++.+..+  -++|-. ...  +.+.+.++.+++.+.|||.+=|+=|.-  +
T Consensus       105 ~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~--t~e~~~~~a~~l~~~Gad~I~IkDtaGll~  182 (499)
T PRK12330        105 KSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIH--TVEGFVEQAKRLLDMGADSICIKDMAALLK  182 (499)
T ss_pred             HHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCC--CHHHHHHHHHHHHHcCCCEEEeCCCccCCC
Confidence            999999999887544433 1112222 223333333  344411 111  357799999999999999998886665  5


Q ss_pred             HhHHHHHHHHhccC---CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhhc
Q 015310          166 ITEIARIFQLLSHC---QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKVE  232 (409)
Q Consensus       166 ~~D~~~ll~~~~~~---~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~~  232 (409)
                      +.++.++.+.+.+.   +.|+-.=  +.--++..+=+..-.-|....-+++.. +-.+||++.+++...++..
T Consensus       183 P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~~aGn~atE~vv~~L~~~  255 (499)
T PRK12330        183 PQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESLVEMLEGT  255 (499)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccccccccchhHHHHHHHHHhc
Confidence            78888888887543   3554321  222234444444444555544445443 4578999999998887643

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.03  E-value=0.14  Score=50.07  Aligned_cols=121  Identities=17%  Similarity=0.244  Sum_probs=78.1

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      .+.++++|++.....++.    +++.+.++.+ .++++.|+-|-+|+...    +|+   . +.+.+++--.=-  ||  
T Consensus        55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~----i~~---~-~i~~~I~p~KDV--DGl~  124 (284)
T PRK14177         55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQ----IDE---R-AAFDRIALEKDV--DGVT  124 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH---H-HHHhccCccccc--ccCC
Confidence            457899999988877753    3576777777 45789999999997522    221   1 111222221100  11  


Q ss_pred             -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe-
Q 015310          331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD-  398 (409)
Q Consensus       331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n-  398 (409)
                           ++ .|..    .--.|++.-|+..             +.+++||+++|+|.+. .||.++.-|.+.|+.|+++. 
T Consensus       125 ~~n~g~l~~g~~~~~PcTp~avi~ll~~y-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs  191 (284)
T PRK14177        125 TLSFGKLSMGVETYLPCTPYGMVLLLKEY-------------GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHS  191 (284)
T ss_pred             hhhHHHHHcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCC
Confidence                 11 1111    1125666665542             3679999999999877 99999999999999999987 


Q ss_pred             CCh
Q 015310          399 IDF  401 (409)
Q Consensus       399 R~~  401 (409)
                      ||.
T Consensus       192 ~T~  194 (284)
T PRK14177        192 KTQ  194 (284)
T ss_pred             CCC
Confidence            443

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=95.02  E-value=1  Score=44.12  Aligned_cols=121  Identities=18%  Similarity=0.163  Sum_probs=79.0

Q ss_pred             HHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCc------------------cchHHHHH-
Q 015310           57 EIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVA------------------SNILGKQY-  117 (409)
Q Consensus        57 ~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~------------------~~~~~~l~-  117 (409)
                      ..+.+..++|+++..    |+|   ++.....+..+..++.|+.-|-||-...                  ++..+.+. 
T Consensus        71 ~~I~~a~~~Pv~~D~----d~G---g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~A  143 (285)
T TIGR02320        71 EFMFDVTTKPIILDG----DTG---GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRA  143 (285)
T ss_pred             HHHHhhcCCCEEEec----CCC---CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHH
Confidence            344455699999986    555   4677777888999999999999976531                  22334443 


Q ss_pred             --hccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc--CCCCEE
Q 015310          118 --SSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH--CQVPII  184 (409)
Q Consensus       118 --~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~--~~~p~i  184 (409)
                        .++...--+|...-| +-..-..++.+++.+...+.|||.+=+-..+.+.+++.++.+....  .+.|++
T Consensus       144 a~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~  215 (285)
T TIGR02320       144 GKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV  215 (285)
T ss_pred             HHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE
Confidence              222222123333322 2112247888999999999999999876556888888888776543  245764

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.01  E-value=0.032  Score=53.35  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=32.3

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            467899999999999999999999999 99999875

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=94.99  E-value=1.2  Score=41.58  Aligned_cols=119  Identities=17%  Similarity=0.183  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCc
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD  100 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~d  100 (409)
                      +..++.+-++.+...|+.++|+  +.      .+.++.+++..++|++.-+|..-++...-.++  +.+.++.+.+.|++
T Consensus        25 ~~~~i~~~a~~~~~~G~~~~~~--~~------~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~--~~~~~~~a~~aGad   94 (219)
T cd04729          25 SPEIMAAMALAAVQGGAVGIRA--NG------VEDIRAIRARVDLPIIGLIKRDYPDSEVYITP--TIEEVDALAAAGAD   94 (219)
T ss_pred             cHHHHHHHHHHHHHCCCeEEEc--CC------HHHHHHHHHhCCCCEEEEEecCCCCCCceeCC--CHHHHHHHHHcCCC
Confidence            3345666677777889999884  21      23566666667999987666432221111121  34567888999999


Q ss_pred             EEEEeccC---cc-chHHHHH-hccCCC-cEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310          101 YVDFELKV---AS-NILGKQY-SSHQSG-TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus       101 yvDiEl~~---~~-~~~~~l~-~~~~~~-~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      +|=+....   +. +...+++ ..++.+ ..++...|+    |  ++.    .++.+.|+|++++
T Consensus        95 ~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t----~--~ea----~~a~~~G~d~i~~  149 (219)
T cd04729          95 IIALDATDRPRPDGETLAELIKRIHEEYNCLLMADIST----L--EEA----LNAAKLGFDIIGT  149 (219)
T ss_pred             EEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEECCC----H--HHH----HHHHHcCCCEEEc
Confidence            88665433   21 1233343 333344 677776552    2  333    5566789999875

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.97  E-value=0.16  Score=49.69  Aligned_cols=120  Identities=19%  Similarity=0.321  Sum_probs=76.5

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|++.....++.    +++.+.++.+ .++++.|+-|-+|.-.    ++|+   . +.+.+++--.=-  ||  
T Consensus        51 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~----~i~~---~-~i~~~I~p~KDV--DGl~  120 (287)
T PRK14173         51 DRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPP----HIDF---Q-RVLEAIDPLKDV--DGFH  120 (287)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCccccc--cccC
Confidence            346789999998877763    3577777777 4567999999999752    2222   1 122222221100  11  


Q ss_pred             -----eE-EEE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeC
Q 015310          331 -----KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       331 -----~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR  399 (409)
                           ++ .|.    -.--.|++.-|+..             +.+++||+++|+|.+. +|+.++.-|.+.|+.|+++.+
T Consensus       121 ~~N~g~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs  187 (287)
T PRK14173        121 PLNVGRLWMGGEALEPCTPAGVVRLLKHY-------------GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHS  187 (287)
T ss_pred             hhhhHHHhcCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCC
Confidence                 11 111    11124555555432             3678999999999877 999999999999999988764


Q ss_pred             C
Q 015310          400 D  400 (409)
Q Consensus       400 ~  400 (409)
                      .
T Consensus       188 ~  188 (287)
T PRK14173        188 K  188 (287)
T ss_pred             C
Confidence            3

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.96  E-value=0.044  Score=54.41  Aligned_cols=45  Identities=29%  Similarity=0.285  Sum_probs=40.7

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .++.++.++|-|+ .|.|++++.+|+..|++|++.+|+.+++++.+
T Consensus        31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~   76 (314)
T KOG1208|consen   31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAK   76 (314)
T ss_pred             ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            4577899999995 99999999999999999999999999988764

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=94.90  E-value=3.6  Score=43.16  Aligned_cols=210  Identities=13%  Similarity=0.110  Sum_probs=128.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEE----EecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEI----RLDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vEl----RlD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      +.++.+.-++...+.|.+.+|.    ..|.   |-..++.+.+..+++. .+.++-.-+|..+--|.....++-....++
T Consensus        23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~  102 (467)
T PRK14041         23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK  102 (467)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence            4566666677777789999998    3442   1122345566666654 366777777877766765555555666788


Q ss_pred             HHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEEEEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015310           93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--DI  166 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~--~~  166 (409)
                      .+++.|++.|-|=....+  ...+.+..+++.+..+.+.... ...|  +.+.+.++.+++.+.|||.+-|+=|.-  ++
T Consensus       103 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~-t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P  181 (467)
T PRK14041        103 KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISY-TVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTP  181 (467)
T ss_pred             HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEe-ccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCcCH
Confidence            999999999887655543  2222222345556666544332 1124  457789999999999999988876654  57


Q ss_pred             hHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          167 TEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       167 ~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      .++.++.+.+.+. +.|+-.=  +.--+|..+=+..-..|....-+++.. +--.||++.+++...++.
T Consensus       182 ~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~gagN~atE~lv~~L~~  250 (467)
T PRK14041        182 KRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGTSQPPFESMYYAFRE  250 (467)
T ss_pred             HHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCCCChhHHHHHHHHHh
Confidence            8888888776543 5554211  222233344444444454443344332 122479999998887764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.90  E-value=0.034  Score=52.51  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=31.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            456799999999999999999999999 99999755

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.90  E-value=0.17  Score=49.42  Aligned_cols=118  Identities=18%  Similarity=0.240  Sum_probs=76.4

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL  332 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l  332 (409)
                      ....+++|++.....++.    +++.+.++.+ .++.+.|+-|-.|.-.    ++|+   . +.+.+++--.=-  || +
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~----~i~~---~-~i~~~I~p~KDV--DG-l  121 (284)
T PRK14170         53 QKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPE----HISE---E-KVIDTISYDKDV--DG-F  121 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CCCH---H-HHHhccCcccCc--cc-C
Confidence            446789999988777764    3566777777 5678999999999752    2222   1 122222221100  11 1


Q ss_pred             EEEcC-------------cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310          333 IGYNT-------------DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD  398 (409)
Q Consensus       333 ~G~NT-------------D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n  398 (409)
                      +-+|.             --.|++.-|+..             +.+++||+|+|+|.+. +||.++.-|.+.|+.|+++.
T Consensus       122 ~p~N~g~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtich  188 (284)
T PRK14170        122 HPVNVGNLFIGKDSFVPCTPAGIIELIKST-------------GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAH  188 (284)
T ss_pred             ChhhhhHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence            11111             135666665532             3688999999999877 99999999999999998875


Q ss_pred             C
Q 015310          399 I  399 (409)
Q Consensus       399 R  399 (409)
                      .
T Consensus       189 s  189 (284)
T PRK14170        189 S  189 (284)
T ss_pred             C
Confidence            4

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.85  E-value=0.035  Score=55.70  Aligned_cols=36  Identities=33%  Similarity=0.454  Sum_probs=33.3

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            557899999999999999999999999 999999874

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=94.85  E-value=0.85  Score=47.22  Aligned_cols=135  Identities=16%  Similarity=0.183  Sum_probs=81.9

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCC-cEEEEeccCCCCCCCCCCHHHH
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPL-PVLIVYRPKWAGGLYEGDEHKR   87 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~-PiI~T~R~~~eGG~~~~~~~~~   87 (409)
                      .+|++++-+-..++++.++.++.+.+.|+|++|.-..... ....+.++.+.+.... .++..+|....|       +. 
T Consensus         2 ~~~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~-~~~~~~i~~l~~~~~~~~ii~D~kl~d~g-------~~-   72 (430)
T PRK07028          2 ERPILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIK-SEGMNAIRTLRKNFPDHTIVADMKTMDTG-------AI-   72 (430)
T ss_pred             CCceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHH-HhhHHHHHHHHHHCCCCEEEEEeeeccch-------HH-
Confidence            3789999999999999999999988899999996322110 0112355666554433 455666765332       12 


Q ss_pred             HHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                        .++.+.+.|+++|-+-...+.....+++ ..++.+.++++-..   .+++.   .+.++++.+.|+|++++-
T Consensus        73 --~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~---s~~t~---~e~~~~a~~~GaD~I~~~  138 (430)
T PRK07028         73 --EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLI---NVPDP---VKRAVELEELGVDYINVH  138 (430)
T ss_pred             --HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEec---CCCCH---HHHHHHHHhcCCCEEEEE
Confidence              4567888999998864322221122222 33446777775211   11111   233566677899999875

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=94.82  E-value=1  Score=44.20  Aligned_cols=84  Identities=23%  Similarity=0.296  Sum_probs=59.4

Q ss_pred             CeeEEEeeccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCC----------CChhHHHH----HHhcCCCcEEEEeccC
Q 015310           10 TTMICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNF----------QPGKDLEI----ILTKKPLPVLIVYRPK   74 (409)
Q Consensus        10 ~~~icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~~----------~~~~~l~~----l~~~~~~PiI~T~R~~   74 (409)
                      +|. .+++.+. +.+++.+.++.+.+.|+|++|+=+.+-...          .+.+.+.+    +++..++|+.+-+|..
T Consensus       100 ~p~-i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~  178 (299)
T cd02940         100 KIL-IASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPN  178 (299)
T ss_pred             CeE-EEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCC
Confidence            454 5888888 999999888887667999999988874421          11223333    3344589999998852


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015310           75 WAGGLYEGDEHKRLEALHLAEDLGADYVD  103 (409)
Q Consensus        75 ~eGG~~~~~~~~~~~ll~~~~~~g~dyvD  103 (409)
                               .++..++.+.+.+.|+|.|-
T Consensus       179 ---------~~~~~~~a~~~~~~Gadgi~  198 (299)
T cd02940         179 ---------ITDIREIARAAKEGGADGVS  198 (299)
T ss_pred             ---------chhHHHHHHHHHHcCCCEEE
Confidence                     22566777888888998774

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=94.80  E-value=0.36  Score=47.01  Aligned_cols=89  Identities=24%  Similarity=0.279  Sum_probs=66.0

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-------CC---hhHHHHHHhcCCCcEEEEeccCCCCC
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-------QP---GKDLEIILTKKPLPVLIVYRPKWAGG   78 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-------~~---~~~l~~l~~~~~~PiI~T~R~~~eGG   78 (409)
                      ..| +.++|.+.+.+++.+.++.+.+.|+|+||+=+-+-...       ++   .+.++.+++..++|+++-++..    
T Consensus        98 ~~p-vi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----  172 (289)
T cd02810          98 GQP-LIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----  172 (289)
T ss_pred             CCe-EEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----
Confidence            344 56899999999999999988888999999987643211       11   1234445555689999998863    


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           79 LYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                         .++++..++.+.+.+.|+|+|.+-
T Consensus       173 ---~~~~~~~~~a~~l~~~Gad~i~~~  196 (289)
T cd02810         173 ---FDLEDIVELAKAAERAGADGLTAI  196 (289)
T ss_pred             ---CCHHHHHHHHHHHHHcCCCEEEEE
Confidence               246677888899999999999975

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=94.79  E-value=3.3  Score=44.77  Aligned_cols=207  Identities=14%  Similarity=0.124  Sum_probs=130.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      +.++.+.-++...+.|.+.+|.-    .|.   +-..++.+.+..+++. .+.++-.-+|..+-=|..+.+++-..+.++
T Consensus        24 ~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~  103 (592)
T PRK09282         24 RTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE  103 (592)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence            45666666667777899999995    563   2222455666666655 368888888877777776677777788899


Q ss_pred             HHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEEE--EeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--
Q 015310           93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFI--VSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--  164 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~kiI--~S~H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~--  164 (409)
                      .+.+.|++.+-|=....+  +..+.+..+++.+..+-  +||-   ..|  +.+.+.+..+++.+.|||.+=|+=|.-  
T Consensus       104 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t---~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~  180 (592)
T PRK09282        104 KAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYT---TSPVHTIEKYVELAKELEEMGCDSICIKDMAGLL  180 (592)
T ss_pred             HHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEec---cCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCc
Confidence            999999998877655433  22222223444555554  3332   134  457799999999999999988876654  


Q ss_pred             CHhHHHHHHHHhccC-CCCEEEE---EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          165 DITEIARIFQLLSHC-QVPIIAY---SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       165 ~~~D~~~ll~~~~~~-~~p~i~~---~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      ++.++.++.+.+.+. +.|+ .+   +..-++..+=+..-..|..+.-+++.. +--.||++++++...++.
T Consensus       181 ~P~~~~~lv~~lk~~~~~pi-~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~agn~~~e~vv~~L~~  251 (592)
T PRK09282        181 TPYAAYELVKALKEEVDLPV-QLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFGTSQPPTESMVAALKG  251 (592)
T ss_pred             CHHHHHHHHHHHHHhCCCeE-EEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCCCcCCHhHHHHHHHHHh
Confidence            477888887776433 4443 33   233344444444444454443333322 112378888887766653

>PLN02494 adenosylhomocysteinase

Probab=94.77  E-value=0.055  Score=56.34  Aligned_cols=41  Identities=34%  Similarity=0.528  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      ..+.|++++|+|.|..|++++..+..+|++|+++++++.++
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~  290 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICA  290 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhh
Confidence            44789999999999999999999999999999999998764

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.76  E-value=0.047  Score=48.60  Aligned_cols=38  Identities=26%  Similarity=0.352  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++|++++|+|+|.+|..-+..|.+.|++|+|++.+.
T Consensus         9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~   46 (157)
T PRK06719          9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEI   46 (157)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCcc
Confidence            56889999999999999999999999999999998653

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=94.73  E-value=1.5  Score=38.82  Aligned_cols=124  Identities=16%  Similarity=0.111  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCh----hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPG----KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~----~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (409)
                      +...+.++.+.+.|+|+++++..........    +.+..+.+..+.|+++-......       .+......+.+.+.|
T Consensus        12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~g   84 (200)
T cd04722          12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDA-------AAAVDIAAAAARAAG   84 (200)
T ss_pred             HHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCc-------hhhhhHHHHHHHHcC
Confidence            4555566666677999999998765543221    12555556678999988764321       111111134667789


Q ss_pred             CcEEEEeccCc------cchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015310           99 ADYVDFELKVA------SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS  162 (409)
Q Consensus        99 ~dyvDiEl~~~------~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~  162 (409)
                      +|+|.|-....      .+.++.+.... .+..++...|......   +.     .+.+.|+|.+.+...
T Consensus        85 ~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~---~~-----~~~~~g~d~i~~~~~  145 (200)
T cd04722          85 ADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELA---AA-----AAEEAGVDEVGLGNG  145 (200)
T ss_pred             CCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccc---hh-----hHHHcCCCEEEEcCC
Confidence            99998877663      23344443221 3688888887532111   11     156779999887654

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.72  E-value=0.21  Score=48.69  Aligned_cols=127  Identities=17%  Similarity=0.218  Sum_probs=77.8

Q ss_pred             HHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHH--hhhhhhcHHHHHhccceEEEEeCCC
Q 015310          257 HNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSD  329 (409)
Q Consensus       257 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~--~~~d~~~~~A~~igAvNti~~~~~~  329 (409)
                      -.+.++++|++.....++.    +++...++.+ .++.+.|+-|-+|+...+-  ..++.+++. +.+-..+..-    -
T Consensus        51 k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~N----~  125 (282)
T PRK14169         51 KQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD-KDVDGFSPVS----V  125 (282)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChhh----h
Confidence            3457889999988777764    3577777777 4678999999999753221  111111110 1111111100    0


Q ss_pred             CeEE-EE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe-CCh
Q 015310          330 GKLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD-IDF  401 (409)
Q Consensus       330 g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n-R~~  401 (409)
                      |+++ |.    -.--.|++.-|+..             +.+++||+++|+|.+. +||.++.-|.+.|+.|+++. ||.
T Consensus       126 g~l~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~  191 (282)
T PRK14169        126 GRLWANEPTVVASTPYGIMALLDAY-------------DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTR  191 (282)
T ss_pred             HHHhcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCC
Confidence            1111 10    11124566655442             3678999999999877 99999999999999999985 554

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.70  E-value=0.56  Score=42.95  Aligned_cols=122  Identities=17%  Similarity=0.102  Sum_probs=68.1

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      +++.-+...+.++....++.+.+.|+.++|+|..-...   .+.++.+++..  |.+ ..    .+|.. ... ++   +
T Consensus        13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~---~e~~~~~~~~~--~~~-~~----g~gtv-l~~-d~---~   77 (187)
T PRK07455         13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQP---AELISQLREKL--PEC-II----GTGTI-LTL-ED---L   77 (187)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCH---HHHHHHHHHhC--CCc-EE----eEEEE-EcH-HH---H
Confidence            45566888999999999999999999999999764432   23344343322  221 00    11221 122 33   3


Q ss_pred             HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                      +.+++.|+++|=+--.. .+..+ .... .+--.+++ .|    ||  +|    +.++.+.|+|++|+  .|.
T Consensus        78 ~~A~~~gAdgv~~p~~~-~~~~~-~~~~-~~~~~i~G-~~----t~--~e----~~~A~~~Gadyv~~--Fpt  134 (187)
T PRK07455         78 EEAIAAGAQFCFTPHVD-PELIE-AAVA-QDIPIIPG-AL----TP--TE----IVTAWQAGASCVKV--FPV  134 (187)
T ss_pred             HHHHHcCCCEEECCCCC-HHHHH-HHHH-cCCCEEcC-cC----CH--HH----HHHHHHCCCCEEEE--CcC
Confidence            46778899998322111 11111 1111 12233455 55    33  23    34555689999998  554

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.67  E-value=0.23  Score=48.40  Aligned_cols=124  Identities=20%  Similarity=0.240  Sum_probs=80.0

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL  332 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l  332 (409)
                      ....+++|++.....++.    +++.+.++.+ .++++.|+-|-.|.-..    +|+   . +.+.+++--. + -|| +
T Consensus        48 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~----i~~---~-~v~~~I~p~K-D-VDG-l  116 (279)
T PRK14178         48 HRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKG----VDT---E-RVIAAILPEK-D-VDG-F  116 (279)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCC----CCH---H-HHHhccCccc-C-ccc-C
Confidence            456789999988777754    3677777777 56789999999997422    222   1 1111222111 0 011 1


Q ss_pred             EEEc-------------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEech-hHHHHHHHHHHhCCCeEEEEe
Q 015310          333 IGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFD  398 (409)
Q Consensus       333 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~n  398 (409)
                      +-+|             .--.|++.-|+..             +.+++|++|+|+|-+ -.+|.++.-|...|+.|+++.
T Consensus       117 ~~~n~g~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~h  183 (279)
T PRK14178        117 HPLNLGRLVSGLPGFAPCTPNGIMTLLHEY-------------KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICH  183 (279)
T ss_pred             ChhhHHHHhCCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEe
Confidence            1111             1124566655432             367899999999988 599999999999999999988


Q ss_pred             CChHHHH
Q 015310          399 IDFEQSL  405 (409)
Q Consensus       399 R~~~ka~  405 (409)
                      ++....+
T Consensus       184 s~t~~L~  190 (279)
T PRK14178        184 SKTENLK  190 (279)
T ss_pred             cChhHHH
Confidence            7654433

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.64  E-value=0.043  Score=53.18  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=32.4

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++.+|+|+|+||+|..++.+|+..|+ +|+|++.+
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            567899999999999999999999998 99999865

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.59  E-value=0.28  Score=47.93  Aligned_cols=120  Identities=15%  Similarity=0.258  Sum_probs=76.1

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      .+.++++|++.....++-    +++.+.++.+ .++++.|+-|-+|....    +|+   . +.+.+++--. + =||  
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~----i~~---~-~i~~~I~p~K-D-VDGl~  123 (284)
T PRK14190         54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKH----IDE---K-AVIERISPEK-D-VDGFH  123 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH---H-HHHhcCCccc-c-ccccC
Confidence            456889999988777764    3677777777 46689999999997522    221   1 1111222111 0 011  


Q ss_pred             -----eE-EEE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeC
Q 015310          331 -----KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       331 -----~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR  399 (409)
                           ++ .|.    -.--.|++.-|+..             +.+++||+++|+|.+. +||.++.-|.+.|+.|+++..
T Consensus       124 ~~n~g~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs  190 (284)
T PRK14190        124 PINVGRMMLGQDTFLPCTPHGILELLKEY-------------NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHS  190 (284)
T ss_pred             HhhHHHHhcCCCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeC
Confidence                 11 110    01124555555432             3678999999999877 999999999999999998854


Q ss_pred             C
Q 015310          400 D  400 (409)
Q Consensus       400 ~  400 (409)
                      .
T Consensus       191 ~  191 (284)
T PRK14190        191 K  191 (284)
T ss_pred             C
Confidence            3

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.58  E-value=0.044  Score=55.33  Aligned_cols=36  Identities=28%  Similarity=0.384  Sum_probs=33.0

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      +++++|+|+|+||.|..++..|+..|+ +++|++.+.
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            457899999999999999999999999 999998874

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=94.58  E-value=3.4  Score=39.84  Aligned_cols=84  Identities=18%  Similarity=0.205  Sum_probs=53.7

Q ss_pred             EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHH-hcCCCc-EEEE
Q 015310           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIIL-TKKPLP-VLIV   70 (409)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~-~~~~~P-iI~T   70 (409)
                      -++.-.++.+...+-++...+.|+|++|+-+-+-++.-+.                     +.+++++ +..+.| ++.|
T Consensus        17 yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~   96 (258)
T PRK13111         17 YITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMT   96 (258)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            4566778999999888888889999999999876654321                     2334444 335788 5566


Q ss_pred             eccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015310           71 YRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (409)
Q Consensus        71 ~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDi  104 (409)
                      +-+.-    +...   .-++++.+.+.|++-+=|
T Consensus        97 Y~N~i----~~~G---~e~f~~~~~~aGvdGvii  123 (258)
T PRK13111         97 YYNPI----FQYG---VERFAADAAEAGVDGLII  123 (258)
T ss_pred             cccHH----hhcC---HHHHHHHHHHcCCcEEEE
Confidence            54320    1111   124577777788765433

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=94.57  E-value=2.6  Score=42.24  Aligned_cols=199  Identities=17%  Similarity=0.210  Sum_probs=111.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEE---------EecC-CCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEI---------RLDC-INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vEl---------RlD~-l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      +.++..+-++...+.|+|.||.         -+++ +...++.+.+..+++.. +..+..-+++    |.  ..    .+
T Consensus        22 ~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~p----g~--~~----~~   91 (333)
T TIGR03217        22 TIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLP----GI--GT----VH   91 (333)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEecc----Cc--cC----HH
Confidence            3455555556666789999999         3333 33334445555555433 3344333333    11  11    23


Q ss_pred             HHHHHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015310           90 ALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--D  165 (409)
Q Consensus        90 ll~~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~  165 (409)
                      -++.+.+.|++.|-|=....+ +...+.+ .+++.+.++.++.-+-..+ +.+++.++.+.+.++|||.+=++=+.-  +
T Consensus        92 dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~-~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~  170 (333)
T TIGR03217        92 DLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMT-PPEKLAEQAKLMESYGADCVYIVDSAGAML  170 (333)
T ss_pred             HHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCC-CHHHHHHHHHHHHhcCCCEEEEccCCCCCC
Confidence            368888999999887655443 2233333 4566677776655442223 357899999999999999987775544  5


Q ss_pred             HhHHHHHHHHhccC-C--CCEEEEE-cCc--cchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          166 ITEIARIFQLLSHC-Q--VPIIAYS-VGE--RGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       166 ~~D~~~ll~~~~~~-~--~p~i~~~-MG~--~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      ++|+.++...+.+. +  .|+ .+- =-.  ++...=+..-.-|....=+++.. +...|+.+++++...++.
T Consensus       171 P~~v~~~v~~l~~~l~~~i~i-g~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~~~E~lv~~l~~  242 (333)
T TIGR03217       171 PDDVRDRVRALKAVLKPETQV-GFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVLDR  242 (333)
T ss_pred             HHHHHHHHHHHHHhCCCCceE-EEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccCccHHHHHHHHHh
Confidence            88998888876543 2  333 221 011  11111111112233332233322 245788888887766553

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.53  E-value=0.25  Score=48.20  Aligned_cols=120  Identities=18%  Similarity=0.238  Sum_probs=76.7

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|++.....++.    +++...++.+ .++++.|+-|-+|....    +|+   . +.+.+++--.=-  ||  
T Consensus        52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~----i~~---~-~i~~~I~p~KDV--DGl~  121 (282)
T PRK14166         52 AKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDH----ICK---D-LILESIISSKDV--DGFH  121 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCC----CCH---H-HHHhccCcccCc--ccCC
Confidence            346789999988777763    3566667766 46789999999997532    221   1 122222221100  11  


Q ss_pred             -----eE-EEEc-----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310          331 -----KL-IGYN-----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD  398 (409)
Q Consensus       331 -----~l-~G~N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n  398 (409)
                           ++ .|.+     .--.|++.-|+..             +.+++||+++|+|-+. +||.++.-|.+.|+.|+++.
T Consensus       122 ~~N~g~l~~g~~~~~~PcTp~avi~lL~~y-------------~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~ch  188 (282)
T PRK14166        122 PINVGYLNLGLESGFLPCTPLGVMKLLKAY-------------EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCH  188 (282)
T ss_pred             hhhhHHHhcCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence                 11 1211     1135666655542             3678999999999877 99999999999999999887


Q ss_pred             CC
Q 015310          399 ID  400 (409)
Q Consensus       399 R~  400 (409)
                      +.
T Consensus       189 s~  190 (282)
T PRK14166        189 IK  190 (282)
T ss_pred             CC
Confidence            53

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.52  E-value=0.24  Score=48.38  Aligned_cols=120  Identities=18%  Similarity=0.257  Sum_probs=77.6

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL  332 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l  332 (409)
                      ....+++|++.....++.    +++.+.++.+ .++.+.|+-|-+|.-.    ++|+   . +.+.+++.-.=-  || +
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~----~id~---~-~i~~~I~p~KDV--DG-l  121 (286)
T PRK14184         53 ERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPK----GLDS---Q-RCLELIDPAKDV--DG-F  121 (286)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCC----CCCH---H-HHHhccCcccCc--cc-C
Confidence            346789999988777763    3577777777 4678999999999742    2222   1 122222221100  12 2


Q ss_pred             EEEcC-------------cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHh----CCCeE
Q 015310          333 IGYNT-------------DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKS----RGARV  394 (409)
Q Consensus       333 ~G~NT-------------D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~----~G~~i  394 (409)
                      +-+|.             --.|++.-|+..             +.+++||+++|+|-+. +||.++.-|.+    .|+.|
T Consensus       122 ~~~N~g~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtV  188 (286)
T PRK14184        122 HPENMGRLALGLPGFRPCTPAGVMTLLERY-------------GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATV  188 (286)
T ss_pred             CHhhHHHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEE
Confidence            22221             124666665542             3678999999999877 99999999988    78888


Q ss_pred             EEEeCCh
Q 015310          395 VIFDIDF  401 (409)
Q Consensus       395 ~v~nR~~  401 (409)
                      +++..+.
T Consensus       189 t~~hs~t  195 (286)
T PRK14184        189 TVCHSRT  195 (286)
T ss_pred             EEEeCCc
Confidence            8886543

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.45  E-value=0.069  Score=56.97  Aligned_cols=42  Identities=21%  Similarity=0.096  Sum_probs=37.5

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+|+.++|.|+ ||.|++++..|.+.|++|+++.|+.++++.+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l  120 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESL  120 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            35789999997 8899999999999999999999999887654

>cd00945 Aldolase_Class_I Class I aldolases

Probab=94.44  E-value=1.5  Score=39.34  Aligned_cols=93  Identities=13%  Similarity=0.181  Sum_probs=64.6

Q ss_pred             CeeEEEeeccCC----HHHHHHHHHHHHhcCCCEEEEEecCCCCCC--C---hhHHHHHHhc--CCCcEEEEeccCCCCC
Q 015310           10 TTMICAPLMAQS----VEQVLSNMYQAKAEGADVVEIRLDCINNFQ--P---GKDLEIILTK--KPLPVLIVYRPKWAGG   78 (409)
Q Consensus        10 ~~~icv~l~~~~----~~e~~~~~~~~~~~~aD~vElRlD~l~~~~--~---~~~l~~l~~~--~~~PiI~T~R~~~eGG   78 (409)
                      +..+++-+...+    .++..++++.+.+.|+|.+.+-..+....+  .   .+.++.+.+.  .++|+++..++...  
T Consensus        48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~--  125 (201)
T cd00945          48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL--  125 (201)
T ss_pred             CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCC--
Confidence            445567777777    899999999999999999999877653322  1   1334445555  48999999886533  


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015310           79 LYEGDEHKRLEALHLAEDLGADYVDFELK  107 (409)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~~g~dyvDiEl~  107 (409)
                         .+.+.-.++.+.+...|+++|..-..
T Consensus       126 ---~~~~~~~~~~~~~~~~g~~~iK~~~~  151 (201)
T cd00945         126 ---KTADEIAKAARIAAEAGADFIKTSTG  151 (201)
T ss_pred             ---CCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence               34555556656666778999876554

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=94.42  E-value=0.53  Score=45.76  Aligned_cols=137  Identities=19%  Similarity=0.249  Sum_probs=87.5

Q ss_pred             eeeccCCcccCCHHhHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHH
Q 015310          242 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  316 (409)
Q Consensus       242 ~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~  316 (409)
                      -++|+.-+....=.+-.+..++.|+...+..++.    +++...+..+ .++++.|.-|..|.=    +++|+   . +.
T Consensus        36 ilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp----~hld~---~-~i  107 (283)
T COG0190          36 ILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLP----KHLDE---Q-KL  107 (283)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCC----CCCCH---H-HH
Confidence            3556443333333456678999999988887753    4677777777 678999999999963    13331   0 11


Q ss_pred             hccceEEEEe----C-CCCeEEEEcCc------HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHH
Q 015310          317 IAAVNTIIRR----P-SDGKLIGYNTD------CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALA  384 (409)
Q Consensus       317 igAvNti~~~----~-~~g~l~G~NTD------~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~  384 (409)
                      +.++.--.--    + .-|++. .+..      -.|++..|++.             +.++.|++++|+|.+. +||-++
T Consensus       108 l~~I~p~KDVDG~hp~N~g~L~-~~~~~~~PCTp~gi~~ll~~~-------------~i~l~Gk~~vVVGrS~iVGkPla  173 (283)
T COG0190         108 LQAIDPEKDVDGFHPYNLGKLA-QGEPGFLPCTPAGIMTLLEEY-------------GIDLRGKNVVVVGRSNIVGKPLA  173 (283)
T ss_pred             HhhcCcCCCccccChhHhcchh-cCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHH
Confidence            1111110000    0 002222 1122      36888877653             2678999999999888 999999


Q ss_pred             HHHHhCCCeEEEEeCC
Q 015310          385 FGAKSRGARVVIFDID  400 (409)
Q Consensus       385 ~aL~~~G~~i~v~nR~  400 (409)
                      .-|...++.|+|+...
T Consensus       174 ~lL~~~naTVtvcHs~  189 (283)
T COG0190         174 LLLLNANATVTVCHSR  189 (283)
T ss_pred             HHHHhCCCEEEEEcCC
Confidence            9999999999998753

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.41  E-value=0.36  Score=47.41  Aligned_cols=119  Identities=15%  Similarity=0.185  Sum_probs=76.6

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      .+.++++|++.....++.    +++...++.+ .++...|+-|-+|...    ++|+   . +.+.+++--.=-  ||  
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~----~i~~---~-~i~~~I~p~KDV--DGl~  123 (294)
T PRK14187         54 QRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPN----HIDK---N-LIINTIDPEKDV--DGFH  123 (294)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCcccCc--ccCC
Confidence            456889999988777753    3566666666 4678999999999852    2222   1 112222221100  11  


Q ss_pred             -----eE-EEEc------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310          331 -----KL-IGYN------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF  397 (409)
Q Consensus       331 -----~l-~G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~  397 (409)
                           ++ .|.+      .--.|++.-|+..             +.+++||+++|+|.+. +|+.++.-|.+.|+.|+++
T Consensus       124 ~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~c  190 (294)
T PRK14187        124 NENVGRLFTGQKKNCLIPCTPKGCLYLIKTI-------------TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTV  190 (294)
T ss_pred             hhhHHHHhCCCCCCCccCcCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEe
Confidence                 11 1211      1225556655442             3678999999999877 9999999999999999988


Q ss_pred             eC
Q 015310          398 DI  399 (409)
Q Consensus       398 nR  399 (409)
                      ..
T Consensus       191 hs  192 (294)
T PRK14187        191 HS  192 (294)
T ss_pred             CC
Confidence            75

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.36  E-value=0.051  Score=55.17  Aligned_cols=35  Identities=29%  Similarity=0.428  Sum_probs=32.4

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            456789999999999999999999999 99999887

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.35  E-value=0.19  Score=47.16  Aligned_cols=54  Identities=26%  Similarity=0.341  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      ++|...+++..+.+.         +.+++|++++|.|-|.+|+.++..|.++|+ .|.|.+.+.
T Consensus         3 g~Gv~~~~~~~~~~~---------~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211           3 GYGVVVAMKAAMKHL---------GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             hhHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            467777777766532         246889999999999999999999999998 788888765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.31  E-value=0.082  Score=55.84  Aligned_cols=41  Identities=34%  Similarity=0.250  Sum_probs=37.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+.+|+|+|+|.+|.+++..+..+|++|+++++++++.+..
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a  204 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV  204 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            47899999999999999999999999999999998876643

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.28  E-value=0.29  Score=48.09  Aligned_cols=119  Identities=18%  Similarity=0.266  Sum_probs=75.7

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      .+.++++|++.....++.    +++...++.+ .++.+.|+-|-+|....    +|+   . +.+.+++--. + =||  
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~----i~~---~-~i~~~I~p~K-D-VDGl~  122 (297)
T PRK14167         53 QRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDH----VDD---R-EVLRRIDPAK-D-VDGFH  122 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCC----CCH---H-HHHhccCccc-C-cccCC
Confidence            457899999998877764    3577777777 56789999999997532    221   1 1111222111 0 011  


Q ss_pred             -----eE-EEEc----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhC----CCeEE
Q 015310          331 -----KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSR----GARVV  395 (409)
Q Consensus       331 -----~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~----G~~i~  395 (409)
                           ++ .|.+    .--.|++.-|+..             +.+++||+|+|+|.+. .||.++.-|.+.    ++.|+
T Consensus       123 ~~n~g~l~~g~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt  189 (297)
T PRK14167        123 PENVGRLVAGDARFKPCTPHGIQKLLAAA-------------GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT  189 (297)
T ss_pred             hhhhHHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE
Confidence                 11 1111    1225566665542             3678999999999877 999999998887    67888


Q ss_pred             EEeC
Q 015310          396 IFDI  399 (409)
Q Consensus       396 v~nR  399 (409)
                      ++..
T Consensus       190 vchs  193 (297)
T PRK14167        190 VCHS  193 (297)
T ss_pred             EeCC
Confidence            8753

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.28  E-value=0.42  Score=46.74  Aligned_cols=120  Identities=18%  Similarity=0.308  Sum_probs=76.3

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|++.....++.    +++.+.++.+ .++.+.|+-|-+|...    ++|+   . +.+.+++--.=-  ||  
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~----~id~---~-~i~~~I~p~KDV--DGl~  123 (284)
T PRK14193         54 HRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPK----HLDE---N-AVLERIDPAKDA--DGLH  123 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhcCCcccCc--cCCC
Confidence            456889999988777763    3566667777 4678999999999852    2221   1 122222221100  11  


Q ss_pred             -----eE-EEE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHh--CCCeEEEE
Q 015310          331 -----KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKS--RGARVVIF  397 (409)
Q Consensus       331 -----~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~--~G~~i~v~  397 (409)
                           ++ .|.    -.--.|++.-|+..             +.+++||+++|+|.+. .|+.++.-|.+  .|+.|+++
T Consensus       124 ~~n~g~l~~~~~~~~PcTp~av~~ll~~~-------------~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvc  190 (284)
T PRK14193        124 PTNLGRLVLNEPAPLPCTPRGIVHLLRRY-------------DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLC  190 (284)
T ss_pred             hhhhhHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEe
Confidence                 11 111    11225566655432             3678999999999877 99999999988  67889988


Q ss_pred             eCC
Q 015310          398 DID  400 (409)
Q Consensus       398 nR~  400 (409)
                      ...
T Consensus       191 hs~  193 (284)
T PRK14193        191 HTG  193 (284)
T ss_pred             CCC
Confidence            753

>PRK08223 hypothetical protein; Validated

Probab=94.27  E-value=0.052  Score=53.10  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=32.3

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++.+|+|+|+||.|..++..|+..|+ +|+|++.|
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            557899999999999999999999999 99999876

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=94.26  E-value=1.4  Score=40.16  Aligned_cols=106  Identities=24%  Similarity=0.207  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHH---HHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE---IILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~---~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      ++....++.+.+.|+++|.+|.--+.+.+..+.+.   .+.+..+.|+++.-               +   .+.+.+.|+
T Consensus        13 ~~~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~---------------~---~~la~~~g~   74 (196)
T TIGR00693        13 ADLLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPFIVND---------------R---VDLALALGA   74 (196)
T ss_pred             ccHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeEEEEC---------------H---HHHHHHcCC
Confidence            34666778888899999999964332211111222   22234578888852               1   245667888


Q ss_pred             cEEEEeccCc-cchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310          100 DYVDFELKVA-SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus       100 dyvDiEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      +.|=+..... ....+.   ....+..+-+|.|+.      +++    .++.+.|+|++++
T Consensus        75 ~GvHl~~~~~~~~~~r~---~~~~~~~ig~s~h~~------~e~----~~a~~~g~dyi~~  122 (196)
T TIGR00693        75 DGVHLGQDDLPASEARA---LLGPDKIIGVSTHNL------EEL----AEAEAEGADYIGF  122 (196)
T ss_pred             CEEecCcccCCHHHHHH---hcCCCCEEEEeCCCH------HHH----HHHhHcCCCEEEE
Confidence            8776643322 222222   223566889999963      333    3456689999997

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=94.23  E-value=2.2  Score=41.26  Aligned_cols=125  Identities=14%  Similarity=0.140  Sum_probs=74.5

Q ss_pred             EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHHhcCCCc-EEEEe
Q 015310           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTKKPLP-VLIVY   71 (409)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~~~~~~P-iI~T~   71 (409)
                      -++.-.++.+...+-++...+.|||++|+-+-+-++..+.                     +.++++++..+.| ++.|+
T Consensus        20 yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y   99 (263)
T CHL00200         20 FITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTY   99 (263)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec
Confidence            3566678999988888888889999999999877655331                     2233344345667 44554


Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHH
Q 015310           72 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQA  151 (409)
Q Consensus        72 R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~  151 (409)
                      -+.-    +....   -++++.+.+.|+|.|=                          .||.    +.+|..+.++.+++
T Consensus       100 ~N~i----~~~G~---e~F~~~~~~aGvdgvi--------------------------ipDL----P~ee~~~~~~~~~~  142 (263)
T CHL00200        100 YNPV----LHYGI---NKFIKKISQAGVKGLI--------------------------IPDL----PYEESDYLISVCNL  142 (263)
T ss_pred             ccHH----HHhCH---HHHHHHHHHcCCeEEE--------------------------ecCC----CHHHHHHHHHHHHH
Confidence            3210    00011   2234455555544322                          2442    23677788888888


Q ss_pred             cCCCEEEEEeecCCHhHHHHHHHH
Q 015310          152 TGADIIKLVFSVNDITEIARIFQL  175 (409)
Q Consensus       152 ~gaDivKia~~~~~~~D~~~ll~~  175 (409)
                      .|-+.+=++....+.+....+.+.
T Consensus       143 ~gi~~I~lv~PtT~~eri~~i~~~  166 (263)
T CHL00200        143 YNIELILLIAPTSSKSRIQKIARA  166 (263)
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHh
Confidence            888777766555555555555544

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.22  E-value=0.28  Score=48.23  Aligned_cols=119  Identities=17%  Similarity=0.249  Sum_probs=76.0

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|++..-..++.    +++.+.++.+ .++.+.|+-|-.|.-..+    |+   . +.+.+++.-.=-  ||  
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i----~~---~-~i~~~I~p~KDV--DGl~  123 (297)
T PRK14186         54 EKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHL----DE---V-PLLHAIDPDKDA--DGLH  123 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCC----CH---H-HHHhccCcccCc--ccCC
Confidence            446889999987666643    3677777777 467799999999974222    21   1 122222221100  11  


Q ss_pred             -----eE-EEE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeC
Q 015310          331 -----KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       331 -----~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR  399 (409)
                           ++ .|.    -.--.|++.-|+..             +.+++||+|+|+|-+. +||.++.-|.+.|+.|+++..
T Consensus       124 ~~n~g~l~~~~~~~~PcTp~aii~lL~~~-------------~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs  190 (297)
T PRK14186        124 PLNLGRLVKGEPGLRSCTPAGVMRLLRSQ-------------QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHS  190 (297)
T ss_pred             hhhHHHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence                 11 111    11235666665542             3678999999999877 999999999999999988853

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=94.22  E-value=0.07  Score=52.29  Aligned_cols=41  Identities=32%  Similarity=0.387  Sum_probs=37.3

Q ss_pred             CCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      |+=++|-|| .|.||+-+..|++.|.+|++++||++|.+.++
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~   90 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVA   90 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            466888897 67999999999999999999999999998876

>PRK06720 hypothetical protein; Provisional

Probab=94.19  E-value=0.11  Score=46.72  Aligned_cols=42  Identities=36%  Similarity=0.551  Sum_probs=36.4

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .++++.++|.|+ ||.|++++..|.+.|++|++++|+.+.+++
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~   55 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQA   55 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            467899999997 569999999999999999999999776544

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.16  E-value=0.098  Score=46.90  Aligned_cols=42  Identities=36%  Similarity=0.326  Sum_probs=34.9

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +...+++|+|+|-+|+.++..+..+|+++++++...++.+++
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~   59 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL   59 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh
Confidence            445789999999999999999999999999999988776653

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=94.08  E-value=4  Score=44.14  Aligned_cols=207  Identities=14%  Similarity=0.084  Sum_probs=122.0

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEE----EecC-C--CCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEI----RLDC-I--NNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vEl----RlD~-l--~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      +.+|++.-++...+.|.+.+|.    .+|- +  ...++.+.+..+++. .+.|+-.-+|..+==|..+.+++-..+.++
T Consensus        25 ~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~  104 (593)
T PRK14040         25 RLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVE  104 (593)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHH
Confidence            4566666666667789999998    3552 2  122455667777654 367777667754444545556677778899


Q ss_pred             HHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEE--EEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--
Q 015310           93 LAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRF--IVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--  164 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~ki--I~S~H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~--  164 (409)
                      .+.+.|++.+-|=....+  .....+..+++.+..+  -++|-.   .|  +.+.+.+..+++.+.|||.+-|+=|.-  
T Consensus       105 ~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~---~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l  181 (593)
T PRK14040        105 RAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTT---SPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLL  181 (593)
T ss_pred             HHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEee---CCccCHHHHHHHHHHHHHcCCCEEEECCCCCCc
Confidence            999999999888644432  2222222344445443  344421   23  346789999999999999998886654  


Q ss_pred             CHhHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310          165 DITEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (409)
Q Consensus       165 ~~~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~  230 (409)
                      ++.++.++.+.+.+. +.|+=.=  +.--++..+=+..-.-|....=+++.. +--.||++++++...++
T Consensus       182 ~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~le~vv~~L~  251 (593)
T PRK14040        182 KPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSATETLVATLE  251 (593)
T ss_pred             CHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccccccccchhHHHHHHHHH
Confidence            577888777776432 4453211  112222233333333343333233222 12248888887776665

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=94.04  E-value=0.24  Score=46.84  Aligned_cols=52  Identities=31%  Similarity=0.352  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEeC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI  399 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~nR  399 (409)
                      ++|...+++..+...         +..+++++++|.|.|.+|+.++..|.+.|++|+ |.+.
T Consensus        11 g~Gv~~~~~~~~~~~---------~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076          11 GRGVAYATREALKKL---------GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             hHHHHHHHHHHHHhc---------CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            468888887766532         245789999999999999999999999999766 8777

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK06153 hypothetical protein; Provisional

Probab=94.03  E-value=0.052  Score=55.05  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++++|+|+|+||+|..++..|++.|+ +|++++-+
T Consensus       174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D  209 (393)
T PRK06153        174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD  209 (393)
T ss_pred             HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence            356789999999999999999999999 99998755

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=93.98  E-value=0.069  Score=49.40  Aligned_cols=35  Identities=26%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++.+|+|+|+||.|..++..|...|+ +|++++.+
T Consensus        17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            346789999999999999999999999 89999876

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=93.96  E-value=0.087  Score=39.97  Aligned_cols=29  Identities=34%  Similarity=0.485  Sum_probs=26.2

Q ss_pred             EEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          373 LAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       373 vlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      |||+|-+|.++++.|.+.|.+|+|+.|+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence            79999999999999999999999999864

...

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.93  E-value=0.35  Score=47.26  Aligned_cols=120  Identities=20%  Similarity=0.273  Sum_probs=77.7

Q ss_pred             HHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC-
Q 015310          257 HNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-  330 (409)
Q Consensus       257 hn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-  330 (409)
                      -...++++|++.....++.    +++.+.++.+ .++++.|+-|-.|.-.    ++|+   . +...+++--.=-  || 
T Consensus        47 k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~----~i~~---~-~i~~~I~p~KDV--DGl  116 (287)
T PRK14181         47 KVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPK----HLDA---Q-AILQAISPDKDV--DGL  116 (287)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCC----CcCH---H-HHHhccCcccCc--ccC
Confidence            3456889999988777754    3677777777 5678999999999752    2222   1 122222221100  11 


Q ss_pred             ------eEE-EE-----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhC----CCe
Q 015310          331 ------KLI-GY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSR----GAR  393 (409)
Q Consensus       331 ------~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~----G~~  393 (409)
                            +++ |.     -.--.|++.-|+..             +.+++||+++|+|-+. +||.++.-|.+.    ++.
T Consensus       117 ~p~n~g~l~~g~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~At  183 (287)
T PRK14181        117 HPVNMGKLLLGETDGFIPCTPAGIIELLKYY-------------EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNAT  183 (287)
T ss_pred             ChhhHHHHhcCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCE
Confidence                  111 21     01125666665542             3679999999999877 999999999988    678


Q ss_pred             EEEEeC
Q 015310          394 VVIFDI  399 (409)
Q Consensus       394 i~v~nR  399 (409)
                      |+++..
T Consensus       184 Vtvchs  189 (287)
T PRK14181        184 VTLLHS  189 (287)
T ss_pred             EEEeCC
Confidence            999874

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=93.91  E-value=0.3  Score=48.01  Aligned_cols=85  Identities=19%  Similarity=0.262  Sum_probs=59.3

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcC-CCEEEEEecC----------CCCCCC-hhHHHHHHhcCCCcEEEEeccCCCC
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEG-ADVVEIRLDC----------INNFQP-GKDLEIILTKKPLPVLIVYRPKWAG   77 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~-aD~vElRlD~----------l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eG   77 (409)
                      .| +.++|.+.+.+++.+.++++.+.| +|.||+=+=+          ..+.+. .+.++.+++..++|+.+-++..   
T Consensus        92 ~p-~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---  167 (301)
T PRK07259         92 TP-IIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN---  167 (301)
T ss_pred             Cc-EEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC---
Confidence            44 569999999999999999988888 9999995421          111100 1233344444589999888731   


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015310           78 GLYEGDEHKRLEALHLAEDLGADYVDF  104 (409)
Q Consensus        78 G~~~~~~~~~~~ll~~~~~~g~dyvDi  104 (409)
                            .++..++.+.+.+.|+|+|++
T Consensus       168 ------~~~~~~~a~~l~~~G~d~i~~  188 (301)
T PRK07259        168 ------VTDIVEIAKAAEEAGADGLSL  188 (301)
T ss_pred             ------chhHHHHHHHHHHcCCCEEEE
Confidence                  235667778888899999876

>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV

Probab=93.91  E-value=7.5  Score=39.50  Aligned_cols=195  Identities=13%  Similarity=0.073  Sum_probs=106.8

Q ss_pred             HHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeccCcc------chH---HHHHhccC---C
Q 015310           56 LEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKVAS------NIL---GKQYSSHQ---S  122 (409)
Q Consensus        56 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv-DiEl~~~~------~~~---~~l~~~~~---~  122 (409)
                      +.+++...+.|++.|.=. .++|   .+.++..++++..++.|+|.| |.|.....      +.+   .+.+....   +
T Consensus       121 ~R~~~gv~~rPli~Ti~k-p~~g---ld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG  196 (367)
T cd08205         121 LRRLLGVHDRPLLGTIIK-PSIG---LSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETG  196 (367)
T ss_pred             HHHHhCCCCCCeeeeeeC-CCCC---CCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhC
Confidence            334444458899999664 3455   478899999999999999987 77754432      111   22221111   2


Q ss_pred             CcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEE---------------EEE
Q 015310          123 GTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPII---------------AYS  187 (409)
Q Consensus       123 ~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i---------------~~~  187 (409)
                      +.++++..-    |-+.+|+.++.+.+++.|||.+=+.....-......+.+.   .+.|+.               .++
T Consensus       197 ~~~~y~~ni----t~~~~e~i~~a~~a~~~Gad~vmv~~~~~g~~~~~~l~~~---~~lpi~~H~a~~ga~~~~~~~g~~  269 (367)
T cd08205         197 RKTLYAPNI----TGDPDELRRRADRAVEAGANALLINPNLVGLDALRALAED---PDLPIMAHPAFAGALSRSPDYGSH  269 (367)
T ss_pred             CcceEEEEc----CCCHHHHHHHHHHHHHcCCCEEEEecccccccHHHHHHhc---CCCeEEEccCcccccccCCCCcCC
Confidence            333333322    3335899999999999999998888776665555444432   233433               333


Q ss_pred             cCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhh--ccccccceEEeeeccCCcccCCHHhHHHHHHhcC
Q 015310          188 VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV--EHINADTKVFGLISKPVGHSKGPILHNPTFRHVN  265 (409)
Q Consensus       188 MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~--~~i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~g  265 (409)
                      |=-+|++.|+.+-   +.+.|..... .-+  .+.+++.++.+.  ..+..-+..+-+.    +-...|......++.+|
T Consensus       270 ~~~~~kl~RlaGa---d~~~~~~~~g-k~~--~~~~~~~~la~~~~~~~~~iK~~~Pv~----sgG~~~~~v~~l~~~~G  339 (367)
T cd08205         270 FLLLGKLMRLAGA---DAVIFPGPGG-RFP--FSREECLAIARACRRPLGGIKPALPVP----SGGMHPGRVPELYRDYG  339 (367)
T ss_pred             HHHHHHHHHHcCC---CccccCCCcc-CcC--CCHHHHHHHHHHHhCccccCCCceeec----cCCCCHHHHHHHHHHhC
Confidence            3345667777643   2233332211 111  245555554432  1111111112111    11356666677777888


Q ss_pred             CCceEe
Q 015310          266 YNGIYV  271 (409)
Q Consensus       266 l~~~y~  271 (409)
                      -|..+.
T Consensus       340 ~dv~~~  345 (367)
T cd08205         340 PDVILL  345 (367)
T ss_pred             CcEEEE
Confidence            554443

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=93.90  E-value=0.084  Score=47.92  Aligned_cols=40  Identities=18%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+++|+|+|+|+|-+|--++..|.+.|.+|+++-|++.+
T Consensus       163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~  202 (203)
T PF13738_consen  163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW  202 (203)
T ss_dssp             GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred             hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence            3567899999999999999999999999999999998753

...

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.88  E-value=0.12  Score=40.18  Aligned_cols=32  Identities=25%  Similarity=0.254  Sum_probs=29.8

Q ss_pred             EEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +++|+|+|-.|--++..|.++|.+|+++.|..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence            58999999999999999999999999999874

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=93.71  E-value=4.7  Score=39.00  Aligned_cols=197  Identities=17%  Similarity=0.127  Sum_probs=116.2

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCC--------CCChhHHHHHHhcC--CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINN--------FQPGKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~--------~~~~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (409)
                      +.++.++-++.+.+.|.|.||.=.=.-.+        +.+.+.++++++..  +.++..-+|...      .+    .+.
T Consensus        18 ~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~----~~~   87 (266)
T cd07944          18 GDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN------DD----IDL   87 (266)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC------CC----HHH
Confidence            34555555556667899999987422111        11234566665432  678888887653      11    235


Q ss_pred             HHHHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CH
Q 015310           91 LHLAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DI  166 (409)
Q Consensus        91 l~~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~  166 (409)
                      ++.+.+.|++.|-|-.....  +..+-+..+++.+.++.++.=+...+ +.+.+.+.++++.+.|+|.+-++=+.-  ++
T Consensus        88 l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~-~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P  166 (266)
T cd07944          88 LEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGY-SDEELLELLELVNEIKPDVFYIVDSFGSMYP  166 (266)
T ss_pred             HHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCC-CHHHHHHHHHHHHhCCCCEEEEecCCCCCCH
Confidence            66777888998777654332  22222224556778888776663344 367899999999999999988874443  58


Q ss_pred             hHHHHHHHHhccC-C--CCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          167 TEIARIFQLLSHC-Q--VPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       167 ~D~~~ll~~~~~~-~--~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      +++.++.+.+.+. +  .|+=.     ++|+..-.+.   .-..|..+.-+++.. +-..|.++.+++...++.
T Consensus       167 ~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~la---A~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~  237 (266)
T cd07944         167 EDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLE---AIELGVEIIDATVYGMGRGAGNLPTELLLDYLNN  237 (266)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHH---HHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHH
Confidence            8888888876543 3  44421     1222222222   222343333333322 235788999888766643

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=93.68  E-value=0.44  Score=44.54  Aligned_cols=88  Identities=22%  Similarity=0.352  Sum_probs=60.3

Q ss_pred             eeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCC---------C---CCC---hhHHHHHHhcCCCcEEEEeccCC
Q 015310           11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCIN---------N---FQP---GKDLEIILTKKPLPVLIVYRPKW   75 (409)
Q Consensus        11 ~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~---------~---~~~---~~~l~~l~~~~~~PiI~T~R~~~   75 (409)
                      ..+.+.|.+.+.+++.+.++.+.+.|+|.||+-+-+-.         .   .++   .+.++.+++....|+.+-+|..+
T Consensus        55 ~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~  134 (231)
T cd02801          55 RPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW  134 (231)
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc
Confidence            33568999999999999999988889999999765411         0   011   13344454445678877777432


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015310           76 AGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (409)
Q Consensus        76 eGG~~~~~~~~~~~ll~~~~~~g~dyvDi  104 (409)
                      +     . +++..++.+.+.+.|+++|.|
T Consensus       135 ~-----~-~~~~~~~~~~l~~~Gvd~i~v  157 (231)
T cd02801         135 D-----D-EEETLELAKALEDAGASALTV  157 (231)
T ss_pred             C-----C-chHHHHHHHHHHHhCCCEEEE
Confidence            2     1 146677777888889999876

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=93.63  E-value=0.08  Score=48.91  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=31.9

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++++|+|+|+||.|..++..|...|+ +|++++.+
T Consensus        19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            456789999999999999999999999 89999865

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=93.62  E-value=1.6  Score=39.17  Aligned_cols=107  Identities=21%  Similarity=0.217  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHh---cCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT---KKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .++.+.++++.+.|+|.|++|.--.......+.+..+++   ..+.++++.               ++   ++.+.+.|+
T Consensus        12 ~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~---------------~~---~~~a~~~g~   73 (196)
T cd00564          12 EDLLEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGVPLIIN---------------DR---VDLALAVGA   73 (196)
T ss_pred             chHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe---------------Ch---HHHHHHcCC
Confidence            456667777778899999999753322111122333332   236677753               12   345678899


Q ss_pred             cEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310          100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus       100 dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      +.+-++.....  ...+...++.+.++-+|.|+    +  ++    ..++.+.|+|++.+
T Consensus        74 ~~vh~~~~~~~--~~~~~~~~~~~~~~g~~~~t----~--~~----~~~~~~~g~d~i~~  121 (196)
T cd00564          74 DGVHLGQDDLP--VAEARALLGPDLIIGVSTHS----L--EE----ALRAEELGADYVGF  121 (196)
T ss_pred             CEEecCcccCC--HHHHHHHcCCCCEEEeeCCC----H--HH----HHHHhhcCCCEEEE
Confidence            99988764322  12222333457788888873    2  23    34566779999976

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.49  E-value=0.66  Score=45.55  Aligned_cols=119  Identities=15%  Similarity=0.248  Sum_probs=74.7

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ...++++|++.....++-    +++.+.++.+ .++.+.|+-|-.|...    ++|+   . +.+.+++--.=-  ||  
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~----~i~~---~-~i~~~I~p~KDV--DGl~  122 (293)
T PRK14185         53 VKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPK----HISE---Q-KVIEAIDYRKDV--DGFH  122 (293)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CCCH---H-HHHhccCcccCc--CCCC
Confidence            457899999987766653    3566666667 5678999999999752    2221   1 112222211100  11  


Q ss_pred             -----eEE-EE----cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhC----CCeEE
Q 015310          331 -----KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSR----GARVV  395 (409)
Q Consensus       331 -----~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~----G~~i~  395 (409)
                           ++. |.    -.--.|++.-|+..             +.+++||+++|+|.+. +||.++.-|.+.    ++.|+
T Consensus       123 ~~N~g~l~~~~~~~~PcTp~av~~lL~~~-------------~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt  189 (293)
T PRK14185        123 PINVGRMSIGLPCFVSATPNGILELLKRY-------------HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT  189 (293)
T ss_pred             HhhHHHHhCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE
Confidence                 111 11    11225666665542             3678999999999877 999999999887    57899


Q ss_pred             EEeC
Q 015310          396 IFDI  399 (409)
Q Consensus       396 v~nR  399 (409)
                      ++..
T Consensus       190 vchs  193 (293)
T PRK14185        190 VCHS  193 (293)
T ss_pred             EecC
Confidence            8853

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=93.48  E-value=7.6  Score=37.38  Aligned_cols=38  Identities=16%  Similarity=0.189  Sum_probs=30.3

Q ss_pred             EeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC
Q 015310           15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP   52 (409)
Q Consensus        15 v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~   52 (409)
                      ++.-.++.+...+.++...+.|||++|+-+-+-++..+
T Consensus        16 ~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aD   53 (256)
T TIGR00262        16 VTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLAD   53 (256)
T ss_pred             EeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCc
Confidence            45567888888888888888999999999987665543

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=93.33  E-value=0.57  Score=46.89  Aligned_cols=119  Identities=14%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|++..-..++.    +++.+.++.+ .++.+.|+-|-.|...    ++|+   . +.+.+++--.=-  ||  
T Consensus       108 ~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~----hid~---~-~i~~~I~p~KDV--DGl~  177 (345)
T PLN02897        108 IKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQ----HLDE---S-KILNMVRLEKDV--DGFH  177 (345)
T ss_pred             HHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCcccCc--cCCC
Confidence            346789999987766654    3577777777 5678999999999852    2222   1 122222221100  12  


Q ss_pred             -----eE-EEEc------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310          331 -----KL-IGYN------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF  397 (409)
Q Consensus       331 -----~l-~G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~  397 (409)
                           ++ .|.+      .--.|++.-|+..             +.+++||+++|+|-+. +|+.++.-|.+.|+.|+++
T Consensus       178 p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~-------------~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTic  244 (345)
T PLN02897        178 PLNVGNLAMRGREPLFVSCTPKGCVELLIRS-------------GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTV  244 (345)
T ss_pred             HHHHHHHhcCCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEE
Confidence                 12 1111      1125666665432             3678999999999776 9999999999999998888


Q ss_pred             eC
Q 015310          398 DI  399 (409)
Q Consensus       398 nR  399 (409)
                      ..
T Consensus       245 Hs  246 (345)
T PLN02897        245 HA  246 (345)
T ss_pred             cC
Confidence            64

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=93.24  E-value=2.9  Score=42.58  Aligned_cols=193  Identities=16%  Similarity=0.167  Sum_probs=107.7

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC--hhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (409)
                      +.++.++-++...+.|+|.+|.=.   ....+  .+.+..+.+.. +..++.-.|..             .+-++.+++.
T Consensus        24 s~e~k~~ia~~L~~~GV~~IE~G~---p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~-------------~~di~~a~~~   87 (378)
T PRK11858         24 TNEEKLAIARMLDEIGVDQIEAGF---PAVSEDEKEAIKAIAKLGLNASILALNRAV-------------KSDIDASIDC   87 (378)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEeC---CCcChHHHHHHHHHHhcCCCeEEEEEcccC-------------HHHHHHHHhC
Confidence            345555556666678999999853   22222  23444554322 32233333321             1226677888


Q ss_pred             CCcEEEEeccCccc---------------hHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310           98 GADYVDFELKVASN---------------ILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF  161 (409)
Q Consensus        98 g~dyvDiEl~~~~~---------------~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~  161 (409)
                      |++.|.+=+...+.               ...+.+ .++..+.++.++.=|...++ .+.+.++++.+.+.|+|.+-++=
T Consensus        88 g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~-~~~l~~~~~~~~~~Ga~~I~l~D  166 (378)
T PRK11858         88 GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTD-LDFLIEFAKAAEEAGADRVRFCD  166 (378)
T ss_pred             CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCC-HHHHHHHHHHHHhCCCCEEEEec
Confidence            99999987765441               112222 35567788888866655554 67899999999999999988874


Q ss_pred             ecC--CHhHHHHHHHHhccC-CCCEEEEEcCccchh--hhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310          162 SVN--DITEIARIFQLLSHC-QVPIIAYSVGERGLV--SQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (409)
Q Consensus       162 ~~~--~~~D~~~ll~~~~~~-~~p~i~~~MG~~G~~--SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~  230 (409)
                      +.-  ++.++.++++.+.+. +.|+-.=+=-..|.-  .=+..-.-|....-+++.. +-..|+.+++++...++
T Consensus       167 T~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGeraGNa~lE~vv~~L~  241 (378)
T PRK11858        167 TVGILDPFTMYELVKELVEAVDIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGERAGNAALEEVVMALK  241 (378)
T ss_pred             cCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccccccCccHHHHHHHHH
Confidence            433  577887777765432 444332222222211  1111122333333233322 23467777777766554

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=93.24  E-value=1.6  Score=39.98  Aligned_cols=110  Identities=14%  Similarity=0.200  Sum_probs=65.3

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEec---CCCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLD---CINNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD---~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (409)
                      +|.++|..-+..++.+.++.+...|+|++++|+=   +...... .+.++.+++..+.|+.+.+-..        +..+ 
T Consensus         1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~--------d~~~-   71 (211)
T cd00429           1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVE--------NPER-   71 (211)
T ss_pred             CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeC--------CHHH-
Confidence            3667888899999999999999999999999852   1222111 1355666654456664444322        2223 


Q ss_pred             HHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccC
Q 015310           88 LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNL  132 (409)
Q Consensus        88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~  132 (409)
                        .++.+.+.|+|+|=|=....+.....+...++.+.+++++.|.
T Consensus        72 --~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~  114 (211)
T cd00429          72 --YIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNP  114 (211)
T ss_pred             --HHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecC
Confidence              3555668889985332222122222222334567888888863

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=93.22  E-value=0.094  Score=53.67  Aligned_cols=35  Identities=26%  Similarity=0.422  Sum_probs=31.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            346789999999999999999999999 99999876

>PRK13243 glyoxylate reductase; Reviewed

Probab=93.20  E-value=0.15  Score=50.98  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=36.1

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.||++.|+|.|.+|++++..|...|++|++++|+...
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~  185 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKP  185 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence            4578999999999999999999999999999999997543

>PLN02928 oxidoreductase family protein

Probab=93.19  E-value=0.14  Score=51.46  Aligned_cols=37  Identities=22%  Similarity=0.356  Sum_probs=34.5

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+.||++.|+|.|.+|++++..|..+|++|+.++|+.
T Consensus       156 ~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~  192 (347)
T PLN02928        156 TLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSW  192 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCC
Confidence            5789999999999999999999999999999999973

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.19  E-value=0.11  Score=56.79  Aligned_cols=35  Identities=29%  Similarity=0.342  Sum_probs=32.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++|+|||+|.+|.++++.|.++|.+|+|+.+..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~  360 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP  360 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            57899999999999999999999999999998863

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=93.17  E-value=0.81  Score=43.26  Aligned_cols=142  Identities=18%  Similarity=0.146  Sum_probs=82.9

Q ss_pred             eeEEEeeccC----CHHHH-----HHHHHHHHhcCCCEEEEEecC---CCCCCC--hhHHHHHHh---cCCCcEEEEecc
Q 015310           11 TMICAPLMAQ----SVEQV-----LSNMYQAKAEGADVVEIRLDC---INNFQP--GKDLEIILT---KKPLPVLIVYRP   73 (409)
Q Consensus        11 ~~icv~l~~~----~~~e~-----~~~~~~~~~~~aD~vElRlD~---l~~~~~--~~~l~~l~~---~~~~PiI~T~R~   73 (409)
                      +++|+.+.++    ..+.-     ..+++++.+.|||.|.+=+++   ..+...  .+++.++.+   ...+|+|+-.-.
T Consensus        55 ~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l  134 (236)
T PF01791_consen   55 VKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL  134 (236)
T ss_dssp             SEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE
T ss_pred             cccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            4677777665    34555     688999999999999999998   332211  133444443   457888877544


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecc-------CccchHHHHHhc--cCCCcEEEEeccCCCCCCCHhHHHH
Q 015310           74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDFELK-------VASNILGKQYSS--HQSGTRFIVSCNLDCETPSEEDLGY  144 (409)
Q Consensus        74 ~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~-------~~~~~~~~l~~~--~~~~~kiI~S~H~f~~tp~~~~l~~  144 (409)
                      ..+.-.-+..++.-....+.+.++|+|+|=.+.-       ...+.++++...  .+++++|++|     +-++.+++..
T Consensus       135 ~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~s-----GGi~~~~~~~  209 (236)
T PF01791_consen  135 RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKAS-----GGIDAEDFLR  209 (236)
T ss_dssp             CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEE-----SSSSHHHHHH
T ss_pred             CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEe-----CCCChHHHHH
Confidence            3221110112233455667788999999999887       223344444421  1256778888     3445566655


Q ss_pred             HHHHHH---HcCCCEE
Q 015310          145 LVSRMQ---ATGADII  157 (409)
Q Consensus       145 ~~~~~~---~~gaDiv  157 (409)
                      .++.+.   +.|||..
T Consensus       210 ~l~~a~~~i~aGa~~~  225 (236)
T PF01791_consen  210 TLEDALEFIEAGADRI  225 (236)
T ss_dssp             SHHHHHHHHHTTHSEE
T ss_pred             HHHHHHHHHHcCChhH
Confidence            555555   7887653

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=93.12  E-value=0.18  Score=51.82  Aligned_cols=41  Identities=29%  Similarity=0.467  Sum_probs=36.0

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~  216 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKIT  216 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            457899999997 88999999999999999999999876654

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=93.12  E-value=1.1  Score=45.85  Aligned_cols=133  Identities=17%  Similarity=0.143  Sum_probs=90.8

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHH
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR   87 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~   87 (409)
                      +.|+++|.|-.++.++.++-++++...+.+++|+=.-++..... +.++.+++. .+.|+.+.+....        ...+
T Consensus       171 ~~p~L~vALD~~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~-~iVk~Lr~~~~~~~I~~DLK~~D--------i~~~  241 (391)
T PRK13307        171 DPPYLQVALDLPDLEEVERVLSQLPKSDHIIIEAGTPLIKKFGL-EVISKIREVRPDAFIVADLKTLD--------TGNL  241 (391)
T ss_pred             ccceEEEecCCCCHHHHHHHHHhcccccceEEEECHHHHHHhCH-HHHHHHHHhCCCCeEEEEecccC--------hhhH
Confidence            46999999999999999988887644446888988888766543 356777765 5789999987642        2233


Q ss_pred             HHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEE-eccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIV-SCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~-S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      .  .+.+.+.|+|++-+=.....+.+.+.+ .+++.|.++++ ..|.  .||     .+.++.+ ..+.|++-+-
T Consensus       242 v--v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgVD~lnp--~tp-----~e~i~~l-~~~vD~Vllh  306 (391)
T PRK13307        242 E--ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNV--EDP-----VKLLESL-KVKPDVVELH  306 (391)
T ss_pred             H--HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEEcCC--CCH-----HHHHHHh-hCCCCEEEEc
Confidence            2  667788999999987766554444444 45667888888 6653  232     2233333 4577887655

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=93.12  E-value=0.35  Score=46.51  Aligned_cols=51  Identities=25%  Similarity=0.390  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEe
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFD  398 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~n  398 (409)
                      ++|...+++..+...         +.+++|++++|.|-|.+|+.++..|.++|++|+ |.+
T Consensus        18 g~Gv~~~~~~~~~~~---------~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD   69 (254)
T cd05313          18 GYGLVYFVEEMLKDR---------NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD   69 (254)
T ss_pred             HHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            577788887766532         257889999999999999999999999999765 766

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK06484 short chain dehydrogenase; Validated

Probab=93.11  E-value=0.17  Score=53.16  Aligned_cols=44  Identities=32%  Similarity=0.422  Sum_probs=38.4

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ...+|.++|.|+ ||.|++++..|.+.|++|++++|+.++.++++
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~  310 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLA  310 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            346899999995 88999999999999999999999988877653

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=93.11  E-value=0.1  Score=56.11  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=32.0

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++.+|+|+|+||.|..++..|+..|+ +|++++.+
T Consensus       336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D  371 (664)
T TIGR01381       336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG  371 (664)
T ss_pred             HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            457899999999999999999999999 99999864

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK14031 glutamate dehydrogenase; Provisional

Probab=93.10  E-value=0.3  Score=50.65  Aligned_cols=52  Identities=23%  Similarity=0.375  Sum_probs=42.6

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEE-Ee
Q 015310          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI-FD  398 (409)
Q Consensus       338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v-~n  398 (409)
                      -++|...+++..+.+.         +.+++|++|+|.|.|-+|..++..|.+.|++|+. .+
T Consensus       207 Tg~Gv~~~~~~~~~~~---------g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD  259 (444)
T PRK14031        207 TGYGNIYFLMEMLKTK---------GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD  259 (444)
T ss_pred             cHHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            3578888887776532         2578999999999999999999999999997665 44

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=93.08  E-value=1.6  Score=41.84  Aligned_cols=152  Identities=16%  Similarity=0.230  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccC-CCCCCCCCCHHHHHHHHHHHHHcC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPK-WAGGLYEGDEHKRLEALHLAEDLG   98 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~~~~g   98 (409)
                      .+.+++.+-++++.+.++|.|=+---++..      .... ...+.++++++=.. ..|..  .+........+.+++.|
T Consensus        33 ~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~------~~~~-~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~v~~al~~G  103 (258)
T TIGR01949        33 KGLVDIRKTVNEVAEGGADAVLLHKGIVRR------GHRG-YGKDVGLIIHLSASTSLSPD--PNDKRIVTTVEDAIRMG  103 (258)
T ss_pred             CCcCCHHHHHHHHHhcCCCEEEeCcchhhh------cccc-cCCCCcEEEEEcCCCCCCCC--CCcceeeeeHHHHHHCC
Confidence            355666666777777788888433222111      1111 12477877665111 11111  11223445678899999


Q ss_pred             CcEEEEeccCcc----chH---HHHHh-ccCCCcEEEEe-c----cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015310           99 ADYVDFELKVAS----NIL---GKQYS-SHQSGTRFIVS-C----NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND  165 (409)
Q Consensus        99 ~dyvDiEl~~~~----~~~---~~l~~-~~~~~~kiI~S-~----H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~  165 (409)
                      ++.||+..+...    +.+   +++.. .++.+..+|+- +    |...  .+.+++....+.+.+.|||++|.-..   
T Consensus       104 a~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~--~~~~~~~~~~~~a~~~GADyikt~~~---  178 (258)
T TIGR01949       104 ADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDD--RDPELVAHAARLGAELGADIVKTPYT---  178 (258)
T ss_pred             CCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCccccc--ccHHHHHHHHHHHHHHCCCEEeccCC---
Confidence            999999876321    222   33332 34567777662 2    2222  22345555567778899999997532   


Q ss_pred             HhHHHHHHHHhccCCCCEEEE
Q 015310          166 ITEIARIFQLLSHCQVPIIAY  186 (409)
Q Consensus       166 ~~D~~~ll~~~~~~~~p~i~~  186 (409)
                       .|...+-++......|++++
T Consensus       179 -~~~~~l~~~~~~~~iPVva~  198 (258)
T TIGR01949       179 -GDIDSFRDVVKGCPAPVVVA  198 (258)
T ss_pred             -CCHHHHHHHHHhCCCcEEEe
Confidence             23333333444456787664

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=93.07  E-value=0.61  Score=45.88  Aligned_cols=119  Identities=18%  Similarity=0.263  Sum_probs=75.9

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCC---
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSD---  329 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~---  329 (409)
                      .+..+++|++..-..++.    +++.+.++.+ .++++.|+-|-+|.-.    ++|+   . +.+.+++--.=-  |   
T Consensus        61 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~----~id~---~-~i~~~I~p~KDV--DGl~  130 (299)
T PLN02516         61 RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPK----HINE---E-KILNEISLEKDV--DGFH  130 (299)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCC----CcCH---H-HHHhccCccccc--CccC
Confidence            346889999987666642    4677777777 5678999999999742    2222   1 122222221100  1   


Q ss_pred             ----CeEE-EE-c-----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310          330 ----GKLI-GY-N-----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF  397 (409)
Q Consensus       330 ----g~l~-G~-N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~  397 (409)
                          |++. |. .     .--.|++.-|+..             +.+++||+++|+|-+. +||.++.-|.+.|+.|+++
T Consensus       131 ~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvc  197 (299)
T PLN02516        131 PLNIGKLAMKGREPLFLPCTPKGCLELLSRS-------------GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVV  197 (299)
T ss_pred             HhhHhhHhcCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEe
Confidence                1221 11 1     1124555555432             3689999999999877 9999999999999999998


Q ss_pred             eC
Q 015310          398 DI  399 (409)
Q Consensus       398 nR  399 (409)
                      ..
T Consensus       198 hs  199 (299)
T PLN02516        198 HS  199 (299)
T ss_pred             CC
Confidence            64

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=93.05  E-value=0.11  Score=59.12  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=33.0

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..||+|+|||+|.||.++|+.|.+.|.+|+|+.+..
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~  339 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH  339 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence            358999999999999999999999999999998763

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=92.95  E-value=0.6  Score=47.02  Aligned_cols=119  Identities=22%  Similarity=0.290  Sum_probs=75.9

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|++..-..++-    +++.+.++.+ .++.+.|+-|-+|...    ++|+   . +.+.+++--.=-  ||  
T Consensus       125 ~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~----~id~---~-~i~~aI~P~KDV--DGl~  194 (364)
T PLN02616        125 KKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPS----HMDE---Q-NILNAVSIEKDV--DGFH  194 (364)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCcccCc--ccCC
Confidence            356889999976555543    2577777777 4578999999999852    2222   1 122222221100  11  


Q ss_pred             -----eEE-EE-c-----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310          331 -----KLI-GY-N-----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF  397 (409)
Q Consensus       331 -----~l~-G~-N-----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~  397 (409)
                           ++. |. +     .--.|++.-|+..             +.+++||+|+|+|-+. +||.++.-|.+.|+.|+++
T Consensus       195 p~N~G~L~~g~~~~~f~PCTp~avielL~~y-------------~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTic  261 (364)
T PLN02616        195 PLNIGRLAMRGREPLFVPCTPKGCIELLHRY-------------NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIV  261 (364)
T ss_pred             hhhhHHHhcCCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEe
Confidence                 121 11 1     1125666666542             3678999999999766 9999999999999999888


Q ss_pred             eC
Q 015310          398 DI  399 (409)
Q Consensus       398 nR  399 (409)
                      ..
T Consensus       262 Hs  263 (364)
T PLN02616        262 HS  263 (364)
T ss_pred             CC
Confidence            64

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=92.91  E-value=0.13  Score=57.97  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=32.5

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..||+|+|+|+|.||-++|+.|++.|++|+|+++.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence            46899999999999999999999999999999864

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=92.90  E-value=7.7  Score=38.91  Aligned_cols=199  Identities=17%  Similarity=0.219  Sum_probs=111.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEE---------ecC-CCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIR---------LDC-INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElR---------lD~-l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      +.++.++-++.+.+.|+|.||.=         +++ +...++.+.++.++... +.++..-+++.    .  ..    .+
T Consensus        23 ~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg----~--~~----~~   92 (337)
T PRK08195         23 TLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPG----I--GT----VD   92 (337)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccC----c--cc----HH
Confidence            34555666666677899999993         221 12223345566665432 34444445431    1  11    23


Q ss_pred             HHHHHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015310           90 ALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--D  165 (409)
Q Consensus        90 ll~~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~  165 (409)
                      -++.+.+.|++.|-|-....+ +...+.+ .+++.+.++.++.=+. ...+.+++.++.+++.++|+|.+=++=+.-  +
T Consensus        93 dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~  171 (337)
T PRK08195         93 DLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALL  171 (337)
T ss_pred             HHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCC
Confidence            368888999999887655443 2223333 4556677776655442 233568899999999999999887774443  5


Q ss_pred             HhHHHHHHHHhccC---CCCEEEEE-cCc--cchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          166 ITEIARIFQLLSHC---QVPIIAYS-VGE--RGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       166 ~~D~~~ll~~~~~~---~~p~i~~~-MG~--~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      ++|+.++.+.+.+.   +.|+ .+- =-.  ++...=+..-.-|..+.=+++.. +...|..+++++...++.
T Consensus       172 P~~v~~~v~~l~~~l~~~i~i-g~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~~aGN~~tE~lv~~L~~  243 (337)
T PRK08195        172 PEDVRDRVRALRAALKPDTQV-GFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLDR  243 (337)
T ss_pred             HHHHHHHHHHHHHhcCCCCeE-EEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcccccCccHHHHHHHHHh
Confidence            88888888876543   3332 221 001  11112222222333333333322 345788888887766543

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=92.87  E-value=6.6  Score=36.86  Aligned_cols=199  Identities=18%  Similarity=0.245  Sum_probs=114.0

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +.++.+.-++...+.|.|.||+=.-...+ ++.+.++.+++.. +.++..-+|.         .++.=...++.+...|+
T Consensus        12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~g~   81 (237)
T PF00682_consen   12 STEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCRA---------NEEDIERAVEAAKEAGI   81 (237)
T ss_dssp             -HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEES---------CHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeeee---------hHHHHHHHHHhhHhccC
Confidence            34555555666667899999998333322 2234555554332 4555555553         23332233566677899


Q ss_pred             cEEEEeccCcc---------------chHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310          100 DYVDFELKVAS---------------NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus       100 dyvDiEl~~~~---------------~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      +.+.+-....+               +...+.+ .++..+.++-++.=+...++ .+++.+.++++.++|+|++-|+=+.
T Consensus        82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~i~l~Dt~  160 (237)
T PF00682_consen   82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTD-PEELLELAEALAEAGADIIYLADTV  160 (237)
T ss_dssp             SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSS-HHHHHHHHHHHHHHT-SEEEEEETT
T ss_pred             CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcccccccc-HHHHHHHHHHHHHcCCeEEEeeCcc
Confidence            99999877654               1122223 45667888877765544443 5789999999999999999888443


Q ss_pred             C--CHhHHHHHHHHhccC-C-CCEEEEEcCcc--chhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310          164 N--DITEIARIFQLLSHC-Q-VPIIAYSVGER--GLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (409)
Q Consensus       164 ~--~~~D~~~ll~~~~~~-~-~p~i~~~MG~~--G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~  230 (409)
                      -  ++.++..+++.+.+. + .|+-.=+=-..  +...=+..-..|..+.=+++.. +-.+|+.+++++...++
T Consensus       161 G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn~~le~lv~~L~  234 (237)
T PF00682_consen  161 GIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGNAPLEELVAALE  234 (237)
T ss_dssp             S-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB-BHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCCccHHHHHHHHh
Confidence            3  578888888776543 2 33321111111  2222222333344333233322 24589999999887665

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=92.85  E-value=4.4  Score=37.45  Aligned_cols=111  Identities=15%  Similarity=0.228  Sum_probs=65.9

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEe---cCCCCCC-ChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHH
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL---DCINNFQ-PGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEH   85 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl---D~l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~   85 (409)
                      +.+|.++|...+...+.++++.+.+.|+|+|++|+   .+.++.. ..+.++.+++..+.|+-+.+-..        +.+
T Consensus         3 ~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--------d~~   74 (220)
T PRK05581          3 MVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--------NPD   74 (220)
T ss_pred             CcEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--------CHH
Confidence            44688999999999999999999999999999986   2222211 13455566544444543333322        344


Q ss_pred             HHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEecc
Q 015310           86 KRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN  131 (409)
Q Consensus        86 ~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H  131 (409)
                      ++.+   .+.+.|+|+|=+=....+.....+...++.+.+++++.|
T Consensus        75 ~~i~---~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~  117 (220)
T PRK05581         75 RYVP---DFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLN  117 (220)
T ss_pred             HHHH---HHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEEC
Confidence            4443   445778888444332222222222233456777888775

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=92.85  E-value=1.3  Score=41.79  Aligned_cols=148  Identities=17%  Similarity=0.156  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHH-----HHHHHHHHHcC
Q 015310           24 QVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR-----LEALHLAEDLG   98 (409)
Q Consensus        24 e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~-----~~ll~~~~~~g   98 (409)
                      |+.+.++++.+.++|.|=+..-++.      .........+..+-+.++-  ..|..  .-+..     ..-.+.+++.|
T Consensus        20 ~~~~~~~~a~~~~~~av~v~p~~~~------~~~~~~~~~~~~~~~vi~f--p~g~~--~~~~k~~~~~~~~ve~A~~~G   89 (236)
T PF01791_consen   20 DIKKLCREAIEYGFDAVCVTPGYVK------PAAELLAGSGVKVGLVIGF--PFGTS--TTEPKGYDQIVAEVEEAIRLG   89 (236)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEGGGHH------HHHHHSTTSTSEEEEEEST--TTSSS--THHHHTCEEEHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhCCCEEEECHHHHH------HHHHHhhccccccceEEEe--CCCCC--ccccccccchHHHHHHHHHcC
Confidence            6777788888889998854433222      2222222222223333332  22322  23344     66678999999


Q ss_pred             CcEEEEeccC---cc-------chHHHHH-hccCCCcEEEEeccCCCCCC-----CHhHHHHHHHHHHHcCCCEEEEEee
Q 015310           99 ADYVDFELKV---AS-------NILGKQY-SSHQSGTRFIVSCNLDCETP-----SEEDLGYLVSRMQATGADIIKLVFS  162 (409)
Q Consensus        99 ~dyvDiEl~~---~~-------~~~~~l~-~~~~~~~kiI~S~H~f~~tp-----~~~~l~~~~~~~~~~gaDivKia~~  162 (409)
                      +|-||+=++.   ..       +.++++. ..++.+.++|+= -...+..     +.+.+....+-+.++|||++|..+.
T Consensus        90 Ad~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg  168 (236)
T PF01791_consen   90 ADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG  168 (236)
T ss_dssp             -SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S
T ss_pred             CceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC
Confidence            9999987666   21       2233444 456788898876 3211000     1123566667778899999999887


Q ss_pred             ---cCCHhHHHHHHHHhccCCCC
Q 015310          163 ---VNDITEIARIFQLLSHCQVP  182 (409)
Q Consensus       163 ---~~~~~D~~~ll~~~~~~~~p  182 (409)
                         ..+.+|+..+.++....+.|
T Consensus       169 ~~~~~t~~~~~~~~~~~~~~~~p  191 (236)
T PF01791_consen  169 KPVGATPEDVELMRKAVEAAPVP  191 (236)
T ss_dssp             SSSCSHHHHHHHHHHHHHTHSST
T ss_pred             ccccccHHHHHHHHHHHHhcCCC
Confidence               44567777777777766666

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK08324 short chain dehydrogenase; Validated

Probab=92.84  E-value=0.2  Score=55.04  Aligned_cols=43  Identities=42%  Similarity=0.607  Sum_probs=38.1

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+.||+++|.|+ ||.|++++..|.+.|++|++++|+.++.+.+
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~  462 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAA  462 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHH
Confidence            467899999995 9999999999999999999999998876654

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=92.83  E-value=4.1  Score=38.92  Aligned_cols=119  Identities=17%  Similarity=0.122  Sum_probs=75.2

Q ss_pred             HHHHhcCC-CcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCC
Q 015310           57 EIILTKKP-LPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE  135 (409)
Q Consensus        57 ~~l~~~~~-~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~  135 (409)
                      +.+++..+ .|+|+=.    +.|... ++++-.+..++.++.|++.|-||-..  +....+...+..+.-|| -+-+  -
T Consensus        65 ~~I~r~~~~~pviaD~----~~G~g~-~~~~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~~a~i~Vi-aRtd--~  134 (240)
T cd06556          65 RAVRRGAPLALIVADL----PFGAYG-APTAAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLTAAAVPVI-AHTG--L  134 (240)
T ss_pred             HHHHhhCCCCCEEEeC----CCCCCc-CHHHHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHHHcCCeEE-EEeC--C
Confidence            34445454 6999875    556554 55667777888899999999999763  22333333333345333 3223  2


Q ss_pred             CC-----------------CHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCc
Q 015310          136 TP-----------------SEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE  190 (409)
Q Consensus       136 tp-----------------~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~  190 (409)
                      +|                 ..++++++....++.|||.+=+=..  +.++..++   ....+.|++++++|.
T Consensus       135 ~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~--~~e~~~~i---~~~~~~P~~~~gag~  201 (240)
T cd06556         135 TPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV--PVELAKQI---TEALAIPLAGIGAGS  201 (240)
T ss_pred             chhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHH---HHhCCCCEEEEecCc
Confidence            22                 2456677777788899998877533  55555444   445678999998886

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=92.81  E-value=14  Score=38.70  Aligned_cols=207  Identities=15%  Similarity=0.131  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHhcCCCEEEE----EecC---CCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 015310           22 VEQVLSNMYQAKAEGADVVEI----RLDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (409)
Q Consensus        22 ~~e~~~~~~~~~~~~aD~vEl----RlD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (409)
                      .++++.-+...-+.|.+.+|.    ..|-   +...+|.+.+..+++.. +.|+-.-+|..+==|..+.+++-...+++.
T Consensus        34 t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~  113 (468)
T PRK12581         34 IEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISL  113 (468)
T ss_pred             HHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHH
Confidence            466666666666779999999    8882   22335566777777654 677777778444345555566666677999


Q ss_pred             HHHcCCcEEEEeccC--ccchHHHHHhccCCCcE--EEEeccCCCCCC--CHhHHHHHHHHHHHcCCCEEEEEeecC--C
Q 015310           94 AEDLGADYVDFELKV--ASNILGKQYSSHQSGTR--FIVSCNLDCETP--SEEDLGYLVSRMQATGADIIKLVFSVN--D  165 (409)
Q Consensus        94 ~~~~g~dyvDiEl~~--~~~~~~~l~~~~~~~~k--iI~S~H~f~~tp--~~~~l~~~~~~~~~~gaDivKia~~~~--~  165 (409)
                      +.+.|+|.+=|=-..  .+.....+..+++.|..  +-+||-.   .|  +.+-+.+..+++.+.|||.+=|+=|.-  +
T Consensus       114 a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~---sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~  190 (468)
T PRK12581        114 SAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTT---SPVHTLNYYLSLVKELVEMGADSICIKDMAGILT  190 (468)
T ss_pred             HHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEe---CCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcC
Confidence            999998876652222  22222222233444444  4455432   45  456688999999999999988886655  5


Q ss_pred             HhHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          166 ITEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       166 ~~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      +.++.++.+.+.+. +.|+-.=  +.--++..+=+..-.-|....-+++.. +.-.||++.+++...++.
T Consensus       191 P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~  260 (468)
T PRK12581        191 PKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKE  260 (468)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHh
Confidence            78888888776543 4553211  222233333333333444333333332 122479999998877764

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=92.79  E-value=1.7  Score=41.98  Aligned_cols=153  Identities=16%  Similarity=0.193  Sum_probs=82.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHh--cCCCcEEEEeccC-CCCCCCCCCHHHHHHHHHHHHH
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT--KKPLPVLIVYRPK-WAGGLYEGDEHKRLEALHLAED   96 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~-~eGG~~~~~~~~~~~ll~~~~~   96 (409)
                      .+.+++.+-++++.+.++|.|=+---         .+....+  ..+.|+++++=+. .-|.  .+..+....-.+.+++
T Consensus        36 ~~~~d~~~~~~~a~~~~~~av~v~~~---------~~~~~~~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~ve~A~~  104 (267)
T PRK07226         36 DGLVDIRDTVNKVAEGGADAVLMHKG---------LARHGHRGYGRDVGLIVHLSASTSLSP--DPNDKVLVGTVEEAIK  104 (267)
T ss_pred             cCcCCHHHHHHHHHhcCCCEEEeCHh---------HHhhhccccCCCCcEEEEEcCCCCCCC--CCCcceeeecHHHHHH
Confidence            34566666677777778888833211         1222111  2467777765411 1110  1111445555778999


Q ss_pred             cCCcEEEEeccCcc----c---hHHHHH-hccCCCcEEEEe-ccC---CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310           97 LGADYVDFELKVAS----N---ILGKQY-SSHQSGTRFIVS-CNL---DCETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus        97 ~g~dyvDiEl~~~~----~---~~~~l~-~~~~~~~kiI~S-~H~---f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                      .|++.||+=++...    +   .++++. ..++.+..+|+- |-+   .+..-+.+++....+.+.+.|||++|.-... 
T Consensus       105 ~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~-  183 (267)
T PRK07226        105 LGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTG-  183 (267)
T ss_pred             cCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCC-
Confidence            99999998655422    1   223333 234566776663 221   1222233556666778888999999997432 


Q ss_pred             CHhHHHHHHHHhccCCCCEEEEE
Q 015310          165 DITEIARIFQLLSHCQVPIIAYS  187 (409)
Q Consensus       165 ~~~D~~~ll~~~~~~~~p~i~~~  187 (409)
                         |...+-+.......|+.+.+
T Consensus       184 ---~~~~l~~~~~~~~ipV~a~G  203 (267)
T PRK07226        184 ---DPESFREVVEGCPVPVVIAG  203 (267)
T ss_pred             ---CHHHHHHHHHhCCCCEEEEe
Confidence               33223333333467775543

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=92.78  E-value=0.77  Score=44.88  Aligned_cols=144  Identities=13%  Similarity=0.211  Sum_probs=84.5

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCC----CCCCChhHHHHHH-------hcCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCI----NNFQPGKDLEIIL-------TKKPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l----~~~~~~~~l~~l~-------~~~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      +.+++++++++..+.|||+|.+=--.-    +..+..+++.++.       +..+.|  +.+            +..+-+
T Consensus        36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~--ISI------------DT~~~~  101 (282)
T PRK11613         36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVW--ISV------------DTSKPE  101 (282)
T ss_pred             CHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe--EEE------------ECCCHH
Confidence            568889999999999999997763222    1122234444432       122333  233            235567


Q ss_pred             HHHHHHHcCCcEE-EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCH---------------hHHHHHHHHHHHcC
Q 015310           90 ALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE---------------EDLGYLVSRMQATG  153 (409)
Q Consensus        90 ll~~~~~~g~dyv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~---------------~~l~~~~~~~~~~g  153 (409)
                      ..+.|++.|+++| ||--...++.++.+   .+.+..+|+-+.  .++|..               +.+.+.++.+.+.|
T Consensus       102 va~~AL~~GadiINDI~g~~d~~~~~~~---a~~~~~vVlmh~--~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~G  176 (282)
T PRK11613        102 VIRESAKAGAHIINDIRSLSEPGALEAA---AETGLPVCLMHM--QGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAG  176 (282)
T ss_pred             HHHHHHHcCCCEEEECCCCCCHHHHHHH---HHcCCCEEEEcC--CCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence            8899999999998 66322223333322   235677777743  333421               23456677788888


Q ss_pred             CCEEEEEe-----ecCCHhHHHHHHHHhcc---CCCCE
Q 015310          154 ADIIKLVF-----SVNDITEIARIFQLLSH---CQVPI  183 (409)
Q Consensus       154 aDivKia~-----~~~~~~D~~~ll~~~~~---~~~p~  183 (409)
                      -+==+|+.     ..++.++++.+++-+..   .+.|+
T Consensus       177 I~~~~IilDPGiGF~k~~~~n~~ll~~l~~l~~lg~Pi  214 (282)
T PRK11613        177 IAKEKLLLDPGFGFGKNLSHNYQLLARLAEFHHFNLPL  214 (282)
T ss_pred             CChhhEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCE
Confidence            53224443     45678888888877543   35674

>PRK07201 short chain dehydrogenase; Provisional

Probab=92.75  E-value=0.21  Score=54.11  Aligned_cols=43  Identities=35%  Similarity=0.505  Sum_probs=38.5

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~  411 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDEL  411 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            567899999996 8899999999999999999999998887665

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=92.74  E-value=0.2  Score=50.05  Aligned_cols=40  Identities=23%  Similarity=0.282  Sum_probs=36.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|+.++|+.++
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~  181 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNK  181 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhH
Confidence            3578999999999999999999999999999999998754

>PRK07411 hypothetical protein; Validated

Probab=92.73  E-value=0.12  Score=52.78  Aligned_cols=35  Identities=31%  Similarity=0.497  Sum_probs=31.9

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      ++..+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            446789999999999999999999999 99999876

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=92.71  E-value=4.3  Score=40.39  Aligned_cols=88  Identities=18%  Similarity=0.329  Sum_probs=61.8

Q ss_pred             EEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC----C--------CC---hhHHHHHHhcCCCcEEEEeccCCCC
Q 015310           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN----F--------QP---GKDLEIILTKKPLPVLIVYRPKWAG   77 (409)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~--------~~---~~~l~~l~~~~~~PiI~T~R~~~eG   77 (409)
                      +.+.|.+.+.+++.+.++.+.+.|+|.||+=+-+=..    .        ++   .+.+..+++..+.|+.+-+|.    
T Consensus        67 ~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~----  142 (321)
T PRK10415         67 RTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRT----  142 (321)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEc----
Confidence            4589999999999888887777899999998876210    0        11   122333444568898888884    


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           78 GLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        78 G~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      | |..+.++..++.+.+.+.|+++|.|.
T Consensus       143 G-~~~~~~~~~~~a~~le~~G~d~i~vh  169 (321)
T PRK10415        143 G-WAPEHRNCVEIAQLAEDCGIQALTIH  169 (321)
T ss_pred             c-ccCCcchHHHHHHHHHHhCCCEEEEe
Confidence            3 22344567788888888999999874

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=92.64  E-value=2.5  Score=40.61  Aligned_cols=139  Identities=19%  Similarity=0.210  Sum_probs=83.8

Q ss_pred             CeeEEEee--ccCC-----HHHHHHHHHHHHhcCCCEEEEEecCCCCCCChh---HHHHHH---hcCCCcEEEEeccCCC
Q 015310           10 TTMICAPL--MAQS-----VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIIL---TKKPLPVLIVYRPKWA   76 (409)
Q Consensus        10 ~~~icv~l--~~~~-----~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~---~l~~l~---~~~~~PiI~T~R~~~e   76 (409)
                      .+.+|+++  .++.     ......+++++...|+|.|-+|...... ...+   .+.++.   +..+.|+++-.-  ..
T Consensus        70 ~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~-~~~~~~~~~~~i~~~~~~~g~~liv~~~--~~  146 (258)
T TIGR01949        70 DVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSD-TEWEQIRDLGMIAEICDDWGVPLLAMMY--PR  146 (258)
T ss_pred             CCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCc-hHHHHHHHHHHHHHHHHHcCCCEEEEEe--cc
Confidence            45578888  3222     1235566888889999999999875542 1112   233333   345789887322  33


Q ss_pred             CCCCC-CCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015310           77 GGLYE-GDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGAD  155 (409)
Q Consensus        77 GG~~~-~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaD  155 (409)
                      |.... .+.+...+..+.+.+.|+|||=+.+....+.++++...  ...+|+++=-  -++.+.++..+.+.++.+.||+
T Consensus       147 Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~~~~~~l~~~~~~--~~iPVva~GG--i~~~~~~~~~~~i~~~~~aGa~  222 (258)
T TIGR01949       147 GPHIDDRDPELVAHAARLGAELGADIVKTPYTGDIDSFRDVVKG--CPAPVVVAGG--PKTNSDREFLQMIKDAMEAGAA  222 (258)
T ss_pred             CcccccccHHHHHHHHHHHHHHCCCEEeccCCCCHHHHHHHHHh--CCCcEEEecC--CCCCCHHHHHHHHHHHHHcCCc
Confidence            43221 23344444457778899999998865444556655532  3455655522  1233567888889988999998

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=92.62  E-value=7.6  Score=37.52  Aligned_cols=194  Identities=14%  Similarity=0.118  Sum_probs=110.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC--hhHHHHHHhcCCCcEEEEe-ccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKKPLPVLIVY-RPKWAGGLYEGDEHKRLEALHLAEDL   97 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~~~~~~PiI~T~-R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (409)
                      +.++.++-++.+.+.|.|.||.=-   +...+  .+.++.+.+....+-++++ |..         .+    -++.+.+.
T Consensus        20 s~~~k~~i~~~L~~~Gv~~IEvG~---P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~---------~~----di~~a~~~   83 (262)
T cd07948          20 DTEDKIEIAKALDAFGVDYIELTS---PAASPQSRADCEAIAKLGLKAKILTHIRCH---------MD----DARIAVET   83 (262)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEC---CCCCHHHHHHHHHHHhCCCCCcEEEEecCC---------HH----HHHHHHHc
Confidence            345555556666778999999863   22222  2233333332222444443 422         11    25667788


Q ss_pred             CCcEEEEeccCcc------------chHHH---HH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310           98 GADYVDFELKVAS------------NILGK---QY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF  161 (409)
Q Consensus        98 g~dyvDiEl~~~~------------~~~~~---l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~  161 (409)
                      |++.|.+-+..++            +.++.   .+ .++..+.++-++.=+-.++| .+++.+++++..+.|+|.+-++=
T Consensus        84 g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~l~D  162 (262)
T cd07948          84 GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSD-LVDLLRVYRAVDKLGVNRVGIAD  162 (262)
T ss_pred             CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEECC
Confidence            9999998664332            22222   22 34567788888876655666 57899999999999999877764


Q ss_pred             ecC--CHhHHHHHHHHhccC-CCCEEEEE--cCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          162 SVN--DITEIARIFQLLSHC-QVPIIAYS--VGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       162 ~~~--~~~D~~~ll~~~~~~-~~p~i~~~--MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      +.-  ++.++.++++.+.+. +.|+-.=+  .--+|...=+..-..|..+.=+++.. +--.|..+++++...++.
T Consensus       163 t~G~~~P~~v~~~~~~~~~~~~~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGeraGn~~~e~~~~~l~~  238 (262)
T cd07948         163 TVGIATPRQVYELVRTLRGVVSCDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGERNGITPLGGLIARMYT  238 (262)
T ss_pred             cCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccccccCCccHHHHHHHHHh
Confidence            433  578888887776543 44442211  11122222222223343333233322 244788899888877653

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>PRK05855 short chain dehydrogenase; Validated

Probab=92.60  E-value=0.23  Score=52.51  Aligned_cols=43  Identities=37%  Similarity=0.567  Sum_probs=38.0

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..++++++|+|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus       312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~  355 (582)
T PRK05855        312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERT  355 (582)
T ss_pred             cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            456789999996 8999999999999999999999998887665

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=92.53  E-value=0.55  Score=48.78  Aligned_cols=55  Identities=20%  Similarity=0.299  Sum_probs=45.3

Q ss_pred             CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEeCC
Q 015310          337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID  400 (409)
Q Consensus       337 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~nR~  400 (409)
                      --++|.+..++..+...         +.+++|++|+|-|.|-+|..++..|.++|++|+ |.+.+
T Consensus       215 ATG~Gv~~~~~~~l~~~---------~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        215 ATGYGLVYFVLEVLKKL---------NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             ccHHHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            35678888888776532         256899999999999999999999999999755 88776

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=92.53  E-value=0.26  Score=54.13  Aligned_cols=44  Identities=34%  Similarity=0.536  Sum_probs=38.5

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .++++|++||.|+ ||.|++++..|.+.|++|++++|+.++++.+
T Consensus       410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~  454 (676)
T TIGR02632       410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAV  454 (676)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            4577899999996 8899999999999999999999998776554

>PLN02591 tryptophan synthase

Probab=92.52  E-value=10  Score=36.38  Aligned_cols=170  Identities=14%  Similarity=0.187  Sum_probs=90.4

Q ss_pred             EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHHhcCCCc-EEEEe
Q 015310           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTKKPLP-VLIVY   71 (409)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~~~~~~P-iI~T~   71 (409)
                      -++.-.++.+..++.++...+.|||++|+-+-+-+...+.                     +.++++|+..+.| ++.|+
T Consensus         7 yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y   86 (250)
T PLN02591          7 YITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTY   86 (250)
T ss_pred             EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEec
Confidence            3566778999998888888889999999999876654331                     2334445446788 56666


Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE---EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHH
Q 015310           72 RPKWAGGLYEGDEHKRLEALHLAEDLGADYV---DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSR  148 (409)
Q Consensus        72 R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv---DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~  148 (409)
                      -+.-    +.   --.-++++.+.+.|++-+   |+-++..+++.+   ..++.+...|.=.   ..|.+.+.+..+.+.
T Consensus        87 ~N~i----~~---~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~---~~~~~gl~~I~lv---~Ptt~~~ri~~ia~~  153 (250)
T PLN02591         87 YNPI----LK---RGIDKFMATIKEAGVHGLVVPDLPLEETEALRA---EAAKNGIELVLLT---TPTTPTERMKAIAEA  153 (250)
T ss_pred             ccHH----HH---hHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH---HHHHcCCeEEEEe---CCCCCHHHHHHHHHh
Confidence            4321    11   122356778888887654   443322222222   2344566655422   122223334444444


Q ss_pred             HHHcCCCEEEEEeecCC------HhHHHHHHHHhcc-CCCCEEEEEcCcc--chhhhhhcC
Q 015310          149 MQATGADIIKLVFSVND------ITEIARIFQLLSH-CQVPIIAYSVGER--GLVSQLLSP  200 (409)
Q Consensus       149 ~~~~gaDivKia~~~~~------~~D~~~ll~~~~~-~~~p~i~~~MG~~--G~~SRi~~~  200 (409)
                      .  .| -|+=+..+..+      ..+....++..++ .+.|++. +-|-.  -.+.+++..
T Consensus       154 ~--~g-FIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v-GFGI~~~e~v~~~~~~  210 (250)
T PLN02591        154 S--EG-FVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAV-GFGISKPEHAKQIAGW  210 (250)
T ss_pred             C--CC-cEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEE-eCCCCCHHHHHHHHhc
Confidence            2  22 34433333222      3445554444443 4778653 44443  345555433

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=92.50  E-value=0.56  Score=46.13  Aligned_cols=123  Identities=19%  Similarity=0.267  Sum_probs=78.0

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      .+.++++|++.....++.    +++.+.++.+ .++.+.|+-|-.|...    ++|+   .. .+.+++--.=-  ||  
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~----~id~---~~-i~~~I~p~KDV--DGl~  122 (295)
T PRK14174         53 AKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPK----QIDE---FA-VTLAIDPAKDV--DGFH  122 (295)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---HH-HHhcCCccccc--cccC
Confidence            456899999998887764    3677777777 5678999999999852    3322   11 11222221100  11  


Q ss_pred             -----eE-EEE--c----CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHh----CCCe
Q 015310          331 -----KL-IGY--N----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKS----RGAR  393 (409)
Q Consensus       331 -----~l-~G~--N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~----~G~~  393 (409)
                           ++ .|+  +    .--.|++.-|+..             +.+++||+|+|+|.+. +||.++.-|.+    .|+.
T Consensus       123 ~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y-------------~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~at  189 (295)
T PRK14174        123 PENLGRLVMGHLDKCFVSCTPYGILELLGRY-------------NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCT  189 (295)
T ss_pred             hhhHHHHhcCCCCCCcCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCE
Confidence                 11 121  1    1124555555432             3678999999999877 99999988887    5778


Q ss_pred             EEEEeCChHH
Q 015310          394 VVIFDIDFEQ  403 (409)
Q Consensus       394 i~v~nR~~~k  403 (409)
                      |+++..+...
T Consensus       190 Vt~~hs~t~~  199 (295)
T PRK14174        190 VTICHSATKD  199 (295)
T ss_pred             EEEEeCCchh
Confidence            8888765443

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.49  E-value=0.3  Score=40.34  Aligned_cols=38  Identities=37%  Similarity=0.417  Sum_probs=33.0

Q ss_pred             EEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          371 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       371 vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ++|+|.|..|+.++..|.+.+.+++++++++++.+.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~   38 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELR   38 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH
Confidence            68999999999999999996669999999999887763

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=92.45  E-value=0.24  Score=49.49  Aligned_cols=40  Identities=33%  Similarity=0.418  Sum_probs=36.2

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|++++|.|+||.|..++..+..+|++|+.++|+.+|.+.
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~  205 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLEL  205 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHH
Confidence            4889999999999999998888899999999999988743

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=92.27  E-value=7.9  Score=39.19  Aligned_cols=193  Identities=17%  Similarity=0.190  Sum_probs=110.2

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +.++.++-++...+.|+|.+|.=.-... ..+.+.++.+.+.. +..+..-.|..         .    +-++.+.+.|+
T Consensus        20 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~-~~~~e~i~~i~~~~~~~~v~~~~r~~---------~----~di~~a~~~g~   85 (363)
T TIGR02090        20 TVEQKVEIARKLDELGVDVIEAGFPIAS-EGEFEAIKKISQEGLNAEICSLARAL---------K----KDIDKAIDCGV   85 (363)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCCCC-hHHHHHHHHHHhcCCCcEEEEEcccC---------H----HHHHHHHHcCc
Confidence            3445555555666779999997421111 11223444454333 33444444532         1    22667888999


Q ss_pred             cEEEEeccCccc------------hHH---HHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310          100 DYVDFELKVASN------------ILG---KQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus       100 dyvDiEl~~~~~------------~~~---~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      +.|.+-+...+.            .++   +.+ .+++.+.++-++.=|...++ .+.+.++++++.+.|+|.+-++=+.
T Consensus        86 ~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~-~~~l~~~~~~~~~~g~~~i~l~DT~  164 (363)
T TIGR02090        86 DSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTD-IDFLIKVFKRAEEAGADRINIADTV  164 (363)
T ss_pred             CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCC-HHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            998885554321            122   222 35667888888876655553 6789999999999999998887654


Q ss_pred             C--CHhHHHHHHHHhccC-CCCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          164 N--DITEIARIFQLLSHC-QVPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       164 ~--~~~D~~~ll~~~~~~-~~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      -  ++.++.++.+.+.+. +.|+=.     ++|+..-.+.=+   .-|....=+++.. +-..|+.+++++...++.
T Consensus       165 G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~---~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~~  238 (363)
T TIGR02090       165 GVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGV---KAGAEQVHVTVNGIGERAGNAALEEVVMALKY  238 (363)
T ss_pred             CccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHH---HCCCCEEEEEeeccccccccccHHHHHHHHHH
Confidence            3  477888777776432 334321     122222222222   2233333333322 246899999988776653

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.22  E-value=0.28  Score=51.84  Aligned_cols=40  Identities=35%  Similarity=0.248  Sum_probs=35.9

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .+.+++|+|+|.+|++++..+..+|+.|++++++.++.+.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~  202 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQ  202 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3579999999999999999999999999999999877554

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=92.17  E-value=0.17  Score=57.53  Aligned_cols=34  Identities=24%  Similarity=0.395  Sum_probs=31.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .+++|+|||+|.||.++|+.|++.|.+|+|+.+.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~  569 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKK  569 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4689999999999999999999999999999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07985 oxidoreductase; Provisional

Probab=92.13  E-value=0.27  Score=47.89  Aligned_cols=36  Identities=33%  Similarity=0.445  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++..|+
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~   82 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLP   82 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCC
Confidence            367899999996 889999999999999998888765

>PLN02334 ribulose-phosphate 3-epimerase

Probab=92.12  E-value=9.7  Score=35.76  Aligned_cols=137  Identities=12%  Similarity=0.113  Sum_probs=80.2

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCC-C---hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCH
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQ-P---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDE   84 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~-~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~   84 (409)
                      +.-.|..++...+...+.++++++...|+|++=+|+--..... .   .+.++.+++.++.|+-+++-..        ++
T Consensus         6 ~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~--------~p   77 (229)
T PLN02334          6 NDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVT--------NP   77 (229)
T ss_pred             CCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccC--------CH
Confidence            3445777877777778888899988889999999765332111 1   1356666665666755565432        35


Q ss_pred             HHHHHHHHHHHHcCCcEE--EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcC-CCEE-EEE
Q 015310           85 HKRLEALHLAEDLGADYV--DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATG-ADII-KLV  160 (409)
Q Consensus        85 ~~~~~ll~~~~~~g~dyv--DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~g-aDiv-Kia  160 (409)
                      +.|++.   +.+.|+|+|  =+|....+...+.+...++.+.++-+|.|.  .||     .+.++...+.| +|.+ =..
T Consensus        78 ~d~~~~---~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~--~t~-----~~~~~~~~~~~~~Dyi~~~~  147 (229)
T PLN02334         78 EDYVPD---FAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNP--GTP-----VEAVEPVVEKGLVDMVLVMS  147 (229)
T ss_pred             HHHHHH---HHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECC--CCC-----HHHHHHHHhccCCCEEEEEE
Confidence            566654   477899999  666201111222232334567889899873  244     12233344443 7764 234


Q ss_pred             eec
Q 015310          161 FSV  163 (409)
Q Consensus       161 ~~~  163 (409)
                      +.|
T Consensus       148 v~p  150 (229)
T PLN02334        148 VEP  150 (229)
T ss_pred             Eec
Confidence            444

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=92.10  E-value=0.19  Score=57.16  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=32.4

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..+|+|+|||+|.+|.++|+.|++.|.+|+|+.+.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~  571 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFERE  571 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecc
Confidence            45789999999999999999999999999999875

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=92.09  E-value=0.2  Score=53.74  Aligned_cols=35  Identities=29%  Similarity=0.491  Sum_probs=32.1

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..|++|+|+|+|.+|.++++.|.++|++|+|+++.
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~  169 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG  169 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            45899999999999999999999999999999864

>PRK06046 alanine dehydrogenase; Validated

Probab=92.07  E-value=0.26  Score=49.11  Aligned_cols=41  Identities=15%  Similarity=0.247  Sum_probs=35.8

Q ss_pred             CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la  408 (409)
                      -+++.|+|+|+.|+..+.++... ++ +|+|++|+.+++++++
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~  171 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFV  171 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHH
Confidence            46899999999999999998754 67 8999999999988765

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=92.04  E-value=10  Score=35.17  Aligned_cols=109  Identities=24%  Similarity=0.245  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhcCCCEEEEEecCCCCC--CChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015310           25 VLSNMYQAKAEGADVVEIRLDCINNF--QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV  102 (409)
Q Consensus        25 ~~~~~~~~~~~~aD~vElRlD~l~~~--~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv  102 (409)
                      ..+.++.+.+.|||++  |+--++..  ...+.+..+++..++|+++-      |+-  .+++    .++.+.+.|+|.|
T Consensus        33 ~~~~A~~~~~~GA~~l--~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~------~~i--~~~~----~v~~~~~~Gad~v   98 (217)
T cd00331          33 PVEIAKAYEKAGAAAI--SVLTEPKYFQGSLEDLRAVREAVSLPVLRK------DFI--IDPY----QIYEARAAGADAV   98 (217)
T ss_pred             HHHHHHHHHHcCCCEE--EEEeCccccCCCHHHHHHHHHhcCCCEEEC------Cee--cCHH----HHHHHHHcCCCEE
Confidence            5555667777899999  43211211  12345666766678999951      221  2222    3667788999987


Q ss_pred             EEeccCcc-chHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015310          103 DFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (409)
Q Consensus       103 DiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDiv  157 (409)
                      =+-....+ +.++++. ..+.-+..+++..|+      +++    ++++.++|+|++
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~------~~e----~~~~~~~g~~~i  145 (217)
T cd00331          99 LLIVAALDDEQLKELYELARELGMEVLVEVHD------EEE----LERALALGAKII  145 (217)
T ss_pred             EEeeccCCHHHHHHHHHHHHHcCCeEEEEECC------HHH----HHHHHHcCCCEE
Confidence            54322211 3344444 234467888888884      344    455666788887

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=92.02  E-value=3.6  Score=39.96  Aligned_cols=89  Identities=15%  Similarity=0.184  Sum_probs=56.5

Q ss_pred             CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCcc-----------chHHHHHh-ccCC-CcEEEEe
Q 015310           63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS-----------NILGKQYS-SHQS-GTRFIVS  129 (409)
Q Consensus        63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~-----------~~~~~l~~-~~~~-~~kiI~S  129 (409)
                      .+.|+|+.++..        +.+++.+..+.+.+.|+|+|+|-+.++.           +.+.+++. .++. +..+++=
T Consensus        97 ~~~pvi~si~g~--------~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vK  168 (289)
T cd02810          97 PGQPLIASVGGS--------SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVK  168 (289)
T ss_pred             CCCeEEEEeccC--------CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEE
Confidence            478999998743        5678888999998999999999887653           12233332 2211 2222221


Q ss_pred             ccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015310          130 CNLDCETPSEEDLGYLVSRMQATGADIIKLVFS  162 (409)
Q Consensus       130 ~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~  162 (409)
                      .=   ...+.+++.++.+.+.+.|+|.+.+...
T Consensus       169 l~---~~~~~~~~~~~a~~l~~~Gad~i~~~~~  198 (289)
T cd02810         169 LS---PYFDLEDIVELAKAAERAGADGLTAINT  198 (289)
T ss_pred             eC---CCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            10   1123457888888888888888877543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.94  E-value=1.5  Score=43.26  Aligned_cols=119  Identities=20%  Similarity=0.310  Sum_probs=74.5

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|+......++-    +++.+.++.+ .++.+.|+-|-+|.-.    ++|+   . +.+.+++--.=-  ||  
T Consensus        55 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~----~i~~---~-~i~~~I~p~KDV--DGl~  124 (297)
T PRK14168         55 IKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPK----HINE---K-KVLNAIDPDKDV--DGFH  124 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCC----CCCH---H-HHHhccCccccc--cccC
Confidence            456889999987665542    4677777777 5678999999999742    2221   1 111122211100  11  


Q ss_pred             -----eE-EEEc------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhC----CCe
Q 015310          331 -----KL-IGYN------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSR----GAR  393 (409)
Q Consensus       331 -----~l-~G~N------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~----G~~  393 (409)
                           ++ .|.+      .--.|++.-|+..             +.+++||+++|+|.+. +||.++.-|.+.    ++.
T Consensus       125 ~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~-------------~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~at  191 (297)
T PRK14168        125 PVNVGRLMIGGDEVKFLPCTPAGIQEMLVRS-------------GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANAT  191 (297)
T ss_pred             hhhHHHHhcCCCCCCCcCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCE
Confidence                 11 1111      1135666665542             3689999999999877 999999999888    678


Q ss_pred             EEEEeC
Q 015310          394 VVIFDI  399 (409)
Q Consensus       394 i~v~nR  399 (409)
                      |+++.+
T Consensus       192 Vtv~hs  197 (297)
T PRK14168        192 VTIVHT  197 (297)
T ss_pred             EEEecC
Confidence            998864

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=91.93  E-value=0.3  Score=48.51  Aligned_cols=40  Identities=25%  Similarity=0.382  Sum_probs=35.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|++++|.|+|+.|.+++..+..+|+ +|++++++++|.+.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~  209 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSL  209 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHH
Confidence            57899999999999999988889999 79999998877654

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=91.91  E-value=2.8  Score=40.56  Aligned_cols=127  Identities=18%  Similarity=0.224  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCC--ChhHHHHHH---hcCCCcEEEEeccCCCCCCCC--CCHHHHHHHHHHHH
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQ--PGKDLEIIL---TKKPLPVLIVYRPKWAGGLYE--GDEHKRLEALHLAE   95 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~--~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~~   95 (409)
                      +....+++++.+.|+|.+-+|+..-...+  ..+.+.++.   +..++|+++-.+.  .|...+  .++++.....+.+.
T Consensus        93 ~~~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~--~g~~~e~~~~~~~i~~a~~~a~  170 (267)
T PRK07226         93 KVLVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYP--RGPGIKNEYDPEVVAHAARVAA  170 (267)
T ss_pred             ceeeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEec--CCCccCCCccHHHHHHHHHHHH
Confidence            55666788888999999999987654221  112333333   3358898875432  232221  24455555667888


Q ss_pred             HcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015310           96 DLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGAD  155 (409)
Q Consensus        96 ~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaD  155 (409)
                      +.|+|||=..+....+.++++...  ..++|++|==-  +.-++++..+.+.+..+.||+
T Consensus       171 e~GAD~vKt~~~~~~~~l~~~~~~--~~ipV~a~GGi--~~~~~~~~l~~v~~~~~aGA~  226 (267)
T PRK07226        171 ELGADIVKTNYTGDPESFREVVEG--CPVPVVIAGGP--KTDTDREFLEMVRDAMEAGAA  226 (267)
T ss_pred             HHCCCEEeeCCCCCHHHHHHHHHh--CCCCEEEEeCC--CCCCHHHHHHHHHHHHHcCCc
Confidence            999999977754333455555422  23455554210  111346777788777888887

>PLN02477 glutamate dehydrogenase

Probab=91.91  E-value=0.53  Score=48.47  Aligned_cols=54  Identities=30%  Similarity=0.486  Sum_probs=43.9

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEeCC
Q 015310          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID  400 (409)
Q Consensus       338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~nR~  400 (409)
                      -++|...+++..+.+.         +.+++|++++|.|.|.+|+.++..|.+.|++|+ |.+.+
T Consensus       185 Tg~Gv~~~~~~~~~~~---------g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        185 TGRGVVFATEALLAEH---------GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             chHHHHHHHHHHHHHc---------CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence            3577778877766532         257889999999999999999999999999766 87776

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=91.90  E-value=0.18  Score=47.86  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=31.0

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      ++..+|+|+|.||+|.-++-+|++-|+ +|++++-+
T Consensus        28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D   63 (263)
T COG1179          28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD   63 (263)
T ss_pred             HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence            456789999999999999999999999 99998643

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=91.86  E-value=10  Score=36.07  Aligned_cols=35  Identities=11%  Similarity=-0.004  Sum_probs=26.2

Q ss_pred             EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC
Q 015310           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN   49 (409)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~   49 (409)
                      -++.-.++.++..+-++.+.+. +|++|+=+=+-..
T Consensus         9 y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp   43 (244)
T PRK13125          9 YLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYP   43 (244)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCC
Confidence            3566678999988877776555 9999999954433

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=91.86  E-value=7.3  Score=36.46  Aligned_cols=119  Identities=18%  Similarity=0.184  Sum_probs=74.1

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCC-Cc-EEEEeccCCCCCCCCCCHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKP-LP-VLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~-~P-iI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      .++.-+...+.++...-++.+.+.|.-++|+.++-   ....+.++.+++..+ .| +++-.=|.       .+.+    
T Consensus        14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~---~~a~~~i~~l~~~~~~~p~~~vGaGTV-------~~~~----   79 (213)
T PRK06552         14 GVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTN---PFASEVIKELVELYKDDPEVLIGAGTV-------LDAV----   79 (213)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC---ccHHHHHHHHHHHcCCCCCeEEeeeeC-------CCHH----
Confidence            45667888999999999999999999999999972   122345666665442 23 55433221       1222    


Q ss_pred             HHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           90 ALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        90 ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      -.+.+++.|++|+=    + +....+++ ..++.+..+|--.|    ||  +|+    .++.++|+|++|+
T Consensus        80 ~~~~a~~aGA~Fiv----s-P~~~~~v~~~~~~~~i~~iPG~~----T~--~E~----~~A~~~Gad~vkl  135 (213)
T PRK06552         80 TARLAILAGAQFIV----S-PSFNRETAKICNLYQIPYLPGCM----TV--TEI----VTALEAGSEIVKL  135 (213)
T ss_pred             HHHHHHHcCCCEEE----C-CCCCHHHHHHHHHcCCCEECCcC----CH--HHH----HHHHHcCCCEEEE
Confidence            34677889998864    2 22223344 23455666665544    34  344    3344689999997

>PRK06701 short chain dehydrogenase; Provisional

Probab=91.85  E-value=0.32  Score=47.29  Aligned_cols=38  Identities=32%  Similarity=0.516  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+++++++|.|+ ||.|++++..|.+.|++|++++|+.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~   80 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE   80 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3567899999996 7899999999999999999998875

>PRK12831 putative oxidoreductase; Provisional

Probab=91.84  E-value=0.24  Score=51.80  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=32.2

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..+++++|||+|.+|-++++.|.++|.+|+|+.+.
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~  172 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL  172 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence            45789999999999999999999999999999874

>PLN02852 ferredoxin-NADP+ reductase

Probab=91.83  E-value=0.26  Score=51.90  Aligned_cols=36  Identities=28%  Similarity=0.139  Sum_probs=31.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHh--CCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKS--RGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~--~G~~i~v~nR~~  401 (409)
                      ..+++|+|+|+|.+|-.+|+.|.+  .|++|+|+.|.+
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p   61 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP   61 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence            346789999999999999999986  688999999874

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.81  E-value=0.21  Score=54.35  Aligned_cols=35  Identities=29%  Similarity=0.273  Sum_probs=32.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++++|+|+|.+|.++++.|.+.|.+|+|+.+..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence            58999999999999999999999999999998874

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=91.81  E-value=6.2  Score=37.47  Aligned_cols=89  Identities=18%  Similarity=0.215  Sum_probs=62.9

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC-----------CCChhHHHHHH---hcCCCcEEEEeccCCCC
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-----------FQPGKDLEIIL---TKKPLPVLIVYRPKWAG   77 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~-----------~~~~~~l~~l~---~~~~~PiI~T~R~~~eG   77 (409)
                      .+.+.+.+.+.+++..-++.+ ..++|.||+=.=|=..           ..+.+.+.++.   +..++|+.+-+|...  
T Consensus        69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~--  145 (231)
T TIGR00736        69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC--  145 (231)
T ss_pred             CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC--
Confidence            467999999999999888876 5589999997765211           01122333332   245899999999742  


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEEeccC
Q 015310           78 GLYEGDEHKRLEALHLAEDLGADYVDFELKV  108 (409)
Q Consensus        78 G~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~  108 (409)
                           ++....++.+.+.+.|+++|-|+-..
T Consensus       146 -----~~~~~~~~a~~l~~aGad~i~Vd~~~  171 (231)
T TIGR00736       146 -----IPLDELIDALNLVDDGFDGIHVDAMY  171 (231)
T ss_pred             -----CcchHHHHHHHHHHcCCCEEEEeeCC
Confidence                 23456788888899999999887444

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=91.79  E-value=6.9  Score=37.08  Aligned_cols=133  Identities=19%  Similarity=0.213  Sum_probs=79.5

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC----C-------CChhHHHHHH---hcCCCcEEEEeccCCCC
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN----F-------QPGKDLEIIL---TKKPLPVLIVYRPKWAG   77 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~-------~~~~~l~~l~---~~~~~PiI~T~R~~~eG   77 (409)
                      .+.+.|.+.+.+++.+.++.+.. .+|.||+=+-+=..    .       .+.+.+.++.   +..++|+.+-+|..++ 
T Consensus        74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~-  151 (233)
T cd02911          74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD-  151 (233)
T ss_pred             eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC-
Confidence            35699999999999988887754 57999997776221    0       1112233322   2358898888887432 


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEEEEeccCcc--chHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015310           78 GLYEGDEHKRLEALHLAEDLGADYVDFELKVAS--NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGAD  155 (409)
Q Consensus        78 G~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaD  155 (409)
                             ++..++.+.+.+.|+|+|.+.-....  ...+.+...+ .+..||++-=-+    +.++..+    |.++|||
T Consensus       152 -------~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~-~~ipVIgnGgI~----s~eda~~----~l~~GaD  215 (233)
T cd02911         152 -------VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS-TELFIIGNNSVT----TIESAKE----MFSYGAD  215 (233)
T ss_pred             -------cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc-CCCEEEEECCcC----CHHHHHH----HHHcCCC
Confidence                   35667778888999999988644321  1122222222 345666653221    2233333    3345788


Q ss_pred             EEEEEee
Q 015310          156 IIKLVFS  162 (409)
Q Consensus       156 ivKia~~  162 (409)
                      .|=+...
T Consensus       216 ~VmiGR~  222 (233)
T cd02911         216 MVSVARA  222 (233)
T ss_pred             EEEEcCC
Confidence            7766665

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=91.78  E-value=7.1  Score=36.15  Aligned_cols=136  Identities=14%  Similarity=0.079  Sum_probs=87.0

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCC-HHHH
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGD-EHKR   87 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~-~~~~   87 (409)
                      ..|++|+.+-..+.+++++-++... ...|+||.-.+++..+.+ +.++.+++..  ++++-+...      ... ..++
T Consensus         2 ~~~~l~~alD~~~~~~~~~~~~~~~-~~~~~vk~g~~l~~~~G~-~~v~~ir~~~--~i~~D~k~~------di~~~~~~   71 (215)
T PRK13813          2 KDSRIILALDVTDRERALKIAEELD-DYVDAIKVGWPLVLASGL-GIIEELKRYA--PVIADLKVA------DIPNTNRL   71 (215)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHhcc-ccCCEEEEcHHHHHhhCH-HHHHHHHhcC--CEEEEeecc------ccHHHHHH
Confidence            4678999999999999998887763 346899999999886654 4567776543  455433321      111 1222


Q ss_pred             HHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCC-----CHhHHHHHHHHHHHcCCCEEE
Q 015310           88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETP-----SEEDLGYLVSRMQATGADIIK  158 (409)
Q Consensus        88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp-----~~~~l~~~~~~~~~~gaDivK  158 (409)
                        .++.+.+.|+|+|=+=.....+.+..++ ..++.+.++.+..+- . +|     -.+.+.....-..+.|++..|
T Consensus        72 --~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~-~-~~~~~~~~~~~~~~v~~m~~e~G~~g~~  144 (215)
T PRK13813         72 --ICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEM-S-HPGALEFIQPHADKLAKLAQEAGAFGVV  144 (215)
T ss_pred             --HHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeC-C-CCCCCCCHHHHHHHHHHHHHHhCCCeEE
Confidence              2266778999999987776544444444 345667787664332 1 22     123455555566678988887

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=91.77  E-value=1.7  Score=43.28  Aligned_cols=89  Identities=17%  Similarity=0.164  Sum_probs=62.8

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-C-----C----hhHHHHHHhcCCCcEEEEeccCCCCC
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-Q-----P----GKDLEIILTKKPLPVLIVYRPKWAGG   78 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~-----~----~~~l~~l~~~~~~PiI~T~R~~~eGG   78 (409)
                      +.| +.++|.+.+.+++.+-++.+.+.|+|.+|+=+-+.... .     .    .+.++.+++..++|+++-++..-   
T Consensus        99 ~~p-vi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~---  174 (325)
T cd04739          99 SIP-VIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFF---  174 (325)
T ss_pred             CCe-EEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCc---
Confidence            355 55899999999888888887778999999999764321 1     1    12334455556899999987421   


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015310           79 LYEGDEHKRLEALHLAEDLGADYVDFELK  107 (409)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~~g~dyvDiEl~  107 (409)
                            ++..++.+.+.+.|+|.|.+--.
T Consensus       175 ------~~~~~~a~~l~~~Gadgi~~~nt  197 (325)
T cd04739         175 ------SALAHMAKQLDAAGADGLVLFNR  197 (325)
T ss_pred             ------cCHHHHHHHHHHcCCCeEEEEcC
Confidence                  24556777778889999987543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=91.53  E-value=0.84  Score=50.46  Aligned_cols=100  Identities=22%  Similarity=0.293  Sum_probs=63.3

Q ss_pred             ccHHHHHHHh--cCCCCCeEEE---cccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcH-HHHHHHHHHH
Q 015310          276 DDLKKFFSTY--SSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDC-EASITAIEDA  349 (409)
Q Consensus       276 ~~l~~~~~~~--~~~~~~G~nV---T~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~-~G~~~~l~~~  349 (409)
                      +|.++|++..  ..|.|.|+|.   ..|+=-.+   ++++.+      ..|.-++.  |+ .+|+-.=. .|++++++-.
T Consensus       112 ~d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i---~~~~~~------~~~ip~f~--DD-~~GTa~v~lA~l~na~~~~  179 (752)
T PRK07232        112 EDPDKFIEAVAALEPTFGGINLEDIKAPECFYI---EEKLRE------RMDIPVFH--DD-QHGTAIISAAALLNALELV  179 (752)
T ss_pred             CCHHHHHHHHHHhCCCccEEeeeecCCchHHHH---HHHHHH------hcCCCeec--cc-cchHHHHHHHHHHHHHHHh
Confidence            5677777766  3578999874   44443333   333222      12333443  32 45543333 4455665421


Q ss_pred             HHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC---eEEEEeCC
Q 015310          350 IKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID  400 (409)
Q Consensus       350 l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~---~i~v~nR~  400 (409)
                                   +..++..++++.|||.+|-+++.-|...|.   +|+++++.
T Consensus       180 -------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~  220 (752)
T PRK07232        180 -------------GKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSK  220 (752)
T ss_pred             -------------CCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence                         245777899999999999999999999997   69988853

>PRK06128 oxidoreductase; Provisional

Probab=91.44  E-value=0.33  Score=47.33  Aligned_cols=36  Identities=33%  Similarity=0.488  Sum_probs=31.6

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +++|++||.|+ ||.|++++..|.+.|++|++..|+.
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~   89 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPE   89 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCc
Confidence            67899999996 8899999999999999988877653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=91.43  E-value=0.26  Score=51.63  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=32.5

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+++++|||+|.+|.++++.|.+.|.+|+|+.+..
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~  176 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD  176 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            357899999999999999999999999999998753

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=91.38  E-value=9.3  Score=35.75  Aligned_cols=144  Identities=15%  Similarity=0.125  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .+.+++.+-++++.+.+...|=+.--+      -+...+.++..+. -+.|+=.-+.|..   +-+.+..-.+.+++.|+
T Consensus        15 ~t~~~i~~lc~~A~~~~~~avcv~p~~------v~~a~~~l~~~~v-~v~tVigFP~G~~---~~~~K~~E~~~Av~~GA   84 (211)
T TIGR00126        15 TTEEDIITLCAQAKTYKFAAVCVNPSY------VPLAKELLKGTEV-RICTVVGFPLGAS---TTDVKLYETKEAIKYGA   84 (211)
T ss_pred             CCHHHHHHHHHHHHhhCCcEEEeCHHH------HHHHHHHcCCCCC-eEEEEeCCCCCCC---cHHHHHHHHHHHHHcCC
Confidence            456777777788776665555221110      1122333333333 3444433344432   23445555578999999


Q ss_pred             cEEEEeccCcc-------c---hHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE--e--ecC
Q 015310          100 DYVDFELKVAS-------N---ILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV--F--SVN  164 (409)
Q Consensus       100 dyvDiEl~~~~-------~---~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia--~--~~~  164 (409)
                      |-||+=++...       .   .+.++.. .+..-.|+|+-...    .+.+++....+-+.+.|||++|-.  .  ...
T Consensus        85 dEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~----L~~~ei~~a~~ia~eaGADfvKTsTGf~~~ga  160 (211)
T TIGR00126        85 DEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGL----LTDEEIRKACEICIDAGADFVKTSTGFGAGGA  160 (211)
T ss_pred             CEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCC
Confidence            99999776641       1   2233332 22223677766543    244778888888899999999987  3  345


Q ss_pred             CHhHHHHHHHHhc
Q 015310          165 DITEIARIFQLLS  177 (409)
Q Consensus       165 ~~~D~~~ll~~~~  177 (409)
                      +.+|+..+.+...
T Consensus       161 t~~dv~~m~~~v~  173 (211)
T TIGR00126       161 TVEDVRLMRNTVG  173 (211)
T ss_pred             CHHHHHHHHHHhc
Confidence            6788877776653

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=91.24  E-value=0.29  Score=50.87  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=32.3

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..+++++|+|+|.+|.++++.|.+.|.+|+|+.+.
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~  165 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEAL  165 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            45789999999999999999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PLN02602 lactate dehydrogenase

Probab=91.16  E-value=0.31  Score=49.12  Aligned_cols=40  Identities=15%  Similarity=0.234  Sum_probs=35.5

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCC--eEEEEeCChHHHHhhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~--~i~v~nR~~~ka~~la  408 (409)
                      +++.|+|+|.+|.+++|.|...|.  ++.+++++.++++..+
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a   79 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEM   79 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHH
Confidence            699999999999999999998885  7999999988776654

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=91.16  E-value=2.9  Score=40.97  Aligned_cols=39  Identities=10%  Similarity=0.143  Sum_probs=31.3

Q ss_pred             CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC-CcEEEEeccCc
Q 015310           63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVA  109 (409)
Q Consensus        63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g-~dyvDiEl~~~  109 (409)
                      .+.|+|+.+..        .+.+++.+..+.+.+.| +|+|+|-+.++
T Consensus        90 ~~~p~i~si~g--------~~~~~~~~~a~~~~~aG~~D~iElN~~cP  129 (301)
T PRK07259         90 FDTPIIANVAG--------STEEEYAEVAEKLSKAPNVDAIELNISCP  129 (301)
T ss_pred             cCCcEEEEecc--------CCHHHHHHHHHHHhccCCcCEEEEECCCC
Confidence            47899999863        25788999999988898 99999976554

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=91.12  E-value=0.84  Score=46.68  Aligned_cols=128  Identities=23%  Similarity=0.305  Sum_probs=77.0

Q ss_pred             eeccCCcccCCHHhHHHHHHhcCCCceEeecCc---ccHHHHHHHhcCCCCCeEEE---cccchHHHHhhhhhhcHHHHH
Q 015310          243 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV---DDLKKFFSTYSSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQA  316 (409)
Q Consensus       243 viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~---~~l~~~~~~~~~~~~~G~nV---T~P~K~~i~~~~d~~~~~A~~  316 (409)
                      +-|-||.--+.-. |.++   -|+|..=..+++   +++.++++.+ .+.|.|+|+   -.|-+-.+-..+.+.      
T Consensus        97 ~ag~pVmeGKa~L-fk~f---aGid~~pI~ld~~~~~ei~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~~------  165 (432)
T COG0281          97 LAGKPVMEGKAVL-FKAF---AGIDVLPIELDVGTNNEIIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRYR------  165 (432)
T ss_pred             ccCcchhhhHHHH-HHHh---cCCCceeeEeeCCChHHHHHHHHHh-hhcCCCcceeecccchhhHHHHHHhhc------
Confidence            3345555544322 2322   467754444555   3566666665 578999985   445554444333321      


Q ss_pred             hccceEEEEeCCCCeEEEEcCcH-HHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC---
Q 015310          317 IAAVNTIIRRPSDGKLIGYNTDC-EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---  392 (409)
Q Consensus       317 igAvNti~~~~~~g~l~G~NTD~-~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~---  392 (409)
                         .|.=++.  |+ .+|+-.=. .|++++|+-.             +.+++..++++.|||-||-+++..|...|+   
T Consensus       166 ---~~IPvFh--DD-qqGTaiv~lA~llnalk~~-------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~  226 (432)
T COG0281         166 ---MNIPVFH--DD-QQGTAIVTLAALLNALKLT-------------GKKLKDQKIVINGAGAAGIAIADLLVAAGVKEE  226 (432)
T ss_pred             ---CCCCccc--cc-ccHHHHHHHHHHHHHHHHh-------------CCCccceEEEEeCCcHHHHHHHHHHHHhCCCcc
Confidence               2333343  22 44443332 3445565421             356788899999999999999999999997   


Q ss_pred             eEEEEeCC
Q 015310          393 RVVIFDID  400 (409)
Q Consensus       393 ~i~v~nR~  400 (409)
                      +|++++|.
T Consensus       227 ~i~~~D~~  234 (432)
T COG0281         227 NIFVVDRK  234 (432)
T ss_pred             cEEEEecC
Confidence            59999874

>PLN02686 cinnamoyl-CoA reductase

Probab=91.12  E-value=0.51  Score=47.64  Aligned_cols=43  Identities=19%  Similarity=0.078  Sum_probs=36.3

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .+.++|++||.|+ |+.|++++..|.+.|++|+++.|+.++.+.
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~   92 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEK   92 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            3457899999996 889999999999999999888888765543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=91.11  E-value=0.29  Score=50.97  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=32.6

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+++++|+|+|.+|.++++.|.+.|.+|+|+++..
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~  173 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD  173 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            457899999999999999999999999999998763

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=91.09  E-value=3.5  Score=39.90  Aligned_cols=103  Identities=16%  Similarity=0.265  Sum_probs=69.3

Q ss_pred             EeccCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEEeccCc-------------cchHHHHHhccCCCcEEEEeccCC
Q 015310           70 VYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVA-------------SNILGKQYSSHQSGTRFIVSCNLD  133 (409)
Q Consensus        70 T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~-------------~~~~~~l~~~~~~~~kiI~S~H~f  133 (409)
                      |+|   +||+   +..+.++..++.+.+-+.|+++|++=+-..             .+.++++....++++++.+-.+.-
T Consensus         5 TLR---DG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (266)
T cd07944           5 TLR---DGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG   81 (266)
T ss_pred             Ccc---cCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence            666   5664   456889999999999999999988754222             234455543322356665544321


Q ss_pred             CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCC
Q 015310          134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQV  181 (409)
Q Consensus       134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~  181 (409)
                      .      .-.+.++.+.+.|.|++++++..++.+......+..++...
T Consensus        82 ~------~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~  123 (266)
T cd07944          82 N------DDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGY  123 (266)
T ss_pred             C------CCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCC
Confidence            1      11345666778899999999998888888887777665543

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=91.06  E-value=2  Score=42.60  Aligned_cols=91  Identities=23%  Similarity=0.382  Sum_probs=62.3

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC--------C---CCh----hHHHHHHhcCCCcEEEEecc
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN--------F---QPG----KDLEIILTKKPLPVLIVYRP   73 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~--------~---~~~----~~l~~l~~~~~~PiI~T~R~   73 (409)
                      +.| +.+.|.+.+.+++.+.++.+.+.|+|.||+=.-+=.+        .   +..    +.++.+++..++|+.+-+|.
T Consensus        62 ~~p-~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~  140 (319)
T TIGR00737        62 ETP-ISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI  140 (319)
T ss_pred             cce-EEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence            455 5699999999999999999888899999996654210        0   111    22334445567899888885


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        74 ~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      -++     .+..+-.++.+.+.+.|+++|.|-
T Consensus       141 g~~-----~~~~~~~~~a~~l~~~G~d~i~vh  167 (319)
T TIGR00737       141 GWD-----DAHINAVEAARIAEDAGAQAVTLH  167 (319)
T ss_pred             ccC-----CCcchHHHHHHHHHHhCCCEEEEE
Confidence            322     122234567777788899999873

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=91.04  E-value=0.36  Score=47.90  Aligned_cols=40  Identities=15%  Similarity=0.104  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..++|+++.|+|-|..|++++.-|..+|++|+.++|+.++
T Consensus       132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~  171 (312)
T PRK15469        132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKS  171 (312)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            3467899999999999999999999999999999987654

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=91.02  E-value=1.6  Score=42.67  Aligned_cols=40  Identities=18%  Similarity=0.243  Sum_probs=32.1

Q ss_pred             CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCcc
Q 015310           63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS  110 (409)
Q Consensus        63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~  110 (409)
                      .+.|+++.++.        .+.+++.+..+.+.+.|+|+|+|-+.++.
T Consensus        88 ~~~p~ivsi~g--------~~~~~~~~~a~~~~~~G~d~iElN~~cP~  127 (296)
T cd04740          88 FGTPVIASIAG--------STVEEFVEVAEKLADAGADAIELNISCPN  127 (296)
T ss_pred             CCCcEEEEEec--------CCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence            47899999973        24678888888888889999999877653

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK04148 hypothetical protein; Provisional

Probab=90.99  E-value=0.44  Score=41.36  Aligned_cols=39  Identities=23%  Similarity=0.196  Sum_probs=34.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ++++++++|.| .+.+++-.|.++|.+|+.++.+++..+.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~   54 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEK   54 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            46789999999 8888999999999999999999886654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=90.97  E-value=0.3  Score=50.78  Aligned_cols=39  Identities=23%  Similarity=0.283  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      .+++||+|+|||+|-+|--++-.|.+.|.+|+++-|+..
T Consensus       171 ~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         171 EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            468899999999999999999999999999999999854

>TIGR00292 thiazole biosynthesis enzyme

Probab=90.96  E-value=0.27  Score=47.25  Aligned_cols=33  Identities=21%  Similarity=0.440  Sum_probs=30.4

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      -.++|+|+|.+|.++++.|++.|.+|.|+.|..
T Consensus        22 ~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~   54 (254)
T TIGR00292        22 SDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSL   54 (254)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            459999999999999999999999999998874

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=90.95  E-value=7.6  Score=36.88  Aligned_cols=111  Identities=14%  Similarity=0.044  Sum_probs=63.6

Q ss_pred             CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccc----------------hHHHHH-hccCCCcE
Q 015310           63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN----------------ILGKQY-SSHQSGTR  125 (409)
Q Consensus        63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~----------------~~~~l~-~~~~~~~k  125 (409)
                      .+.|+++.+|..        +.+++.++.+.+.+ ++++|||-+.++..                .+.+++ ..+..+..
T Consensus        66 ~~~~vivnv~~~--------~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~P  136 (231)
T TIGR00736        66 SRALVSVNVRFV--------DLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKP  136 (231)
T ss_pred             hcCCEEEEEecC--------CHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCc
Confidence            467999999963        67888888887755 69999999888653                223333 22222233


Q ss_pred             EEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH--hHHHHHHHHhccC-CCCEEE
Q 015310          126 FIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI--TEIARIFQLLSHC-QVPIIA  185 (409)
Q Consensus       126 iI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~--~D~~~ll~~~~~~-~~p~i~  185 (409)
                      |.+=.--  .. +..+..++.+.+.+.|+|.+-+-.+-...  .|...+-++.... ++|+|+
T Consensus       137 VsvKiR~--~~-~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIg  196 (231)
T TIGR00736       137 IFVKIRG--NC-IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIG  196 (231)
T ss_pred             EEEEeCC--CC-CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEE
Confidence            3222110  00 12356677777888888887665433221  2443334443333 366655

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK12862 malic enzyme; Reviewed

Probab=90.93  E-value=1.1  Score=49.67  Aligned_cols=99  Identities=21%  Similarity=0.222  Sum_probs=62.2

Q ss_pred             ccHHHHHHHh--cCCCCCeEEE---cccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcH-HHHHHHHHHH
Q 015310          276 DDLKKFFSTY--SSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDC-EASITAIEDA  349 (409)
Q Consensus       276 ~~l~~~~~~~--~~~~~~G~nV---T~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~-~G~~~~l~~~  349 (409)
                      +|.++|++..  ..+.|.|+|.   ..|+=-.+   ++.+.+      ..|.-++.  |+ .+|+-.=. .|++++++-.
T Consensus       120 ~d~d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i---~~~~~~------~~~ip~f~--DD-~~GTa~v~la~l~~a~~~~  187 (763)
T PRK12862        120 SDPDKLVEIVAALEPTFGGINLEDIKAPECFYI---ERELRE------RMKIPVFH--DD-QHGTAIIVAAALLNGLKLV  187 (763)
T ss_pred             CCHHHHHHHHHHhCCCcceeeeecccCchHHHH---HHHHHh------cCCCceEe--cC-cccHHHHHHHHHHHHHHHh
Confidence            3555566554  3488999874   45543333   333221      12333444  32 45544333 4556665421


Q ss_pred             HHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC---eEEEEeC
Q 015310          350 IKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDI  399 (409)
Q Consensus       350 l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~---~i~v~nR  399 (409)
                                   +.+++..++++.|||.+|-+++.-|...|+   +|++++|
T Consensus       188 -------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~  227 (763)
T PRK12862        188 -------------GKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDI  227 (763)
T ss_pred             -------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcC
Confidence                         246777899999999999999999999997   6999884

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=90.92  E-value=0.34  Score=52.96  Aligned_cols=35  Identities=34%  Similarity=0.536  Sum_probs=32.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++++|||+|.+|.++++.|.+.|.+|+|++++.
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~  226 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE  226 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            57899999999999999999999999999998864

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=90.89  E-value=2.4  Score=42.11  Aligned_cols=89  Identities=17%  Similarity=0.216  Sum_probs=62.6

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----------CChhHH----HHHHhcC--CCcEEEEec
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-----------QPGKDL----EIILTKK--PLPVLIVYR   72 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-----------~~~~~l----~~l~~~~--~~PiI~T~R   72 (409)
                      .| +.+.|.+.+.+++...++.+.+.|+|.||+=+-+-...           ...+.+    +.+++..  ++|+-+-+|
T Consensus        63 ~p-~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR  141 (312)
T PRK10550         63 TL-VRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR  141 (312)
T ss_pred             Cc-EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence            44 56999999999999989888888999999999884311           111223    3334434  477777777


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           73 PKWAGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        73 ~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      .-     ++ +.++..++.+.+.+.|+++|.|-
T Consensus       142 ~g-----~~-~~~~~~~~a~~l~~~Gvd~i~Vh  168 (312)
T PRK10550        142 LG-----WD-SGERKFEIADAVQQAGATELVVH  168 (312)
T ss_pred             CC-----CC-CchHHHHHHHHHHhcCCCEEEEC
Confidence            52     22 22447788889889999999874

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=90.88  E-value=0.75  Score=41.14  Aligned_cols=38  Identities=29%  Similarity=0.418  Sum_probs=29.8

Q ss_pred             CCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++||+++|+|.++ .++.++.-|.+.|+.|+++...-
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T   70 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT   70 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC
Confidence            678999999999887 99999999999999999987653

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK06199 ornithine cyclodeaminase; Validated

Probab=90.77  E-value=0.4  Score=48.92  Aligned_cols=41  Identities=15%  Similarity=0.131  Sum_probs=36.3

Q ss_pred             CCEEEEEechhHHHHHHHHHHhC--CC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSR--GA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~--G~-~i~v~nR~~~ka~~la  408 (409)
                      -+++.|+|+|.-||.-+.++...  .. +|+|+||+.+++++++
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~  198 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFA  198 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence            47899999999999999998874  37 8999999999998875

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.75  E-value=0.47  Score=47.29  Aligned_cols=39  Identities=23%  Similarity=0.218  Sum_probs=33.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeC---ChHHHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI---DFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR---~~~ka~  405 (409)
                      .|++++|+|+|++|..++..+...|++|++++|   +.+|.+
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~  213 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKAD  213 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHH
Confidence            578999999999999999888899999999998   455543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=90.70  E-value=0.31  Score=47.79  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=31.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      .+.+|+|+|+||.|-.++..|+..|+ +|+|++-+.
T Consensus        18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~   53 (286)
T cd01491          18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP   53 (286)
T ss_pred             hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence            45789999999999999999999999 899998653

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=90.65  E-value=0.36  Score=53.64  Aligned_cols=35  Identities=29%  Similarity=0.432  Sum_probs=32.3

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..+++|+|||+|.+|.++|+.|.+.|.+|+|+.+.
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~  463 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL  463 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            45789999999999999999999999999999874

>TIGR00190 thiC thiamine biosynthesis protein ThiC

Probab=90.62  E-value=4.9  Score=40.97  Aligned_cols=231  Identities=17%  Similarity=0.191  Sum_probs=124.3

Q ss_pred             eeEEEee----ccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHH-HHHhcCCCcE-----EEEeccCCCCCCC
Q 015310           11 TMICAPL----MAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE-IILTKKPLPV-----LIVYRPKWAGGLY   80 (409)
Q Consensus        11 ~~icv~l----~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~-~l~~~~~~Pi-----I~T~R~~~eGG~~   80 (409)
                      +||=+-|    ...+.++-++.++.+.+.|||.|   .|+-..-+.. .+. .+++.+++|+     -=.+. ...+...
T Consensus        61 tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADti---MDLStGgdl~-~iR~~il~~s~vpvGTVPiYqa~~-~~~~~~~  135 (423)
T TIGR00190        61 TKVNANIGTSADTSDIEEEVEKALIAIKYGADTV---MDLSTGGDLD-EIRKAILDAVPVPVGTVPIYQAAE-KVHGAVE  135 (423)
T ss_pred             eEEEeeecCCCCCCCHHHHHHHHHHHHHcCCCeE---eeccCCCCHH-HHHHHHHHcCCCCccCccHHHHHH-HhcCChh
Confidence            4444444    33445555566778888999998   5766543322 232 2334444443     11111 1123455


Q ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEec----------cCCCCCCCHhHHHHHHHHHH
Q 015310           81 EGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC----------NLDCETPSEEDLGYLVSRMQ  150 (409)
Q Consensus        81 ~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~----------H~f~~tp~~~~l~~~~~~~~  150 (409)
                      ..++++.++.++.=++.|+||+-|=-....+.++.+..  .+..-=|+|.          |+-++.|=.++...+++-++
T Consensus       136 ~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~--~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~  213 (423)
T TIGR00190       136 DMDEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKR--SGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAK  213 (423)
T ss_pred             hCCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHh--CCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHH
Confidence            67899999999999999999999877666655555532  2233346664          66678887777777777777


Q ss_pred             HcCCCEEEE--EeecCCH---hHHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHH
Q 015310          151 ATGADIIKL--VFSVNDI---TEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESL  225 (409)
Q Consensus       151 ~~gaDivKi--a~~~~~~---~D~~~ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l  225 (409)
                      ++.. .+=+  ...|-..   .|-..+.++..          .|++-+-.|=.+-   .+     +-+  -||.+++.++
T Consensus       214 ~yDV-tlSLGDglRPG~i~DA~D~aQi~El~~----------lgeL~~rA~e~gV---Qv-----MVE--GPGHvPl~~I  272 (423)
T TIGR00190       214 EYDV-TLSLGDGLRPGCIADATDRAQISELIT----------LGELVERAREADV---QC-----MVE--GPGHVPLDQI  272 (423)
T ss_pred             HhCe-eeeccCCcCCCccccCCcHHHHHHHHH----------HHHHHHHHHHcCC---eE-----EEE--CCCCCcHHHH
Confidence            6541 0000  1223333   33333333321          1222222222211   11     123  3999999998


Q ss_pred             HhhhhhccccccceEEeeeccCCccc------CCHHhHHHHHHhcCCCce
Q 015310          226 RQTYKVEHINADTKVFGLISKPVGHS------KGPILHNPTFRHVNYNGI  269 (409)
Q Consensus       226 ~~~~~~~~i~~~~~~~~viG~pi~hS------~SP~ihn~~f~~~gl~~~  269 (409)
                      ..-.++....-..-=|+|+|-=+.-.      .+-.|=-+.....|-|..
T Consensus       273 ~~nv~lqK~lc~~APfYvLGPLvTDiApGYDHItsAIGgAiAa~~GAdfL  322 (423)
T TIGR00190       273 EANVRLQKELCDEAPFYVLGPLVTDIAPGYDHITSAIGAAIAGWAGADFL  322 (423)
T ss_pred             HHHHHHHHHhhCCCCeeecCCcccccCCCchHHHHHHHHHHHHHcCCCeE
Confidence            87766532222223388888433322      233444445566676653

The thiC ortholog is designated thiA in Bacillus subtilis.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=90.56  E-value=19  Score=38.16  Aligned_cols=32  Identities=31%  Similarity=0.327  Sum_probs=28.6

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR  399 (409)
                      ...++|||+|.+|.++|..|++.|.+++|+.+
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~  242 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE  242 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            45799999999999999999999998888754

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=90.54  E-value=14  Score=37.43  Aligned_cols=194  Identities=15%  Similarity=0.195  Sum_probs=109.9

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +.++.++-++...+.|.|.+|.=+=...+ .+.+.+..+.+.. +..+..-.|..             .+-++.+++.|+
T Consensus        21 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~-~~~e~i~~i~~~~~~~~i~~~~r~~-------------~~di~~a~~~g~   86 (365)
T TIGR02660        21 TAAEKLAIARALDEAGVDELEVGIPAMGE-EERAVIRAIVALGLPARLMAWCRAR-------------DADIEAAARCGV   86 (365)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHcCCCcEEEEEcCCC-------------HHHHHHHHcCCc
Confidence            34555555566667899999995322211 1123455554432 33333333432             223567788899


Q ss_pred             cEEEEeccCcc------------chH---HHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310          100 DYVDFELKVAS------------NIL---GKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus       100 dyvDiEl~~~~------------~~~---~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      +.|-+=....+            +.+   .+.+ .+++.+.++-.++=|+..++ .+.+.++++.+.++|+|.+-++=+.
T Consensus        87 ~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~-~~~l~~~~~~~~~~Ga~~i~l~DT~  165 (365)
T TIGR02660        87 DAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRAD-PDFLVELAEVAAEAGADRFRFADTV  165 (365)
T ss_pred             CEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCC-HHHHHHHHHHHHHcCcCEEEEcccC
Confidence            98888776543            111   1222 35566778888877765554 6789999999999999998887544


Q ss_pred             C--CHhHHHHHHHHhccC-CCCEEEEEcCcc--chhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhh
Q 015310          164 N--DITEIARIFQLLSHC-QVPIIAYSVGER--GLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTY  229 (409)
Q Consensus       164 ~--~~~D~~~ll~~~~~~-~~p~i~~~MG~~--G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~  229 (409)
                      -  ++.++.++.+.+.+. +.|+-.=+=-..  +...=+..-..|....-+++.. +-..|..+++++...+
T Consensus       166 G~~~P~~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L  237 (365)
T TIGR02660       166 GILDPFSTYELVRALRQAVDLPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAMAL  237 (365)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccccccccCCHHHHHHHH
Confidence            3  577887777765432 444321111111  2222222333344333333332 2457778888776655

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=90.53  E-value=0.5  Score=45.57  Aligned_cols=39  Identities=36%  Similarity=0.413  Sum_probs=34.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~  405 (409)
                      .+++++|+|+|+.|.+++..++.+|+ +|++++++.+|.+
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~  159 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRE  159 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            57899999999999999998899999 5988888877754

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=90.49  E-value=11  Score=36.02  Aligned_cols=193  Identities=16%  Similarity=0.204  Sum_probs=107.7

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +.++.++-++...+.|.|.+|.=+=.+.+ .+.+.+..+.+. .+..+..-.|..         +    +-++.+.+.|+
T Consensus        18 ~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~-~~~e~~~~l~~~~~~~~~~~~~r~~---------~----~~v~~a~~~g~   83 (259)
T cd07939          18 SREEKLAIARALDEAGVDEIEVGIPAMGE-EEREAIRAIVALGLPARLIVWCRAV---------K----EDIEAALRCGV   83 (259)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHHHHHhcCCCCEEEEeccCC---------H----HHHHHHHhCCc
Confidence            45566666666677899999996322221 112345555442 233333333321         1    12466778899


Q ss_pred             cEEEEeccCccch------------H---HHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310          100 DYVDFELKVASNI------------L---GKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus       100 dyvDiEl~~~~~~------------~---~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      ++|-+-....+..            +   .+.+ .+++.+..+-++.=+...+ +.+.+.++++++.+.|+|.+=++=+.
T Consensus        84 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~i~l~DT~  162 (259)
T cd07939          84 TAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRA-DPDFLIEFAEVAQEAGADRLRFADTV  162 (259)
T ss_pred             CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCC-CHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence            9988866554321            1   1222 3556677777666554333 36889999999999999988777443


Q ss_pred             C--CHhHHHHHHHHhcc-CCCCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          164 N--DITEIARIFQLLSH-CQVPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       164 ~--~~~D~~~ll~~~~~-~~~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      -  ++.++.+++..+.+ .+.|+-.     ++||..-.+.   .-.-|..+.=+++.. +-..|..+.+++...++.
T Consensus       163 G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~Gla~An~la---Ai~aG~~~vd~s~~G~G~~aGN~~tE~lv~~l~~  236 (259)
T cd07939         163 GILDPFTTYELIRRLRAATDLPLEFHAHNDLGLATANTLA---AVRAGATHVSVTVNGLGERAGNAALEEVVMALKH  236 (259)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHH---HHHhCCCEEEEecccccccccCcCHHHHHHHHHH
Confidence            3  57888888776543 2333211     1122221222   222233232233322 245888888888776653

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=90.46  E-value=0.37  Score=50.39  Aligned_cols=35  Identities=37%  Similarity=0.440  Sum_probs=32.2

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++++|+|+|.+|.++++.|.+.|.+|+|+.+..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~  174 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP  174 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            57899999999999999999999999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=90.40  E-value=0.51  Score=46.95  Aligned_cols=40  Identities=23%  Similarity=0.226  Sum_probs=33.2

Q ss_pred             CCCEEEEEechhHHHHHHHHHHh-CCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~-~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+++|+|+|+.|..++..++. .|. +|++++++++|.+.
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~  204 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDL  204 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHH
Confidence            47899999999999988877775 565 89999999887654

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK14851 hypothetical protein; Provisional

Probab=90.32  E-value=0.31  Score=53.36  Aligned_cols=35  Identities=31%  Similarity=0.444  Sum_probs=31.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++.+|+|+|+||.|..++..|+..|+ +++|++-|
T Consensus        41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D   76 (679)
T PRK14851         41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD   76 (679)
T ss_pred             HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            456899999999999999999999999 99998755

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=90.29  E-value=0.18  Score=43.35  Aligned_cols=40  Identities=23%  Similarity=0.203  Sum_probs=33.3

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChHHHHhhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFEQSLLLL  408 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~ka~~la  408 (409)
                      -++-|||+|-+|.+.+.+|.+.|.. +-|++|+.+.++.++
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~   51 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAA   51 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccc
Confidence            4899999999999999999999995 467799987777664

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=90.26  E-value=5.7  Score=36.99  Aligned_cols=120  Identities=19%  Similarity=0.220  Sum_probs=72.0

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      .++.-+...+.++...-++.+.+.|..++|+.++-   ....+.++.+++..+ -+++-.=|.       .+.+    -.
T Consensus         9 ~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t---~~a~~~i~~l~~~~~-~~~vGAGTV-------l~~~----~a   73 (204)
T TIGR01182         9 KIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRT---PVALDAIRLLRKEVP-DALIGAGTV-------LNPE----QL   73 (204)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCC---ccHHHHHHHHHHHCC-CCEEEEEeC-------CCHH----HH
Confidence            35566888999999999999999999999999853   122344556654433 133322111       1222    24


Q ss_pred             HHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310           92 HLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF  161 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~  161 (409)
                      +.+++.|++|+ |-=.    +..++. ..++.+..+|--    --||+  |    +.++.++|||++|+--
T Consensus        74 ~~a~~aGA~Fi-vsP~----~~~~v~~~~~~~~i~~iPG----~~Tpt--E----i~~A~~~Ga~~vKlFP  129 (204)
T TIGR01182        74 RQAVDAGAQFI-VSPG----LTPELAKHAQDHGIPIIPG----VATPS--E----IMLALELGITALKLFP  129 (204)
T ss_pred             HHHHHcCCCEE-ECCC----CCHHHHHHHHHcCCcEECC----CCCHH--H----HHHHHHCCCCEEEECC
Confidence            56788999998 2212    223333 234455544442    24664  2    4556688999999743

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK06436 glycerate dehydrogenase; Provisional

Probab=90.21  E-value=0.48  Score=46.84  Aligned_cols=38  Identities=26%  Similarity=0.440  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+.||++.|+|-|.+|++++.-|..+|++|+.++|+.
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~  155 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY  155 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            35789999999999999999998888999999999974

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=90.18  E-value=0.36  Score=46.45  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=30.3

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|+|+|.+|.++++.|++.|.+|.|+.|..
T Consensus        26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~   58 (257)
T PRK04176         26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL   58 (257)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence            469999999999999999999999999998864

>PRK06823 ornithine cyclodeaminase; Validated

Probab=90.17  E-value=0.53  Score=46.79  Aligned_cols=41  Identities=10%  Similarity=-0.015  Sum_probs=36.0

Q ss_pred             CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la  408 (409)
                      .+++.|+|+|.-|+.-+.++... .. +|+|+||+.+++++++
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~  170 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYR  170 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHH
Confidence            47899999999999999988765 45 8999999999998875

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=90.08  E-value=0.35  Score=45.49  Aligned_cols=32  Identities=28%  Similarity=0.509  Sum_probs=29.8

Q ss_pred             EEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .|+|+|||.++..++|.|++.|.+|.|+.|+.
T Consensus        32 DViIVGaGPsGLtAAyyLAk~g~kV~i~E~~l   63 (262)
T COG1635          32 DVIIVGAGPSGLTAAYYLAKAGLKVAIFERKL   63 (262)
T ss_pred             cEEEECcCcchHHHHHHHHhCCceEEEEEeec
Confidence            59999999999999999999999999998864

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=90.07  E-value=0.55  Score=46.32  Aligned_cols=41  Identities=17%  Similarity=0.308  Sum_probs=36.3

Q ss_pred             CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la  408 (409)
                      .+++.|+|+|.-|+.-+.++... .. +|+|+||+.+++++++
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~  159 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFA  159 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHH
Confidence            47899999999999999888765 56 8999999999999875

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=90.06  E-value=1.8  Score=43.65  Aligned_cols=78  Identities=19%  Similarity=0.127  Sum_probs=51.5

Q ss_pred             HHHHHHHHhcCCCEEEEEecC-------CCCC----CC-------------hhHHHHHHhcCC----CcEEEEeccCC--
Q 015310           26 LSNMYQAKAEGADVVEIRLDC-------INNF----QP-------------GKDLEIILTKKP----LPVLIVYRPKW--   75 (409)
Q Consensus        26 ~~~~~~~~~~~aD~vElRlD~-------l~~~----~~-------------~~~l~~l~~~~~----~PiI~T~R~~~--   75 (409)
                      .+.++++.+.|.|.||+-.-+       +...    .+             .+.+..+++..+    .++.+.+|-..  
T Consensus       147 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~  226 (353)
T cd04735         147 GEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE  226 (353)
T ss_pred             HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc
Confidence            444566677899999998753       2211    11             133445555444    67888888553  


Q ss_pred             --CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310           76 --AGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        76 --eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl  106 (409)
                        +||   .+.++..++++.+.+.|+|||+|-.
T Consensus       227 ~~~~g---~~~ee~~~i~~~L~~~GvD~I~Vs~  256 (353)
T cd04735         227 PEEPG---IRMEDTLALVDKLADKGLDYLHISL  256 (353)
T ss_pred             ccCCC---CCHHHHHHHHHHHHHcCCCEEEecc
Confidence              334   3567888999999999999999854

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=90.04  E-value=1.2  Score=46.31  Aligned_cols=50  Identities=20%  Similarity=0.341  Sum_probs=41.3

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEE
Q 015310          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  396 (409)
Q Consensus       338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v  396 (409)
                      -++|...+++..+...         +.+++|++|+|-|.|.+|..++..|.+.|++|+.
T Consensus       207 Tg~Gv~~~~~~~~~~~---------g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVa  256 (445)
T PRK14030        207 TGFGALYFVHQMLETK---------GIDIKGKTVAISGFGNVAWGAATKATELGAKVVT  256 (445)
T ss_pred             cHHHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence            4578888887766532         2578999999999999999999999999997666

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=89.97  E-value=0.38  Score=46.18  Aligned_cols=36  Identities=25%  Similarity=0.252  Sum_probs=32.4

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      +++.+|+|+|+||.|..++..|...|+ +|+|++-+.
T Consensus        24 L~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~   60 (287)
T PTZ00245         24 LMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL   60 (287)
T ss_pred             HhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCc
Confidence            456789999999999999999999999 999998664

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=89.97  E-value=0.36  Score=52.72  Aligned_cols=33  Identities=36%  Similarity=0.524  Sum_probs=30.8

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|||+|-+|.++|+.|++.|.+|+|+.|..
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            579999999999999999999999999999863

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.96  E-value=0.63  Score=48.16  Aligned_cols=36  Identities=42%  Similarity=0.642  Sum_probs=32.4

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ++++++++|.|+ ||.|++++..|.+.|++|++++|.
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~  243 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVP  243 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457899999997 999999999999999999988884

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.96  E-value=0.58  Score=48.34  Aligned_cols=42  Identities=24%  Similarity=0.249  Sum_probs=37.9

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ...++++|+|.|..|+.++..|.+.|.+++++++++++.+.+
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~  270 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEEL  270 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            456899999999999999999999999999999999887665

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=89.82  E-value=0.55  Score=46.28  Aligned_cols=40  Identities=28%  Similarity=0.291  Sum_probs=35.2

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~ka~~  406 (409)
                      .|.+++|+|+|+.|.+++..+...|++ |++++++.+|.+.
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~  203 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLEL  203 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            478999999999999999999999995 9999998877654

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=89.79  E-value=0.57  Score=45.90  Aligned_cols=39  Identities=21%  Similarity=0.212  Sum_probs=32.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~  405 (409)
                      ++++++|+|+|++|..++..++..|+ .|.+++++.+|.+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~  183 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRD  183 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence            46789999999999999988888999 5777888777654

>PRK07574 formate dehydrogenase; Provisional

Probab=89.78  E-value=0.48  Score=48.38  Aligned_cols=38  Identities=24%  Similarity=0.185  Sum_probs=35.1

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++|+.++|+.
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~  225 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR  225 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence            35789999999999999999999999999999999975

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=89.78  E-value=1.2  Score=38.85  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=32.7

Q ss_pred             CCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR~  400 (409)
                      .+++||+++|+|.+. .|+.++.-|.+.|+.+++++++
T Consensus        24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~   61 (140)
T cd05212          24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK   61 (140)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC
Confidence            678999999999766 8999999999999999999853

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK02227 hypothetical protein; Provisional

Probab=89.74  E-value=3.3  Score=39.33  Aligned_cols=98  Identities=14%  Similarity=0.093  Sum_probs=60.9

Q ss_pred             HHHHcCCcEEEEeccC-------ccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015310           93 LAEDLGADYVDFELKV-------ASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND  165 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~-------~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~  165 (409)
                      .+++.|+|+||+-=-.       +...+++++..-++...+=...-|+...|  .++......+...|+|+||+-.++.+
T Consensus        15 ~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p--~~~~~aa~~~a~~GvDyVKvGl~~~~   92 (238)
T PRK02227         15 EALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKP--GTISLAALGAAATGADYVKVGLYGGK   92 (238)
T ss_pred             HHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCc--hHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence            4567889999984322       22456666643333332222233443334  67888888999999999999998554


Q ss_pred             -HhHHHHHHHHh----ccC--CCCEEEEEcCccc
Q 015310          166 -ITEIARIFQLL----SHC--QVPIIAYSVGERG  192 (409)
Q Consensus       166 -~~D~~~ll~~~----~~~--~~p~i~~~MG~~G  192 (409)
                       .++....++-.    ...  +..+|+....+.+
T Consensus        93 ~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~  126 (238)
T PRK02227         93 TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAH  126 (238)
T ss_pred             cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccc
Confidence             55555555332    222  5678887777765

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=89.73  E-value=0.58  Score=46.40  Aligned_cols=41  Identities=20%  Similarity=0.179  Sum_probs=30.9

Q ss_pred             CCEEEEEechhHHHHHHHHHHh-CCC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~-~G~-~i~v~nR~~~ka~~la  408 (409)
                      .+++.|+|+|.-|+.-+.++.. .+. +|+|++|+.+++++++
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~  170 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFA  170 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHH
Confidence            4689999999999999988876 567 8999999999999876

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=89.69  E-value=3.5  Score=41.29  Aligned_cols=92  Identities=11%  Similarity=0.109  Sum_probs=66.2

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----------CCh----hHHHHHHhcCCCcEEEEeccC
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-----------QPG----KDLEIILTKKPLPVLIVYRPK   74 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-----------~~~----~~l~~l~~~~~~PiI~T~R~~   74 (409)
                      +| +.+.|.+.+.+++.+.++.+.+.|+|.||+=..+-...           ...    +.++.+++..+.|+-+-+|-.
T Consensus        65 ~p-~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g  143 (333)
T PRK11815         65 HP-VALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIG  143 (333)
T ss_pred             Cc-EEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEee
Confidence            44 66999999999999999998888999999988763210           111    233344444578888877865


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           75 WAGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        75 ~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      .++.   .+.++..++.+.+.+.|+++|.|-
T Consensus       144 ~~~~---~t~~~~~~~~~~l~~aG~d~i~vh  171 (333)
T PRK11815        144 IDDQ---DSYEFLCDFVDTVAEAGCDTFIVH  171 (333)
T ss_pred             eCCC---cCHHHHHHHHHHHHHhCCCEEEEc
Confidence            5542   244567788888889999998875

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=89.69  E-value=0.59  Score=44.09  Aligned_cols=38  Identities=18%  Similarity=0.139  Sum_probs=33.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+++++|||+|+|.+|.-=+..|.+.|++|+|++-+.
T Consensus        21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i   58 (223)
T PRK05562         21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKF   58 (223)
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            34678999999999999888899999999999998764

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=89.68  E-value=12  Score=35.25  Aligned_cols=189  Identities=16%  Similarity=0.138  Sum_probs=98.3

Q ss_pred             CHHHHHHHHHHHHhcCCC---EEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310           21 SVEQVLSNMYQAKAEGAD---VVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD---~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (409)
                      ++.++.+.   +.+.|+|   ++.+=-|........+.+.++++..++|+++.      ||-.+.  ++-.    .++..
T Consensus        28 d~~~~a~~---~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~------GGI~s~--~d~~----~~l~~   92 (243)
T cd04731          28 DPVELAKR---YNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVG------GGIRSL--EDAR----RLLRA   92 (243)
T ss_pred             CHHHHHHH---HHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEe------CCCCCH--HHHH----HHHHc
Confidence            55555544   4456888   44433332121122345666767778999954      776533  2222    22346


Q ss_pred             CCcEEEEeccC--ccchHHHHHhccCCCcEEEEeccC---------------CCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           98 GADYVDFELKV--ASNILGKQYSSHQSGTRFIVSCNL---------------DCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        98 g~dyvDiEl~~--~~~~~~~l~~~~~~~~kiI~S~H~---------------f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      |++.|.+=...  ..+.+.++...- +.-++++|.--               ++.+  ..+..+..+++.+.|+|.+=+-
T Consensus        93 G~~~v~ig~~~~~~p~~~~~i~~~~-~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~--~~~~~~~~~~l~~~G~d~i~v~  169 (243)
T cd04731          93 GADKVSINSAAVENPELIREIAKRF-GSQCVVVSIDAKRRGDGGYEVYTHGGRKPT--GLDAVEWAKEVEELGAGEILLT  169 (243)
T ss_pred             CCceEEECchhhhChHHHHHHHHHc-CCCCEEEEEEeeecCCCceEEEEcCCceec--CCCHHHHHHHHHHCCCCEEEEe
Confidence            88888875433  334555554221 22257777421               1122  2456777888899999975552


Q ss_pred             eecCC----HhHHHHHHHHhccCCCCEEEEE-cCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhh
Q 015310          161 FSVND----ITEIARIFQLLSHCQVPIIAYS-VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK  230 (409)
Q Consensus       161 ~~~~~----~~D~~~ll~~~~~~~~p~i~~~-MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~  230 (409)
                      ....+    .-|...+-++....+.|+|+-+ +...-.+-+++..  +. .....++.+--.|+++++++++.++
T Consensus       170 ~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~--~g-~dgv~vg~al~~~~~~~~~~~~~~~  241 (243)
T cd04731         170 SMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEE--GG-ADAALAASIFHFGEYTIAELKEYLA  241 (243)
T ss_pred             ccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHh--CC-CCEEEEeHHHHcCCCCHHHHHHHHh
Confidence            22221    1122222333334578877653 3333345555532  11 1223334444578899998877653

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PLN02342 ornithine carbamoyltransferase

Probab=89.67  E-value=16  Score=36.97  Aligned_cols=187  Identities=13%  Similarity=0.061  Sum_probs=118.1

Q ss_pred             EEEcCccchhhhhhcCCCCCccccccCCCCCCC------CCCCHHHHHhhhhhc----cc----------cccceEEeee
Q 015310          185 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL------GLPTVESLRQTYKVE----HI----------NADTKVFGLI  244 (409)
Q Consensus       185 ~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAP------GQ~~~~~l~~~~~~~----~i----------~~~~~~~~vi  244 (409)
                      +++.....+-+|+.+...|+.-|..+.+.....      .|++-+|+..+++.-    ..          .......-+|
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lsi~dls~~ei~~ll~~A~~lk~~~~~~~~~~~~L~gk~va~lF   92 (348)
T PLN02342         13 AVSSSSRARRGLVVCAASSSAAAPSPIKGKSKPKHFLHIDDFDKEEILGLLDRAKEVKALLKSGDRSFQPFKGKSMAMIF   92 (348)
T ss_pred             cccchhHHHHhhhHhhhhcCCCCcccccCCCCCCCccchhhCCHHHHHHHHHHHHHHHhhhhcCccccccCCCCEEEEEe
Confidence            455666677889999999998887666554332      566777777777521    10          1111233355


Q ss_pred             ccCCcccCCHHhHHHHHHhcCCCceEeecCc------ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhc
Q 015310          245 SKPVGHSKGPILHNPTFRHVNYNGIYVPMFV------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIA  318 (409)
Q Consensus       245 G~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~------~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~ig  318 (409)
                      =.|-.  |+-.=+..+..+||-...|.....      |.+.+....+... ++++-+=.|-...+..+.       +..+
T Consensus        93 ~epST--RTR~SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y-~D~IviR~~~~~~~~~la-------~~~~  162 (348)
T PLN02342         93 TKPSM--RTRVSFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRY-NDIIMARVFAHQDVLDLA-------EYSS  162 (348)
T ss_pred             cCCCc--chHHHHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEeCCChHHHHHHH-------HhCC
Confidence            55543  555556899999999988874332      5677777777554 677777666444332222       2111


Q ss_pred             cceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310          319 AVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF  397 (409)
Q Consensus       319 AvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~  397 (409)
                       | -|++-. ++  ..+=|-...=+.++.+.+             ..++|.+++++|-+. ++++.+.++..+|++|+++
T Consensus       163 -v-PVINA~-~~--~~HPtQaLaDl~Ti~e~~-------------G~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~  224 (348)
T PLN02342        163 -V-PVINGL-TD--YNHPCQIMADALTIIEHI-------------GRLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCA  224 (348)
T ss_pred             -C-CEEECC-CC--CCChHHHHHHHHHHHHHh-------------CCcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEE
Confidence             1 244431 22  246666555556665433             247899999999744 9999999999999998887


Q ss_pred             eC
Q 015310          398 DI  399 (409)
Q Consensus       398 nR  399 (409)
                      .-
T Consensus       225 ~P  226 (348)
T PLN02342        225 CP  226 (348)
T ss_pred             CC
Confidence            63

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=89.66  E-value=2.5  Score=42.42  Aligned_cols=81  Identities=14%  Similarity=0.115  Sum_probs=50.0

Q ss_pred             HHHHHHHHhcCCCEEEEEecC-------CCCC----CC-------------hhHHHHHHhcCCCcEEEEeccCCCCCCCC
Q 015310           26 LSNMYQAKAEGADVVEIRLDC-------INNF----QP-------------GKDLEIILTKKPLPVLIVYRPKWAGGLYE   81 (409)
Q Consensus        26 ~~~~~~~~~~~aD~vElRlD~-------l~~~----~~-------------~~~l~~l~~~~~~PiI~T~R~~~eGG~~~   81 (409)
                      ...++++.+.|.|.||+-.-+       |...    ++             .+.+..+++..+.|+.+-++.. |...--
T Consensus       145 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~-d~~~~G  223 (337)
T PRK13523        145 KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISAS-DYHPGG  223 (337)
T ss_pred             HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEeccc-ccCCCC
Confidence            344556677899999998773       2211    11             1344455555566665555432 221112


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEecc
Q 015310           82 GDEHKRLEALHLAEDLGADYVDFELK  107 (409)
Q Consensus        82 ~~~~~~~~ll~~~~~~g~dyvDiEl~  107 (409)
                      .+.++..++.+.+.+.|+|||+|-..
T Consensus       224 ~~~~e~~~i~~~l~~~gvD~i~vs~g  249 (337)
T PRK13523        224 LTVQDYVQYAKWMKEQGVDLIDVSSG  249 (337)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence            36788999999998999999998543

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=89.58  E-value=0.67  Score=46.13  Aligned_cols=40  Identities=40%  Similarity=0.591  Sum_probs=35.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|.+++|+|+|+.|.+++..+...|++|+++.++.+|.+.
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~  205 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEM  205 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence            4789999999999999999999999998888888877654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=89.56  E-value=7  Score=39.28  Aligned_cols=148  Identities=18%  Similarity=0.264  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .|.+.-++|+++..+.|||+|=+=+.-.   +..+.+..+.+..++|++.-+-             .-.++...+++.|+
T Consensus        39 ~Dv~atv~Qi~~L~~aGceiVRvav~~~---~~a~al~~I~~~~~iPlvADIH-------------Fd~~lAl~a~~~G~  102 (360)
T PRK00366         39 ADVEATVAQIKRLARAGCEIVRVAVPDM---EAAAALPEIKKQLPVPLVADIH-------------FDYRLALAAAEAGA  102 (360)
T ss_pred             hhHHHHHHHHHHHHHcCCCEEEEccCCH---HHHHhHHHHHHcCCCCEEEecC-------------CCHHHHHHHHHhCC
Confidence            3456678888888899999995544322   2345677788888999996542             11234456777888


Q ss_pred             cEEEEeccCc---cchHHHHH-hccCCCcEE-EEeccC---------C-CCCCC--HhHHHHHHHHHHHcCCCEEEEEee
Q 015310          100 DYVDFELKVA---SNILGKQY-SSHQSGTRF-IVSCNL---------D-CETPS--EEDLGYLVSRMQATGADIIKLVFS  162 (409)
Q Consensus       100 dyvDiEl~~~---~~~~~~l~-~~~~~~~ki-I~S~H~---------f-~~tp~--~~~l~~~~~~~~~~gaDivKia~~  162 (409)
                      |-|-|-=-..   ++.++.++ .+++.++.| |+-.|=         + +.||.  .+...+.++-+.++|-+=+|+-..
T Consensus       103 ~~iRINPGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~K  182 (360)
T PRK00366        103 DALRINPGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVK  182 (360)
T ss_pred             CEEEECCCCCCchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE
Confidence            8876643332   23455555 345555544 443331         1 12431  133456677788899999999999


Q ss_pred             cCCHhHHHHHHHHhcc-CCCCE
Q 015310          163 VNDITEIARIFQLLSH-CQVPI  183 (409)
Q Consensus       163 ~~~~~D~~~ll~~~~~-~~~p~  183 (409)
                      +.+..+..+..+++.+ ++.|+
T Consensus       183 sS~v~~~i~ayrlla~~~dyPL  204 (360)
T PRK00366        183 ASDVQDLIAAYRLLAKRCDYPL  204 (360)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCc
Confidence            9998887776666543 36664

>PRK13984 putative oxidoreductase; Provisional

Probab=89.55  E-value=0.46  Score=51.29  Aligned_cols=36  Identities=19%  Similarity=0.304  Sum_probs=32.6

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+++++|+|+|.+|.++++.|.++|.+|+|+.+..
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~  316 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS  316 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            357899999999999999999999999999998764

>PLN03139 formate dehydrogenase; Provisional

Probab=89.42  E-value=0.63  Score=47.54  Aligned_cols=38  Identities=26%  Similarity=0.239  Sum_probs=35.1

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|.+++|+.
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~  232 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK  232 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCC
Confidence            45789999999999999999999999999999999874

>PRK07589 ornithine cyclodeaminase; Validated

Probab=89.41  E-value=0.64  Score=46.80  Aligned_cols=41  Identities=27%  Similarity=0.406  Sum_probs=35.5

Q ss_pred             CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la  408 (409)
                      -+++.|+|+|.-|+.-+.++... .. +|+|+||+.+++++++
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~  171 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLA  171 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHH
Confidence            36899999999999998887765 46 8999999999998875

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=89.36  E-value=0.44  Score=54.65  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=31.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .+++|+|||+|.+|.++|+.|++.|.+|+|+.+.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~  462 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEAL  462 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence            5789999999999999999999999999999875

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=89.35  E-value=4.4  Score=37.05  Aligned_cols=79  Identities=15%  Similarity=0.268  Sum_probs=50.0

Q ss_pred             EeeccCCHHHHHHHHHHHHhcCCCEEEEE-ec--CCCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310           15 APLMAQSVEQVLSNMYQAKAEGADVVEIR-LD--CINNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (409)
Q Consensus        15 v~l~~~~~~e~~~~~~~~~~~~aD~vElR-lD--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (409)
                      .+|...+.+.+.++++.+.+.|+|.+|+- .|  +..+... .+.++.+++..+.|+.+.+...        +.++   +
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~--------~~~~---~   71 (210)
T TIGR01163         3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVE--------NPDR---Y   71 (210)
T ss_pred             chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeC--------CHHH---H
Confidence            56777888888888888888899999994 33  2333322 2456677665677864434332        1222   3


Q ss_pred             HHHHHHcCCcEEEE
Q 015310           91 LHLAEDLGADYVDF  104 (409)
Q Consensus        91 l~~~~~~g~dyvDi  104 (409)
                      ++.+.+.|+|.|=+
T Consensus        72 ~~~~~~~gadgv~v   85 (210)
T TIGR01163        72 IEDFAEAGADIITV   85 (210)
T ss_pred             HHHHHHcCCCEEEE
Confidence            55666788877443

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=89.31  E-value=0.5  Score=53.97  Aligned_cols=42  Identities=17%  Similarity=0.163  Sum_probs=36.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-e-------------EEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-R-------------VVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~-------------i~v~nR~~~ka~~la  408 (409)
                      +.|+|+|||||.+|+.++..|.+..- +             |+|++++.+++++++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la  623 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETV  623 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHH
Confidence            46799999999999999999987642 4             999999999999875

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=89.30  E-value=9.8  Score=35.61  Aligned_cols=119  Identities=18%  Similarity=0.196  Sum_probs=72.3

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      .++.-+...+.++..+-++.+.+.|.+++|+-+.   .....+.++.+++..+- +++-.=|.       .++    +-.
T Consensus        16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~---~~~~~~~I~~l~~~~p~-~~IGAGTV-------l~~----~~a   80 (212)
T PRK05718         16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLR---TPAALEAIRLIAKEVPE-ALIGAGTV-------LNP----EQL   80 (212)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecC---CccHHHHHHHHHHHCCC-CEEEEeec-------cCH----HHH
Confidence            4556688999999999999988889999999943   22223456666654432 32221111       122    346


Q ss_pred             HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      +.+++.|++|+=.--.. ++.++.   .++.+.-+|=..    .||+  |    +.++.++|+|++|+
T Consensus        81 ~~a~~aGA~FivsP~~~-~~vi~~---a~~~~i~~iPG~----~Tpt--E----i~~a~~~Ga~~vKl  134 (212)
T PRK05718         81 AQAIEAGAQFIVSPGLT-PPLLKA---AQEGPIPLIPGV----STPS--E----LMLGMELGLRTFKF  134 (212)
T ss_pred             HHHHHcCCCEEECCCCC-HHHHHH---HHHcCCCEeCCC----CCHH--H----HHHHHHCCCCEEEE
Confidence            77889999997543322 233322   333444444222    2443  2    55677899999999

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=89.27  E-value=3.7  Score=41.19  Aligned_cols=80  Identities=14%  Similarity=-0.039  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhcCCCEEEEEecC-------CC---CC-CC-------------hhHHHHHHhcCCC-cEEEEeccCC-C--
Q 015310           25 VLSNMYQAKAEGADVVEIRLDC-------IN---NF-QP-------------GKDLEIILTKKPL-PVLIVYRPKW-A--   76 (409)
Q Consensus        25 ~~~~~~~~~~~~aD~vElRlD~-------l~---~~-~~-------------~~~l~~l~~~~~~-PiI~T~R~~~-e--   76 (409)
                      +...++++.+.|.|.||+-.-+       |.   +. .+             .+.++.+++..+. |  +++|-.. |  
T Consensus       154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~--v~vRis~~~~~  231 (338)
T cd02933         154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADR--VGIRLSPFGTF  231 (338)
T ss_pred             HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCc--eEEEECccccC
Confidence            3444566677899999998775       11   11 11             1334445544433 5  5566432 2  


Q ss_pred             -CCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310           77 -GGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        77 -GG~~~~~~~~~~~ll~~~~~~g~dyvDiEl  106 (409)
                       ||.+..+.++..++.+.+.+.|+|||+|-.
T Consensus       232 ~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~  262 (338)
T cd02933         232 NDMGDSDPEATFSYLAKELNKRGLAYLHLVE  262 (338)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Confidence             333345678889999999999999999843

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=89.24  E-value=0.43  Score=49.74  Aligned_cols=34  Identities=18%  Similarity=0.272  Sum_probs=31.0

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      -.|+|+|+|.+|.++|..|++.|.+|.|+.|..+
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~   73 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKLD   73 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            4699999999999999999999999999998743

>TIGR01496 DHPS dihydropteroate synthase

Probab=89.20  E-value=15  Score=35.37  Aligned_cols=140  Identities=16%  Similarity=0.292  Sum_probs=79.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCC----CCCCChhH---HHHHH----hcCCCcEEEEeccCCCCCCCCCCHHHHH
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCI----NNFQPGKD---LEIIL----TKKPLPVLIVYRPKWAGGLYEGDEHKRL   88 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l----~~~~~~~~---l~~l~----~~~~~PiI~T~R~~~eGG~~~~~~~~~~   88 (409)
                      .+.+++++.+++..+.|||+|.+=...-    ...++.++   +..++    ...+.|+-+-  |            ..-
T Consensus        20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD--T------------~~~   85 (257)
T TIGR01496        20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD--T------------YRA   85 (257)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe--C------------CCH
Confidence            3568888888888899999998832211    11122223   22222    2236665332  1            334


Q ss_pred             HHHHHHHHcCCcEE-EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCH---------------hHHHHHHHHHHHc
Q 015310           89 EALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE---------------EDLGYLVSRMQAT  152 (409)
Q Consensus        89 ~ll~~~~~~g~dyv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~---------------~~l~~~~~~~~~~  152 (409)
                      +.++++++.|+++| |+.....++..+ +  .++.+..+|+- |+ .++|..               +.+.+.++++.+.
T Consensus        86 ~vi~~al~~G~~iINsis~~~~~~~~~-l--~~~~~~~vV~m-~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  160 (257)
T TIGR01496        86 EVARAALEAGADIINDVSGGQDPAMLE-V--AAEYGVPLVLM-HM-RGTPRTMQENPHYEDVVEEVLRFLEARAEELVAA  160 (257)
T ss_pred             HHHHHHHHcCCCEEEECCCCCCchhHH-H--HHHcCCcEEEE-eC-CCCCcccccCCCcccHHHHHHHHHHHHHHHHHHc
Confidence            57788888998875 444433333333 2  23467888884 43 234422               2255667778888


Q ss_pred             CCCEEEEEeec-----CCHhHHHHHHHHhcc
Q 015310          153 GADIIKLVFSV-----NDITEIARIFQLLSH  178 (409)
Q Consensus       153 gaDivKia~~~-----~~~~D~~~ll~~~~~  178 (409)
                      |-+.-++..=|     ++.++.+.+++.+..
T Consensus       161 Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~  191 (257)
T TIGR01496       161 GVAAERIILDPGIGFGKTPEHNLELLKHLEE  191 (257)
T ss_pred             CCCHHHEEEECCCCcccCHHHHHHHHHHHHH
Confidence            87544554433     466777777766543

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>PRK08605 D-lactate dehydrogenase; Validated

Probab=89.18  E-value=0.57  Score=46.84  Aligned_cols=40  Identities=25%  Similarity=0.235  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHH-HhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGA-KSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL-~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|..|++++..| ...|++|+.++|+..+
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~  182 (332)
T PRK08605        142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNA  182 (332)
T ss_pred             ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccH
Confidence            357899999999999999999998 5578899999987643

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=89.14  E-value=16  Score=35.34  Aligned_cols=199  Identities=17%  Similarity=0.105  Sum_probs=109.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC--hhHHHHHHhcC--CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (409)
                      +.++.+.-++.+.+.|+|.||+=.   ...++  .+.++.+++..  +.++..-.|....+=. ...+    .-++.+++
T Consensus        18 s~e~k~~i~~~L~~~Gv~~IE~G~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~----~~~~~a~~   89 (273)
T cd07941          18 SVEDKLRIARKLDELGVDYIEGGW---PGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVK-AEED----PNLQALLE   89 (273)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecC---CcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCC-ccch----HHHHHHHh
Confidence            345555556666678999999822   11122  22344443332  5667777776544322 1111    34667888


Q ss_pred             cCCcEEEEeccCcc------------ch---HHHHH-hccCCCcEEEEec-cCCCCCC-CHhHHHHHHHHHHHcCCCEEE
Q 015310           97 LGADYVDFELKVAS------------NI---LGKQY-SSHQSGTRFIVSC-NLDCETP-SEEDLGYLVSRMQATGADIIK  158 (409)
Q Consensus        97 ~g~dyvDiEl~~~~------------~~---~~~l~-~~~~~~~kiI~S~-H~f~~tp-~~~~l~~~~~~~~~~gaDivK  158 (409)
                      .|++.|.+-....+            +.   +.+.+ .++..+.++.++. |.|+.+. +.+.+.++++++.+.|+|.+-
T Consensus        90 ~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~  169 (273)
T cd07941          90 AGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLV  169 (273)
T ss_pred             CCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEE
Confidence            99999888544321            11   12233 3556677776633 3334433 356688999999999999887


Q ss_pred             EEeec--CCHhHHHHHHHHhccC-C-CCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhh
Q 015310          159 LVFSV--NDITEIARIFQLLSHC-Q-VPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQT  228 (409)
Q Consensus       159 ia~~~--~~~~D~~~ll~~~~~~-~-~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~  228 (409)
                      ++=+.  .++.++.++++.+.+. + .|+=.     ++||-   ..=+..-.-|..+.-+++.. +--.|+.+++++...
T Consensus       170 l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~---An~laA~~aGa~~id~s~~GlGeraGn~~~e~~~~~  246 (273)
T cd07941         170 LCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAV---ANSLAAVEAGATQVQGTINGYGERCGNANLCSIIPN  246 (273)
T ss_pred             EecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHH---HHHHHHHHcCCCEEEEeccccccccccccHHHHHHH
Confidence            77332  3577777777765432 2 33321     12222   22222222344333333332 244788888888776


Q ss_pred             hh
Q 015310          229 YK  230 (409)
Q Consensus       229 ~~  230 (409)
                      ++
T Consensus       247 L~  248 (273)
T cd07941         247 LQ  248 (273)
T ss_pred             HH
Confidence            65

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=88.91  E-value=2.2  Score=41.17  Aligned_cols=143  Identities=17%  Similarity=0.283  Sum_probs=82.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEE-----EecCCCCCCChhHHHHH-------HhcCCCcEEEEeccCCCCCCCCCCHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEI-----RLDCINNFQPGKDLEII-------LTKKPLPVLIVYRPKWAGGLYEGDEHKRL   88 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vEl-----RlD~l~~~~~~~~l~~l-------~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   88 (409)
                      +.++++..+++..+.|||+|.+     |.+. ...++.+++.++       +...+.|+  .+            +..+-
T Consensus        22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~-~~i~~~~E~~rl~~~v~~i~~~~~~pl--SI------------DT~~~   86 (257)
T cd00739          22 SLDKAVAHAEKMIAEGADIIDIGGESTRPGA-DPVSVEEELERVIPVLEALRGELDVLI--SV------------DTFRA   86 (257)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCC-CCCCHHHHHHHHHHHHHHHHhcCCCcE--EE------------eCCCH
Confidence            5688888888888999999988     4432 122223334333       22224553  32            23455


Q ss_pred             HHHHHHHHcCCcEEE-EeccCc-cchHHHHHhccCCCcEEEEeccCCCCCCCH-----------hH----HHHHHHHHHH
Q 015310           89 EALHLAEDLGADYVD-FELKVA-SNILGKQYSSHQSGTRFIVSCNLDCETPSE-----------ED----LGYLVSRMQA  151 (409)
Q Consensus        89 ~ll~~~~~~g~dyvD-iEl~~~-~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~-----------~~----l~~~~~~~~~  151 (409)
                      +.++++++.|+++|- |..... ++..+ ++  ++.+..+|+ .|+ .++|..           ++    +.+.++.+.+
T Consensus        87 ~v~e~al~~G~~iINdisg~~~~~~~~~-l~--~~~~~~vV~-m~~-~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  161 (257)
T cd00739          87 EVARAALEAGADIINDVSGGSDDPAMLE-VA--AEYGAPLVL-MHM-RGTPKTMQENPYYEDVVDEVLSFLEARLEAAES  161 (257)
T ss_pred             HHHHHHHHhCCCEEEeCCCCCCChHHHH-HH--HHcCCCEEE-ECC-CCCCcccccCCCcccHHHHHHHHHHHHHHHHHH
Confidence            788899999988764 665543 22322 22  345778888 454 455532           22    4566677888


Q ss_pred             cCCCEEEEEe-----ecCCHhHHHHHHHHhc---cCCCCE
Q 015310          152 TGADIIKLVF-----SVNDITEIARIFQLLS---HCQVPI  183 (409)
Q Consensus       152 ~gaDivKia~-----~~~~~~D~~~ll~~~~---~~~~p~  183 (409)
                      .|-+-=||..     +.++.+.+..+++.+.   +.+.|+
T Consensus       162 ~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pi  201 (257)
T cd00739         162 AGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPV  201 (257)
T ss_pred             cCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcE
Confidence            8864223332     4456666666665543   335664

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=88.88  E-value=39  Score=36.70  Aligned_cols=210  Identities=13%  Similarity=0.072  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 015310           22 VEQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (409)
Q Consensus        22 ~~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (409)
                      .++++.-+...-+.|...+|.=    +|-   +...+|.+.+..+++.. +.|+-.-+|..+==|..+.+++-....++.
T Consensus        25 t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~  104 (596)
T PRK14042         25 TEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKL  104 (596)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHH
Confidence            3566666666666788888853    442   11225566777777554 778888888777777777788777788999


Q ss_pred             HHHcCCcEEEE--eccCccchHHHHHhccCCCcEEEEe--ccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015310           94 AEDLGADYVDF--ELKVASNILGKQYSSHQSGTRFIVS--CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DIT  167 (409)
Q Consensus        94 ~~~~g~dyvDi--El~~~~~~~~~l~~~~~~~~kiI~S--~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~~  167 (409)
                      +.+.|.|.+=|  .++..+.....+..+++.|..+.++  |-. +..=+.+.+.+..+++.+.|||.+=|+=|+-  ++.
T Consensus       105 a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~-sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~  183 (596)
T PRK14042        105 AVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT-SPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPT  183 (596)
T ss_pred             HHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC-CCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHH
Confidence            99999887665  2222222222222344455555554  422 1111457799999999999999988886665  588


Q ss_pred             HHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhhc
Q 015310          168 EIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKVE  232 (409)
Q Consensus       168 D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~~  232 (409)
                      ++.++.+.+.+. +.|+-.=  +.--+|..+=+..-.-|....-+++.. +--+||++.+++...++..
T Consensus       184 ~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv~~L~~~  252 (596)
T PRK14042        184 VTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALVAALTDT  252 (596)
T ss_pred             HHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHHHHHHhc
Confidence            888888876543 5554211  222233344444444454443333332 2336999999988777643

>PLN02740 Alcohol dehydrogenase-like

Probab=88.88  E-value=0.71  Score=46.66  Aligned_cols=40  Identities=38%  Similarity=0.528  Sum_probs=35.2

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|++++|+|+|+.|.+++..+..+|+ +|++++++.+|.+.
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~  238 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEK  238 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHH
Confidence            47899999999999999999999999 79999988777554

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=88.84  E-value=0.62  Score=47.55  Aligned_cols=38  Identities=29%  Similarity=0.350  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+.||++.|+|.|.+|+.++..|..+|++|.++++..
T Consensus       112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~  149 (381)
T PRK00257        112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPR  149 (381)
T ss_pred             CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcc
Confidence            56889999999999999999999999999999998753

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=88.79  E-value=0.48  Score=47.99  Aligned_cols=37  Identities=32%  Similarity=0.506  Sum_probs=33.0

Q ss_pred             EEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|.|+|||-+|.|.+|+|.+.|-+|.|+.||...-+.
T Consensus        47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdR   83 (509)
T KOG1298|consen   47 DVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDR   83 (509)
T ss_pred             cEEEECCcchHHHHHHHHhhCCcEEEEEecccccchH
Confidence            4999999999999999999999999999999665443

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.75  E-value=0.91  Score=42.40  Aligned_cols=41  Identities=39%  Similarity=0.462  Sum_probs=35.2

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ++.+++|.|+|+++++++..+...|.+|+++.++.++.+.+
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~  174 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELA  174 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence            57899999999999999988888999999999987765543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06487 glycerate dehydrogenase; Provisional

Probab=88.72  E-value=0.68  Score=46.01  Aligned_cols=36  Identities=36%  Similarity=0.444  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .+.||++.|+|.|..|++++.-|.-+|++|..++|.
T Consensus       145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~  180 (317)
T PRK06487        145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP  180 (317)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence            578999999999999999999999999999999986

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=88.71  E-value=16  Score=33.85  Aligned_cols=84  Identities=23%  Similarity=0.260  Sum_probs=51.6

Q ss_pred             EEEeeccCCHHHHHHHHHHHHhcCCCEEE---EEecCCCCCCChhHHHHHH--hcCCCcEEEEeccCCCCCCCCCCHHHH
Q 015310           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVE---IRLDCINNFQPGKDLEIIL--TKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (409)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~aD~vE---lRlD~l~~~~~~~~l~~l~--~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (409)
                      +..|..+-+...+..-++   ..|+|++-   ++.+-+.....  ....+.  ...+.|+++.+..        .+.++.
T Consensus         3 ~~aPm~~~~~~~fR~l~~---~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~qi~g--------~~~~~~   69 (231)
T cd02801           3 ILAPMVGVTDLPFRLLCR---RYGADLVYTEMISAKALLRGNR--KRLRLLTRNPEERPLIVQLGG--------SDPETL   69 (231)
T ss_pred             EeCCCCCCcCHHHHHHHH---HHCCCEEEecCEEEhhhhhcCH--HHHHhhccCccCCCEEEEEcC--------CCHHHH
Confidence            445666655444444333   34688886   56655443222  112222  2348899998852        256777


Q ss_pred             HHHHHHHHHcCCcEEEEeccCc
Q 015310           88 LEALHLAEDLGADYVDFELKVA  109 (409)
Q Consensus        88 ~~ll~~~~~~g~dyvDiEl~~~  109 (409)
                      .+.-+.+.+.|+|.|||-...+
T Consensus        70 ~~aa~~~~~aG~d~ieln~g~p   91 (231)
T cd02801          70 AEAAKIVEELGADGIDLNMGCP   91 (231)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCC
Confidence            8888888888999999977653

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=88.70  E-value=0.65  Score=51.33  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=34.2

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      ++|.|||||-+|+.|++.++..|++|++++++++..+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~  350 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALD  350 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence            6899999999999999999999999999999987654

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=88.66  E-value=0.79  Score=45.70  Aligned_cols=41  Identities=10%  Similarity=0.029  Sum_probs=34.7

Q ss_pred             CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la  408 (409)
                      .+++.|+|+|..|++-+.++... .. +|+|+||+.++++.++
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~  170 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFA  170 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHH
Confidence            47899999999999988777654 35 8999999999998764

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=88.62  E-value=0.8  Score=46.04  Aligned_cols=39  Identities=36%  Similarity=0.337  Sum_probs=34.3

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      +.+|+|+|+|..|..++..+...|+ +|++++++++|.+.
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~  208 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLEL  208 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHH
Confidence            3489999999999999888999998 89999999888653

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=88.62  E-value=0.73  Score=45.67  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+.||++.|+|-|..||+++.-+.-+|++|..++|+.
T Consensus       142 ~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~  178 (311)
T PRK08410        142 EIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG  178 (311)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc
Confidence            5789999999999999999999999999999999864

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=88.58  E-value=0.92  Score=44.92  Aligned_cols=39  Identities=26%  Similarity=0.250  Sum_probs=33.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      .|.+++|.|+|+.+.+++..+...|++|+++.++.+|.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~  203 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARR  203 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence            478999999999999988888888998888888877754

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=88.52  E-value=25  Score=34.12  Aligned_cols=143  Identities=15%  Similarity=0.204  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEe----cCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310           22 VEQVLSNMYQAKAEGADVVEIRL----DCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (409)
Q Consensus        22 ~~e~~~~~~~~~~~~aD~vElRl----D~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (409)
                      .++-++-++.+.+.|.|.||.=-    ..++...+.+++.+.+....-.-+..++.         ..    +=++.+++.
T Consensus        19 ~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~~~~---------~~----~dv~~A~~~   85 (274)
T cd07938          19 TEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSALVP---------NL----RGAERALAA   85 (274)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEEECC---------CH----HHHHHHHHc
Confidence            34444455566678999999861    11221222222222221111122333331         11    125788899


Q ss_pred             CCcEEEEeccCccc---------------hHHH-HHhccCCCcEEEE------eccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015310           98 GADYVDFELKVASN---------------ILGK-QYSSHQSGTRFIV------SCNLDCETPSEEDLGYLVSRMQATGAD  155 (409)
Q Consensus        98 g~dyvDiEl~~~~~---------------~~~~-l~~~~~~~~kiI~------S~H~f~~tp~~~~l~~~~~~~~~~gaD  155 (409)
                      |++.|.+-....+.               ...+ +..+++.+.++.+      +..+...+ +.+.+.+.++++.+.|+|
T Consensus        86 g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~~~~~~Ga~  164 (274)
T cd07938          86 GVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV-PPERVAEVAERLLDLGCD  164 (274)
T ss_pred             CcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC-CHHHHHHHHHHHHHcCCC
Confidence            99999988766531               1111 2235566766643      22222222 467899999999999999


Q ss_pred             EEEEEeecC--CHhHHHHHHHHhcc
Q 015310          156 IIKLVFSVN--DITEIARIFQLLSH  178 (409)
Q Consensus       156 ivKia~~~~--~~~D~~~ll~~~~~  178 (409)
                      .+.++=+.-  ++.++.++.+.+.+
T Consensus       165 ~i~l~DT~G~~~P~~v~~lv~~l~~  189 (274)
T cd07938         165 EISLGDTIGVATPAQVRRLLEAVLE  189 (274)
T ss_pred             EEEECCCCCccCHHHHHHHHHHHHH
Confidence            999985543  57777777776543

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>PRK09414 glutamate dehydrogenase; Provisional

Probab=88.46  E-value=1.4  Score=45.84  Aligned_cols=53  Identities=26%  Similarity=0.376  Sum_probs=41.6

Q ss_pred             CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEE-e
Q 015310          337 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF-D  398 (409)
Q Consensus       337 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~-n  398 (409)
                      .-++|...+++..+.+.         +.+++|++++|.|-|.+|+.++..|.+.|++|+.+ +
T Consensus       210 aTg~Gv~~~~~~~~~~~---------~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD  263 (445)
T PRK09414        210 ATGYGLVYFAEEMLKAR---------GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD  263 (445)
T ss_pred             cccHHHHHHHHHHHHhc---------CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            33467777777766532         25689999999999999999999999999976544 5

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=88.45  E-value=0.93  Score=44.47  Aligned_cols=41  Identities=17%  Similarity=0.250  Sum_probs=38.3

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .+++=-||-|-+|.+.+..|.+.|++|+|+||+.++.+++.
T Consensus        35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~   75 (327)
T KOG0409|consen   35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQ   75 (327)
T ss_pred             cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHH
Confidence            46788999999999999999999999999999999998875

>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R

Probab=88.43  E-value=11  Score=38.16  Aligned_cols=106  Identities=16%  Similarity=0.102  Sum_probs=70.7

Q ss_pred             HHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeccCcc------chHHH---HH-hc-cCCC
Q 015310           56 LEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKVAS------NILGK---QY-SS-HQSG  123 (409)
Q Consensus        56 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv-DiEl~~~~------~~~~~---l~-~~-~~~~  123 (409)
                      +.+++...+.|++-|.=.. . |.   +.+++-++....+.-|+|.| |-|.-...      +.++.   .+ .+ .+.+
T Consensus       117 ~R~~lgv~~rPl~~tiiKP-~-GL---~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG  191 (364)
T cd08210         117 LRALLGIPERPLLCSALKP-Q-GL---SAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETG  191 (364)
T ss_pred             HHHHhCCCCCceEEEEecc-c-cC---CHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcC
Confidence            3344444588999988543 4 54   78899999999999899998 77754432      22211   12 11 2334


Q ss_pred             cEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHH
Q 015310          124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEI  169 (409)
Q Consensus       124 ~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~  169 (409)
                      .+++....-   |-+.+|+.++.+.+++.|++.+-+.....-.+-+
T Consensus       192 ~~~~y~~Ni---ta~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~  234 (364)
T cd08210         192 GRTLYAPNV---TGPPTQLLERARFAKEAGAGGVLIAPGLTGLDTF  234 (364)
T ss_pred             CcceEEEec---CCCHHHHHHHHHHHHHcCCCEEEeecccchHHHH
Confidence            455555443   2224699999999999999999998887766633

rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=88.40  E-value=0.77  Score=46.79  Aligned_cols=37  Identities=24%  Similarity=0.382  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..+.||++.|+|.|.+|+.++.-|..+|++|.++++.
T Consensus       112 ~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~  148 (378)
T PRK15438        112 FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPP  148 (378)
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCc
Confidence            5789999999999999999999999999999999874

>PRK14852 hypothetical protein; Provisional

Probab=88.35  E-value=0.5  Score=53.37  Aligned_cols=106  Identities=8%  Similarity=0.043  Sum_probs=65.3

Q ss_pred             cEEEEeccCCCCC----CCHhH-HHHHHHHHHHcC---CCEEEEEeecCCHhHH--HHHHHHh------ccCCCCEEEEE
Q 015310          124 TRFIVSCNLDCET----PSEED-LGYLVSRMQATG---ADIIKLVFSVNDITEI--ARIFQLL------SHCQVPIIAYS  187 (409)
Q Consensus       124 ~kiI~S~H~f~~t----p~~~~-l~~~~~~~~~~g---aDivKia~~~~~~~D~--~~ll~~~------~~~~~p~i~~~  187 (409)
                      -.+|.|.|..-.+    ++.++ -...++...+.|   |++-|+|+-+....-.  .-++++.      ...+-=+|+++
T Consensus        84 ~~~l~T~t~~~ds~~~Gl~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~Vn  163 (989)
T PRK14852         84 HDVLCTLTHIPDSGLFGLPMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVN  163 (989)
T ss_pred             CcEEEEEEEecCCcccCcCHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            4566666643221    22332 234456666667   5788888754433211  1122221      23344577777


Q ss_pred             cCccchhhhhhc-CCCCCccccccCCCCCCCCCCCHHHHHhhh
Q 015310          188 VGERGLVSQLLS-PKFNGALVYGSLKGTPVLGLPTVESLRQTY  229 (409)
Q Consensus       188 MG~~G~~SRi~~-~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~  229 (409)
                      ==..+-+.|+++ ..+|..=+|..++.|..--.+++.++.+.+
T Consensus       164 PkH~~FY~r~l~f~~ig~~r~~p~VnaPAvll~~dl~~~~~~~  206 (989)
T PRK14852        164 PKHVKFYTDIFLFKPFGEVRHYDTVDAPAVALRIDLHEAMDEL  206 (989)
T ss_pred             cchHHHHHHHhCCccccccccCCCCCcchhheecCHHHHHHHH
Confidence            777889999998 788998888888766556778888877665

>TIGR01496 DHPS dihydropteroate synthase

Probab=88.34  E-value=3.5  Score=39.70  Aligned_cols=104  Identities=17%  Similarity=0.160  Sum_probs=60.6

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE--eccCcc--------c--hHHHHHhccCCCcEEEEeccCCCCCCCHh
Q 015310           73 PKWAGGLYEGDEHKRLEALHLAEDLGADYVDF--ELKVAS--------N--ILGKQYSSHQSGTRFIVSCNLDCETPSEE  140 (409)
Q Consensus        73 ~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDi--El~~~~--------~--~~~~l~~~~~~~~kiI~S~H~f~~tp~~~  140 (409)
                      +-.+||.+. +.++-.+..+..++.|+++|||  |-..+.        +  .+..++..-+..+.+.+|.|.    ++.+
T Consensus        12 SF~dg~~~~-~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT----~~~~   86 (257)
T TIGR01496        12 SFSDGGRFL-SVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT----YRAE   86 (257)
T ss_pred             CCCCCCCCC-CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC----CCHH
Confidence            446788874 4455555666667899999999  333221        1  122233221233356788884    3444


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcC
Q 015310          141 DLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG  189 (409)
Q Consensus       141 ~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG  189 (409)
                      .+.+    +.+.|+|++==+..-+ .++.   +.+..+.+.|+|.|.+.
T Consensus        87 vi~~----al~~G~~iINsis~~~-~~~~---~~l~~~~~~~vV~m~~~  127 (257)
T TIGR01496        87 VARA----ALEAGADIINDVSGGQ-DPAM---LEVAAEYGVPLVLMHMR  127 (257)
T ss_pred             HHHH----HHHcCCCEEEECCCCC-Cchh---HHHHHHcCCcEEEEeCC
Confidence            4444    4445999877655443 3334   44456678899998874

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=88.34  E-value=0.99  Score=44.10  Aligned_cols=41  Identities=22%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+.+++|+|+|+.+++++..+..+|++|+++.++.++.+.+
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~  202 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELA  202 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46789999999999999888899999999999998876544

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=88.30  E-value=0.88  Score=48.43  Aligned_cols=37  Identities=30%  Similarity=0.432  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..+.||++.|+|-|.+|++++..|..+|++|+.++|.
T Consensus       134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~  170 (525)
T TIGR01327       134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPY  170 (525)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence            4578999999999999999999999999999999984

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=88.30  E-value=0.78  Score=46.03  Aligned_cols=45  Identities=36%  Similarity=0.514  Sum_probs=40.8

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .-+.||.++|.|-|-.||.++..|..+|++|.|..-++-+|-+-+
T Consensus       205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~  249 (420)
T COG0499         205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAA  249 (420)
T ss_pred             eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHh
Confidence            457899999999999999999999999999999999998887654

>PLN02256 arogenate dehydrogenase

Probab=88.29  E-value=0.98  Score=44.64  Aligned_cols=36  Identities=19%  Similarity=0.085  Sum_probs=32.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ++.++.|+|.|.+|.+++.+|.+.|.+|++++|+..
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~   70 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY   70 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH
Confidence            567899999999999999999999989999999864

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=88.26  E-value=0.95  Score=44.68  Aligned_cols=41  Identities=29%  Similarity=0.259  Sum_probs=35.3

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|.+++|.|+ |+.|.+++..+..+|++|+.+.++.++.+.+
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~  192 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLL  192 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            5789999997 9999999988888999988888888876654

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN02463 lycopene beta cyclase

Probab=88.23  E-value=0.57  Score=48.86  Aligned_cols=33  Identities=30%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      -.++|+|+|.+|.++|..|++.|.+|.|+.+.+
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~   61 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP   61 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence            369999999999999999999999999998864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=88.13  E-value=0.68  Score=48.70  Aligned_cols=35  Identities=29%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++++|+|+|.+|-+++..|.+.|.+|+|+.+..
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~  176 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED  176 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            46899999999999999999999999999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=88.08  E-value=7.3  Score=36.95  Aligned_cols=86  Identities=10%  Similarity=0.086  Sum_probs=53.4

Q ss_pred             EeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCcc-------chHHHHHhccCC--CcEEEEeccCCCCCCCHh
Q 015310           70 VYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS-------NILGKQYSSHQS--GTRFIVSCNLDCETPSEE  140 (409)
Q Consensus        70 T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~-------~~~~~l~~~~~~--~~kiI~S~H~f~~tp~~~  140 (409)
                      |+|.-.|.-.+..+.++..++++.+.+.|+++|++=.....       +..+.+....+.  +.++.+  +.   +..  
T Consensus         4 tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~--l~---~~~--   76 (265)
T cd03174           4 TLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQA--LV---RNR--   76 (265)
T ss_pred             CCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEE--Ec---cCc--
Confidence            66644443334568899999999999999999887654432       222222222222  344422  11   111  


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeecC
Q 015310          141 DLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus       141 ~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                        .+.++++.+.|.|.+.+.....
T Consensus        77 --~~~i~~a~~~g~~~i~i~~~~s   98 (265)
T cd03174          77 --EKGIERALEAGVDEVRIFDSAS   98 (265)
T ss_pred             --hhhHHHHHhCCcCEEEEEEecC
Confidence              5567888888999999998777

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=88.05  E-value=17  Score=36.53  Aligned_cols=162  Identities=15%  Similarity=0.152  Sum_probs=88.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHH-HHhcCCCcEEEEecc----CCCCCCCCCCHHHHHHHHHH
Q 015310           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEI-ILTKKPLPVLIVYRP----KWAGGLYEGDEHKRLEALHL   93 (409)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~-l~~~~~~PiI~T~R~----~~eGG~~~~~~~~~~~ll~~   93 (409)
                      ...++++...+.+.+..++|.|=     ++..   --+.. ..+..+.++|+++-.    ....|.  .+...-.--.+.
T Consensus        45 ~~~l~~~K~lv~~~l~~~asaIL-----ld~~---yG~~a~~~~~~~~GLil~~e~tg~d~t~~gr--~~~~~~~~sve~  114 (340)
T PRK12858         45 YTDLVDFKLAVSEALTPYASAIL-----LDPE---YGLPAAKVRDPNCGLLLSYEKTGYDATAPGR--LPDLLDNWSVRR  114 (340)
T ss_pred             hhhHHHHHHHHHHHHhhCCCEEE-----Eccc---cChhhhcccCCCCCeEEEecccccccCCCCC--CccccccccHHH
Confidence            34667777777777777888872     2210   00111 223357889988631    111121  222111112467


Q ss_pred             HHHcCCcEEEEeccCccc-----------hHHHHH-hccCCCcEEEE---eccCCCCC--------CCHhHHHHHHHHHH
Q 015310           94 AEDLGADYVDFELKVASN-----------ILGKQY-SSHQSGTRFIV---SCNLDCET--------PSEEDLGYLVSRMQ  150 (409)
Q Consensus        94 ~~~~g~dyvDiEl~~~~~-----------~~~~l~-~~~~~~~kiI~---S~H~f~~t--------p~~~~l~~~~~~~~  150 (409)
                      +.++|+|.|=+=+....+           .+.++. ..++.+..+++   +|=.-...        -..+-+....+...
T Consensus       115 a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~  194 (340)
T PRK12858        115 IKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFS  194 (340)
T ss_pred             HHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHh
Confidence            889999977665443211           233444 35677888777   55321111        11234666677777


Q ss_pred             H--cCCCEEEEEeecC--------------CHhHHHHHHHH-hccCCCCEEEEEcCc
Q 015310          151 A--TGADIIKLVFSVN--------------DITEIARIFQL-LSHCQVPIIAYSVGE  190 (409)
Q Consensus       151 ~--~gaDivKia~~~~--------------~~~D~~~ll~~-~~~~~~p~i~~~MG~  190 (409)
                      +  +|+||+|+-+..+              +.++....++- ...+..|+|..+=|.
T Consensus       195 ~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~  251 (340)
T PRK12858        195 KPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV  251 (340)
T ss_pred             hhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC
Confidence            4  9999999987644              44555454433 333577887776664

>PLN02985 squalene monooxygenase

Probab=88.02  E-value=0.64  Score=49.33  Aligned_cols=34  Identities=32%  Similarity=0.573  Sum_probs=31.2

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ...|+|+|||-+|.+++.+|++.|.+|+|+.|+.
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            3479999999999999999999999999999974

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=88.02  E-value=18  Score=35.45  Aligned_cols=86  Identities=12%  Similarity=0.064  Sum_probs=56.6

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhc---CCCEEEEEecCCCC-----C-CChhHHHH----HHhcCCCcEEEEeccCC
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAE---GADVVEIRLDCINN-----F-QPGKDLEI----ILTKKPLPVLIVYRPKW   75 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~---~aD~vElRlD~l~~-----~-~~~~~l~~----l~~~~~~PiI~T~R~~~   75 (409)
                      ++| +.++|.+. .+|+.+.++++...   ++|++|+=+=+=..     . .+.+.+.+    +++..++|+++-+|...
T Consensus        91 ~~p-vivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~  168 (294)
T cd04741          91 AKP-FFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT  168 (294)
T ss_pred             CCe-EEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence            345 56999998 99998888877654   69999998865321     1 11223333    33446899999998742


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHc--CCcEEE
Q 015310           76 AGGLYEGDEHKRLEALHLAEDL--GADYVD  103 (409)
Q Consensus        76 eGG~~~~~~~~~~~ll~~~~~~--g~dyvD  103 (409)
                             +.++..++.+.+.+.  |++.|-
T Consensus       169 -------~~~~~~~~a~~l~~~~~G~~gi~  191 (294)
T cd04741         169 -------DPAQFDTLAEALNAFACPISFIT  191 (294)
T ss_pred             -------CHHHHHHHHHHHhccccCCcEEE
Confidence                   444556666666666  666554

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=88.02  E-value=0.98  Score=45.42  Aligned_cols=40  Identities=30%  Similarity=0.469  Sum_probs=35.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+++|.|+|+.|.+++..+..+|+ +|++++++.+|.+.
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~  225 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFEL  225 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence            47899999999999999998999999 89999988877654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=88.01  E-value=0.77  Score=50.72  Aligned_cols=39  Identities=28%  Similarity=0.403  Sum_probs=35.0

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      -++|.|||||-+|+.|++.++..|.+|++++++.+..+.
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~  351 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDL  351 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence            368999999999999999999999999999999876543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.91  E-value=0.97  Score=44.81  Aligned_cols=39  Identities=33%  Similarity=0.373  Sum_probs=34.5

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~  405 (409)
                      .|.+|||+|||..|......+.-.|+ +|.+++-.+.|.+
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle  208 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLE  208 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHH
Confidence            47899999999999999999999999 9999988766643

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=87.85  E-value=0.63  Score=50.87  Aligned_cols=35  Identities=31%  Similarity=0.561  Sum_probs=32.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +..+|+|+|+|-+|.+.|.+|.+.|++++|+.|..
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            34679999999999999999999999999999975

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=87.84  E-value=2  Score=41.07  Aligned_cols=49  Identities=33%  Similarity=0.407  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV  395 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~  395 (409)
                      ++|...+++..+...+        ..+++|++++|-|.|.+|+.++..|.++|++|.
T Consensus        11 g~GV~~~~~~~~~~~~--------~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv   59 (244)
T PF00208_consen   11 GYGVAYAIEAALEHLG--------GDSLEGKRVAIQGFGNVGSHAARFLAELGAKVV   59 (244)
T ss_dssp             HHHHHHHHHHHHHHTT--------CHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHHHHcC--------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEE
Confidence            4677777777665322        135889999999999999999999999998644

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=87.75  E-value=1.2  Score=43.54  Aligned_cols=37  Identities=30%  Similarity=0.449  Sum_probs=30.8

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhC----CC-------eEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSR----GA-------RVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~----G~-------~i~v~nR~  400 (409)
                      .+++..+++++|||.+|-+++.-|...    |.       +|++++|.
T Consensus        21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~   68 (279)
T cd05312          21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK   68 (279)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence            567788999999999999998877665    76       69998875

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=87.73  E-value=0.92  Score=46.30  Aligned_cols=39  Identities=21%  Similarity=0.191  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..++++++|.|+ |..|+.++..|.+.|.+|+++.|+.++
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~   96 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSG   96 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhh
Confidence            345789999997 889999999999999999999998754

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=87.73  E-value=6.2  Score=36.94  Aligned_cols=197  Identities=13%  Similarity=0.122  Sum_probs=117.3

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHH
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKR   87 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~   87 (409)
                      ..|++=|.|-..+++++.+.++++... +|++|.--=++...-- +.++.+++. .+.+++.-..+-.-|+.        
T Consensus         2 ~~p~LQvALD~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~eG~-~aV~~lr~~~pd~~IvAD~Kt~D~G~~--------   71 (217)
T COG0269           2 SPPLLQVALDLLDLEEAIEIAEEVADY-VDIIEVGTPLIKAEGM-RAVRALRELFPDKIIVADLKTADAGAI--------   71 (217)
T ss_pred             CCcceEeeecccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHhhH-HHHHHHHHHCCCCeEEeeeeecchhHH--------
Confidence            467888999999999999999988666 9999987666654322 356666654 47888888877644332        


Q ss_pred             HHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015310           88 LEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI  166 (409)
Q Consensus        88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~  166 (409)
                        ..+++.+.|+|++-|=--.+.+-+...+ .+++.+..+.+=--   +.++   +.+..+..+++|.|++=+=.-    
T Consensus        72 --e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~---~~~~---~~~~~~~l~~~gvd~~~~H~g----  139 (217)
T COG0269          72 --EARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLI---GVWD---PEQRAKWLKELGVDQVILHRG----  139 (217)
T ss_pred             --HHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEee---cCCC---HHHHHHHHHHhCCCEEEEEec----
Confidence              2467888999998875444443333333 45556655544322   2222   344444454567766533221    


Q ss_pred             hHHHHHHHHhccCCCCEEEEE--cCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhccccccceEEeee
Q 015310          167 TEIARIFQLLSHCQVPIIAYS--VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLI  244 (409)
Q Consensus       167 ~D~~~ll~~~~~~~~p~i~~~--MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~i~~~~~~~~vi  244 (409)
                      -|..            ....+  -..+..+-++...  |..+        +--|-++.+++..+...   .   ....++
T Consensus       140 ~D~q------------~~G~~~~~~~l~~ik~~~~~--g~~v--------AVaGGI~~~~i~~~~~~---~---~~ivIv  191 (217)
T COG0269         140 RDAQ------------AAGKSWGEDDLEKIKKLSDL--GAKV--------AVAGGITPEDIPLFKGI---G---ADIVIV  191 (217)
T ss_pred             ccHh------------hcCCCccHHHHHHHHHhhcc--CceE--------EEecCCCHHHHHHHhcC---C---CCEEEE
Confidence            1110            00000  1122333344322  1111        33566899888866532   2   347899


Q ss_pred             ccCCcccCCHH
Q 015310          245 SKPVGHSKGPI  255 (409)
Q Consensus       245 G~pi~hS~SP~  255 (409)
                      |..|.+|..|.
T Consensus       192 GraIt~a~dp~  202 (217)
T COG0269         192 GRAITGAKDPA  202 (217)
T ss_pred             CchhcCCCCHH
Confidence            99999999997

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=87.67  E-value=21  Score=35.80  Aligned_cols=97  Identities=15%  Similarity=0.102  Sum_probs=58.6

Q ss_pred             CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccc--------------hHHHHHhccCC---CcE
Q 015310           63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN--------------ILGKQYSSHQS---GTR  125 (409)
Q Consensus        63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~--------------~~~~l~~~~~~---~~k  125 (409)
                      .++|+|+.+=. ........+.++|.++.+.+-+ ++|++++.+.++..              .++.++.....   ...
T Consensus       136 ~~~pvivsI~~-~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~P  213 (344)
T PRK05286        136 RGIPLGINIGK-NKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVP  213 (344)
T ss_pred             CCCcEEEEEec-CCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCc
Confidence            57899999831 1112223467899998888755 59999999877531              22222221110   144


Q ss_pred             EEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310          126 FIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus       126 iI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                      |++-.-. .  .+.+++.++.+.+.+.|+|-+-+.-+..
T Consensus       214 V~vKlsp-~--~~~~~~~~ia~~l~~~Gadgi~~~nt~~  249 (344)
T PRK05286        214 LLVKIAP-D--LSDEELDDIADLALEHGIDGVIATNTTL  249 (344)
T ss_pred             eEEEeCC-C--CCHHHHHHHHHHHHHhCCcEEEEeCCcc
Confidence            5554431 1  1234678888888888888887766543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=87.67  E-value=0.83  Score=45.33  Aligned_cols=37  Identities=19%  Similarity=0.223  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+.||++.|+|-|..||+++.-|.-+|++|..++|..
T Consensus       144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~  180 (314)
T PRK06932        144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG  180 (314)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence            5789999999999999999999999999998888863

>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below)

Probab=87.63  E-value=0.7  Score=38.64  Aligned_cols=35  Identities=11%  Similarity=0.195  Sum_probs=27.8

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      |++||+|.|..|.-++.++.++|++.++++.++++
T Consensus         3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~   37 (110)
T PF00289_consen    3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDT   37 (110)
T ss_dssp             SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGT
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhc
Confidence            68999999999999999999999965555545443

CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=87.62  E-value=0.73  Score=45.33  Aligned_cols=36  Identities=33%  Similarity=0.477  Sum_probs=32.0

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      +.+.-|+|+|+||+|.-++--|.+-|+ +|.|++-++
T Consensus        72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq  108 (430)
T KOG2018|consen   72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ  108 (430)
T ss_pred             hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence            457789999999999999999999999 999987653

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=87.60  E-value=25  Score=33.07  Aligned_cols=85  Identities=15%  Similarity=0.283  Sum_probs=56.8

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----CC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCC
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-----QP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEG   82 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-----~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~   82 (409)
                      .+.+|.-||..-+...+.+++++..+.|+|++=  +|-++..     .- ...++.+++.++.|+=+++=-.        
T Consensus         2 ~~~~iapSILsaD~~~l~~el~~~~~agad~iH--~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~--------   71 (220)
T COG0036           2 KMMKIAPSILSADFARLGEELKALEAAGADLIH--IDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVE--------   71 (220)
T ss_pred             CCceeeeehhhCCHhHHHHHHHHHHHcCCCEEE--EeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecC--------
Confidence            467889999999999999999998888999984  5666532     11 2467777776677776665321        


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEec
Q 015310           83 DEHKRLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        83 ~~~~~~~ll~~~~~~g~dyvDiEl  106 (409)
                      +++.|++   ..++.|++||-+=.
T Consensus        72 ~p~~~i~---~fa~agad~It~H~   92 (220)
T COG0036          72 NPDRYIE---AFAKAGADIITFHA   92 (220)
T ss_pred             CHHHHHH---HHHHhCCCEEEEEe
Confidence            3444443   44556666655433

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=87.57  E-value=24  Score=33.96  Aligned_cols=194  Identities=16%  Similarity=0.143  Sum_probs=108.2

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC-
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-   98 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g-   98 (409)
                      +.++.+.-++...+.|.|.||.=.....+ .+.+.+..+.+. .+.++..-+|...             +-++.+.+.+ 
T Consensus        18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~~~~l~~~~~~~~~~~l~r~~~-------------~~v~~a~~~~~   83 (268)
T cd07940          18 TPEEKLEIARQLDELGVDVIEAGFPAASP-GDFEAVKRIAREVLNAEICGLARAVK-------------KDIDAAAEALK   83 (268)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCCCCH-HHHHHHHHHHHhCCCCEEEEEccCCH-------------hhHHHHHHhCC
Confidence            44555555666667899999985322111 223444555442 3456665556431             2245566666 


Q ss_pred             ---CcEEEEeccCcc------------chHH---HHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           99 ---ADYVDFELKVAS------------NILG---KQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        99 ---~dyvDiEl~~~~------------~~~~---~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                         ++.|.+=....+            +.++   +.+ .++..+.++..+.=+...+ +.+.+.+.++++.++|+|.+=+
T Consensus        84 ~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~~~i~l  162 (268)
T cd07940          84 PAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRT-DLDFLIEVVEAAIEAGATTINI  162 (268)
T ss_pred             CCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence               888888654321            1112   222 3455677776665443333 3678999999999999998877


Q ss_pred             EeecC--CHhHHHHHHHHhccC-C---CCEEE-----EEcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHh
Q 015310          160 VFSVN--DITEIARIFQLLSHC-Q---VPIIA-----YSVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQ  227 (409)
Q Consensus       160 a~~~~--~~~D~~~ll~~~~~~-~---~p~i~-----~~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~  227 (409)
                      +=+.-  ++.++..+++.+.+. +   .|+-.     ++|+-.-.+.=+   .-|..+.=+++.. +-+.|.++.+++..
T Consensus       163 ~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi---~aG~~~iD~s~~GlG~~aGN~~tE~lv~  239 (268)
T cd07940         163 PDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAV---EAGARQVECTINGIGERAGNAALEEVVM  239 (268)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHH---HhCCCEEEEEeeccccccccccHHHHHH
Confidence            64443  588888888876553 2   34321     223222222222   2233333233322 24578888888876


Q ss_pred             hhhhc
Q 015310          228 TYKVE  232 (409)
Q Consensus       228 ~~~~~  232 (409)
                      .++..
T Consensus       240 ~L~~~  244 (268)
T cd07940         240 ALKTR  244 (268)
T ss_pred             HHHhc
Confidence            66543

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>PRK07121 hypothetical protein; Validated

Probab=87.55  E-value=0.68  Score=48.66  Aligned_cols=34  Identities=32%  Similarity=0.461  Sum_probs=30.3

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ...|||+|+|++|-+++..+++.|++|+|+.+..
T Consensus        20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~   53 (492)
T PRK07121         20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAA   53 (492)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3569999999999999999999999999988653

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=87.52  E-value=0.6  Score=49.73  Aligned_cols=34  Identities=38%  Similarity=0.487  Sum_probs=31.2

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ...|+|+|||.+|.+++..|.+.|++++|+.|..
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~   56 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD   56 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            3579999999999999999999999999999875

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=87.50  E-value=6.1  Score=39.46  Aligned_cols=83  Identities=18%  Similarity=0.221  Sum_probs=57.5

Q ss_pred             EEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC------CCC----hhHHHHHHhcCCCcEEEEeccCCCCCCCCC
Q 015310           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN------FQP----GKDLEIILTKKPLPVLIVYRPKWAGGLYEG   82 (409)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~------~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~   82 (409)
                      +.+.|.+.+.++....++.+.+.|+|++|+=+-+-..      .+.    .+.++.+++..++|+++-++..     +  
T Consensus       104 vi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~-----~--  176 (334)
T PRK07565        104 VIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPY-----F--  176 (334)
T ss_pred             EEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCC-----c--
Confidence            5689999999998888888877899999996543111      111    1233455556689999988742     1  


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEE
Q 015310           83 DEHKRLEALHLAEDLGADYVDF  104 (409)
Q Consensus        83 ~~~~~~~ll~~~~~~g~dyvDi  104 (409)
                        .+..++.+.+.+.|+|+|.+
T Consensus       177 --~~~~~~a~~l~~~G~dgI~~  196 (334)
T PRK07565        177 --SNLANMAKRLDAAGADGLVL  196 (334)
T ss_pred             --hhHHHHHHHHHHcCCCeEEE
Confidence              13446667777889999976

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=87.49  E-value=1.7  Score=44.72  Aligned_cols=57  Identities=32%  Similarity=0.406  Sum_probs=42.6

Q ss_pred             EEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEec-----------------hhHHHHHHHHHHhCCCeEEE
Q 015310          334 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-----------------GGAGRALAFGAKSRGARVVI  396 (409)
Q Consensus       334 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGa-----------------GGaarai~~aL~~~G~~i~v  396 (409)
                      |---|..=++..+++.+.           ..+++||++||-|+                 |++|++++.+|...|++|++
T Consensus       165 gr~~~~~~I~~~~~~~~~-----------~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~  233 (399)
T PRK05579        165 GRMAEPEEIVAAAERALS-----------PKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTL  233 (399)
T ss_pred             CCCCCHHHHHHHHHHHhh-----------hcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEE
Confidence            334455555566655543           13578999999987                 56999999999999999999


Q ss_pred             EeCCh
Q 015310          397 FDIDF  401 (409)
Q Consensus       397 ~nR~~  401 (409)
                      ++++.
T Consensus       234 v~~~~  238 (399)
T PRK05579        234 VSGPV  238 (399)
T ss_pred             eCCCc
Confidence            98864

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.45  E-value=0.81  Score=44.81  Aligned_cols=43  Identities=30%  Similarity=0.642  Sum_probs=36.1

Q ss_pred             CCCCCCEEEEEech-hHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          364 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .+.+|+.|||=|+| |.||+++..++++|+++.+++.+.+-..+
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~e   77 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEE   77 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHH
Confidence            45678999999974 69999999999999999999988655443

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=87.37  E-value=18  Score=35.98  Aligned_cols=90  Identities=16%  Similarity=0.187  Sum_probs=52.5

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEE--EE-EecCCCCCCChhHHHHHH-hcCCCcEEEEeccCCCCCCCCCCH
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVV--EI-RLDCINNFQPGKDLEIIL-TKKPLPVLIVYRPKWAGGLYEGDE   84 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~v--El-RlD~l~~~~~~~~l~~l~-~~~~~PiI~T~R~~~eGG~~~~~~   84 (409)
                      +.|.+-.|+.+-+.-.+...++   +.|+|++  |. ....+...+. .....+. .....|+++-+-        -.++
T Consensus         9 ~~~~~lAPM~g~td~~fR~l~~---~~g~~~~~temvs~~~~~~~~~-~~~~~~~~~~~~~~~~vQl~--------g~~~   76 (321)
T PRK10415          9 RNRLIAAPMAGITDRPFRTLCY---EMGAGLTVSEMMSSNPQVWESD-KSRLRMVHIDEPGIRTVQIA--------GSDP   76 (321)
T ss_pred             CCCEEecCCCCCCcHHHHHHHH---HHCCCEEEEccEEcchhhhcCH-hHHHHhccCccCCCEEEEEe--------CCCH
Confidence            4477888998888776665554   4588864  42 2211111111 1111111 122456666652        1256


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeccCcc
Q 015310           85 HKRLEALHLAEDLGADYVDFELKVAS  110 (409)
Q Consensus        85 ~~~~~ll~~~~~~g~dyvDiEl~~~~  110 (409)
                      ++..+..+.+.+.|+|.|||-+.++.
T Consensus        77 ~~~~~aa~~~~~~g~d~IdlN~gCP~  102 (321)
T PRK10415         77 KEMADAARINVESGAQIIDINMGCPA  102 (321)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCCCH
Confidence            77777777777789999999999885

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=87.37  E-value=1.1  Score=44.65  Aligned_cols=41  Identities=32%  Similarity=0.468  Sum_probs=35.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .|++++|.|+|+.|.+++..+...|+ +|++++++.+|.+.+
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~  217 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA  217 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            47899999999999999998999999 699999988776543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=87.29  E-value=1.2  Score=44.70  Aligned_cols=40  Identities=35%  Similarity=0.521  Sum_probs=35.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+++|+|+|+.|.+++..+..+|+ +|+++.++.+|.+.
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~  226 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFEL  226 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            47899999999999999999999999 79999998887654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=87.24  E-value=21  Score=35.00  Aligned_cols=80  Identities=19%  Similarity=0.056  Sum_probs=56.0

Q ss_pred             EEEeeccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCC--CChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           13 ICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNF--QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        13 icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~~--~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      +.+.|... +.++....++.+...|+|.+++-+|+....  ...+.++.+++..+.|+++-..         .+.    +
T Consensus       118 ~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~pvivK~v---------~s~----~  184 (299)
T cd02809         118 RWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGPLILKGI---------LTP----E  184 (299)
T ss_pred             eEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCCEEEeec---------CCH----H
Confidence            34555544 677777777777778999999999987521  1124677777777899998743         232    2


Q ss_pred             HHHHHHHcCCcEEEEe
Q 015310           90 ALHLAEDLGADYVDFE  105 (409)
Q Consensus        90 ll~~~~~~g~dyvDiE  105 (409)
                      ..+.+.+.|+|+|++.
T Consensus       185 ~a~~a~~~G~d~I~v~  200 (299)
T cd02809         185 DALRAVDAGADGIVVS  200 (299)
T ss_pred             HHHHHHHCCCCEEEEc
Confidence            3567778999999986

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=87.19  E-value=31  Score=33.73  Aligned_cols=195  Identities=16%  Similarity=0.160  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEE-e---cCCCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 015310           22 VEQVLSNMYQAKAEGADVVEIR-L---DCINNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (409)
Q Consensus        22 ~~e~~~~~~~~~~~~aD~vElR-l---D~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (409)
                      .++-++-++...+.|.|.+|.= .   ++++...+ .+.+..+.+..+..+. .++.         .    .+=++++++
T Consensus        25 ~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~-~l~~---------~----~~~ie~A~~   90 (287)
T PRK05692         25 TADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYA-ALTP---------N----LKGLEAALA   90 (287)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEE-EEec---------C----HHHHHHHHH
Confidence            3444555566667899999985 1   11221111 2233344322222332 2221         1    122367888


Q ss_pred             cCCcEEEEeccCccc------------h---HHHHH-hccCCCcEEE--Eec----cCCCCCCCHhHHHHHHHHHHHcCC
Q 015310           97 LGADYVDFELKVASN------------I---LGKQY-SSHQSGTRFI--VSC----NLDCETPSEEDLGYLVSRMQATGA  154 (409)
Q Consensus        97 ~g~dyvDiEl~~~~~------------~---~~~l~-~~~~~~~kiI--~S~----H~f~~tp~~~~l~~~~~~~~~~ga  154 (409)
                      .|++.|.+-+...+.            .   +.+.+ .+++.+.++.  +|+    .+...+ +.+.+.++.+++.+.|+
T Consensus        91 ~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~  169 (287)
T PRK05692         91 AGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEV-PPEAVADVAERLFALGC  169 (287)
T ss_pred             cCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCC-CHHHHHHHHHHHHHcCC
Confidence            999998887666431            1   12233 3556677765  232    221122 35789999999999999


Q ss_pred             CEEEEEeecC--CHhHHHHHHHHhccC-C-CCEEEEEcCcc--chhhhhhcCCCCCcccccc---CCC-CCCC---CCCC
Q 015310          155 DIIKLVFSVN--DITEIARIFQLLSHC-Q-VPIIAYSVGER--GLVSQLLSPKFNGALVYGS---LKG-TPVL---GLPT  221 (409)
Q Consensus       155 DivKia~~~~--~~~D~~~ll~~~~~~-~-~p~i~~~MG~~--G~~SRi~~~~~Gs~ltf~~---l~~-~sAP---GQ~~  221 (409)
                      |.+-++=+.-  ++.++.++++.+.+. + .|+-.=+=-..  +...=+..-.-|..+.-++   +++ |-||   |+.+
T Consensus       170 d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~aGN~~  249 (287)
T PRK05692        170 YEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGASGNVA  249 (287)
T ss_pred             cEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCcccccc
Confidence            9988875443  578888888776543 2 44432111111  2222222223333332233   233 3444   5888


Q ss_pred             HHHHHhhhhh
Q 015310          222 VESLRQTYKV  231 (409)
Q Consensus       222 ~~~l~~~~~~  231 (409)
                      .+++...++.
T Consensus       250 ~E~lv~~L~~  259 (287)
T PRK05692        250 TEDVLYMLHG  259 (287)
T ss_pred             HHHHHHHHHh
Confidence            8888776653

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=87.19  E-value=4.1  Score=39.89  Aligned_cols=84  Identities=23%  Similarity=0.269  Sum_probs=57.2

Q ss_pred             EEEeeccCCHHHHHHHHHHHHhc--CCCEEEEEecCCCCC-------CCh----hHHHHHHhcCCCcEEEEeccCCCCCC
Q 015310           13 ICAPLMAQSVEQVLSNMYQAKAE--GADVVEIRLDCINNF-------QPG----KDLEIILTKKPLPVLIVYRPKWAGGL   79 (409)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~--~aD~vElRlD~l~~~-------~~~----~~l~~l~~~~~~PiI~T~R~~~eGG~   79 (409)
                      +.++|.+.+.+++...++.+.+.  ++|.+|+=+=+=...       .+.    +.+..+++..++|+.+-+|.      
T Consensus        93 l~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~------  166 (300)
T TIGR01037        93 LIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP------  166 (300)
T ss_pred             EEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC------
Confidence            66999999999999888887554  399999976542110       111    23334445557898887763      


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           80 YEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                         +.++-.++.+.+.+.|+|+|.+-
T Consensus       167 ---~~~~~~~~a~~l~~~G~d~i~v~  189 (300)
T TIGR01037       167 ---NVTDITEIAKAAEEAGADGLTLI  189 (300)
T ss_pred             ---ChhhHHHHHHHHHHcCCCEEEEE
Confidence               22345667777888999999873

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd08293 PTGR2 Prostaglandin reductase

Probab=87.16  E-value=1.1  Score=44.05  Aligned_cols=40  Identities=30%  Similarity=0.311  Sum_probs=34.5

Q ss_pred             CCEEEEEec-hhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          368 GRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       368 ~~~vlvlGa-GGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      +.+++|.|+ |+.|.+++..+..+|+ +|+++.++.++.+.+
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~  196 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLL  196 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence            379999997 9999999988888999 899999988876654

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=87.11  E-value=10  Score=37.99  Aligned_cols=106  Identities=6%  Similarity=0.058  Sum_probs=67.8

Q ss_pred             EEeccCCCCCC---CCCCHHHHHHHHHHHHHcCCcEEEE---------ecc--C----ccchHHHHHhccCCCcEEEEec
Q 015310           69 IVYRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDF---------ELK--V----ASNILGKQYSSHQSGTRFIVSC  130 (409)
Q Consensus        69 ~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~g~dyvDi---------El~--~----~~~~~~~l~~~~~~~~kiI~S~  130 (409)
                      .|+|   +|++   +..+.++..++.+.+.+.|+++|.+         .+.  .    +.+.++.+... .+++++.+=.
T Consensus         9 ~TLR---DG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll   84 (337)
T PRK08195          9 VTLR---DGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALL   84 (337)
T ss_pred             CCCC---CcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEe
Confidence            4566   5654   4567899999999999999999888         221  1    12344444322 2456654311


Q ss_pred             cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEE
Q 015310          131 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPII  184 (409)
Q Consensus       131 H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i  184 (409)
                      .     |....+ +-++.+.+.|.|++++++..+..+......+..++....+.
T Consensus        85 ~-----pg~~~~-~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~  132 (337)
T PRK08195         85 L-----PGIGTV-DDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTV  132 (337)
T ss_pred             c-----cCcccH-HHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEE
Confidence            1     222222 34688888999999999988877766667776666554443

>PLN02572 UDP-sulfoquinovose synthase

Probab=87.04  E-value=1.1  Score=46.50  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=31.7

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeC
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR  399 (409)
                      ..++++++||.|+ |+.|+.++..|.+.|++|++++|
T Consensus        43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~   79 (442)
T PLN02572         43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN   79 (442)
T ss_pred             ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence            4567899999996 88999999999999999998764

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=87.01  E-value=1.1  Score=47.65  Aligned_cols=37  Identities=30%  Similarity=0.437  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..+.||++.|+|.|..|++++..|..+|++|+.++|+
T Consensus       136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~  172 (526)
T PRK13581        136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPY  172 (526)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence            3478999999999999999999999999999999985

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=86.95  E-value=1.3  Score=44.32  Aligned_cols=41  Identities=27%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|.+++|.|+ |+.|.+++..++.+|++|+.+.++.++.+.+
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~  199 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLL  199 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            4789999998 9999999988888999988888888776543

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=86.93  E-value=31  Score=33.42  Aligned_cols=43  Identities=14%  Similarity=0.161  Sum_probs=34.2

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP   52 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~   52 (409)
                      ...--++.-.++.+..++.++.+.+.|||++|+=+-+-+..-+
T Consensus        18 a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvAD   60 (265)
T COG0159          18 ALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVAD   60 (265)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCcc
Confidence            3444567777899999999998889999999999987765533

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=86.85  E-value=1.1  Score=45.11  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=31.2

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      .|++++|.|+|+.|.+++..++.+|++++++..+.++
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~  219 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNK  219 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcch
Confidence            4789999999999999999999999987776665544

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=86.84  E-value=0.74  Score=48.67  Aligned_cols=33  Identities=39%  Similarity=0.482  Sum_probs=30.0

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|||+|++|-+++..+++.|++|.|+.+..
T Consensus        62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~   94 (506)
T PRK06481         62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP   94 (506)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            469999999999999999999999999998764

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=86.73  E-value=1.2  Score=44.79  Aligned_cols=40  Identities=33%  Similarity=0.567  Sum_probs=34.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|++++|.|+|+.|.+++..+...|+ +|++++++++|.+-
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~  231 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLAL  231 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH
Confidence            47899999999999999988889999 79999998877653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK12999 pyruvate carboxylase; Reviewed

Probab=86.69  E-value=62  Score=38.00  Aligned_cols=209  Identities=12%  Similarity=0.085  Sum_probs=123.9

Q ss_pred             HHHHHHHHHHHHhc--CCCEEEEEe----cC---CCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           22 VEQVLSNMYQAKAE--GADVVEIRL----DC---INNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        22 ~~e~~~~~~~~~~~--~aD~vElRl----D~---l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      .+|++.-++.....  |.+.+|.=-    |.   +...++.+.+..+++.. +.|+-.-+|..+==|....++.-..+.+
T Consensus       554 ~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i  633 (1146)
T PRK12999        554 TKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFV  633 (1146)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHH
Confidence            45566666666666  999999753    21   12224556777777543 7788888887665565555666677789


Q ss_pred             HHHHHcCCcEEEEeccCcc-chHHHHH-hccCCC--cEEEEecc----CCCCCC-CHhHHHHHHHHHHHcCCCEEEEEee
Q 015310           92 HLAEDLGADYVDFELKVAS-NILGKQY-SSHQSG--TRFIVSCN----LDCETP-SEEDLGYLVSRMQATGADIIKLVFS  162 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~--~kiI~S~H----~f~~tp-~~~~l~~~~~~~~~~gaDivKia~~  162 (409)
                      +.+.+.|+|.+-|=..... +.++..+ ..++.+  ..+-+||-    |...+. +.+.+.++.+++.+.|||++-|+=|
T Consensus       634 ~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt  713 (1146)
T PRK12999        634 REAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDM  713 (1146)
T ss_pred             HHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCc
Confidence            9999999999877433322 1111112 223334  45667765    333332 4466889999999999999988866


Q ss_pred             cC--CHhHHHHHHHHhccC-CCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310          163 VN--DITEIARIFQLLSHC-QVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (409)
Q Consensus       163 ~~--~~~D~~~ll~~~~~~-~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~  230 (409)
                      .-  ++.++.++.+.+++. +.|+=.=  +.--++..+=+..-.-|..+.=+++.. +--.||++++++...++
T Consensus       714 ~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~tgn~~le~vv~~L~  787 (1146)
T PRK12999        714 AGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQPSLNSIVAALE  787 (1146)
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCHHHHHHHHHHH
Confidence            65  577887777776533 4453211  112223333333333444333333322 22367777777766655

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=86.63  E-value=1.3  Score=44.36  Aligned_cols=40  Identities=33%  Similarity=0.470  Sum_probs=35.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+++|.|+|+.|.+++..+...|+ +|+++.|+.++.+.
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~  227 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQ  227 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence            57899999999999999998999999 89999998877654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PTZ00188 adrenodoxin reductase; Provisional

Probab=86.61  E-value=0.98  Score=47.57  Aligned_cols=35  Identities=17%  Similarity=0.009  Sum_probs=30.0

Q ss_pred             CCCEEEEEechhHHHHHHHHHH-hCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~-~~G~~i~v~nR~~  401 (409)
                      ..++|+|||+|.+|-.+|..|. +.|++|+|+.|.+
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p   73 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP   73 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            4679999999999999998765 6788999998864

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=86.61  E-value=6.1  Score=40.05  Aligned_cols=80  Identities=18%  Similarity=0.127  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhcCCCEEEEEecC-------CC---CC-CC-------------hhHHHHHHhcCCCcEEEEeccC-CCCCC
Q 015310           25 VLSNMYQAKAEGADVVEIRLDC-------IN---NF-QP-------------GKDLEIILTKKPLPVLIVYRPK-WAGGL   79 (409)
Q Consensus        25 ~~~~~~~~~~~~aD~vElRlD~-------l~---~~-~~-------------~~~l~~l~~~~~~PiI~T~R~~-~eGG~   79 (409)
                      +.+.++++.+.|.|.||+..-+       |.   +. .+             .+.++.+++...-.+++.+|-. +++..
T Consensus       146 f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~  225 (361)
T cd04747         146 FARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQD  225 (361)
T ss_pred             HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccc
Confidence            3444566677899999999876       11   11 11             1344455554433344455533 22111


Q ss_pred             C----CCCHHHHHHHHHHHHHcCCcEEEE
Q 015310           80 Y----EGDEHKRLEALHLAEDLGADYVDF  104 (409)
Q Consensus        80 ~----~~~~~~~~~ll~~~~~~g~dyvDi  104 (409)
                      +    ..+.++-.++++.+.+.|+|||++
T Consensus       226 ~~~~~g~~~~e~~~~~~~l~~~gvd~i~v  254 (361)
T cd04747         226 YTARLADTPDELEALLAPLVDAGVDIFHC  254 (361)
T ss_pred             cccCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence            1    235677778888888889999876

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=86.59  E-value=1.3  Score=44.14  Aligned_cols=41  Identities=39%  Similarity=0.427  Sum_probs=35.9

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .|+++||.|+|+.|.+++..+..+|+ +|+++.++.++.+.+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~  218 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELA  218 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            57899999999999999999999999 999999888776543

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=86.45  E-value=6.6  Score=39.17  Aligned_cols=79  Identities=19%  Similarity=0.291  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecC-------CCC---C-CC-------------hhHHHHHHhcC--CCcEEEEeccC--
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDC-------INN---F-QP-------------GKDLEIILTKK--PLPVLIVYRPK--   74 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~-------l~~---~-~~-------------~~~l~~l~~~~--~~PiI~T~R~~--   74 (409)
                      +++...++++.+.|.|.||+-.-+       |..   . .+             .+.++.+++..  +.|+.+-++..  
T Consensus       154 ~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~  233 (336)
T cd02932         154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDW  233 (336)
T ss_pred             HHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEccccc
Confidence            344555667777999999998753       111   1 11             13455566555  55666555532  


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015310           75 WAGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (409)
Q Consensus        75 ~eGG~~~~~~~~~~~ll~~~~~~g~dyvDi  104 (409)
                      .++|.   +.++..++.+.+.+.|+|||+|
T Consensus       234 ~~~g~---~~~e~~~ia~~Le~~gvd~iev  260 (336)
T cd02932         234 VEGGW---DLEDSVELAKALKELGVDLIDV  260 (336)
T ss_pred             CCCCC---CHHHHHHHHHHHHHcCCCEEEE
Confidence            12332   5677888888888889999886

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=86.41  E-value=1.4  Score=43.66  Aligned_cols=40  Identities=33%  Similarity=0.405  Sum_probs=34.5

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .+++++|+|+|+.|.+++..+..+|+ .|+++.++.++.+.
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~  200 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLAL  200 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence            47899999999999999999999999 57888888877654

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=86.39  E-value=26  Score=33.40  Aligned_cols=122  Identities=18%  Similarity=0.161  Sum_probs=77.3

Q ss_pred             HHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCc---------------cchHHHHH---
Q 015310           56 LEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVA---------------SNILGKQY---  117 (409)
Q Consensus        56 l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~---------------~~~~~~l~---  117 (409)
                      +..+.+...+|++.-..+    |.  ++.+...+..+..++.|+..|=||-...               ++..+.+.   
T Consensus        61 ~~~I~~~~~~Pv~~D~~~----G~--g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~  134 (243)
T cd00377          61 VRRIARAVDLPVIADADT----GY--GNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAAR  134 (243)
T ss_pred             HHHHHhhccCCEEEEcCC----CC--CCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHH
Confidence            344445678999987643    42  2556677778899999999999976542               22333333   


Q ss_pred             hccCC--CcEEEEeccCCCCC-CCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEE
Q 015310          118 SSHQS--GTRFIVSCNLDCET-PSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS  187 (409)
Q Consensus       118 ~~~~~--~~kiI~S~H~f~~t-p~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~  187 (409)
                      .+...  ..-||.--=-|... ...++.+++.+...+.|||.+=+ ..+.+.++..++.   ...+.|++.+.
T Consensus       135 ~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v-~~~~~~~~~~~~~---~~~~~Pl~~~~  203 (243)
T cd00377         135 DARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFV-EGLKDPEEIRAFA---EAPDVPLNVNM  203 (243)
T ss_pred             HHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEe-CCCCCHHHHHHHH---hcCCCCEEEEe
Confidence            23222  34444432223222 46788999999999999999866 4555666665544   44577887663

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.31  E-value=1  Score=48.14  Aligned_cols=40  Identities=20%  Similarity=0.199  Sum_probs=37.0

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .+++|+|.|..|+.++..|.+.|.++++++.|+++++++.
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~  457 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELR  457 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            4799999999999999999999999999999999988763

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=86.28  E-value=35  Score=33.32  Aligned_cols=40  Identities=15%  Similarity=0.146  Sum_probs=29.7

Q ss_pred             CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC--CcEEEEeccCcc
Q 015310           63 KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG--ADYVDFELKVAS  110 (409)
Q Consensus        63 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g--~dyvDiEl~~~~  110 (409)
                      .+.|+++.+..        .+.+++.+..+.+.+.+  +|+||+-+.++.
T Consensus        89 ~~~pl~~qi~g--------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~  130 (300)
T TIGR01037        89 FPTPLIASVYG--------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPH  130 (300)
T ss_pred             CCCcEEEEeec--------CCHHHHHHHHHHHHhccCccCEEEEECCCCC
Confidence            36799999852        25678888877776653  899999988764

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=86.28  E-value=3.1  Score=41.45  Aligned_cols=50  Identities=18%  Similarity=0.304  Sum_probs=39.3

Q ss_pred             CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015310          134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA  185 (409)
Q Consensus       134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~  185 (409)
                      ..|-+.+.-.+++.++.+.|||||++|+.  +.++...+-......+.|+|+
T Consensus        28 t~T~Dv~atv~QI~~L~~aGceiVRvavp--~~~~A~al~~I~~~~~iPlVA   77 (346)
T TIGR00612        28 TDTIDIDSTVAQIRALEEAGCDIVRVTVP--DRESAAAFEAIKEGTNVPLVA   77 (346)
T ss_pred             CCchhHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHhHHHHHhCCCCCEEE
Confidence            34445667788899999999999999987  667776666666677888876

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=86.24  E-value=29  Score=32.74  Aligned_cols=88  Identities=13%  Similarity=0.168  Sum_probs=59.3

Q ss_pred             CCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CC-----hhHHHHHHhcC-CCcEEEEeccCCCCCCC
Q 015310            8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QP-----GKDLEIILTKK-PLPVLIVYRPKWAGGLY   80 (409)
Q Consensus         8 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~~-----~~~l~~l~~~~-~~PiI~T~R~~~eGG~~   80 (409)
                      +-+++|+.+|..-+...+.++++++.+.|+|.+  -+|.++.. -+     .+.++.+++.. ++|+=+.+-..      
T Consensus         4 ~~~~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~--H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~------   75 (228)
T PTZ00170          4 PLKAIIAPSILAADFSKLADEAQDVLSGGADWL--HVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVS------   75 (228)
T ss_pred             CCCCEEehhHhhcCHHHHHHHHHHHHHcCCCEE--EEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCC------
Confidence            347889999999999999999999888888886  56776632 11     24566676655 77776666521      


Q ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEeccC
Q 015310           81 EGDEHKRLEALHLAEDLGADYVDFELKV  108 (409)
Q Consensus        81 ~~~~~~~~~ll~~~~~~g~dyvDiEl~~  108 (409)
                        ..+.+.   +.+.+.|+|+|-+=...
T Consensus        76 --~p~~~i---~~~~~~Gad~itvH~ea   98 (228)
T PTZ00170         76 --NPEKWV---DDFAKAGASQFTFHIEA   98 (228)
T ss_pred             --CHHHHH---HHHHHcCCCEEEEeccC
Confidence              344444   45566777776664443

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=86.08  E-value=4.9  Score=40.36  Aligned_cols=78  Identities=19%  Similarity=0.199  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhcCCCEEEEEec--CC-----CCC-C---C-------------hhHHHHHHhcCCCcEEEEeccCC----C
Q 015310           25 VLSNMYQAKAEGADVVEIRLD--CI-----NNF-Q---P-------------GKDLEIILTKKPLPVLIVYRPKW----A   76 (409)
Q Consensus        25 ~~~~~~~~~~~~aD~vElRlD--~l-----~~~-~---~-------------~~~l~~l~~~~~~PiI~T~R~~~----e   76 (409)
                      +...++++.+.|.|.||+-.-  ||     ... +   +             .+-+..+++..+.++.+.+|-..    +
T Consensus       143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~  222 (343)
T cd04734         143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE  222 (343)
T ss_pred             HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence            344456667789999999993  32     211 1   1             13344555556777778888543    2


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcC-CcEEEEe
Q 015310           77 GGLYEGDEHKRLEALHLAEDLG-ADYVDFE  105 (409)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g-~dyvDiE  105 (409)
                      ||   .+.++-.++.+.+.+.| +|||+|-
T Consensus       223 ~G---~~~~e~~~~~~~l~~~G~vd~i~vs  249 (343)
T cd04734         223 GG---LSPDEALEIAARLAAEGLIDYVNVS  249 (343)
T ss_pred             CC---CCHHHHHHHHHHHHhcCCCCEEEeC
Confidence            33   35677788888888998 8999983

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=86.05  E-value=1.1  Score=49.77  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=34.8

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ++|.|||||-+|..|++.++..|++|++++++++..+.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~  373 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDR  373 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHH
Confidence            68999999999999999999999999999999877554

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=86.01  E-value=0.89  Score=43.48  Aligned_cols=34  Identities=29%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      ..+++|+|+||-|..++..|...|+ +++|++.+.
T Consensus        30 ~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~   64 (254)
T COG0476          30 DSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDT   64 (254)
T ss_pred             hCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCc
Confidence            4579999999999999999999999 999998764

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=86.00  E-value=5.6  Score=39.28  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhcCCCEEEEEec--CC-----CCC----CC-------------hhHHHHHHhcC--CCcEEEEeccC--CC
Q 015310           25 VLSNMYQAKAEGADVVEIRLD--CI-----NNF----QP-------------GKDLEIILTKK--PLPVLIVYRPK--WA   76 (409)
Q Consensus        25 ~~~~~~~~~~~~aD~vElRlD--~l-----~~~----~~-------------~~~l~~l~~~~--~~PiI~T~R~~--~e   76 (409)
                      +.+.++++.+.|.|.||+-.-  ||     ...    .+             .+.+..+++..  +.|+.+-++..  .+
T Consensus       143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~  222 (327)
T cd02803         143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP  222 (327)
T ss_pred             HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence            344456667789999999885  22     111    11             13444555544  56666666543  12


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           77 GGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      +|   .+.++..++++.+.+.|+|||+|-
T Consensus       223 ~g---~~~~e~~~la~~l~~~G~d~i~vs  248 (327)
T cd02803         223 GG---LTLEEAIEIAKALEEAGVDALHVS  248 (327)
T ss_pred             CC---CCHHHHHHHHHHHHHcCCCEEEeC
Confidence            33   367888999999999999999874

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PLN02712 arogenate dehydrogenase

Probab=85.99  E-value=1.6  Score=47.96  Aligned_cols=39  Identities=18%  Similarity=0.162  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ...+++++.|||.|.+|++++.+|.+.|.+|++++|+..
T Consensus       365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~  403 (667)
T PLN02712        365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY  403 (667)
T ss_pred             CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH
Confidence            445678999999999999999999999999999999854

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=85.87  E-value=1.1  Score=44.34  Aligned_cols=32  Identities=25%  Similarity=0.403  Sum_probs=28.3

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCC-eEEEEeC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI  399 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR  399 (409)
                      .-++|||||||-|--+..-|+-.|. ++.|++-
T Consensus        40 ~~kiLviGAGGLGCElLKnLal~gF~~~~viDm   72 (422)
T KOG2015|consen   40 DCKILVIGAGGLGCELLKNLALSGFRQLHVIDM   72 (422)
T ss_pred             hCcEEEEccCcccHHHHHhHHhhccceeEEEee
Confidence            4689999999999999999999998 7888753

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=85.80  E-value=1.5  Score=42.65  Aligned_cols=41  Identities=24%  Similarity=0.257  Sum_probs=35.2

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+.+++|.|+|+.|.+++..+..+|++|+++.++.++.+.+
T Consensus       155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~  195 (319)
T cd08242         155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALA  195 (319)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence            46899999999999999999999999988888887776543

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=85.79  E-value=3.5  Score=40.98  Aligned_cols=59  Identities=17%  Similarity=0.352  Sum_probs=44.4

Q ss_pred             EEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015310          125 RFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA  185 (409)
Q Consensus       125 kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~  185 (409)
                      .|.+-.-....|-+.+.-.+++.++.+.|||||++++.  +.+|...+-+...+.+.|+|+
T Consensus        21 PI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~--~~e~A~A~~~Ik~~~~vPLVa   79 (361)
T COG0821          21 PIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVP--DMEAAEALKEIKQRLNVPLVA   79 (361)
T ss_pred             ceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecC--CHHHHHHHHHHHHhCCCCEEE
Confidence            34443333455666777888899999999999999886  777777777777777889886

>PRK08005 epimerase; Validated

Probab=85.78  E-value=28  Score=32.53  Aligned_cols=58  Identities=9%  Similarity=0.083  Sum_probs=41.9

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCC-C-----hhHHHHHHhcCCCcEEEEe
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQ-P-----GKDLEIILTKKPLPVLIVY   71 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~-~-----~~~l~~l~~~~~~PiI~T~   71 (409)
                      +|+.+|..-+...+.++++++.+.|+|.+  -+|.++..- +     .+.++.+++.++.|+=+++
T Consensus         2 ~i~pSil~ad~~~l~~el~~l~~~g~d~l--HiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHL   65 (210)
T PRK08005          2 ILHPSLASADPLRYAEALTALHDAPLGSL--HLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHL   65 (210)
T ss_pred             EEEeehhhCCHHHHHHHHHHHHHCCCCEE--EEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEe
Confidence            57889999999999999999888899986  567776321 1     2456667665666655554

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=85.77  E-value=13  Score=35.85  Aligned_cols=124  Identities=15%  Similarity=0.129  Sum_probs=69.9

Q ss_pred             HHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH-cCCcEEEEeccCccchHHHHHhccCCCcEEE------Ee
Q 015310           57 EIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED-LGADYVDFELKVASNILGKQYSSHQSGTRFI------VS  129 (409)
Q Consensus        57 ~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI------~S  129 (409)
                      +.+.+..+.|+|+. =.  +=|.+..++++-.+--.+.++ .|++.|=||-..  +..+.+..+.+.++.++      -.
T Consensus        65 ~~V~r~~~~p~via-D~--~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~--~~~~~I~al~~agipV~gHiGL~pq  139 (254)
T cd06557          65 RAVRRGAPRALVVA-DM--PFGSYQTSPEQALRNAARLMKEAGADAVKLEGGA--EVAETIRALVDAGIPVMGHIGLTPQ  139 (254)
T ss_pred             HHHHhcCCCCeEEE-eC--CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcH--HHHHHHHHHHHcCCCeeccccccce
Confidence            34455668895542 11  213444556665555455555 899999999763  22223332223444433      22


Q ss_pred             ccCCC-------CCCC-HhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCc
Q 015310          130 CNLDC-------ETPS-EEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE  190 (409)
Q Consensus       130 ~H~f~-------~tp~-~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~  190 (409)
                      .+++.       +|.. .+++.+....+++.|||.+=+=..|.  +..   -++++..+.|+|+|+-|.
T Consensus       140 ~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~~--~~~---~~i~~~v~iP~igiGaG~  203 (254)
T cd06557         140 SVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECVPA--ELA---KEITEALSIPTIGIGAGP  203 (254)
T ss_pred             eeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH--HHH---HHHHHhCCCCEEEeccCC
Confidence            22221       2332 35677777888899999887755542  222   333444578999998776

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=85.76  E-value=1.3  Score=45.59  Aligned_cols=38  Identities=32%  Similarity=0.470  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+.||++.|+|.|..|+.++..+..+|++|..++|+.
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~  184 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED  184 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            45789999999999999999999999999999999864

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=85.71  E-value=1.7  Score=42.61  Aligned_cols=41  Identities=27%  Similarity=0.294  Sum_probs=34.2

Q ss_pred             CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|.+++|.| +|+.|.+++..+...|++|+.+.++.++.+.+
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~  179 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL  179 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            478999999 59999999888888999988888887776543

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=85.69  E-value=6.1  Score=40.34  Aligned_cols=81  Identities=22%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             HHHHHHHHhcCCCEEEEEe---cCC-----C---CC-CC-------------hhHHHHHHhcCCCcEEEEeccCC-----
Q 015310           26 LSNMYQAKAEGADVVEIRL---DCI-----N---NF-QP-------------GKDLEIILTKKPLPVLIVYRPKW-----   75 (409)
Q Consensus        26 ~~~~~~~~~~~aD~vElRl---D~l-----~---~~-~~-------------~~~l~~l~~~~~~PiI~T~R~~~-----   75 (409)
                      .+.++++.+.|.|.||+-.   -||     .   +. .+             .+.++.+++.....+++.+|-..     
T Consensus       153 ~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~  232 (382)
T cd02931         153 GESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIK  232 (382)
T ss_pred             HHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcc
Confidence            3445566778999999997   443     1   11 11             13444555555433445555221     


Q ss_pred             ----------CCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310           76 ----------AGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        76 ----------eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl  106 (409)
                                |....-.+.++..++.+.+.+.|+|||+|-.
T Consensus       233 ~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~  273 (382)
T cd02931         233 DLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA  273 (382)
T ss_pred             ccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence                      1111113567888999999889999999853

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=85.57  E-value=13  Score=35.71  Aligned_cols=105  Identities=6%  Similarity=-0.031  Sum_probs=64.1

Q ss_pred             EEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecc---------------CccchHHHHHhccCCCcEEEEeccCC
Q 015310           69 IVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELK---------------VASNILGKQYSSHQSGTRFIVSCNLD  133 (409)
Q Consensus        69 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~---------------~~~~~~~~l~~~~~~~~kiI~S~H~f  133 (409)
                      .|+|.-.|--.+..+.++..++++...+.|+++|++=+.               .+.+.++.+... .+++++.+-.+. 
T Consensus         6 ~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~~~-   83 (263)
T cd07943           6 VTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLLLP-   83 (263)
T ss_pred             CCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEecC-
Confidence            466643332234567899999999999999999877411               112344444322 245676433211 


Q ss_pred             CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCC
Q 015310          134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ  180 (409)
Q Consensus       134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~  180 (409)
                       ..+..    +-++++.+.|.|++.+.+..++........+..+...
T Consensus        84 -~~~~~----~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G  125 (263)
T cd07943          84 -GIGTV----DDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLG  125 (263)
T ss_pred             -CccCH----HHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCC
Confidence             11112    3367777889999999998877766666665555444

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=85.44  E-value=8.7  Score=38.23  Aligned_cols=96  Identities=9%  Similarity=0.099  Sum_probs=67.6

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----------CCh----hHHHHHHhcCCCcEEEEecc
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-----------QPG----KDLEIILTKKPLPVLIVYRP   73 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-----------~~~----~~l~~l~~~~~~PiI~T~R~   73 (409)
                      ..| +.+.|.+.+.+++.+.++.+...|+|.||+=.-+=...           ...    +.+..+++..+.|+-+-+|.
T Consensus        54 e~p-~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~  132 (318)
T TIGR00742        54 ESP-VALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI  132 (318)
T ss_pred             CCc-EEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            345 56999999999999988888778999999988773211           111    22333444568999999997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccC
Q 015310           74 KWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKV  108 (409)
Q Consensus        74 ~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~  108 (409)
                      -++-.   .+.+...++.+.+.+.|++.|+|--.+
T Consensus       133 g~~~~---~~~~~~~~~~~~l~~~G~~~itvHgRt  164 (318)
T TIGR00742       133 GIDPL---DSYEFLCDFVEIVSGKGCQNFIVHARK  164 (318)
T ss_pred             CCCCc---chHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            54311   122566788888889999999987554

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=85.38  E-value=36  Score=32.74  Aligned_cols=110  Identities=22%  Similarity=0.239  Sum_probs=71.1

Q ss_pred             HHHHHHHHHhcCCCEEEEEec--CCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015310           25 VLSNMYQAKAEGADVVEIRLD--CINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV  102 (409)
Q Consensus        25 ~~~~~~~~~~~~aD~vElRlD--~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv  102 (409)
                      ....++.+...|||++=.-.|  +|..  ..+.+..+++..++|+|.  +   +   |-.+  .| + +..+...|+|.|
T Consensus        72 ~~~~A~~~~~~GA~aisvlte~~~f~g--~~~~l~~v~~~v~iPvl~--k---d---fi~~--~~-q-i~~a~~~GAD~V  137 (260)
T PRK00278         72 PVEIAKAYEAGGAACLSVLTDERFFQG--SLEYLRAARAAVSLPVLR--K---D---FIID--PY-Q-IYEARAAGADAI  137 (260)
T ss_pred             HHHHHHHHHhCCCeEEEEecccccCCC--CHHHHHHHHHhcCCCEEe--e---e---ecCC--HH-H-HHHHHHcCCCEE
Confidence            445566666789999933223  3333  235677777778999994  1   1   3333  23 2 567778999988


Q ss_pred             EEeccC-ccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 015310          103 DFELKV-ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK  158 (409)
Q Consensus       103 DiEl~~-~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivK  158 (409)
                      =+-... ..+.+++++ .++.-|..+++-.|+.      +|+    +++.+.|+|++=
T Consensus       138 lLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~------~E~----~~A~~~gadiIg  185 (260)
T PRK00278        138 LLIVAALDDEQLKELLDYAHSLGLDVLVEVHDE------EEL----ERALKLGAPLIG  185 (260)
T ss_pred             EEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCH------HHH----HHHHHcCCCEEE
Confidence            877666 334556666 4566788999999972      344    446678999754

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=85.36  E-value=3.6  Score=41.31  Aligned_cols=61  Identities=18%  Similarity=0.360  Sum_probs=43.0

Q ss_pred             CcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015310          123 GTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA  185 (409)
Q Consensus       123 ~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~  185 (409)
                      +..|.+-.--...|-+.+.-.+++.++.+.||||+++|+.  +.+|...+-....+.++|+|+
T Consensus        25 ~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~--~~~~a~al~~I~~~~~iPlvA   85 (360)
T PRK00366         25 DAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVP--DMEAAAALPEIKKQLPVPLVA   85 (360)
T ss_pred             CCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccC--CHHHHHhHHHHHHcCCCCEEE
Confidence            3344333332334445667888899999999999999987  666776666666666888876

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=85.30  E-value=1.4  Score=43.88  Aligned_cols=38  Identities=18%  Similarity=0.194  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHH-hCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~-~~G~~i~v~nR~~  401 (409)
                      ..+.||++.|+|-|..||+++.-|. -+|++|..++|..
T Consensus       141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~  179 (323)
T PRK15409        141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH  179 (323)
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            3578999999999999999999887 7899999888863

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=85.28  E-value=36  Score=32.62  Aligned_cols=196  Identities=18%  Similarity=0.234  Sum_probs=109.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEe---------cC-CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRL---------DC-INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRl---------D~-l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      +.++.++-++...+.|.|.+|.=.         +. +...++.+.+..+++. .+.++..-++..    ..  .    .+
T Consensus        20 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~----~~--~----~~   89 (263)
T cd07943          20 TLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPG----IG--T----VD   89 (263)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCC----cc--C----HH
Confidence            345555556666778999999952         11 1122344556666543 245555444421    11  1    13


Q ss_pred             HHHHHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec--CC
Q 015310           90 ALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV--ND  165 (409)
Q Consensus        90 ll~~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~--~~  165 (409)
                      -++.+.+.|+++|-|-....+ +...+.+ .++..+.++.++.=+.... +.+++.++.+++.+.|+|.+=++=+.  -+
T Consensus        90 ~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~  168 (263)
T cd07943          90 DLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMA-SPEELAEQAKLMESYGADCVYVTDSAGAML  168 (263)
T ss_pred             HHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCC-CHHHHHHHHHHHHHcCCCEEEEcCCCCCcC
Confidence            367888889999888665543 1223333 4556677776665332222 35789999999999999998776332  25


Q ss_pred             HhHHHHHHHHhccC-CC-CEEEE------EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          166 ITEIARIFQLLSHC-QV-PIIAY------SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       166 ~~D~~~ll~~~~~~-~~-p~i~~------~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      +.++.++.+.+.+. +. |+ .+      +|+..-.+.   .-.-|..+.-+++.. +--.|+++.+++...++.
T Consensus       169 P~~v~~lv~~l~~~~~~~~l-~~H~Hn~~GlA~AN~la---Ai~aGa~~vd~s~~GlG~~aGN~~~E~lv~~L~~  239 (263)
T cd07943         169 PDDVRERVRALREALDPTPV-GFHGHNNLGLAVANSLA---AVEAGATRIDGSLAGLGAGAGNTPLEVLVAVLER  239 (263)
T ss_pred             HHHHHHHHHHHHHhCCCceE-EEEecCCcchHHHHHHH---HHHhCCCEEEeecccccCCcCCccHHHHHHHHHh
Confidence            78888888776543 32 32 22      122211111   112244333333322 223788888887766543

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=85.27  E-value=1.4  Score=43.98  Aligned_cols=37  Identities=35%  Similarity=0.484  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..+.||++-|+|.|..|+.++.-|..+|++|..+++.
T Consensus       138 ~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~  174 (324)
T COG0111         138 TELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPY  174 (324)
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCC
Confidence            4677999999999999999999999999999999993

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=85.19  E-value=1.1  Score=46.95  Aligned_cols=36  Identities=31%  Similarity=0.394  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ...+++|.|+|+|.++.++++-|.+.|..|+|+.|.
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~  155 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERV  155 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCc
Confidence            345799999999999999999999999999998775

>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function

Probab=85.19  E-value=25  Score=34.09  Aligned_cols=142  Identities=19%  Similarity=0.202  Sum_probs=85.9

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEec-CCCCC---CC---hhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLD-CINNF---QP---GKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD-~l~~~---~~---~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      +.+|+.+++.++.+.||-+|=+-+. --...   ++   .+.+..+|+. .++++=.|     -||....+.++|++.+.
T Consensus        24 tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~T-----tg~~~~~~~~~R~~~v~   98 (272)
T PF05853_consen   24 TPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPT-----TGGGGGPDPEERLAHVE   98 (272)
T ss_dssp             SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEE-----SSTTTTSGHHHHCTHHH
T ss_pred             CHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeC-----CCCCCCCCHHHHHHHHH
Confidence            7899999999999999999987665 22211   11   2445566655 56666666     23333456789998887


Q ss_pred             HHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHH
Q 015310           93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARI  172 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~l  172 (409)
                      ..   .+|..-+.+....                 .+..++.-.-+.+.+.+.++.|++.|   +|.-...-+..++..+
T Consensus        99 ~~---~pd~asl~~gs~n-----------------~~~~~~~~~n~~~~~~~~~~~~~e~G---i~pe~ev~d~~~l~~~  155 (272)
T PF05853_consen   99 AW---KPDMASLNPGSMN-----------------FGTRDRVYINTPADARELARRMRERG---IKPEIEVFDPGHLRNA  155 (272)
T ss_dssp             HH-----SEEEEE-S-EE-----------------ESGGCSEE---HHHHHHHHHHHHHTT----EEEEEESSHHHHHHH
T ss_pred             hc---CCCeEEecccccc-----------------cccCCceecCCHHHHHHHHHHHHHcC---CeEEEEEEcHHHHHHH
Confidence            76   5777666554422                 00122111123468999999999999   5777777788888777


Q ss_pred             HHHhccC---CCCEEEEEcCc
Q 015310          173 FQLLSHC---QVPIIAYSVGE  190 (409)
Q Consensus       173 l~~~~~~---~~p~i~~~MG~  190 (409)
                      ..+..+-   ....+-+.||.
T Consensus       156 ~~l~~~G~l~~p~~~~~vlG~  176 (272)
T PF05853_consen  156 RRLIEKGLLPGPLLVNFVLGV  176 (272)
T ss_dssp             HHHHHTTSS-SSEEEEEEES-
T ss_pred             HHHHHCCCCCCCeEEEEcccC
Confidence            7765432   33355556644

; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=85.16  E-value=1  Score=46.82  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=29.1

Q ss_pred             CEEEEEechhHHHHHHHHHHhC--CCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKSR--GARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~--G~~i~v~nR~  400 (409)
                      ..|+|||+|-+|.++||.|++.  |.+|+|+.+.
T Consensus        25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~   58 (460)
T TIGR03329        25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD   58 (460)
T ss_pred             eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            3699999999999999999998  7899999875

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=85.08  E-value=1.2  Score=46.34  Aligned_cols=32  Identities=34%  Similarity=0.404  Sum_probs=28.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEe
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFD  398 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~n  398 (409)
                      .+++++|||||-||.++|..|.++|+ .++|+-
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE   52 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILE   52 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEE
Confidence            45689999999999999999999998 888874

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=85.08  E-value=13  Score=34.67  Aligned_cols=127  Identities=14%  Similarity=0.143  Sum_probs=67.4

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCC-CEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHH
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGA-DVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL   88 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~a-D~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   88 (409)
                      .|.+..|+.+-+..++...+.+   .|+ .+++-|..-.+  ...+.++.+++..+.|+.+.+.-..       .+....
T Consensus         3 ~pi~~a~m~g~~~~~~~~~~~~---~G~ig~i~~~~~~~~--~~~~~~~~i~~~~~~~~~v~~i~~~-------~~~~~~   70 (236)
T cd04730           3 YPIIQAPMAGVSTPELAAAVSN---AGGLGFIGAGYLTPE--ALRAEIRKIRALTDKPFGVNLLVPS-------SNPDFE   70 (236)
T ss_pred             CCEECCCCCCCCCHHHHHHHHh---CCCccccCCCCCCHH--HHHHHHHHHHHhcCCCeEEeEecCC-------CCcCHH
Confidence            4677777777655555444433   343 44433221100  0012233444333457665554221       002334


Q ss_pred             HHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310           89 EALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF  161 (409)
Q Consensus        89 ~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~  161 (409)
                      +.++.+.+.|+|.|.+-.....+..+.+   ++.+.++|.+.|+      .    +.++++.+.|+|++++..
T Consensus        71 ~~~~~~~~~g~d~v~l~~~~~~~~~~~~---~~~~i~~i~~v~~------~----~~~~~~~~~gad~i~~~~  130 (236)
T cd04730          71 ALLEVALEEGVPVVSFSFGPPAEVVERL---KAAGIKVIPTVTS------V----EEARKAEAAGADALVAQG  130 (236)
T ss_pred             HHHHHHHhCCCCEEEEcCCCCHHHHHHH---HHcCCEEEEeCCC------H----HHHHHHHHcCCCEEEEeC
Confidence            5666778889999988655333444333   3457888888763      2    234455667999998743

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PLN02306 hydroxypyruvate reductase

Probab=85.07  E-value=1.4  Score=45.06  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHH-hCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~-~~G~~i~v~nR~~  401 (409)
                      ..+.||++.|+|.|..|++++.-|. -+|++|..++|+.
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~  199 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            3578999999999999999999885 7899999999875

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=85.06  E-value=1.7  Score=43.44  Aligned_cols=40  Identities=23%  Similarity=0.173  Sum_probs=33.5

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|.+++|.|+|+.|.+++..+...|++++++.++.++.+.
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~  219 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREE  219 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            5789999999999999999899999988877777665443

>PLN02827 Alcohol dehydrogenase-like

Probab=85.04  E-value=1.7  Score=43.93  Aligned_cols=40  Identities=38%  Similarity=0.519  Sum_probs=34.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+++|.|+|+.|.+++..+...|+ .|++++++.+|.+.
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~  233 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEK  233 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence            47899999999999999998899999 68888877776543

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=84.99  E-value=1.4  Score=43.96  Aligned_cols=38  Identities=29%  Similarity=0.408  Sum_probs=35.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++||++-|+|.|..|++++.-++-.|++|..++|+.
T Consensus       142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~  179 (324)
T COG1052         142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSP  179 (324)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCC
Confidence            56789999999999999999999998888999999986

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=84.88  E-value=1.4  Score=48.65  Aligned_cols=38  Identities=24%  Similarity=0.212  Sum_probs=33.4

Q ss_pred             CCEEEEEechhHHHHHHHHHH-hCCCeEEEEeCChHHHH
Q 015310          368 GRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFEQSL  405 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~-~~G~~i~v~nR~~~ka~  405 (409)
                      -++|.|||||-+|+.|++.++ ..|++|++++++.+..+
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~  347 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGIN  347 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence            368999999999999999998 77999999999876543

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=84.81  E-value=1.8  Score=42.32  Aligned_cols=41  Identities=32%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~ka~~l  407 (409)
                      .+.+++|+|+|+.+++++..+..+|++ |+++.++.++.+.+
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~  200 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELA  200 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH
Confidence            467999999999999999999999995 99999988776543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=84.77  E-value=1.9  Score=42.46  Aligned_cols=40  Identities=25%  Similarity=0.343  Sum_probs=34.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .+++++|.|+|+.+.+++..+...|++|+++.++.++.+.
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~  202 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADL  202 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence            4679999999999999999999999999999988776543

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PTZ00367 squalene epoxidase; Provisional

Probab=84.77  E-value=1.1  Score=48.22  Aligned_cols=33  Identities=24%  Similarity=0.425  Sum_probs=30.9

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|+|+|-+|.++|.+|.+.|.+|.|+.|+.
T Consensus        34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            479999999999999999999999999999975

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=84.77  E-value=8.4  Score=38.78  Aligned_cols=82  Identities=16%  Similarity=0.042  Sum_probs=50.9

Q ss_pred             HHHHHHHHHhcCCCEEEEEecC-------CCCC-C---C-------------hhHHHHHHhcCCCcEEEEeccCC-CCCC
Q 015310           25 VLSNMYQAKAEGADVVEIRLDC-------INNF-Q---P-------------GKDLEIILTKKPLPVLIVYRPKW-AGGL   79 (409)
Q Consensus        25 ~~~~~~~~~~~~aD~vElRlD~-------l~~~-~---~-------------~~~l~~l~~~~~~PiI~T~R~~~-eGG~   79 (409)
                      +...++++.+.|.|.||+-.-.       |... +   +             .+.++.+|+..+.++.+-+|-.. |...
T Consensus       139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~  218 (353)
T cd02930         139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE  218 (353)
T ss_pred             HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence            3444566677899999997642       1211 1   1             13445566656666666677543 2111


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310           80 YEGDEHKRLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g~dyvDiEl  106 (409)
                      ...+.++-.++.+.+-+.|+|||+|-.
T Consensus       219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~  245 (353)
T cd02930         219 GGSTWEEVVALAKALEAAGADILNTGI  245 (353)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence            113667788888998889999999843

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=84.75  E-value=1.9  Score=43.22  Aligned_cols=40  Identities=30%  Similarity=0.437  Sum_probs=34.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+++|+|+|+.|.+++..+..+|+ +|+++.++.+|.+.
T Consensus       184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~  224 (365)
T cd08277         184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEK  224 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            47899999999999999998889999 79999988777553

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=84.75  E-value=1.7  Score=43.45  Aligned_cols=41  Identities=17%  Similarity=0.243  Sum_probs=36.8

Q ss_pred             CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la  408 (409)
                      -+...|||+|.-|+.-+.++... ++ +|.|++|+++++++++
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a  172 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFA  172 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHH
Confidence            36899999999999999999876 56 8999999999999876

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=84.72  E-value=37  Score=32.25  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             EeeccCCHHHHHHHHHHHHhcCCCEEEEEecC
Q 015310           15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDC   46 (409)
Q Consensus        15 v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~   46 (409)
                      ++.-.++.+...+.++...+.|+|++|+-+=+
T Consensus         6 ~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPf   37 (242)
T cd04724           6 ITAGDPDLETTLEILKALVEAGADIIELGIPF   37 (242)
T ss_pred             EeCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            56677899999999999888899999998744

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=84.63  E-value=1.5  Score=48.31  Aligned_cols=37  Identities=24%  Similarity=0.211  Sum_probs=32.8

Q ss_pred             CEEEEEechhHHHHHHHHHH-hCCCeEEEEeCChHHHH
Q 015310          369 RMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFEQSL  405 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~-~~G~~i~v~nR~~~ka~  405 (409)
                      ++|.|||||-+|+.+++.++ ..|++|++++++++..+
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~  342 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGIN  342 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence            68999999999999999988 58999999999976543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=84.63  E-value=1.9  Score=43.53  Aligned_cols=41  Identities=29%  Similarity=0.515  Sum_probs=35.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .+.+++|+|+|+.+.+++..+..+|+ +|+++.++.++.+.+
T Consensus       190 ~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a  231 (373)
T cd08299         190 PGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA  231 (373)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            47899999999999999999999999 899999888776543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=84.59  E-value=2.1  Score=41.72  Aligned_cols=41  Identities=29%  Similarity=0.362  Sum_probs=34.4

Q ss_pred             CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|.+++|.| +|+.|.+++..+...|++|+.+.++.++.+.+
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l  184 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWL  184 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            478999999 59999999888888999988888887776544

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]

Probab=84.54  E-value=24  Score=33.06  Aligned_cols=174  Identities=13%  Similarity=0.124  Sum_probs=97.3

Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015310           83 DEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS  162 (409)
Q Consensus        83 ~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~  162 (409)
                      +.+.+.++.+++.++|.+.=.=|+..+-....+++...+-.--+|++--          .++-++.......+-|=|..-
T Consensus        49 tk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~----------a~~dF~gidTs~pn~VVigla  118 (262)
T KOG3040|consen   49 TKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDD----------ALEDFDGIDTSDPNCVVIGLA  118 (262)
T ss_pred             cchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEccc----------chhhCCCccCCCCCeEEEecC
Confidence            4567788999999999765444565655444555533233344566532          222222222223444444444


Q ss_pred             cC--CHhHHHHHHHHhccC-CCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhccccccce
Q 015310          163 VN--DITEIARIFQLLSHC-QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTK  239 (409)
Q Consensus       163 ~~--~~~D~~~ll~~~~~~-~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~i~~~~~  239 (409)
                      |+  +.+..-+-++++.+. +.++|+|+-|..-  -|.-++.+|. =+|                 ...+++.    ...
T Consensus       119 pe~F~y~~ln~AFrvL~e~~k~~LIai~kgryy--kr~~Gl~lgp-G~f-----------------v~aLeya----tg~  174 (262)
T KOG3040|consen  119 PEGFSYQRLNRAFRVLLEMKKPLLIAIGKGRYY--KRVDGLCLGP-GPF-----------------VAALEYA----TGC  174 (262)
T ss_pred             cccccHHHHHHHHHHHHcCCCCeEEEecCceee--eeccccccCc-hHH-----------------HHHhhhc----cCc
Confidence            44  556666677777666 4678888877653  3555554443 122                 2233332    123


Q ss_pred             EEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCCeEEE
Q 015310          240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSV  295 (409)
Q Consensus       240 ~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~nV  295 (409)
                      ..-++|.|     ||.++..+++.+|++..-..+--+|+.+=+-...+.+.+|+-|
T Consensus       175 ~a~vvGKP-----~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilV  225 (262)
T KOG3040|consen  175 EATVVGKP-----SPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILV  225 (262)
T ss_pred             eEEEecCC-----CHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEe
Confidence            46789999     9999999999999875322221133333222333456666655

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=84.41  E-value=2  Score=41.77  Aligned_cols=40  Identities=23%  Similarity=0.174  Sum_probs=34.7

Q ss_pred             CCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       368 ~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +++++|.|+ |+.|.+++..+...|++|+++.++.++.+.+
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~  187 (326)
T cd08289         147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL  187 (326)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence            579999998 9999999999999999999889888776543

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PLN02712 arogenate dehydrogenase

Probab=84.40  E-value=2.3  Score=46.69  Aligned_cols=37  Identities=22%  Similarity=0.191  Sum_probs=33.0

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      +.+++.|||.|.+|++++.+|.+.|.+|++++|+..+
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~   87 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS   87 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            4568999999999999999999999999999998544

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=84.40  E-value=26  Score=31.50  Aligned_cols=135  Identities=21%  Similarity=0.248  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCChh---HHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +++++.++++.+.|+++|=+|.=-+...+-.+   .+..+.+..+.|+|+.-|               .   +.+.+.++
T Consensus        12 ~~~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~---------------~---~la~~~~~   73 (180)
T PF02581_consen   12 DDFLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDR---------------V---DLALELGA   73 (180)
T ss_dssp             CHHHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES----------------H---HHHHHCT-
T ss_pred             chHHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCC---------------H---HHHHhcCC
Confidence            56777788888999999999986443321112   223333456789998743               2   24566889


Q ss_pred             cEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CH-----hHHHHH
Q 015310          100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DI-----TEIARI  172 (409)
Q Consensus       100 dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~-----~D~~~l  172 (409)
                      |.|=+.....+.  .+.......+..+=.|.|+      .+|    +.++.+.|+|.+=+--.-.  +.     .....+
T Consensus        74 dGvHl~~~~~~~--~~~r~~~~~~~~ig~S~h~------~~e----~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l  141 (180)
T PF02581_consen   74 DGVHLGQSDLPP--AEARKLLGPDKIIGASCHS------LEE----AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGL  141 (180)
T ss_dssp             SEEEEBTTSSSH--HHHHHHHTTTSEEEEEESS------HHH----HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHH
T ss_pred             CEEEecccccch--HHhhhhcccceEEEeecCc------HHH----HHHhhhcCCCEEEECCccCCCCCccccccCHHHH
Confidence            998886654321  1122112345667779997      233    6677788999887664411  11     133444


Q ss_pred             HHHhccCCCCEEEEE
Q 015310          173 FQLLSHCQVPIIAYS  187 (409)
Q Consensus       173 l~~~~~~~~p~i~~~  187 (409)
                      .++....++|+++++
T Consensus       142 ~~~~~~~~~pv~AlG  156 (180)
T PF02581_consen  142 REIARASPIPVYALG  156 (180)
T ss_dssp             HHHHHHTSSCEEEES
T ss_pred             HHHHHhCCCCEEEEc
Confidence            444555678888764

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=84.36  E-value=5.1  Score=44.69  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhcCCCEEEEEecC-------CCCC----CC-------------hhHHHHHHhcC--CCcEEEEeccC--CC
Q 015310           25 VLSNMYQAKAEGADVVEIRLDC-------INNF----QP-------------GKDLEIILTKK--PLPVLIVYRPK--WA   76 (409)
Q Consensus        25 ~~~~~~~~~~~~aD~vElRlD~-------l~~~----~~-------------~~~l~~l~~~~--~~PiI~T~R~~--~e   76 (409)
                      +.+.++++.+.|.|.||+-.-+       |...    .+             .+.++.+++..  +.|+-+-++..  .+
T Consensus       553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~  632 (765)
T PRK08255        553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE  632 (765)
T ss_pred             HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence            4445666677899999997662       1111    01             13334444443  34555555432  12


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           77 GGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      ||   .+.++..++.+.+.+.|+|||||-
T Consensus       633 ~g---~~~~~~~~~~~~l~~~g~d~i~vs  658 (765)
T PRK08255        633 GG---NTPDDAVEIARAFKAAGADLIDVS  658 (765)
T ss_pred             CC---CCHHHHHHHHHHHHhcCCcEEEeC
Confidence            33   356778888888888999999984

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=84.26  E-value=21  Score=33.08  Aligned_cols=104  Identities=11%  Similarity=0.078  Sum_probs=67.5

Q ss_pred             EEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      +|+.+-..+.++.++.++++ ...+|++|+-+|++..... +.++.+++. ..++++=+... +-|.   +.+.+   .+
T Consensus         1 ~ivAlD~~~~~~a~~~~~~~-~~~v~~iKig~~l~~~~G~-~~v~~l~~~-~~~v~lD~K~~-Dig~---t~~~~---~~   70 (213)
T TIGR01740         1 LIVALDVTTKDEALDLADSL-GPEIEVIKVGIDLLLDGGD-KIIDELAKL-NKLIFLDLKFA-DIPN---TVKLQ---YE   70 (213)
T ss_pred             CEEECCCCCHHHHHHHHHhc-CCcCcEEEECHHHHHhcCH-HHHHHHHHc-CCCEEEEEeec-chHH---HHHHH---HH
Confidence            58899899999999888775 3337999999999986654 356666553 34666666542 1111   22233   34


Q ss_pred             HHHHcCCcEEEEeccCccchHHHHHh-ccCCCcEE
Q 015310           93 LAEDLGADYVDFELKVASNILGKQYS-SHQSGTRF  126 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~~~~~~l~~-~~~~~~ki  126 (409)
                      .+.+.|+|++-|=.....+.++.++. .++.+.++
T Consensus        71 ~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v  105 (213)
T TIGR01740        71 SKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGL  105 (213)
T ss_pred             HHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeE
Confidence            46789999999988777665665552 33334433

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=84.20  E-value=2.2  Score=41.43  Aligned_cols=41  Identities=34%  Similarity=0.426  Sum_probs=35.1

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+.+++|.|+ |+.|++++..+...|++|+.+.|+.++.+.+
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~  203 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL  203 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            4678999997 8899999999999999988888887776554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=84.00  E-value=2.1  Score=42.38  Aligned_cols=40  Identities=23%  Similarity=0.358  Sum_probs=35.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|++++|.|+|+.|.+++..+..+|+ +|+++.++.++.+.
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~  212 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARREL  212 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            47899999999999999999999999 89999988887654

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=83.94  E-value=28  Score=32.75  Aligned_cols=134  Identities=11%  Similarity=0.060  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHhcC-CCEEEEEecCCCCCCCh---hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015310           23 EQVLSNMYQAKAEG-ADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (409)
Q Consensus        23 ~e~~~~~~~~~~~~-aD~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (409)
                      +++...++.++..| +++|-+|---+...+-.   +++..+.+..+.|+|+.-|                  +..+.+.|
T Consensus        26 ~~~~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~------------------~dlA~~~~   87 (221)
T PRK06512         26 AELAKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGAAALIAGD------------------SRIAGRVK   87 (221)
T ss_pred             ccHHHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCH------------------HHHHHHhC
Confidence            46777888888899 69999995544322111   2233333445789997732                  34566778


Q ss_pred             CcEEEEeccCccchHHHHHhccCCCcEEEE-e-ccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec-CCHh----HHHH
Q 015310           99 ADYVDFELKVASNILGKQYSSHQSGTRFIV-S-CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV-NDIT----EIAR  171 (409)
Q Consensus        99 ~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~-S-~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~-~~~~----D~~~  171 (409)
                      +|.|=+--+...  +.+.+.. .+..++|+ | +|+      .++.    .++.+.|||++=+=-.. .+..    --+.
T Consensus        88 adGVHLg~~d~~--~~~~r~~-~~~~~iiG~s~~~s------~~~a----~~A~~~gaDYv~~Gpv~t~tK~~~~p~gl~  154 (221)
T PRK06512         88 ADGLHIEGNLAA--LAEAIEK-HAPKMIVGFGNLRD------RHGA----MEIGELRPDYLFFGKLGADNKPEAHPRNLS  154 (221)
T ss_pred             CCEEEECccccC--HHHHHHh-cCCCCEEEecCCCC------HHHH----HHhhhcCCCEEEECCCCCCCCCCCCCCChH
Confidence            888765422111  1222211 13345676 5 343      2333    23557899988653211 1111    1123


Q ss_pred             HH-HHhccCCCCEEEEE
Q 015310          172 IF-QLLSHCQVPIIAYS  187 (409)
Q Consensus       172 ll-~~~~~~~~p~i~~~  187 (409)
                      ++ .+....++|+++++
T Consensus       155 ~l~~~~~~~~iPvvAIG  171 (221)
T PRK06512        155 LAEWWAEMIEIPCIVQA  171 (221)
T ss_pred             HHHHHHHhCCCCEEEEe
Confidence            34 23344578888875

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=83.92  E-value=2.2  Score=42.01  Aligned_cols=41  Identities=34%  Similarity=0.499  Sum_probs=35.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ++++++|.|+|+.+.+++..+...|++|+++.++.++.+.+
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~  205 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELA  205 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence            47899999999999999999999999988888887775543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3

Probab=83.87  E-value=4.2  Score=39.59  Aligned_cols=96  Identities=14%  Similarity=0.132  Sum_probs=67.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEeccCc---------------cchHHHHH-hccCCCcEEEEeccCCCC--CC-CHh
Q 015310           80 YEGDEHKRLEALHLAEDLGADYVDFELKVA---------------SNILGKQY-SSHQSGTRFIVSCNLDCE--TP-SEE  140 (409)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~---------------~~~~~~l~-~~~~~~~kiI~S~H~f~~--tp-~~~  140 (409)
                      ...+-+.+.+.+..|.+.|.+|+=|+-...               ...+++|+ -+++++++|++=+|.-..  +. -..
T Consensus        27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~  106 (273)
T PF10566_consen   27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEK  106 (273)
T ss_dssp             BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHH
Confidence            345667888889999999999998876553               34567777 467899999998886220  01 122


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHH
Q 015310          141 DLGYLVSRMQATGADIIKLVFSVNDITEIARIFQL  175 (409)
Q Consensus       141 ~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~  175 (409)
                      ++.+.+.++++.|..-+|+=.+..+.+...+..+-
T Consensus       107 ~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~  141 (273)
T PF10566_consen  107 QLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYED  141 (273)
T ss_dssp             CHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHH
Confidence            37888999999999999999999988777655433

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=83.82  E-value=2.1  Score=39.53  Aligned_cols=35  Identities=31%  Similarity=0.404  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310          364 SPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD  398 (409)
Q Consensus       364 ~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n  398 (409)
                      .+++||+++|+|-+. .|+.++.-|.+.|+.|++++
T Consensus        58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~   93 (197)
T cd01079          58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVD   93 (197)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEe
Confidence            478999999999877 99999999999999999994

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=83.81  E-value=39  Score=31.80  Aligned_cols=143  Identities=15%  Similarity=0.090  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .+.+++.+.++++.+.+...|=+.--+.      ....+.++..+..+- |+=.-+.|..   .-+.+..-.+.+++.|+
T Consensus        19 ~t~~~i~~~~~~A~~~~~~avcv~p~~v------~~a~~~l~~~~v~v~-tVigFP~G~~---~~~~K~~e~~~Ai~~GA   88 (221)
T PRK00507         19 ATEEDIDKLCDEAKEYGFASVCVNPSYV------KLAAELLKGSDVKVC-TVIGFPLGAN---TTAVKAFEAKDAIANGA   88 (221)
T ss_pred             CCHHHHHHHHHHHHHhCCeEEEECHHHH------HHHHHHhCCCCCeEE-EEecccCCCC---hHHHHHHHHHHHHHcCC
Confidence            4578888888888777666653332211      122233333344443 4434445433   23455555678889999


Q ss_pred             cEEEEeccCcc-------chHHHHH---hc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee----cC
Q 015310          100 DYVDFELKVAS-------NILGKQY---SS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS----VN  164 (409)
Q Consensus       100 dyvDiEl~~~~-------~~~~~l~---~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~----~~  164 (409)
                      +-||+=++...       .+.+++.   .. +..-.|+|+---+.    +.+++....+-+.+.|+|++|--+.    ..
T Consensus        89 ~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L----~~e~i~~a~~~~~~agadfIKTsTG~~~~ga  164 (221)
T PRK00507         89 DEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLL----TDEEKVKACEIAKEAGADFVKTSTGFSTGGA  164 (221)
T ss_pred             ceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcC----CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC
Confidence            99997655421       1222332   22 23357888765433    4577888888888999999997554    34


Q ss_pred             CHhHHHHHHHHh
Q 015310          165 DITEIARIFQLL  176 (409)
Q Consensus       165 ~~~D~~~ll~~~  176 (409)
                      +.+|+..+.+..
T Consensus       165 t~~~v~~m~~~~  176 (221)
T PRK00507        165 TVEDVKLMRETV  176 (221)
T ss_pred             CHHHHHHHHHHh
Confidence            567776655543

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=83.71  E-value=28  Score=33.62  Aligned_cols=169  Identities=15%  Similarity=0.214  Sum_probs=84.4

Q ss_pred             EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHH-hcCCCcEEE-E
Q 015310           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIIL-TKKPLPVLI-V   70 (409)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~-~~~~~PiI~-T   70 (409)
                      .++.-.|+.+...+.++.+.+.|+|++|+-+-+-++.-+.                     +.+++++ +..+.|+++ |
T Consensus        15 yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~   94 (259)
T PF00290_consen   15 YITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMT   94 (259)
T ss_dssp             EEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEe
Confidence            3456678899999989888888999999999887655331                     2345556 556899764 5


Q ss_pred             eccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE---EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHH
Q 015310           71 YRPKWAGGLYEGDEHKRLEALHLAEDLGADYV---DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVS  147 (409)
Q Consensus        71 ~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv---DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~  147 (409)
                      +-+.       .-.--.-++++.+.+.|++-+   |+-++..+++.. .  .++.+...|.=.-  -.|| .+.+..+.+
T Consensus        95 Y~N~-------i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~-~--~~~~gl~~I~lv~--p~t~-~~Ri~~i~~  161 (259)
T PF00290_consen   95 YYNP-------IFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE-A--AKKHGLDLIPLVA--PTTP-EERIKKIAK  161 (259)
T ss_dssp             -HHH-------HHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH-H--HHHTT-EEEEEEE--TTS--HHHHHHHHH
T ss_pred             eccH-------HhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH-H--HHHcCCeEEEEEC--CCCC-HHHHHHHHH
Confidence            4321       000112346777888886644   333322222222 2  2335555443211  1133 233333333


Q ss_pred             HHHHcCCCEEEEEeecCC------HhHHHHHHHHhccC-CCCEE-EEEcCccchhhhhh
Q 015310          148 RMQATGADIIKLVFSVND------ITEIARIFQLLSHC-QVPII-AYSVGERGLVSQLL  198 (409)
Q Consensus       148 ~~~~~gaDivKia~~~~~------~~D~~~ll~~~~~~-~~p~i-~~~MG~~G~~SRi~  198 (409)
                      ...  | -|+=++.+..+      ..++...++..++. +.|++ +|+-...-....+.
T Consensus       162 ~a~--g-FiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~  217 (259)
T PF00290_consen  162 QAS--G-FIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA  217 (259)
T ss_dssp             H-S--S-EEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH
T ss_pred             hCC--c-EEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH
Confidence            321  2 34444455432      23455555555443 67743 44444444555555

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=83.65  E-value=1.9  Score=40.95  Aligned_cols=39  Identities=36%  Similarity=0.314  Sum_probs=34.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChHHHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~ka~  405 (409)
                      ++.+++|.|+|++|.+++..+..+|++ |+++.++.++.+
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~  136 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRE  136 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHH
Confidence            578999999999999999999999996 999998887765

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair

Probab=83.62  E-value=40  Score=32.27  Aligned_cols=26  Identities=31%  Similarity=0.284  Sum_probs=18.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCIN   48 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~   48 (409)
                      -+.++.+   +.+.+.|.|.||+.+|...
T Consensus        10 ~~l~~~l---~~a~~~G~d~vEl~~~~~~   35 (279)
T cd00019          10 FGLENAL---KRAKEIGFDTVAMFLGNPR   35 (279)
T ss_pred             ccHHHHH---HHHHHcCCCEEEEEcCCCC
Confidence            4445554   4556679999999998764

Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=83.61  E-value=2.1  Score=41.91  Aligned_cols=41  Identities=27%  Similarity=0.292  Sum_probs=35.0

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCC-CeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G-~~i~v~nR~~~ka~~l  407 (409)
                      .+++++|.|+|+.|.+++..+..+| .+|+.+.++.++.+.+
T Consensus       167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~  208 (340)
T cd05284         167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLA  208 (340)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH
Confidence            4789999999999999999999999 5998888887776543

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=83.57  E-value=2.7  Score=43.02  Aligned_cols=52  Identities=29%  Similarity=0.348  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          340 EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       340 ~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      +|...+.+..+...         +.+++|++|.|-|.|-+|+-++.-|.++|++|+.++-+
T Consensus       188 ~Gv~~~~~~a~~~~---------g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds  239 (411)
T COG0334         188 YGVFYAIREALKAL---------GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDS  239 (411)
T ss_pred             eehHHHHHHHHHHc---------CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcC
Confidence            45556655444321         24589999999999999999999999999987776644

>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli

Probab=83.56  E-value=4.2  Score=40.83  Aligned_cols=50  Identities=16%  Similarity=0.398  Sum_probs=34.4

Q ss_pred             CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhcc-----CCCCEEE
Q 015310          134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIA  185 (409)
Q Consensus       134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~-----~~~p~i~  185 (409)
                      ..|-+.+...+++.++.+.||||+++|+.  +.++...+-+...+     .++|+++
T Consensus        25 t~t~Dv~atv~QI~~L~~aGceivRvavp--~~~~a~al~~I~~~l~~~g~~iPlVA   79 (359)
T PF04551_consen   25 TDTRDVEATVAQIKRLEEAGCEIVRVAVP--DMEAAEALKEIKKRLRALGSPIPLVA   79 (359)
T ss_dssp             S-TT-HHHHHHHHHHHHHCT-SEEEEEE---SHHHHHHHHHHHHHHHCTT-SS-EEE
T ss_pred             CCcccHHHHHHHHHHHHHcCCCEEEEcCC--CHHHHHHHHHHHHhhccCCCCCCeee
Confidence            34556677889999999999999999998  66666666666555     5788886

It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=83.54  E-value=1.4  Score=44.70  Aligned_cols=33  Identities=24%  Similarity=0.435  Sum_probs=29.4

Q ss_pred             CCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~  400 (409)
                      ...++|||+|-+|.+++|.|++. |. +|+|+.|.
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~   64 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG   64 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence            34699999999999999999985 96 99999986

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=83.47  E-value=1.3  Score=48.18  Aligned_cols=31  Identities=32%  Similarity=0.375  Sum_probs=28.3

Q ss_pred             EEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          370 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .|||||+|+||.++|..+++.|++|.|+...
T Consensus        31 DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~   61 (617)
T PTZ00139         31 DAVVVGAGGAGLRAALGLVELGYKTACISKL   61 (617)
T ss_pred             CEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence            5999999999999999999999999988764

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=83.46  E-value=1.3  Score=45.98  Aligned_cols=35  Identities=20%  Similarity=0.172  Sum_probs=31.5

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++.+|+|+|+||.|.-++..|...|+ +++|++-+
T Consensus        18 L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~   53 (425)
T cd01493          18 LESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGS   53 (425)
T ss_pred             HhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCC
Confidence            456789999999999999999999999 99999754

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=83.45  E-value=1.1  Score=48.83  Aligned_cols=34  Identities=21%  Similarity=0.165  Sum_probs=30.6

Q ss_pred             CEEEEEechhHHHHHHHHHHhC-CCeEEEEeCChH
Q 015310          369 RMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDFE  402 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~-G~~i~v~nR~~~  402 (409)
                      ..|+|+|||.+|.+++..|++. |+++.|+.|..+
T Consensus        33 ~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         33 VDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            4799999999999999999995 999999998753

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=83.43  E-value=21  Score=35.77  Aligned_cols=152  Identities=8%  Similarity=0.109  Sum_probs=85.4

Q ss_pred             EEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE---------eccC------ccchHHHHHhccCCCcEEEEeccCC
Q 015310           69 IVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF---------ELKV------ASNILGKQYSSHQSGTRFIVSCNLD  133 (409)
Q Consensus        69 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDi---------El~~------~~~~~~~l~~~~~~~~kiI~S~H~f  133 (409)
                      .|+|.-.+.=.+..+.++..++.+.+.+.|+++|.+         .+..      +.+.++.+... .+++++.+-.   
T Consensus         8 ~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~-~~~~~~~~ll---   83 (333)
T TIGR03217         8 VTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADV-VKRAKVAVLL---   83 (333)
T ss_pred             CCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHh-CCCCEEEEEe---
Confidence            466633332235668899999999999999999888         2221      11334444432 2345544222   


Q ss_pred             CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEE-EcCcc---chhh---hhhcCCCCCcc
Q 015310          134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAY-SVGER---GLVS---QLLSPKFNGAL  206 (409)
Q Consensus       134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~-~MG~~---G~~S---Ri~~~~~Gs~l  206 (409)
                        .|..... +-++.+.+.|+|++.+++..++.+......+..++....+... .|...   ..+.   +.+.. +|...
T Consensus        84 --~pg~~~~-~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~-~Ga~~  159 (333)
T TIGR03217        84 --LPGIGTV-HDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMES-YGADC  159 (333)
T ss_pred             --ccCccCH-HHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHh-cCCCE
Confidence              1211112 3468888999999999998887776666676666655544333 33321   1111   22221 34332


Q ss_pred             ccccCCCCCCCCCCCHHHHHhhhhhc
Q 015310          207 VYGSLKGTPVLGLPTVESLRQTYKVE  232 (409)
Q Consensus       207 tf~~l~~~sAPGQ~~~~~l~~~~~~~  232 (409)
                      .|  +.  -.-|.++-+++.++++.+
T Consensus       160 i~--i~--DT~G~~~P~~v~~~v~~l  181 (333)
T TIGR03217       160 VY--IV--DSAGAMLPDDVRDRVRAL  181 (333)
T ss_pred             EE--Ec--cCCCCCCHHHHHHHHHHH
Confidence            21  11  224677777777777654

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=83.35  E-value=1.8  Score=43.30  Aligned_cols=40  Identities=23%  Similarity=0.270  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.||++.|+|.|..|++++.-|...|+.|.-.+|+..+
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~  197 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLP  197 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCc
Confidence            5678999999999999999999999999878888887553

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=83.29  E-value=2.4  Score=40.49  Aligned_cols=41  Identities=32%  Similarity=0.397  Sum_probs=35.4

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +|++++|.|+ |+.+++++..+...|++|+++.++.++.+.+
T Consensus       144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~  185 (325)
T cd08253         144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELV  185 (325)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            5789999995 9999999999999999999999988776554

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=83.24  E-value=32  Score=34.45  Aligned_cols=154  Identities=14%  Similarity=0.102  Sum_probs=94.5

Q ss_pred             CCCCHHHHHhhhhhc----c---------ccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecC---c---ccH
Q 015310          218 GLPTVESLRQTYKVE----H---------INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMF---V---DDL  278 (409)
Q Consensus       218 GQ~~~~~l~~~~~~~----~---------i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~---~---~~l  278 (409)
                      -|++-+++..+++..    .         ....+...-+|=.|-.  |+-.=+..+.++||....|....   +   +.+
T Consensus        14 ~dls~~ei~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~epST--RTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl   91 (331)
T PRK02102         14 LDFTPEEIEYLIDLSIELKAAKKAGIEHQYLEGKNIALIFEKTST--RTRCAFEVAAIDLGAHVTYLGPNDSQLGKKESI   91 (331)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHhhcCCCcccCCCCEEEEEeCCCCh--hHHHHHHHHHHHcCCCEEEcCcccccCCCCcCH
Confidence            456777777776521    1         0111223445556543  56666789999999998877433   1   567


Q ss_pred             HHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCC
Q 015310          279 KKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG  358 (409)
Q Consensus       279 ~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~  358 (409)
                      .+....+... ++++-+=-|-...+-.+       |+..+ + -|++-. ++  ..+=|-...=+.++++.+        
T Consensus        92 ~Dt~rvls~y-~D~iviR~~~~~~~~~~-------a~~~~-v-PVINa~-~~--~~HPtQaLaDl~Ti~e~~--------  150 (331)
T PRK02102         92 EDTARVLGRM-YDGIEYRGFKQEIVEEL-------AKYSG-V-PVWNGL-TD--EWHPTQMLADFMTMKEHF--------  150 (331)
T ss_pred             HHHHHHHhhc-CCEEEEECCchHHHHHH-------HHhCC-C-CEEECC-CC--CCChHHHHHHHHHHHHHh--------
Confidence            7777777544 67776665543322222       22211 1 133321 22  345555555555665433        


Q ss_pred             CCCCCCCCCCCEEEEEech--hHHHHHHHHHHhCCCeEEEEeC
Q 015310          359 TASFGSPLAGRMFVLAGAG--GAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       359 ~~~~~~~~~~~~vlvlGaG--Gaarai~~aL~~~G~~i~v~nR  399 (409)
                           ..++|.+++++|.+  +++++.+..+..+|++|+++.-
T Consensus       151 -----g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P  188 (331)
T PRK02102        151 -----GPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAP  188 (331)
T ss_pred             -----CCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECC
Confidence                 24789999999997  7999999999999999988863

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=83.17  E-value=2.4  Score=40.38  Aligned_cols=41  Identities=32%  Similarity=0.308  Sum_probs=34.7

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ++++++|.|+ |+.+++++..+...|++|+++.++.++.+.+
T Consensus       139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~  180 (323)
T cd05276         139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC  180 (323)
T ss_pred             CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            5789999996 8899999999999999999999887765543

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=83.11  E-value=7.6  Score=38.83  Aligned_cols=79  Identities=23%  Similarity=0.267  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecC-------CCCC-C---C-------------hhHHHHHHhcCC--CcEEEEeccC--C
Q 015310           24 QVLSNMYQAKAEGADVVEIRLDC-------INNF-Q---P-------------GKDLEIILTKKP--LPVLIVYRPK--W   75 (409)
Q Consensus        24 e~~~~~~~~~~~~aD~vElRlD~-------l~~~-~---~-------------~~~l~~l~~~~~--~PiI~T~R~~--~   75 (409)
                      ++.+.++++.+.|.|.||+-.-+       |... +   +             .+.++.+++...  .|+.+-+...  .
T Consensus       150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~  229 (338)
T cd04733         150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ  229 (338)
T ss_pred             HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence            34455667777999999998775       3222 1   1             134455555553  4554444321  1


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           76 AGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        76 eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      ++|   .+.++-.++.+.+.+.|+|||.|=
T Consensus       230 ~~g---~~~eea~~ia~~Le~~Gvd~iev~  256 (338)
T cd04733         230 RGG---FTEEDALEVVEALEEAGVDLVELS  256 (338)
T ss_pred             CCC---CCHHHHHHHHHHHHHcCCCEEEec
Confidence            234   256777888888888999998763

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=83.05  E-value=44  Score=32.34  Aligned_cols=127  Identities=19%  Similarity=0.211  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHH---H---hcCCCcEEEEe--ccCCCCCCCCCCHHHHHHHHHHH
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII---L---TKKPLPVLIVY--RPKWAGGLYEGDEHKRLEALHLA   94 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l---~---~~~~~PiI~T~--R~~~eGG~~~~~~~~~~~ll~~~   94 (409)
                      ..+....+++...|+|+|=.-+=.-.+.+ .++++.+   +   +...+|++.-.  |.+.-.-.+..+.+.--..-+.+
T Consensus        97 ~~~~~~ve~ai~lgadAV~~~Vy~Gse~e-~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRla  175 (265)
T COG1830          97 QVLVATVEDAIRLGADAVGATVYVGSETE-REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLA  175 (265)
T ss_pred             ceeeeeHHHHHhCCCcEEEEEEecCCcch-HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHH
Confidence            33455677777899999999987666544 3344443   3   23589988744  43321111223322222234477


Q ss_pred             HHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCC
Q 015310           95 EDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGA  154 (409)
Q Consensus        95 ~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~ga  154 (409)
                      .++|+|.|=+-+....+-+++++..  -++.||+|==  .++.+.+++++......+.||
T Consensus       176 aelGADIiK~~ytg~~e~F~~vv~~--~~vpVviaGG--~k~~~~~~~l~~~~~ai~aGa  231 (265)
T COG1830         176 AELGADIIKTKYTGDPESFRRVVAA--CGVPVVIAGG--PKTETEREFLEMVTAAIEAGA  231 (265)
T ss_pred             HHhcCCeEeecCCCChHHHHHHHHh--CCCCEEEeCC--CCCCChHHHHHHHHHHHHccC
Confidence            8899999999999888888888754  2389999853  355556778888887777776

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=82.98  E-value=2.1  Score=41.22  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=29.9

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCC-----------eEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGA-----------RVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~-----------~i~v~nR~  400 (409)
                      .+++..+++++|||.+|-+++.-|.+.++           +|++++|.
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~   68 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK   68 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCC
Confidence            46778899999999999999988876554           58887764

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder

Probab=82.94  E-value=0.84  Score=42.55  Aligned_cols=111  Identities=16%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             EEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccC---------ccchHHHH---H-hccCCCcEEEEeccCC
Q 015310           67 VLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKV---------ASNILGKQ---Y-SSHQSGTRFIVSCNLD  133 (409)
Q Consensus        67 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~---------~~~~~~~l---~-~~~~~~~kiI~S~H~f  133 (409)
                      +.+|-|+...||.+.. +++..+-....++.|++||||=...         .++-++++   + ..++....+.+|.=  
T Consensus         2 lNvt~dSf~~g~~~~~-~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSID--   78 (210)
T PF00809_consen    2 LNVTPDSFSDGGRKFS-EDEAVKRAREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSID--   78 (210)
T ss_dssp             EEESCCTTTTTTCHHH-HHHHHHHHHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred             EEecCCCCcccCcccC-HHHHHHHHHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEE--
Confidence            4567778888887533 3444444667778999999996443         11222222   2 22211345677753  


Q ss_pred             CCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcC
Q 015310          134 CETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG  189 (409)
Q Consensus       134 ~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG  189 (409)
                        |+..+.+..-+    +.|++++==...-..   .-.++.+..+.+.|+|+|.|.
T Consensus        79 --T~~~~v~~~aL----~~g~~~ind~~~~~~---~~~~~~l~a~~~~~vV~m~~~  125 (210)
T PF00809_consen   79 --TFNPEVAEAAL----KAGADIINDISGFED---DPEMLPLAAEYGAPVVLMHSD  125 (210)
T ss_dssp             --ESSHHHHHHHH----HHTSSEEEETTTTSS---STTHHHHHHHHTSEEEEESES
T ss_pred             --CCCHHHHHHHH----HcCcceEEecccccc---cchhhhhhhcCCCEEEEEecc
Confidence              44455554444    448886543333332   444566666678899999998

It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=82.88  E-value=8.1  Score=39.20  Aligned_cols=89  Identities=18%  Similarity=0.099  Sum_probs=54.2

Q ss_pred             eccCCHHHH----HHHHHHHHhcCCCEEEEEecC-------CCCC----CC-------------hhHHHHHHhcCCCcEE
Q 015310           17 LMAQSVEQV----LSNMYQAKAEGADVVEIRLDC-------INNF----QP-------------GKDLEIILTKKPLPVL   68 (409)
Q Consensus        17 l~~~~~~e~----~~~~~~~~~~~aD~vElRlD~-------l~~~----~~-------------~~~l~~l~~~~~~PiI   68 (409)
                      ++..+++++    ...++++.+.|.|.||+--=.       |...    ++             .+.+..+++..+...+
T Consensus       139 mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~  218 (363)
T COG1902         139 LTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFP  218 (363)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCce
Confidence            444444443    444666778999999997643       1211    11             1334445554555556


Q ss_pred             EEeccC-CCCCC-CCCCHHHHHHHHHHHHHcC-CcEEEEe
Q 015310           69 IVYRPK-WAGGL-YEGDEHKRLEALHLAEDLG-ADYVDFE  105 (409)
Q Consensus        69 ~T~R~~-~eGG~-~~~~~~~~~~ll~~~~~~g-~dyvDiE  105 (409)
                      +.+|-. .|-+. ...+.++..++.+.+.+.| +|||++=
T Consensus       219 vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs  258 (363)
T COG1902         219 VGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVS  258 (363)
T ss_pred             EEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEee
Confidence            777833 22211 1236688999999999999 8999974

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=82.78  E-value=2.4  Score=42.90  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=31.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      .|++++|.|+|+.|.+++..+..+|++|+++.++.++
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~  214 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEK  214 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence            4789999999999999999999999988777766443

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=82.75  E-value=3.4  Score=34.05  Aligned_cols=39  Identities=23%  Similarity=0.205  Sum_probs=32.2

Q ss_pred             EEEEEechhHHHHHHHHHHhCC--Ce-EEEEeCChHHHHhhh
Q 015310          370 MFVLAGAGGAGRALAFGAKSRG--AR-VVIFDIDFEQSLLLL  408 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~G--~~-i~v~nR~~~ka~~la  408 (409)
                      ++.|+|+|..++.-..++.+..  .+ +.|++++.++++..+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~   43 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFA   43 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHH
Confidence            5899999999999988888873  45 569999999988753

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=82.71  E-value=20  Score=34.68  Aligned_cols=119  Identities=13%  Similarity=0.145  Sum_probs=64.9

Q ss_pred             eccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHH----HHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           17 LMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDL----EIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        17 l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l----~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      |...+.+.++..+++..+.|||++.+=...-.. +..+.+    ..+....+.|+.+=              ..+.+.++
T Consensus        19 ~~~~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~-eE~~r~~~~v~~l~~~~~~plsID--------------T~~~~v~e   83 (261)
T PRK07535         19 IEAKDAAFIQKLALKQAEAGADYLDVNAGTAVE-EEPETMEWLVETVQEVVDVPLCID--------------SPNPAAIE   83 (261)
T ss_pred             HHcCCHHHHHHHHHHHHHCCCCEEEECCCCCch-hHHHHHHHHHHHHHHhCCCCEEEe--------------CCCHHHHH
Confidence            456788888888888889999999888773221 111122    22323346775432              13345677


Q ss_pred             HHHHc--CCcE-EEEeccC--ccchHHHHHhccCCCcEEEEeccCCCCCCCH-----hHHHHHHHHHHHcC
Q 015310           93 LAEDL--GADY-VDFELKV--ASNILGKQYSSHQSGTRFIVSCNLDCETPSE-----EDLGYLVSRMQATG  153 (409)
Q Consensus        93 ~~~~~--g~dy-vDiEl~~--~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~-----~~l~~~~~~~~~~g  153 (409)
                      ++++.  |+++ =||-...  .++.++ +  +++.+..+|+-+.+-.++|..     +.+.++++.+.+.|
T Consensus        84 aaL~~~~G~~iINsIs~~~~~~~~~~~-l--~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~G  151 (261)
T PRK07535         84 AGLKVAKGPPLINSVSAEGEKLEVVLP-L--VKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYG  151 (261)
T ss_pred             HHHHhCCCCCEEEeCCCCCccCHHHHH-H--HHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            78877  7554 3554432  222222 2  234566776654433566632     22344444455555

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=82.66  E-value=11  Score=36.34  Aligned_cols=104  Identities=19%  Similarity=0.229  Sum_probs=59.2

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE--eccCcc-------chHHH---HHhccCCCcEEEEeccCCCCCCCHh
Q 015310           73 PKWAGGLYEGDEHKRLEALHLAEDLGADYVDF--ELKVAS-------NILGK---QYSSHQSGTRFIVSCNLDCETPSEE  140 (409)
Q Consensus        73 ~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDi--El~~~~-------~~~~~---l~~~~~~~~kiI~S~H~f~~tp~~~  140 (409)
                      +-.+||.+ .+.++-++.-+..++.|+++|||  |-..+.       +-+++   ++..-+...++.+|.=    |+..+
T Consensus        13 SF~dg~~~-~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSID----T~~~~   87 (257)
T cd00739          13 SFSDGGRF-LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVD----TFRAE   87 (257)
T ss_pred             CCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEe----CCCHH
Confidence            44678876 45555556666667899999999  433221       11122   2221123335667753    44444


Q ss_pred             HHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEc
Q 015310          141 DLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSV  188 (409)
Q Consensus       141 ~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~M  188 (409)
                      .+.    .+.+.|+|++==+..-+.  | .+++.+..+.+.++|.|.+
T Consensus        88 v~e----~al~~G~~iINdisg~~~--~-~~~~~l~~~~~~~vV~m~~  128 (257)
T cd00739          88 VAR----AALEAGADIINDVSGGSD--D-PAMLEVAAEYGAPLVLMHM  128 (257)
T ss_pred             HHH----HHHHhCCCEEEeCCCCCC--C-hHHHHHHHHcCCCEEEECC
Confidence            444    444458888653333221  1 4556666777889999877

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>PRK08227 autoinducer 2 aldolase; Validated

Probab=82.50  E-value=24  Score=34.16  Aligned_cols=120  Identities=14%  Similarity=0.143  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHH---H---hcCCCcEEEEeccCCCCCCCCCCHHHHHHH-HHHHH
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII---L---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEA-LHLAE   95 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l---~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l-l~~~~   95 (409)
                      ..+...+++++..|||+|=.-+-.-.+.+ .+.+..+   .   +...+|+|. +-  ..|+.... +.+++.. -+.+.
T Consensus        94 ~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E-~~~l~~l~~v~~ea~~~G~Plla-~~--prG~~~~~-~~~~ia~aaRiaa  168 (264)
T PRK08227         94 EAVAVDMEDAVRLNACAVAAQVFIGSEYE-HQSIKNIIQLVDAGLRYGMPVMA-VT--AVGKDMVR-DARYFSLATRIAA  168 (264)
T ss_pred             ccceecHHHHHHCCCCEEEEEEecCCHHH-HHHHHHHHHHHHHHHHhCCcEEE-Ee--cCCCCcCc-hHHHHHHHHHHHH
Confidence            44555677888899999988886554332 2344333   3   235899998 33  34555432 3334443 34667


Q ss_pred             HcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCC
Q 015310           96 DLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGA  154 (409)
Q Consensus        96 ~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~ga  154 (409)
                      ++|+|.|=+.+..  +.+++++.  ...+.|+++==  .++ +.+++.+.+++..+.||
T Consensus       169 ELGADiVK~~y~~--~~f~~vv~--a~~vPVviaGG--~k~-~~~~~L~~v~~ai~aGa  220 (264)
T PRK08227        169 EMGAQIIKTYYVE--EGFERITA--GCPVPIVIAGG--KKL-PERDALEMCYQAIDEGA  220 (264)
T ss_pred             HHcCCEEecCCCH--HHHHHHHH--cCCCcEEEeCC--CCC-CHHHHHHHHHHHHHcCC
Confidence            8999999988864  45666664  35678887742  234 45677888887777886

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=82.44  E-value=2.3  Score=45.68  Aligned_cols=37  Identities=19%  Similarity=0.118  Sum_probs=31.5

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhC----CCeEEEEeCCh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSR----GARVVIFDIDF  401 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~----G~~i~v~nR~~  401 (409)
                      +.++++|+|||+|=+|.|+|+.|.+.    |.+|+|+.+..
T Consensus        19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~   59 (576)
T PRK13977         19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELD   59 (576)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCC
Confidence            34568999999999999999999986    45899998764

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=82.27  E-value=49  Score=33.18  Aligned_cols=148  Identities=14%  Similarity=0.192  Sum_probs=86.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .|.+.-++|+++..+.|||+|=+=+.-.   +..+.+..+++..++|++.-+-       |+     | .+-..+++.|+
T Consensus        31 ~Dv~atv~QI~~L~~aGceiVRvavp~~---~~A~al~~I~~~~~iPlVADIH-------Fd-----~-~lAl~a~~~g~   94 (346)
T TIGR00612        31 IDIDSTVAQIRALEEAGCDIVRVTVPDR---ESAAAFEAIKEGTNVPLVADIH-------FD-----Y-RLAALAMAKGV   94 (346)
T ss_pred             hhHHHHHHHHHHHHHcCCCEEEEcCCCH---HHHHhHHHHHhCCCCCEEEeeC-------CC-----c-HHHHHHHHhcc
Confidence            3556678888888899999995544322   2345677888888999996542       11     1 12234445566


Q ss_pred             cEEEEeccCc--cchHHHHH-hccCCCcEE-EEeccC---------C-CCCCC--HhHHHHHHHHHHHcCCCEEEEEeec
Q 015310          100 DYVDFELKVA--SNILGKQY-SSHQSGTRF-IVSCNL---------D-CETPS--EEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus       100 dyvDiEl~~~--~~~~~~l~-~~~~~~~ki-I~S~H~---------f-~~tp~--~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      |-|-|-=-..  ++.++.++ .++..++.+ |+-.|=         + ..||.  .+...+.++-+.++|-+=+|+-..+
T Consensus        95 dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~Ks  174 (346)
T TIGR00612        95 AKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKA  174 (346)
T ss_pred             CeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc
Confidence            6655532221  23344444 334444433 333321         1 12442  1334566777888888888898988


Q ss_pred             CCHhHHHHHHHHhcc-CCCCE
Q 015310          164 NDITEIARIFQLLSH-CQVPI  183 (409)
Q Consensus       164 ~~~~D~~~ll~~~~~-~~~p~  183 (409)
                      .+..+..+..+++.+ ++.|+
T Consensus       175 Sdv~~~i~ayr~la~~~dyPL  195 (346)
T TIGR00612       175 SDVAETVAAYRLLAERSDYPL  195 (346)
T ss_pred             CCHHHHHHHHHHHHhhCCCCc
Confidence            888877666665543 36564

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=82.24  E-value=1.7  Score=45.44  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      .+++||||.|-+|-.++..|++.|++++++-+.+.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps  158 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS  158 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence            47899999999999999999999999999877643

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=82.21  E-value=44  Score=31.30  Aligned_cols=150  Identities=19%  Similarity=0.205  Sum_probs=79.6

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC----CChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 015310           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNF----QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLA   94 (409)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~   94 (409)
                      ..++.++.+   .+.+.|+|.+-+| |+=...    .....++++.+....|+++      .||-.+.  +    -.+.+
T Consensus        31 ~~~~~e~a~---~~~~~G~~~l~i~-dl~~~~~~~~~~~~~i~~i~~~~~~~l~v------~GGi~~~--~----~~~~~   94 (241)
T PRK13585         31 YGDPVEVAK---RWVDAGAETLHLV-DLDGAFEGERKNAEAIEKIIEAVGVPVQL------GGGIRSA--E----DAASL   94 (241)
T ss_pred             CCCHHHHHH---HHHHcCCCEEEEE-echhhhcCCcccHHHHHHHHHHcCCcEEE------cCCcCCH--H----HHHHH
Confidence            345656554   4456899999888 553211    2234566666667889987      3554322  1    22445


Q ss_pred             HHcCCcEEEEeccCc--cchHHHHHhccCCCcEEEEec--c-------CCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310           95 EDLGADYVDFELKVA--SNILGKQYSSHQSGTRFIVSC--N-------LDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus        95 ~~~g~dyvDiEl~~~--~~~~~~l~~~~~~~~kiI~S~--H-------~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      ++.|++.|.+--...  .+.+.++... -+..++++|.  +       .+.... ..+..+..+++.+.|++-+=+.-..
T Consensus        95 ~~~Ga~~v~iGs~~~~~~~~~~~i~~~-~g~~~i~~sid~~~~~v~~~g~~~~~-~~~~~~~~~~~~~~G~~~i~~~~~~  172 (241)
T PRK13585         95 LDLGVDRVILGTAAVENPEIVRELSEE-FGSERVMVSLDAKDGEVVIKGWTEKT-GYTPVEAAKRFEELGAGSILFTNVD  172 (241)
T ss_pred             HHcCCCEEEEChHHhhChHHHHHHHHH-hCCCcEEEEEEeeCCEEEECCCcccC-CCCHHHHHHHHHHcCCCEEEEEeec
Confidence            568999988754333  2344455422 1234565543  2       111111 1245667777788899866433221


Q ss_pred             C----CHhHHHHHHHHhccCCCCEEEE
Q 015310          164 N----DITEIARIFQLLSHCQVPIIAY  186 (409)
Q Consensus       164 ~----~~~D~~~ll~~~~~~~~p~i~~  186 (409)
                      .    ...|...+-++....+.|+++-
T Consensus       173 ~~g~~~g~~~~~i~~i~~~~~iPvia~  199 (241)
T PRK13585        173 VEGLLEGVNTEPVKELVDSVDIPVIAS  199 (241)
T ss_pred             CCCCcCCCCHHHHHHHHHhCCCCEEEe
Confidence            1    1123333344444457787664

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=82.17  E-value=2.8  Score=41.17  Aligned_cols=40  Identities=43%  Similarity=0.592  Sum_probs=34.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|.++||.|+|++|.+++.-+..+|++++++.++.++.+.
T Consensus       159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~  198 (337)
T cd08261         159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEF  198 (337)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHH
Confidence            4679999999999999999889999998888888777654

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PLN02661 Putative thiazole synthesis

Probab=82.14  E-value=1.8  Score=43.70  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=29.4

Q ss_pred             CEEEEEechhHHHHHHHHHHhC-CCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~-G~~i~v~nR~~  401 (409)
                      ..++|+|+|.+|-.+++.|++. |.+|.|+.|+.
T Consensus        93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~  126 (357)
T PLN02661         93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSV  126 (357)
T ss_pred             CCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            4699999999999999999976 67999999864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=82.13  E-value=1.6  Score=47.69  Aligned_cols=31  Identities=32%  Similarity=0.382  Sum_probs=28.1

Q ss_pred             EEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          370 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .|||||+|+||.++|..+++.|++|.|+...
T Consensus        52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~   82 (635)
T PLN00128         52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL   82 (635)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence            5999999999999999999999999888754

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=82.04  E-value=55  Score=32.23  Aligned_cols=119  Identities=17%  Similarity=0.159  Sum_probs=76.8

Q ss_pred             HHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCc---------------cchHHHHH---h
Q 015310           57 EIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVA---------------SNILGKQY---S  118 (409)
Q Consensus        57 ~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~---------------~~~~~~l~---~  118 (409)
                      .++.+..++|+|+=.    |.|..  +...-.+..+...+.|+.-|-||-...               ++...+|.   .
T Consensus        71 ~~I~~~~~iPviaD~----d~GyG--~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~  144 (292)
T PRK11320         71 RRITDACDLPLLVDI----DTGFG--GAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVD  144 (292)
T ss_pred             HHHHhccCCCEEEEC----CCCCC--CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHH
Confidence            344455699999875    56653  555556788899999999999997541               12334443   2


Q ss_pred             ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEE
Q 015310          119 SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIA  185 (409)
Q Consensus       119 ~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~  185 (409)
                      ++...-=+|+-.-|--.....+|.+++.+...+.|||++=+-. +++.++..++.+.   .+.|+.+
T Consensus       145 a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~-~~~~~~i~~~~~~---~~~Pl~~  207 (292)
T PRK11320        145 ARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEA-MTELEMYRRFADA---VKVPILA  207 (292)
T ss_pred             hccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHHHHHHh---cCCCEEE
Confidence            3222223454554422344578888888889999999987753 6777777666554   3567543

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=82.02  E-value=2.6  Score=40.57  Aligned_cols=37  Identities=30%  Similarity=0.396  Sum_probs=27.7

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhC----CC-------eEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSR----GA-------RVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~----G~-------~i~v~nR~  400 (409)
                      .+++..+++++|||-+|-+++.-|.+.    |.       +|++++|.
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~   68 (255)
T PF03949_consen   21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK   68 (255)
T ss_dssp             S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred             CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence            567788999999999988888777665    86       49999875

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=81.98  E-value=2.7  Score=40.44  Aligned_cols=39  Identities=31%  Similarity=0.328  Sum_probs=34.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChHHHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~ka~  405 (409)
                      ++.+++|.|+|+.|.+++..+...|++ |+++.++.++.+
T Consensus       129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~  168 (312)
T cd08269         129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLA  168 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            478899999999999999989999996 999999877654

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=81.86  E-value=34  Score=33.84  Aligned_cols=154  Identities=11%  Similarity=0.072  Sum_probs=93.9

Q ss_pred             CCCCHHHHHhhhhhc-------------cccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc------ccH
Q 015310          218 GLPTVESLRQTYKVE-------------HINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV------DDL  278 (409)
Q Consensus       218 GQ~~~~~l~~~~~~~-------------~i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~------~~l  278 (409)
                      -|++-+++..+++.-             .....+...-+|=.|-.  |+-.=+..+.++||....|.....      |.+
T Consensus        11 ~dls~~~l~~ll~~A~~~k~~~~~~~~~~~L~gk~v~~lF~e~ST--RTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl   88 (304)
T PRK00779         11 DDLSPEELEELLDLAAELKKKRKAGEPHPPLKGKTLAMIFEKPST--RTRVSFEVGMAQLGGHAIFLSPRDTQLGRGEPI   88 (304)
T ss_pred             hhCCHHHHHHHHHHHHHHHhHhhcCCccccCCCCEEEEEecCCCc--hHHHHHHHHHHHcCCcEEEECcccccCCCCcCH
Confidence            356777777766631             11112233445556544  556667899999999888875332      467


Q ss_pred             HHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCC
Q 015310          279 KKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG  358 (409)
Q Consensus       279 ~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~  358 (409)
                      .+.+..+... ++++-+=-|....+-.+       |+..+  --|++-  .+ -..+=|-...=+.+|++.+        
T Consensus        89 ~Dt~~~l~~~-~D~iv~R~~~~~~~~~~-------a~~~~--vPVINa--g~-~~~HPtQaL~Dl~Ti~e~~--------  147 (304)
T PRK00779         89 EDTARVLSRY-VDAIMIRTFEHETLEEL-------AEYST--VPVING--LT-DLSHPCQILADLLTIYEHR--------  147 (304)
T ss_pred             HHHHHHHHHh-CCEEEEcCCChhHHHHH-------HHhCC--CCEEeC--CC-CCCChHHHHHHHHHHHHHh--------
Confidence            7777766544 66666555544333222       22221  124433  22 2355555544455555433        


Q ss_pred             CCCCCCCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeC
Q 015310          359 TASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       359 ~~~~~~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR  399 (409)
                           ..++|.+++++|- +.++++.+..|..+|++|+++.-
T Consensus       148 -----g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P  184 (304)
T PRK00779        148 -----GSLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATP  184 (304)
T ss_pred             -----CCcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECC
Confidence                 2478899999997 67999999999999999888763

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=81.71  E-value=48  Score=31.41  Aligned_cols=151  Identities=20%  Similarity=0.239  Sum_probs=90.9

Q ss_pred             HHHHHhcCCCEEEEEecCCC-CCCCh-hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH---HHHHHHcCCcEEE
Q 015310           29 MYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA---LHLAEDLGADYVD  103 (409)
Q Consensus        29 ~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l---l~~~~~~g~dyvD  103 (409)
                      +..+...|||-||+.--+-. ...|+ -.++..++..++|+-.-+|+  .||-|-.++.++.-.   ++.+-++|++-|=
T Consensus        14 l~~A~~~GAdRiELC~~La~GG~TPSyG~~k~a~~~~~ipv~~MIRP--RgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV   91 (241)
T COG3142          14 LLAAQAAGADRIELCDALAEGGLTPSYGVIKEAVELSKIPVYVMIRP--RGGDFVYSDDELEIMLEDIRLARELGVQGVV   91 (241)
T ss_pred             HHHHHHcCCceeehhhccccCCCCCCHHHHHHHHhhcCCceEEEEec--CCCCcccChHHHHHHHHHHHHHHHcCCCcEE
Confidence            34556789999999865543 22332 24555666689999999997  478776776554333   3456677776554


Q ss_pred             Eec-----cCccchHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHhHHHH-HHH
Q 015310          104 FEL-----KVASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DITEIAR-IFQ  174 (409)
Q Consensus       104 iEl-----~~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~~D~~~-ll~  174 (409)
                      +=.     +.+.+.+++|+.+ .+  .+=+.||- |+.+|+   ..+.+++..++|  +.+|-+.-.  +..|.+. |.+
T Consensus        92 ~G~lt~dg~iD~~~le~Li~a-A~--gL~vTFHrAFD~~~d---~~~ale~li~~G--v~RILTsGg~~sa~eg~~~l~~  163 (241)
T COG3142          92 LGALTADGNIDMPRLEKLIEA-AG--GLGVTFHRAFDECPD---PLEALEQLIELG--VERILTSGGKASALEGLDLLKR  163 (241)
T ss_pred             EeeecCCCccCHHHHHHHHHH-cc--CCceeeehhhhhcCC---HHHHHHHHHHCC--CcEEecCCCcCchhhhHHHHHH
Confidence            432     2233456666643 23  35567887 999997   445566666766  677776654  3444433 334


Q ss_pred             HhccC-CCCEEEEEcC
Q 015310          175 LLSHC-QVPIIAYSVG  189 (409)
Q Consensus       175 ~~~~~-~~p~i~~~MG  189 (409)
                      +..++ +.+.|..+-|
T Consensus       164 li~~a~gri~Im~GaG  179 (241)
T COG3142         164 LIEQAKGRIIIMAGAG  179 (241)
T ss_pred             HHHHhcCCEEEEeCCC
Confidence            44444 4455544443

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=81.71  E-value=41  Score=32.38  Aligned_cols=103  Identities=15%  Similarity=0.162  Sum_probs=61.9

Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeccCcc----------chHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHH
Q 015310           82 GDEHKRLEALHLAEDLGADYVDFELKVAS----------NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQA  151 (409)
Q Consensus        82 ~~~~~~~~ll~~~~~~g~dyvDiEl~~~~----------~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~  151 (409)
                      .+.+...++++..++.|++.|-+=-...+          ++++.....-.+.+.+|++-    ++++.++..++.+.+++
T Consensus        15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv----~~~~~~~~i~~a~~a~~   90 (281)
T cd00408          15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGV----GANSTREAIELARHAEE   90 (281)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEec----CCccHHHHHHHHHHHHH
Confidence            45555566666666666666554221111          11122222223567778775    34567889999999999


Q ss_pred             cCCCEEEEEee---cCCHhHHHHHHHHhcc-CCCCEEEEEc
Q 015310          152 TGADIIKLVFS---VNDITEIARIFQLLSH-CQVPIIAYSV  188 (409)
Q Consensus       152 ~gaDivKia~~---~~~~~D~~~ll~~~~~-~~~p~i~~~M  188 (409)
                      .|+|.+=+...   +.+.+++.+-++...+ .+.|++.++.
T Consensus        91 ~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~  131 (281)
T cd00408          91 AGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNI  131 (281)
T ss_pred             cCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            99998776543   2245666665555433 4789988776

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PLN02697 lycopene epsilon cyclase

Probab=81.70  E-value=1.6  Score=46.44  Aligned_cols=32  Identities=34%  Similarity=0.378  Sum_probs=29.0

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..|+|+|+|.+|.+++.+|++.|.+|.++.+.
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~  140 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPD  140 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence            36999999999999999999999999998764

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=81.67  E-value=24  Score=32.75  Aligned_cols=119  Identities=14%  Similarity=0.194  Sum_probs=69.4

Q ss_pred             EEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      +...|...+.++...-++.+.+.|..++|+.++-   ....+.++.+++..+- +++-.=|.       .+.+    -.+
T Consensus         6 vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~t---p~a~~~I~~l~~~~~~-~~vGAGTV-------l~~e----~a~   70 (201)
T PRK06015          6 VIPVLLIDDVEHAVPLARALAAGGLPAIEITLRT---PAALDAIRAVAAEVEE-AIVGAGTI-------LNAK----QFE   70 (201)
T ss_pred             EEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC---ccHHHHHHHHHHHCCC-CEEeeEeC-------cCHH----HHH
Confidence            4456788899999999999999999999999861   1223456666544432 44322111       1222    345


Q ss_pred             HHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe
Q 015310           93 LAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF  161 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~  161 (409)
                      .+++.|++|+==-     .+..+++ ..++.+.-+|=-    --||+  |    +.++.++|+|++|+--
T Consensus        71 ~ai~aGA~FivSP-----~~~~~vi~~a~~~~i~~iPG----~~Tpt--E----i~~A~~~Ga~~vK~FP  125 (201)
T PRK06015         71 DAAKAGSRFIVSP-----GTTQELLAAANDSDVPLLPG----AATPS--E----VMALREEGYTVLKFFP  125 (201)
T ss_pred             HHHHcCCCEEECC-----CCCHHHHHHHHHcCCCEeCC----CCCHH--H----HHHHHHCCCCEEEECC
Confidence            6778888886311     1222333 233344433322    23554  2    4456678999999753

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=81.59  E-value=2.6  Score=44.84  Aligned_cols=41  Identities=24%  Similarity=0.444  Sum_probs=36.3

Q ss_pred             CCCCEEEEEechh-HHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          366 LAGRMFVLAGAGG-AGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       366 ~~~~~vlvlGaGG-aarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      +.||+++|-|+|| .|+.++..+.+.+. +|.+++|++-+...
T Consensus       248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~  290 (588)
T COG1086         248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYL  290 (588)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHH
Confidence            5799999999999 89999999999998 89999999766543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=81.52  E-value=2.3  Score=46.23  Aligned_cols=41  Identities=22%  Similarity=0.265  Sum_probs=37.6

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .++++|+|.|-.|+.++..|.+.|.++++++.|+++.+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~  440 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLR  440 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHH
Confidence            36899999999999999999999999999999999988764

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=81.49  E-value=24  Score=34.23  Aligned_cols=123  Identities=16%  Similarity=0.116  Sum_probs=66.9

Q ss_pred             HHHHhcCCCc-EEEEeccCCCCCCCCCCHHHHHHHHHHHHH-cCCcEEEEeccCccchHHHHHhccCCCcEEEE------
Q 015310           57 EIILTKKPLP-VLIVYRPKWAGGLYEGDEHKRLEALHLAED-LGADYVDFELKVASNILGKQYSSHQSGTRFIV------  128 (409)
Q Consensus        57 ~~l~~~~~~P-iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~------  128 (409)
                      +.+.+..+.| ++.-.   .- |.+..+.++-.+--.+.++ .|++.|=||=..  +..+.+..+...++.|+.      
T Consensus        68 ~~V~r~~~~p~vvaD~---pf-g~y~~~~~~av~~a~r~~~~aGa~aVkiEdg~--~~~~~I~al~~agIpV~gHiGL~p  141 (264)
T PRK00311         68 KAVARGAPRALVVADM---PF-GSYQASPEQALRNAGRLMKEAGAHAVKLEGGE--EVAETIKRLVERGIPVMGHLGLTP  141 (264)
T ss_pred             HHHHhcCCCCcEEEeC---CC-CCccCCHHHHHHHHHHHHHHhCCeEEEEcCcH--HHHHHHHHHHHCCCCEeeeecccc
Confidence            3444556776 44323   11 4455566554444344444 899999999752  222223323334555541      


Q ss_pred             -eccCC------CCCCC-HhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCc
Q 015310          129 -SCNLD------CETPS-EEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE  190 (409)
Q Consensus       129 -S~H~f------~~tp~-~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~  190 (409)
                       |.|.+      -+|.. .+++++....+++.|||.+=+=..|.  +..   -+++...+.|+|+|+-|+
T Consensus       142 q~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~--~~~---~~i~~~l~iP~igiGaG~  206 (264)
T PRK00311        142 QSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVPA--ELA---KEITEALSIPTIGIGAGP  206 (264)
T ss_pred             eeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH--HHH---HHHHHhCCCCEEEeccCC
Confidence             11111      12322 34677777778899999886654433  222   233344578999988776

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=81.42  E-value=34  Score=32.11  Aligned_cols=58  Identities=19%  Similarity=0.332  Sum_probs=40.4

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CC-----hhHHHHHHhc-CCCcEEEEe
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QP-----GKDLEIILTK-KPLPVLIVY   71 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~~-----~~~l~~l~~~-~~~PiI~T~   71 (409)
                      +|+.+|..-+...+.++++++.+.|+|.+  -+|.++.. -|     .+.++.+++. ++.|+=+++
T Consensus         1 ~i~pSil~ad~~~l~~~i~~l~~~g~~~l--H~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHL   65 (220)
T PRK08883          1 LIAPSILSADFARLGEDVEKVLAAGADVV--HFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHL   65 (220)
T ss_pred             CcchhhhhcCHHHHHHHHHHHHHcCCCEE--EEecccCcccCccccCHHHHHHHHHhCCCCCEEEEe
Confidence            36678888899999999999888888886  56776632 11     2456677665 466755554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=81.41  E-value=1.9  Score=43.82  Aligned_cols=34  Identities=32%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             CCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++.|+| .|.+|++++.+|.+.|..|++++|+.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            47899999 89999999999999999999999864

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=81.11  E-value=1.8  Score=47.23  Aligned_cols=31  Identities=26%  Similarity=0.259  Sum_probs=27.8

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeC
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR  399 (409)
                      ..|||||+|+||.+++..+++.|++|.|+..
T Consensus        36 ~DVlVVG~G~AGl~AAi~Aae~G~~VilieK   66 (640)
T PRK07573         36 FDVIVVGTGLAGASAAATLGELGYNVKVFCY   66 (640)
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence            3699999999999999999999999888853

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=81.05  E-value=16  Score=36.45  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=31.9

Q ss_pred             hcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCcc
Q 015310           61 TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVAS  110 (409)
Q Consensus        61 ~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~  110 (409)
                      +..+.|+|+.++.        .+.+++.++.+.+.+.|+|+|++-+.++.
T Consensus        98 ~~~~~pvi~sI~g--------~~~~e~~~~a~~~~~agad~ielN~scpp  139 (334)
T PRK07565         98 EAVDIPVIASLNG--------SSAGGWVDYARQIEQAGADALELNIYYLP  139 (334)
T ss_pred             HhcCCcEEEEecc--------CCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            4457899999953        24567788888888889999999887643

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=81.02  E-value=2.2  Score=44.32  Aligned_cols=35  Identities=29%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..|++++|+|+|-+|--++..|.++|++|+++.|.
T Consensus       270 ~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~  304 (449)
T TIGR01316       270 YAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRR  304 (449)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence            35789999999999999999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=81.00  E-value=3.3  Score=40.05  Aligned_cols=40  Identities=28%  Similarity=0.243  Sum_probs=34.2

Q ss_pred             CCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       368 ~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +.+++|.|+ |+.+.+++..+...|++|+++.++.++.+.+
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~  187 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYL  187 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            458999998 9999999998899999999999988776543

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=80.95  E-value=3.4  Score=39.63  Aligned_cols=41  Identities=24%  Similarity=0.217  Sum_probs=35.0

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ++++++|.|+ |+.+++++..+...|++++++.++.++.+.+
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~  185 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL  185 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            4678999997 9999999999999999988888887776544

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=80.92  E-value=1.9  Score=46.89  Aligned_cols=32  Identities=28%  Similarity=0.527  Sum_probs=29.9

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      -.|+|||+|-+|.++++.|+..|.+|.|+.|.
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~  103 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGLRVGLVERE  103 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            35999999999999999999999999999886

>PRK12831 putative oxidoreductase; Provisional

Probab=80.91  E-value=2.2  Score=44.63  Aligned_cols=35  Identities=26%  Similarity=0.239  Sum_probs=31.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..+++|+|+|+|-+|--+|..|.++|++|+++.|.
T Consensus       279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~  313 (464)
T PRK12831        279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR  313 (464)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence            35799999999999999999999999999999874

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=80.65  E-value=2.4  Score=43.10  Aligned_cols=34  Identities=32%  Similarity=0.531  Sum_probs=30.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .+++++|+|+|-+|--++..|.+.|.+|+|+.|.
T Consensus       143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  176 (396)
T PRK09754        143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELA  176 (396)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            3678999999999999999999999999998874

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=80.57  E-value=1.8  Score=46.13  Aligned_cols=38  Identities=18%  Similarity=0.353  Sum_probs=32.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..++||+|||+|+|-+|-=|+..|.....+|++.-|+.
T Consensus       179 ~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~  216 (531)
T PF00743_consen  179 EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG  216 (531)
T ss_dssp             GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred             hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence            45789999999999999999999998866999988863

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PLN02858 fructose-bisphosphate aldolase

Probab=80.38  E-value=2.7  Score=49.82  Aligned_cols=40  Identities=15%  Similarity=0.110  Sum_probs=37.2

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      +++-+||.|-+|.+++..|...|.+|+++||+.++++.++
T Consensus       325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~  364 (1378)
T PLN02858        325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFE  364 (1378)
T ss_pred             CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            6899999999999999999999999999999999987764

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=80.37  E-value=3.7  Score=39.66  Aligned_cols=41  Identities=29%  Similarity=0.261  Sum_probs=34.8

Q ss_pred             CCCEEEEEech-hHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+++++|.|++ +.+++++..+...|++|+++.++.++.+.+
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~  207 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERA  207 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            46799999986 799999999999999999999988776543

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=80.36  E-value=53  Score=30.97  Aligned_cols=59  Identities=15%  Similarity=0.243  Sum_probs=43.0

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-CC-----hhHHHHHHhc-CCCcEEEEec
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNF-QP-----GKDLEIILTK-KPLPVLIVYR   72 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~~-----~~~l~~l~~~-~~~PiI~T~R   72 (409)
                      +|+.+|..-+...+.++++++.+.|+|.+  -+|.++.. -|     .+.++.+++. ++.|+=+++=
T Consensus         5 ~i~pSil~ad~~~l~~~i~~l~~~g~d~l--HiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLM   70 (223)
T PRK08745          5 AIAPSILSADFARLGEEVDNVLKAGADWV--HFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLM   70 (223)
T ss_pred             EEEeehhhcCHHHHHHHHHHHHHcCCCEE--EEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEec
Confidence            68999999999999999999888889986  56776632 11     2456677665 4777655553

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=80.29  E-value=2.3  Score=44.30  Aligned_cols=40  Identities=15%  Similarity=0.043  Sum_probs=35.6

Q ss_pred             CEEEEEec-hhHHHHHHHHHHhC-------CC--eEEEEeCChHHHHhhh
Q 015310          369 RMFVLAGA-GGAGRALAFGAKSR-------GA--RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       369 ~~vlvlGa-GGaarai~~aL~~~-------G~--~i~v~nR~~~ka~~la  408 (409)
                      -+|.|+|+ |-+|-+++|.|...       |.  +|.+++++.++++..+
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~a  150 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVA  150 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHH
Confidence            47999999 99999999999988       75  7999999999988765

>PLN02253 xanthoxin dehydrogenase

Probab=80.19  E-value=2.4  Score=40.45  Aligned_cols=39  Identities=26%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +-++.=|+||.|++++..|.+.|++|++++|+.++.+++
T Consensus        20 ~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~   58 (280)
T PLN02253         20 VALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNV   58 (280)
T ss_pred             EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            457788999999999999999999999999987766544

>PTZ00058 glutathione reductase; Provisional

Probab=80.19  E-value=2.1  Score=45.93  Aligned_cols=31  Identities=29%  Similarity=0.429  Sum_probs=29.0

Q ss_pred             EEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          370 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++|||+|.+|.++|..++++|.+|.|+.+.
T Consensus        50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~   80 (561)
T PTZ00058         50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD   80 (561)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence            5999999999999999999999999999875

>PLN02702 L-idonate 5-dehydrogenase

Probab=80.15  E-value=3.5  Score=41.09  Aligned_cols=39  Identities=33%  Similarity=0.467  Sum_probs=33.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~  405 (409)
                      .+.+++|+|+|+.+.+++..+...|+ .|++++++.++.+
T Consensus       181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~  220 (364)
T PLN02702        181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLS  220 (364)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            47899999999999999999999999 6888888766654

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=80.15  E-value=3.6  Score=41.18  Aligned_cols=40  Identities=30%  Similarity=0.549  Sum_probs=34.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+++|.|+|++|.+++..+...|+ .|+++.++.++.+.
T Consensus       183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~  223 (365)
T cd05279         183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEK  223 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence            47899999999999999988899999 58888888777554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=80.03  E-value=3.5  Score=39.89  Aligned_cols=41  Identities=24%  Similarity=0.308  Sum_probs=34.2

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|.+++|.|+ |+.|.+++..+..+|++++++.++.++.+.+
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~  180 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAEL  180 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence            4678999987 8899999999999999888888877776554

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=80.03  E-value=2.7  Score=45.56  Aligned_cols=40  Identities=15%  Similarity=0.270  Sum_probs=36.9

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .+++|+|.|..|+.++..|.+.|.++++++.|+++.+.+.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~  440 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMR  440 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHH
Confidence            5799999999999999999999999999999999988763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	409
2gpt_A	523	Crystal Structure Of Arabidopsis Dehydroquinate Deh		1e-102
2o7q_A	523	Crystal Structure Of The A. Thaliana Dhq-Dehydroshi		1e-101
1nvt_A	287	Crystal Structure Of Shikimate Dehydrogenase (Aroe		5e-19
2hk7_A	269	Crystal Structure Of Shikimate Dehydrogenase From A		1e-14
2hk9_A	275	Crystal Structure Of Shikimate Dehydrogenase From A		1e-14
2egg_A	297	Crystal Structure Of Shikimate 5-Dehydrogenase (Aro		1e-13
3don_A	277	Crystal Structure Of Shikimate Dehydrogenase From S		2e-13
3toz_A	315	2.2 Angstrom Crystal Structure Of Shikimate 5-Dehyd		3e-13
4fq8_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		6e-11
4fr5_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		6e-11
4fos_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		7e-11
4foo_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		7e-11
3phg_A	269	Crystal Structure Of The Shikimate 5-Dehydrogenase		7e-11
4fpx_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		8e-11
3js3_A	258	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		2e-10
1npy_A	271	Structure Of Shikimate 5-Dehydrogenase-Like Protein		4e-10
4fsh_A	271	Crystal Structure Of Shikimate Dehydrogenase (aroe)		5e-10
4guf_A	276	1.5 Angstrom Crystal Structure Of The Salmonella En		1e-09
1qfe_A	252	The Structure Of Type I 3-Dehydroquinate Dehydratas		3e-09
3o1n_A	276	1.03 Angstrom Crystal Structure Of Q236a Mutant Typ		3e-09
3l2i_A	276	1.85 Angstrom Crystal Structure Of The 3-Dehydroqui		4e-09
3m7w_A	255	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		5e-09
3t4e_A	312	1.95 Angstrom Crystal Structure Of Shikimate 5-Dehy		7e-09
3fbt_A	282	Crystal Structure Of A Chorismate MutaseSHIKIMATE 5		1e-08
1wxd_A	263	Crystal Structure Of Shikimate 5-dehydrogenase (aro		2e-08
1nyt_A	271	Shikimate Dehydrogenase Aroe Complexed With Nadp+ L		2e-08
1sfl_A	238	1.9a Crystal Structure Of Staphylococcus Aureus Typ		2e-08
3nnt_A	276	Crystal Structure Of K170m Mutant Of Type I 3-Dehyd		2e-08
3o8q_A	281	1.45 Angstrom Resolution Crystal Structure Of Shiki		4e-08
3pgj_A	302	2.49 Angstrom Resolution Crystal Structure Of Shiki		4e-08
3o8q_B	275	1.45 Angstrom Resolution Crystal Structure Of Shiki		4e-08
1sfj_A	238	2.4a Crystal Structure Of Staphylococcus Aureus Typ		7e-08
3tum_B	269	2.15 Angstrom Resolution Crystal Structure Of A Shi		3e-07
1vi2_A	300	Crystal Structure Of Shikimate-5-Dehydrogenase With		4e-07
1npd_A	288	X-Ray Structure Of Shikimate Dehydrogenase Complexe		4e-07
2ox1_A	196	Archaeal Dehydroquinase Length = 196		5e-07
2yr1_A	257	Crystal Structure Of 3-Dehydroquinate Dehydratase F		6e-07
2nlo_A	302	Crystal Structure Of The Quinate Dehydrogenase From		5e-06
3jyo_A	283	Quinate Dehydrogenase From Corynebacterium Glutamic		5e-06
3u62_A	253	Crystal Structure Of Shikimate Dehydrogenase From T		1e-05
2egz_A	219	Crystal Structure Of The 3-Dehydroquinate Dehydrata		1e-05
3pwz_A	272	Crystal Structure Of An Ael1 Enzyme From Pseudomona		6e-04

>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate Dehydratase- Shikimate Dehydrogenase In Complex With Tartrate And Shikimate Length = 523

Iteration: 1
 Score =  369 bits (946), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/402 (47%), Positives = 262/402 (65%), Gaps = 2/402 (0%)
Query: 8   KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
           KN ++ICAP+MA S+++++    +A   GAD+VEIRLD + +F P +DL+ I+ K PLP 
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
           L  YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +           + I
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187
           VS +    TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  QVP I   
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLIS 245
           +GERGL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DTKV+G+I 
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMK 305
           KPV HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P+KEA ++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 306 FCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSP 365
            CDEV PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  +   S  SP
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 366 LAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFEQSLLL 407
           LA +  V+              K +GA+VVI +  +E++L L
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALEL 403

>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H) Length = 523

Iteration: 1
 Score =  365 bits (936), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/402 (47%), Positives = 261/402 (64%), Gaps = 2/402 (0%)
Query: 8   KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
           KN ++ICAP+MA S+++++    +A   GAD+VEIRLD + +F P +DL+ I+ K PLP 
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61
Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
           L  YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +           + I
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121
Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187
           VS +    TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  QVP I   
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181
Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLIS 245
           +GERGL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DTKV+G+I 
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241
Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMK 305
           KPV HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P+KEA ++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301
Query: 306 FCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSP 365
            CDEV PLA++I AVNTI+RR SDGKL+GYNTD   SI+AIED ++  G  +   S  SP
Sbjct: 302 XCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSSSSP 361
Query: 366 LAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFEQSLLL 407
           LA +  V+              K +GA+VVI +  +E++L L
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALEL 403

>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or Mj1084) In Complex With Nadp+ Length = 287

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 70/126 (55%), Gaps = 4/126 (3%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           INA TKV GLI  PV HS  PI+HN  F+    N +YV   V  ++LK       +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           GF+V  P+K  +MK+ DE+   AQ I AVNTI  +  DGK IGYNTD   +  A+E+ I 
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEIG 124
Query: 352 ERGYKN 357
               KN
Sbjct: 125 RVKDKN 130

>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Mercury At 2.5 Angstrom Resolution Length = 269

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           INA T+++G+I  PV HS  P+  N   R+   N +Y+   +  ++LKK F  + +    
Sbjct: 2   INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 61
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KE ++   D V   A+ I AVNT+  +  +GK  GYNTD    + +++  I 
Sbjct: 62  GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 119
Query: 352 E 352
           E
Sbjct: 120 E 120

>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Shikimate And Nadp+ At 2.2 Angstrom Resolution Length = 275

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           INA T+++G+I  PV HS  P+  N   R+   N +Y+   +  ++LKK F  + +    
Sbjct: 8   INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 67
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KE ++   D V   A+ I AVNT+  +  +GK  GYNTD    + +++  I 
Sbjct: 68  GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 125
Query: 352 E 352
           E
Sbjct: 126 E 126

>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Geobacillus Kaustophilus Length = 297

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVG 296
           KV+GLI  PV HS  P++HN  F  +     Y    V+   +    +   +   AG +V 
Sbjct: 24  KVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVT 83
Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAI 350
            P+K AV+ F DEV   A+ I AVNTII   +DG+L+GYNTD    + A+E+ +
Sbjct: 84  IPHKLAVIPFLDEVDEHARRIGAVNTIIN--NDGRLVGYNTDGLGYVQALEEEM 135

>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Staphylococcus Epidermidis Length = 277

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 62/103 (60%), Gaps = 10/103 (9%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVN----YNGIYVPMF-VDDLKKFFSTYSSPDFAGFSV 295
           F +I  P+ HS  P++H+  F+ +N    Y  I VP+    D+KK  S  S     GF+V
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKS---IDGFNV 59
Query: 296 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTD 338
             P+KE ++ + D+++  A+++ AVNT++ +  DGK IGYNTD
Sbjct: 60  TIPHKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTD 100

>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase From Listeria Monocytogenes In Complex With Nad. Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 231 VEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSP 288
            E I   T++ GLI+ P+ HS  P +HN  F  +  + +Y+   V D  LK     + + 
Sbjct: 30  TERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAM 89
Query: 289 DFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIED 348
           +  G++V  P K  + K+ D++ P A+ + AVNT++    DG L G+ TD    + A+++
Sbjct: 90  NLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVN--DDGVLTGHITDGTGYMRALKE 147
Query: 349 A 349
           A
Sbjct: 148 A 148

>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori Length = 269

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Clostridium Difficile With Covalent Reaction Intermediate Length = 258

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 108/234 (46%), Gaps = 14/234 (5%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-----KPLPV 67
           IC P++ ++ + ++    + K    D++E R+D   N +  K+++ +L +       +P+
Sbjct: 22  ICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPL 81
Query: 68  LIVYRPKWAGG--LYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYS-SHQSGT 124
           L  +R    GG  L   D +  L    ++     D +D EL +   ++ +  + +H+   
Sbjct: 82  LFTFRSVVEGGEKLISRDYYTTLNK-EISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEV 140
Query: 125 RFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HC 179
           + I+S +   +TP +E++   + RMQ  GAD+ K+     +  ++  + +  +     + 
Sbjct: 141 KVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYA 200
Query: 180 QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
             PII  S+   G++S+L    F  AL +G+ K     G  + + L     + H
Sbjct: 201 DRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLH 254

>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607 Length = 271

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 234 INADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 292
           IN DT++   L  +P     G   HN  +  +  N IY      D++       +    G
Sbjct: 2   INKDTQLCMSLSGRPSNF--GTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 293 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
            +V  P+KE  M F DE+HP AQAI +VNTI+    +G L  YNTD  A +  IE
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVN--DNGFLRAYNTDYIAIVKLIE 112

>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) Clinical Variant V2356 From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 239 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 294
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       + +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLPLESHIKNEFLHLGLSGAN 63
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 354
           V  P+KE   + CD++  +A   A++NT++    + +L+GYNTD          ++K + 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECASINTLVLE--NDELVGYNTDA----LGFYLSLKHQN 117
Query: 355 YKNG 358
           Y+N 
Sbjct: 118 YQNA 121

>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica 3- Dehydroquinate Dehydratase (arod) E86a Mutant Length = 276

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 16/235 (6%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
           I   LM +++  V S     +    D++E R+D   N        +    +  I+T KPL
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
             L  +R   AGG       + ++    A D G  D +D EL    + +      +HQ  
Sbjct: 102 --LFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
              I+S +   +TP+ E++   + +MQ  GADI K+        ++  +       Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
              PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 274

>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From Salmonella Typhi Length = 252

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 12/233 (5%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDL----EIILTKKP-LPV 67
           I   LM + +  V +     +    D++E R+D   +    + +     +I    P +P+
Sbjct: 18  IIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPL 77
Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRF 126
           L  +R    GG         L     A D G  D +D EL      +        +   +
Sbjct: 78  LFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVY 137
Query: 127 IVSCNLDC-ETPSEEDLGYLVSRMQATGADIIKLVF---SVNDI-TEIARIFQLLSH-CQ 180
           +V  N D  +TPS E++   + +MQA GADI K+     S +D+ T +    ++  H   
Sbjct: 138 VVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYAD 197
Query: 181 VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
            P+I  S+ + G++S+L    F  A  +G++K     G   V  LR    + H
Sbjct: 198 RPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILH 250

>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Length = 276

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
           I   LM +++  V S     +    D++E R+D   N        +    +  I+T KPL
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
             L  +R    GG       + ++    A D G  D +D EL    + +      +HQ  
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
              I+S +   +TP+ E++   + +MQ  GADI K+        ++  +       Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
              PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTILH 274

>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2. Length = 276

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
           I   LM +++  V S     +    D++E R+D   N        +    +  I+T KPL
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
             L  +R    GG       + ++    A D G  D +D EL    + +      +HQ  
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
              I+S +   +TP+ E++   + +MQ  GADI K+        ++  +       Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
              PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 274

>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Covalent Complex With Dehydroquinate Length = 255

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 16/235 (6%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
           I   LM +++  V S     +    D++E R+D   N        +    +  I+T KPL
Sbjct: 21  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 80
Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
             L  +R    GG       + ++    A D G  D +D EL    + +      +HQ  
Sbjct: 81  --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 138
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
              I+S +   +TP+ E++   + +MQ  GADI K+        ++  +       Q   
Sbjct: 139 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERY 198
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
              PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    + H
Sbjct: 199 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 253

>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium In Complex With Nad Length = 312

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 18/129 (13%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSP----- 288
           + A  ++ GL++ P+ HS  P + N           Y+   VD+     +T++S      
Sbjct: 27  VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDN-----TTFASAIEGLK 81
Query: 289 --DFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI 346
                G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I   
Sbjct: 82  ALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIR-- 137
Query: 347 EDAIKERGY 355
             AIKE G+
Sbjct: 138 --AIKESGF 144

>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5- Dehydrogenase Fusion Protein From Clostridium Acetobutylicum Length = 282

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/106 (35%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPMFVDDLKKFFSTYSSPDFAG 292
           +T ++GLI + +GHS    +H   F  V   GIY    VP   + LK+   T+      G
Sbjct: 4   NTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPK--EKLKESVDTFKIIKCGG 61
Query: 293 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTD 338
            +V  PYK  VMK   E+   A+ I AVNT+  + S   + G+NTD
Sbjct: 62  LNVTIPYKVEVMKELYEISEKARKIGAVNTL--KFSREGISGFNTD 105

>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From Thermus Thermophilus Hb8 Length = 263

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY---------VPMFVDDLKKFFSTYSSPDFA 291
           F ++  PV HS  P +H      +   G Y         +P  + ++++ F         
Sbjct: 4   FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRAFR-------- 55
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
           G ++  P KEA +   D V P AQ I AVNT+++   +G+L G+NTD    + A++
Sbjct: 56  GVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQ--VEGRLFGFNTDAPGFLEALK 109

>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+ Length = 271

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVN----YNGIYVPM--FVDDLKKFFSTYSSPDFAG 292
           + + +   P+ HSK P +H    + +N    Y  +  P+  F++ L  FFS        G
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGK----G 57
Query: 293 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
            +V  P+KE      DE+   A    AVNT++R   DG+L+G NTD    ++ +E
Sbjct: 58  ANVTVPFKEEAFARADELTERAALAGAVNTLMRL-EDGRLLGDNTDGVGLLSDLE 111

>pdb|1SFL|A Chain A, 1.9a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, Apo Form Length = 238

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 19/210 (9%)
Query: 21  SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII----LTKKPLPVLIVYRPKWA 76
           S+E+ L      + +  DV+E+R+D   N    +  E+I    + +    +L+ YR K  
Sbjct: 15  SIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQ 74
Query: 77  GGL--YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQY---SSHQSGTRFIVSCN 131
           GG   +  D +  L +  LA   G D +D E +   +I   Q       Q     I+S +
Sbjct: 75  GGYGQFTNDSYLNLIS-DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHH 133
Query: 132 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS------HCQVPIIA 185
               TP  ++L ++  +MQ    + +KL    ++  ++  + Q +S       C+V  + 
Sbjct: 134 NFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VG 191
Query: 186 YSVGERGLVSQLLSPKFNGALVYGSLKGTP 215
            S+ + GL+S+     F GAL YG + G P
Sbjct: 192 ISMSKLGLISRTAQGVFGGALTYGCI-GEP 220

>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Non-Covalent Complex With Dehydroquinate. Length = 276

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 16/235 (6%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN-------FQPGKDLEIILTKKPL 65
           I   LM +++  V S     +    D++E R+D   N        +    +  I+T KPL
Sbjct: 42  IIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPL 101
Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSG 123
             L  +R    GG       + ++    A D G  D +D EL    + +      +HQ  
Sbjct: 102 --LFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHN 159
Query: 124 TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ--- 180
              I+S +   +TP+ E++   + +MQ  GADI  +        ++  +       Q   
Sbjct: 160 VAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPMIAVMPQTKADVLTLLTATVEMQERY 219
Query: 181 --VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
              PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    + H
Sbjct: 220 ADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILH 274

>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 281

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 294
           + +   P+ HSK P +H    R    + IY    VP+  F +  K FF+        G +
Sbjct: 11  YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 66
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCE 340
           V  P+KE   +F D +   A+   AVNT +++  DG+++G NTD E
Sbjct: 67  VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGE 111

>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Shikimate Length = 302

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 294
           + +   P+ HSK P +H    R    + IY    VP+  F +  K FF+        G +
Sbjct: 32  YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 87
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEA 341
           V  P+KE   +F D +   A+   AVNT +++  DG+++G NTD E 
Sbjct: 88  VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEG 133

>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 275

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 294
           + +   P+ HSK P +H    R    + IY    VP+  F +  K FF+        G +
Sbjct: 5   YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 60
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASI 343
           V  P+KE   +F D +   A+   AVNT +++  DG+++G NTD E  +
Sbjct: 61  VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEGLV 108

>pdb|1SFJ|A Chain A, 2.4a Crystal Structure Of Staphylococcus Aureus Type I 3- Dehydroquinase, With 3-Dehydroquinate Bound Length = 238

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 19/209 (9%)
Query: 22  VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII----LTKKPLPVLIVYRPKWAG 77
           +E+ L      + +  DV+E+R+D   N    +  E+I    + +    +L+ YR K  G
Sbjct: 16  IEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQG 75
Query: 78  GL--YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQY---SSHQSGTRFIVSCNL 132
           G   +  D +  L +  LA   G D +D E +   +I   Q       Q     I+S + 
Sbjct: 76  GYGQFTNDSYLNLIS-DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHN 134
Query: 133 DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS------HCQVPIIAY 186
              TP  ++L ++  +MQ    + +KL    ++  ++  + Q +S       C+V  +  
Sbjct: 135 FESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV--VGI 192
Query: 187 SVGERGLVSQLLSPKFNGALVYGSLKGTP 215
           S+ + GL+S+     F GAL YG + G P
Sbjct: 193 SMSKLGLISRTAQGVFGGALTYGCI-GEP 220

>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad Length = 300

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 291
           + A  ++ GL + P+ HS  P   N           Y    VD+           +    
Sbjct: 5   VTAKYELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXR 64
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I     AIK
Sbjct: 65  GTGVSXPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIR----AIK 118
Query: 352 ERGY 355
           E G+
Sbjct: 119 ESGF 122

>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With Nad+ From E.Coli (Ydib) Northeast Structural Genomics Research Consortium (Nesg) Target Er24 Length = 288

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 291
           + A  ++ GL + P+ HS  P   N           Y    VD+           +    
Sbjct: 3   VTAKYELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXR 62
Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I     AIK
Sbjct: 63  GTGVSXPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIR----AIK 116
Query: 352 ERGY 355
           E G+
Sbjct: 117 ESGF 120

>pdb|2OX1|A Chain A, Archaeal Dehydroquinase Length = 196

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 21/176 (11%)
Query: 34  AEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHL 93
           AE ADVVE+R+D  +      D E ILT + +           GG +EGDE +R+E +  
Sbjct: 16  AEKADVVELRIDLFDFSGARVDKEKILTCRRVS---------DGGKFEGDERERIEKMKR 66
Query: 94  AED-LGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQAT 152
           A D L  DYVD E  +         S+     R I S +    TP   +L  +V   +  
Sbjct: 67  AFDSLNPDYVDLESDLPD-------SAFDFNCRIIESYHNFIRTPDYSELKGIVEGRRGD 119
Query: 153 GADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVY 208
              I  +  S  D+  I RI          ++A+ +GER   +++L+       +Y
Sbjct: 120 LVKIATMGKSKRDVETIVRILTNYDD----VVAFLMGERFSFTRVLAAYLGSPFIY 171

>pdb|2YR1|A Chain A, Crystal Structure Of 3-Dehydroquinate Dehydratase From Geobacillus Kaustophilus Hta426 Length = 257

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 104/240 (43%), Gaps = 29/240 (12%)
Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK--------P 64
           ICAP++ +   +VL    +   +  D++E R D    F+   D E +L            
Sbjct: 22  ICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADF---FRAIDDQERVLATANGLRNIAGE 78
Query: 65  LPVLIVYRPKWAGG----LYEGDEHKRLEALHLAEDLGA-DYVDFELKVASNILGKQYSS 119
           +P+L   R +  GG    L E +  + +EA+  +   GA D VD+EL     I   +  +
Sbjct: 79  IPILFTIRSEREGGQPIPLNEAEVRRLIEAICRS---GAIDLVDYELAYGERIADVRRMT 135
Query: 120 HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC 179
            +     +VS +    TP +E L   + + +  GADI K+        ++  + Q     
Sbjct: 136 EECSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEA 195
Query: 180 Q----VPIIAYSVGERGLVSQLLSPKFNGALVYG-----SLKGT-PVLGLPTVESLRQTY 229
           +    +P+I  ++G  G +++L    F  A+ +      S  G  P+  + TV S+ QTY
Sbjct: 196 RRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSILQTY 255

>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From Corynebacterium Glutamicum Length = 302

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 237 DTKVFGLISKPVGHSKGPILHNP---------TFRHVNYNGIYVPMFVDDLKKFFSTYSS 287
           D+ + GLI + +  S+ P +H            +R ++  G        DLK        
Sbjct: 22  DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASG--QDLKTLLDAALY 79
Query: 288 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
             F G ++  PYK+AV+   DEV   A  + AVNT++   + G   G+NTD       +E
Sbjct: 80  LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDAT-GHTTGHNTDVSGFGRGME 138
Query: 348 DAI 350
           + +
Sbjct: 139 EGL 141

>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In Complex With Nad Length = 283

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 237 DTKVFGLISKPVGHSKGPILHNP---------TFRHVNYNGIYVPMFVDDLKKFFSTYSS 287
           D+ + GLI + +  S+ P +H            +R ++  G        DLK        
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASG--QDLKTLLDAALY 60
Query: 288 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 347
             F G ++  PYK+AV+   DEV   A  + AVNT++   + G   G+NTD       +E
Sbjct: 61  LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDAT-GHTTGHNTDVSGFGRGME 119
Query: 348 DAI 350
           + +
Sbjct: 120 EGL 122

>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Thermotoga Maritima Length = 253

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VP--MFVDDLKKFFSTYSSPDFAGFS 294
           F +I  PV HS  P L+N  F+    N  Y    +P   F  ++++    Y      GF+
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYD-----GFN 57
Query: 295 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI 346
              P+KE VM++ +     AQ I AVN + R    GK  GYNTD    + ++
Sbjct: 58  ATIPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDWVGVVKSL 102

>pdb|2EGZ|A Chain A, Crystal Structure Of The 3-Dehydroquinate Dehydratase From Aquifex Aeolicus Vf5 Length = 219

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 26/211 (12%)
Query: 12  MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVL 68
           +I  PL   +  +   N+ +AK +GAD+VE+R+D  ++       + LE + ++    +L
Sbjct: 2   LIAVPLDDTNFSE---NLKKAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58
Query: 69  IVYRPKWAGGLYEGDEHKRLEALHLAEDLG--ADYVDFELKVASNILGKQYS-SHQSGTR 125
            +  P+  G   +  E        L E+L   +DY D EL  +  +L K Y+ + ++G +
Sbjct: 59  TIRSPEEGGREVKNREE-------LFEELSPLSDYTDIELS-SRGLLVKLYNITKEAGKK 110
Query: 126 FIVSC-NLDCETPSEEDLGYLVSRMQATG---ADIIKLVFSVNDITEIARIFQLLSHCQV 181
            I+S  N +   P+     +++  +   G     I K+    N   ++AR+  +    + 
Sbjct: 111 LIISYHNFELTPPN-----WIIREVLREGYRYGGIPKIAVKANSYEDVARLLCISRQVEG 165
Query: 182 PIIAYSVGERGLVSQLLSPKFNGALVYGSLK 212
             I  S+G+ G +S+L    F   + Y SL+
Sbjct: 166 EKILISMGDYGKISRLAGYVFGSVITYCSLE 196

>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas Putida Length = 272

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 241 FGLISKPVGHSKGPILH----NPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVG 296
           + +I +P+ H+K P++H      + + + Y  I   +  DD +     + S    G ++ 
Sbjct: 5   YAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSL--DDFEAQVLQFRSEGGKGMNIT 62
Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE 352
            P+K    +  D     AQ   A N +  +  DG+++  N D    +  IE+ + E
Sbjct: 63  APFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEENLGE 116

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	1e-156
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	2e-58
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	1e-54
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	1e-53
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	1e-53
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	3e-53
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	5e-53
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	3e-52
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	3e-51
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	2e-49
3js3_A	258	3-dehydroquinate dehydratase; AROD, covalent react	6e-49
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	4e-48
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	5e-47
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	1e-46
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	4e-46
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	7e-46
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	3e-45
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	6e-45
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	4e-43
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	6e-41
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	9e-35
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	4e-34
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	1e-33
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	2e-33
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	7e-33

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Length = 523

 Score =  450 bits (1160), Expect = e-156
 Identities = 201/397 (50%), Positives = 271/397 (68%), Gaps = 2/397 (0%)

Query: 8   KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV 67
           KN ++ICAP+MA S+++++    +A   GAD+VEIRLD + +F P +DL+ I+ K PLP 
Sbjct: 2   KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPT 61

Query: 68  LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFI 127
           L  YRPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +           + I
Sbjct: 62  LFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVI 121

Query: 128 VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 187
           VS +    TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  QVP I   
Sbjct: 122 VSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLV 181

Query: 188 VGERGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLIS 245
           +GERGL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DTKV+G+I 
Sbjct: 182 MGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG 241

Query: 246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMK 305
           KPV HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P+KEA ++
Sbjct: 242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQ 301

Query: 306 FCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSP 365
            CDEV PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  +   S  SP
Sbjct: 302 CCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSP 361

Query: 366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402
           LA +  V+ GAGGAG+ALA+GAK +GA+VVI +  +E
Sbjct: 362 LASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYE 398

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* Length = 312

 Score =  192 bits (489), Expect = 2e-58
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 18/186 (9%)

Query: 218 GLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-- 275
                E+L        + A  ++ GL++ P+ HS  P + N           Y+   V  
Sbjct: 11  VDLGTENLYFQSNAMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDN 70

Query: 276 DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGY 335
                      +    G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GY
Sbjct: 71  TTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGY 128

Query: 336 NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RV 394
           NTD    I AI+++             G  + G+  VL GAGGA  A+   A   G   +
Sbjct: 129 NTDGTGHIRAIKES-------------GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEI 175

Query: 395 VIFDID 400
            +F+  
Sbjct: 176 KLFNRK 181

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A Length = 219

 Score =  179 bits (456), Expect = 1e-54
 Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 10/224 (4%)

Query: 12  MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII--LTKKPLPVLI 69
           +I  PL   +  + L    +AK +GAD+VE+R+D  ++       E +  +  + L  ++
Sbjct: 2   LIAVPLDDTNFSENLK---KAKEKGADIVELRVDQFSDTSLNYVKEKLEEVHSQGLKTIL 58

Query: 70  VYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVS 129
             R    GG    +  +  E L       +DY D EL     ++     + ++G + I+S
Sbjct: 59  TIRSPEEGGREVKNREELFEELSP----LSDYTDIELSSRGLLVKLYNITKEAGKKLIIS 114

Query: 130 CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 189
            +    TP    +  ++      G  I K+    N   ++AR+  +    +   I  S+G
Sbjct: 115 YHNFELTPPNWIIREVLREGYRYG-GIPKIAVKANSYEDVARLLCISRQVEGEKILISMG 173

Query: 190 ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 233
           + G +S+L    F   + Y SL+     G   +E + +  K  +
Sbjct: 174 DYGKISRLAGYVFGSVITYCSLEKAFAPGQIPLEEMVELRKKFY 217

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* Length = 315

 Score =  179 bits (457), Expect = 1e-53
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 18/167 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           I   T++ GLI+ P+ HS  P +HN  F  +  + +Y+   V   +LK     + + +  
Sbjct: 33  ITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLR 92

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G++V  P K  + K+ D++ P A+ + AVNT++    DG L G+ TD    + A+++A  
Sbjct: 93  GWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA-- 148

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF 397
                      G  + G+   + GAGGA  A+   A   G   + IF
Sbjct: 149 -----------GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIF 184

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Length = 287

 Score =  178 bits (455), Expect = 1e-53
 Identities = 64/171 (37%), Positives = 86/171 (50%), Gaps = 18/171 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           INA TKV GLI  PV HS  PI+HN  F+    N +YV   V  ++LK       +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           GF+V  P+K  +MK+ DE+   AQ I AVNTI     DGK IGYNTD   +  A+E+   
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEE-- 122

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402
                         +  +  V+ GAGGA RA+AF    +   ++I +   E
Sbjct: 123 -----------IGRVKDKNIVIYGAGGAARAVAFELA-KDNNIIIANRTVE 161

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* Length = 238

 Score =  176 bits (447), Expect = 3e-53
 Identities = 54/234 (23%), Positives = 96/234 (41%), Gaps = 13/234 (5%)

Query: 11  TMICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK----PL 65
             + A +  Q S+E+ L      + +  DV+E+R+D   N    +  E+I   K      
Sbjct: 4   VEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSF 63

Query: 66  PVLIVYRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQY---SSHQ 121
            +L+ YR K  GG  +      L  +  LA   G D +D E +   +I   Q       Q
Sbjct: 64  KLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQ 123

Query: 122 SGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC-- 179
                I+S +    TP  ++L ++  +MQ    + +KL    ++  ++  + Q +S    
Sbjct: 124 YNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSD 183

Query: 180 --QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231
                ++  S+ + GL+S+     F GAL YG +      G   V  L+    +
Sbjct: 184 TMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL 237

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  176 bits (448), Expect = 5e-53
 Identities = 44/241 (18%), Positives = 89/241 (36%), Gaps = 11/241 (4%)

Query: 4   VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK- 62
           + I      ICAP++ +   +VL    +   +  D++E R D        + +       
Sbjct: 13  IWIGGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGL 72

Query: 63  ----KPLPVLIVYRPKWAGGLYEGDEHKRLEAL--HLAEDLGADYVDFELKVASNILGKQ 116
                 +P+L   R +  GG         +  L   +      D VD+EL     I   +
Sbjct: 73  RNIAGEIPILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVR 132

Query: 117 YSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLL 176
             + +     +VS +    TP +E L   + + +  GADI K+        ++  + Q  
Sbjct: 133 RMTEECSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQAT 192

Query: 177 SHCQ----VPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE 232
              +    +P+I  ++G  G +++L    F  A+ +     +   G   ++ +R    + 
Sbjct: 193 EEARRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSIL 252

Query: 233 H 233
            
Sbjct: 253 Q 253

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  175 bits (445), Expect = 3e-52
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 20/171 (11%)

Query: 234 INADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 292
           IN DT++   L  +P   + G   HN  +  +  N IY      D++       +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 293 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE 352
            +V  P+KE  M F DE+HP AQAI +VNTI+    +G L  YNTD  A +  IE     
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117

Query: 353 RGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFE 402
           +               ++ V  G+GG  +A+    K+ G  ++ I+  + +
Sbjct: 118 KN-------------AKVIVH-GSGGMAKAVVAAFKNSGFEKLKIYARNVK 154

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275

 Score =  172 bits (438), Expect = 3e-51
 Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 17/171 (9%)

Query: 229 YKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYS 286
           +    INA T+++G+I  PV HS  P+  N   R+   N +Y+   +  ++LKK F  + 
Sbjct: 3   HHHHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFK 62

Query: 287 SPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI 346
           +    G +V  P+KE ++   D V   A+ I AVNT+     +GK  GYNTD    + ++
Sbjct: 63  ALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSL 120

Query: 347 EDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF 397
           +                  +  +  ++ GAGGA RA+ +     GA+V ++
Sbjct: 121 KSL-------------IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLW 158

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A Length = 283

 Score =  168 bits (427), Expect = 2e-49
 Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 22/174 (12%)

Query: 237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPD 289
           D+ + GLI + +  S+ P +H           +Y  +          DLK          
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62

Query: 290 FAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDA 349
           F G ++  PYK+AV+   DEV   A  + AVNT++     G   G+NTD       +E+ 
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG 121

Query: 350 IKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFE 402
                                 V  GAGG G A+A+   + G  ++ + D+D  
Sbjct: 122 -------------LPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTS 162

>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile} Length = 258

 Score =  165 bits (420), Expect = 6e-49
 Identities = 49/246 (19%), Positives = 108/246 (43%), Gaps = 12/246 (4%)

Query: 4   VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK- 62
           + I +    IC P++ ++ + ++    + K    D++E R+D   N +  K+++ +L + 
Sbjct: 13  ITIGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYEL 72

Query: 63  ----KPLPVLIVYRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGK-Q 116
                 +P+L  +R    GG               ++     D +D EL +   ++ +  
Sbjct: 73  RSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVV 132

Query: 117 YSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLL 176
             +H+   + I+S +   +TP +E++   + RMQ  GAD+ K+     +  ++  + +  
Sbjct: 133 NFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEAT 192

Query: 177 S-----HCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231
           +     +   PII  S+   G++S+L    F  AL +G+ K     G  + + L     +
Sbjct: 193 NEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNL 252

Query: 232 EHINAD 237
            H + +
Sbjct: 253 LHKSIN 258

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1} Length = 231

 Score =  162 bits (412), Expect = 4e-48
 Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 14/234 (5%)

Query: 9   NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPV 67
           N   I AP+M +  ++  + +  +K E  +++E R D +   +       I  K     +
Sbjct: 2   NAMRIVAPVMPRHFDEAQA-IDISKYEDVNLIEWRADFLPKDEIVAVAPAIFEKFAGKEI 60

Query: 68  LIVYRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRF 126
           +   R    GG       + ++ +  +      DY+DFE     ++  +           
Sbjct: 61  IFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEMLDFP----NL 116

Query: 127 IVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HCQV 181
           I+S +   ETP  E+L    S M      ++K+        ++  +          + + 
Sbjct: 117 ILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQ 174

Query: 182 PIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 235
                S+G+ G +S+        +  Y SL      G  T+  +++  +V  ++
Sbjct: 175 EFATISMGKLGRLSRFAGDVIGSSWTYVSLDHVSGPGQVTLNDMKRIIEVLEMD 228

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Length = 297

 Score =  161 bits (411), Expect = 5e-47
 Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 17/172 (9%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
                KV+GLI  PV HS  P++HN  F  +     Y    V    +    +   +   A
Sbjct: 19  QGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIA 78

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+K AV+ F DEV   A+ I AVNTII    DG+L+GYNTD    + A+E+   
Sbjct: 79  GVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEE-- 134

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFE 402
                         L G+  ++ GAGG  R + F   S  A R+ + +   E
Sbjct: 135 ----------MNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVE 176

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A 1l9w_A* 1qfe_A* Length = 276

 Score =  160 bits (405), Expect = 1e-46
 Identities = 52/242 (21%), Positives = 96/242 (39%), Gaps = 12/242 (4%)

Query: 4   VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK- 62
           + + +    I   LM +++  V S     +    D++E R+D   N    + +       
Sbjct: 33  LVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAI 92

Query: 63  ----KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGK-Q 116
                  P+L  +R    GG       + ++    A D G  D +D EL    + +    
Sbjct: 93  REIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATV 152

Query: 117 YSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLL 176
             +HQ     I+S +   +TP+ E++   + +MQ  GADI K+        ++  +    
Sbjct: 153 GYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTAT 212

Query: 177 S-----HCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231
                 +   PII  S+ + G++S+L    F  A  +G++K     G  +V  LR    +
Sbjct: 213 VEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTI 272

Query: 232 EH 233
            H
Sbjct: 273 LH 274

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* Length = 263

 Score =  158 bits (403), Expect = 4e-46
 Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 19/166 (11%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 296
             F ++  PV HS  P +H      +   G Y       + L           F G ++ 
Sbjct: 2   LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRR-AFRGVNLT 60

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 356
            P KEA +   D V P AQ I AVNT+++   +G+L G+NTD    + A++         
Sbjct: 61  LPLKEAALAHLDWVSPEAQRIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAG------- 111

Query: 357 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE 402
                 G PL G   VL GAGGAGRA+AF  +  G  V +++   +
Sbjct: 112 ------GIPLKGPALVL-GAGGAGRAVAFALREAGLEVWVWNRTPQ 150

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Length = 282

 Score =  158 bits (402), Expect = 7e-46
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           ++ +T ++GLI + +GHS    +H   F  V   GIY    V  + LK+   T+      
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  PYK  VMK   E+   A+ I AVNT+        + G+NTD       +     
Sbjct: 61  GLNVTIPYKVEVMKELYEISEKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSK--- 115

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFE 402
                     F   +   + V+ G+GGA RA+    K   A+ + +   + E
Sbjct: 116 ----------FRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPE 157

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans} Length = 259

 Score =  156 bits (395), Expect = 3e-45
 Identities = 44/239 (18%), Positives = 93/239 (38%), Gaps = 14/239 (5%)

Query: 4   VNITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK- 62
             + + +  I  P+M Q++E+    +   + +  D++E R D +           I  K 
Sbjct: 28  QQMGRGSMKIVVPVMPQNIEEANQ-LDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKF 86

Query: 63  KPLPVLIVYRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQ 121
               V+   R +  GG         L  +  +A     DY+DFE     ++L + Y    
Sbjct: 87  SGHEVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMYDF-- 144

Query: 122 SGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS---- 177
             +  I+S +   ETP  E+L  + S + A    ++K+     +  ++  +         
Sbjct: 145 --SNLILSYHNFEETP--ENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKT 200

Query: 178 -HCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 235
            +     +  S+ + G +S+L +     +  + SL+     G  ++  +R+  +V   N
Sbjct: 201 LNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQESAPGQISLADMRKIKEVLDAN 259

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus} Length = 196

 Score =  153 bits (388), Expect = 6e-45
 Identities = 49/220 (22%), Positives = 88/220 (40%), Gaps = 29/220 (13%)

Query: 13  ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYR 72
           + A L +              AE ADVVE+R+D  +      D E ILT          R
Sbjct: 3   LVATLSSPEEL--------ELAEKADVVELRIDLFDFSGARVDKEKILT---------CR 45

Query: 73  PKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 131
               GG +EGDE +R+E +    + L  DYVD E  +  +             R I S +
Sbjct: 46  RVSDGGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPDSA-------FDFNCRIIESYH 98

Query: 132 LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 191
               TP   +L      ++    D++K+        ++  I ++L++    ++A+ +GER
Sbjct: 99  NFIRTPDYSEL---KGIVEGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGER 154

Query: 192 GLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231
              +++L+       +Y  +      G  +++  R+    
Sbjct: 155 FSFTRVLAAYLGSPFIYCYVGSPKAPGQISLDDAREIISR 194

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* Length = 269

 Score =  150 bits (382), Expect = 4e-43
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 23/163 (14%)

Query: 238 TKVFGLISKPVGHSKGPILHNPTFR----HVNYNGIYVPMFVDDLKKFFSTYSSPDFAGF 293
            K FG+   P+ HSK P++HN  F      + + G Y P+ +       S +     +G 
Sbjct: 3   LKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGA 62

Query: 294 SVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKER 353
           +V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD      +++      
Sbjct: 63  NVTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ----- 115

Query: 354 GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396
                          +  ++ GAGG+ +ALA   K +G +V +
Sbjct: 116 ------------KNYQNALILGAGGSAKALACELKKQGLQVSV 146

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* Length = 277

 Score =  145 bits (368), Expect = 6e-41
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 18/160 (11%)

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFP 298
           F +I  P+ HS  P++H+  F+ +N    Y  + V  +  +      S     GF+V  P
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62

Query: 299 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 358
           +KE ++ + D+++  A+++ AVNT++ +  DGK IGYNTD    +  ++           
Sbjct: 63  HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQI--------- 111

Query: 359 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF 397
                  +     ++ GAGGA + +A          + + 
Sbjct: 112 ----YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVA 147

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  128 bits (325), Expect = 9e-35
 Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 16/160 (10%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 296
           + + +   P+ HSK P +H    + +N    Y  +    +D     + + S    G +V 
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 356
            P+KE      DE+   A    AVNT++R   DG+L+G NTD    ++ +E         
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERL------- 113

Query: 357 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396
                      G   +L GAGGA R +     S    V I
Sbjct: 114 ------SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTI 147

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* Length = 281

 Score =  127 bits (321), Expect = 4e-34
 Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 291
           + +    + +   P+ HSK P +H    R    + IY    V  D   +    + +    
Sbjct: 4   MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 63

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 351
           G +V  P+KE   +F D +   A+   AVNT+ +   DG+++G NTD E  +  +     
Sbjct: 64  GCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLAQ-- 120

Query: 352 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIF 397
                         L G   +L GAGGA R +      +  A + + 
Sbjct: 121 -----------QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVT 156

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} Length = 253

 Score =  124 bits (315), Expect = 1e-33
 Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 27/160 (16%)

Query: 241 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFP 298
           F +I  PV HS  P L+N  F+    N  Y    +  +            ++ GF+   P
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILE-EYDGFNATIP 61

Query: 299 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 358
           +KE VM++ +     AQ I AVN + R        GYNTD    + ++E           
Sbjct: 62  HKERVMRYVEPS-EDAQRIKAVNCVFR------GKGYNTDWVGVVKSLE----------- 103

Query: 359 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF 397
               G  +   + V+ GAGGA RA+ +     G   + + 
Sbjct: 104 ----GVEVKEPVVVV-GAGGAARAVIYALLQMGVKDIWVV 138

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* Length = 272

 Score =  124 bits (315), Expect = 2e-33
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 16/160 (10%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 296
            ++ +   P+  SK P++ N      +    Y+      D  ++    +      G ++ 
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 356
            P+KE   +  DE    A+   A NT+ +   DGKL   NTD    +T ++         
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNTDGIGLVTDLQRL------- 113

Query: 357 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 396
                       +  ++ GAGGA + +          +V+
Sbjct: 114 ------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVL 147

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} Length = 272

 Score =  123 bits (312), Expect = 7e-33
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 17/162 (10%)

Query: 238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSV 295
           +  + +I +P+ H+K P++H    +  N    Y  +    DD +     + S    G ++
Sbjct: 2   SDRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNI 61

Query: 296 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 355
             P+K    +  D     AQ   A N +     DG+++  N D    +  IE+ +     
Sbjct: 62  TAPFKLRAFELADRRSERAQLARAANALKFE--DGRIVAENFDGIGLLRDIEENL----- 114

Query: 356 KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVI 396
                  G PL  R  +L GAGGA R         G + +VI
Sbjct: 115 -------GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVI 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	100.0
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	100.0
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	100.0
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	100.0
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	100.0
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	100.0
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	100.0
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	100.0
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	100.0
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	100.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	100.0
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	100.0
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	100.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	100.0
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	100.0
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	100.0
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	100.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	100.0
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	100.0
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	100.0
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	100.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	100.0
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	100.0
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	100.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	100.0
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	100.0
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.92
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	99.9
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.53
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.74
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.72
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.64
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.64
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	97.83
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.69
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.65
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.52
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.39
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	97.34
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.27
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.23
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.2
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.16
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.15
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	97.07
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.9
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	96.88
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.88
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.81
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.79
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.77
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.68
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.67
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	96.6
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.53
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.51
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.49
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	96.47
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	96.4
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.37
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	96.36
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.34
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.34
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	96.31
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.26
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.22
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.19
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.18
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.17
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.12
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	96.12
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.12
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.11
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.1
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	96.08
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.07
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.06
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.05
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.01
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.01
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	96.0
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.0
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.99
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.99
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	95.98
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	95.98
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	95.98
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	95.98
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.98
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	95.96
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	95.95
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	95.95
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	95.95
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.95
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.94
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	95.94
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.9
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	95.89
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	95.88
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	95.87
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.86
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	95.84
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	95.82
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.81
3cxt_A	291	Dehydrogenase with different specificities; rossma	95.8
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.78
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	95.76
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	95.7
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	95.69
1xhl_A	297	Short-chain dehydrogenase/reductase family member	95.67
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	95.56
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.55
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	95.53
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.47
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.45
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	95.43
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	95.39
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	95.39
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	95.33
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.32
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.31
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.3
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	95.3
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	95.27
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	95.26
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	95.24
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.22
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	95.14
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.14
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	95.11
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.08
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	95.08
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.08
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	95.03
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	95.02
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.02
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	95.01
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.01
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.0
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	94.99
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	94.95
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.93
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	94.92
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.92
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.86
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	94.83
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	94.81
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	94.8
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	94.78
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	94.77
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	94.77
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.76
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.74
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	94.73
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	94.61
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	94.57
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	94.54
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	94.53
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	94.5
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	94.47
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	94.46
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.44
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.43
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	94.42
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.37
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	94.36
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.34
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	94.3
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	94.2
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	94.19
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	94.19
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	94.18
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.18
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	94.18
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	94.11
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.1
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	94.1
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.08
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.08
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.06
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	94.03
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	94.02
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	94.01
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	93.98
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	93.95
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.91
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.88
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	93.87
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	93.87
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	93.86
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	93.83
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.8
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	93.77
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	93.77
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.76
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	93.76
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.67
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	93.67
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	93.66
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	93.63
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.6
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.56
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	93.52
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	93.52
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	93.49
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	93.44
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.43
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	93.41
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	93.4
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	93.39
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	93.39
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	93.37
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.36
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	93.33
1yx1_A	264	Hypothetical protein PA2260; structural genomics,	93.29
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	93.27
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	93.24
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	93.21
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	93.2
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	93.16
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	93.15
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.15
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	93.14
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	93.13
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	93.12
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.1
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	93.1
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	93.09
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.06
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	93.03
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	92.97
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	92.94
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	92.9
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	92.88
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.86
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	92.84
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	92.84
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.81
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	92.8
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	92.79
3e49_A	311	Uncharacterized protein DUF849 with A TIM barrel;	92.77
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	92.73
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.71
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	92.68
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	92.67
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	92.64
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	92.63
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	92.62
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	92.61
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.59
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	92.59
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	92.58
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	92.58
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	92.57
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	92.57
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	92.49
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	92.46
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	92.45
3e02_A	311	Uncharacterized protein DUF849; structural genomic	92.44
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	92.44
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	92.39
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	92.37
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	92.33
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	92.28
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	92.28
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	92.28
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	92.28
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	92.24
2q02_A	272	Putative cytoplasmic protein; structural genomics,	92.12
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	92.11
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	92.1
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	92.07
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	92.07
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	92.06
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	92.02
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	91.96
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	91.93
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.93
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	91.92
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	91.89
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	91.89
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	91.87
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	91.86
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	91.83
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	91.82
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	91.8
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	91.79
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.77
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	91.74
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	91.74
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	91.72
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	91.7
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	91.69
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	91.68
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	91.65
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	91.61
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	91.6
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	91.58
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	91.57
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	91.52
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	91.48
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	91.44
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	91.42
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	91.38
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	91.35
3oa3_A	288	Aldolase; structural genomics, seattle structural	91.34
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	91.32
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	91.29
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	91.22
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	91.19
4ezb_A	317	Uncharacterized conserved protein; structural geno	91.17
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	91.13
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	91.09
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.0
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	90.96
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	90.9
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	90.85
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	90.76
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.74
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	90.73
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	90.65
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	90.56
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	90.53
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	90.5
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	90.48
2bry_A	497	NEDD9 interacting protein with calponin homology a	90.47
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	90.43
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	90.39
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	90.38
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	90.36
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	90.31
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	90.29
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	90.29
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	90.27
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	90.04
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	89.97
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	89.93
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	89.91
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	89.36
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	89.83
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	89.69
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	89.68
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	89.67
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	89.65
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	89.6
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	89.59
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	89.59
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	89.57
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	89.56
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	89.56
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	89.53
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	89.5
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	89.5
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	89.48
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	89.42
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	89.41
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	89.29
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	89.25
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	89.15
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	89.01
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	89.01
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	89.0
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	88.93
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	88.93
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	88.91
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	88.86
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	88.84
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	88.83
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	88.81
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	88.76
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	88.76
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	88.72
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	88.69
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	88.61
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	88.57
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	88.49
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	88.46
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	88.43
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	88.41
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	88.4
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	88.37
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	88.34
4f6c_A	427	AUSA reductase domain protein; thioester reductase	88.34
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	88.3
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	88.29
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	88.26
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	88.22
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	88.14
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	88.13
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	88.01
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	87.87
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	87.85
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	87.8
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	87.77
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	87.77
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	87.68
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	87.67
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	87.62
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	87.6
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	87.57
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	87.46
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	87.45
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	87.44
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	87.25
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	87.24
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	87.22
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	87.22
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	87.19
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	87.18
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	87.17
2g0w_A	296	LMO2234 protein; putative sugar isomerase, structu	87.17
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	87.11
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	87.07
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	87.06
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	87.04
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	87.03
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	86.92
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	86.9
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	86.88
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	86.69
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	86.67
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	86.52
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	86.48
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	86.45
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	86.35
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	86.3
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	86.28
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	86.21
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	86.2
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	86.1
2y5s_A	294	DHPS, dihydropteroate synthase; transferase, folat	86.04
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	85.96
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	85.92
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	85.89
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	85.88
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	85.85
4djd_D	323	C/Fe-SP, corrinoid/iron-sulfur protein small subun	85.82
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	85.79
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	85.78
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	85.73
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	85.71
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	85.71
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	85.69
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	85.63
2zvr_A	290	Uncharacterized protein TM_0416; hyperthermophIle,	85.48
1f6y_A	262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	85.48
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	85.44
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	85.36
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	85.35
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	85.31
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	85.27
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	85.19
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	85.15
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	85.14
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	85.13
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	85.11
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	85.08
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	85.01
3lot_A	314	Uncharacterized protein; protein of unknown functi	84.76
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	84.72
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	84.72
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	84.7
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	84.69
4djd_C	446	C/Fe-SP, corrinoid/iron-sulfur protein large subun	84.68
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	84.55
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	84.54
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	84.52
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	84.48
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	84.34
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	84.3
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	84.2
2y7e_A	282	3-keto-5-aminohexanoate cleavage enzyme; lyase, al	84.18
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	84.1
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	84.03
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	83.99
1gve_A	327	Aflatoxin B1 aldehyde reductase member 3; oxidored	83.96
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	83.93
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	83.86
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	83.77
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	83.72
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	83.6
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	83.6
2ztj_A	382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	83.58
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	83.55
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	83.49
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	83.39
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	83.37
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	83.36
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	83.35
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	83.28
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	83.23
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	83.18
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	83.17
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	83.03
3ewb_X	293	2-isopropylmalate synthase; LEUA, structural genom	83.01
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	82.97
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	82.9
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	82.85
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	82.8
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	82.68

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=100.00  E-value=3.3e-99  Score=791.89  Aligned_cols=401  Identities=50%  Similarity=0.861  Sum_probs=361.6

Q ss_pred             CCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHH
Q 015310            8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (409)
Q Consensus         8 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (409)
                      +|+|+|||||++++.+|++.+++++.+.|+|+||||+|+|++.++.+++..+++..++|+|||+|+++|||.++.++++|
T Consensus         2 ~~~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRvD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   81 (523)
T 2o7s_A            2 KNPSLICAPVMADSIDKMVIETSKAHELGADLVEIRLDWLKDFNPLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDENER   81 (523)
T ss_dssp             CSCCEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEEGGGCSSCCHHHHHHHHHHHCSSCEEEECCBGGGTSSBCSCHHHH
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHHhhhcCCCEEEEEEecccccChHHHHHHHHhcCCCcEEEEecccccCCCCCCCHHHH
Confidence            68999999999999999999999888899999999999999876666888888888999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015310           88 LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT  167 (409)
Q Consensus        88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~  167 (409)
                      +++|+.++++|+||||||++.+++.++.+...+..++|+|+|||||++||++++|.+++++|+++||||+|+|+||++.+
T Consensus        82 ~~ll~~~~~~~~~yiDvEl~~~~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~~~~~~~~~~~~gaDivKia~~a~~~~  161 (523)
T 2o7s_A           82 RDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIA  161 (523)
T ss_dssp             HHHHHHHHHHTCSEEEEEHHHHHHHHHHTTTCCCTTCEEEEEEECSSCCCCHHHHHHHHHHHHTTTCSEEEEEEECSSGG
T ss_pred             HHHHHHHHHhCCCEEEEECCCchHHHHHHHHhccCCCEEEEEcccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHH
Confidence            99999999999999999999988887777655556899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCCC--CCCCCCCHHHHHhhhhhccccccceEEeeec
Q 015310          168 EIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGT--PVLGLPTVESLRQTYKVEHINADTKVFGLIS  245 (409)
Q Consensus       168 D~~~ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~--sAPGQ~~~~~l~~~~~~~~i~~~~~~~~viG  245 (409)
                      |+++|++++.+.+.|+|+|+||+.|++||+++++|||++||++++.+  +||||+++++++++|++.+++.++++|||||
T Consensus       162 D~~~l~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lt~~~l~~~~~sApGQ~~~~~l~~~~~~~~~~~~~~~~~viG  241 (523)
T 2o7s_A          162 DVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIG  241 (523)
T ss_dssp             GHHHHHHHHHHCSSCEEEEEESGGGTHHHHCTTTTTCSEEECBSSTTCCSSTTCCBHHHHHHTSCGGGCCTTCEEEEEEE
T ss_pred             HHHHHHHHHhhcCCCEEEEEcCCCCchhhhhhhhcCCceeecCCCccccCCCCCCcHHHHHHHHhhhhccccceEEEEEC
Confidence            99999999988899999999999999999999999999999999866  9999999999999999999998999999999


Q ss_pred             cCCcccCCHHhHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEE
Q 015310          246 KPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIR  325 (409)
Q Consensus       246 ~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~  325 (409)
                      +||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||++|++++|++++.|+.+||||||++
T Consensus       242 ~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~ld~~~~~A~~iGAvNti~~  321 (523)
T 2o7s_A          242 KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDEVDPLAKSIGAVNTILR  321 (523)
T ss_dssp             SSCTTCCHHHHHHHHHHHTTCSEEEEEEECSCHHHHHHHTCSTTEEEEEECTTCHHHHHHHCSEECHHHHHHTCCSEEEE
T ss_pred             CCccCCccHHHHHHHHHHcCCCcEEEeEEcchHHHHHHHHhcCCCCEEEECCCCHHHHHHHhcccCHHHHHhCCCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             eCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          326 RPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       326 ~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      +..+|+|+|+||||.||+.+|+..+...+...........+++++++|+|+||+||+++++|.+.|++|+|+||+.++++
T Consensus       322 ~~~~gk~~g~nTD~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~  401 (523)
T 2o7s_A          322 RKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERAL  401 (523)
T ss_dssp             CTTTCCEEEECCHHHHHHHHHHHHC-------------------CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHH
T ss_pred             ecCCCeEEEEcCCHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            62278999999999999999986532100000000001246788999999999999999999999999999999999998


Q ss_pred             hhh
Q 015310          406 LLL  408 (409)
Q Consensus       406 ~la  408 (409)
                      +++
T Consensus       402 ~la  404 (523)
T 2o7s_A          402 ELA  404 (523)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=100.00  E-value=1.6e-61  Score=462.61  Aligned_cols=228  Identities=21%  Similarity=0.351  Sum_probs=207.3

Q ss_pred             CCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHH----HHHHhcC-CCcEEEEeccCCCCCCCCC
Q 015310            8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDL----EIILTKK-PLPVLIVYRPKWAGGLYEG   82 (409)
Q Consensus         8 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l----~~l~~~~-~~PiI~T~R~~~eGG~~~~   82 (409)
                      .++|+|||||++++.+|++++++++...|+|+||||+|+|++..+.+.+    ..+++.. ++|+|||+|+.+|||.+++
T Consensus        17 ~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~   96 (258)
T 4h3d_A           17 EGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLI   96 (258)
T ss_dssp             SSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCC
Confidence            5799999999999999999999999889999999999999987654333    4444443 8999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcC-CcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           83 DEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        83 ~~~~~~~ll~~~~~~g-~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      ++++|.++++.+++.+ +||||||+..+++.+++++ .+++.++|||+|||||++||++++|.+++.+|+++||||+|||
T Consensus        97 ~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~~~~gaDIvKia  176 (258)
T 4h3d_A           97 SRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIA  176 (258)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CHHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence            9999999999999998 9999999999998888887 4678999999999999999999999999999999999999999


Q ss_pred             eecCCHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhcccc
Q 015310          161 FSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN  235 (409)
Q Consensus       161 ~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~i~  235 (409)
                      +||++.+|+++|++++.+     .+.|+|+|+||+.|++||++++.|||++||++++++|||||+++++|+++|++++.+
T Consensus       177 ~~~~~~~D~l~Ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~fGS~lTf~~~~~~sAPGQl~~~el~~~l~lL~~~  256 (258)
T 4h3d_A          177 VMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLHKS  256 (258)
T ss_dssp             ECCSSHHHHHHHHHHHHHHHHHTCSSCBEEEECTGGGGGGGTCHHHHCBCEEECBCC---CTTCCBHHHHHHHHHHHHHT
T ss_pred             EccCCHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChHHHHHHHHhCCceEeccCCCCCCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999754     378999999999999999999999999999999999999999999999999987654

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=3.5e-60  Score=453.03  Aligned_cols=227  Identities=19%  Similarity=0.291  Sum_probs=208.9

Q ss_pred             CCCCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh----hHHHHHHhcC-CCcEEEEeccCCCCCCC
Q 015310            6 ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG----KDLEIILTKK-PLPVLIVYRPKWAGGLY   80 (409)
Q Consensus         6 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~~~eGG~~   80 (409)
                      ...++|+|||||++++.+|++.+++.+...|+|+||||+|+|.+.++.    +++..+++.. ++|+|||+|+.+|||.+
T Consensus        15 ~g~~~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~   94 (257)
T 2yr1_A           15 IGGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIPILFTIRSEREGGQP   94 (257)
T ss_dssp             ESSSSCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCCC
T ss_pred             eCCCCcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccccCcHHHHHHHHHHHHHhccCCCEEEEEeecccCCCC
Confidence            447899999999999999999999998889999999999999876543    3445666666 89999999999999999


Q ss_pred             -CCCHHHHHHHHHHHHHcC-CcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015310           81 -EGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (409)
Q Consensus        81 -~~~~~~~~~ll~~~~~~g-~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDiv  157 (409)
                       +.++++|+++++.++++| +||||||++.++ .+++++ .++++++|||+|||||++||+.++|.+++++|+++||||+
T Consensus        95 ~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~gaDiv  173 (257)
T 2yr1_A           95 IPLNEAEVRRLIEAICRSGAIDLVDYELAYGE-RIADVRRMTEECSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIA  173 (257)
T ss_dssp             CSSCHHHHHHHHHHHHHHTCCSEEEEEGGGTT-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred             CCCCHHHHHHHHHHHHHcCCCCEEEEECCCCh-hHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence             999999999999999999 999999999887 666776 4578999999999999999999999999999999999999


Q ss_pred             EEEeecCCHhHHHHHHHHhccC----CCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhcc
Q 015310          158 KLVFSVNDITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH  233 (409)
Q Consensus       158 Kia~~~~~~~D~~~ll~~~~~~----~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~  233 (409)
                      |||+||++.+|+++|++++.+.    +.|+|+||||+.|++||+++++|||++||++++++|||||+++++++++|++++
T Consensus       174 Kia~~a~s~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~~sAPGQl~~~el~~~l~~l~  253 (257)
T 2yr1_A          174 KVAVMPKSPEDVLVLLQATEEARRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSILQ  253 (257)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHHHHHCSSCEEEEECTTTTHHHHHHGGGGTBCEEECBSSSCSSTTCCBHHHHHHHHHHHH
T ss_pred             EEEeccCCHHHHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHhCCceEecCCCCCCCCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998654    689999999999999999999999999999999999999999999999998764

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=100.00  E-value=2.6e-60  Score=457.66  Aligned_cols=228  Identities=23%  Similarity=0.341  Sum_probs=210.4

Q ss_pred             CCCCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh----hHHHHHHhcC-CCcEEEEeccCCCCCCC
Q 015310            6 ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG----KDLEIILTKK-PLPVLIVYRPKWAGGLY   80 (409)
Q Consensus         6 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~----~~l~~l~~~~-~~PiI~T~R~~~eGG~~   80 (409)
                      .-.++|+|||||++++.+|++.+++++...|+|+||||+|+|++.++.    +++..+|+.. ++|+|||+|+++|||.+
T Consensus        35 ~g~g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~  114 (276)
T 3o1n_A           35 VGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQ  114 (276)
T ss_dssp             ETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCSB
T ss_pred             eCCCCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCC
Confidence            346799999999999999999999998768999999999999987653    3445566655 89999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcC-CcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 015310           81 EGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK  158 (409)
Q Consensus        81 ~~~~~~~~~ll~~~~~~g-~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivK  158 (409)
                      +.++++|+++|+.++++| +||||||+..+++.+++++ .++++++|||+|||||++||+.++|.+++++|+++||||+|
T Consensus       115 ~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~GaDIvK  194 (276)
T 3o1n_A          115 ALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPK  194 (276)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred             CCCHHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999999 9999999999988888887 45789999999999999999999999999999999999999


Q ss_pred             EEeecCCHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhcc
Q 015310          159 LVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH  233 (409)
Q Consensus       159 ia~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~  233 (409)
                      ||+||++.+|+++|++++.+     .++|+|+||||+.|++||+++++|||++||++++++|||||+++++|+++++.++
T Consensus       195 ia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~vTf~~l~~~sAPGQl~~~~l~~~l~~l~  274 (276)
T 3o1n_A          195 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTILH  274 (276)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHHHHTCCSCCEEEECSGGGTHHHHCHHHHTCCEEECBSSCCSSTTCCBHHHHHHHHHHHH
T ss_pred             EEecCCChHHHHHHHHHHHHHHhcCCCCCEEEEECCCchhhHHHHHHHhCCceEecCCCCCCCCCCCCHHHHHHHHHHhc
Confidence            99999999999999999764     4789999999999999999999999999999999999999999999999998764

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=100.00  E-value=4.3e-60  Score=447.98  Aligned_cols=223  Identities=20%  Similarity=0.333  Sum_probs=198.9

Q ss_pred             CCeeEEEeecc-CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---hhHHHHHHhcC-CCcEEEEeccCCCCCCCCCC
Q 015310            9 NTTMICAPLMA-QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIILTKK-PLPVLIVYRPKWAGGLYEGD   83 (409)
Q Consensus         9 ~~~~icv~l~~-~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~---~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~   83 (409)
                      .+|+|||||++ ++.+|++.+++.+.+.|+|+||||+|+|.+.+.   .+++..+++.. ++|+|||+|+.+|||.++.+
T Consensus         2 ~~p~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~   81 (238)
T 1sfl_A            2 THVEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFT   81 (238)
T ss_dssp             -CCEEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCC
T ss_pred             CCCeEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecccccCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCC
Confidence            36899999999 999999999999888899999999999987642   12334455545 79999999999999999999


Q ss_pred             HHHHHHHHHHHHHcC-CcEEEEeccC--ccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           84 EHKRLEALHLAEDLG-ADYVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        84 ~~~~~~ll~~~~~~g-~dyvDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      +++|+++++.+++.+ +||||||++.  +++.+++++ .+|++++|||+|||||++||+.++|.+++++|+++||||+||
T Consensus        82 ~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaDivKi  161 (238)
T 1sfl_A           82 NDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKL  161 (238)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence            999999999999985 9999999999  877777777 456789999999999999999999999999999999999999


Q ss_pred             EeecCCHhHHHHHHHHhcc----CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhh
Q 015310          160 VFSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       160 a~~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~  231 (409)
                      |+||++.+|+++|++++.+    .+.|+|+||||+.|++||+++++|||++||++++++|||||+++++++++|++
T Consensus       162 a~~a~~~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~~sAPGQl~~~el~~~l~~  237 (238)
T 1sfl_A          162 AVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL  237 (238)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCCSSTTCCBHHHHHHHHTT
T ss_pred             EecCCCHHHHHHHHHHHHHHhhcCCCCEEEEECCCCchHHHHHHHHhCCCeeecCCCCCCCCCCCCHHHHHHHHHh
Confidence            9999999999999999865    47899999999999999999999999999999999999999999999999874

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}

Probab=100.00  E-value=1.7e-58  Score=434.81  Aligned_cols=220  Identities=17%  Similarity=0.225  Sum_probs=188.2

Q ss_pred             CCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-C-CCcEEEEeccCCCCCCCCCCHH
Q 015310            8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-K-PLPVLIVYRPKWAGGLYEGDEH   85 (409)
Q Consensus         8 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~-~~PiI~T~R~~~eGG~~~~~~~   85 (409)
                      .|+|+|||||++++.+|++.+++.+. .++|+||||+|+|++.+ .+.+...++. . ++|+|||+|+.+|||.++.+++
T Consensus         1 ~~~~~Icvpi~~~t~~e~~~~~~~~~-~~~D~vElRvD~l~~~~-~~~v~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~   78 (231)
T 2ocz_A            1 SNAMRIVAPVMPRHFDEAQAIDISKY-EDVNLIEWRADFLPKDE-IVAVAPAIFEKFAGKEIIFTLRTVQEGGNITLSSQ   78 (231)
T ss_dssp             --CCEEEEEECCSSHHHHHTCCGGGG-TTCSEEEEEGGGSCGGG-HHHHHHHHHHHTTTSEEEEECCBGGGTCSBCCCHH
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHHHhc-cCCCEEEEEeccccccC-HHHHHHHHHHHcCCCcEEEEEeecccCCCCCCCHH
Confidence            37899999999999999999998864 48999999999998754 3345433322 3 3999999999999999999999


Q ss_pred             HHHHHHHHHHHcC-CcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310           86 KRLEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus        86 ~~~~ll~~~~~~g-~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                      +|+++++.++++| +||||||++.+++.++.   ++. .+|||+|||||++||  ++|.+++++|+++||||+|||+||+
T Consensus        79 ~~~~ll~~~~~~g~~d~iDvEl~~~~~~i~~---~~~-~~kvI~S~Hdf~~tp--~el~~~~~~~~~~gaDivKia~~a~  152 (231)
T 2ocz_A           79 EYVDIIKEINAIYNPDYIDFEYFTHKSVFQE---MLD-FPNLILSYHNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQ  152 (231)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEETTTTGGGGGG---GTT-CSSEEEEEEESSCCC--TTHHHHHHHHHHTCCSEEEEEECCS
T ss_pred             HHHHHHHHHHHcCCCCEEEEECCCCHHHHHH---hhc-CCeEEEEecCCCCCH--HHHHHHHHHHHHcCCCEEEEEeecC
Confidence            9999999999999 99999999998765443   343 499999999999999  8999999999999999999999999


Q ss_pred             CHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhcccc
Q 015310          165 DITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN  235 (409)
Q Consensus       165 ~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~i~  235 (409)
                      +.+|+++|++++.+     .++|+|+|+||+.|++||+++++|||++||+++++++||||++++++++++++++.+
T Consensus       153 ~~~D~l~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~~sAPGQl~~~el~~~l~~l~~~  228 (231)
T 2ocz_A          153 SEQDVLDLMNYTRGFKTLNPEQEFATISMGKLGRLSRFAGDVIGSSWTYVSLDHVSGPGQVTLNDMKRIIEVLEMD  228 (231)
T ss_dssp             SHHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHGGGGGCHHHHTCCEEECBC------CCCBHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCchhHHHHHHHhCCceEeccCCCCCCCCCCCHHHHHHHHHHhhhh
Confidence            99999999999764     367999999999999999999999999999999999999999999999999887655

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans}

Probab=100.00  E-value=5.3e-58  Score=436.87  Aligned_cols=220  Identities=18%  Similarity=0.263  Sum_probs=187.0

Q ss_pred             CCCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHh-cCCCcEEEEeccCCCCCCCCCCHH
Q 015310            7 TKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT-KKPLPVLIVYRPKWAGGLYEGDEH   85 (409)
Q Consensus         7 ~~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~-~~~~PiI~T~R~~~eGG~~~~~~~   85 (409)
                      ..++|+|||||++++.+|++ ++..+...|+|+||||+|+|+..+..+...++++ ..++|+|||+|+++|||.++.+++
T Consensus        31 g~g~pkIcvpl~~~t~~e~~-~~~~~~~~gaD~VElRvD~l~~~~~~~v~~~l~~~~~~~PiI~T~Rt~~EGG~~~~~~~  109 (259)
T 3l9c_A           31 GRGSMKIVVPVMPQNIEEAN-QLDLTRIDSTDIIEWRADYLVKDDILTVAPAIFEKFSGHEVIFTLRTEKEGGNISLSNE  109 (259)
T ss_dssp             ---CCEEEEEECCSSHHHHH-HCCCTTCCTTCEEEEEGGGSCGGGHHHHHHHHHHHTTTSEEEEECCBGGGTCSBCCCHH
T ss_pred             CCCCcEEEEEecCCCHHHHH-HHHHhhccCCCEEEEEeccccchhHHHHHHHHHHhcCCCcEEEEEeehhhCCCCCCCHH
Confidence            35789999999999999997 5555556799999999999985432222334444 358999999999999999999999


Q ss_pred             HHHHHHHHHHH-cCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310           86 KRLEALHLAED-LGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus        86 ~~~~ll~~~~~-~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                      +|+++|+.+++ .++||||||++.+++.+++++    +..|||+|||||++||+  +|.++|++|+++||||+|||+||+
T Consensus       110 ~y~~ll~~~~~~~~~dyIDVEl~~~~~~~~~l~----~~~kiI~S~Hdf~~tp~--el~~~~~~~~~~GaDIvKia~~a~  183 (259)
T 3l9c_A          110 DYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DFSNLILSYHNFEETPE--NLMEVFSELTALAPRVVKIAVMPK  183 (259)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEEHHHHGGGGGGGT----TCSSEEEEEEESSCCCT--THHHHHHHHHHTCCSEEEEEECCS
T ss_pred             HHHHHHHHHHHhcCCCEEEEECcCCHHHHHHHH----hcCeEEEEeccCCCCHH--HHHHHHHHHHHcCCCEEEEEecCC
Confidence            99999999998 789999999999888777664    44599999999999998  899999999999999999999999


Q ss_pred             CHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhcc
Q 015310          165 DITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH  233 (409)
Q Consensus       165 ~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~  233 (409)
                      +.+|+++|++++.+     .+.|+|+|+||+.|++||+++++|||++||++++++|||||+++++|++++++++
T Consensus       184 s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~lTf~~l~~~sAPGQl~~~el~~~l~~l~  257 (259)
T 3l9c_A          184 NEQDVLDLMNYTRGFKTLNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQESAPGQISLADMRKIKEVLD  257 (259)
T ss_dssp             SHHHHHHHHHHHHHHHHHCTTSEEEEEECTGGGHHHHHTHHHHTBSEEECBC-------CCBHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccCCCCEEEEECCCCcccHHHHHHHhCCccccccCCCCCCCCCCCHHHHHHHHHHHc
Confidence            99999999999864     3689999999999999999999999999999999999999999999999998764

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A

Probab=100.00  E-value=4.6e-56  Score=415.24  Aligned_cols=212  Identities=25%  Similarity=0.343  Sum_probs=186.5

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRL   88 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~   88 (409)
                      +|||||++++.+|++++++.   .|+|+||||+|+|++.+..   +++..+++. ++|+|||+|+.+|||.   ++++|+
T Consensus         2 ~icv~l~~~~~~~~~~~~~~---~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~-~~PiI~T~R~~~eGG~---~~~~~~   74 (219)
T 2egz_A            2 LIAVPLDDTNFSENLKKAKE---KGADIVELRVDQFSDTSLNYVKEKLEEVHSQ-GLKTILTIRSPEEGGR---EVKNRE   74 (219)
T ss_dssp             EEEEEECSTTHHHHHHHHHH---HTCSEEEEEGGGCSCCCHHHHHHHHHHHHHT-TCEEEEECCCGGGTCC---CCTTHH
T ss_pred             EEEEEeCCCCHHHHHHHHHH---cCCCEEEEEeccccccCHHHHHHHHHHHHhc-CCcEEEEEeehhccCC---CHHHHH
Confidence            59999999999999887765   3899999999999876542   345555554 7999999999999999   778999


Q ss_pred             HHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015310           89 EALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT  167 (409)
Q Consensus        89 ~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~  167 (409)
                      ++++.++++ +||||||++.+ +..+.+. .++..++|+|+|||||++||+.++|.+++++|+++|| |+|+|+||++.+
T Consensus        75 ~ll~~~~~~-~d~iDvEl~~~-~~~~~l~~~~~~~g~kvI~S~Hdf~~tp~~~el~~~~~~~~~~ga-ivKia~~a~~~~  151 (219)
T 2egz_A           75 ELFEELSPL-SDYTDIELSSR-GLLVKLYNITKEAGKKLIISYHNFELTPPNWIIREVLREGYRYGG-IPKIAVKANSYE  151 (219)
T ss_dssp             HHHHHHTTT-SSEEEEETTCH-HHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTS-EEEEEEECSSHH
T ss_pred             HHHHHHHhc-CCEEEEEccCC-ccHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCC-EEEEEEccCCHH
Confidence            999999999 99999999984 1122333 2455779999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhcc
Q 015310          168 EIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH  233 (409)
Q Consensus       168 D~~~ll~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~  233 (409)
                      |+++|++++.+.+.|+|+||||+.|++||+++++|||++||++++++|||||++++++++++++++
T Consensus       152 D~l~ll~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~~sAPGQl~~~el~~~l~~l~  217 (219)
T 2egz_A          152 DVARLLCISRQVEGEKILISMGDYGKISRLAGYVFGSVITYCSLEKAFAPGQIPLEEMVELRKKFY  217 (219)
T ss_dssp             HHHHHHHHHTTSCSCBEEEEESSGGGGHHHHGGGGTBCEEECBCC---CTTCCBHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCCEEEEECCCcchhHHHHHHHhCCceEecCCCCCCCCCCCCHHHHHHHHHHhc
Confidence            999999999988999999999999999999999999999999999999999999999999998765

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus}

Probab=100.00  E-value=6.9e-54  Score=393.54  Aligned_cols=193  Identities=24%  Similarity=0.331  Sum_probs=178.8

Q ss_pred             EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 015310           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (409)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (409)
                      +|||++++.+| +++++.     +|+||||+|+|++.        ++ ..++|+|||+|+++|||.++.++++|+++++.
T Consensus         2 ~vpl~~~t~~~-~~~~~~-----aD~vElRvD~l~~~--------lr-~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   66 (196)
T 2ox1_A            2 KLVATLSSPEE-LELAEK-----ADVVELRIDLFDFS--------GA-RVDKEKILTCRRVSDGGKFEGDERERIEKMKR   66 (196)
T ss_dssp             EEEEEECSHHH-HHHTTT-----CSEEEEETTTSCCT--------TS-CCCSEEEEECCBGGGTSSBCSCHHHHHHHHHH
T ss_pred             eeeEcCCCHHH-HHHHhc-----CCEEEEEEchhhhh--------HH-hcCCcEEEEEeecccCCCCCCCHHHHHHHHHH
Confidence            79999999999 876653     89999999999864        33 56899999999999999999999999999999


Q ss_pred             HHHcCC-cEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHH
Q 015310           94 AEDLGA-DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARI  172 (409)
Q Consensus        94 ~~~~g~-dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~l  172 (409)
                      ++++|+ ||||||++.+++.+       ++++|+|+|||||++||++++|.++++  +++| ||+|+|+||++.+|+++|
T Consensus        67 ~~~~g~~d~iDvEl~~~~~~i-------~~~~kvI~S~Hdf~~tp~~~~l~~~~~--~~~g-DivKia~~a~~~~D~l~l  136 (196)
T 2ox1_A           67 AFDSLNPDYVDLESDLPDSAF-------DFNCRIIESYHNFIRTPDYSELKGIVE--GRRG-DLVKIATMGKSKRDVETI  136 (196)
T ss_dssp             HHHHHCCSEEEEETTSCGGGC-------CCSSEEEEEEEESSCCCCHHHHHHHHH--TCCS-SEEEEEEECCSHHHHHHH
T ss_pred             HHHhCCCcEEEEECCCCHhHH-------hCCCEEEEEecCCCCCcCHHHHHHHHH--HHcC-CEEEEEEcCCCHHHHHHH
Confidence            999996 99999999887642       278999999999999999999999999  8999 999999999999999999


Q ss_pred             HHHhccCCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhc
Q 015310          173 FQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVE  232 (409)
Q Consensus       173 l~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~  232 (409)
                      ++++.+.+ |+|+||||+.|++||+++++|||++||+++++++||||+++++++++++++
T Consensus       137 l~~~~~~~-p~I~~~MG~~G~~SRi~~~~~gs~~t~~~~~~~sAPGQl~~~el~~~l~~l  195 (196)
T 2ox1_A          137 VRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIYCYVGSPKAPGQISLDDAREIISRL  195 (196)
T ss_dssp             HHHHHHCS-SEEEEEESGGGTHHHHHHHHTTCSEEEEESSSCSSTTCCBHHHHHHHHHHH
T ss_pred             HHHHhhCC-CeEEEEcCCCchhHHHhHhhhCCceEeccCCCCCCCCCCCHHHHHHHHHHh
Confidence            99998776 999999999999999999999999999999999999999999999999764

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=100.00  E-value=2.6e-46  Score=366.46  Aligned_cols=162  Identities=30%  Similarity=0.526  Sum_probs=149.2

Q ss_pred             ccccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhh
Q 015310          232 EHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE  309 (409)
Q Consensus       232 ~~i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~  309 (409)
                      ..++..|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|+|+|||||||++|++++|+
T Consensus        25 ~~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~  104 (312)
T 3t4e_A           25 MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDE  104 (312)
T ss_dssp             -----CCEEEEEEESCCTTCSHHHHHHHHHHHHTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSHHHHGGGCSE
T ss_pred             cccCCCceEEEEECCCccccccHHHHHHHHHHcCCCcEEEeEecCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHhhh
Confidence            34667789999999999999999999999999999999999998  5899999999989999999999999999999999


Q ss_pred             hcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHh
Q 015310          310 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS  389 (409)
Q Consensus       310 ~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~  389 (409)
                      +|+.|+.+||||||+++  +|+|+||||||.||+++|++.             +.++++++++|+||||+||+++++|.+
T Consensus       105 ls~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-------------~~~l~gk~~lVlGAGGaaraia~~L~~  169 (312)
T 3t4e_A          105 LTPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-------------GFDMRGKTMVLLGAGGAATAIGAQAAI  169 (312)
T ss_dssp             ECHHHHHHTCCSEEEEE--TTEEEEECHHHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHHHHHHHHH
T ss_pred             cCHHHHHhCceeEEEec--CCEEEEeCCcHHHHHHHHHhc-------------CCCcCCCEEEEECcCHHHHHHHHHHHH
Confidence            99999999999999987  999999999999999998753             256789999999999999999999999


Q ss_pred             CCC-eEEEEeCC---hHHHHhhh
Q 015310          390 RGA-RVVIFDID---FEQSLLLL  408 (409)
Q Consensus       390 ~G~-~i~v~nR~---~~ka~~la  408 (409)
                      +|+ +|+|+||+   .+|+++|+
T Consensus       170 ~G~~~v~v~nRt~~~~~~a~~la  192 (312)
T 3t4e_A          170 EGIKEIKLFNRKDDFFEKAVAFA  192 (312)
T ss_dssp             TTCSEEEEEECSSTHHHHHHHHH
T ss_pred             cCCCEEEEEECCCchHHHHHHHH
Confidence            999 89999999   99999875

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=6.6e-46  Score=358.70  Aligned_cols=160  Identities=29%  Similarity=0.399  Sum_probs=149.9

Q ss_pred             cccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcH
Q 015310          235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (409)
Q Consensus       235 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~  312 (409)
                      +.+|++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||||||+++++++|++|+
T Consensus         2 s~~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~v~~l~~~~~~G~nVTiP~K~~v~~~ld~ls~   81 (282)
T 3fbt_A            2 SLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCGGLNVTIPYKVEVMKELYEISE   81 (282)
T ss_dssp             -CCCEEEEEEESSCCCCHHHHHHHHHHHHHTCCEEEEEEECCGGGHHHHHHHHHHTTCCEEEECTTCTTGGGGGCSEECH
T ss_pred             CCcceEEEEECCCccccchHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhcCH
Confidence            45789999999999999999999999999999999999998  5899999998889999999999999999999999999


Q ss_pred             HHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC
Q 015310          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (409)
Q Consensus       313 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~  392 (409)
                      .|+.+||||||+++  +|+|+||||||.||+++|++.             +.++++++++|+|+||+||+++++|.++|+
T Consensus        82 ~A~~iGAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~-------------~~~~~~k~vlvlGaGGaaraia~~L~~~G~  146 (282)
T 3fbt_A           82 KARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSKF-------------RVEIKNNICVVLGSGGAARAVLQYLKDNFA  146 (282)
T ss_dssp             HHHHHTCCCEEEEC--SSCEEEECCHHHHHHHHHHHT-------------TCCCTTSEEEEECSSTTHHHHHHHHHHTTC
T ss_pred             HHHHcCCcceEEee--CCEEEeeCCcHHHHHHHHHHc-------------CCCccCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            99999999999987  899999999999999998753             246789999999999999999999999999


Q ss_pred             -eEEEEeCChHHHHhhhC
Q 015310          393 -RVVIFDIDFEQSLLLLM  409 (409)
Q Consensus       393 -~i~v~nR~~~ka~~la~  409 (409)
                       +|+|+|||.+|+++|+.
T Consensus       147 ~~v~v~nRt~~ka~~La~  164 (282)
T 3fbt_A          147 KDIYVVTRNPEKTSEIYG  164 (282)
T ss_dssp             SEEEEEESCHHHHHHHCT
T ss_pred             CEEEEEeCCHHHHHHHHH
Confidence             99999999999999863

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=100.00  E-value=1.4e-45  Score=356.78  Aligned_cols=160  Identities=26%  Similarity=0.417  Sum_probs=147.5

Q ss_pred             cccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcH
Q 015310          235 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (409)
Q Consensus       235 ~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~  312 (409)
                      ..+|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|+|+|||||||+++++++|++|+
T Consensus         5 ~~~m~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~ld~l~~   84 (281)
T 3o8q_A            5 ASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTE   84 (281)
T ss_dssp             ---CEEEEEECCSSSCCCHHHHHHHHHHHTTCCEEEEEECCCTTCHHHHHHHHHHTTCCEEEECTTSHHHHHHHCSEECH
T ss_pred             cccccEEEEECCCCCccCcHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECCccHHHHHHHHhhcCH
Confidence            44578999999999999999999999999999999999998  5899999999888999999999999999999999999


Q ss_pred             HHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC
Q 015310          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (409)
Q Consensus       313 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~  392 (409)
                      .|+.+||||||++.+ +|+|+||||||.||+++|++.             +.++++++++|+|+||+||+++++|.+.|+
T Consensus        85 ~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~L~~~-------------~~~l~~k~vlvlGaGg~g~aia~~L~~~G~  150 (281)
T 3o8q_A           85 RARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLAQ-------------QVLLKGATILLIGAGGAARGVLKPLLDQQP  150 (281)
T ss_dssp             HHHHHTCCSEEEECT-TSCEEEECCHHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHHHHHHHHTTCC
T ss_pred             HHHhhCeeeEEEEcC-CCcEEEEecHHHHHHHHHHHh-------------CCCccCCEEEEECchHHHHHHHHHHHhcCC
Confidence            999999999999752 899999999999999998642             256789999999999999999999999998


Q ss_pred             -eEEEEeCChHHHHhhh
Q 015310          393 -RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       393 -~i~v~nR~~~ka~~la  408 (409)
                       +|+|+||+.+++++|+
T Consensus       151 ~~v~v~~R~~~~a~~la  167 (281)
T 3o8q_A          151 ASITVTNRTFAKAEQLA  167 (281)
T ss_dssp             SEEEEEESSHHHHHHHH
T ss_pred             CeEEEEECCHHHHHHHH
Confidence             9999999999999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=100.00  E-value=1.4e-45  Score=357.38  Aligned_cols=158  Identities=28%  Similarity=0.434  Sum_probs=147.8

Q ss_pred             cceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecC-------cccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhh
Q 015310          237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMF-------VDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE  309 (409)
Q Consensus       237 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~-------~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~  309 (409)
                      +|++|||||+||+||+||.|||++|+++|+|+.|.+++       .++++++++.++.++|+|+|||||||+++++++|+
T Consensus         3 ~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~   82 (283)
T 3jyo_A            3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_dssp             CCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEETTSTTTTTCCHHHHHHHHHHTTCCEEEECTTCTTTTGGGSSE
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHcCCCeEEEEEEccccCCCHHHHHHHHHHHhhCCCCEEEECcccHHHHHHHhhh
Confidence            57899999999999999999999999999999999994       36899999999889999999999999999999999


Q ss_pred             hcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHh
Q 015310          310 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS  389 (409)
Q Consensus       310 ~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~  389 (409)
                      +|+.|+.+||||||++++ +|+|+||||||.||+++|++..             .++++++++|+|+||+||+++++|.+
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~~-------------~~l~~k~vlVlGaGG~g~aia~~L~~  148 (283)
T 3jyo_A           83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEGL-------------PNAKLDSVVQVGAGGVGNAVAYALVT  148 (283)
T ss_dssp             ECHHHHHHTCCCEEEECT-TSCEEEECHHHHHHHHHHHHHC-------------TTCCCSEEEEECCSHHHHHHHHHHHH
T ss_pred             CCHHHHHhCcceEEEECC-CCeEEEecCCHHHHHHHHHHhC-------------cCcCCCEEEEECCcHHHHHHHHHHHH
Confidence            999999999999999873 8899999999999999997641             45789999999999999999999999


Q ss_pred             CCC-eEEEEeCChHHHHhhh
Q 015310          390 RGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       390 ~G~-~i~v~nR~~~ka~~la  408 (409)
                      .|+ +|+|+||+.+|+++|+
T Consensus       149 ~G~~~v~i~~R~~~~a~~la  168 (283)
T 3jyo_A          149 HGVQKLQVADLDTSRAQALA  168 (283)
T ss_dssp             TTCSEEEEECSSHHHHHHHH
T ss_pred             CCCCEEEEEECCHHHHHHHH
Confidence            999 8999999999999875

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=100.00  E-value=2.9e-45  Score=353.08  Aligned_cols=155  Identities=26%  Similarity=0.391  Sum_probs=145.6

Q ss_pred             eEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHH
Q 015310          239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  316 (409)
Q Consensus       239 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~  316 (409)
                      .+|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|+|+|||||||+++++++|++|+.|+.
T Consensus         3 ~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~   82 (272)
T 3pwz_A            3 DRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNITAPFKLRAFELADRRSERAQL   82 (272)
T ss_dssp             EEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcCCcccHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHHhhCCHHHHH
Confidence            4799999999999999999999999999999999987  58999999998899999999999999999999999999999


Q ss_pred             hccceEEEEeCCCCeEEEEcCcHHHHHHH-HHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eE
Q 015310          317 IAAVNTIIRRPSDGKLIGYNTDCEASITA-IEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RV  394 (409)
Q Consensus       317 igAvNti~~~~~~g~l~G~NTD~~G~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i  394 (409)
                      +||||||+++  +|+|+||||||.||+++ |++.             +.++++|+++|+|+||+||+++++|.+.|+ +|
T Consensus        83 iGAvNTv~~~--~g~l~G~NTD~~G~~~~lL~~~-------------~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v  147 (272)
T 3pwz_A           83 ARAANALKFE--DGRIVAENFDGIGLLRDIEENL-------------GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSEL  147 (272)
T ss_dssp             HTCCSEEEEE--TTEEEEECCHHHHHHHHHHTTS-------------CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEE
T ss_pred             hCccceEEcc--CCeEEEecCCHHHHHHHHHHHc-------------CCCccCCEEEEECccHHHHHHHHHHHHcCCCEE
Confidence            9999999887  89999999999999999 7431             256789999999999999999999999998 99


Q ss_pred             EEEeCChHHHHhhh
Q 015310          395 VIFDIDFEQSLLLL  408 (409)
Q Consensus       395 ~v~nR~~~ka~~la  408 (409)
                      +|+||+.+|+++|+
T Consensus       148 ~i~~R~~~~a~~la  161 (272)
T 3pwz_A          148 VIANRDMAKALALR  161 (272)
T ss_dssp             EEECSCHHHHHHHH
T ss_pred             EEEeCCHHHHHHHH
Confidence            99999999999885

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=100.00  E-value=5.4e-46  Score=356.66  Aligned_cols=153  Identities=28%  Similarity=0.534  Sum_probs=144.5

Q ss_pred             cceEEeeeccCCcccCCHHhHHHHH----HhcCCCceEeecCcccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcH
Q 015310          237 DTKVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (409)
Q Consensus       237 ~~~~~~viG~pi~hS~SP~ihn~~f----~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~  312 (409)
                      +|++|||||+||+||+||.|||++|    +++|+|+.|.++++++++++++.++.++|+|+|||||||+++++++|++|+
T Consensus         2 k~~~~~viG~Pi~hS~SP~~hn~~f~~~~~~~gl~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~   81 (269)
T 3phh_A            2 KLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIKG   81 (269)
T ss_dssp             CEEEEEEEESSCTTCCHHHHHHHHHHHHHHHHSSEEEEEEEECCSSSCHHHHHHHTTEEEEEECTTCHHHHHHHSSEECG
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHHHHHcCCCCEEeeEEhhhHHHHHHHHhhCCCCEEEEccccHHHHHHHHhhcCH
Confidence            4789999999999999999999999    999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC
Q 015310          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (409)
Q Consensus       313 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~  392 (409)
                      .|+.+||||||+++  +|+|+||||||.||+++|++.                 .+++++|+|+||+||+++++|.+.|.
T Consensus        82 ~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-----------------~~k~vlvlGaGGaaraia~~L~~~G~  142 (269)
T 3phh_A           82 IALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQK-----------------NYQNALILGAGGSAKALACELKKQGL  142 (269)
T ss_dssp             GGGGTTCCCEEEEE--TTEEEEECCHHHHHHHHCC--------------------CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             HHHHhCceeEEEee--CCEEEEecChHHHHHHHHHHc-----------------CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            99999999999987  999999999999999997531                 17899999999999999999999999


Q ss_pred             eEEEEeCChHHHHhhh
Q 015310          393 RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       393 ~i~v~nR~~~ka~~la  408 (409)
                      +|+|+||+.+|+++|+
T Consensus       143 ~v~V~nRt~~ka~~la  158 (269)
T 3phh_A          143 QVSVLNRSSRGLDFFQ  158 (269)
T ss_dssp             EEEEECSSCTTHHHHH
T ss_pred             EEEEEeCCHHHHHHHH
Confidence            9999999999999875

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=100.00  E-value=4.7e-45  Score=357.94  Aligned_cols=161  Identities=30%  Similarity=0.584  Sum_probs=151.2

Q ss_pred             cccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhh
Q 015310          233 HINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEV  310 (409)
Q Consensus       233 ~i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~  310 (409)
                      .++.+|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|+|+|||||||+++++++|++
T Consensus        32 ~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~l  111 (315)
T 3tnl_A           32 RITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKL  111 (315)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHHHHTTCCEEEECTTSTTTGGGGCSEE
T ss_pred             hcCCcccEEEEECCCccccccHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHhc
Confidence            3567789999999999999999999999999999999999988  48999999998899999999999999999999999


Q ss_pred             cHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhC
Q 015310          311 HPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSR  390 (409)
Q Consensus       311 ~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~  390 (409)
                      |+.|+.+||||||+++  +|+|+||||||.||+++|++.             +.++++|+++|+|+||+||+++++|.++
T Consensus       112 s~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-------------~~~l~gk~~lVlGaGG~g~aia~~L~~~  176 (315)
T 3tnl_A          112 SPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA-------------GHDIIGKKMTICGAGGAATAICIQAALD  176 (315)
T ss_dssp             CHHHHHHTCCSEEEEE--TTEEEEECCHHHHHHHHHHHT-------------TCCCTTSEEEEECCSHHHHHHHHHHHHT
T ss_pred             CHHHHHhCccceEEec--CCEEEEeCCCHHHHHHHHHHc-------------CCCccCCEEEEECCChHHHHHHHHHHHC
Confidence            9999999999999987  999999999999999998752             2567899999999999999999999999


Q ss_pred             CC-eEEEEeCC---hHHHHhhh
Q 015310          391 GA-RVVIFDID---FEQSLLLL  408 (409)
Q Consensus       391 G~-~i~v~nR~---~~ka~~la  408 (409)
                      |+ +|+|+||+   .+++++|+
T Consensus       177 Ga~~V~i~nR~~~~~~~a~~la  198 (315)
T 3tnl_A          177 GVKEISIFNRKDDFYANAEKTV  198 (315)
T ss_dssp             TCSEEEEEECSSTTHHHHHHHH
T ss_pred             CCCEEEEEECCCchHHHHHHHH
Confidence            99 99999999   99999875

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=100.00  E-value=1.8e-45  Score=355.10  Aligned_cols=154  Identities=25%  Similarity=0.471  Sum_probs=145.6

Q ss_pred             EEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHh
Q 015310          240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAI  317 (409)
Q Consensus       240 ~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~i  317 (409)
                      +|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|+|+|||||||+++++++|++|+.|+.+
T Consensus         2 ~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~i   81 (277)
T 3don_A            2 KFAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIPHKERIIPYLDDINEQAKSV   81 (277)
T ss_dssp             EEEEEESSCTTCCHHHHHHHHHHHTTCCCEEEEEECCGGGGGGHHHHHHHTTCSEEEECTTCTTTTGGGCSEECHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECcCCHHHHHHHhhhCCHHHHHh
Confidence            499999999999999999999999999999999998  589999999988999999999999999999999999999999


Q ss_pred             ccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEE
Q 015310          318 AAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVI  396 (409)
Q Consensus       318 gAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v  396 (409)
                      ||||||+++  +|+|+||||||.||+++|++.             +.++++++++|+|+||+||+++++|.+.|+ +|+|
T Consensus        82 GAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~-------------~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v  146 (277)
T 3don_A           82 GAVNTVLVK--DGKWIGYNTDGIGYVNGLKQI-------------YEGIEDAYILILGAGGASKGIANELYKIVRPTLTV  146 (277)
T ss_dssp             TCCCEEEEE--TTEEEEECCHHHHHHHHHHHH-------------STTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEE
T ss_pred             CceeEEEec--CCEEEEECChHHHHHHHHHHh-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            999999998  999999999999999999763             145778999999999999999999999999 9999


Q ss_pred             EeCChHHHHhhh
Q 015310          397 FDIDFEQSLLLL  408 (409)
Q Consensus       397 ~nR~~~ka~~la  408 (409)
                      +||+.+|+++|+
T Consensus       147 ~~R~~~~a~~la  158 (277)
T 3don_A          147 ANRTMSRFNNWS  158 (277)
T ss_dssp             ECSCGGGGTTCC
T ss_pred             EeCCHHHHHHHH
Confidence            999999998875

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=100.00  E-value=3.9e-43  Score=338.49  Aligned_cols=156  Identities=21%  Similarity=0.340  Sum_probs=146.3

Q ss_pred             eEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHH
Q 015310          239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  316 (409)
Q Consensus       239 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~  316 (409)
                      ++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.+++++|.|+|||||||+++++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~~~~~~l~~~i~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~   81 (272)
T 1p77_A            2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKL   81 (272)
T ss_dssp             EEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcccccCHHHHHHHHHHCCcCeEEEEEEcCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHHhhcCHHHHH
Confidence            6899999999999999999999999999999999998  68999999998899999999999999999999999999999


Q ss_pred             hccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEE
Q 015310          317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  396 (409)
Q Consensus       317 igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v  396 (409)
                      +||||||++.. +|+|+||||||.||+.+|++.             +.++++++++|+|+||+||+++++|.+.|.+|+|
T Consensus        82 igavNti~~~~-~g~l~g~NTD~~G~~~~L~~~-------------~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v  147 (272)
T 1p77_A           82 AEACNTLKKLD-DGKLYADNTDGIGLVTDLQRL-------------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVL  147 (272)
T ss_dssp             HTCCSEEEECT-TSCEEEECCHHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEE
T ss_pred             hCCceEEEEcc-CCEEEEecCCHHHHHHHHHHh-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            99999999842 899999999999999998752             1457789999999999999999999999999999


Q ss_pred             EeCChHHHHhhh
Q 015310          397 FDIDFEQSLLLL  408 (409)
Q Consensus       397 ~nR~~~ka~~la  408 (409)
                      +||+.+|+++|+
T Consensus       148 ~~R~~~~a~~l~  159 (272)
T 1p77_A          148 ANRTFSKTKELA  159 (272)
T ss_dssp             EESSHHHHHHHH
T ss_pred             EECCHHHHHHHH
Confidence            999999998875

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=1.9e-43  Score=340.38  Aligned_cols=157  Identities=31%  Similarity=0.500  Sum_probs=146.5

Q ss_pred             ccccceE-EeeeccCCcccCCHHhHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcH
Q 015310          234 INADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (409)
Q Consensus       234 i~~~~~~-~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~  312 (409)
                      ++..|++ |||||+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++++|++++
T Consensus         2 i~~~t~~~~~viG~P--hS~SP~~hn~~~~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~~d~~~~   79 (271)
T 1npy_A            2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHP   79 (271)
T ss_dssp             CCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEECH
T ss_pred             cCCCceEEEEEECCC--CcccHHHHHHHHHHcCCCcEEEeechhhHHHHHHHhccCCCCeEEECcCCHHHHHHHHHHhhH
Confidence            4567888 9999999  999999999999999999999999988999999999888999999999999999999999999


Q ss_pred             HHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC
Q 015310          313 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  392 (409)
Q Consensus       313 ~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~  392 (409)
                      .|+.+||||||+++  +|+|+||||||.||..+|++.    +         .. .+++++|||+||+||+++++|.++|+
T Consensus        80 ~A~~iGAvNTi~~~--~g~l~g~NTD~~G~~~~l~~~----~---------~~-~~~~vlvlGaGgaarav~~~L~~~G~  143 (271)
T 1npy_A           80 SAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKY----H---------LN-KNAKVIVHGSGGMAKAVVAAFKNSGF  143 (271)
T ss_dssp             HHHTTTCCCEEEEE--TTEEEEECHHHHHHHHHHHHT----T---------CC-TTSCEEEECSSTTHHHHHHHHHHTTC
T ss_pred             HHHHhCCCCceECc--CCEEEeecCCHHHHHHHHHHh----C---------CC-CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            99999999999987  999999999999999998652    1         22 46899999999999999999999999


Q ss_pred             -eEEEEeCChHHHHhhh
Q 015310          393 -RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       393 -~i~v~nR~~~ka~~la  408 (409)
                       +|+|+|||.+|+++|+
T Consensus       144 ~~i~v~nRt~~ka~~la  160 (271)
T 1npy_A          144 EKLKIYARNVKTGQYLA  160 (271)
T ss_dssp             CCEEEECSCHHHHHHHH
T ss_pred             CEEEEEeCCHHHHHHHH
Confidence             8999999999999886

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=100.00  E-value=6.2e-43  Score=333.56  Aligned_cols=145  Identities=30%  Similarity=0.455  Sum_probs=136.2

Q ss_pred             EEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHHh
Q 015310          240 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAI  317 (409)
Q Consensus       240 ~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~i  317 (409)
                      +|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++ ++|+|+|||||||+++++++|+ |+.|+.+
T Consensus         2 ~~~viG~pi~hS~SP~~hn~~~~~~gl~~~Y~~~~v~~~~l~~~~~~~~-~~~~G~nVT~P~K~~v~~~~d~-~~~A~~i   79 (253)
T 3u62_A            2 KFCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRIL-EEYDGFNATIPHKERVMRYVEP-SEDAQRI   79 (253)
T ss_dssp             EEEEEESSCTTCSHHHHHHHHHHHHTCCCEEEEEECCGGGHHHHHHHHH-HHCSEEEECTTCTTGGGGGSEE-CHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCCCCEEEeEecCHHHHHHHHHHHh-hCCCceeecCChHHHHHHHhCC-CHHHHHc
Confidence            599999999999999999999999999999999998  58999999999 9999999999999999999999 9999999


Q ss_pred             ccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEE
Q 015310          318 AAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVI  396 (409)
Q Consensus       318 gAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v  396 (409)
                      ||||||++   +   +||||||.||+++|++.               .+++ +++|+|+||+||+++++|.+.|+ +|+|
T Consensus        80 GAvNTi~~---~---~G~NTD~~G~~~~l~~~---------------~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v  137 (253)
T 3u62_A           80 KAVNCVFR---G---KGYNTDWVGVVKSLEGV---------------EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWV  137 (253)
T ss_dssp             TCCCEEET---T---EEECCHHHHHHHHTTTC---------------CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CcceEeec---C---EEEcchHHHHHHHHHhc---------------CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEE
Confidence            99999985   3   99999999999997531               3567 89999999999999999999999 9999


Q ss_pred             EeCChHHHHhhh
Q 015310          397 FDIDFEQSLLLL  408 (409)
Q Consensus       397 ~nR~~~ka~~la  408 (409)
                      +||+.+|+++|+
T Consensus       138 ~nR~~~ka~~la  149 (253)
T 3u62_A          138 VNRTIERAKALD  149 (253)
T ss_dssp             EESCHHHHHTCC
T ss_pred             EeCCHHHHHHHH
Confidence            999999999886

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=5.5e-42  Score=330.20  Aligned_cols=156  Identities=28%  Similarity=0.415  Sum_probs=146.0

Q ss_pred             eEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHHH
Q 015310          239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  316 (409)
Q Consensus       239 ~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~  316 (409)
                      ++|||||+||+||+||.|||++|+++|+++.|.++++  +++.++++.+++++|.|+|||||||+++++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVT~P~K~~~~~~ld~~~~~A~~   81 (271)
T 1nyt_A            2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAAL   81 (271)
T ss_dssp             CSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             CEEEEECCCcccccCHHHHHHHHHHCCCCcEEEEEEcCHHHHHHHHHHHHhCCCCeEEEccCCHHHHHHHHhhcCHHHHH
Confidence            5799999999999999999999999999999999998  68999999998899999999999999999999999999999


Q ss_pred             hccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEE
Q 015310          317 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  396 (409)
Q Consensus       317 igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v  396 (409)
                      +||||||++.. +|+|+||||||.||+.+|++.             +.++++++++|+|+||+||+++++|.+.|++|+|
T Consensus        82 igavNti~~~~-~g~l~G~ntD~~G~~~~L~~~-------------~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v  147 (271)
T 1nyt_A           82 AGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERL-------------SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTI  147 (271)
T ss_dssp             HTCCSEEEECT-TSCEEEECCHHHHHHHHHHHH-------------TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             hCCceEEEEcC-CCeEEEeCCCHHHHHHHHHhc-------------CcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence            99999999832 899999999999999999763             1457789999999999999999999999999999


Q ss_pred             EeCChHHHHhhh
Q 015310          397 FDIDFEQSLLLL  408 (409)
Q Consensus       397 ~nR~~~ka~~la  408 (409)
                      +||+.+++++++
T Consensus       148 ~~R~~~~~~~la  159 (271)
T 1nyt_A          148 TNRTVSRAEELA  159 (271)
T ss_dssp             ECSSHHHHHHHH
T ss_pred             EECCHHHHHHHH
Confidence            999999998875

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=100.00  E-value=6.6e-41  Score=326.88  Aligned_cols=167  Identities=34%  Similarity=0.510  Sum_probs=150.1

Q ss_pred             hhhhccccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHh
Q 015310          228 TYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMK  305 (409)
Q Consensus       228 ~~~~~~i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~  305 (409)
                      -|++..++..+++|||||+|++||+||.|||++|+++|+|+.|.++++  ++++++++.+++.+|.|+|||||||++|++
T Consensus        13 ~~~~~~~~~~t~~~~viG~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~~~~~~~l~~~v~~l~~~~~~G~nVTiP~K~~i~~   92 (297)
T 2egg_A           13 GENLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVTIPHKLAVIP   92 (297)
T ss_dssp             -------CCCCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTCHHHHHHHHHHHTCCEEEECTTCTTTTGG
T ss_pred             cccceecCCceeEEEEECCCcccccCHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCeEEECCcCHHHHHH
Confidence            366777888899999999999999999999999999999999999998  589999999988899999999999999999


Q ss_pred             hhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHH
Q 015310          306 FCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAF  385 (409)
Q Consensus       306 ~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~  385 (409)
                      ++|++++.|+.+||||||+++  +|+|+|+||||.||..+|++..            ..++++++++|+|+||+||++++
T Consensus        93 ~ld~~~~~A~~iGavNti~~~--~g~l~g~nTd~~G~~~~l~~~~------------~~~l~~~~vlVlGaGg~g~aia~  158 (297)
T 2egg_A           93 FLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEEM------------NITLDGKRILVIGAGGGARGIYF  158 (297)
T ss_dssp             GCSEECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHT------------TCCCTTCEEEEECCSHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCCeEECc--CCeEeeccCCHHHHHHHHHHhC------------CCCCCCCEEEEECcHHHHHHHHH
Confidence            999999999999999999987  8999999999999999997531            03567899999999999999999


Q ss_pred             HHHhCCC-eEEEEeCChHHHHhhh
Q 015310          386 GAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       386 aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      +|.+.|+ +|+|+||+.+|+++|+
T Consensus       159 ~L~~~G~~~V~v~nR~~~ka~~la  182 (297)
T 2egg_A          159 SLLSTAAERIDMANRTVEKAERLV  182 (297)
T ss_dssp             HHHTTTCSEEEEECSSHHHHHHHH
T ss_pred             HHHHCCCCEEEEEeCCHHHHHHHH
Confidence            9999999 9999999999998875

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=1.7e-39  Score=315.19  Aligned_cols=159  Identities=41%  Similarity=0.590  Sum_probs=148.5

Q ss_pred             ccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhc
Q 015310          234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  311 (409)
Q Consensus       234 i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~  311 (409)
                      ++..+++|||||+||+||+||.|||++|+++|+++.|.++++  +++.++++.++.++|.|+|||||||++|++++|+++
T Consensus         7 ~~~~~~~~~viG~pi~hS~Sp~~h~~~~~~~gi~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVtiP~k~~i~~~~d~~~   86 (287)
T 1nvt_A            7 INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEID   86 (287)
T ss_dssp             CCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEEC
T ss_pred             hcCCccEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHHhCCCCEEEEccCCHHHHHHHHHhcC
Confidence            455688999999999999999999999999999999999998  689999999987899999999999999999999999


Q ss_pred             HHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCC
Q 015310          312 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  391 (409)
Q Consensus       312 ~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G  391 (409)
                      +.|+.+|||||++++  +|+|+|+|||+.||+.+|++. .            .++++++++|+|+||+|++++++|.+.|
T Consensus        87 ~~a~~igavnt~~~~--~g~l~g~nTd~~G~~~~L~~~-~------------~~l~~k~vlV~GaGgiG~aia~~L~~~G  151 (287)
T 1nvt_A           87 KDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEE-I------------GRVKDKNIVIYGAGGAARAVAFELAKDN  151 (287)
T ss_dssp             HHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHH-H------------CCCCSCEEEEECCSHHHHHHHHHHTSSS
T ss_pred             HHHHHhCceeeEEee--CCEEEEecCCHHHHHHHHHHh-C------------CCcCCCEEEEECchHHHHHHHHHHHHCC
Confidence            999999999999987  899999999999999999763 1            4578899999999999999999999999


Q ss_pred             CeEEEEeCChHHHHhhh
Q 015310          392 ARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       392 ~~i~v~nR~~~ka~~la  408 (409)
                       +|+|+||+.+++++++
T Consensus       152 -~V~v~~r~~~~~~~l~  167 (287)
T 1nvt_A          152 -NIIIANRTVEKAEALA  167 (287)
T ss_dssp             -EEEEECSSHHHHHHHH
T ss_pred             -CEEEEECCHHHHHHHH
Confidence             9999999999988774

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=100.00  E-value=2.5e-38  Score=305.28  Aligned_cols=161  Identities=32%  Similarity=0.558  Sum_probs=150.0

Q ss_pred             cccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhh
Q 015310          233 HINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEV  310 (409)
Q Consensus       233 ~i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~  310 (409)
                      .++.+|++|||+|+|++||+||.|||++|+++|+++.|.++++  +++.++++.++.++|.|+|||||||+++++++|++
T Consensus         7 ~~~~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nvtiP~k~~i~~~ld~l   86 (275)
T 2hk9_A            7 MINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYV   86 (275)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEEEEEEECCGGGHHHHHHHHHHHTCCEEEECTTSTTTTGGGCSEE
T ss_pred             cccCCceEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHHHh
Confidence            4567789999999999999999999999999999999999987  58999999998889999999999999999999999


Q ss_pred             cHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhC
Q 015310          311 HPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSR  390 (409)
Q Consensus       311 ~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~  390 (409)
                      ++.|+.+||||||+++  +|++.|+|||+.||+.+|++.             +.++++++++|+|+|++|++++++|.+.
T Consensus        87 ~~~A~~~gavnti~~~--~g~~~g~nTd~~G~~~~l~~~-------------~~~~~~~~v~iiGaG~~g~aia~~L~~~  151 (275)
T 2hk9_A           87 EDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSLKSL-------------IPEVKEKSILVLGAGGASRAVIYALVKE  151 (275)
T ss_dssp             CHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHH-------------CTTGGGSEEEEECCSHHHHHHHHHHHHH
T ss_pred             hHHHHHhCCcceEEee--CCEEEeecCCHHHHHHHHHHh-------------CCCcCCCEEEEECchHHHHHHHHHHHHc
Confidence            9999999999999987  899999999999999998753             1456789999999999999999999999


Q ss_pred             CCeEEEEeCChHHHHhhh
Q 015310          391 GARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       391 G~~i~v~nR~~~ka~~la  408 (409)
                      |++|+++||+.+++++++
T Consensus       152 g~~V~v~~r~~~~~~~l~  169 (275)
T 2hk9_A          152 GAKVFLWNRTKEKAIKLA  169 (275)
T ss_dssp             TCEEEEECSSHHHHHHHT
T ss_pred             CCEEEEEECCHHHHHHHH
Confidence            999999999999998875

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=100.00  E-value=6.9e-35  Score=279.12  Aligned_cols=154  Identities=33%  Similarity=0.560  Sum_probs=142.4

Q ss_pred             ceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHH
Q 015310          238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ  315 (409)
Q Consensus       238 ~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~  315 (409)
                      +++|||||+||+||+||.|||++|+++|+++.|.++++  +++.++++.++.. +.|+|||+|||+++++++|++++.|+
T Consensus         1 ~~~~~~~G~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~-~~G~~vt~P~k~~i~~~~~~l~~~a~   79 (263)
T 2d5c_A            1 MLRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLTLPLKEAALAHLDWVSPEAQ   79 (263)
T ss_dssp             CEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGHHHHHHHHHHH-CSEEEECTTCTTGGGGGCSEECHHHH
T ss_pred             CeEEEEECCCcccccCHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHhcccc-CceEEEcccCHHHHHHHHHHHhHHHH
Confidence            46899999999999999999999999999999999977  5789999888766 99999999999999999999999999


Q ss_pred             HhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE
Q 015310          316 AIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV  395 (409)
Q Consensus       316 ~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~  395 (409)
                      .+|++||++++  +|++.|+|||+.|++.+|++.             +.++++ +++|+|+|++|++++..|.+.|++|+
T Consensus        80 ~~gavn~i~~~--~g~~~g~ntd~~g~~~~l~~~-------------~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~  143 (263)
T 2d5c_A           80 RIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAG-------------GIPLKG-PALVLGAGGAGRAVAFALREAGLEVW  143 (263)
T ss_dssp             HHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHT-------------TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred             HhCCCCcEEcc--CCeEEEeCCCHHHHHHHHHHh-------------CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEE
Confidence            99999999986  899999999999999998653             145788 99999999999999999999999999


Q ss_pred             EEeCChHHHHhhh
Q 015310          396 IFDIDFEQSLLLL  408 (409)
Q Consensus       396 v~nR~~~ka~~la  408 (409)
                      ++||+.+++++++
T Consensus       144 v~~r~~~~~~~l~  156 (263)
T 2d5c_A          144 VWNRTPQRALALA  156 (263)
T ss_dssp             EECSSHHHHHHHH
T ss_pred             EEECCHHHHHHHH
Confidence            9999999988764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.92  E-value=1.8e-26  Score=223.28  Aligned_cols=147  Identities=15%  Similarity=0.075  Sum_probs=127.1

Q ss_pred             cCCcccCCHHhHHHHHH-----hcCCCceEeecCc--ccHHHHHHHh-cCCCCCeEEEcccchH-HHHhhhhhhcHHHHH
Q 015310          246 KPVGHSKGPILHNPTFR-----HVNYNGIYVPMFV--DDLKKFFSTY-SSPDFAGFSVGFPYKE-AVMKFCDEVHPLAQA  316 (409)
Q Consensus       246 ~pi~hS~SP~ihn~~f~-----~~gl~~~y~~~~~--~~l~~~~~~~-~~~~~~G~nVT~P~K~-~i~~~~d~~~~~A~~  316 (409)
                      .||.||+||.|||.+|+     .+|+++.|.++++  ++++.+++.+ ...+.+|+|||.|||. ..+..++++.+.++.
T Consensus         2 ~~i~hs~sp~~h~~~~~~~~~~~~g~~~~y~~~~v~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~~~   81 (287)
T 1lu9_A            2 KKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKK   81 (287)
T ss_dssp             CCEEEEEESSSSCCHHHHHHHHHTTCSEEEEESSCCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHHH
T ss_pred             CceEEEccCCCCCCchhhheeeccCcceEeccCCcCHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHHHH
Confidence            69999999999999999     4999999999988  6899999985 6778999999999976 556667777666665


Q ss_pred             --hccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEe-chhHHHHHHHHHHhCCCe
Q 015310          317 --IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAG-AGGAGRALAFGAKSRGAR  393 (409)
Q Consensus       317 --igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlG-aGGaarai~~aL~~~G~~  393 (409)
                        +||+||++..  +  +.|+|||+.||+.+|++.+.            .++++|+++|+| +||+|++++++|.+.|++
T Consensus        82 ~~~gavnt~~~~--~--~~G~nTd~~g~~~~l~~~~~------------~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~  145 (287)
T 1lu9_A           82 RFFGPFRVSCML--D--SNGSNTTAAAGVALVVKAAG------------GSVKGKKAVVLAGTGPVGMRSAALLAGEGAE  145 (287)
T ss_dssp             HCBTTBCCEEEE--C--STTHHHHHHHHHHHHHHHTT------------SCCTTCEEEEETCSSHHHHHHHHHHHHTTCE
T ss_pred             hcCCCeEEEEec--C--CCcCCchHHHHHHHHHHhhc------------cCCCCCEEEEECCCcHHHHHHHHHHHHCcCE
Confidence              4999999876  4  47999999999999875311            346789999999 899999999999999999


Q ss_pred             EEEEeCChHHHHhhh
Q 015310          394 VVIFDIDFEQSLLLL  408 (409)
Q Consensus       394 i~v~nR~~~ka~~la  408 (409)
                      |++++|+.+++++++
T Consensus       146 V~i~~R~~~~~~~l~  160 (287)
T 1lu9_A          146 VVLCGRKLDKAQAAA  160 (287)
T ss_dssp             EEEEESSHHHHHHHH
T ss_pred             EEEEECCHHHHHHHH
Confidence            999999999988764

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=99.90  E-value=2.6e-25  Score=225.89  Aligned_cols=139  Identities=15%  Similarity=0.247  Sum_probs=121.0

Q ss_pred             ccccceEEe--eeccCCcccCCHHhHHHH--HHhc-CCCceEeecCcc---cHHHHHHHhcCCCCCeEEE---cccchHH
Q 015310          234 INADTKVFG--LISKPVGHSKGPILHNPT--FRHV-NYNGIYVPMFVD---DLKKFFSTYSSPDFAGFSV---GFPYKEA  302 (409)
Q Consensus       234 i~~~~~~~~--viG~pi~hS~SP~ihn~~--f~~~-gl~~~y~~~~~~---~l~~~~~~~~~~~~~G~nV---T~P~K~~  302 (409)
                      ++..++++|  ++|+   ||.||.|||++  |+++ |+|+.|.+++++   ++.++++.++ ++|.|+||   |+|||++
T Consensus        69 vtdgt~ilGlG~iG~---hS~sPvmh~ka~lf~~~gGid~~yi~ldv~d~de~~~~v~~l~-~~f~GinvED~T~P~k~~  144 (439)
T 2dvm_A           69 VSDGSRILGLGNIGP---LAGLPVMEGKALLFKRFGGVDAFPIMIKEQEPNKFIDIVKAIA-PTFGGINLEDIASPKCFY  144 (439)
T ss_dssp             EECSTTBTTTBCCCH---HHHHHHHHHHHHHHHHHHCCEEEEEECSCCSHHHHHHHHHHTG-GGCSEEEECSCCTTHHHH
T ss_pred             EECCCeEecccceec---cccCHHHHHHHHHHHHhCCCCCeeeeeecCCHHHHHHHHHHhC-ccCcEEEEEeCCCchHHH
Confidence            344567777  9998   99999999966  9999 899999999993   5666666666 89999999   9999999


Q ss_pred             HHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHH
Q 015310          303 VMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRA  382 (409)
Q Consensus       303 i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaara  382 (409)
                      +++++|+         ||||+++.. |+++.| |||+.||+++|+..             +.++++++++|+||||||++
T Consensus       145 il~~l~~---------avNt~vf~d-D~~gtg-ntd~aG~~~AL~~~-------------g~~l~~~rvlvlGAGgAg~a  200 (439)
T 2dvm_A          145 ILERLRE---------ELDIPVFHD-DQQGTA-AVVLAGLLNALKVV-------------GKKISEITLALFGAGAAGFA  200 (439)
T ss_dssp             HHHHHHH---------HCSSCEEEH-HHHHHH-HHHHHHHHHHHHHH-------------TCCTTTCCEEEECCSHHHHH
T ss_pred             HHHHHHH---------hcCEEEEeC-CCcEEe-ehHHHHHHHHHHHh-------------CCCccCCEEEEECccHHHHH
Confidence            9999986         899999862 778999 99999999999753             14577899999999999999


Q ss_pred             HHHHHHhCCC---eEEEEe----CC
Q 015310          383 LAFGAKSRGA---RVVIFD----ID  400 (409)
Q Consensus       383 i~~aL~~~G~---~i~v~n----R~  400 (409)
                      +++.|.++|+   +|+|+|    |+
T Consensus       201 ia~~L~~~G~~~~~I~vvd~~~~R~  225 (439)
T 2dvm_A          201 TLRILTEAGVKPENVRVVELVNGKP  225 (439)
T ss_dssp             HHHHHHHTTCCGGGEEEEEEETTEE
T ss_pred             HHHHHHHcCCCcCeEEEEEccCCCc
Confidence            9999999998   799999    98

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.53  E-value=3.8e-16  Score=155.78  Aligned_cols=132  Identities=17%  Similarity=0.185  Sum_probs=109.3

Q ss_pred             CCcccCCHHhHHHHHHhcCC-CceEeecCcccHHHHHHHhcCCCCCeEEE-cccchHHHHhhhhhhcHHHHHh----ccc
Q 015310          247 PVGHSKGPILHNPTFRHVNY-NGIYVPMFVDDLKKFFSTYSSPDFAGFSV-GFPYKEAVMKFCDEVHPLAQAI----AAV  320 (409)
Q Consensus       247 pi~hS~SP~ihn~~f~~~gl-~~~y~~~~~~~l~~~~~~~~~~~~~G~nV-T~P~K~~i~~~~d~~~~~A~~i----gAv  320 (409)
                      .|-+++||.+||..|.+.|+ .+.|..+.++  +.+++.++..++.|+|+ |+|||+.+++++|.+++.|..+    ||+
T Consensus        69 ~i~~vksP~~~~~~~~~~g~~~~~y~~~~~~--~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~  146 (361)
T 1pjc_A           69 MVVKVKEPLPAEYDLMQKDQLLFTYLHLAAA--RELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGAR  146 (361)
T ss_dssp             EEECSSCCCGGGGGGCCTTCEEEECCCGGGC--HHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCHHHHHhhcCCCEEEEEeccccC--HHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHH
Confidence            34478899999999999997 8899998875  24566666678999999 9999999999999999999999    999


Q ss_pred             eEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          321 NTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       321 Nti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ||+...  +|+  |+..      ..    +             ..+++++|+|+|+||+|++++..+..+|++|++++|+
T Consensus       147 nt~~~~--~g~--G~~l------~~----l-------------~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~  199 (361)
T 1pjc_A          147 FLERQQ--GGR--GVLL------GG----V-------------PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN  199 (361)
T ss_dssp             HTSGGG--TSC--CCCT------TC----B-------------TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             HHhhcc--CCC--ceec------cC----C-------------CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            999765  554  3320      11    1             1245689999999999999999999999999999999


Q ss_pred             hHHHHhh
Q 015310          401 FEQSLLL  407 (409)
Q Consensus       401 ~~ka~~l  407 (409)
                      .+|++.+
T Consensus       200 ~~r~~~~  206 (361)
T 1pjc_A          200 VERLSYL  206 (361)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988765

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.74  E-value=5.5e-09  Score=99.97  Aligned_cols=144  Identities=11%  Similarity=0.076  Sum_probs=106.0

Q ss_pred             Eeeec-cCCcccCCHHhHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccch-----HHHHhhhhh
Q 015310          241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDE  309 (409)
Q Consensus       241 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K-----~~i~~~~d~  309 (409)
                      .-++| +|-|++-- ..-...++++|++..+..++.    +++.+.++.+ .++++.|+.|.+|++     +.++..++-
T Consensus        39 vilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p  117 (285)
T 3l07_A           39 AIIVGNDPASKTYV-ASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKP  117 (285)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCc
Confidence            33456 44333221 234457899999999998853    4677777777 467899999999997     666666655


Q ss_pred             hcHHHHHhccceEEEEeCCCCe-EEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHH
Q 015310          310 VHPLAQAIAAVNTIIRRPSDGK-LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGA  387 (409)
Q Consensus       310 ~~~~A~~igAvNti~~~~~~g~-l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL  387 (409)
                       +..+.-++.+|+-...  .|. ....+++-.|++..|++.             +.+++||+++|+|+|+ +|+.++..|
T Consensus       118 -~KDVDG~~~~N~G~l~--~g~~~~~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVIG~s~iVG~p~A~lL  181 (285)
T 3l07_A          118 -EKDVDGFHPTNVGRLQ--LRDKKCLESCTPKGIMTMLREY-------------GIKTEGAYAVVVGASNVVGKPVSQLL  181 (285)
T ss_dssp             -GGBTTCCSHHHHHHHH--HTCTTCCCCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHHH
T ss_pred             -ccccccCChhheeehh--cCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCchhHHHHHHHH
Confidence             5555666777765322  122 345788999999988763             2678999999999999 799999999


Q ss_pred             HhCCCeEEEEeCCh
Q 015310          388 KSRGARVVIFDIDF  401 (409)
Q Consensus       388 ~~~G~~i~v~nR~~  401 (409)
                      ...|+.|+|++|+.
T Consensus       182 ~~~gAtVtv~hs~t  195 (285)
T 3l07_A          182 LNAKATVTTCHRFT  195 (285)
T ss_dssp             HHTTCEEEEECTTC
T ss_pred             HHCCCeEEEEeCCc
Confidence            99999999999753

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.72  E-value=7.9e-09  Score=98.87  Aligned_cols=147  Identities=15%  Similarity=0.170  Sum_probs=104.7

Q ss_pred             Eeeec-cCCcccCCHHhHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccch-----HHHHhhhhh
Q 015310          241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDE  309 (409)
Q Consensus       241 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K-----~~i~~~~d~  309 (409)
                      .-++| +|-|++--- .-.++++++|++..+..++.    +++.+.++.+ .++++.|+.|++|++     +.++..++-
T Consensus        38 vilvg~dpaS~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p  116 (285)
T 3p2o_A           38 VILVGDNPASQTYVK-SKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS  116 (285)
T ss_dssp             EEEESCCHHHHHHHH-HHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCG
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCc
Confidence            34456 443333221 33457899999999998873    4677777777 467999999999997     556655543


Q ss_pred             hcHHHHHhccceEEEEeCCCCeEEE-EcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHH
Q 015310          310 VHPLAQAIAAVNTIIRRPSDGKLIG-YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGA  387 (409)
Q Consensus       310 ~~~~A~~igAvNti~~~~~~g~l~G-~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL  387 (409)
                       +..+.-+..+|+-...  .|...| .+++-.|++..|++.             +.+++||+++|+|+|+ +|+.++..|
T Consensus       117 -~KDVDg~~~~N~g~l~--~g~~~g~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVvGrs~iVG~p~A~lL  180 (285)
T 3p2o_A          117 -SKDVDGFHPINVGYLN--LGLESGFLPCTPLGVMKLLKAY-------------EIDLEGKDAVIIGASNIVGRPMATML  180 (285)
T ss_dssp             -GGCTTCCSHHHHHHHH--TTCCSSCCCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHHH
T ss_pred             -ccccccCCHhhhhhhh--cCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCchHHHHHHHHH
Confidence             3344445666754222  222332 788999999988763             2678999999999998 799999999


Q ss_pred             HhCCCeEEEEeCChHHH
Q 015310          388 KSRGARVVIFDIDFEQS  404 (409)
Q Consensus       388 ~~~G~~i~v~nR~~~ka  404 (409)
                      ...|+.|+|++|+....
T Consensus       181 ~~~gAtVtv~h~~t~~L  197 (285)
T 3p2o_A          181 LNAGATVSVCHIKTKDL  197 (285)
T ss_dssp             HHTTCEEEEECTTCSCH
T ss_pred             HHCCCeEEEEeCCchhH
Confidence            99999999999864433

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.64  E-value=1.9e-08  Score=96.27  Aligned_cols=143  Identities=16%  Similarity=0.167  Sum_probs=103.9

Q ss_pred             Eeeec-cCCcccCCHHhHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchH-----HHHhhhhh
Q 015310          241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKE-----AVMKFCDE  309 (409)
Q Consensus       241 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~-----~i~~~~d~  309 (409)
                      .-++| +|-|++--- .-.++++++|++..+..++.    +++.+.++.+ .++++.|+.|.+|++.     .++..++-
T Consensus        40 vilvg~dpaS~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p  118 (286)
T 4a5o_A           40 VILVGTDPASQVYVA-HKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHP  118 (286)
T ss_dssp             EEEESCCHHHHHHHH-HHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCG
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCc
Confidence            34556 444443211 33457899999999998853    4677777777 4678999999999976     55555543


Q ss_pred             hcHHHHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHH
Q 015310          310 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAK  388 (409)
Q Consensus       310 ~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~  388 (409)
                       +..+.-+..+|+-...  .|.....+++-.|++..|++.             +.+++||+++|+|+|+ +|+.++..|.
T Consensus       119 -~KDVDG~~~~N~g~l~--~g~~~~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVvGrs~iVG~plA~lL~  182 (286)
T 4a5o_A          119 -DKDVDGFHPYNIGRLA--QRMPLLRPCTPKGIMTLLAST-------------GADLYGMDAVVVGASNIVGRPMALELL  182 (286)
T ss_dssp             -GGCTTCCSHHHHHHHH--TTCCSSCCHHHHHHHHHHHHT-------------TCCCTTCEEEEECTTSTTHHHHHHHHH
T ss_pred             -ccccccCChhhhHHHh--cCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCchhHHHHHHHHH
Confidence             4445556677764222  222345788999999988763             2678999999999998 8999999999


Q ss_pred             hCCCeEEEEeCC
Q 015310          389 SRGARVVIFDID  400 (409)
Q Consensus       389 ~~G~~i~v~nR~  400 (409)
                      ..|+.|++++|.
T Consensus       183 ~~gAtVtv~hs~  194 (286)
T 4a5o_A          183 LGGCTVTVTHRF  194 (286)
T ss_dssp             HTTCEEEEECTT
T ss_pred             HCCCeEEEEeCC
Confidence            999999999873

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.64  E-value=3.5e-08  Score=95.03  Aligned_cols=143  Identities=17%  Similarity=0.176  Sum_probs=103.9

Q ss_pred             Eeeec-cCCcccCCHHhHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccch-----HHHHhhhhh
Q 015310          241 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDE  309 (409)
Q Consensus       241 ~~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K-----~~i~~~~d~  309 (409)
                      .-++| +|-|++--- .-..+++++|++..+..++.    +++.+.++.+ .++++.|+.|.+|++     +.++..++-
T Consensus        42 vilvg~dpaS~~Yv~-~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p  120 (300)
T 4a26_A           42 SIIVGQRMDSKKYVQ-LKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHP  120 (300)
T ss_dssp             EEEESCCHHHHHHHH-HHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCG
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCc
Confidence            34556 444443222 33456899999999998853    4677777777 467899999999998     666666654


Q ss_pred             hcHHHHHhccceEEEEeCCCC-eEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHH
Q 015310          310 VHPLAQAIAAVNTIIRRPSDG-KLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGA  387 (409)
Q Consensus       310 ~~~~A~~igAvNti~~~~~~g-~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL  387 (409)
                       +..+.-+..+|+-.... ++ .-.-.+++-.|++..|++.             +.+++|++++|+|+|+ +|+.++..|
T Consensus       121 -~KDVDG~~~~N~G~l~~-g~~~~~~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVIG~s~iVG~p~A~lL  185 (300)
T 4a26_A          121 -HKDADALLPVNVGLLHY-KGREPPFTPCTAKGVIVLLKRC-------------GIEMAGKRAVVLGRSNIVGAPVAALL  185 (300)
T ss_dssp             -GGCTTCCSHHHHHHHHC-TTCCCSCCCHHHHHHHHHHHHH-------------TCCCTTCEEEEECCCTTTHHHHHHHH
T ss_pred             -ccccccCCcceEEEeec-CCCcCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCchHHHHHHHHH
Confidence             44455566777643220 11 1112688889999998764             2678999999999999 799999999


Q ss_pred             HhCCCeEEEEeC
Q 015310          388 KSRGARVVIFDI  399 (409)
Q Consensus       388 ~~~G~~i~v~nR  399 (409)
                      ...|+.|+|++|
T Consensus       186 ~~~gAtVtv~~~  197 (300)
T 4a26_A          186 MKENATVTIVHS  197 (300)
T ss_dssp             HHTTCEEEEECT
T ss_pred             HHCCCeEEEEeC
Confidence            999999999998

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=97.83  E-value=9.9e-06  Score=84.82  Aligned_cols=70  Identities=19%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCcHHHHHHHHHHH-------HH--hcCcCCCCCCCC-CCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEE
Q 015310          328 SDGKLIGYNTDCEASITAIEDA-------IK--ERGYKNGTASFG-SPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVI  396 (409)
Q Consensus       328 ~~g~l~G~NTD~~G~~~~l~~~-------l~--~~~~~~~~~~~~-~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v  396 (409)
                      .+|++.|+|||+.|++.+++-.       ++  +-..-.   ..+ ..+++++|+|+|+||.|.+++..|+..|+ +|+|
T Consensus       280 ~~Gkl~g~~tD~~g~l~~~~la~~~~~lnL~lmrwrll~---~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItL  356 (598)
T 3vh1_A          280 VQGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILP---DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITF  356 (598)
T ss_dssp             TTSSSSCEEEECHHHHCHHHHHHHHHHHHHHHHHHHHCT---TCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCCCCcceeecchhccCHHHHHHHHHhhhhhhhhhhccc---hhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            3799999999999999988611       00  000000   000 23567899999999999999999999999 9999


Q ss_pred             EeCC
Q 015310          397 FDID  400 (409)
Q Consensus       397 ~nR~  400 (409)
                      ++.+
T Consensus       357 vD~D  360 (598)
T 3vh1_A          357 VDNG  360 (598)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            9544

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.69  E-value=1.8e-05  Score=78.19  Aligned_cols=65  Identities=18%  Similarity=0.206  Sum_probs=53.7

Q ss_pred             CCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHh-CCC-eEEEEeCChHHHHh
Q 015310          329 DGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       329 ~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~-~G~-~i~v~nR~~~ka~~  406 (409)
                      ++.+.|+|||..|++.+..  +.             ....+++.|||+|++|++.+.+|.. .+. +|+|+||+.+++++
T Consensus       105 ~~~lT~~RTaa~s~laa~~--la-------------~~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~  169 (350)
T 1x7d_A          105 LTIATALRTAATSLMAAQA--LA-------------RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAK  169 (350)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--HS-------------CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHH
T ss_pred             CCEEEeehhhHHHHHHHHH--hc-------------cccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence            4568889999999998863  32             1246799999999999999988754 566 89999999999998


Q ss_pred             hh
Q 015310          407 LL  408 (409)
Q Consensus       407 la  408 (409)
                      ++
T Consensus       170 la  171 (350)
T 1x7d_A          170 LI  171 (350)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.65  E-value=2.5e-05  Score=76.22  Aligned_cols=65  Identities=12%  Similarity=0.100  Sum_probs=53.4

Q ss_pred             CCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHh-CCC-eEEEEeCChHHHHh
Q 015310          329 DGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       329 ~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~-~G~-~i~v~nR~~~ka~~  406 (409)
                      ++.+.++||+..|.+.+..  +.             ....++++|||+|++|++.+.+|.+ .++ +|+|+||+.+++++
T Consensus       101 ~~~lt~~RTaa~s~laa~~--la-------------~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~  165 (322)
T 1omo_A          101 ATYTTSLRTGAAGGIAAKY--LA-------------RKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKK  165 (322)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--HS-------------CTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHh--cc-------------CCCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHH
Confidence            3457789999999988752  32             1246799999999999999999987 456 89999999999998


Q ss_pred             hh
Q 015310          407 LL  408 (409)
Q Consensus       407 la  408 (409)
                      ++
T Consensus       166 la  167 (322)
T 1omo_A          166 FV  167 (322)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.52  E-value=3.9e-05  Score=74.46  Aligned_cols=65  Identities=15%  Similarity=0.136  Sum_probs=53.9

Q ss_pred             CCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHh
Q 015310          329 DGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       329 ~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~  406 (409)
                      ++.+.++|||..|++.+.  .+.             ....+++.|||+|.+|++.+.+|.+. |. +|+|+||+.+++++
T Consensus       111 ~~~lt~~rT~a~~~la~~--~la-------------~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~  175 (312)
T 2i99_A          111 GNVITAKRTAAVSAIATK--FLK-------------PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEK  175 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHH--HHS-------------CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHH--HhC-------------CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence            345788999999998873  232             23467899999999999999999876 88 99999999999988


Q ss_pred             hh
Q 015310          407 LL  408 (409)
Q Consensus       407 la  408 (409)
                      ++
T Consensus       176 l~  177 (312)
T 2i99_A          176 FA  177 (312)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.39  E-value=8.2e-05  Score=63.38  Aligned_cols=41  Identities=15%  Similarity=0.150  Sum_probs=38.4

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      +++++|+|+|++|++++..|...|++|++++|+.+++++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a   61 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFA   61 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHH
Confidence            78999999999999999999999999999999999998765

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=97.34  E-value=0.0029  Score=57.35  Aligned_cols=122  Identities=17%  Similarity=0.189  Sum_probs=78.1

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      ...|+.+|...+.+++.+.++.+.+.|+|++|+|.-.   .+..+.+..+.+..+.|+++-.     |+..  ++ +   
T Consensus         6 ~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~---~~~~~~i~~i~~~~~~~l~vg~-----g~~~--~~-~---   71 (212)
T 2v82_A            6 KLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNS---PQWEQSIPAIVDAYGDKALIGA-----GTVL--KP-E---   71 (212)
T ss_dssp             SSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTS---TTHHHHHHHHHHHHTTTSEEEE-----ECCC--SH-H---
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCC---hhHHHHHHHHHHhCCCCeEEEe-----cccc--CH-H---
Confidence            5667889999999999999999988999999998542   1222345555554567777621     2221  22 2   


Q ss_pred             HHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           90 ALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        90 ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      .++.+++.|+|+|=+.-. ..+..+   ..+..+.+++.+.|+      .+++    .+..+.|+|++++
T Consensus        72 ~i~~a~~~Gad~V~~~~~-~~~~~~---~~~~~g~~~~~g~~t------~~e~----~~a~~~G~d~v~v  127 (212)
T 2v82_A           72 QVDALARMGCQLIVTPNI-HSEVIR---RAVGYGMTVCPGCAT------ATEA----FTALEAGAQALKI  127 (212)
T ss_dssp             HHHHHHHTTCCEEECSSC-CHHHHH---HHHHTTCEEECEECS------HHHH----HHHHHTTCSEEEE
T ss_pred             HHHHHHHcCCCEEEeCCC-CHHHHH---HHHHcCCCEEeecCC------HHHH----HHHHHCCCCEEEE
Confidence            356778889999853321 122222   223356777777552      2343    3456789999996

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.27  E-value=0.00017  Score=73.86  Aligned_cols=45  Identities=13%  Similarity=0.131  Sum_probs=38.1

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCC-CeEEEEeCChHHHHhhh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G-~~i~v~nR~~~ka~~la  408 (409)
                      ..+++++++|+||||+|++++.+|.+.| ++|+|++|+.+++++++
T Consensus        19 ~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la   64 (467)
T 2axq_A           19 GRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALA   64 (467)
T ss_dssp             ----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHH
T ss_pred             cCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHH
Confidence            4567889999999999999999999995 59999999999998875

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.23  E-value=0.00028  Score=70.89  Aligned_cols=44  Identities=25%  Similarity=0.472  Sum_probs=40.1

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      ++.|++++|+|+|++|++++..|...|+ +|+++||+.+++++++
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la  208 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELA  208 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            3578999999999999999999999999 9999999999987664

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.20  E-value=0.00046  Score=55.59  Aligned_cols=42  Identities=24%  Similarity=0.248  Sum_probs=37.5

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCC-CeEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G-~~i~v~nR~~~ka~~la  408 (409)
                      .+++++|+|+|++|++++..|.+.| .+|++++|+.++++.+.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~   46 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN   46 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH
Confidence            3578999999999999999999999 59999999999887653

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.16  E-value=0.00063  Score=64.59  Aligned_cols=132  Identities=14%  Similarity=0.142  Sum_probs=82.0

Q ss_pred             eeec-cCCcccCCHHhHHHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHH
Q 015310          242 GLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ  315 (409)
Q Consensus       242 ~viG-~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~  315 (409)
                      -++| +|-|++--- .-.+..++.|+ .....++.    +++.+.++.+ .++++.|+-|-.|.-.    ++|+    -+
T Consensus        33 ilvg~dpaS~~Yv~-~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~----~id~----~~  102 (276)
T 3ngx_A           33 IQIGDNEAASIYAR-AKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPK----GFDY----YE  102 (276)
T ss_dssp             EEESCCHHHHHHHH-HHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSCCCT----TCCH----HH
T ss_pred             EEeCCCHHHHHHHH-HHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCCC----CCCH----HH
Confidence            3456 444433222 23446789999 76555542    3566666666 5788999999999742    2221    12


Q ss_pred             HhccceEEEEeCCCCeEEEEcCc-------------HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHH
Q 015310          316 AIAAVNTIIRRPSDGKLIGYNTD-------------CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGR  381 (409)
Q Consensus       316 ~igAvNti~~~~~~g~l~G~NTD-------------~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aar  381 (409)
                      .+.+++--.-  -|| ++-+|.-             -.|++..|++.              . ++|++++|+|+|+ +|+
T Consensus       103 v~~~I~p~KD--VDG-~~p~n~G~l~~g~~~~~PcTp~gv~~lL~~~--------------~-l~Gk~vvVvG~s~iVG~  164 (276)
T 3ngx_A          103 IVRNIPYYKD--VDA-LSPYNQGLIALNREFLVPATPRAVIDIMDYY--------------G-YHENTVTIVNRSPVVGR  164 (276)
T ss_dssp             HHTTSCGGGB--TTC-CSHHHHHHHHTTCCSSCCHHHHHHHHHHHHH--------------T-CCSCEEEEECCCTTTHH
T ss_pred             HHhhCCCCCc--ccC-CCccchhhhhcCCCCCCCCcHHHHHHHHHHh--------------C-cCCCEEEEEcCChHHHH
Confidence            2222222100  022 2212211             15777777653              2 7899999999998 899


Q ss_pred             HHHHHHHhCCCeEEEEeCCh
Q 015310          382 ALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       382 ai~~aL~~~G~~i~v~nR~~  401 (409)
                      .++..|...|+.|++++|+.
T Consensus       165 plA~lL~~~gAtVtv~~~~t  184 (276)
T 3ngx_A          165 PLSMMLLNRNYTVSVCHSKT  184 (276)
T ss_dssp             HHHHHHHHTTCEEEEECTTC
T ss_pred             HHHHHHHHCCCeEEEEeCCc
Confidence            99999999999999998853

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.15  E-value=0.00032  Score=68.22  Aligned_cols=129  Identities=18%  Similarity=0.124  Sum_probs=79.2

Q ss_pred             HHHHHhcCCCceEeecCcc-cHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC-----
Q 015310          258 NPTFRHVNYNGIYVPMFVD-DLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG-----  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~~-~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g-----  330 (409)
                      ....++.|+......++-+ ++.+.+..+ .++++.|+-|-.|.-..    +|+   . +.+.+++--. + =||     
T Consensus        58 ~k~~~~~Gi~~~~~~l~~~~~l~~~i~~lN~d~~v~GIlvqlPlp~~----~~~---~-~i~~~I~p~K-D-VDG~~~~n  127 (320)
T 1edz_A           58 QKTSESMGFRYDLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGN----AQD---Q-YLQQVVCKEK-D-VEGLNHVY  127 (320)
T ss_dssp             HHHHHHHTCEEEEEECSSGGGHHHHHHHHHHCTTCCEEEECSCSSSS----HHH---H-HHTTTSCTTT-B-TTCCSHHH
T ss_pred             HHHHHHcCCEEEEEECCChHHHHHHHHHHcCCCCCCEEEEeCCCCCC----CCH---H-HHHhccCccc-c-cCcCChhh
Confidence            4467899999877777654 477777777 67899999999997422    211   1 1222221100 0 011     


Q ss_pred             --eE-EE------------E-cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhH-HHHHHHHHHhCCCe
Q 015310          331 --KL-IG------------Y-NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGAR  393 (409)
Q Consensus       331 --~l-~G------------~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGa-arai~~aL~~~G~~  393 (409)
                        ++ .|            + -.--.|.+..|++.    +..+..=+.+.+++|++++|+|+|.+ |+.++..|...|+.
T Consensus       128 ~g~l~~~~~~l~~~~~~~~~~PcTp~a~v~ll~~~----~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAt  203 (320)
T 1edz_A          128 YQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFL----KIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGAT  203 (320)
T ss_dssp             HHHHHTTCCBSSSSSCSBCCCCHHHHHHHHHHHHT----TCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCE
T ss_pred             hHHHhcCCccccccccCCCcCCCcHHHHHHHHHhh----cccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCE
Confidence              00 00            0 01125666666542    00000000124788999999999985 99999999999999


Q ss_pred             EEEEeCC
Q 015310          394 VVIFDID  400 (409)
Q Consensus       394 i~v~nR~  400 (409)
                      |+|+||+
T Consensus       204 Vtv~nR~  210 (320)
T 1edz_A          204 VYSVDVN  210 (320)
T ss_dssp             EEEECSS
T ss_pred             EEEEeCc
Confidence            9999998

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=97.07  E-value=2e-05  Score=80.09  Aligned_cols=67  Identities=21%  Similarity=0.258  Sum_probs=50.7

Q ss_pred             HHHhccceEEEEeCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-
Q 015310          314 AQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-  392 (409)
Q Consensus       314 A~~igAvNti~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-  392 (409)
                      ...+|++|||+.+  +|++.|     .||...++..-             ..+++.+|+|+|+||.|..++..|+..|+ 
T Consensus         6 ~~r~~~vntl~~~--~g~~~g-----~gf~~g~e~~~-------------~~L~~~~VlvvG~GGlGs~va~~La~aGvg   65 (434)
T 1tt5_B            6 EGRWNHVKKFLER--SGPFTH-----PDFEPSTESLQ-------------FLLDTCKVLVIGAGGLGCELLKNLALSGFR   65 (434)
T ss_dssp             TTTTHHHHHHHHS--CCSSCC-----TTCCCCSSHHH-------------HHHHTCCEEEECSSTHHHHHHHHHHHTTCC
T ss_pred             hhhhccceEEEcC--CCcccc-----cccccCHHHHH-------------HHhcCCEEEEECcCHHHHHHHHHHHHcCCC
Confidence            4578999999987  787776     55544432210             01245789999999999999999999999 


Q ss_pred             eEEEEeCC
Q 015310          393 RVVIFDID  400 (409)
Q Consensus       393 ~i~v~nR~  400 (409)
                      +|+|++.+
T Consensus        66 ~i~ivD~D   73 (434)
T 1tt5_B           66 QIHVIDMD   73 (434)
T ss_dssp             CEEEEECC
T ss_pred             EEEEEcCC
Confidence            99999543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.90  E-value=0.0004  Score=65.09  Aligned_cols=36  Identities=28%  Similarity=0.426  Sum_probs=33.5

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            346799999999999999999999999 999999997

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=96.88  E-value=0.031  Score=51.58  Aligned_cols=118  Identities=16%  Similarity=0.213  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 015310           22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADY  101 (409)
Q Consensus        22 ~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dy  101 (409)
                      .+++.+.++.+...|+..++.        ...+.+..+++..++|+|--+|..-.|-.+-.++  +.+-.+.+.+.|+|+
T Consensus        35 ~~~~~~~A~a~~~~Ga~~i~~--------~~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~--~~~~i~~~~~aGad~  104 (229)
T 3q58_A           35 PEIVAAMAQAAASAGAVAVRI--------EGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITP--YLQDVDALAQAGADI  104 (229)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEE--------ESHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSC--SHHHHHHHHHHTCSE
T ss_pred             cchHHHHHHHHHHCCCcEEEE--------CCHHHHHHHHHhcCCCEEEEEeecCCCCceEeCc--cHHHHHHHHHcCCCE
Confidence            667777788888889999875        1235788888888999987766432221122222  223345677889999


Q ss_pred             EEEeccC--ccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310          102 VDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus       102 vDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      |=+....  .++.+.+++ ..++.+..++.+.|+      .++    .+++.+.|+|++-+
T Consensus       105 I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t------~ee----a~~a~~~Gad~Ig~  155 (229)
T 3q58_A          105 IAFDASFRSRPVDIDSLLTRIRLHGLLAMADCST------VNE----GISCHQKGIEFIGT  155 (229)
T ss_dssp             EEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSS------HHH----HHHHHHTTCSEEEC
T ss_pred             EEECccccCChHHHHHHHHHHHHCCCEEEEecCC------HHH----HHHHHhCCCCEEEe
Confidence            8776543  223344444 345568899999885      233    45677899999954

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.88  E-value=0.0015  Score=62.70  Aligned_cols=44  Identities=18%  Similarity=0.176  Sum_probs=39.8

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+.+++++|+|+|++|++++..|..+|++|++++|+.++.+.+
T Consensus       153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~  196 (300)
T 2rir_A          153 YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARI  196 (300)
T ss_dssp             SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            46789999999999999999999999999999999998876643

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.81  E-value=0.0018  Score=61.92  Aligned_cols=43  Identities=19%  Similarity=0.166  Sum_probs=38.9

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ..+.|++++|+|+|++|++++..|..+|++|++++|+.++.+.
T Consensus       151 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~  193 (293)
T 3d4o_A          151 FTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLAR  193 (293)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            4578999999999999999999999999999999999877543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.79  E-value=0.0035  Score=62.07  Aligned_cols=44  Identities=23%  Similarity=0.373  Sum_probs=41.0

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      +++||+++|+|+|.+|+.++..|.++|++|+++||+.+++++++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a  213 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAV  213 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            68899999999999999999999999999999999999888764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.77  E-value=0.0018  Score=55.57  Aligned_cols=43  Identities=28%  Similarity=0.253  Sum_probs=38.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ..+++++|+|+|..|+.++..|.+.|.+|++++|++++++.+.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~   59 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLN   59 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH
Confidence            4578999999999999999999999999999999999887653

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.68  E-value=0.0031  Score=64.63  Aligned_cols=44  Identities=36%  Similarity=0.498  Sum_probs=40.0

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+.||+++|+|+||.|++++..|+..|++|++++|++.++.+.
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~A  304 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQA  304 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            45789999999999999999999999999999999998877543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.67  E-value=0.0021  Score=58.59  Aligned_cols=44  Identities=27%  Similarity=0.253  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+++++++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~   61 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL   61 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHH
Confidence            4578999999997 8999999999999999999999999887765

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=96.60  E-value=0.059  Score=49.74  Aligned_cols=126  Identities=16%  Similarity=0.110  Sum_probs=81.1

Q ss_pred             EEEeeccCC------HHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCC-CCCCHH
Q 015310           13 ICAPLMAQS------VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGL-YEGDEH   85 (409)
Q Consensus        13 icv~l~~~~------~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~-~~~~~~   85 (409)
                      +.|+.-...      .+++.+.++.+.+.|+..++.        ...+.+..+++..++|+|--+|. .-||. +-.++ 
T Consensus        20 livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~--------~~~~~i~~ir~~v~~Pvig~~k~-d~~~~~~~I~~-   89 (232)
T 3igs_A           20 LIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRI--------EGIDNLRMTRSLVSVPIIGIIKR-DLDESPVRITP-   89 (232)
T ss_dssp             EEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEE--------ESHHHHHHHHTTCCSCEEEECBC-CCSSCCCCBSC-
T ss_pred             EEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEE--------CCHHHHHHHHHhcCCCEEEEEee-cCCCcceEeCc-
Confidence            445544444      677777788888889999875        12357888888889999755553 33552 22222 


Q ss_pred             HHHHHHHHHHHcCCcEEEEeccC--ccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           86 KRLEALHLAEDLGADYVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        86 ~~~~ll~~~~~~g~dyvDiEl~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                       +.+-.+.+.+.|+|+|=+....  .++.+++++ ..++.+..++.+.|+      .    +..+++.+.|+|++-+
T Consensus        90 -~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t------~----eea~~a~~~Gad~Ig~  155 (232)
T 3igs_A           90 -FLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSS------V----DDGLACQRLGADIIGT  155 (232)
T ss_dssp             -SHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCS------H----HHHHHHHHTTCSEEEC
T ss_pred             -cHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCC------H----HHHHHHHhCCCCEEEE
Confidence             2233456778899998776543  123344444 345568899999885      2    2346677899999953

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.53  E-value=0.0016  Score=61.11  Aligned_cols=35  Identities=29%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++++|+|+|+||+|..++..|+..|+ +|+|++++
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            346799999999999999999999999 99999654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.51  E-value=0.0035  Score=59.60  Aligned_cols=43  Identities=30%  Similarity=0.303  Sum_probs=39.3

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ++||.+||-|+ +|.|++++..|++.|++|++++|+.++.++++
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~   70 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAI   70 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            78999999986 78999999999999999999999999887754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.49  E-value=0.0034  Score=52.67  Aligned_cols=40  Identities=25%  Similarity=0.339  Sum_probs=37.1

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .++++|+|+|..|++++..|.+.|.+|++++|++++++.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~   45 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELL   45 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence            5689999999999999999999999999999999988765

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=96.47  E-value=0.069  Score=49.05  Aligned_cols=121  Identities=17%  Similarity=0.241  Sum_probs=70.6

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      .|+.-|...+.+++...++.+.+.|++++|+|..   ..+..+.++.+.+..+ .+++-.      |. -.+. +   -.
T Consensus        18 ~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~-~l~vga------Gt-vl~~-d---~~   82 (224)
T 1vhc_A           18 KIVPVIALDNADDILPLADTLAKNGLSVAEITFR---SEAAADAIRLLRANRP-DFLIAA------GT-VLTA-E---QV   82 (224)
T ss_dssp             CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETT---STTHHHHHHHHHHHCT-TCEEEE------ES-CCSH-H---HH
T ss_pred             CeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEecc---CchHHHHHHHHHHhCc-CcEEee------Cc-EeeH-H---HH
Confidence            3445567788999998899999999999999943   2232344555555443 233222      11 1222 3   34


Q ss_pred             HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      +.+++.|+|+|=.- ....+..+   ..++.+..+|.-.|    ||  +|+    .++.+.|+|++|+  .|
T Consensus        83 ~~A~~aGAd~v~~p-~~d~~v~~---~ar~~g~~~i~Gv~----t~--~e~----~~A~~~Gad~vk~--Fp  138 (224)
T 1vhc_A           83 VLAKSSGADFVVTP-GLNPKIVK---LCQDLNFPITPGVN----NP--MAI----EIALEMGISAVKF--FP  138 (224)
T ss_dssp             HHHHHHTCSEEECS-SCCHHHHH---HHHHTTCCEECEEC----SH--HHH----HHHHHTTCCEEEE--TT
T ss_pred             HHHHHCCCCEEEEC-CCCHHHHH---HHHHhCCCEEeccC----CH--HHH----HHHHHCCCCEEEE--ee
Confidence            56788899999322 11222222   22234555554444    33  333    4566889999999  55

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=96.40  E-value=0.083  Score=48.13  Aligned_cols=121  Identities=13%  Similarity=0.146  Sum_probs=72.6

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      .++..|...+.+++...++.+.+.|++++|+|..   .....+.++.+.+..+-.++ -.      |.. .+. +   -.
T Consensus        17 ~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~~~~v-ga------gtv-i~~-d---~~   81 (214)
T 1wbh_A           17 PVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLR---TECAVDAIRAIAKEVPEAIV-GA------GTV-LNP-Q---QL   81 (214)
T ss_dssp             SEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESC---STTHHHHHHHHHHHCTTSEE-EE------ESC-CSH-H---HH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCC---ChhHHHHHHHHHHHCcCCEE-ee------CEE-EEH-H---HH
Confidence            3555667788999998899999999999999953   22223445555554432222 11      222 232 2   34


Q ss_pred             HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      +.+++.|+|+|=.- ..+.+..+   ..+..+..+|...|    ||  +|    +.++.+.|+|++|+  .|
T Consensus        82 ~~A~~aGAd~v~~p-~~d~~v~~---~~~~~g~~~i~G~~----t~--~e----~~~A~~~Gad~v~~--Fp  137 (214)
T 1wbh_A           82 AEVTEAGAQFAISP-GLTEPLLK---AATEGTIPLIPGIS----TV--SE----LMLGMDYGLKEFKF--FP  137 (214)
T ss_dssp             HHHHHHTCSCEEES-SCCHHHHH---HHHHSSSCEEEEES----SH--HH----HHHHHHTTCCEEEE--TT
T ss_pred             HHHHHcCCCEEEcC-CCCHHHHH---HHHHhCCCEEEecC----CH--HH----HHHHHHCCCCEEEE--ec
Confidence            56788899998543 22222221   22335566666665    33  33    34556789999999  55

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.37  E-value=0.005  Score=57.71  Aligned_cols=44  Identities=27%  Similarity=0.413  Sum_probs=39.1

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   61 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEA   61 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            5678999999985 8899999999999999999999998876654

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=96.36  E-value=0.068  Score=48.42  Aligned_cols=120  Identities=18%  Similarity=0.209  Sum_probs=70.4

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      .|+..+...+.+++...++.+.+.|++++|+|..   ..+..+.++.+++ .+  +++-.      |.. ... +   -+
T Consensus        14 ~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k---~~~~~~~i~~~~~-~~--~~~ga------g~v-l~~-d---~~   76 (207)
T 2yw3_A           14 RLLPLLTVRGGEDLLGLARVLEEEGVGALEITLR---TEKGLEALKALRK-SG--LLLGA------GTV-RSP-K---EA   76 (207)
T ss_dssp             CEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECS---STHHHHHHHHHTT-SS--CEEEE------ESC-CSH-H---HH
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCC---ChHHHHHHHHHhC-CC--CEEEe------CeE-eeH-H---HH
Confidence            4556667778888888888888889999999953   2222334444444 22  22222      221 222 3   34


Q ss_pred             HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                      +.+++.|+++|=.- ..+.+..+..   +..+..+|...|+    |  +|+    .++.+.|+|++|+  .|.
T Consensus        77 ~~A~~~GAd~v~~~-~~d~~v~~~~---~~~g~~~i~G~~t----~--~e~----~~A~~~Gad~v~~--fpa  133 (207)
T 2yw3_A           77 EAALEAGAAFLVSP-GLLEEVAALA---QARGVPYLPGVLT----P--TEV----ERALALGLSALKF--FPA  133 (207)
T ss_dssp             HHHHHHTCSEEEES-SCCHHHHHHH---HHHTCCEEEEECS----H--HHH----HHHHHTTCCEEEE--TTT
T ss_pred             HHHHHcCCCEEEcC-CCCHHHHHHH---HHhCCCEEecCCC----H--HHH----HHHHHCCCCEEEE--ecC
Confidence            56788899998543 2222222222   2245566766663    3  333    4455779999999  553

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.34  E-value=0.0048  Score=61.24  Aligned_cols=43  Identities=33%  Similarity=0.372  Sum_probs=38.6

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+.+++++|+|+|++|++++..+..+|++|++++|+.++.+.+
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~  207 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQL  207 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH
Confidence            3678999999999999999999999999999999998886543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.34  E-value=0.0047  Score=61.03  Aligned_cols=43  Identities=30%  Similarity=0.374  Sum_probs=38.7

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+++++++|+|+|++|++++..+..+|++|++++|+.++.+.+
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~  205 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYL  205 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            3678999999999999999999999999999999998876654

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=96.31  E-value=0.051  Score=49.76  Aligned_cols=113  Identities=13%  Similarity=0.123  Sum_probs=72.4

Q ss_pred             CCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEe-c--CCCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCCC
Q 015310            8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-D--CINNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGD   83 (409)
Q Consensus         8 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~   83 (409)
                      ..+|+|+.+|..-+..++.++++.+.+.|+|++++|+ |  +.++... .+.++.+++.++.|+.+.+=..        +
T Consensus         4 ~~~~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~--------d   75 (228)
T 1h1y_A            4 AAAAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVT--------N   75 (228)
T ss_dssp             --CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESS--------C
T ss_pred             ccCCeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEec--------C
Confidence            3568899999999999999999998888999999996 2  2222221 2466677766677887666542        1


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeccCccch-HHHHHhccCCCcEEEEecc
Q 015310           84 EHKRLEALHLAEDLGADYVDFELKVASNI-LGKQYSSHQSGTRFIVSCN  131 (409)
Q Consensus        84 ~~~~~~ll~~~~~~g~dyvDiEl~~~~~~-~~~l~~~~~~~~kiI~S~H  131 (409)
                      ++++   ++.+.+.|+|+|=+=....++. .+.+...++.+.++++|.+
T Consensus        76 ~~~~---i~~~~~agad~v~vH~~~~~~~~~~~~~~i~~~g~~igv~~~  121 (228)
T 1h1y_A           76 PSDY---VEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLR  121 (228)
T ss_dssp             GGGG---HHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEEC
T ss_pred             HHHH---HHHHHHcCCCEEEECCCCcccHHHHHHHHHHHcCCCEEEEEe
Confidence            2333   4556667899886654443333 1112223345677777774

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.26  E-value=0.003  Score=61.90  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=33.1

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      +++++|+|+|+||.|.+++..|+..|+ +|+|++++.
T Consensus        32 L~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           32 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            457899999999999999999999999 999998864

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.22  E-value=0.005  Score=57.81  Aligned_cols=45  Identities=29%  Similarity=0.418  Sum_probs=39.9

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ..+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.++++
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~   71 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALA   71 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHH
Confidence            3577899999996 88999999999999999999999998887653

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.19  E-value=0.0054  Score=57.04  Aligned_cols=44  Identities=32%  Similarity=0.329  Sum_probs=39.5

Q ss_pred             CCCCCCEEEEEec-h-hHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-G-GAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-G-Gaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+++|++||.|+ | |.|++++..|.+.|++|++++|+.++.+++
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~   63 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGET   63 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHH
Confidence            4578999999998 8 899999999999999999999998887654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.18  E-value=0.0051  Score=54.01  Aligned_cols=43  Identities=16%  Similarity=0.134  Sum_probs=38.6

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhC-CCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~-G~~i~v~nR~~~ka~~l  407 (409)
                      +..+++++|+|+|.+|+.++..|.+. |.+|++++|++++++.+
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~   79 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH   79 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence            35567899999999999999999999 99999999999988765

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.17  E-value=0.0066  Score=57.24  Aligned_cols=44  Identities=23%  Similarity=0.384  Sum_probs=39.3

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .++++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   72 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVV   72 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3578999999996 8899999999999999999999998887665

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.12  E-value=0.0048  Score=58.91  Aligned_cols=121  Identities=17%  Similarity=0.206  Sum_probs=77.5

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL  332 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l  332 (409)
                      .+..++.|+......++-    +++.+.+..+ .++.+.|+-|-.|.-.    ++|+   . +.+.+++--. + -|| +
T Consensus        55 ~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~----~id~---~-~i~~~I~p~K-D-VDG-~  123 (288)
T 1b0a_A           55 RKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPA----GIDN---V-KVLERIHPDK-D-VDG-F  123 (288)
T ss_dssp             HHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCT----TSCH---H-HHHTTSCTTT-C-TTC-C
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCC----CCCH---H-HHHhccCCcc-C-ccc-C
Confidence            345788999877666542    3677777777 5788999999999732    1211   1 1111221100 0 011 1


Q ss_pred             EEEc-------------CcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEe
Q 015310          333 IGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFD  398 (409)
Q Consensus       333 ~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~n  398 (409)
                      +=+|             .--.|++..|++.             +.+++|++++|+|+|+ +|+.++.-|...|+.|++++
T Consensus       124 ~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~-------------~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~h  190 (288)
T 1b0a_A          124 HPYNVGRLCQRAPRLRPCTPRGIVTLLERY-------------NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTH  190 (288)
T ss_dssp             SHHHHHHHHTTCCSSCCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEEC
T ss_pred             CccchhHHhCCCCCCCCCcHHHHHHHHHHc-------------CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEe
Confidence            1000             1125666766543             2578999999999998 69999999999999999998


Q ss_pred             CChH
Q 015310          399 IDFE  402 (409)
Q Consensus       399 R~~~  402 (409)
                      ++..
T Consensus       191 s~t~  194 (288)
T 1b0a_A          191 RFTK  194 (288)
T ss_dssp             SSCS
T ss_pred             CCch
Confidence            7643

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=96.12  E-value=0.1  Score=46.57  Aligned_cols=118  Identities=19%  Similarity=0.229  Sum_probs=75.6

Q ss_pred             eeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC--CCcEEE-EeccCCCCCCCCCCHHHH
Q 015310           11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK--PLPVLI-VYRPKWAGGLYEGDEHKR   87 (409)
Q Consensus        11 ~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~--~~PiI~-T~R~~~eGG~~~~~~~~~   87 (409)
                      ..++..+...+.+++.+.++.+.+.|+|++|+-+..   ....+.+..+++..  +.++-+ |+          .+.++ 
T Consensus        10 ~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~---~~~~~~i~~ir~~~~~~~~ig~~~v----------~~~~~-   75 (205)
T 1wa3_A           10 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTV---PDADTVIKELSFLKEKGAIIGAGTV----------TSVEQ-   75 (205)
T ss_dssp             HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTS---TTHHHHHHHTHHHHHTTCEEEEESC----------CSHHH-
T ss_pred             CCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCC---hhHHHHHHHHHHHCCCCcEEEeccc----------CCHHH-
Confidence            346678889999999998988888899999985542   11123355555443  334333 21          13332 


Q ss_pred             HHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           88 LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        88 ~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                         .+.+.+.|+||| +--....+.++.   .++.+..+|.-.|    ||  ++    +.++.+.|+|++|+
T Consensus        76 ---~~~a~~~Gad~i-v~~~~~~~~~~~---~~~~g~~vi~g~~----t~--~e----~~~a~~~Gad~vk~  130 (205)
T 1wa3_A           76 ---CRKAVESGAEFI-VSPHLDEEISQF---CKEKGVFYMPGVM----TP--TE----LVKAMKLGHTILKL  130 (205)
T ss_dssp             ---HHHHHHHTCSEE-ECSSCCHHHHHH---HHHHTCEEECEEC----SH--HH----HHHHHHTTCCEEEE
T ss_pred             ---HHHHHHcCCCEE-EcCCCCHHHHHH---HHHcCCcEECCcC----CH--HH----HHHHHHcCCCEEEE
Confidence               466778899999 765555444332   2346788887544    33  23    44667899999997

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.12  E-value=0.0071  Score=58.44  Aligned_cols=42  Identities=17%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ..+++.|||+|.+|++++..|.+.|.+|+++||++++++.++
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~   71 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLA   71 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH
Confidence            356899999999999999999999999999999999988774

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.11  E-value=0.0076  Score=50.77  Aligned_cols=40  Identities=18%  Similarity=0.148  Sum_probs=36.9

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ++++|+|.|..|+.++..|.+.|.+|+++++++++.+.+.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~   47 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELR   47 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            5799999999999999999999999999999999987653

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.10  E-value=0.0079  Score=56.74  Aligned_cols=45  Identities=29%  Similarity=0.400  Sum_probs=39.8

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ..+++|++||-|+ ||.|++++..|.+.|++|++++|+.+++++++
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   68 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVA   68 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4578899999985 88999999999999999999999998877653

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=96.08  E-value=0.21  Score=45.06  Aligned_cols=118  Identities=12%  Similarity=0.097  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCC-CHHHHHHHHHHHHHcCC
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEG-DEHKRLEALHLAEDLGA   99 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~-~~~~~~~ll~~~~~~g~   99 (409)
                      +.+...+.++.+.+.|++.++.  |     . .+.++.+++..++|++-.+|....|+..-. ...++   ++.+++.|+
T Consensus        21 ~~~~~~~~a~~~~~~Ga~~i~~--~-----~-~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~---i~~~~~~Ga   89 (223)
T 1y0e_A           21 SSFIMSKMALAAYEGGAVGIRA--N-----T-KEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKE---VDELIESQC   89 (223)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEE--E-----S-HHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHH---HHHHHHHTC
T ss_pred             CCccHHHHHHHHHHCCCeeecc--C-----C-HHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHH---HHHHHhCCC
Confidence            4456666677777789999975  3     1 246778887789999766665433433222 22233   445677899


Q ss_pred             cEEEEeccCc-------cchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310          100 DYVDFELKVA-------SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus       100 dyvDiEl~~~-------~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      |+|-+.....       .+.++.++... ++..++.+.|+      .++    ..++.+.|+|++.+.
T Consensus        90 d~v~l~~~~~~~p~~~~~~~i~~~~~~~-~~~~v~~~~~t------~~e----~~~~~~~G~d~i~~~  146 (223)
T 1y0e_A           90 EVIALDATLQQRPKETLDELVSYIRTHA-PNVEIMADIAT------VEE----AKNAARLGFDYIGTT  146 (223)
T ss_dssp             SEEEEECSCSCCSSSCHHHHHHHHHHHC-TTSEEEEECSS------HHH----HHHHHHTTCSEEECT
T ss_pred             CEEEEeeecccCcccCHHHHHHHHHHhC-CCceEEecCCC------HHH----HHHHHHcCCCEEEeC
Confidence            9887665431       13333333221 37778887763      233    334778899998753

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.07  E-value=0.0055  Score=60.91  Aligned_cols=41  Identities=24%  Similarity=0.196  Sum_probs=37.2

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      +.+++|+|+|+|++|++++..+..+|++|++++|+.++.+.
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~  210 (384)
T 1l7d_A          170 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQ  210 (384)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            56899999999999999999999999999999999877554

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.06  E-value=0.0072  Score=56.25  Aligned_cols=43  Identities=40%  Similarity=0.498  Sum_probs=38.8

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~   69 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAV   69 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            467899999995 8899999999999999999999999887765

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.05  E-value=0.0091  Score=55.97  Aligned_cols=44  Identities=23%  Similarity=0.197  Sum_probs=38.9

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   61 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDEC   61 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4578899999996 8899999999999999999999998877654

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.01  E-value=0.0098  Score=55.01  Aligned_cols=43  Identities=26%  Similarity=0.194  Sum_probs=37.8

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.+..++
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~   58 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR   58 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHh
Confidence            5688999999996 889999999999999999999999866554

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.01  E-value=0.0045  Score=59.41  Aligned_cols=36  Identities=25%  Similarity=0.411  Sum_probs=33.6

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus        34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            567899999999999999999999999 999999886

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=96.00  E-value=0.057  Score=48.32  Aligned_cols=131  Identities=13%  Similarity=0.077  Sum_probs=83.3

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (409)
                      ++|+.+-.++.++.++.++.+.. ++|++|+-..++.... .+.++.+++.. +.|+++.+-.. +     . .+.   .
T Consensus         2 ~li~a~d~~~~~~~~~~~~~~~~-~v~~iev~~~~~~~~g-~~~i~~l~~~~~~~~i~~~l~~~-d-----i-~~~---~   69 (207)
T 3ajx_A            2 KLQVAIDLLSTEAALELAGKVAE-YVDIIELGTPLIKAEG-LSVITAVKKAHPDKIVFADMKTM-D-----A-GEL---E   69 (207)
T ss_dssp             EEEEEECCSCHHHHHHHHHHHGG-GCSEEEECHHHHHHHC-THHHHHHHHHSTTSEEEEEEEEC-S-----C-HHH---H
T ss_pred             eEEEEeCCCCHHHHHHHHHHhhc-cCCEEEECcHHHHhhC-HHHHHHHHHhCCCCeEEEEEEec-C-----c-cHH---H
Confidence            58899999999999998888755 8999999776542222 23567777665 78999866532 1     1 233   3


Q ss_pred             HHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           91 LHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        91 l~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      .+.+.+.|+|+|=+-.....+.++.++ ..++.+.++-+|.|.. .||  ++   .++.+.+.|+|++|+.
T Consensus        70 ~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~g~~~gv~~~s~-~~p--~~---~~~~~~~~g~d~v~~~  134 (207)
T 3ajx_A           70 ADIAFKAGADLVTVLGSADDSTIAGAVKAAQAHNKGVVVDLIGI-EDK--AT---RAQEVRALGAKFVEMH  134 (207)
T ss_dssp             HHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTC-SSH--HH---HHHHHHHTTCSEEEEE
T ss_pred             HHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCceEEEEecC-CCh--HH---HHHHHHHhCCCEEEEE
Confidence            367888999999765544433333333 2233466776777732 133  23   2334445689999874

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.00  E-value=0.0094  Score=56.85  Aligned_cols=43  Identities=35%  Similarity=0.424  Sum_probs=38.9

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .++||++||.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~   71 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQA   71 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            478899999996 7899999999999999999999999887765

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=95.99  E-value=0.006  Score=57.71  Aligned_cols=44  Identities=25%  Similarity=0.286  Sum_probs=36.2

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .++||++||.|+ ||.|++++..|.+.|++|++++|+.++.++++
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   74 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAA   74 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            567899999995 88999999999999999999999998877653

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.99  E-value=0.0071  Score=54.97  Aligned_cols=42  Identities=21%  Similarity=0.244  Sum_probs=36.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ...++.|+|+|.+|++++..|.+.|.+|++++|+.++++.+.
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~   68 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLF   68 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            346899999999999999999999999999999999887653

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=95.98  E-value=0.0093  Score=56.16  Aligned_cols=43  Identities=37%  Similarity=0.500  Sum_probs=38.3

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ++++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~   69 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADT   69 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467899999996 8899999999999999999999998877654

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=95.98  E-value=0.009  Score=56.19  Aligned_cols=43  Identities=21%  Similarity=0.243  Sum_probs=38.3

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .++||++||.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~   67 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTA   67 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            478999999996 7899999999999999999999998876654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=95.98  E-value=0.0066  Score=57.33  Aligned_cols=44  Identities=32%  Similarity=0.417  Sum_probs=38.7

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      +++||++||.|+ ||.|++++..|.+.|++|++++|+.+++++++
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~   70 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAA   70 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            478999999985 78999999999999999999999998877653

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=95.98  E-value=0.045  Score=49.16  Aligned_cols=130  Identities=19%  Similarity=0.214  Sum_probs=87.1

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecC-CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDC-INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~-l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      ++++.+-.++.++.++.++.+. .++|++|.=..+ +.. . .+.++.+++. .+.|+.++.-.. .|      . ++  
T Consensus         2 ~li~a~D~~~~~~~~~~~~~~~-~~~diie~G~p~~~~~-g-~~~i~~ir~~~~~~~i~~~~~~~-~~------~-~~--   68 (211)
T 3f4w_A            2 KLQLALDELTLPEAMVFMDKVV-DDVDIIEVGTPFLIRE-G-VNAIKAIKEKYPHKEVLADAKIM-DG------G-HF--   68 (211)
T ss_dssp             EEEEEECSCCHHHHHHHHHHHG-GGCSEEEECHHHHHHH-T-THHHHHHHHHCTTSEEEEEEEEC-SC------H-HH--
T ss_pred             cEEEEeCCCCHHHHHHHHHHhh-cCccEEEeCcHHHHhc-c-HHHHHHHHHhCCCCEEEEEEEec-cc------h-HH--
Confidence            5889999999999999888874 689999987644 221 1 2467777766 588987765443 11      1 22  


Q ss_pred             HHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           90 ALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        90 ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      .++.+.+.|+|+|=+=....++.+++++ ..++.+.++++..++    |  ++..+.++++.+.|+|++.+-
T Consensus        69 ~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~----~--~t~~~~~~~~~~~g~d~i~v~  134 (211)
T 3f4w_A           69 ESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMIC----V--DDLPARVRLLEEAGADMLAVH  134 (211)
T ss_dssp             HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTT----C--SSHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecC----C--CCHHHHHHHHHHcCCCEEEEc
Confidence            3678889999999886544433334444 344567888886443    2  123556677778899998653

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.98  E-value=0.0093  Score=55.26  Aligned_cols=40  Identities=25%  Similarity=0.265  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.++++.|||+|.+|.+++..|.+.|.+|++++|++++
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~   54 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKA   54 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            3566889999999999999999999999999999999987

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=95.96  E-value=0.099  Score=48.02  Aligned_cols=120  Identities=20%  Similarity=0.240  Sum_probs=69.7

Q ss_pred             EEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      |+.-+...+.+++...++.+.+.|++++|+|..   .....+.++.+.+..+ .+++-.      |.. .+.    +-.+
T Consensus        28 ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k---~~~~~~~i~~l~~~~~-~~~iga------gtv-l~~----d~~~   92 (225)
T 1mxs_A           28 ILPVITIAREEDILPLADALAAGGIRTLEVTLR---SQHGLKAIQVLREQRP-ELCVGA------GTV-LDR----SMFA   92 (225)
T ss_dssp             EEEEECCSCGGGHHHHHHHHHHTTCCEEEEESS---STHHHHHHHHHHHHCT-TSEEEE------ECC-CSH----HHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecC---CccHHHHHHHHHHhCc-ccEEee------CeE-eeH----HHHH
Confidence            445556778898988899999999999999953   2222334444554442 222211      221 233    2345


Q ss_pred             HHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310           93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      .+++.|+|+|=.- ..+.+..+   ..+..+..+|...|    ||  +|    +.++.+.|+|++|+  .|
T Consensus        93 ~A~~aGAd~v~~p-~~d~~v~~---~~~~~g~~~i~G~~----t~--~e----~~~A~~~Gad~vk~--FP  147 (225)
T 1mxs_A           93 AVEAAGAQFVVTP-GITEDILE---AGVDSEIPLLPGIS----TP--SE----IMMGYALGYRRFKL--FP  147 (225)
T ss_dssp             HHHHHTCSSEECS-SCCHHHHH---HHHHCSSCEECEEC----SH--HH----HHHHHTTTCCEEEE--TT
T ss_pred             HHHHCCCCEEEeC-CCCHHHHH---HHHHhCCCEEEeeC----CH--HH----HHHHHHCCCCEEEE--cc
Confidence            6788899998432 11111111   22334566665555    34  33    35566889999999  55

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=95.95  E-value=0.0077  Score=60.30  Aligned_cols=42  Identities=33%  Similarity=0.264  Sum_probs=37.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +.+++|+|+|+|++|++++..+..+|++|++++|+.++.+.+
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~  211 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV  211 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            468899999999999999999999999999999998876543

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=95.95  E-value=0.0082  Score=56.26  Aligned_cols=45  Identities=29%  Similarity=0.358  Sum_probs=39.9

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ..++||++||.|+ ||.|++++..|.+.|++|++++|+.++.++++
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~   68 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIA   68 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4578999999986 78999999999999999999999998887653

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=95.95  E-value=0.0076  Score=56.34  Aligned_cols=44  Identities=27%  Similarity=0.348  Sum_probs=39.2

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+++|++||-|+ ||.|++++..|.+.|++|++++|+.++++++
T Consensus        16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   60 (266)
T 4egf_A           16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAA   60 (266)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4578999999985 8899999999999999999999998887664

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.95  E-value=0.039  Score=54.80  Aligned_cols=112  Identities=14%  Similarity=0.205  Sum_probs=70.3

Q ss_pred             cCCCceEeecCcccHHHHHHHhc--CCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHH
Q 015310          264 VNYNGIYVPMFVDDLKKFFSTYS--SPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEA  341 (409)
Q Consensus       264 ~gl~~~y~~~~~~~l~~~~~~~~--~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G  341 (409)
                      -|+|..=..+++.+.++|++.++  .+.|.|+|.-==-....+..++++-..    ....            =+|-|-.|
T Consensus       107 agid~~pi~ldv~~~dE~v~~vk~~~p~f~~i~lED~~~p~af~il~r~r~~----~~Ip------------vf~DDiqG  170 (388)
T 1vl6_A          107 ADIDAFPICLSESEEEKIISIVKSLEPSFGGINLEDIGAPKCFRILQRLSEE----MNIP------------VFHDDQQG  170 (388)
T ss_dssp             HCCEEEEEECSCCCHHHHHHHHHHTGGGCSEEEECSCCTTHHHHHHHHHHHH----CSSC------------EEEHHHHH
T ss_pred             cCCceEeEEeCCCCHHHHHHHHHHcCCcceEeCHhhcCCHHHHHHHHHhhhh----cCcc------------eecccccc
Confidence            46774444456677888876663  367888865331123344444433322    1111            13344433


Q ss_pred             --------HHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC----hHHH
Q 015310          342 --------SITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID----FEQS  404 (409)
Q Consensus       342 --------~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~----~~ka  404 (409)
                              ++.+++  +.           +..++..+++|+|||-+|.+++..|..+|+ +|+++||+    .+|+
T Consensus       171 TasV~lAal~~A~~--i~-----------g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~  233 (388)
T 1vl6_A          171 TAVVVSAAFLNALK--LT-----------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDP  233 (388)
T ss_dssp             HHHHHHHHHHHHHH--HH-----------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSG
T ss_pred             HHHHHHHHHHHHHH--Hh-----------CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCc
Confidence                    233332  11           235778899999999999999999999999 89999998    6654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.94  E-value=0.022  Score=56.12  Aligned_cols=56  Identities=29%  Similarity=0.452  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCC-CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGS-PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ++|.+..++..+.+.+         . +++||++.|.|.|.+|+.++..|..+|++|.+++++.++
T Consensus       154 g~Gv~~~~~~~~~~~G---------~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          154 AVGVFEAMKATVAHRG---------LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             HHHHHHHHHHHHHHTT---------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHHHHHHHHHHhcC---------CCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            4677777777665322         4 689999999999999999999999999998899998765

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=95.94  E-value=0.01  Score=55.72  Aligned_cols=43  Identities=21%  Similarity=0.207  Sum_probs=38.0

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~   62 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTT   62 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467899999985 8899999999999999999999998876654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.90  E-value=0.011  Score=55.52  Aligned_cols=43  Identities=28%  Similarity=0.319  Sum_probs=38.1

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~   72 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEEL   72 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHH
Confidence            367899999985 8899999999999999999999998877654

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=95.89  E-value=0.0065  Score=57.14  Aligned_cols=44  Identities=34%  Similarity=0.460  Sum_probs=39.4

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+++||++||-|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~   66 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQT   66 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3578999999986 8899999999999999999999999887765

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=95.88  E-value=0.0063  Score=57.36  Aligned_cols=43  Identities=28%  Similarity=0.469  Sum_probs=38.3

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +++||+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   73 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAV   73 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            478999999985 8899999999999999999999998776654

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=95.87  E-value=0.0085  Score=56.28  Aligned_cols=43  Identities=28%  Similarity=0.341  Sum_probs=38.6

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+++|++||-|+ ||.|++++..|++.|++|++++|+.++++++
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   68 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGI   68 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            478899999986 8899999999999999999999999887765

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.86  E-value=0.0081  Score=57.28  Aligned_cols=44  Identities=23%  Similarity=0.265  Sum_probs=39.0

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   81 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSV   81 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            4578899999986 7899999999999999999999998887654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=95.84  E-value=0.012  Score=55.74  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=37.8

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .+++|.+||.|+ ||.|++++..|++.|++|++++|+.++.++++
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   69 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVA   69 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            356899999985 88999999999999999999999998877653

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=95.82  E-value=0.011  Score=55.63  Aligned_cols=42  Identities=21%  Similarity=0.152  Sum_probs=35.8

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +++|++||-|+ ||.|++++..|++.|++|++++|+.++++++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   64 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAA   64 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            56899999996 8899999999999999999999999887765

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.81  E-value=0.02  Score=57.68  Aligned_cols=42  Identities=26%  Similarity=0.379  Sum_probs=38.3

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      ..+.|++++|+|.|.+|++++..|..+|++|++++|++.++.
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~  257 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICAL  257 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhH
Confidence            467899999999999999999999999999999999987653

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.78  E-value=0.014  Score=54.65  Aligned_cols=44  Identities=23%  Similarity=0.411  Sum_probs=38.7

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~   71 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEET   71 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHH
Confidence            3578899999985 7899999999999999999999998877654

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=95.76  E-value=0.014  Score=55.17  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=38.6

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~   66 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKAT   66 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            3578899999996 7899999999999999999999998876654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=95.70  E-value=0.0099  Score=55.93  Aligned_cols=44  Identities=20%  Similarity=0.297  Sum_probs=37.0

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .+.+|++||.|+ ||.|++++..|.+.|++|++++|+.++.++++
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~   69 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETA   69 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            356889999986 78999999999999999999999998877653

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=95.69  E-value=0.011  Score=55.66  Aligned_cols=43  Identities=30%  Similarity=0.443  Sum_probs=38.4

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+++++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV   68 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            367899999997 8899999999999999999999998877654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.67  E-value=0.011  Score=56.37  Aligned_cols=43  Identities=23%  Similarity=0.346  Sum_probs=38.0

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+++|++||.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~   66 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEET   66 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            367899999985 8899999999999999999999998877654

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=95.56  E-value=0.16  Score=46.61  Aligned_cols=108  Identities=10%  Similarity=0.143  Sum_probs=69.6

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEe-cC--CCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DC--INNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D~--l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (409)
                      +|+-+|..-+...+.++++.+.+.|+|++|+|+ |-  ..+.+. .+.++.+++.++.|+.+.+=..        +++.|
T Consensus         6 ~i~psila~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~--------dp~~~   77 (230)
T 1tqj_A            6 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV--------EPEKY   77 (230)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS--------SGGGT
T ss_pred             EEEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc--------CHHHH
Confidence            589999999999999999998888999999998 21  112221 2466777776778888777652        12333


Q ss_pred             HHHHHHHHHcCCcEEEEecc--CccchHHHHHhccCCCcEEEEec
Q 015310           88 LEALHLAEDLGADYVDFELK--VASNILGKQYSSHQSGTRFIVSC  130 (409)
Q Consensus        88 ~~ll~~~~~~g~dyvDiEl~--~~~~~~~~l~~~~~~~~kiI~S~  130 (409)
                         ++.+.+.|+|+|=+=..  ..+...+.+...++.+.++.+|.
T Consensus        78 ---i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~  119 (230)
T 1tqj_A           78 ---VEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVL  119 (230)
T ss_dssp             ---HHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEE
T ss_pred             ---HHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEE
Confidence               35667778888766544  22222221222334566666666

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.55  E-value=0.011  Score=58.62  Aligned_cols=42  Identities=24%  Similarity=0.228  Sum_probs=37.9

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +.+++|+|+|+|.+|+.++..+..+|++|++++|+.++.+.+
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~  223 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQV  223 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            467899999999999999999999999999999998876554

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=95.53  E-value=0.58  Score=45.54  Aligned_cols=196  Identities=14%  Similarity=0.130  Sum_probs=118.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEE-------ecCC---CCCCChhHHHHHHhc-CCCcEEEE-eccCCCCCCCCCCHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIR-------LDCI---NNFQPGKDLEIILTK-KPLPVLIV-YRPKWAGGLYEGDEHKRL   88 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElR-------lD~l---~~~~~~~~l~~l~~~-~~~PiI~T-~R~~~eGG~~~~~~~~~~   88 (409)
                      +.++.++-++.+.+.|+|.||+=       .|.-   ...++.+.++.+++. .+.|+.+- ++.  .     ..    .
T Consensus        28 ~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~--~-----~~----~   96 (345)
T 1nvm_A           28 TLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPG--I-----GS----V   96 (345)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBT--T-----BC----H
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCC--c-----cc----H
Confidence            44666666777777899999983       1211   111234556566554 35565543 431  1     11    2


Q ss_pred             HHHHHHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec--C
Q 015310           89 EALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV--N  164 (409)
Q Consensus        89 ~ll~~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~--~  164 (409)
                      +.++.+.+.|++.|-|=....+ +...+.+ .+++.+..++.+.=+...++ .+.+.++.+.+.++|++++-++=+.  .
T Consensus        97 ~~i~~a~~aGvd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~-~e~~~~ia~~~~~~Ga~~i~l~DT~G~~  175 (345)
T 1nvm_A           97 HDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIP-AEKLAEQGKLMESYGATCIYMADSGGAM  175 (345)
T ss_dssp             HHHHHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSC-HHHHHHHHHHHHHHTCSEEEEECTTCCC
T ss_pred             HHHHHHHhCCcCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCC-HHHHHHHHHHHHHCCCCEEEECCCcCcc
Confidence            4678888899998877543321 2223333 34556888888876654443 5789999999999999998888433  3


Q ss_pred             CHhHHHHHHHHhcc-C--CCCEEEE------EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhhc
Q 015310          165 DITEIARIFQLLSH-C--QVPIIAY------SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKVE  232 (409)
Q Consensus       165 ~~~D~~~ll~~~~~-~--~~p~i~~------~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~~  232 (409)
                      ++.++.++++.+.+ .  +.| |.+      +||-   ..-+..-..|....=+++.. +-..||++++++...++..
T Consensus       176 ~P~~v~~lv~~l~~~~~~~~p-i~~H~Hn~~G~av---An~laA~~aGa~~vd~tv~GlG~~aGN~~le~lv~~L~~~  249 (345)
T 1nvm_A          176 SMNDIRDRMRAFKAVLKPETQ-VGMHAHHNLSLGV---ANSIVAVEEGCDRVDASLAGMGAGAGNAPLEVFIAVAERL  249 (345)
T ss_dssp             CHHHHHHHHHHHHHHSCTTSE-EEEECBCTTSCHH---HHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCce-EEEEECCCccHHH---HHHHHHHHcCCCEEEecchhccCCccCcCHHHHHHHHHhc
Confidence            58888888877654 3  344 455      4443   33333333443333333322 2357999999998777643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.47  E-value=0.032  Score=56.49  Aligned_cols=42  Identities=31%  Similarity=0.449  Sum_probs=38.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      ..+.||+++|+|.|..|++++..|..+|++|++++|++.++.
T Consensus       243 ~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~  284 (464)
T 3n58_A          243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICAL  284 (464)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHH
T ss_pred             CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhh
Confidence            568899999999999999999999999999999999987653

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.45  E-value=0.019  Score=54.50  Aligned_cols=42  Identities=17%  Similarity=0.166  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEEech---hHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          364 SPLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       364 ~~~~~~~vlvlGaG---Gaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      ..+++|++||.|++   |.|++++..|++.|++|++++|+.+..+
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~   70 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKK   70 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence            35789999999985   9999999999999999999999965433

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=95.43  E-value=0.067  Score=48.59  Aligned_cols=130  Identities=12%  Similarity=0.043  Sum_probs=80.9

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHH
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRL   88 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~   88 (409)
                      ++++|+.+-.++.++.++.++.. ..++|++|+-+-+.-... .+.++.+++. .+.|+++-+-.- +.      .+.  
T Consensus         6 ~~~lilalD~~~~~~~~~~~~~~-~~~vd~ie~g~~~~~~~G-~~~i~~lr~~~~~~~i~ld~~l~-d~------p~~--   74 (218)
T 3jr2_A            6 KPMIQIALDQTNLTDAVAVASNV-ASYVDVIEVGTILAFAEG-MKAVSTLRHNHPNHILVCDMKTT-DG------GAI--   74 (218)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHHHHHT-THHHHHHHHHCTTSEEEEEEEEC-SC------HHH--
T ss_pred             CCCeEEEeCCCCHHHHHHHHHHh-cCCceEEEeCcHHHHhcC-HHHHHHHHHhCCCCcEEEEEeec-cc------HHH--
Confidence            68899999999999999988885 668999998754432112 2357777766 467887765433 21      222  


Q ss_pred             HHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEE-eccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           89 EALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIV-SCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        89 ~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~-S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                       ..+.+.+.|+|+|=+-....++.+++++ ..++.+.+.++ -.--  .||  +++.+    +.+.|+|.+++
T Consensus        75 -~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~--~T~--~~~~~----~~~~g~d~v~~  138 (218)
T 3jr2_A           75 -LSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGN--WTM--QDAKA----WVDLGITQAIY  138 (218)
T ss_dssp             -HHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSS--CCH--HHHHH----HHHTTCCEEEE
T ss_pred             -HHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeec--CCH--HHHHH----HHHcCccceee
Confidence             4477888999999887655443333333 23445666654 2111  233  33333    33458887776

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=95.39  E-value=0.021  Score=53.79  Aligned_cols=43  Identities=21%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeC-ChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR-~~~ka~~l  407 (409)
                      ++.+|++||-|+ ||.|++++..|++.|++|++++| +.++.+++
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~   66 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTV   66 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHH
Confidence            577899999985 88999999999999999999999 55555543

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=95.39  E-value=0.16  Score=46.85  Aligned_cols=123  Identities=15%  Similarity=0.212  Sum_probs=76.8

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      .|+-.+...+.+++..-++.+...|++++|+|+.--   +..+.++.+++..+..+|= .     |..  .+.    +-.
T Consensus        35 ~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~---~a~e~I~~l~~~~~~~~iG-a-----GTV--lt~----~~a   99 (232)
T 4e38_A           35 KVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSD---AAVEAIRLLRQAQPEMLIG-A-----GTI--LNG----EQA   99 (232)
T ss_dssp             CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTST---THHHHHHHHHHHCTTCEEE-E-----ECC--CSH----HHH
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCC---CHHHHHHHHHHhCCCCEEe-E-----CCc--CCH----HHH
Confidence            455667888899999999999999999999998632   2234566666555434442 1     222  222    234


Q ss_pred             HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015310           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND  165 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~  165 (409)
                      +.+++.|+++|=.- ....+..+   ..++.+..+|--..    ||+  |    +.++.++|+|++|+  +|.+
T Consensus       100 ~~Ai~AGA~fIvsP-~~~~~vi~---~~~~~gi~~ipGv~----Tpt--E----i~~A~~~Gad~vK~--FPa~  157 (232)
T 4e38_A          100 LAAKEAGATFVVSP-GFNPNTVR---ACQEIGIDIVPGVN----NPS--T----VEAALEMGLTTLKF--FPAE  157 (232)
T ss_dssp             HHHHHHTCSEEECS-SCCHHHHH---HHHHHTCEEECEEC----SHH--H----HHHHHHTTCCEEEE--CSTT
T ss_pred             HHHHHcCCCEEEeC-CCCHHHHH---HHHHcCCCEEcCCC----CHH--H----HHHHHHcCCCEEEE--CcCc
Confidence            57788999998421 11222222   23445788877654    553  3    34456889999998  5544

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=95.33  E-value=0.012  Score=55.49  Aligned_cols=44  Identities=34%  Similarity=0.396  Sum_probs=36.3

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCCh-HHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-EQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~-~ka~~l  407 (409)
                      ..+++|++||.|+ ||.|++++..|.+.|++|++++|+. ++.+++
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~   64 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSL   64 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHH
Confidence            3567899999985 8899999999999999999999998 666544

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.32  E-value=0.011  Score=61.90  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=33.4

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus       324 L~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          324 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            567899999999999999999999999 999999874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.31  E-value=0.015  Score=51.54  Aligned_cols=41  Identities=27%  Similarity=0.277  Sum_probs=36.2

Q ss_pred             CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|.| +||.|++++..+...|++|++++|+.++.+.+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~   79 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML   79 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999 59999999999999999999999998876544

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.30  E-value=0.014  Score=53.13  Aligned_cols=40  Identities=20%  Similarity=0.173  Sum_probs=36.6

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEE-EeCChHHHHhhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVI-FDIDFEQSLLLL  408 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v-~nR~~~ka~~la  408 (409)
                      .++.|||+|.+|.+++..|.+.|.+|++ ++|+.++++.++
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~   64 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVT   64 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHH
Confidence            5799999999999999999999998888 999999988764

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=95.30  E-value=0.88  Score=46.21  Aligned_cols=209  Identities=13%  Similarity=0.075  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHH
Q 015310           23 EQVLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLA   94 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~   94 (409)
                      ++.++-++.+.+.|.|.+|.-    .|.   +-..++.+.++.+++. .+.++..-+|..+-=|.....++-..+.++.+
T Consensus        30 ~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~~a  109 (464)
T 2nx9_A           30 DDMLPIAQQLDQIGYWSLECWGGATFDSCIRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVERA  109 (464)
T ss_dssp             GGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTTCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEeCcCccccchhhccCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHHHHH
Confidence            444444555566799999986    231   1123445566666653 35666666886655565555665566778899


Q ss_pred             HHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEEEeccCCCCCC-CHhHHHHHHHHHHHcCCCEEEEEeecC--CHhHH
Q 015310           95 EDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFIVSCNLDCETP-SEEDLGYLVSRMQATGADIIKLVFSVN--DITEI  169 (409)
Q Consensus        95 ~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI~S~H~f~~tp-~~~~l~~~~~~~~~~gaDivKia~~~~--~~~D~  169 (409)
                      .+.|++.|-|=....+ +.+...+ .+++.+.++.++.|.+..++ +.+.+.+.++++.+.|||++-|+=|.-  ++.++
T Consensus       110 ~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v  189 (464)
T 2nx9_A          110 VKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPYAA  189 (464)
T ss_dssp             HHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHH
T ss_pred             HhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHH
Confidence            9999999887544322 2222333 45667888888888766666 557799999999999999998875443  58888


Q ss_pred             HHHHHHhcc-CCCCEEEEE---cCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhhc
Q 015310          170 ARIFQLLSH-CQVPIIAYS---VGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKVE  232 (409)
Q Consensus       170 ~~ll~~~~~-~~~p~i~~~---MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~~  232 (409)
                      .++.+.+.+ .+.|+ .+-   ..-++..+=+..-..|....=+++.. +--.||.+++++...++..
T Consensus       190 ~~lv~~l~~~~~~~i-~~H~Hnd~GlAvAN~laAv~AGa~~VD~ti~g~gertGN~~lE~lv~~L~~~  256 (464)
T 2nx9_A          190 EELVSTLKKQVDVEL-HLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMSGTYGHPATESLVATLQGT  256 (464)
T ss_dssp             HHHHHHHHHHCCSCE-EEEECCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSCCBHHHHHHHHTTS
T ss_pred             HHHHHHHHHhcCCeE-EEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCcCHHHHHHHHHHHhc
Confidence            887777543 35553 332   23333333333333344333333321 1237999999988777653

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=95.27  E-value=0.43  Score=43.33  Aligned_cols=85  Identities=12%  Similarity=0.189  Sum_probs=56.9

Q ss_pred             eeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEe-c--CCCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHH
Q 015310           11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-D--CINNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHK   86 (409)
Q Consensus        11 ~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D--~l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~   86 (409)
                      .+|+-.|..-+.+++.+.++.+.+.|+|++|+|+ |  +..+... .+.++++++.++.|+.+.+--.        +.+ 
T Consensus        11 ~~i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vn--------d~~-   81 (230)
T 1rpx_A           11 IIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIV--------EPD-   81 (230)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESS--------SHH-
T ss_pred             eEEEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEec--------CHH-
Confidence            3577788999998888888888888999999997 4  2232221 2456677666677877766321        233 


Q ss_pred             HHHHHHHHHHcCCcEEEEec
Q 015310           87 RLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        87 ~~~ll~~~~~~g~dyvDiEl  106 (409)
                        +.++.+.+.|+|+|=+=.
T Consensus        82 --~~v~~~~~~Gad~v~vh~   99 (230)
T 1rpx_A           82 --QRVPDFIKAGADIVSVHC   99 (230)
T ss_dssp             --HHHHHHHHTTCSEEEEEC
T ss_pred             --HHHHHHHHcCCCEEEEEe
Confidence              344556778888875443

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=95.26  E-value=0.02  Score=53.82  Aligned_cols=44  Identities=16%  Similarity=0.127  Sum_probs=37.9

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~   84 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSV   84 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHH
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            3467899999986 7899999999999999999999998876654

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=95.24  E-value=0.32  Score=46.18  Aligned_cols=149  Identities=17%  Similarity=0.175  Sum_probs=91.4

Q ss_pred             EeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCh-hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHH---HHH
Q 015310           15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHK---RLE   89 (409)
Q Consensus        15 v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~---~~~   89 (409)
                      +=+...+.+++.    .+.+.|||.|||+-.+.. ...|. ..++.+++..++|+-+-+|+.  ||-|-.+++|   ..+
T Consensus        42 lEvc~~s~~~a~----~A~~gGAdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPR--gGdF~Ys~~E~~~M~~  115 (287)
T 3iwp_A           42 MEVCVDSVESAV----NAERGGADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPR--GGDFLYSDREIEVMKA  115 (287)
T ss_dssp             EEEEESSHHHHH----HHHHHTCSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSS--SSCSCCCHHHHHHHHH
T ss_pred             EEEEeCCHHHHH----HHHHhCCCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecC--CCCcccCHHHHHHHHH
Confidence            344456666654    445679999999955433 33332 356666667799999999975  6666667644   344


Q ss_pred             HHHHHHHcCCcEEEEecc-----CccchHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310           90 ALHLAEDLGADYVDFELK-----VASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus        90 ll~~~~~~g~dyvDiEl~-----~~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      -++.+.+.|+|.|=+=.-     .+.+..++|+... ++.  =++||- |+.+++..   +-++...++|.|-|=-.-..
T Consensus       116 dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a-~~l--~vTFHRAFD~~~d~~---~Ale~Li~lGvdrILTSG~~  189 (287)
T 3iwp_A          116 DIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAIC-RPL--PVTFHRAFDMVHDPM---AALETLLTLGFERVLTSGCD  189 (287)
T ss_dssp             HHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHH-TTS--CEEECGGGGGCSCHH---HHHHHHHHHTCSEEEECTTS
T ss_pred             HHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHc-CCC--cEEEECchhccCCHH---HHHHHHHHcCCCEEECCCCC
Confidence            556778889999877531     2334556666432 233  357886 88887654   44556666687655444433


Q ss_pred             CCHhHHHHHHHH
Q 015310          164 NDITEIARIFQL  175 (409)
Q Consensus       164 ~~~~D~~~ll~~  175 (409)
                      .+..+-+.+++-
T Consensus       190 ~~a~~Gl~~Lk~  201 (287)
T 3iwp_A          190 SSALEGLPLIKR  201 (287)
T ss_dssp             SSTTTTHHHHHH
T ss_pred             CChHHhHHHHHH
Confidence            444444444443

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.22  E-value=0.033  Score=52.75  Aligned_cols=40  Identities=30%  Similarity=0.521  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..++||++||.|+ ||.|++++..|.+.|++|++++|+.++
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG   83 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            3578999999996 889999999999999999999998654

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=95.14  E-value=0.014  Score=54.38  Aligned_cols=42  Identities=24%  Similarity=0.246  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      .++++|++||.|+ ||.|++++..|.+.|++|++++|+.++..
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~   65 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASV   65 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH
Confidence            4567899999996 88999999999999999999999976643

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.14  E-value=0.011  Score=58.15  Aligned_cols=35  Identities=23%  Similarity=0.450  Sum_probs=32.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~  401 (409)
                      ++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus       117 ~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          117 KNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             hCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            46799999999999999999999999 999999874

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=95.11  E-value=0.023  Score=53.19  Aligned_cols=44  Identities=30%  Similarity=0.433  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeC-ChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR-~~~ka~~l  407 (409)
                      .++++|++||.|+ ||.|++++..|.+.|++|++..| +.++.+++
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~   69 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEV   69 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHH
Confidence            3578899999986 88999999999999999988888 66655544

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.08  E-value=0.02  Score=52.64  Aligned_cols=39  Identities=21%  Similarity=0.297  Sum_probs=35.5

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      .+++|++|||+|+|.+|...+..|.+.|++|+|++.+..
T Consensus        27 l~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~   65 (223)
T 3dfz_A           27 LDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVS   65 (223)
T ss_dssp             ECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCC
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            468899999999999999999999999999999998653

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=95.08  E-value=0.024  Score=52.47  Aligned_cols=44  Identities=34%  Similarity=0.465  Sum_probs=37.3

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeC-ChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR-~~~ka~~l  407 (409)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.| +.++.+++
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~   62 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEV   62 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHH
Confidence            4578899999996 78999999999999999999999 77665543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.08  E-value=0.024  Score=52.93  Aligned_cols=43  Identities=26%  Similarity=0.262  Sum_probs=36.0

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCC-hHHHHh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-FEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~-~~ka~~  406 (409)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+ .++.+.
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~   69 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADA   69 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence            4578999999986 889999999999999999999994 444443

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=95.03  E-value=0.02  Score=53.74  Aligned_cols=42  Identities=24%  Similarity=0.244  Sum_probs=36.0

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .++ |++||.|+ ||.|++++..|.+.|++|++++|+.++.+++
T Consensus        19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~   61 (272)
T 2nwq_A           19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQAL   61 (272)
T ss_dssp             --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            455 88999986 7899999999999999999999998887665

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=95.02  E-value=0.73  Score=42.04  Aligned_cols=143  Identities=19%  Similarity=0.157  Sum_probs=89.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .+.+++.+.++++.+.+++.|     +..... .....+.++..+++ +.|+=.-+.|-   .+.+.+..-.+.|++.|+
T Consensus        16 ~t~~~i~~l~~~a~~~~~~aV-----cv~p~~-v~~~~~~l~~~~v~-v~~vigFP~G~---~~~~~k~~e~~~Ai~~GA   85 (220)
T 1ub3_A           16 ATLEEVAKAAEEALEYGFYGL-----CIPPSY-VAWVRARYPHAPFR-LVTVVGFPLGY---QEKEVKALEAALACARGA   85 (220)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEE-----ECCGGG-HHHHHHHCTTCSSE-EEEEESTTTCC---SCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCEE-----EECHHH-HHHHHHHhCCCCce-EEEEecCCCCC---CchHHHHHHHHHHHHcCC
Confidence            467888888888888888888     222111 11222233333444 34442333333   234556666789999999


Q ss_pred             cEEEEeccCcc----------chHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe----ecC
Q 015310          100 DYVDFELKVAS----------NILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF----SVN  164 (409)
Q Consensus       100 dyvDiEl~~~~----------~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~----~~~  164 (409)
                      |-||+=++...          +.+..+.. .++...|+|+-.-.    ++.+++....+-+.+.|||++|--+    -..
T Consensus        86 devd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~----l~~e~i~~a~~ia~eaGADfVKTsTGf~~~ga  161 (220)
T 1ub3_A           86 DEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGY----FSPEEIARLAEAAIRGGADFLKTSTGFGPRGA  161 (220)
T ss_dssp             SEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGG----SCHHHHHHHHHHHHHHTCSEEECCCSSSSCCC
T ss_pred             CEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCC----CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCC
Confidence            99999766531          12233332 34457888876543    3467888888889999999999884    233


Q ss_pred             CHhHHHHHHHHh
Q 015310          165 DITEIARIFQLL  176 (409)
Q Consensus       165 ~~~D~~~ll~~~  176 (409)
                      +.+|+..+.+..
T Consensus       162 t~~dv~~m~~~v  173 (220)
T 1ub3_A          162 SLEDVALLVRVA  173 (220)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhh
Confidence            778887666554

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.02  E-value=0.034  Score=52.77  Aligned_cols=37  Identities=27%  Similarity=0.534  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..++||++||.|+ ||.|++++..|++.|++|++++|+
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   61 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVC   61 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            3578999999996 789999999999999999999887

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=95.01  E-value=0.023  Score=54.97  Aligned_cols=42  Identities=21%  Similarity=0.240  Sum_probs=36.7

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEe-CChHHHHhh
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~n-R~~~ka~~l  407 (409)
                      +++|++||.|+ ||.|++++..|++.|++|++++ |+.++++++
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANAL   87 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            67899999985 8899999999999999999999 998877654

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.01  E-value=0.031  Score=53.62  Aligned_cols=42  Identities=17%  Similarity=0.246  Sum_probs=38.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      +..++.|||+|-+|++++..|.+.|.+|+++||+.++++.+.
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~   61 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV   61 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            446899999999999999999999999999999999988764

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.00  E-value=0.048  Score=55.01  Aligned_cols=42  Identities=31%  Similarity=0.481  Sum_probs=38.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      ..+.|++++|+|.|.+|++++..|..+|++|+++++++.++.
T Consensus       207 ~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~  248 (436)
T 3h9u_A          207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINAL  248 (436)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             CcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhH
Confidence            567899999999999999999999999999999999987764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=94.99  E-value=0.036  Score=52.18  Aligned_cols=43  Identities=23%  Similarity=0.288  Sum_probs=36.3

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeC-ChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR-~~~ka~~l  407 (409)
                      .+++|++||.|+ ||.|++++..|.+.|++|++++| +.++.+++
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~   70 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPV   70 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHH
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHH
Confidence            467899999996 88999999999999999999885 76665544

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=94.95  E-value=0.018  Score=53.54  Aligned_cols=41  Identities=24%  Similarity=0.263  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~   58 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP   58 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh
Confidence            4577899999996 8899999999999999999999986654

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=94.93  E-value=0.035  Score=52.02  Aligned_cols=44  Identities=27%  Similarity=0.359  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeC-ChHHHHhh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR-~~~ka~~l  407 (409)
                      ..+++|++||.|+ ||.|++++..|++.|++|+++.| +.++.+++
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~   72 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAV   72 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence            3578999999996 78999999999999999888754 45555543

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=94.92  E-value=0.023  Score=54.93  Aligned_cols=40  Identities=25%  Similarity=0.280  Sum_probs=34.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~-G~-~i~v~nR~~~ka~~la  408 (409)
                      ..++++|+|+|++|++.+.+|... +. +|+|+||+  ++++++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la  161 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEIL  161 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHH
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHH
Confidence            357999999999999999999874 66 89999999  776664

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.92  E-value=0.033  Score=54.84  Aligned_cols=42  Identities=17%  Similarity=0.305  Sum_probs=38.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ++.++.|||.|-+|++++..|.+.|.+|+++||+.++++.+.
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~   62 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALE   62 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            467899999999999999999999999999999999988764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.86  E-value=0.031  Score=57.38  Aligned_cols=42  Identities=31%  Similarity=0.502  Sum_probs=38.3

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .+.|++++|+|+|++|+.++..|..+|++|++++|++++++.
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~  312 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQ  312 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            467999999999999999999999999999999999888643

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=94.83  E-value=0.15  Score=46.56  Aligned_cols=112  Identities=9%  Similarity=0.136  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCC-CCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015310           24 QVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKW-AGGLYEGDEHKRLEALHLAEDLGADYV  102 (409)
Q Consensus        24 e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~-eGG~~~~~~~~~~~ll~~~~~~g~dyv  102 (409)
                      ++.+.++.+.+.|++.++++       . .+.+..+++..++|++-.+|..- +++..-...   .+.++.+.+.|+|.|
T Consensus        37 ~~~~~a~~~~~~G~~~i~~~-------~-~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~---~~~i~~~~~~Gad~V  105 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRAN-------S-VRDIKEIQAITDLPIIGIIKKDYPPQEPFITAT---MTEVDQLAALNIAVI  105 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEEE-------S-HHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCS---HHHHHHHHTTTCSEE
T ss_pred             hHHHHHHHHHHCCCcEeecC-------C-HHHHHHHHHhCCCCEEeeEcCCCCccccccCCh---HHHHHHHHHcCCCEE
Confidence            45555566667899999874       1 24677787778999975555432 333322222   233556788899999


Q ss_pred             EEeccCc--------cchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEE
Q 015310          103 DFELKVA--------SNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII  157 (409)
Q Consensus       103 DiEl~~~--------~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDiv  157 (409)
                      .+.....        .+.++.+.... ++..++++.|+    +  ++    ..++.+.|+|++
T Consensus       106 ~l~~~~~~~~~~~~~~~~i~~i~~~~-~~~~v~~~~~t----~--~e----a~~a~~~Gad~i  157 (234)
T 1yxy_A          106 AMDCTKRDRHDGLDIASFIRQVKEKY-PNQLLMADIST----F--DE----GLVAHQAGIDFV  157 (234)
T ss_dssp             EEECCSSCCTTCCCHHHHHHHHHHHC-TTCEEEEECSS----H--HH----HHHHHHTTCSEE
T ss_pred             EEcccccCCCCCccHHHHHHHHHHhC-CCCeEEEeCCC----H--HH----HHHHHHcCCCEE
Confidence            8866532        12333333221 36677777763    2  22    556667888887

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=94.81  E-value=0.021  Score=54.07  Aligned_cols=43  Identities=23%  Similarity=0.341  Sum_probs=38.0

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCC---eEEEEeCChHHHHhhh
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGA---RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~---~i~v~nR~~~ka~~la  408 (409)
                      +++|++||.|+ ||.|++++..|.+.|+   +|++++|+.++.++++
T Consensus        31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~   77 (287)
T 3rku_A           31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELK   77 (287)
T ss_dssp             HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHH
Confidence            56899999996 8899999999999887   9999999998887653

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=94.80  E-value=0.038  Score=52.47  Aligned_cols=122  Identities=21%  Similarity=0.302  Sum_probs=77.6

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKL  332 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l  332 (409)
                      .+..++.|+......++-    +++.+.++.+ .++++.|+-|-.|.-.    ++|+   . +.+.+++--. + -|| +
T Consensus        54 ~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~----~id~---~-~i~~~I~p~K-D-VDG-~  122 (281)
T 2c2x_A           54 HADCAKVGITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPK----HLDE---N-AALERVDPAK-D-ADG-L  122 (281)
T ss_dssp             HHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCT----TSCH---H-HHHHHSCGGG-B-TTS-C
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCC----CCCH---H-HHHhhcCccC-C-ccC-C
Confidence            445788999987766653    3566667667 5789999999999732    1211   1 1111111100 0 011 1


Q ss_pred             EEE-------------cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhH-HHHHHHHHHhC--CCeEEE
Q 015310          333 IGY-------------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSR--GARVVI  396 (409)
Q Consensus       333 ~G~-------------NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGa-arai~~aL~~~--G~~i~v  396 (409)
                      +-+             -.--.|++..|++.             +.+++|++++|+|+|.+ |+.++.-|...  |+.|++
T Consensus       123 ~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~-------------~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv  189 (281)
T 2c2x_A          123 HPTNLGRLVLGTPAPLPCTPRGIVHLLRRY-------------DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTL  189 (281)
T ss_dssp             CHHHHHHHHHTCCCCCCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEE
T ss_pred             ChhhHHHHhCCCCCCCCChHHHHHHHHHHc-------------CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEE
Confidence            100             11235666666542             25789999999999984 99999999999  789999


Q ss_pred             EeCChHH
Q 015310          397 FDIDFEQ  403 (409)
Q Consensus       397 ~nR~~~k  403 (409)
                      ++|+...
T Consensus       190 ~h~~t~~  196 (281)
T 2c2x_A          190 CHTGTRD  196 (281)
T ss_dssp             ECTTCSC
T ss_pred             EECchhH
Confidence            9887543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=94.78  E-value=0.042  Score=52.68  Aligned_cols=124  Identities=18%  Similarity=0.252  Sum_probs=77.4

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCC--
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDG--  330 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g--  330 (409)
                      ....+++|+......++-    +++.+.+..+ .++.+.|+-|-.|.-..-  -+|   +. +.+.+++--. + -||  
T Consensus        57 ~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~--~id---~~-~i~~~I~p~K-D-VDG~h  128 (301)
T 1a4i_A           57 LKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSEN--SIN---TE-EVINAIAPEK-D-VDGLT  128 (301)
T ss_dssp             HHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSS--CCC---HH-HHHHTSCGGG-B-TTCCS
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCC--ccC---HH-HHHhccCCCC-C-ccCCC
Confidence            345788999987766653    3677777777 578999999999973110  011   11 1111111100 0 011  


Q ss_pred             -----eE-EEE------cCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEE
Q 015310          331 -----KL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIF  397 (409)
Q Consensus       331 -----~l-~G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~  397 (409)
                           ++ .|.      -.--.|++..|++.             +.+++|++++|+|+|. +|+.++.-|...|+.|+|+
T Consensus       129 p~N~G~l~~g~~~~~~~PcTp~gi~~ll~~~-------------~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~  195 (301)
T 1a4i_A          129 SINAGRLARGDLNDCFIPCTPKGCLELIKET-------------GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTC  195 (301)
T ss_dssp             HHHHHHHHTTCCSSCCCCHHHHHHHHHHHTT-------------TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEE
T ss_pred             hhhHHHHhcCCCCCCccCchHHHHHHHHHHc-------------CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEE
Confidence                 00 010      01235666666532             2578999999999997 7999999999999999999


Q ss_pred             eCChH
Q 015310          398 DIDFE  402 (409)
Q Consensus       398 nR~~~  402 (409)
                      +++..
T Consensus       196 hs~t~  200 (301)
T 1a4i_A          196 HSKTA  200 (301)
T ss_dssp             CTTCS
T ss_pred             ECCcc
Confidence            76543

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=94.77  E-value=0.09  Score=52.79  Aligned_cols=60  Identities=32%  Similarity=0.421  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEeC----------ChHHHHhh
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI----------DFEQSLLL  407 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~nR----------~~~ka~~l  407 (409)
                      ++|.+..++..+.+.+         .+++|++|+|.|.|.+|+.++..|.++|++|+ |.++          +.++..++
T Consensus       198 g~Gv~~~~~~~~~~~g---------~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~  268 (419)
T 3aoe_E          198 GLGALLVLEALAKRRG---------LDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSA  268 (419)
T ss_dssp             HHHHHHHHHHHHHHHT---------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC---------CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHH
Confidence            4677777777665333         57889999999999999999999999999755 9988          66666554

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=94.77  E-value=0.017  Score=53.96  Aligned_cols=42  Identities=29%  Similarity=0.389  Sum_probs=36.2

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ++++|++||.|+ ||.|++++..|.+.|++|++++|+.++.++
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~   73 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEK   73 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            467899999985 789999999999999999999998765543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.76  E-value=0.031  Score=55.89  Aligned_cols=42  Identities=24%  Similarity=0.211  Sum_probs=37.5

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +.+.+|+|+|+|.+|++++..+..+|++|++++|+.++.+.+
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~  229 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQV  229 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence            457899999999999999999999999999999998875543

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.74  E-value=0.037  Score=52.04  Aligned_cols=37  Identities=16%  Similarity=0.225  Sum_probs=34.1

Q ss_pred             CCCCEEEEEec---hhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          366 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       366 ~~~~~vlvlGa---GGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      +++|++||.|+   ||.|++++..|.+.|++|++++|+.+
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   58 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK   58 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            67899999997   69999999999999999999999874

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=94.73  E-value=0.023  Score=55.60  Aligned_cols=40  Identities=35%  Similarity=0.509  Sum_probs=36.2

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..++||++||.|+ ||.|++++..|++.|++|++++|+.++
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            4578999999996 889999999999999999999999764

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=94.61  E-value=0.024  Score=52.41  Aligned_cols=42  Identities=14%  Similarity=0.055  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCC---CeEEEEeCChHHHH
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRG---ARVVIFDIDFEQSL  405 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G---~~i~v~nR~~~ka~  405 (409)
                      ..++++++||.|+ ||.|++++..|.+.|   ++|++++|+.++.+
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~   62 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK   62 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH
Confidence            4578899999985 889999999999999   89999999976544

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=94.57  E-value=0.015  Score=54.35  Aligned_cols=41  Identities=29%  Similarity=0.496  Sum_probs=35.5

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      .++||++||.|+ ||.|++++..|++.|++|++++|+.++.+
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~   66 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA   66 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            467899999996 78999999999999999999999876543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=94.54  E-value=0.051  Score=51.51  Aligned_cols=39  Identities=18%  Similarity=0.172  Sum_probs=34.3

Q ss_pred             CCCCCEEEEEec-hh--HHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          365 PLAGRMFVLAGA-GG--AGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       365 ~~~~~~vlvlGa-GG--aarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      .+++|++||.|+ ||  .|++++..|++.|++|++++|+.+.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~   69 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDAL   69 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            478999999997 34  9999999999999999999999643

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=94.53  E-value=0.052  Score=50.86  Aligned_cols=38  Identities=42%  Similarity=0.581  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..++||++||.|+ ||.|++++..|.+.|++|++++|+.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   65 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD   65 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH
Confidence            4578999999996 7899999999999999999999874

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=94.50  E-value=0.033  Score=53.48  Aligned_cols=36  Identities=47%  Similarity=0.781  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++||++||.|+ ||.|++++..|.+.|++|++++|+
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~   60 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIG   60 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            477899999985 889999999999999999999987

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=94.47  E-value=0.027  Score=51.98  Aligned_cols=40  Identities=15%  Similarity=0.192  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      ..-+|++||.|+ ||.|++++..|.+.|++|++++|+.++.
T Consensus        19 ~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~   59 (251)
T 3orf_A           19 SHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPN   59 (251)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence            345789999996 7899999999999999999999987654

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=94.46  E-value=0.95  Score=44.10  Aligned_cols=92  Identities=14%  Similarity=0.154  Sum_probs=65.0

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCC---------C-C-CCh----hHHHHHHhcCCCcEEEEeccCCC
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCIN---------N-F-QPG----KDLEIILTKKPLPVLIVYRPKWA   76 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~---------~-~-~~~----~~l~~l~~~~~~PiI~T~R~~~e   76 (409)
                      .+++.|.+.+.+++.+.++.+.+.|+|.||+-..+=.         . + ...    +.++.+++..++|+.+-+|..++
T Consensus        59 p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~  138 (350)
T 3b0p_A           59 PIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLE  138 (350)
T ss_dssp             SEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBT
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcC
Confidence            4679999999999999888888889999999985311         0 0 011    22334444468999888886433


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310           77 GGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~dyvDiEl  106 (409)
                      -   ..+.++..++.+.+.+.|+++|.|.-
T Consensus       139 ~---~~~~~~~~~~a~~l~~aG~d~I~V~~  165 (350)
T 3b0p_A          139 G---KETYRGLAQSVEAMAEAGVKVFVVHA  165 (350)
T ss_dssp             T---CCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             c---cccHHHHHHHHHHHHHcCCCEEEEec
Confidence            1   12345677888888999999999853

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.44  E-value=0.051  Score=52.26  Aligned_cols=41  Identities=27%  Similarity=0.301  Sum_probs=36.6

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|.|+ ||.|++++..+...|++|++++|+.++.+.+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~  186 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL  186 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            5789999997 9999999999999999999999998876643

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.43  E-value=0.051  Score=51.48  Aligned_cols=36  Identities=33%  Similarity=0.443  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++||++||.|+ ||.|++++..|.+.|++|+++.|+
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467899999996 889999999999999999999887

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=94.42  E-value=0.034  Score=54.02  Aligned_cols=42  Identities=19%  Similarity=0.196  Sum_probs=37.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++.+
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~  192 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE  192 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHH
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchh
Confidence            457899999999999999999999999999999999865443

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=94.37  E-value=0.04  Score=51.48  Aligned_cols=42  Identities=26%  Similarity=0.259  Sum_probs=33.7

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEE-eCChHHHHhh
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~-nR~~~ka~~l  407 (409)
                      +++|++||-|+ ||.|++++..|.+.|++|++. .|+.++++++
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~   68 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEV   68 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            46899999986 889999999999999988776 6676666554

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=94.36  E-value=0.047  Score=52.35  Aligned_cols=36  Identities=33%  Similarity=0.546  Sum_probs=32.5

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++||++||-|+ ||.|++++..|++.|++|++++|+
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~   79 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLC   79 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence            467899999985 889999999999999999999876

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.34  E-value=0.046  Score=53.48  Aligned_cols=41  Identities=17%  Similarity=0.220  Sum_probs=36.0

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh---HHHHh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF---EQSLL  406 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~---~ka~~  406 (409)
                      ++|++|+|+|+||+|.+++..+...|++|++++|+.   ++.+.
T Consensus       179 ~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  222 (366)
T 2cdc_A          179 LNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTV  222 (366)
T ss_dssp             STTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHH
Confidence            348999999999999999999999999999999988   77543

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=94.30  E-value=0.052  Score=55.48  Aligned_cols=41  Identities=34%  Similarity=0.481  Sum_probs=38.3

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++|++++|+..++
T Consensus       253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~  293 (479)
T 1v8b_A          253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICA  293 (479)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhH
Confidence            46789999999999999999999999999999999998876

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=94.20  E-value=0.023  Score=51.75  Aligned_cols=41  Identities=12%  Similarity=0.111  Sum_probs=35.6

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCC-CeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRG-ARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G-~~i~v~nR~~~ka~~l  407 (409)
                      ..++++|.|+ |+.|++++..|.+.| ++|+++.|+.++++++
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~   64 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP   64 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc
Confidence            4578999995 889999999999999 6999999998876543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=94.19  E-value=0.045  Score=51.33  Aligned_cols=40  Identities=28%  Similarity=0.545  Sum_probs=34.9

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+++|++||.|+ ||.|++++..|.+.|++|++++|+.++
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE   65 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            3467899999985 889999999999999999999998654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=94.19  E-value=0.055  Score=50.73  Aligned_cols=43  Identities=19%  Similarity=0.254  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEec---hhHHHHHHHHHHhCCCeEEEEeCCh--HHHHhh
Q 015310          365 PLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF--EQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa---GGaarai~~aL~~~G~~i~v~nR~~--~ka~~l  407 (409)
                      .+++|++||.|+   +|.|++++..|.+.|++|++++|+.  ++.+++
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l   70 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKL   70 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHH
Confidence            467899999995   4599999999999999999999987  555554

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=94.18  E-value=0.067  Score=54.90  Aligned_cols=41  Identities=32%  Similarity=0.427  Sum_probs=38.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++|++++|+..++
T Consensus       273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~  313 (494)
T 3d64_A          273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICA  313 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHH
T ss_pred             cccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhH
Confidence            45789999999999999999999999999999999998875

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.18  E-value=0.045  Score=52.26  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=36.5

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .++.|||+|.+|++++..|.+.|.+|++++|+.++++.+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~   70 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFI   70 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence            5799999999999999999999999999999999887653

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=94.18  E-value=0.026  Score=52.59  Aligned_cols=39  Identities=28%  Similarity=0.376  Sum_probs=34.5

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      +++|++||.|+ ||.|++++..|.+.|++|++++|+.++.
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~   65 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPS   65 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhc
Confidence            56889999986 8899999999999999999999986553

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=94.11  E-value=0.052  Score=52.79  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=36.9

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~  185 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE  185 (334)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch
Confidence            4578999999999999999999999999999999998765

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.10  E-value=0.044  Score=49.41  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=31.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+...++.|+|+|.+|.+++..|.+.|.+|++++|++
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            34567899999999999999999999999999999975

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=94.10  E-value=1.4  Score=41.93  Aligned_cols=194  Identities=13%  Similarity=0.116  Sum_probs=108.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCC------CChhHH-HHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNF------QPGKDL-EIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~------~~~~~l-~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (409)
                      +.++.++-++.+.+.|.|.||.=-  +...      .+.+++ ..+.+..+.|+...++          .    .+-++.
T Consensus        28 ~~e~k~~i~~~L~~~Gv~~IE~g~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~----------~----~~~i~~   91 (302)
T 2ftp_A           28 EVADKIRLVDDLSAAGLDYIEVGS--FVSPKWVPQMAGSAEVFAGIRQRPGVTYAALAP----------N----LKGFEA   91 (302)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEE--CSCTTTCGGGTTHHHHHHHSCCCTTSEEEEECC----------S----HHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcCEEEECC--CcCccccccccCHHHHHHHhhhcCCCEEEEEeC----------C----HHHHHH
Confidence            456667777777778999999864  1111      111122 2222333556554432          1    245778


Q ss_pred             HHHcCCcEEEEeccCcc---------------chHHHHH-hccCCCcEEE------EeccCCCCCCCHhHHHHHHHHHHH
Q 015310           94 AEDLGADYVDFELKVAS---------------NILGKQY-SSHQSGTRFI------VSCNLDCETPSEEDLGYLVSRMQA  151 (409)
Q Consensus        94 ~~~~g~dyvDiEl~~~~---------------~~~~~l~-~~~~~~~kiI------~S~H~f~~tp~~~~l~~~~~~~~~  151 (409)
                      +++.|++.|.|=....+               +..++.+ .+++.+.++-      .+..+...+ +.+++.+.++++.+
T Consensus        92 a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~-~~~~~~~~~~~~~~  170 (302)
T 2ftp_A           92 ALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDV-DPRQVAWVARELQQ  170 (302)
T ss_dssp             HHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCC-CHHHHHHHHHHHHH
T ss_pred             HHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCC-CHHHHHHHHHHHHH
Confidence            88999999988443322               1123333 3566777773      222222222 35789999999999


Q ss_pred             cCCCEEEEEeec--CCHhHHHHHHHHhccC--CCCEEEEE--cCccchhhhhhcCCCCCcccccc---CCC-CC---CCC
Q 015310          152 TGADIIKLVFSV--NDITEIARIFQLLSHC--QVPIIAYS--VGERGLVSQLLSPKFNGALVYGS---LKG-TP---VLG  218 (409)
Q Consensus       152 ~gaDivKia~~~--~~~~D~~~ll~~~~~~--~~p~i~~~--MG~~G~~SRi~~~~~Gs~ltf~~---l~~-~s---APG  218 (409)
                      .|+|.+-++-+.  .++.++.++++.+.+.  +.|+..=+  .--++...=+..-..|-...=++   +++ |-   +.|
T Consensus       171 ~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~G  250 (302)
T 2ftp_A          171 MGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATG  250 (302)
T ss_dssp             TTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBC
T ss_pred             cCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCCC
Confidence            999999988443  3688888888877543  35654322  12222222222222232222122   233 32   356


Q ss_pred             CCCHHHHHhhhhh
Q 015310          219 LPTVESLRQTYKV  231 (409)
Q Consensus       219 Q~~~~~l~~~~~~  231 (409)
                      +.+++++...++.
T Consensus       251 N~~~E~lv~~l~~  263 (302)
T 2ftp_A          251 NVASEDVLYLLNG  263 (302)
T ss_dssp             BCBHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHh
Confidence            8999888877653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.08  E-value=0.063  Score=51.73  Aligned_cols=40  Identities=20%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCC--eEEEEeCChHHHHhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFEQSLLL  407 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~--~i~v~nR~~~ka~~l  407 (409)
                      .+++.|||+|.+|.+++..|.+.|.  +|++++|+.++++.+
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a   74 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA   74 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence            3689999999999999999999998  999999999877654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.08  E-value=0.061  Score=52.00  Aligned_cols=41  Identities=34%  Similarity=0.396  Sum_probs=36.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|+|+||.|.+++..+...|++|+++.|+.++.+.+
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  204 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA  204 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            47899999999999999999999999999999998876643

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.06  E-value=0.053  Score=52.20  Aligned_cols=41  Identities=32%  Similarity=0.417  Sum_probs=37.3

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|+++||.|+ ||.|.+++..+...|++|+++.|+.++.+.+
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  190 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFL  190 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            5789999998 9999999999999999999999998887765

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=94.03  E-value=0.94  Score=42.06  Aligned_cols=116  Identities=13%  Similarity=0.057  Sum_probs=78.3

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecC--C-CCCCC-hhHHHHHHhcC-CCcEEEEeccCCCCCCCCCC
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDC--I-NNFQP-GKDLEIILTKK-PLPVLIVYRPKWAGGLYEGD   83 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~--l-~~~~~-~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~   83 (409)
                      ++++|+-||..-|...+.++++.+.+.|+|++.+++=-  | ++..- .+.++.+++.+ ++|+-+.+-..        +
T Consensus        26 ~~~~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~--------~   97 (246)
T 3inp_A           26 KHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVK--------P   97 (246)
T ss_dssp             -CCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECS--------S
T ss_pred             cCCeeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeC--------C
Confidence            45789999999999999999998888899999887631  1 22221 24677788777 89999988642        2


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCC
Q 015310           84 EHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETP  137 (409)
Q Consensus        84 ~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp  137 (409)
                      ++.|   ++.+.+.|+|+|-+=....+...+.+...++.|.|+.++.+.  .||
T Consensus        98 p~~~---i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp--~Tp  146 (246)
T 3inp_A           98 VDAL---IESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNP--ATG  146 (246)
T ss_dssp             CHHH---HHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECT--TCC
T ss_pred             HHHH---HHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecC--CCC
Confidence            2344   456678899998886555443333333445567777777653  455

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=94.02  E-value=0.043  Score=53.31  Aligned_cols=41  Identities=27%  Similarity=0.410  Sum_probs=37.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++|++++|+.++.
T Consensus       133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~  173 (324)
T 3evt_A          133 STLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPA  173 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCC
T ss_pred             ccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchh
Confidence            56789999999999999999999999999999999986543

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=94.01  E-value=0.051  Score=50.57  Aligned_cols=41  Identities=22%  Similarity=0.235  Sum_probs=34.7

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEE-eCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~-nR~~~ka~~l  407 (409)
                      ++|++||.|+ ||.|++++..|.+.|++|++. .|+.++.+++
T Consensus        25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~   67 (272)
T 4e3z_A           25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAV   67 (272)
T ss_dssp             CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHH
Confidence            5788999985 889999999999999988775 8888777654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=93.98  E-value=0.063  Score=51.75  Aligned_cols=41  Identities=27%  Similarity=0.383  Sum_probs=37.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++.
T Consensus       138 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~  178 (313)
T 2ekl_A          138 LELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE  178 (313)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh
Confidence            46789999999999999999999999999999999987653

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=93.95  E-value=0.069  Score=51.71  Aligned_cols=43  Identities=14%  Similarity=0.328  Sum_probs=37.8

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhC-CC-eEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSR-GA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~-G~-~i~v~nR~~~ka~~l  407 (409)
                      .++++++||.|+ |+.|++++..|.+. |. +|++++|+.++...+
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~   63 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEM   63 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHH
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHH
Confidence            467899999995 88999999999999 98 999999998876554

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.91  E-value=0.27  Score=48.80  Aligned_cols=112  Identities=18%  Similarity=0.264  Sum_probs=68.7

Q ss_pred             cCCCceEeecCcccHHHHHHHhc--CCCCCeEEEcccchHHHHhhhhhhcHHHHHhccceEEEEeCCCCeEEEEcCcHHH
Q 015310          264 VNYNGIYVPMFVDDLKKFFSTYS--SPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEA  341 (409)
Q Consensus       264 ~gl~~~y~~~~~~~l~~~~~~~~--~~~~~G~nVT~P~K~~i~~~~d~~~~~A~~igAvNti~~~~~~g~l~G~NTD~~G  341 (409)
                      -|+|..=..+++.+.++|++.++  .+.|.|+|.--==....+..++++-+.      .|          +-=+|-|--|
T Consensus       103 agid~~pi~Ldv~~~dEfv~~v~~~~p~F~~I~lED~~~p~~f~il~~~r~~------~~----------ipvf~DDiqG  166 (398)
T 2a9f_A          103 AGVDAIPIVLDTKDTEEIISIVKALAPTFGGINLEDISAPRCFEIEQRLIKE------CH----------IPVFHDDQHG  166 (398)
T ss_dssp             SSCEEEEEECCCCCHHHHHHHHHHHGGGCSEEEECSCCTTHHHHHHHHHHHH------CS----------SCEEEHHHHH
T ss_pred             cCCceeeeEeCCCCHHHHHHHHHHcCCceeEeccccCCChHHHHHHHHhhhc------CC----------cceecchhhh
Confidence            46774434455667888876663  478999877421123344444443332      12          1124445433


Q ss_pred             H----HHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          342 S----ITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       342 ~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      -    +.++...+.-         .+..++..+++|+|||-+|-+++.-|..+|+ +|++++|+
T Consensus       167 Ta~V~lAall~al~l---------~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          167 TAIVVLAAIFNSLKL---------LKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             HHHHHHHHHHHHHHT---------TTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHHHHHHHH---------hCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            2    2222222221         1246777899999999999999999999999 99999986

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.88  E-value=0.061  Score=51.92  Aligned_cols=41  Identities=29%  Similarity=0.233  Sum_probs=36.7

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|.|+ ||.|++++..+...|++|+++.|+.++.+.+
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~  196 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLL  196 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            5789999997 9999999999999999999999998887654

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=93.87  E-value=0.058  Score=50.08  Aligned_cols=43  Identities=23%  Similarity=0.313  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEE-EeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVI-FDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v-~nR~~~ka~~l  407 (409)
                      .+.+|++||.|+ ||.|++++..|.+.|++|++ ..|+.++++++
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~   67 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQET   67 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHH
Confidence            467899999986 88999999999999998755 66887766554

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=93.87  E-value=0.42  Score=43.84  Aligned_cols=67  Identities=9%  Similarity=0.135  Sum_probs=50.7

Q ss_pred             CCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEe-cCC--CCCCC-hhHHHHHHhcC-CCcEEEEeccC
Q 015310            8 KNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DCI--NNFQP-GKDLEIILTKK-PLPVLIVYRPK   74 (409)
Q Consensus         8 ~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D~l--~~~~~-~~~l~~l~~~~-~~PiI~T~R~~   74 (409)
                      +.+++|+-||..-|..++.++++.+.+.|+|++.+++ |--  .+.+- ...++.+++.+ +.|+.+.+-..
T Consensus         3 ~~~~~i~pSila~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv~   74 (227)
T 1tqx_A            3 TLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVE   74 (227)
T ss_dssp             -CCCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESS
T ss_pred             CCCCeEEeehhcCChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEEc
Confidence            4578899999999999999999998888999998887 421  22222 24677787777 78888888753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=93.86  E-value=0.069  Score=51.74  Aligned_cols=40  Identities=35%  Similarity=0.381  Sum_probs=35.6

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|+++||+|+ ||.|++++..+...|++|+++.|+.++.+.
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~  209 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEEL  209 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHH
Confidence            5789999999 899999999999999999999998877654

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=93.83  E-value=0.95  Score=41.33  Aligned_cols=113  Identities=8%  Similarity=-0.047  Sum_probs=65.0

Q ss_pred             CCeeEEEeec---cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---hHHHHHHhcCCCcEEEEeccCCCCCCCCC
Q 015310            9 NTTMICAPLM---AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEG   82 (409)
Q Consensus         9 ~~~~icv~l~---~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~   82 (409)
                      ..-++++...   ..+.++.++   .+.+.|.|.||++.+.+......   +++++.++..++.+....-...      .
T Consensus        16 ~~~klg~~~~~~~~~~~~~~l~---~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~------~   86 (257)
T 3lmz_A           16 NPFHLGMAGYTFVNFDLDTTLK---TLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM------K   86 (257)
T ss_dssp             CSSEEEECGGGGTTSCHHHHHH---HHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE------C
T ss_pred             CceEEEEEEEeecCCCHHHHHH---HHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc------C
Confidence            3466777442   335566655   44567999999999865321122   3444555556666553221110      3


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccC
Q 015310           83 DEHKRLEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNL  132 (409)
Q Consensus        83 ~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~  132 (409)
                      +.+...+.++.+.++|+.+|=+.-.  .+.++++. .+.+.++++.+=.|+
T Consensus        87 ~~~~~~~~i~~A~~lGa~~v~~~p~--~~~l~~l~~~a~~~gv~l~lEn~~  135 (257)
T 3lmz_A           87 SEEEIDRAFDYAKRVGVKLIVGVPN--YELLPYVDKKVKEYDFHYAIHLHG  135 (257)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEEEEC--GGGHHHHHHHHHHHTCEEEEECCC
T ss_pred             CHHHHHHHHHHHHHhCCCEEEecCC--HHHHHHHHHHHHHcCCEEEEecCC
Confidence            4566777888888999888877522  23344444 233456666666664

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.80  E-value=0.069  Score=51.99  Aligned_cols=43  Identities=14%  Similarity=0.193  Sum_probs=37.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC--eEEEEeCChHHHHhhh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~--~i~v~nR~~~ka~~la  408 (409)
                      ...+++.|+|+|.+|.++++.|...|.  +|.+++++.++++..+
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a   61 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEM   61 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHH
Confidence            346789999999999999999999996  8999999998887654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=93.77  E-value=0.058  Score=52.00  Aligned_cols=40  Identities=33%  Similarity=0.318  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  179 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKP  179 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcc
Confidence            4578999999999999999999999999999999998754

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=93.77  E-value=0.051  Score=51.96  Aligned_cols=39  Identities=15%  Similarity=0.160  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ..++++++||.|+ |+.|++++..|.+.|++|++++|+.+
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~   55 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFAT   55 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSS
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            4678899999997 88999999999999999999999644

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.76  E-value=0.084  Score=51.64  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=36.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|+|+||+|.+++..+...|++|+++.|+.++.+.+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  227 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEA  227 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            57899999999999999999999999999999998776543

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=93.76  E-value=0.034  Score=54.46  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI  399 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR  399 (409)
                      +++.+|+|+|+||.|..++..|...|+ +|+|++.
T Consensus        34 L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~   68 (346)
T 1y8q_A           34 LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDH   68 (346)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence            446799999999999999999999999 9999953

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.67  E-value=0.071  Score=52.33  Aligned_cols=41  Identities=22%  Similarity=0.334  Sum_probs=37.1

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ..++.|||+|..|.+++..|++.|.+|++++|++++++.+.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~   69 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQ   69 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            35799999999999999999999999999999999887663

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=93.67  E-value=0.07  Score=51.30  Aligned_cols=40  Identities=23%  Similarity=0.330  Sum_probs=36.9

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  177 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE  177 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh
Confidence            4678999999999999999999999999999999998765

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=93.66  E-value=1.5  Score=40.75  Aligned_cols=145  Identities=18%  Similarity=0.176  Sum_probs=90.9

Q ss_pred             ccCCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCh-hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH---HH
Q 015310           18 MAQSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA---LH   92 (409)
Q Consensus        18 ~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l---l~   92 (409)
                      ...+.+++.    .+.+.|||-|||.-++-. ...|. ..++.+++..++|+.+-+|++  ||-|-.++++...+   ++
T Consensus         7 c~~s~~~a~----~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~ipv~vMIRPR--~GdF~Ys~~E~~~M~~Di~   80 (256)
T 1twd_A            7 CCYSMECAL----TAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPR--GGDFCYSDGEFAAILEDVR   80 (256)
T ss_dssp             EESSHHHHH----HHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSS--SSCSCCCHHHHHHHHHHHH
T ss_pred             EeCCHHHHH----HHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHHcCCceEEEECCC--CCCCcCCHHHHHHHHHHHH
Confidence            345655554    455689999999988754 33443 345556667899999999964  56666776554433   44


Q ss_pred             HHHHcCCcEEEEeccC-----ccchHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEee--cC
Q 015310           93 LAEDLGADYVDFELKV-----ASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFS--VN  164 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~-----~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~--~~  164 (409)
                      .+.+.|+|-|=+=.-.     +.+..++|+.+- ++..  +.||- |+.+++..   +-++.+.++|.|  .|-+.  +.
T Consensus        81 ~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a-~~~~--vTFHRAfD~~~d~~---~ale~L~~lG~~--rILTSG~~~  152 (256)
T 1twd_A           81 TVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAA-GPLA--VTFHRAFDMCANPL---YTLNNLAELGIA--RVLTSGQKS  152 (256)
T ss_dssp             HHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHH-TTSE--EEECGGGGGCSCHH---HHHHHHHHHTCC--EEEECTTSS
T ss_pred             HHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh-CCCc--EEEECchhccCCHH---HHHHHHHHcCCC--EEECCCCCC
Confidence            6677888877653322     335566776432 3444  67776 88887654   446666677855  33343  45


Q ss_pred             CHhHHHHHHHHh
Q 015310          165 DITEIARIFQLL  176 (409)
Q Consensus       165 ~~~D~~~ll~~~  176 (409)
                      +..|.+.+++-+
T Consensus       153 ~a~~g~~~L~~L  164 (256)
T 1twd_A          153 DALQGLSKIMEL  164 (256)
T ss_dssp             STTTTHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            566666655554

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=93.63  E-value=0.071  Score=52.19  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=36.8

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHH-hCCCeEEEEeCChHHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFEQS  404 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~-~~G~~i~v~nR~~~ka  404 (409)
                      ..+.|+++.|+|.|.+|++++..|. ..|++|++++|+.++.
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~  200 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADA  200 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCH
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcch
Confidence            4678999999999999999999999 9999999999986543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.60  E-value=0.089  Score=50.73  Aligned_cols=41  Identities=34%  Similarity=0.470  Sum_probs=36.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|+++||.|+|++|.+++..+...|++|+.++++.+|.+.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  206 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLA  206 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            57899999999999999999999999999999998886643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.56  E-value=0.092  Score=51.10  Aligned_cols=40  Identities=28%  Similarity=0.316  Sum_probs=36.1

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|++++|.|+ ||.|.+++..+...|++|+++.|+.++.+.
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~  210 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKI  210 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHH
Confidence            4789999997 999999999999999999999999887664

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=93.52  E-value=0.22  Score=50.24  Aligned_cols=52  Identities=27%  Similarity=0.352  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEeC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI  399 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~nR  399 (409)
                      ++|.+..++..+.+.+         .+++|++|+|.|.|.+|+.++.-|.++|++|+ |.++
T Consensus       215 g~Gv~~~~~~~~~~~g---------~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~  267 (440)
T 3aog_A          215 GRGVFITAAAAAEKIG---------LQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDH  267 (440)
T ss_dssp             HHHHHHHHHHHHHHHT---------CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECS
T ss_pred             HHHHHHHHHHHHHhcC---------CCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            4677777777665333         57889999999999999999999999999654 8887

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=93.52  E-value=0.054  Score=52.75  Aligned_cols=40  Identities=20%  Similarity=0.273  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~  199 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKP  199 (333)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCT
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchh
Confidence            4678999999999999999999999999999999998764

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=93.49  E-value=0.73  Score=42.31  Aligned_cols=111  Identities=14%  Similarity=0.124  Sum_probs=76.2

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEe-cC--CCCCCC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DC--INNFQP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKR   87 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D~--l~~~~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~   87 (409)
                      +|+-||..-|..++.++++.+ +.|+|++++++ |-  .++.+- ...++.+++.++.|+.+.+-..        +++.|
T Consensus         2 ~i~pSila~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~--------dp~~~   72 (231)
T 3ctl_A            2 KISPSLMCMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVT--------RPQDY   72 (231)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESS--------CGGGT
T ss_pred             eEEeehhhCChhhHHHHHHHH-HcCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEec--------CHHHH
Confidence            588899999999999999998 89999999886 42  123221 2467777776789999998764        22334


Q ss_pred             HHHHHHHHHcCCcEEEEeccC-ccchHHHHH-hccCCCcEEEEeccCCCCCC
Q 015310           88 LEALHLAEDLGADYVDFELKV-ASNILGKQY-SSHQSGTRFIVSCNLDCETP  137 (409)
Q Consensus        88 ~~ll~~~~~~g~dyvDiEl~~-~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp  137 (409)
                         ++.+.+.|+|+|=+=... .... .+++ ..++.|.++.++.+-  .||
T Consensus        73 ---i~~~~~aGAd~itvh~Ea~~~~~-~~~i~~i~~~G~k~gv~lnp--~tp  118 (231)
T 3ctl_A           73 ---IAQLARAGADFITLHPETINGQA-FRLIDEIRRHDMKVGLILNP--ETP  118 (231)
T ss_dssp             ---HHHHHHHTCSEEEECGGGCTTTH-HHHHHHHHHTTCEEEEEECT--TCC
T ss_pred             ---HHHHHHcCCCEEEECcccCCccH-HHHHHHHHHcCCeEEEEEEC--CCc
Confidence               356777899998876555 3322 2333 445677788777742  355

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=93.44  E-value=0.064  Score=52.17  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~  181 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV  181 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            3578999999999999999999999999999999998765

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.43  E-value=0.11  Score=50.48  Aligned_cols=40  Identities=28%  Similarity=0.274  Sum_probs=35.5

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|++|||+|+||.|.+++..+..+|++|+++.++.++.+.
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~  207 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEV  207 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            4789999999999999999888999999999999887654

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=93.41  E-value=0.078  Score=49.27  Aligned_cols=42  Identities=21%  Similarity=0.265  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEe-CChHHHHh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFEQSLL  406 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~n-R~~~ka~~  406 (409)
                      .+.+|+++|.|+ ||.|++++..|.+.|++|++.+ |+.++.++
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~   65 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVST   65 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHH
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHH
Confidence            356889999996 8899999999999999988887 55555443

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=93.40  E-value=0.92  Score=40.25  Aligned_cols=119  Identities=11%  Similarity=0.049  Sum_probs=63.4

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHH---hcCCCcEEEEeccCCCCCCCCCCHHH
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHK   86 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~   86 (409)
                      .|++|.- +.+...+..+.++.+.+.|+|++++|.-........+.++.++   +..+.|+++.               +
T Consensus        14 ~~~l~~I-t~~~~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~---------------~   77 (215)
T 1xi3_A           14 KLKLYVI-TDRRLKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVD---------------D   77 (215)
T ss_dssp             HTSEEEE-CCTTTSCHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEE---------------S
T ss_pred             CCCEEEE-ECCchhhHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCeEEEc---------------C
Confidence            3556653 3221114555666777889999999952221100012222232   2346787763               1


Q ss_pred             HHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           87 RLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        87 ~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                         .++.+.+.|+|+|=++-...+  ...+.... .+..+.+|.|+    |  +++    .++.+.|+|++++-
T Consensus        78 ---~~~~a~~~gad~v~l~~~~~~--~~~~~~~~-~~~~~~v~~~t----~--~e~----~~~~~~g~d~i~~~  135 (215)
T 1xi3_A           78 ---RVDVALAVDADGVQLGPEDMP--IEVAKEIA-PNLIIGASVYS----L--EEA----LEAEKKGADYLGAG  135 (215)
T ss_dssp             ---CHHHHHHHTCSEEEECTTSCC--HHHHHHHC-TTSEEEEEESS----H--HHH----HHHHHHTCSEEEEE
T ss_pred             ---hHHHHHHcCCCEEEECCccCC--HHHHHHhC-CCCEEEEecCC----H--HHH----HHHHhcCCCEEEEc
Confidence               124566789999977632211  12222222 45667777763    2  343    23456799999974

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=93.39  E-value=0.11  Score=50.80  Aligned_cols=41  Identities=29%  Similarity=0.252  Sum_probs=36.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|+++||+|+|++|.+++..+...|++|+++.++.++.+.+
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  229 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRA  229 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHH
Confidence            57899999999999999999999999999999998876543

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=93.39  E-value=0.089  Score=50.86  Aligned_cols=41  Identities=22%  Similarity=0.363  Sum_probs=36.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .|++++|+|+||.|.+++..+...|+ +|+++.|+.++.+.+
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~  205 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFA  205 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            68899999999999999999999999 999999998876543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=93.37  E-value=0.072  Score=50.49  Aligned_cols=40  Identities=28%  Similarity=0.304  Sum_probs=35.5

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|++++|+|+ ||.|++++..+...|++|+++.|+.++.+.
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~  165 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLAL  165 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            4789999998 999999999999999999999998877554

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.36  E-value=0.086  Score=51.06  Aligned_cols=41  Identities=27%  Similarity=0.281  Sum_probs=36.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .|++++|+|+|+.|.+++..+...|+ +|+++.|+.++.+.+
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~  208 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELA  208 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            68899999999999999999999999 999999998876543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=93.33  E-value=0.069  Score=51.94  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=36.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  181 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP  181 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            4577899999999999999999999999999999998765

>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7

Probab=93.29  E-value=0.64  Score=42.71  Aligned_cols=129  Identities=16%  Similarity=0.143  Sum_probs=73.8

Q ss_pred             HHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEecc---CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           29 MYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRP---KWAGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        29 ~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~---~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      ++.+.+.|.|.||++.+++...+..+++++.++..++++....-.   ..++ .  .. +...+.++.|.++|+.+|=+-
T Consensus        29 l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~-~--~~-~~~~~~i~~A~~lGa~~v~~~  104 (264)
T 1yx1_A           29 LPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDG-Q--LN-PELEPTLRRAEACGAGWLKVS  104 (264)
T ss_dssp             HHHHHHHTCSEEEEEGGGCSSCCCHHHHHHHHHHTTCEEEEEEEEEEECTTS-S--BC-TTHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHcCCCEEEEEHHhcCCCHHHHHHHHHHHHcCCEEEEecchhhcCCch-h--HH-HHHHHHHHHHHHcCCCEEEEe
Confidence            445566799999999987654223445666666677776543211   1111 1  11 345567888889999988775


Q ss_pred             ccCc--cchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee
Q 015310          106 LKVA--SNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS  162 (409)
Q Consensus       106 l~~~--~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~  162 (409)
                      ....  ...++++. .+.+.++++.+=.|.+.-..+.+++..+++...+.+.+ +++..=
T Consensus       105 ~g~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~ll~~v~~~~~~-vg~~~D  163 (264)
T 1yx1_A          105 LGLLPEQPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLERFFRLAERQQLD-LAMTFD  163 (264)
T ss_dssp             EECCCSSCCHHHHHHHHTTSSCEEEEECCSSHHHHCHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             cCCCCcHHHHHHHHHHHHhcCCEEEEecCCCCCCCCHHHHHHHHHHHHhcCCC-eEEEEe
Confidence            4322  12344554 34455666666555321112345666666666555556 776653

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.27  E-value=0.072  Score=51.03  Aligned_cols=41  Identities=22%  Similarity=0.216  Sum_probs=36.4

Q ss_pred             CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|.| +||.|++++..+...|++|+++.|+.++.+.+
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~  181 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA  181 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999 69999999999999999999999998876654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=93.24  E-value=0.09  Score=50.93  Aligned_cols=41  Identities=27%  Similarity=0.262  Sum_probs=36.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++|||+|+|+.|.+++..+...|++|+++.++.+|.+.+
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  216 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDA  216 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence            57899999999999999999999999999999988776543

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=93.21  E-value=0.093  Score=50.95  Aligned_cols=41  Identities=34%  Similarity=0.438  Sum_probs=36.7

Q ss_pred             CC--CEEEEEec-hhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AG--RMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~--~~vlvlGa-GGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .|  ++++|.|+ ||.|++++..+...|+ +|+++.|+.++.+.+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~  202 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILL  202 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence            46  89999998 9999999999999999 999999998876654

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=93.20  E-value=0.064  Score=52.14  Aligned_cols=40  Identities=23%  Similarity=0.126  Sum_probs=36.3

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  181 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIK  181 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccH
Confidence            4578899999999999999999999999999999998654

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=93.16  E-value=2.3  Score=39.34  Aligned_cols=62  Identities=18%  Similarity=0.292  Sum_probs=41.0

Q ss_pred             CCeeEEEeecc--CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------hhHHHHHHhcCCC
Q 015310            9 NTTMICAPLMA--QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTKKPL   65 (409)
Q Consensus         9 ~~~~icv~l~~--~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~---------------------~~~l~~l~~~~~~   65 (409)
                      +++.+...++.  ++.++..+.++.+.+.|+|+||+++-+-++..+                     .+.++.+++..++
T Consensus        16 ~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~   95 (262)
T 1rd5_A           16 GKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSC   95 (262)
T ss_dssp             TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSS
T ss_pred             CCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence            44555555544  445888888888888999999999866432211                     1234555556788


Q ss_pred             cEEEE
Q 015310           66 PVLIV   70 (409)
Q Consensus        66 PiI~T   70 (409)
                      |+++-
T Consensus        96 Pv~~m  100 (262)
T 1rd5_A           96 PVVLL  100 (262)
T ss_dssp             CEEEE
T ss_pred             CEEEE
Confidence            98875

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=93.15  E-value=0.059  Score=52.11  Aligned_cols=40  Identities=15%  Similarity=0.079  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|..|++++..|..+|++|+.++|+.++
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~  174 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKS  174 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCC
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchh
Confidence            4578999999999999999999999999999999998654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.15  E-value=0.081  Score=50.88  Aligned_cols=41  Identities=24%  Similarity=0.252  Sum_probs=36.3

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|.|+ ||.|.+++..+...|++|+++.|+.++.+.+
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~  186 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETA  186 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            5789999995 9999999999999999999999998776654

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=93.14  E-value=0.055  Score=50.02  Aligned_cols=38  Identities=34%  Similarity=0.448  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEech---hHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          365 PLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       365 ~~~~~~vlvlGaG---Gaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ++++|+++|.|++   |.|++++..|.+.|++|+++.|+.+
T Consensus        17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~   57 (267)
T 3gdg_A           17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRA   57 (267)
T ss_dssp             CCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSS
T ss_pred             CcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcc
Confidence            4778999999975   9999999999999999999888744

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=93.13  E-value=0.086  Score=51.51  Aligned_cols=40  Identities=28%  Similarity=0.309  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  206 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS  206 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc
Confidence            4678999999999999999999999999999999998754

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=93.12  E-value=0.093  Score=50.73  Aligned_cols=40  Identities=25%  Similarity=0.308  Sum_probs=36.3

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeC-ChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI-DFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR-~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++| +.++
T Consensus       142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~  182 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS  182 (320)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh
Confidence            457899999999999999999999999999999999 7654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.10  E-value=0.1  Score=53.11  Aligned_cols=39  Identities=26%  Similarity=0.227  Sum_probs=35.5

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      -++|.|||+|-+|.+++..|++.|.+|++++|++++++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~   75 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDA   75 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            368999999999999999999999999999999887664

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=93.10  E-value=0.088  Score=51.77  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=31.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +...|+|+|+|-+|.++|++|++.|.+|+|+.|..
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~   56 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK   56 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34589999999999999999999999999999874

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=93.09  E-value=0.097  Score=50.89  Aligned_cols=41  Identities=17%  Similarity=0.174  Sum_probs=36.4

Q ss_pred             CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|.| +||.|.+++..+...|++|++++|+.++.+.+
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  203 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA  203 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            578999999 69999999999999999999999998876653

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.06  E-value=0.097  Score=50.58  Aligned_cols=41  Identities=24%  Similarity=0.117  Sum_probs=36.5

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|.|+ ||.|++++..+...|++|+++.|+.++.+.+
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~  207 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRA  207 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            4789999999 9999999999999999999999998876654

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=93.03  E-value=0.23  Score=49.80  Aligned_cols=52  Identities=25%  Similarity=0.360  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEeC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI  399 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~nR  399 (409)
                      ++|.+.+++..+.+.+         .+++|++++|.|.|.+|..++.-|.++|++|+ |.+.
T Consensus       190 g~Gv~~~~~~~~~~~g---------~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~  242 (421)
T 1v9l_A          190 GFGVAVATREMAKKLW---------GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDI  242 (421)
T ss_dssp             HHHHHHHHHHHHHHHH---------SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             HHHHHHHHHHHHHhcC---------CCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3677777776665332         57889999999999999999999999999654 8887

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=92.97  E-value=0.064  Score=51.27  Aligned_cols=39  Identities=33%  Similarity=0.469  Sum_probs=36.0

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      .+.|+++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       119 ~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  157 (290)
T 3gvx_A          119 LLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVD  157 (290)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCC
T ss_pred             eeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccc
Confidence            478999999999999999999999999999999998654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=92.94  E-value=0.11  Score=52.73  Aligned_cols=37  Identities=16%  Similarity=0.238  Sum_probs=34.5

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      ++|.|||+|-+|.+++..|++.|.+|++++|+++++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~   91 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCK   91 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHH
Confidence            6899999999999999999999999999999998654

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=92.90  E-value=0.11  Score=50.25  Aligned_cols=41  Identities=27%  Similarity=0.340  Sum_probs=36.2

Q ss_pred             CCCEEEEEech-hHHHHHHHHHHhC-CCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAG-GAGRALAFGAKSR-GARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaG-Gaarai~~aL~~~-G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|.|+| |.|++++..+... |++|++++|+.++.+.+
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~  212 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA  212 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            57899999998 9999999999998 99999999998876543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.88  E-value=0.14  Score=50.27  Aligned_cols=40  Identities=28%  Similarity=0.307  Sum_probs=35.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|.+|||+|+|++|.+++..+..+|++|+++.++.++.+.
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~  233 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREA  233 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            4789999999999999999888999999999998877654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.86  E-value=0.11  Score=50.31  Aligned_cols=41  Identities=32%  Similarity=0.394  Sum_probs=36.2

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|+++||.|+ ||.|.+++..+...|++|+++.|+.++.+.+
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  200 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFV  200 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            5789999998 9999999999999999999999988776543

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=92.84  E-value=0.081  Score=51.43  Aligned_cols=38  Identities=21%  Similarity=0.235  Sum_probs=35.5

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++|++++|+.
T Consensus       141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~  178 (330)
T 4e5n_A          141 TGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKA  178 (330)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSC
T ss_pred             CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            46789999999999999999999999999999999986

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=92.84  E-value=0.13  Score=50.39  Aligned_cols=40  Identities=20%  Similarity=0.314  Sum_probs=36.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+...
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~  195 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK  195 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH
Confidence            4678999999999999999999999999999999998643

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.81  E-value=0.11  Score=49.84  Aligned_cols=40  Identities=28%  Similarity=0.320  Sum_probs=36.0

Q ss_pred             CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|++++|+| +||.|.+++..+...|++|+++.|+.++.+.
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~  188 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKI  188 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            578999999 7999999999999999999999999887654

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=92.80  E-value=0.084  Score=51.22  Aligned_cols=40  Identities=25%  Similarity=0.403  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|+.++|+.++
T Consensus       136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~  175 (324)
T 3hg7_A          136 QGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRE  175 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHH
Confidence            4678999999999999999999999999999999998643

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=92.79  E-value=0.099  Score=51.19  Aligned_cols=38  Identities=29%  Similarity=0.493  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      .+.|+++.|+|.|.+|++++..|...|++|++++|+.+
T Consensus       165 ~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~  202 (347)
T 1mx3_A          165 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS  202 (347)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             CCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            57899999999999999999999999999999999754

>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}

Probab=92.77  E-value=6.6  Score=37.57  Aligned_cols=160  Identities=13%  Similarity=0.165  Sum_probs=97.4

Q ss_pred             CeeEEEeecc------------CCHHHHHHHHHHHHhcCCCEEEEEecC-CCCC---CC---hhHHHHHHhcCCCcEEEE
Q 015310           10 TTMICAPLMA------------QSVEQVLSNMYQAKAEGADVVEIRLDC-INNF---QP---GKDLEIILTKKPLPVLIV   70 (409)
Q Consensus        10 ~~~icv~l~~------------~~~~e~~~~~~~~~~~~aD~vElRlD~-l~~~---~~---~~~l~~l~~~~~~PiI~T   70 (409)
                      ...|++.+++            -|.+|+.+++.++.+.||-++=+-+-- -+..   ++   .+.+..+|+.++..|.+|
T Consensus         7 kvIIt~A~tGa~~t~~~~P~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~T   86 (311)
T 3e49_A            7 KVIITCAVTGAIHTPSMSPYLPVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDAVINLT   86 (311)
T ss_dssp             CBCEEEECSCSSSCGGGCTTSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCCEEEEC
T ss_pred             CEEEEEcCCCCcCCcccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEEC
Confidence            4566666765            255899999999999999999877654 2211   11   245566666565444444


Q ss_pred             eccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccc---------------hHHHHHhccCCCcEEEEeccCCCC
Q 015310           71 YRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN---------------ILGKQYSSHQSGTRFIVSCNLDCE  135 (409)
Q Consensus        71 ~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~---------------~~~~l~~~~~~~~kiI~S~H~f~~  135 (409)
                      .     ||....+.++|++.+..   +.+|..-+...+..-               +-+..+..  ... .|     |..
T Consensus        87 T-----gg~~~~~~eerla~~~~---~~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~--~~~-~v-----~~n  150 (311)
T 3e49_A           87 T-----GGSPHMTVEERLRPATH---YMPELASLNMGSMNFGLYPMLERFKEFAHGWEREHLER--SRD-LV-----FKN  150 (311)
T ss_dssp             S-----CSCTTSCHHHHHHHHHH---HCCSEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHG--GGG-CE-----ECC
T ss_pred             C-----CCCCCCCHHHHHHHHHh---cCCCeeeecCCCcccccccchhhccccccccchhhccc--CCC-ce-----ecC
Confidence            2     45445678888876643   368887776544210               00001100  001 11     233


Q ss_pred             CCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccC---CCCEEEEEcCc
Q 015310          136 TPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC---QVPIIAYSVGE  190 (409)
Q Consensus       136 tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~---~~p~i~~~MG~  190 (409)
                      |  .+.+.+.++.|++.|   +|.-...-|..++..+..+..+-   ....+-+.||.
T Consensus       151 ~--~~~i~~~~~~~~e~G---i~pE~e~fd~g~l~~~~~l~~~Gl~~~p~~~~~vlGv  203 (311)
T 3e49_A          151 T--FADIEFILKTCGGNG---TRFEFECYDTSHLYNLAHFVDRKLATPPFFVQTVFGL  203 (311)
T ss_dssp             C--HHHHHHHHHHHHTTT---CEEEEEECSHHHHHHHHHHHHTTCSCSSEEEEEEESC
T ss_pred             C--HHHHHHHHHHHHHcC---CeeEEEEECHHHHHHHHHHHHcCCCCCCeEEEEEecC
Confidence            4  367899999999999   57777777999987777776432   33466677764

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=92.73  E-value=0.37  Score=45.95  Aligned_cols=88  Identities=15%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCC-EEEEEecC--CC---CC--CC---hhHHHHHHhcCCCcEEEEeccCCCCC
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGAD-VVEIRLDC--IN---NF--QP---GKDLEIILTKKPLPVLIVYRPKWAGG   78 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD-~vElRlD~--l~---~~--~~---~~~l~~l~~~~~~PiI~T~R~~~eGG   78 (409)
                      .| +.+.|.+.+.++..+.++.+.+.|+| .||+-+-+  ..   .+  ++   .+.++.+++..++|+++-+|..    
T Consensus        94 ~p-~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~----  168 (311)
T 1jub_A           94 GP-IFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPY----  168 (311)
T ss_dssp             SC-CEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC----
T ss_pred             CC-EEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCC----
Confidence            44 45888999999999999998888999 99996531  00   00  11   1233444445589999988743    


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           79 LYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        79 ~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                         .+.++..++.+.+.+.|+|+|.+-
T Consensus       169 ---~~~~~~~~~a~~~~~~G~d~i~v~  192 (311)
T 1jub_A          169 ---FDLVHFDIMAEILNQFPLTYVNSV  192 (311)
T ss_dssp             ---CSHHHHHHHHHHHTTSCCCEEEEC
T ss_pred             ---CCHHHHHHHHHHHHHcCCcEEEec
Confidence               256677778888889999998873

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.71  E-value=0.097  Score=50.18  Aligned_cols=41  Identities=24%  Similarity=0.296  Sum_probs=36.4

Q ss_pred             CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|.| +||.|.+++..+...|++|+++.|+.++.+.+
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  181 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHA  181 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            578999999 79999999999999999999999998876644

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=92.68  E-value=0.085  Score=51.33  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=36.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++|++++|+.++
T Consensus       141 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~  180 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK  180 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            4678999999999999999999999999999999998653

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=92.67  E-value=0.13  Score=50.82  Aligned_cols=41  Identities=41%  Similarity=0.514  Sum_probs=36.2

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .|++|||+|+|++|.+++..+..+|+ +|+.++++.+|.+.+
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a  226 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLL  226 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence            57899999999999999988888999 999999998886543

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=92.64  E-value=1.5  Score=40.03  Aligned_cols=141  Identities=17%  Similarity=0.158  Sum_probs=87.4

Q ss_pred             HHHHhcCCCEEEEEecCCC-CCCCh-hHHHHHH---hcCCCcEEEEeccCCCCCCCCCCHHHHHHH---HHHHHHcCCcE
Q 015310           30 YQAKAEGADVVEIRLDCIN-NFQPG-KDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEA---LHLAEDLGADY  101 (409)
Q Consensus        30 ~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l---l~~~~~~g~dy  101 (409)
                      ..+.+.|||-|||.-++-. ...|+ ..++.++   +..++|+.+-+|++  ||-|-.++++...+   ++.+.+.|+|-
T Consensus        15 ~~A~~~GAdRIELc~~L~~GGlTPS~g~i~~~~~~~~~~~ipV~vMIRPR--~GdF~Ys~~E~~~M~~Di~~~~~~GadG   92 (224)
T 2bdq_A           15 TRLDKAIISRVELCDNLAVGGTTPSYGVIKEANQYLHEKGISVAVMIRPR--GGNFVYNDLELRIMEEDILRAVELESDA   92 (224)
T ss_dssp             GGCCTTTCCEEEEEBCGGGTCBCCCHHHHHHHHHHHHHTTCEEEEECCSS--SSCSCCCHHHHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHcCCCEEEEcCCcccCCcCCCHHHHHHHHHhhhhcCCceEEEECCC--CCCCcCCHHHHHHHHHHHHHHHHcCCCE
Confidence            3556789999999988754 33442 2445555   66799999999964  56666776554333   44677788988


Q ss_pred             EEEeccC-----ccchHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC--HhHHHHHH
Q 015310          102 VDFELKV-----ASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVND--ITEIARIF  173 (409)
Q Consensus       102 vDiEl~~-----~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~--~~D~~~ll  173 (409)
                      |=+=.-.     +.+..++|+.+- ++..  +.||- |+.+|. .+..+-++.+.++|.|=+==.--+.+  ..|.+.++
T Consensus        93 vV~G~Lt~dg~iD~~~~~~Li~~a-~~~~--vTFHRAFD~~~~-~d~~~ale~L~~lGv~rILTSG~~~~~~a~~g~~~L  168 (224)
T 2bdq_A           93 LVLGILTSNNHIDTEAIEQLLPAT-QGLP--LVFHMAFDVIPK-SDQKKSIDQLVALGFTRILLHGSSNGEPIIENIKHI  168 (224)
T ss_dssp             EEECCBCTTSSBCHHHHHHHHHHH-TTCC--EEECGGGGGSCT-TTHHHHHHHHHHTTCCEEEECSCSSCCCGGGGHHHH
T ss_pred             EEEeeECCCCCcCHHHHHHHHHHh-CCCe--EEEECchhccCC-cCHHHHHHHHHHcCCCEEECCCCCCCCcHHHHHHHH
Confidence            7663322     335566776331 3444  67786 888853 24455688888888653332222334  66665555


Q ss_pred             HHh
Q 015310          174 QLL  176 (409)
Q Consensus       174 ~~~  176 (409)
                      +-+
T Consensus       169 ~~L  171 (224)
T 2bdq_A          169 KAL  171 (224)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=92.63  E-value=0.12  Score=50.34  Aligned_cols=41  Identities=22%  Similarity=0.164  Sum_probs=35.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|.+|+|+|+|+.|.+++..+..+|++|+++.++.+|.+.+
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~  220 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEA  220 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence            57899999999999999998888999999999988776543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=92.62  E-value=0.11  Score=50.74  Aligned_cols=40  Identities=20%  Similarity=0.267  Sum_probs=35.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|++|||+|+|+.|.+++..+..+|++|+++.|+.++.+.
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~  218 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRED  218 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            4789999999999999999888899999999988777554

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=92.61  E-value=0.16  Score=49.24  Aligned_cols=40  Identities=30%  Similarity=0.395  Sum_probs=35.5

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+|||+|+|+.|.+++..+..+|+ +|++++++.+|.+.
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~  211 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK  211 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            47899999999999999998889999 99999999877553

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.59  E-value=0.14  Score=49.91  Aligned_cols=41  Identities=34%  Similarity=0.413  Sum_probs=35.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .|++|||+|+|++|.+++..++.+|+ .|+++.++.+|.+.+
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a  220 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFA  220 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            47899999999999999999999999 599999998876543

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=92.59  E-value=0.13  Score=50.07  Aligned_cols=41  Identities=27%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhC-CCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~-G~~i~v~nR~~~ka~~l  407 (409)
                      .|++|||+|+|++|.+++..+..+ |++|+++.++.+|.+.+
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~  227 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA  227 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence            478999999999999999888888 99999999998876543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=92.58  E-value=0.11  Score=51.79  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .++|+|+|+|.+|.+++..|++.|.+|+|+.|..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999999999999999999999864

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=92.58  E-value=0.074  Score=50.93  Aligned_cols=39  Identities=28%  Similarity=0.517  Sum_probs=30.5

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ...++++|||.|+ |+.|++++..|.+.|.+|+++.|+.+
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            4567889999997 88999999999999999999999753

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=92.57  E-value=0.12  Score=50.32  Aligned_cols=40  Identities=25%  Similarity=0.398  Sum_probs=36.5

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~  200 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP  200 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch
Confidence            4678999999999999999999999999999999998654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=92.57  E-value=0.16  Score=50.03  Aligned_cols=40  Identities=33%  Similarity=0.367  Sum_probs=35.5

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|++|||+|+|++|.+++..+..+|+ +|++++++.+|.+.
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~  225 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAH  225 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHH
Confidence            57899999999999999998889999 89999999887654

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=92.49  E-value=0.16  Score=49.70  Aligned_cols=40  Identities=30%  Similarity=0.427  Sum_probs=35.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|++|||+|+|+.|.+++..+..+|+ +|+++.++.+|.+.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~  235 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPK  235 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence            57899999999999999998999999 89999998887654

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=92.45  E-value=1.4  Score=39.30  Aligned_cols=110  Identities=15%  Similarity=0.126  Sum_probs=68.0

Q ss_pred             eeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEe-cCC-CCC-CC-hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHH
Q 015310           11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DCI-NNF-QP-GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHK   86 (409)
Q Consensus        11 ~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D~l-~~~-~~-~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~   86 (409)
                      .+|+-+|..-+..++.+.++.+.+.|+|++++|+ |-- ... .. .+.++++++.++.|+.+.+--.        +.++
T Consensus         4 ~~~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~--------d~~~   75 (220)
T 2fli_A            4 LKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVV--------DPER   75 (220)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESS--------SGGG
T ss_pred             cEEEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEeec--------CHHH
Confidence            4688889999998888888888888999999994 532 211 11 3456677665677877765422        1122


Q ss_pred             HHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEecc
Q 015310           87 RLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN  131 (409)
Q Consensus        87 ~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H  131 (409)
                      +   ++.+.+.|+|+|=+=....+.....+...++.+.++++|.+
T Consensus        76 ~---i~~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~  117 (220)
T 2fli_A           76 Y---VEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVIN  117 (220)
T ss_dssp             G---HHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEEC
T ss_pred             H---HHHHHHcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEc
Confidence            3   36677789999866333222211111122234677888874

>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}

Probab=92.44  E-value=6.2  Score=37.79  Aligned_cols=168  Identities=12%  Similarity=0.147  Sum_probs=97.6

Q ss_pred             CeeEEEeecc------------CCHHHHHHHHHHHHhcCCCEEEEEecC-CCCC---CC---hhHHHHHHhcCCCcEEEE
Q 015310           10 TTMICAPLMA------------QSVEQVLSNMYQAKAEGADVVEIRLDC-INNF---QP---GKDLEIILTKKPLPVLIV   70 (409)
Q Consensus        10 ~~~icv~l~~------------~~~~e~~~~~~~~~~~~aD~vElRlD~-l~~~---~~---~~~l~~l~~~~~~PiI~T   70 (409)
                      ...|++.+++            -|.+|+.+++.++.+.||-++=+-+-- -+..   ++   .+.+..+|+.++..|.+|
T Consensus         7 kvIIt~A~tGa~~t~~~~P~lPvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~iI~~T   86 (311)
T 3e02_A            7 KIIITCAVTGSIHTPTMSPYLPITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDAILNIT   86 (311)
T ss_dssp             SBCEEEECSCSSSCGGGCTTSCCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCCEEEEC
T ss_pred             CEEEEEcCCCCcCCcccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCcEEEEC
Confidence            4566667765            245899999999999999999877654 2211   11   245566666565444444


Q ss_pred             eccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccc----hHHHHHhccCCCc-EEEEecc--CCCCCCCHhHHH
Q 015310           71 YRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASN----ILGKQYSSHQSGT-RFIVSCN--LDCETPSEEDLG  143 (409)
Q Consensus        71 ~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~----~~~~l~~~~~~~~-kiI~S~H--~f~~tp~~~~l~  143 (409)
                      .     ||....+.++|++.+..   +.+|..-+...+..-    ..+++...+...- ..+-.+.  .|..||  +.+.
T Consensus        87 T-----gg~~~~~~eerla~~~~---~~Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~~n~~--~~i~  156 (311)
T 3e02_A           87 T-----GGGLGMSLDERLAPARA---ARPEVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILSNTF--SQIE  156 (311)
T ss_dssp             S-----SCSTTCCHHHHHHHHHH---HCCSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEECCCH--HHHH
T ss_pred             C-----CCCCCCCHHHHHHHHHh---cCCCeeeecCCCceeccccchhhccccccccchhhcccCCCceecCCH--HHHH
Confidence            2     45555678888776643   368887776443210    0000000000000 0000000  133343  5789


Q ss_pred             HHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccC---CCCEEEEEcCc
Q 015310          144 YLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC---QVPIIAYSVGE  190 (409)
Q Consensus       144 ~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~---~~p~i~~~MG~  190 (409)
                      +.++.|++.|   +|.=...-|..++..+..+..+-   ....+-+.||.
T Consensus       157 ~~~~~~~e~G---i~pE~e~fd~g~l~~~~~l~~~Gl~~~p~~~~~vlGv  203 (311)
T 3e02_A          157 RGMTELGASG---TRFEFECYDVGHLYNLAHFVDRKLVEPPFFLQCVFGI  203 (311)
T ss_dssp             HHHHHHHTTT---CEEEEEECSHHHHHHHHHHHHTTSSCSCEEEEEEECC
T ss_pred             HHHHHHHHcC---CeEEEEEEcHHHHHHHHHHHHcCCCCCCeEEEEEecC
Confidence            9999999999   57777777999987777775432   33466677764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=92.44  E-value=0.16  Score=49.58  Aligned_cols=41  Identities=29%  Similarity=0.505  Sum_probs=36.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .|++|||+|+|+.|.+++..+..+|+ +|++++|+.+|.+.+
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~  232 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA  232 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            57899999999999999999999999 899999988876543

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=92.39  E-value=0.14  Score=49.51  Aligned_cols=41  Identities=15%  Similarity=0.080  Sum_probs=35.9

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhC--CCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~--G~~i~v~nR~~~ka~~l  407 (409)
                      .|++|||+|+|+.|.+++..+..+  |++|+++.++.+|.+.+
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~  212 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFA  212 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence            688999999999999999888888  99999999998876543

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=92.37  E-value=0.13  Score=50.32  Aligned_cols=39  Identities=28%  Similarity=0.326  Sum_probs=36.0

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++|+.++|+..
T Consensus       169 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~  207 (345)
T 4g2n_A          169 MGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRL  207 (345)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             cccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCc
Confidence            568899999999999999999999999999999999853

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=92.33  E-value=0.17  Score=49.42  Aligned_cols=40  Identities=28%  Similarity=0.465  Sum_probs=35.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|++|||+|+|+.|.+++..+..+|+ +|++++++.+|.+.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~  232 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEK  232 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence            57899999999999999999999999 89999998887654

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=92.28  E-value=0.12  Score=50.63  Aligned_cols=38  Identities=26%  Similarity=0.289  Sum_probs=35.5

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++|+.++|+.
T Consensus       160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~  197 (351)
T 3jtm_A          160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQ  197 (351)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSC
T ss_pred             ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCc
Confidence            46889999999999999999999999999999999975

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=92.28  E-value=0.13  Score=49.34  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      .+.|+++.|+|.|.+|++++..|...|++|++++|+.+
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~  158 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK  158 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence            57899999999999999999999999999999999864

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=92.28  E-value=0.14  Score=49.71  Aligned_cols=41  Identities=20%  Similarity=0.176  Sum_probs=36.3

Q ss_pred             CCCEEEEE-echhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLA-GAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvl-GaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|. |+||.|.+++..+...|++|+++.|+.++.+.+
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  208 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEAC  208 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            57899999 579999999999999999999999998887654

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=92.28  E-value=0.11  Score=50.00  Aligned_cols=40  Identities=25%  Similarity=0.273  Sum_probs=34.9

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCC----CeEEEEeCChH--HHHhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDFE--QSLLL  407 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G----~~i~v~nR~~~--ka~~l  407 (409)
                      ..++.|||+|.+|.+++..|.+.|    .+|++++|+.+  +++.+
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l   67 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSAL   67 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHH
Confidence            347999999999999999999999    58999999986  66655

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=92.24  E-value=0.99  Score=44.01  Aligned_cols=158  Identities=16%  Similarity=0.217  Sum_probs=103.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .|.+..++|++++.+.|||+|-+=+.-.   +..+.+..+++..++|++.-+=         .+   | ++...+++.|+
T Consensus        43 ~D~~atv~Qi~~l~~aG~diVRvavp~~---~~a~al~~I~~~~~vPlvaDiH---------f~---~-~lal~a~e~G~  106 (366)
T 3noy_A           43 HDVEATLNQIKRLYEAGCEIVRVAVPHK---EDVEALEEIVKKSPMPVIADIH---------FA---P-SYAFLSMEKGV  106 (366)
T ss_dssp             TCHHHHHHHHHHHHHTTCCEEEEECCSH---HHHHHHHHHHHHCSSCEEEECC---------SC---H-HHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCCCCh---HHHHHHHHHHhcCCCCEEEeCC---------CC---H-HHHHHHHHhCC
Confidence            4678889999999999999998766532   2245677777788999997531         11   2 34456888899


Q ss_pred             cEEEEeccCc--cchHHHHH-hccCCCcEE-EE-eccCCC---------CCCC--HhHHHHHHHHHHHcCCCEEEEEeec
Q 015310          100 DYVDFELKVA--SNILGKQY-SSHQSGTRF-IV-SCNLDC---------ETPS--EEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus       100 dyvDiEl~~~--~~~~~~l~-~~~~~~~ki-I~-S~H~f~---------~tp~--~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      |-+-|.-...  ++.+++++ .+++.++.+ |+ .+=..+         .||.  .+...+..+.+.++|-+=+++-..+
T Consensus       107 dklRINPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~  186 (366)
T 3noy_A          107 HGIRINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKG  186 (366)
T ss_dssp             SEEEECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred             CeEEECCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeec
Confidence            8877653332  23445555 344445543 32 322221         2431  2445667788889998888899998


Q ss_pred             CCHhHHHHHHHHhc-cCCCCEEEEEcCccchh
Q 015310          164 NDITEIARIFQLLS-HCQVPIIAYSVGERGLV  194 (409)
Q Consensus       164 ~~~~D~~~ll~~~~-~~~~p~i~~~MG~~G~~  194 (409)
                      .+..+.....+.+. +.+.|+ -++.++.|..
T Consensus       187 S~v~~~i~ayr~la~~~dyPL-HlGvTEAG~~  217 (366)
T 3noy_A          187 SDVLQNVRANLIFAERTDVPL-HIGITEAGMG  217 (366)
T ss_dssp             SSHHHHHHHHHHHHHHCCCCE-EECCSSCCSH
T ss_pred             CChHHHHHHHHHHHhccCCCE-EEccCCCCCC
Confidence            88888777665544 458886 5777776654

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=92.12  E-value=3.2  Score=37.66  Aligned_cols=88  Identities=20%  Similarity=0.136  Sum_probs=47.7

Q ss_pred             CeeEEEeecc---CCHHHHHHHHHHHHhcCCCEEEEEecCCC----CCCChhHHHHHHhcCCCcEE-EEeccCCCCCCCC
Q 015310           10 TTMICAPLMA---QSVEQVLSNMYQAKAEGADVVEIRLDCIN----NFQPGKDLEIILTKKPLPVL-IVYRPKWAGGLYE   81 (409)
Q Consensus        10 ~~~icv~l~~---~~~~e~~~~~~~~~~~~aD~vElRlD~l~----~~~~~~~l~~l~~~~~~PiI-~T~R~~~eGG~~~   81 (409)
                      +.++++....   .+.++.++   .+.+.|.|.||++.+...    +....+++.++.+..++.+. ++.-..    .-.
T Consensus         6 ~m~lg~~~~~~~~~~~~~~l~---~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~----~~~   78 (272)
T 2q02_A            6 KTRFCINRKIAPGLSIEAFFR---LVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYP----FNQ   78 (272)
T ss_dssp             GGGEEEEGGGCTTSCHHHHHH---HHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEETT----TTS
T ss_pred             ehhhhhcccccCCCCHHHHHH---HHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhhhc----cCC
Confidence            3456665433   34566655   445679999999987542    11223456666666777763 222110    101


Q ss_pred             CCH---HHHHHHHHHHHHcCCcEEEE
Q 015310           82 GDE---HKRLEALHLAEDLGADYVDF  104 (409)
Q Consensus        82 ~~~---~~~~~ll~~~~~~g~dyvDi  104 (409)
                      .++   +...+.++.+.++|+.+|=+
T Consensus        79 ~~~~~~~~~~~~i~~a~~lG~~~v~~  104 (272)
T 2q02_A           79 LTEEVVKKTEGLLRDAQGVGARALVL  104 (272)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             cHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence            122   22344556666778777765

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=92.11  E-value=2  Score=38.49  Aligned_cols=118  Identities=18%  Similarity=0.154  Sum_probs=62.0

Q ss_pred             eeEEEeeccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC---hhHHHHHH---hcCCCcEEEEeccCCCCCCCCCC
Q 015310           11 TMICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP---GKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGD   83 (409)
Q Consensus        11 ~~icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~---~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~   83 (409)
                      +++|.-.... ..++..+.++.+.+.|+|+|++|.-.......   .+.+..+.   +..+.|+++.             
T Consensus        18 ~~i~~It~~~~~~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~-------------   84 (227)
T 2tps_A           18 LSVYFIMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKAQAACREAGVPFIVN-------------   84 (227)
T ss_dssp             TTEEEEECGGGCSSCHHHHHHHHHHHTCSEEEECCCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEE-------------
T ss_pred             CCEEEEECCccccchHHHHHHHHHHCCCCEEEEecCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEc-------------
Confidence            4577643321 10125566777778899999999533222221   11122222   2346888873             


Q ss_pred             HHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           84 EHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        84 ~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                        ++   ++.+.+.|+++|=+.-... + +.++...... ..+-+|.|+      .++    +.++.+.|+|.+++
T Consensus        85 --~~---~~~a~~~gad~v~l~~~~~-~-~~~~~~~~g~-~~~~~s~~t------~~e----~~~a~~~g~d~v~~  142 (227)
T 2tps_A           85 --DD---VELALNLKADGIHIGQEDA-N-AKEVRAAIGD-MILGVSAHT------MSE----VKQAEEDGADYVGL  142 (227)
T ss_dssp             --SC---HHHHHHHTCSEEEECTTSS-C-HHHHHHHHTT-SEEEEEECS------HHH----HHHHHHHTCSEEEE
T ss_pred             --CH---HHHHHHcCCCEEEECCCcc-C-HHHHHHhcCC-cEEEEecCC------HHH----HHHHHhCCCCEEEE
Confidence              11   2356678999987754332 2 2333321112 344455553      233    33455679999997

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=92.10  E-value=0.13  Score=50.12  Aligned_cols=41  Identities=24%  Similarity=0.266  Sum_probs=36.1

Q ss_pred             CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|+| +||.|.+++..+...|++|+++.|+.++.+.+
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~  204 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFL  204 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            578999999 69999999999999999999999998776543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=92.07  E-value=0.13  Score=50.48  Aligned_cols=40  Identities=38%  Similarity=0.502  Sum_probs=35.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+|||+|+|++|.+++..+..+|+ +|++++++.+|.+.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~  233 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYET  233 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence            57899999999999999999999999 89999998887654

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=92.07  E-value=0.15  Score=49.74  Aligned_cols=40  Identities=25%  Similarity=0.385  Sum_probs=35.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|++|||+|+|+.|.+++..++.+|+ +|+++.++.+|.+.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~  231 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPK  231 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence            57899999999999999988888999 89999998877654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=92.06  E-value=0.22  Score=47.94  Aligned_cols=40  Identities=28%  Similarity=0.294  Sum_probs=35.1

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL  405 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~  405 (409)
                      ..|++++|.|+||.+..++..++.+|+ .+++++++.+|.+
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~  199 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLA  199 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHH
Confidence            357899999999999999999999999 6788899887754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=92.02  E-value=0.2  Score=49.01  Aligned_cols=40  Identities=25%  Similarity=0.264  Sum_probs=35.6

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|++|||+|+|++|.+++..+..+|+ +|+++.++.+|.+.
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~  222 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRL  222 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            47899999999999999999999999 89999999887653

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=91.96  E-value=0.13  Score=50.72  Aligned_cols=39  Identities=15%  Similarity=0.233  Sum_probs=35.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~~~  402 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++ |++++|+..
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~  199 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQAL  199 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCC
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCcc
Confidence            467899999999999999999999999996 999999863

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=91.93  E-value=0.094  Score=55.25  Aligned_cols=36  Identities=42%  Similarity=0.625  Sum_probs=31.4

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeC
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR  399 (409)
                      ..++||.+||-|+ ||.|++++..|++.|++|++++|
T Consensus        15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r   51 (613)
T 3oml_A           15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDL   51 (613)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            5688999999996 78999999999999999999987

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.93  E-value=0.11  Score=50.05  Aligned_cols=41  Identities=12%  Similarity=0.178  Sum_probs=35.4

Q ss_pred             CCCEEEEEech-hHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaG-Gaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++++|+|+| |.|.+++..+...|++|+++.|+.++.+.+
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  185 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEEL  185 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            57899999997 899999998889999999999987776543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=91.92  E-value=0.15  Score=50.02  Aligned_cols=34  Identities=21%  Similarity=0.357  Sum_probs=31.4

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+|+|+|+|.+|.+++..|++.|.+|+|+.|..
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~   59 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN   59 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3589999999999999999999999999999864

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=91.89  E-value=1.2  Score=42.41  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=63.8

Q ss_pred             CHHHHHHHHHHHHhcCCCEE-EEE----ec-CCCC---CCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVV-EIR----LD-CINN---FQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~v-ElR----lD-~l~~---~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      +..++.   +.+.+.|+|+| +++    .+ .+..   ....+.+..+++..++|++.-.|...            .+..
T Consensus        29 ~~~~~a---~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~------------~~~~   93 (305)
T 2nv1_A           29 INAEQA---KIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGH------------IVEA   93 (305)
T ss_dssp             SSHHHH---HHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTC------------HHHH
T ss_pred             CHHHHH---HHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccc------------hHHH
Confidence            444444   44456799999 775    22 1221   11234667777777999998776421            2234


Q ss_pred             HHHHHcCCcEEEEeccC-ccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           92 HLAEDLGADYVDFELKV-ASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~-~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      +.+.+.|+|.|+ .... ..+.+.+++..+.-+..++++.|+      .++.   . +..+.|+|++++-
T Consensus        94 ~~~~a~GAd~V~-~~~~l~~~~~~~~i~~~~~g~~v~~~~~~------~~e~---~-~a~~~Gad~V~~~  152 (305)
T 2nv1_A           94 RVLEAMGVDYID-ESEVLTPADEEFHLNKNEYTVPFVCGCRD------LGEA---T-RRIAEGASMLRTK  152 (305)
T ss_dssp             HHHHHHTCSEEE-ECTTSCCSCSSCCCCGGGCSSCEEEEESS------HHHH---H-HHHHTTCSEEEEC
T ss_pred             HHHHHCCCCEEE-EeccCCHHHHHHHHHHhccCCcEEEEeCC------HHHH---H-HHHHCCCCEEEec
Confidence            455568999997 3221 111122222223446788988885      2333   2 2347899999884

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=91.89  E-value=7.2  Score=36.62  Aligned_cols=149  Identities=10%  Similarity=0.142  Sum_probs=90.0

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCC-----CChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNF-----QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAE   95 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~   95 (409)
                      +.++.++-++.+.+.|.+.||.=-=.-...     ++.+.++.+.+..+.|+..-+ .         +    .+-++.++
T Consensus        24 ~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~-~---------n----~~~i~~a~   89 (295)
T 1ydn_A           24 PTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLV-P---------N----MKGYEAAA   89 (295)
T ss_dssp             CHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEEC-S---------S----HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEe-C---------C----HHHHHHHH
Confidence            557777777777788999999853111110     112233333333356664433 1         1    24567888


Q ss_pred             HcCCcEEEEeccCc------------cchH---HHHH-hccCCCcEEE--Eecc----CCCCCCCHhHHHHHHHHHHHcC
Q 015310           96 DLGADYVDFELKVA------------SNIL---GKQY-SSHQSGTRFI--VSCN----LDCETPSEEDLGYLVSRMQATG  153 (409)
Q Consensus        96 ~~g~dyvDiEl~~~------------~~~~---~~l~-~~~~~~~kiI--~S~H----~f~~tp~~~~l~~~~~~~~~~g  153 (409)
                      +.|++.|-|-....            ++.+   .+.+ .+++.+.++-  +|+=    +...+ +.+++.++++.+.+.|
T Consensus        90 ~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~-~~~~~~~~~~~~~~~G  168 (295)
T 1ydn_A           90 AAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPV-TPQAVASVTEQLFSLG  168 (295)
T ss_dssp             HTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEEC-CHHHHHHHHHHHHHHT
T ss_pred             HCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCC-CHHHHHHHHHHHHhcC
Confidence            89999888875332            1122   2223 4566788876  3321    11122 3578999999999999


Q ss_pred             CCEEEEEeec--CCHhHHHHHHHHhccC-C-CCEE
Q 015310          154 ADIIKLVFSV--NDITEIARIFQLLSHC-Q-VPII  184 (409)
Q Consensus       154 aDivKia~~~--~~~~D~~~ll~~~~~~-~-~p~i  184 (409)
                      +|.+-++-+.  .++.++.++++.+.+. + .|+.
T Consensus       169 ~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~  203 (295)
T 1ydn_A          169 CHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLA  203 (295)
T ss_dssp             CSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEE
T ss_pred             CCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEE
Confidence            9999998433  3688888888876543 3 4554

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=91.87  E-value=2.7  Score=40.39  Aligned_cols=145  Identities=17%  Similarity=0.216  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCC-C-------ChhHHHHH-------HhcCCCcEEEEeccCCCCCCCCCCH
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNF-Q-------PGKDLEII-------LTKKPLPVLIVYRPKWAGGLYEGDE   84 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~-~-------~~~~l~~l-------~~~~~~PiI~T~R~~~eGG~~~~~~   84 (409)
                      .+.+++++.+++..+.|||+|.+=...-.+. .       ..+++.++       ++..+.||-+-              
T Consensus        46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISID--------------  111 (314)
T 3tr9_A           46 LDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVD--------------  111 (314)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEE--------------
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEe--------------
Confidence            4678899999999999999998876543321 1       12333332       23345554322              


Q ss_pred             HHHHHHHHHHHHcCCcEE-EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCC--------------HhHHHHHHHHH
Q 015310           85 HKRLEALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPS--------------EEDLGYLVSRM  149 (409)
Q Consensus        85 ~~~~~ll~~~~~~g~dyv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~--------------~~~l~~~~~~~  149 (409)
                      ..+-+..+++++.|+++| ||--...++.++ +.  .+.+..+|+. | ..++|.              .+.+.+.++.+
T Consensus       112 T~~~~Va~aAl~aGa~iINDVsg~~~~~m~~-v~--a~~g~~vVlM-h-~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a  186 (314)
T 3tr9_A          112 TSRPRVMREAVNTGADMINDQRALQLDDALT-TV--SALKTPVCLM-H-FPSETRKPGSTTHFYFLQSVKKELQESIQRC  186 (314)
T ss_dssp             CSCHHHHHHHHHHTCCEEEETTTTCSTTHHH-HH--HHHTCCEEEE-C-CCCTTCCTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCEEEECCCCCchHHHH-HH--HHhCCeEEEE-C-CCCCCcccccccccchHHHHHHHHHHHHHHH
Confidence            133467888999998876 454333333333 22  2356778875 4 345664              23467778889


Q ss_pred             HHcCCCEEEEE-----e---ecCCHhHHHHHHHHhcc---CCCCE
Q 015310          150 QATGADIIKLV-----F---SVNDITEIARIFQLLSH---CQVPI  183 (409)
Q Consensus       150 ~~~gaDivKia-----~---~~~~~~D~~~ll~~~~~---~~~p~  183 (409)
                      .+.|.+-=+|.     .   ..++.++++.+++-+..   .+.|+
T Consensus       187 ~~~GI~~~~IilDPG~G~~~F~Kt~~~n~~lL~~l~~l~~lg~Pv  231 (314)
T 3tr9_A          187 KKAGISEDRIIIDPGFGQGNYGKNVSENFYLLNKLPEFVAMGLPV  231 (314)
T ss_dssp             HHTTCCGGGEEEECCCCSGGGCCCHHHHHHHHHTTHHHHTTSSCB
T ss_pred             HHcCCCHhHEEEeCCCCchhhcCCHHHHHHHHHHHHHHhcCCCCE
Confidence            99996422333     2   56788889888877543   36674

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=91.86  E-value=0.17  Score=49.42  Aligned_cols=40  Identities=33%  Similarity=0.542  Sum_probs=35.5

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|++|||+|+|++|.+++..+..+|+ +|++++++.+|.+.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~  230 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAR  230 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence            57899999999999999998888999 89999998887654

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=91.83  E-value=0.1  Score=52.79  Aligned_cols=35  Identities=31%  Similarity=0.325  Sum_probs=32.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++++|||+|.+|.++++.|.+.|.+|+|+.+..
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~  155 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYD  155 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            46789999999999999999999999999999863

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=91.82  E-value=0.13  Score=50.19  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=36.7

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++|+.++|+.++
T Consensus       144 ~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~  183 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP  183 (343)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG
T ss_pred             cccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh
Confidence            4678999999999999999999999999999999998654

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=91.80  E-value=1.7  Score=39.72  Aligned_cols=112  Identities=11%  Similarity=0.081  Sum_probs=73.2

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecC--C-CCCCC-hhHHHHHHhc--CCCcEEEEeccCCCCCCCCC
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDC--I-NNFQP-GKDLEIILTK--KPLPVLIVYRPKWAGGLYEG   82 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~--l-~~~~~-~~~l~~l~~~--~~~PiI~T~R~~~eGG~~~~   82 (409)
                      .+++|+-+|..-|...+.++++.+.+.|+|++.+++=-  | ++..- .+.++.+++.  .++|+-+.+-..        
T Consensus         3 ~~~~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~--------   74 (228)
T 3ovp_A            3 SGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVS--------   74 (228)
T ss_dssp             -CCEEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECS--------
T ss_pred             CCcEeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeC--------
Confidence            45889999999999989888988888899999887631  1 22221 2467777766  588988877642        


Q ss_pred             CHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEecc
Q 015310           83 DEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN  131 (409)
Q Consensus        83 ~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H  131 (409)
                      +.+.|   ++.+.+.|+|+|=+=....+...+.+...++.+.++.++.+
T Consensus        75 ~p~~~---i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~  120 (228)
T 3ovp_A           75 KPEQW---VKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIK  120 (228)
T ss_dssp             CGGGG---HHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEEC
T ss_pred             CHHHH---HHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEc
Confidence            23334   45567789999887554433322222233445666666665

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=91.79  E-value=2.1  Score=39.54  Aligned_cols=108  Identities=17%  Similarity=0.091  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCC------CCCCh------hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDCIN------NFQPG------KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~l~------~~~~~------~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (409)
                      +++...+++++..|+++|=+|---..      ..+..      +++..+.+..+.|+|+.-|               .+ 
T Consensus        43 ~~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd~---------------~~-  106 (243)
T 3o63_A           43 GDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDR---------------AD-  106 (243)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC---------------HH-
T ss_pred             chHHHHHHHHHHCCCCEEEEccCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeCH---------------HH-
Confidence            34677777888899999999975411      01121      2233333556899998632               22 


Q ss_pred             HHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           91 LHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        91 l~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                        .+.+.|+|.|=+.-....  ...++.....+..+-+|.|+      .+|    +.++.+.|+|++.+-
T Consensus       107 --lA~~~gAdGVHLg~~dl~--~~~~r~~~~~~~~iG~S~ht------~~E----a~~A~~~GaDyI~vg  162 (243)
T 3o63_A          107 --IARAAGADVLHLGQRDLP--VNVARQILAPDTLIGRSTHD------PDQ----VAAAAAGDADYFCVG  162 (243)
T ss_dssp             --HHHHHTCSEEEECTTSSC--HHHHHHHSCTTCEEEEEECS------HHH----HHHHHHSSCSEEEEC
T ss_pred             --HHHHhCCCEEEecCCcCC--HHHHHHhhCCCCEEEEeCCC------HHH----HHHHhhCCCCEEEEc
Confidence              266778999887654432  11222222456667789885      234    344556899999984

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.77  E-value=0.17  Score=48.93  Aligned_cols=40  Identities=23%  Similarity=0.261  Sum_probs=35.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+|||+|+|++|.+++..+...|+ +|++++++.+|.+.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~  206 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDI  206 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence            47899999999999999999999999 89999999877543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=91.74  E-value=0.22  Score=49.29  Aligned_cols=40  Identities=28%  Similarity=0.303  Sum_probs=35.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+|||+|+|++|.+++..+..+|+ +|++++++.+|.+.
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~  253 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNL  253 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence            57899999999999999999999999 89999999887654

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=91.74  E-value=6.6  Score=37.32  Aligned_cols=155  Identities=15%  Similarity=0.171  Sum_probs=95.9

Q ss_pred             CeeEEEeeccC-----------CHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCChhHHHHHH-------hcCCCcE
Q 015310           10 TTMICAPLMAQ-----------SVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLEIIL-------TKKPLPV   67 (409)
Q Consensus        10 ~~~icv~l~~~-----------~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~~~~~~l~~l~-------~~~~~Pi   67 (409)
                      +|+|.--|.-+           +.+++++.+++..+.|||+|.+-...-..    .+..+++.++.       +..+.|+
T Consensus        39 ~~~iMgilNvTPDSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~~vpi  118 (297)
T 1tx2_A           39 KTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPI  118 (297)
T ss_dssp             SCEEEEECCCCCCTTCSSCBHHHHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHSCSCE
T ss_pred             CCEEEEEEeCCCCccccCCccCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            56665555432           36788888999899999999888765321    22234444332       3347776


Q ss_pred             EEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeccC-ccchHHHHHhccCCCcEEEEeccCCCCCCC-------
Q 015310           68 LIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKV-ASNILGKQYSSHQSGTRFIVSCNLDCETPS-------  138 (409)
Q Consensus        68 I~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv-DiEl~~-~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~-------  138 (409)
                      .+--              .+-+..+++++.|+++| ||-... .++.++ +.  .+.+..+|+.+ . .++|.       
T Consensus       119 SIDT--------------~~~~V~~aAl~aGa~iINdvsg~~~d~~m~~-~a--a~~g~~vVlmh-~-~G~p~y~d~v~e  179 (297)
T 1tx2_A          119 SIDT--------------YKAEVAKQAIEAGAHIINDIWGAKAEPKIAE-VA--AHYDVPIILMH-N-RDNMNYRNLMAD  179 (297)
T ss_dssp             EEEC--------------SCHHHHHHHHHHTCCEEEETTTTSSCTHHHH-HH--HHHTCCEEEEC-C-CSCCCCSSHHHH
T ss_pred             EEeC--------------CCHHHHHHHHHcCCCEEEECCCCCCCHHHHH-HH--HHhCCcEEEEe-C-CCCCCcchHHHH
Confidence            5432              23457788888898887 554433 333333 22  23567777774 3 67777       


Q ss_pred             -HhHHHHHHHHHHHcCCCEEEEEe-----ecCCHhHHHHHHHHhccC---CCCE
Q 015310          139 -EEDLGYLVSRMQATGADIIKLVF-----SVNDITEIARIFQLLSHC---QVPI  183 (409)
Q Consensus       139 -~~~l~~~~~~~~~~gaDivKia~-----~~~~~~D~~~ll~~~~~~---~~p~  183 (409)
                       .+.+.+.++.+.+.|-+-=+|..     ..++.++++.+++-+...   +.|+
T Consensus       180 v~~~l~~~i~~a~~~GI~~~~IilDPg~Gfgk~~~~n~~ll~~l~~l~~lg~Pv  233 (297)
T 1tx2_A          180 MIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPV  233 (297)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB
T ss_pred             HHHHHHHHHHHHHHcCCChhcEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCE
Confidence             35577788888888854223554     356788898888876543   5564

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=91.72  E-value=0.22  Score=48.86  Aligned_cols=41  Identities=32%  Similarity=0.337  Sum_probs=36.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .|++|||+|+|+.|.+++..+..+|+ +|+++.|+.++.+.+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~  236 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA  236 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH
Confidence            47899999999999999999999995 999999998876543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=91.70  E-value=0.11  Score=49.03  Aligned_cols=34  Identities=12%  Similarity=0.176  Sum_probs=31.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..++++|||+|.+|.++++.|.+.|.+|+|+.+.
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~   54 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGM   54 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            3478999999999999999999999999999984

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=91.69  E-value=3.6  Score=38.58  Aligned_cols=106  Identities=20%  Similarity=0.228  Sum_probs=61.8

Q ss_pred             EeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHHhc-CCCcEEEE-e
Q 015310           15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTK-KPLPVLIV-Y   71 (409)
Q Consensus        15 v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~~~-~~~PiI~T-~   71 (409)
                      ++.-.|+.+...+.++.+.+.|+|+||+=+-+-++..+.                     +.++++++. .++|+++- +
T Consensus        26 i~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y  105 (271)
T 3nav_A           26 VTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMY  105 (271)
T ss_dssp             EETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred             EeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            344568889998888888888999999999874433221                     234445544 68898764 3


Q ss_pred             ccC-CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEe
Q 015310           72 RPK-WAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVS  129 (409)
Q Consensus        72 R~~-~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S  129 (409)
                      -.. -..|        ..++++.+.+.|+|.+=+ .+.+.+-..++. ..++.+...|.-
T Consensus       106 ~n~v~~~g--------~~~f~~~~~~aGvdGvIi-pDlp~ee~~~~~~~~~~~gl~~I~l  156 (271)
T 3nav_A          106 ANLVYARG--------IDDFYQRCQKAGVDSVLI-ADVPTNESQPFVAAAEKFGIQPIFI  156 (271)
T ss_dssp             HHHHHHTC--------HHHHHHHHHHHTCCEEEE-TTSCGGGCHHHHHHHHHTTCEEEEE
T ss_pred             CcHHHHHh--------HHHHHHHHHHCCCCEEEE-CCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            211 0111        145677888889887544 222222222333 234456665533

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=91.68  E-value=0.71  Score=41.83  Aligned_cols=125  Identities=17%  Similarity=0.154  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCCC-CC---hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           24 QVLSNMYQAKAEGADVVEIRLDCINNF-QP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        24 e~~~~~~~~~~~~aD~vElRlD~l~~~-~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +....++.+.+.|+|.++++ |.-... ..   .+.++.+++..++|+++.      ||..  +.++    .+.+++.|+
T Consensus        34 ~~~~~a~~~~~~G~d~i~v~-~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~------g~i~--~~~~----~~~~~~~Ga  100 (253)
T 1h5y_A           34 DPVEMAVRYEEEGADEIAIL-DITAAPEGRATFIDSVKRVAEAVSIPVLVG------GGVR--SLED----ATTLFRAGA  100 (253)
T ss_dssp             CHHHHHHHHHHTTCSCEEEE-ECCCCTTTHHHHHHHHHHHHHHCSSCEEEE------SSCC--SHHH----HHHHHHHTC
T ss_pred             cHHHHHHHHHHcCCCEEEEE-eCCccccCCcccHHHHHHHHHhcCCCEEEE------CCCC--CHHH----HHHHHHcCC
Confidence            45555666677899999997 332211 11   234556666678999974      2322  2332    245566799


Q ss_pred             cEEEEeccC--ccchHHHHHhccC-CCcEEEEeccC-----CCCCC-----CHhHHHHHHHHHHHcCCCEEEEEe
Q 015310          100 DYVDFELKV--ASNILGKQYSSHQ-SGTRFIVSCNL-----DCETP-----SEEDLGYLVSRMQATGADIIKLVF  161 (409)
Q Consensus       100 dyvDiEl~~--~~~~~~~l~~~~~-~~~kiI~S~H~-----f~~tp-----~~~~l~~~~~~~~~~gaDivKia~  161 (409)
                      |.|.+--..  ..+.+.++..... ....+-++.+.     .-.+.     +..+..+.++.+.+.|+|.+.+-.
T Consensus       101 d~V~i~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~  175 (253)
T 1h5y_A          101 DKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTS  175 (253)
T ss_dssp             SEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEE
T ss_pred             CEEEEChHHhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEec
Confidence            999975433  2233333332111 11333334331     00000     112455667788888999988753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=91.65  E-value=0.2  Score=48.96  Aligned_cols=40  Identities=33%  Similarity=0.365  Sum_probs=35.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|++|||+|+|+.|.+++..+..+|+ +|++++++.+|.+.
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~  230 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLEL  230 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence            47899999999999999988888999 79999999887654

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=91.61  E-value=1.7  Score=40.61  Aligned_cols=127  Identities=15%  Similarity=0.174  Sum_probs=70.4

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHH---hcCCCcEEEEeccCCCCCCCCCCHH
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEH   85 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~   85 (409)
                      +.|.|..+-..++.++..+.+.   ..|+|++|+=+-+.+....  .+..++   +..+.|++...     -|.  .+.+
T Consensus        12 ~~~~~~~t~g~p~~~~~~~~l~---~~Gad~ielg~pr~~~~g~--~~~~~~~~l~~~~~~~~pn~-----~~~--~~~~   79 (264)
T 1xm3_A           12 QSRLLLGTGKYPSFDIQKEAVA---VSESDILTFAVRRMNIFEA--SQPNFLEQLDLSKYTLLPNT-----AGA--STAE   79 (264)
T ss_dssp             SCCEEEECSCSSCHHHHHHHHH---HHTCSEEEEETTSSTTC---------CTTCCGGGSEEEEEC-----TTC--SSHH
T ss_pred             cCCCEEEecCCCCHHHHHHHHH---HcCCeEEEEcccccccCCC--CHHHHHHHHHhcCCeEcCCc-----ccc--CCHH
Confidence            4678888889999999876454   4599999997643321011  122222   22355655432     233  2455


Q ss_pred             HHHHHHHHHHHcC-CcEEEEeccCcc----chHHHHH-hccC---CCcEEE-EeccCCCCCCCHhHHHHHHHHHHHcCCC
Q 015310           86 KRLEALHLAEDLG-ADYVDFELKVAS----NILGKQY-SSHQ---SGTRFI-VSCNLDCETPSEEDLGYLVSRMQATGAD  155 (409)
Q Consensus        86 ~~~~ll~~~~~~g-~dyvDiEl~~~~----~~~~~l~-~~~~---~~~kiI-~S~H~f~~tp~~~~l~~~~~~~~~~gaD  155 (409)
                      ++..+.+.+.+.| .++|-+|+--..    +...+++ .+++   .+..++ ++.|+      .+    ..+++.+.|+|
T Consensus        80 ~~~~f~~~a~~agg~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~------~~----~a~~~~~~gad  149 (264)
T 1xm3_A           80 EAVRIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDD------VV----LARKLEELGVH  149 (264)
T ss_dssp             HHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSC------HH----HHHHHHHHTCS
T ss_pred             HHHHHHHHHHHcCCCCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCC------HH----HHHHHHHhCCC
Confidence            6556777777765 778766653321    1112222 2222   366777 66553      22    35566678999


Q ss_pred             EE
Q 015310          156 II  157 (409)
Q Consensus       156 iv  157 (409)
                      ++
T Consensus       150 ~v  151 (264)
T 1xm3_A          150 AI  151 (264)
T ss_dssp             CB
T ss_pred             EE
Confidence            88

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=91.60  E-value=0.59  Score=46.76  Aligned_cols=52  Identities=17%  Similarity=0.151  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHh-CCCeE-EEEeC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGARV-VIFDI  399 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~-~G~~i-~v~nR  399 (409)
                      ++|.+.+++..+.+.+         .+++|++++|.|.|.+|+.++.-|.+ +|++| .|.++
T Consensus       189 g~Gv~~~~~~~~~~~g---------~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~  242 (415)
T 2tmg_A          189 GRGVKVCAGLAMDVLG---------IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDS  242 (415)
T ss_dssp             HHHHHHHHHHHHHHTT---------CCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             HHHHHHHHHHHHHHcC---------CCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeC
Confidence            4677778777765433         57889999999999999999999999 99964 48877

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=91.58  E-value=3.6  Score=38.31  Aligned_cols=126  Identities=21%  Similarity=0.162  Sum_probs=77.1

Q ss_pred             HHHHHHHhcCCCEEEEEecCCCCCCCh---hHHHHHH---hcCCCcEEEEeccCCCCCCCC--CCHHHHHHHHHHHHHcC
Q 015310           27 SNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIIL---TKKPLPVLIVYRPKWAGGLYE--GDEHKRLEALHLAEDLG   98 (409)
Q Consensus        27 ~~~~~~~~~~aD~vElRlD~l~~~~~~---~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~~~~g   98 (409)
                      .+++++.+.|+|.|-+|+.+=.. +..   +.+.+++   +...+|+|+....  .|....  .++++-.+..+.+.+.|
T Consensus        96 ~~ve~Ai~~Ga~~v~~~~nig~~-~~~~~~~~~~~v~~~~~~~~~~vIi~~~~--~G~~~~~~~s~~~i~~a~~~a~~~G  172 (263)
T 1w8s_A           96 CSVEEAVSLGASAVGYTIYPGSG-FEWKMFEELARIKRDAVKFDLPLVVESFP--RGGKVVNETAPEIVAYAARIALELG  172 (263)
T ss_dssp             SCHHHHHHTTCSEEEEEECTTST-THHHHHHHHHHHHHHHHHHTCCEEEEECC--CSTTCCCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCEEEEEEecCCc-CHHHHHHHHHHHHHHHHHcCCeEEEEeeC--CCCccccCCCHHHHHHHHHHHHHcC
Confidence            45667778899999999844322 222   2223333   2348899988654  344332  25565555568888999


Q ss_pred             CcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 015310           99 ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK  158 (409)
Q Consensus        99 ~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivK  158 (409)
                      +|||=+.+....+.++.+...- +.++|++|==.  +.-+.++..+.+....+.||+-+=
T Consensus       173 AD~vkt~~~~~~e~~~~~~~~~-~~~pV~asGGi--~~~~~~~~l~~i~~~~~aGA~Gvs  229 (263)
T 1w8s_A          173 ADAMKIKYTGDPKTFSWAVKVA-GKVPVLMSGGP--KTKTEEDFLKQVEGVLEAGALGIA  229 (263)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHT-TTSCEEEECCS--CCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEcCCCCHHHHHHHHHhC-CCCeEEEEeCC--CCCCHHHHHHHHHHHHHcCCeEEE
Confidence            9999999643334556565332 22255555211  111467888888888889998443

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=91.57  E-value=0.63  Score=41.77  Aligned_cols=94  Identities=16%  Similarity=0.155  Sum_probs=54.0

Q ss_pred             HHHHHHHhcCCCEEEEEecCCCCCCChh---HHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015310           27 SNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVD  103 (409)
Q Consensus        27 ~~~~~~~~~~aD~vElRlD~l~~~~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvD  103 (409)
                      ..++.+.+.|+|+|++|..-   .+..+   .+..+.+..+.++|+.-+                  .+.+.+.|++.|=
T Consensus        17 ~~~~~a~~~Gv~~v~lr~k~---~~~~~~~~~i~~l~~~~~~~livnd~------------------~~~A~~~gadgvh   75 (210)
T 3ceu_A           17 KIITALFEEGLDILHLRKPE---TPAMYSERLLTLIPEKYHRRIVTHEH------------------FYLKEEFNLMGIH   75 (210)
T ss_dssp             HHHHHHHHTTCCEEEECCSS---CCHHHHHHHHHHSCGGGGGGEEESSC------------------TTHHHHTTCSEEE
T ss_pred             HHHHHHHHCCCCEEEEccCC---CCHHHHHHHHHHHHHHhCCeEEEeCC------------------HHHHHHcCCCEEE
Confidence            55777788999999999432   22221   222222334677776311                  1456678899985


Q ss_pred             EeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310          104 FELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus       104 iEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      +--+..+     .  ....+..+..|.|+      .+|+    .++. .|||++++
T Consensus        76 l~~~~~~-----~--~~~~~~~ig~s~~t------~~e~----~~A~-~GaDyv~~  113 (210)
T 3ceu_A           76 LNARNPS-----E--PHDYAGHVSCSCHS------VEEV----KNRK-HFYDYVFM  113 (210)
T ss_dssp             CCSSSCS-----C--CTTCCSEEEEEECS------HHHH----HTTG-GGSSEEEE
T ss_pred             ECccccc-----c--ccccCCEEEEecCC------HHHH----HHHh-hCCCEEEE
Confidence            4222111     0  01135678889885      2343    3344 79999997

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=91.52  E-value=0.23  Score=49.21  Aligned_cols=40  Identities=28%  Similarity=0.360  Sum_probs=36.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|...|++|++++|+.++
T Consensus       112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~  151 (380)
T 2o4c_A          112 ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQA  151 (380)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred             cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhh
Confidence            4678999999999999999999999999999999987653

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=91.48  E-value=0.27  Score=47.06  Aligned_cols=125  Identities=14%  Similarity=0.187  Sum_probs=75.6

Q ss_pred             HHHHHhcCCCceEeecCc----ccHHHHHHHh-cCCCCCeEEEcccchH-----HHHhhhhhhcHH--HHHhccceEEEE
Q 015310          258 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKE-----AVMKFCDEVHPL--AQAIAAVNTIIR  325 (409)
Q Consensus       258 n~~f~~~gl~~~y~~~~~----~~l~~~~~~~-~~~~~~G~nVT~P~K~-----~i~~~~d~~~~~--A~~igAvNti~~  325 (409)
                      .+..+++|+......++.    +++.+.++.+ .++.+.|+-|-.|.-.     .++..++   +.  +.-....|.=..
T Consensus        75 ~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~---p~KDVDG~hp~N~G~L  151 (303)
T 4b4u_A           75 GNACRRVGMDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAIS---LAKDVDGVTCLGFGRM  151 (303)
T ss_dssp             HHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSC---GGGCTTCCCHHHHHHH
T ss_pred             HHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhccC---cccccCccCcchHHHh
Confidence            456789999987666653    3677777777 5788999999999732     2221111   10  000000110000


Q ss_pred             eCCCCeEEEEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeCC
Q 015310          326 RPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       326 ~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR~  400 (409)
                      .. +...+ .-.--.|++..|++.             +.+++||+++|+|.+. +||.++.-|.+.|+.|+++...
T Consensus       152 ~~-g~~~~-~PcTp~gv~~lL~~~-------------~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~  212 (303)
T 4b4u_A          152 AM-GEAAY-GSATPAGIMTILKEN-------------NIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSR  212 (303)
T ss_dssp             HT-TCCCC-CCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             cC-CCCcc-cCccHHHHHHHHHHH-------------CCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCC
Confidence            00 00000 001125777776543             3689999999999766 9999999999999999998643

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=91.44  E-value=0.18  Score=50.61  Aligned_cols=41  Identities=22%  Similarity=0.247  Sum_probs=35.9

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++|||.|+ ||.|.+++..+...|++++++.++.+|.+.+
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~  261 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAV  261 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            5789999998 9999999999999999888888988876654

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=91.42  E-value=0.099  Score=51.30  Aligned_cols=39  Identities=13%  Similarity=0.073  Sum_probs=34.9

Q ss_pred             CEEEEEechhHHHHHHHHHHhCC-------CeEEEEeCChH-----HHHhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRG-------ARVVIFDIDFE-----QSLLL  407 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G-------~~i~v~nR~~~-----ka~~l  407 (409)
                      .++.|||+|.+|.+++..|.+.|       .+|++++|+.+     +++.+
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l   72 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDII   72 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHH
Confidence            46999999999999999999999       79999999988     77655

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=91.38  E-value=0.16  Score=50.58  Aligned_cols=39  Identities=15%  Similarity=-0.037  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++|++++|+.+
T Consensus       187 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~  225 (393)
T 2nac_A          187 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL  225 (393)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            457899999999999999999999999999999999853

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=91.35  E-value=0.2  Score=47.94  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=34.5

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC--hHHHHhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID--FEQSLLL  407 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~--~~ka~~l  407 (409)
                      ..++.|||+|-+|.+++..|.+.|. +|+++||+  .++.+.+
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~   66 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRA   66 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHH
Confidence            4689999999999999999999999 99999997  4665543

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=91.34  E-value=5.3  Score=37.81  Aligned_cols=143  Identities=14%  Similarity=0.069  Sum_probs=87.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .+.+++.+-++++.+.+++.|=+.--+      .....+.++..++++. |+-.-+.|..   +-+.+..-.+.+++.|+
T Consensus        71 ~T~~dI~~lc~eA~~~g~aaVCV~P~~------V~~a~~~L~~s~V~V~-tVigFP~G~~---~~~~Kv~Ea~~Ai~~GA  140 (288)
T 3oa3_A           71 ATGSQIDVLCAEAKEYGFATVCVRPDY------VSRAVQYLQGTQVGVT-CVIGFHEGTY---STDQKVSEAKRAMQNGA  140 (288)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEECGGG------HHHHHHHTTTSSCEEE-EEESTTTSCS---CHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhcCCcEEEECHHH------HHHHHHHcCCCCCeEE-EEeCCCCCCC---cHHHHHHHHHHHHHcCC
Confidence            457888888888888888877332111      1223333333455544 5533233222   33556666678999999


Q ss_pred             cEEEEeccCcc-------c---hHHHHHhc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe----ecC
Q 015310          100 DYVDFELKVAS-------N---ILGKQYSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF----SVN  164 (409)
Q Consensus       100 dyvDiEl~~~~-------~---~~~~l~~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~----~~~  164 (409)
                      |-||+=++...       .   .++.+..+ +....|+|+---.    .+.+++....+-+.+.|||+||-.+    -..
T Consensus       141 dEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~----Lt~eei~~A~~ia~eaGADfVKTSTGf~~~GA  216 (288)
T 3oa3_A          141 SELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQ----LTADEIIAGCVLSSLAGADYVKTSTGFNGPGA  216 (288)
T ss_dssp             SEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGG----CCHHHHHHHHHHHHHTTCSEEECCCSSSSCCC
T ss_pred             CEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCC----CCHHHHHHHHHHHHHcCCCEEEcCCCCCCCCC
Confidence            99997555421       1   22333322 3334788886543    3467888888888899999999874    245


Q ss_pred             CHhHHHHHHHHh
Q 015310          165 DITEIARIFQLL  176 (409)
Q Consensus       165 ~~~D~~~ll~~~  176 (409)
                      +.+|+..+.+..
T Consensus       217 T~edv~lmr~~v  228 (288)
T 3oa3_A          217 SIENVSLMSAVC  228 (288)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            678886665554

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=91.32  E-value=0.23  Score=50.08  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=35.8

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      .++.|+|+|-+|.+++..|++ |.+|++++|++++++.+.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~   75 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLN   75 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHh
Confidence            489999999999999999998 999999999999988764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=91.29  E-value=0.26  Score=47.66  Aligned_cols=41  Identities=29%  Similarity=0.366  Sum_probs=36.0

Q ss_pred             CCCEEEEE-echhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLA-GAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvl-GaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|+++||+ |+|+.|.+++..+...|++|+++.++.++.+.+
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  191 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWT  191 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            57899999 689999999999999999999999988876543

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=91.22  E-value=0.2  Score=48.71  Aligned_cols=42  Identities=14%  Similarity=0.124  Sum_probs=37.0

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC--eEEEEeCChHHHHhhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~--~i~v~nR~~~ka~~la  408 (409)
                      ..+++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a   63 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEM   63 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHH
Confidence            45789999999999999999999996  8999999998877643

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=91.19  E-value=0.22  Score=50.32  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++|+|||+|-+|.++++.|.+.|.+|+|+.+.
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~   65 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS   65 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            568999999999999999999999999999775

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=91.17  E-value=0.22  Score=47.86  Aligned_cols=33  Identities=30%  Similarity=0.550  Sum_probs=31.5

Q ss_pred             CEEEEEechhHHHHHHHHHHhCC-CeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G-~~i~v~nR~~  401 (409)
                      .++.|||+|-+|.+++..|.+.| .+|+++||+.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            68999999999999999999999 7999999997

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=91.13  E-value=0.3  Score=46.90  Aligned_cols=40  Identities=33%  Similarity=0.374  Sum_probs=34.0

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+++|+|+||.+-.++..++.+|. +|+.++++++|.+.
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~  203 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNL  203 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHH
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhh
Confidence            57899999999999888888887765 99999999887653

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=91.09  E-value=0.22  Score=49.11  Aligned_cols=38  Identities=29%  Similarity=0.338  Sum_probs=35.3

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+.|+++.|+|-|.+|++++..|..+|++|+.++|+.
T Consensus       172 ~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~  209 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL  209 (365)
T ss_dssp             CCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS
T ss_pred             cccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCC
Confidence            46789999999999999999999999999999999974

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.00  E-value=0.2  Score=53.09  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=30.8

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ...|+|||+|.+|.++|+.|++.|.+|+|+.+.
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  304 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCAD  304 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            368999999999999999999999999999985

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=90.96  E-value=2.5  Score=39.74  Aligned_cols=141  Identities=10%  Similarity=0.065  Sum_probs=84.0

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (409)
                      +.+++++.+++..+.|||+|-+-...-...+..   ..++.+++..+.|+.+--              .+-+.++++++.
T Consensus        32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l~~~~~~pisIDT--------------~~~~v~~aal~a   97 (271)
T 2yci_X           32 DPRPIQEWARRQAEKGAHYLDVNTGPTADDPVRVMEWLVKTIQEVVDLPCCLDS--------------TNPDAIEAGLKV   97 (271)
T ss_dssp             CCHHHHHHHHHHHHTTCSEEEEECCSCSSCHHHHHHHHHHHHHHHCCCCEEEEC--------------SCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEcCCcCchhHHHHHHHHHHHHHHhCCCeEEEeC--------------CCHHHHHHHHHh
Confidence            467788888888899999999998873321111   122333344578865431              134677888888


Q ss_pred             --CCcEE-EEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCC-----HhHHHHHHHHHHHcCCCEEEEEe-----e-
Q 015310           98 --GADYV-DFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPS-----EEDLGYLVSRMQATGADIIKLVF-----S-  162 (409)
Q Consensus        98 --g~dyv-DiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~-----~~~l~~~~~~~~~~gaDivKia~-----~-  162 (409)
                        |+++| ||-...  +.+.++. ...+.+..+|+.+-+-.++|.     .+.+.++++.+.+.|-+-=+|..     . 
T Consensus        98 ~~Ga~iINdvs~~~--d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfi  175 (271)
T 2yci_X           98 HRGHAMINSTSADQ--WKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPV  175 (271)
T ss_dssp             CCSCCEEEEECSCH--HHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCT
T ss_pred             CCCCCEEEECCCCc--cccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCcc
Confidence              98876 576543  2112222 223457788888655467775     34466777778887753101222     2 


Q ss_pred             cCCHhHHHHHHHHhc
Q 015310          163 VNDITEIARIFQLLS  177 (409)
Q Consensus       163 ~~~~~D~~~ll~~~~  177 (409)
                      .++.+.++.+++.+.
T Consensus       176 gk~~~~~~~~l~~l~  190 (271)
T 2yci_X          176 NVAQEHAVEVLETIR  190 (271)
T ss_dssp             TTSTHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHH
Confidence            345666666665544

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=90.90  E-value=7.7  Score=36.57  Aligned_cols=144  Identities=12%  Similarity=0.184  Sum_probs=91.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCC----CChhHHHHH-------HhcCCCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNF----QPGKDLEII-------LTKKPLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~----~~~~~l~~l-------~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      +.+++++.+++..+.|||+|.+=...-.+.    +..+++.++       ++..+.|+-+-  |            .+-+
T Consensus        36 ~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piSID--T------------~~~~  101 (282)
T 1aj0_A           36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVD--T------------SKPE  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE--C------------CCHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEe--C------------CCHH
Confidence            368899999999999999998888654222    112334333       23346665432  1            2345


Q ss_pred             HHHHHHHcCCcEE-EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCC---------------HhHHHHHHHHHHHcC
Q 015310           90 ALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPS---------------EEDLGYLVSRMQATG  153 (409)
Q Consensus        90 ll~~~~~~g~dyv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~---------------~~~l~~~~~~~~~~g  153 (409)
                      ..+++++.|+++| ||-....++.++ +.  .+.+..+|+.+ . .++|.               .+.+.+.++++.+.|
T Consensus       102 va~aAl~aGa~iINdvsg~~d~~~~~-~~--a~~~~~vVlmh-~-~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~G  176 (282)
T 1aj0_A          102 VIRESAKVGAHIINDIRSLSEPGALE-AA--AETGLPVCLMH-M-QGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAG  176 (282)
T ss_dssp             HHHHHHHTTCCEEEETTTTCSTTHHH-HH--HHHTCCEEEEC-C-SSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEEEECCCCCCHHHHH-HH--HHhCCeEEEEc-c-CCCCccccccCccchHHHHHHHHHHHHHHHHHHcC
Confidence            7888999999887 665434444443 22  23567788774 3 55664               556788888899988


Q ss_pred             CCEEEEEe-----ecCCHhHHHHHHHHhccC---CCCE
Q 015310          154 ADIIKLVF-----SVNDITEIARIFQLLSHC---QVPI  183 (409)
Q Consensus       154 aDivKia~-----~~~~~~D~~~ll~~~~~~---~~p~  183 (409)
                      -+-=+|..     ..++.++++.+++-+.+.   +.|+
T Consensus       177 i~~~~IilDPg~gf~k~~~~n~~ll~~l~~~~~~g~P~  214 (282)
T 1aj0_A          177 IAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPL  214 (282)
T ss_dssp             CCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB
T ss_pred             CChhhEEEeCCCCcccCHHHHHHHHHHHHHHhcCCCCE
Confidence            54113443     456888998888876543   5554

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=90.85  E-value=6  Score=36.39  Aligned_cols=142  Identities=15%  Similarity=0.105  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .+.+++.+-++++.+.+++.|=+.--+      .....+.++..+.++- |+=.-+.|-.   +.+.+..-.+.|++.|+
T Consensus        40 ~t~~~i~~lc~eA~~~~~~aVcV~p~~------v~~a~~~L~~s~v~v~-tVigFP~G~~---~~~~Kv~Ea~~Ai~~GA  109 (239)
T 3ngj_A           40 ATEEQIRKLCSEAAEYKFASVCVNPTW------VPLCAELLKGTGVKVC-TVIGFPLGAT---PSEVKAYETKVAVEQGA  109 (239)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEECGGG------HHHHHHHHTTSSCEEE-EEESTTTCCS---CHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHhcCCcEEEECHHH------HHHHHHHhCCCCCeEE-EEeccCCCCC---chHHHHHHHHHHHHcCC
Confidence            457888888888888888777332111      1233344443454444 4322222222   33556666678999999


Q ss_pred             cEEEEeccCcc-------ch---HHHHHhc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe----ecC
Q 015310          100 DYVDFELKVAS-------NI---LGKQYSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF----SVN  164 (409)
Q Consensus       100 dyvDiEl~~~~-------~~---~~~l~~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~----~~~  164 (409)
                      |-||+=++...       ..   ++.+..+ +..-.|+|+---.    .+.+++....+-+.+.|||++|-.+    -..
T Consensus       110 dEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~----Lt~eei~~a~~ia~~aGADfVKTSTGf~~ggA  185 (239)
T 3ngj_A          110 EEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCY----LTNEEKVEVCKRCVAAGAEYVKTSTGFGTHGA  185 (239)
T ss_dssp             SEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGG----SCHHHHHHHHHHHHHHTCSEEECCCSSSSCCC
T ss_pred             CEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCC----CCHHHHHHHHHHHHHHCcCEEECCCCCCCCCC
Confidence            99998766532       12   2333322 2234788886543    3567788888888899999999883    235


Q ss_pred             CHhHHHHHHHH
Q 015310          165 DITEIARIFQL  175 (409)
Q Consensus       165 ~~~D~~~ll~~  175 (409)
                      +.+|+..+.+.
T Consensus       186 t~~dv~lmr~~  196 (239)
T 3ngj_A          186 TPEDVKLMKDT  196 (239)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHh
Confidence            77888666554

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=90.76  E-value=0.23  Score=50.10  Aligned_cols=41  Identities=22%  Similarity=0.218  Sum_probs=35.8

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++|+|+|+ ||.|.+++..+...|++++++.++.+|.+.+
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~  269 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC  269 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            5789999998 9999999999999999888888888887654

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.74  E-value=0.21  Score=53.15  Aligned_cols=33  Identities=24%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ...|+|||+|.+|.++|+.|++.|.+|+|+.+.
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~  296 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCAD  296 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence            357999999999999999999999999999985

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=90.73  E-value=7.1  Score=40.27  Aligned_cols=205  Identities=14%  Similarity=0.074  Sum_probs=117.1

Q ss_pred             HHHHHHHHHhcCCCEEEEE----ecC---CCCCCChhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 015310           25 VLSNMYQAKAEGADVVEIR----LDC---INNFQPGKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (409)
Q Consensus        25 ~~~~~~~~~~~~aD~vElR----lD~---l~~~~~~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (409)
                      .++-++.+.+.|.|.||.=    .|.   +-..++.+.+..+++. .+.++..-+|..+-=|....+++-..+.++.+.+
T Consensus        49 Kl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl~~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~~ve~a~~  128 (539)
T 1rqb_A           49 MVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAE  128 (539)
T ss_dssp             TGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEeCcccccccchhccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHHHHHHHHh
Confidence            3333455556799999986    232   1122445566666653 3566666668665556555556556677889999


Q ss_pred             cCCcEEEEeccCcc-chHHHHH-hccCCCcEE--EEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHhHHH
Q 015310           97 LGADYVDFELKVAS-NILGKQY-SSHQSGTRF--IVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DITEIA  170 (409)
Q Consensus        97 ~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~ki--I~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~~D~~  170 (409)
                      .|++.|-|=....+ +.+...+ .+++.+.++  -+|+=+...+ +.+.+.++++++.+.|||++-|+=|.-  ++.++.
T Consensus       129 aGvd~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~-~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~  207 (539)
T 1rqb_A          129 NGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVH-TVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAY  207 (539)
T ss_dssp             TTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTC-CHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHH
T ss_pred             CCCCEEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeCCCC-CHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHH
Confidence            99999887544332 1222222 345566666  4555433222 457899999999999999998875543  577777


Q ss_pred             HHHHHhcc-C--CCCEEEEE---cCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          171 RIFQLLSH-C--QVPIIAYS---VGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       171 ~ll~~~~~-~--~~p~i~~~---MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      ++.+.+.+ .  +.|+ .+-   ..-++...=+..-..|....=+++.. +--.||.+++++...++.
T Consensus       208 ~lv~~l~~~~p~~i~I-~~H~Hnd~GlAvAN~laAveAGa~~VD~ti~g~GertGN~~lE~lv~~L~~  274 (539)
T 1rqb_A          208 DIIKAIKDTYGQKTQI-NLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSLGPGHNPTESVAEMLEG  274 (539)
T ss_dssp             HHHHHHHHHHCTTCCE-EEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSBCBHHHHHHHTTT
T ss_pred             HHHHHHHHhcCCCceE-EEEeCCCCChHHHHHHHHHHhCCCEEEEeccccCCCccChhHHHHHHHHHh
Confidence            77766543 2  3443 331   22233333333333333322222221 112677777776666553

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=90.56  E-value=0.3  Score=47.04  Aligned_cols=41  Identities=29%  Similarity=0.385  Sum_probs=34.9

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCC-CeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G-~~i~v~nR~~~ka~~l  407 (409)
                      .|.+++|+|+|++|.+++..+...| .+|++++++.+|.+.+
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~  212 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALA  212 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence            4789999999999999988888885 5999999998886643

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=90.53  E-value=0.22  Score=48.08  Aligned_cols=43  Identities=16%  Similarity=0.163  Sum_probs=35.6

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhC-CCeEEEEeCChHHHHhh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSR-GARVVIFDIDFEQSLLL  407 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~-G~~i~v~nR~~~ka~~l  407 (409)
                      ...+++|||.|+ |..|++++..|.+. |.+|++++|+.++...+
T Consensus        21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~   65 (372)
T 3slg_A           21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL   65 (372)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh
Confidence            356789999995 88999999999998 88999999987766543

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=90.50  E-value=0.23  Score=53.41  Aligned_cols=38  Identities=13%  Similarity=0.149  Sum_probs=35.3

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ++|.|||+|-+|.+++..|++.|.+|++++|++++++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~  350 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEA  350 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            57999999999999999999999999999999887764

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=90.48  E-value=0.25  Score=48.90  Aligned_cols=40  Identities=23%  Similarity=0.312  Sum_probs=36.1

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|.+|++++..|..+|++|.+++|..+.
T Consensus       115 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~  154 (381)
T 3oet_A          115 FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAA  154 (381)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred             CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHH
Confidence            5688999999999999999999999999999999986543

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=90.47  E-value=0.26  Score=50.28  Aligned_cols=34  Identities=29%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+|+|||+|.+|.+++..|++.|.+|+|+.+..
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~  125 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRI  125 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEecc
Confidence            5689999999999999999999999999998863

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=90.43  E-value=1.9  Score=40.54  Aligned_cols=111  Identities=19%  Similarity=0.258  Sum_probs=67.2

Q ss_pred             HHHHHHHHhcCCCEEEEEecC--CCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEE
Q 015310           26 LSNMYQAKAEGADVVEIRLDC--INNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVD  103 (409)
Q Consensus        26 ~~~~~~~~~~~aD~vElRlD~--l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvD  103 (409)
                      ...++.+...||+++.+--|-  |..  ..+.+..+++..++|+|.-     +   |-.++.+    ++.+...|+|.|=
T Consensus        75 ~~~A~~y~~~GA~~isvltd~~~f~G--s~~~l~~ir~~v~lPvl~k-----d---fiid~~q----v~~A~~~GAD~Vl  140 (272)
T 3qja_A           75 AKLAQAYQDGGARIVSVVTEQRRFQG--SLDDLDAVRASVSIPVLRK-----D---FVVQPYQ----IHEARAHGADMLL  140 (272)
T ss_dssp             HHHHHHHHHTTCSEEEEECCGGGHHH--HHHHHHHHHHHCSSCEEEE-----S---CCCSHHH----HHHHHHTTCSEEE
T ss_pred             HHHHHHHHHcCCCEEEEecChhhcCC--CHHHHHHHHHhCCCCEEEC-----c---cccCHHH----HHHHHHcCCCEEE
Confidence            334555566899999865431  111  1245677777789999931     2   2234321    3455678999987


Q ss_pred             Ee-ccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310          104 FE-LKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus       104 iE-l~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      += -..+.+.+++++ ..+.-|..++++.|+      .+|+    +++.+.|+|++.+-
T Consensus       141 Li~a~l~~~~l~~l~~~a~~lGl~~lvev~t------~ee~----~~A~~~Gad~IGv~  189 (272)
T 3qja_A          141 LIVAALEQSVLVSMLDRTESLGMTALVEVHT------EQEA----DRALKAGAKVIGVN  189 (272)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHTTCEEEEEESS------HHHH----HHHHHHTCSEEEEE
T ss_pred             EecccCCHHHHHHHHHHHHHCCCcEEEEcCC------HHHH----HHHHHCCCCEEEEC
Confidence            72 222233344554 345678899999986      3444    34446799999875

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=90.39  E-value=0.24  Score=48.22  Aligned_cols=39  Identities=23%  Similarity=0.238  Sum_probs=34.1

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      +.+++++||.|+ |+.|++++..|.+.|++|++++|+.++
T Consensus        26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   65 (379)
T 2c5a_A           26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNE   65 (379)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCS
T ss_pred             cccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            345689999997 889999999999999999999998654

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=90.38  E-value=7.3  Score=37.06  Aligned_cols=86  Identities=9%  Similarity=0.056  Sum_probs=60.5

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCC------C-----CC----hhHHHHHHhcCCCcEEEEeccCCC
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINN------F-----QP----GKDLEIILTKKPLPVLIVYRPKWA   76 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~------~-----~~----~~~l~~l~~~~~~PiI~T~R~~~e   76 (409)
                      .+.+.|.+.+.+++.+.++.+.+. +|.||+-+.+=..      .     +.    .+.++.+++..+.|+.+-+|.   
T Consensus        60 ~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~---  135 (318)
T 1vhn_A           60 NVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRL---  135 (318)
T ss_dssp             TEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEES---
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecC---
Confidence            467899999999999999988777 9999998874221      0     01    123344555567898888886   


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           77 GGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                       |.- ..+  -.++.+.+.+.|+|+|.|-
T Consensus       136 -G~~-~~~--~~~~a~~l~~~G~d~i~v~  160 (318)
T 1vhn_A          136 -GWE-KNE--VEEIYRILVEEGVDEVFIH  160 (318)
T ss_dssp             -CSS-SCC--HHHHHHHHHHTTCCEEEEE
T ss_pred             -CCC-hHH--HHHHHHHHHHhCCCEEEEc
Confidence             321 221  2277888889999999984

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=90.36  E-value=0.32  Score=46.97  Aligned_cols=39  Identities=28%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|+++||+| +||.|.+++..+...|++|+++ ++.++.+.
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~  189 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEY  189 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHH
Confidence            578999999 6999999999999999998888 77777554

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=90.29  E-value=0.21  Score=49.95  Aligned_cols=34  Identities=38%  Similarity=0.519  Sum_probs=31.2

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ..|+|||+|.+|.++|+.|++.|.+|+|+.|...
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~   61 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARA   61 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4699999999999999999999999999998753

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=90.29  E-value=9.2  Score=35.70  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=54.5

Q ss_pred             CCeeEEEeec--cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHHhc-CC
Q 015310            9 NTTMICAPLM--AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTK-KP   64 (409)
Q Consensus         9 ~~~~icv~l~--~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~~~-~~   64 (409)
                      +++.++.-|+  .++.+...+.++.+.+.|+|++|+=+-+-++..+.                     +.++++++. .+
T Consensus        16 ~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~   95 (267)
T 3vnd_A           16 DKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPD   95 (267)
T ss_dssp             TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence            4455555554  46669998888888889999999998875544321                     233444544 68


Q ss_pred             CcEEEEeccCCCCCCCCCCHHH--HHHHHHHHHHcCCcEEEE
Q 015310           65 LPVLIVYRPKWAGGLYEGDEHK--RLEALHLAEDLGADYVDF  104 (409)
Q Consensus        65 ~PiI~T~R~~~eGG~~~~~~~~--~~~ll~~~~~~g~dyvDi  104 (409)
                      +|+++-.-.       +. -..  ..++++.+.+.|+|.+=+
T Consensus        96 ~Pivlm~Y~-------np-v~~~g~e~f~~~~~~aGvdgvii  129 (267)
T 3vnd_A           96 MPIGLLLYA-------NL-VFANGIDEFYTKAQAAGVDSVLI  129 (267)
T ss_dssp             CCEEEEECH-------HH-HHHHCHHHHHHHHHHHTCCEEEE
T ss_pred             CCEEEEecC-------cH-HHHhhHHHHHHHHHHcCCCEEEe
Confidence            897764211       00 011  144667777888877554

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=90.27  E-value=0.25  Score=53.06  Aligned_cols=39  Identities=23%  Similarity=0.333  Sum_probs=35.8

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      -++|.|||+|-+|.+++..|++.|.+|++++|++++++.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~  352 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQ  352 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHH
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            367999999999999999999999999999999987764

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=90.04  E-value=0.78  Score=45.98  Aligned_cols=52  Identities=29%  Similarity=0.313  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCC-CCCCEEEEEechhHHHHHHHHHHh-CCCeEEEEeC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSP-LAGRMFVLAGAGGAGRALAFGAKS-RGARVVIFDI  399 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~vlvlGaGGaarai~~aL~~-~G~~i~v~nR  399 (409)
                      ++|.+.+++..+.+.         +.+ ++|+++.|+|.|.+|+.++.-|.. +|++|.-+++
T Consensus       191 g~Gv~~~~~~~~~~~---------G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD  244 (419)
T 1gtm_A          191 ARGASYTIREAAKVL---------GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSD  244 (419)
T ss_dssp             HHHHHHHHHHHHHHT---------TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hhHHHHHHHHHHHHh---------CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeC
Confidence            467777777766532         256 889999999999999999999999 9998776654

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=89.97  E-value=0.16  Score=52.62  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=31.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      ++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        31 ~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D   65 (531)
T 1tt5_A           31 ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   65 (531)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCC
T ss_pred             hcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45789999999999999999999999 99999876

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=89.93  E-value=0.36  Score=48.48  Aligned_cols=53  Identities=17%  Similarity=0.261  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEeCC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID  400 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~nR~  400 (409)
                      ++|.+..++..+.+.+         .+++|++++|.|.|.+|+.++.-|.++|++|+ |.+.+
T Consensus       192 g~Gv~~~~~~~~~~~g---------~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~  245 (421)
T 2yfq_A          192 GFGVAVVVRESAKRFG---------IKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWD  245 (421)
T ss_dssp             HHHHHHHHHHHHHHTT---------CCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCC
T ss_pred             HHHHHHHHHHHHHhcC---------CCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecC
Confidence            4677777777665332         56889999999999999999999999999654 88887

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=89.91  E-value=0.32  Score=46.30  Aligned_cols=39  Identities=23%  Similarity=0.162  Sum_probs=31.8

Q ss_pred             CCCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ..++++++||.|+ |+.|++++..|.+.|.+|++++|+.+
T Consensus        17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   56 (333)
T 2q1w_A           17 RGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFAT   56 (333)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred             ecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCc
Confidence            3467889999995 88999999999999999999999753

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=89.36  E-value=0.061  Score=48.37  Aligned_cols=38  Identities=18%  Similarity=0.204  Sum_probs=33.7

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..++++.|||+|.+|++++..|.+.|.+|++++|+.++
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~   54 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQV   54 (201)
Confidence            45678999999999999999999999999999998653

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=89.83  E-value=0.27  Score=46.97  Aligned_cols=36  Identities=17%  Similarity=0.141  Sum_probs=32.0

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..++++||.|+ |..|++++..|.+.|.+|+++.|+.
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   59 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFS   59 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            35789999996 8899999999999999999999954

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=89.69  E-value=0.28  Score=45.96  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=30.2

Q ss_pred             CEEEEEechhHHHHHHHHHHhC-CCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~-G~~i~v~nR~~  401 (409)
                      ..++|+|+|.+|.++|+.|++. |.+|+|+.+..
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~   73 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   73 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4799999999999999999997 99999999864

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=89.68  E-value=0.34  Score=47.83  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      +.++|+|||||-+|.++++.|.+.|.+|+|+.++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            4578999999999999999999999999999876

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=89.67  E-value=0.34  Score=46.18  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=31.2

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++++||.|+ |+.|++++..|.+.|.+|++++|+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFF   61 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            46789999997 8899999999999999999999864

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=89.65  E-value=5.4  Score=37.60  Aligned_cols=173  Identities=16%  Similarity=0.210  Sum_probs=96.5

Q ss_pred             CCCCCeeEEEeecc-----------CCHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCChhHHHHHH---h---cCC
Q 015310            6 ITKNTTMICAPLMA-----------QSVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLEIIL---T---KKP   64 (409)
Q Consensus         6 ~~~~~~~icv~l~~-----------~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~~~~~~l~~l~---~---~~~   64 (409)
                      |.+.+|+|.--|.-           .+.+++++.+++..+.|||+|.+=...-..    .+..+++.++.   +   ..+
T Consensus         1 ~~~~~~~imgilN~TpDSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~   80 (280)
T 1eye_A            1 MSPAPVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQG   80 (280)
T ss_dssp             ----CCEEEEEEECSCCTTCSSCCCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEEEeCCCCCcCCCcccCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCC
Confidence            34556666655543           257889999999999999999888754321    12223344332   1   125


Q ss_pred             CcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE-EEeccC-ccchHHHHHhccCCCcEEEEeccCCCCCCC----
Q 015310           65 LPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV-DFELKV-ASNILGKQYSSHQSGTRFIVSCNLDCETPS----  138 (409)
Q Consensus        65 ~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv-DiEl~~-~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~----  138 (409)
                      .||-+-              ..+-+..+++++.|+++| ||--.. .++.++ +.  .+.+..+|+.+-  .++|.    
T Consensus        81 ~piSID--------------T~~~~va~aAl~aGa~iINdvsg~~~d~~m~~-~~--a~~~~~vVlmh~--~G~p~tm~~  141 (280)
T 1eye_A           81 ITVSID--------------TMRADVARAALQNGAQMVNDVSGGRADPAMGP-LL--AEADVPWVLMHW--RAVSADTPH  141 (280)
T ss_dssp             CCEEEE--------------CSCHHHHHHHHHTTCCEEEETTTTSSCTTHHH-HH--HHHTCCEEEECC--CCSCTTCTT
T ss_pred             CEEEEe--------------CCCHHHHHHHHHcCCCEEEECCCCCCCHHHHH-HH--HHhCCeEEEEcC--CCCCcchhh
Confidence            665332              133467889999999887 664333 333333 22  235677777743  34442    


Q ss_pred             ------------HhHHHHHHHHHHHcCCCEEEEEe-----ecCCHhHHHHHHHHhcc---CCCCEEEEEcCccchhhhhh
Q 015310          139 ------------EEDLGYLVSRMQATGADIIKLVF-----SVNDITEIARIFQLLSH---CQVPIIAYSVGERGLVSQLL  198 (409)
Q Consensus       139 ------------~~~l~~~~~~~~~~gaDivKia~-----~~~~~~D~~~ll~~~~~---~~~p~i~~~MG~~G~~SRi~  198 (409)
                                  .+.+.+.++.+.+.|-+-=+|..     ..++.++++.+++-+.+   .+.|+. ++.+...-+..++
T Consensus       142 ~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~Gf~k~~~~n~~ll~~l~~~~~~g~Pvl-~G~Srksfi~~~~  220 (280)
T 1eye_A          142 VPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVL-VGASRKRFLGALL  220 (280)
T ss_dssp             SCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBE-ECCTTCHHHHHHT
T ss_pred             cCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCCCcccCHHHHHHHHHHHHHhhcCCCCEE-EEecchHHHHhhh
Confidence                        34567788888888854113443     55678888888877643   356643 3444433343333

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=89.60  E-value=0.23  Score=48.35  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             CCEEEEEechhHHHHHHHHHHh-CC-CeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKS-RG-ARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~-~G-~~i~v~nR~~  401 (409)
                      ...|+|||+|-+|.++|+.|++ .| .+|+|+.+..
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            3579999999999999999999 99 7999999863

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=89.59  E-value=9  Score=35.69  Aligned_cols=143  Identities=13%  Similarity=0.046  Sum_probs=87.3

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015310           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (409)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (409)
                      ..+.+++.+-++++.+.+++.|=+.--+      .....+.++..+.++- |+=.-+.|..   +.+.+..=.+.|++.|
T Consensus        55 ~~t~~~I~~lc~eA~~~~~aaVCV~p~~------V~~a~~~L~gs~v~v~-tVigFP~G~~---~~~~Kv~Ea~~Ai~~G  124 (260)
T 3r12_A           55 FATPDDIKKLCLEARENRFHGVCVNPCY------VKLAREELEGTDVKVV-TVVGFPLGAN---ETRTKAHEAIFAVESG  124 (260)
T ss_dssp             TCCHHHHHHHHHHHHHTTCSEEEECGGG------HHHHHHHHTTSCCEEE-EEESTTTCCS---CHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHhcCCcEEEECHHH------HHHHHHHhcCCCCeEE-EEecCCCCCC---cHHHHHHHHHHHHHcC
Confidence            3467888888888888888777332111      1233344444454444 4323333332   3355555567899999


Q ss_pred             CcEEEEeccCcc----------chHHHHHhc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe----ec
Q 015310           99 ADYVDFELKVAS----------NILGKQYSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF----SV  163 (409)
Q Consensus        99 ~dyvDiEl~~~~----------~~~~~l~~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~----~~  163 (409)
                      +|-||+=++...          +.++.+..+ +..-.|+|+---.    .+.+++....+-+.+.|||++|-.+    -.
T Consensus       125 AdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~----Lt~eei~~A~~ia~eaGADfVKTSTGf~~~G  200 (260)
T 3r12_A          125 ADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCY----LDTEEKIAACVISKLAGAHFVKTSTGFGTGG  200 (260)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGG----CCHHHHHHHHHHHHHTTCSEEECCCSSSSCC
T ss_pred             CCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCC----CCHHHHHHHHHHHHHhCcCEEEcCCCCCCCC
Confidence            999998666531          122333322 2234688876542    2457888888888899999999875    24


Q ss_pred             CCHhHHHHHHHH
Q 015310          164 NDITEIARIFQL  175 (409)
Q Consensus       164 ~~~~D~~~ll~~  175 (409)
                      .+.+|+..+.+.
T Consensus       201 AT~edV~lm~~~  212 (260)
T 3r12_A          201 ATAEDVHLMKWI  212 (260)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            578888666554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=89.59  E-value=0.29  Score=47.53  Aligned_cols=39  Identities=23%  Similarity=0.249  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCC-CeEEEEeCChHH
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRG-ARVVIFDIDFEQ  403 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G-~~i~v~nR~~~k  403 (409)
                      .++++++||.|+ |+.|++++..|.+.| .+|++++|+.++
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   69 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSA   69 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCC
Confidence            356789999996 889999999999999 899999998654

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=89.57  E-value=0.18  Score=50.63  Aligned_cols=64  Identities=20%  Similarity=0.142  Sum_probs=43.3

Q ss_pred             EEEEcCcHHHHHHHHHHHH---HhcCcCCCCCCCCCCCCCCEEEEEec-hhHHHHHHHHHHh-CCCeEEEEeCChHH
Q 015310          332 LIGYNTDCEASITAIEDAI---KERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKS-RGARVVIFDIDFEQ  403 (409)
Q Consensus       332 l~G~NTD~~G~~~~l~~~l---~~~~~~~~~~~~~~~~~~~~vlvlGa-GGaarai~~aL~~-~G~~i~v~nR~~~k  403 (409)
                      ++..++.-.|....+++..   .+.+        .....+|++||.|+ +|.|+|++.+|++ .|++|.+++|+.++
T Consensus        30 ~~~~~a~p~g~~~~v~~qi~y~~~~~--------~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~   98 (422)
T 3s8m_A           30 FICTTTHPLGCERNVLEQIAATRARG--------VRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPG   98 (422)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHHHHTC--------CCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_pred             eeeecCCchhHHHHHHHHHHHHhhcc--------ccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchh
Confidence            4555666666666654332   1111        01124789999986 6899999999999 99999999987554

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=89.56  E-value=0.27  Score=46.78  Aligned_cols=39  Identities=18%  Similarity=0.165  Sum_probs=32.9

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|+++||+|+|+.|.+++..+...|++|+.+. +.+|.+.
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~  180 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQAL  180 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHH
Confidence            57899999999999999998899999888887 6555443

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=89.56  E-value=0.25  Score=47.48  Aligned_cols=38  Identities=21%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCC-CeEEEEeCChHH
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRG-ARVVIFDIDFEQ  403 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G-~~i~v~nR~~~k  403 (409)
                      ++++++||.|+ |+.|++++..|.+.| .+|+++.|+.++
T Consensus        44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~   83 (357)
T 2x6t_A           44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDG   83 (357)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSG
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCc
Confidence            45688999997 889999999999999 699999997544

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=89.53  E-value=0.72  Score=46.24  Aligned_cols=53  Identities=30%  Similarity=0.448  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeCC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDID  400 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR~  400 (409)
                      ++|....++..+...         +.+++|++|+|-|.|.+|..++.-|.++|++ |.|.+.+
T Consensus       201 g~Gv~~~~~~~~~~~---------g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~  254 (424)
T 3k92_A          201 AQGVTICIEEAVKKK---------GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDAN  254 (424)
T ss_dssp             HHHHHHHHHHHHHHT---------TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred             HHHHHHHHHHHHHHc---------CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            467777777766532         2568899999999999999999999999996 5788876

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=89.50  E-value=0.33  Score=50.80  Aligned_cols=34  Identities=21%  Similarity=0.369  Sum_probs=31.5

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ....|+|+|+|.+|.++|+.|++.|.+|+|+.|.
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~   55 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERS   55 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCC
Confidence            3568999999999999999999999999999986

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=89.50  E-value=0.32  Score=47.18  Aligned_cols=39  Identities=13%  Similarity=0.078  Sum_probs=32.8

Q ss_pred             CCEEEEEechhHHHHH-HHHH-HhCCCe-EEEEeCChH---HHHh
Q 015310          368 GRMFVLAGAGGAGRAL-AFGA-KSRGAR-VVIFDIDFE---QSLL  406 (409)
Q Consensus       368 ~~~vlvlGaGGaarai-~~aL-~~~G~~-i~v~nR~~~---ka~~  406 (409)
                      +++|+|+|+|++|.++ +..+ ..+|++ |+.+.++.+   |.+.
T Consensus       173 ~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~  217 (357)
T 2b5w_A          173 PSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDI  217 (357)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHH
Confidence            3899999999999999 8777 778995 999999877   6543

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=89.48  E-value=0.19  Score=54.50  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=31.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      ++.+|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus       410 ~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d  444 (805)
T 2nvu_B          410 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD  444 (805)
T ss_dssp             HTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCC
Confidence            46789999999999999999999999 99999876

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=89.42  E-value=0.33  Score=46.20  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=34.2

Q ss_pred             CCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       368 ~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      |+ +||.|+ |++|.+++..++..|++|+.+.++.+|.+.+
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~  187 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYL  187 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            45 999998 9999999999999999999999988876654

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=89.41  E-value=0.38  Score=46.06  Aligned_cols=36  Identities=19%  Similarity=0.168  Sum_probs=32.5

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ++++++||.|+ |+.|++++..|.+.|.+|++++|+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   61 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   61 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            45789999997 8899999999999999999999964

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=89.29  E-value=0.29  Score=47.41  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=31.5

Q ss_pred             CEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       369 ~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      +++||.|+ |+.|++++..|.+.|.+|++++|+.++
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~   64 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSN   64 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCcc
Confidence            68999997 889999999999999999999997653

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=89.25  E-value=8.9  Score=36.00  Aligned_cols=150  Identities=14%  Similarity=0.145  Sum_probs=87.5

Q ss_pred             HHHhcCCCEEEEEecCCC----CCCC-----hh----HHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310           31 QAKAEGADVVEIRLDCIN----NFQP-----GK----DLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (409)
Q Consensus        31 ~~~~~~aD~vElRlD~l~----~~~~-----~~----~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (409)
                      .+.+.|+|++ +-=|.+.    ..++     .+    ..+.+.+..+.|+|+ .-  -+-|.+..+.++-++--.+.++.
T Consensus        32 l~e~aG~d~i-lvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vv-aD--~pfgsy~~s~~~a~~na~rl~ka  107 (275)
T 1o66_A           32 LMDDAGVEML-LVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIV-SD--LPFGAYQQSKEQAFAAAAELMAA  107 (275)
T ss_dssp             HHHHTTCCEE-EECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEE-EE--CCTTSSSSCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCEE-EECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEE-EE--CCCCCccCCHHHHHHHHHHHHHc
Confidence            3345799999 6555432    1111     11    223444556777776 22  23345566777766666777888


Q ss_pred             CCcEEEEeccCccchHHHHHhccCCCcEEEE-------eccC---C---CCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310           98 GADYVDFELKVASNILGKQYSSHQSGTRFIV-------SCNL---D---CETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus        98 g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~-------S~H~---f---~~tp~~~~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                      |++.|=||-..  +....+..+...++.++.       |.|.   |   -+|-..+++++....+++.|||.+=+=..| 
T Consensus       108 Ga~aVklEdg~--e~~~~I~al~~agIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~vp-  184 (275)
T 1o66_A          108 GAHMVKLEGGV--WMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECVL-  184 (275)
T ss_dssp             TCSEEEEECSG--GGHHHHHHHHHTTCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEEESCC-
T ss_pred             CCcEEEECCcH--HHHHHHHHHHHcCCCeEeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHHHcCCcEEEEecCC-
Confidence            99999999763  223333322334555542       1121   1   233234778888888999999988776654 


Q ss_pred             CHhHHHHHHHHhccCCCCEEEEEcCcc
Q 015310          165 DITEIARIFQLLSHCQVPIIAYSVGER  191 (409)
Q Consensus       165 ~~~D~~~ll~~~~~~~~p~i~~~MG~~  191 (409)
                        +++.+  +++...++|+|.|+-|+.
T Consensus       185 --~~~a~--~it~~l~iP~igIGaG~~  207 (275)
T 1o66_A          185 --AELAK--KVTETVSCPTIGIGAGAD  207 (275)
T ss_dssp             --HHHHH--HHHHHCSSCEEEESSCSC
T ss_pred             --HHHHH--HHHHhCCCCEEEECCCCC
Confidence              23332  445556799999987764

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=89.15  E-value=5.7  Score=36.08  Aligned_cols=158  Identities=8%  Similarity=-0.009  Sum_probs=92.3

Q ss_pred             CCCCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHH
Q 015310            6 ITKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEH   85 (409)
Q Consensus         6 ~~~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~   85 (409)
                      |.. ++++|+.+-.++.++.++.+++. ...+|++++=..+|....+ +.++.+++..+.++++=+...      +.. +
T Consensus         9 m~~-~~~lilAlD~~~~~~a~~~v~~~-~~~v~~~Kvg~~lf~~~G~-~~v~~l~~~~g~~v~lD~Kl~------Dip-n   78 (228)
T 3m47_A            9 MDV-MNRLILAMDLMNRDDALRVTGEV-REYIDTVKIGYPLVLSEGM-DIIAEFRKRFGCRIIADFKVA------DIP-E   78 (228)
T ss_dssp             CCC-GGGEEEECCCCSHHHHHHHHHTT-TTTCSEEEEEHHHHHHHCT-HHHHHHHHHHCCEEEEEEEEC------SCH-H
T ss_pred             hhc-CCCeEEEeCCCCHHHHHHHHHHc-CCcccEEEEcHHHHHhcCH-HHHHHHHhcCCCeEEEEEeec------ccH-h
Confidence            444 78899999999999999888764 3338999998888754333 345666543467888777653      122 1


Q ss_pred             HHHHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEE--eccCCCCCCCHhH-HHHHHHHHHHcCCCEEEEEe
Q 015310           86 KRLEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIV--SCNLDCETPSEED-LGYLVSRMQATGADIIKLVF  161 (409)
Q Consensus        86 ~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~--S~H~f~~tp~~~~-l~~~~~~~~~~gaDivKia~  161 (409)
                      --....+.+.+.|+|+|-+=.....+.++..+ ..++.+.++++  |.-+-.......+ .....+...+.|.|-  +++
T Consensus        79 Tv~~~~~~~~~~gad~vtvh~~~G~~~l~~~~~~~~~~g~~v~vLt~~s~~~~~~~~~~~~~~~a~~a~~~G~~G--vV~  156 (228)
T 3m47_A           79 TNEKICRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKN--YVG  156 (228)
T ss_dssp             HHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECCCCSGGGGTTHHHHHHHHHHHHHHTTCCE--EEC
T ss_pred             HHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHHHHHHHHHHHHHHHhCCcE--EEE
Confidence            21223456678899999997666555454444 22223445543  3221110001112 234445566788775  456


Q ss_pred             ecCCHhHHHHHHHH
Q 015310          162 SVNDITEIARIFQL  175 (409)
Q Consensus       162 ~~~~~~D~~~ll~~  175 (409)
                      .+..++++..+-+.
T Consensus       157 ~at~~~e~~~ir~~  170 (228)
T 3m47_A          157 PSTRPERLSRLREI  170 (228)
T ss_dssp             CSSCHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHh
Confidence            65556666555444

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=89.01  E-value=0.3  Score=48.97  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=30.5

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|||+|.+|.++|+.|++.|.+|+|+.+..
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~   59 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   59 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            469999999999999999999999999999864

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=89.01  E-value=0.29  Score=52.02  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=31.9

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..++|+|||+|.+|.++++.|++.|.+|+|+.++.
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~  424 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGR  424 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            35789999999999999999999999999999863

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=89.00  E-value=0.49  Score=47.80  Aligned_cols=37  Identities=41%  Similarity=0.577  Sum_probs=33.0

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++|++||-|+ ||.|++++..|.+.|++|++++|+.
T Consensus       210 ~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~  247 (454)
T 3u0b_A          210 PLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDG  247 (454)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGG
T ss_pred             CCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            467899999985 8899999999999999999999964

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=88.93  E-value=0.39  Score=49.55  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=30.5

Q ss_pred             CCEEEEEechhHHHHHHHHHHh---CCCeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKS---RGARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~---~G~~i~v~nR~  400 (409)
                      .++|+|+|+|-+|.++|.+|++   .|.+|+|+.+.
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~   60 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAP   60 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCC
Confidence            4689999999999999999999   88999999985

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=88.93  E-value=3.5  Score=39.98  Aligned_cols=79  Identities=16%  Similarity=0.252  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhcCCCEEEEEecC--C-----CCC----CC-------------hhHHHHHHhcC--CCcEEEEeccC--CC
Q 015310           25 VLSNMYQAKAEGADVVEIRLDC--I-----NNF----QP-------------GKDLEIILTKK--PLPVLIVYRPK--WA   76 (409)
Q Consensus        25 ~~~~~~~~~~~~aD~vElRlD~--l-----~~~----~~-------------~~~l~~l~~~~--~~PiI~T~R~~--~e   76 (409)
                      +...++++.+.|.|.||+..-+  |     ...    .+             .+.++.+++..  +.||.+-++..  .+
T Consensus       154 f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~  233 (349)
T 3hgj_A          154 FVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGE  233 (349)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCST
T ss_pred             HHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccC
Confidence            3444566677899999999865  1     111    11             12334445544  67888777653  23


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310           77 GGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~dyvDiEl  106 (409)
                      ||.   +.++..++.+.+.+.|+|||++-.
T Consensus       234 ~g~---~~~~~~~la~~L~~~Gvd~i~vs~  260 (349)
T 3hgj_A          234 GGW---SLEDTLAFARRLKELGVDLLDCSS  260 (349)
T ss_dssp             TSC---CHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCC---CHHHHHHHHHHHHHcCCCEEEEec
Confidence            442   567788899999999999999853

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=88.91  E-value=0.31  Score=50.30  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|+|+|.+|.+++..|++.|++|+|+.|..
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~   59 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTD   59 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            469999999999999999999999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=88.86  E-value=0.36  Score=51.74  Aligned_cols=35  Identities=23%  Similarity=0.206  Sum_probs=32.0

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..++++|||+|.+|.++++.|.+.|.+|+|+.+..
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~  422 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE  422 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            35789999999999999999999999999999863

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=88.84  E-value=0.31  Score=46.27  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=32.1

Q ss_pred             CCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          368 GRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       368 ~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      .+++.||| +|-+|.+++..|.+.|.+|++++|+.+
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            46899999 999999999999999999999999864

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=88.83  E-value=0.28  Score=48.38  Aligned_cols=32  Identities=28%  Similarity=0.390  Sum_probs=29.9

Q ss_pred             CEEEEEechhHHHHHHHHHHhC--CCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKSR--GARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~--G~~i~v~nR~  400 (409)
                      ..|+|||+|-+|.++|+.|++.  |.+|+|+.+.
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~   70 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG   70 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            4699999999999999999999  9999999985

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=88.81  E-value=0.47  Score=45.31  Aligned_cols=150  Identities=17%  Similarity=0.231  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCChhHHHHHH---h---cCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLEIIL---T---KKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~~~~~~l~~l~---~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (409)
                      +.+++++.+++..+.|||+|.+=...-..    .+..+++.++.   +   ..+.|+-+-              ..+-+.
T Consensus        50 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiSID--------------T~~~~V  115 (294)
T 2dqw_A           50 DPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVSVD--------------TRKPEV  115 (294)
T ss_dssp             ---CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEEEE--------------CSCHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEE--------------CCCHHH
Confidence            34667888888889999999888754322    12233444332   1   125564321              133467


Q ss_pred             HHHHHHcCCcEE-EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCH---------------hHHHHHHHHHHHcCC
Q 015310           91 LHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE---------------EDLGYLVSRMQATGA  154 (409)
Q Consensus        91 l~~~~~~g~dyv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~---------------~~l~~~~~~~~~~ga  154 (409)
                      .+++++.|+++| ||--...++.++ +.  .+.+..+|+.+-. +++|..               +.+.+.++.+.+.|-
T Consensus       116 a~aAl~aGa~iINdVsg~~d~~m~~-v~--a~~~~~vVlmh~~-eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi  191 (294)
T 2dqw_A          116 AEEALKLGAHLLNDVTGLRDERMVA-LA--ARHGVAAVVMHMP-VPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGV  191 (294)
T ss_dssp             HHHHHHHTCSEEECSSCSCCHHHHH-HH--HHHTCEEEEECCS-SSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCEEEECCCCCChHHHH-HH--HHhCCCEEEEcCC-CCCCccccccCccccHHHHHHHHHHHHHHHHHHCCC
Confidence            888999999887 554443333332 22  2457788887432 166652               346777888999997


Q ss_pred             CEEEEEeec-----CCHhHHHHHHHHhcc---CCCCEEEEEcCcc
Q 015310          155 DIIKLVFSV-----NDITEIARIFQLLSH---CQVPIIAYSVGER  191 (409)
Q Consensus       155 DivKia~~~-----~~~~D~~~ll~~~~~---~~~p~i~~~MG~~  191 (409)
                      +  +|..=|     ++.++++.+++-+.+   .+.|+. ++.+..
T Consensus       192 ~--~IilDPG~Gf~kt~~~n~~ll~~l~~~~~~g~Pvl-~G~Srk  233 (294)
T 2dqw_A          192 P--QVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVL-VGLSRK  233 (294)
T ss_dssp             S--CEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBE-ECCTTC
T ss_pred             C--cEEEcCCCCcccCHHHHHHHHHHHHHHhcCCCCEE-EEeccc
Confidence            7  887644     577888888776643   356643 344443

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=88.76  E-value=0.26  Score=47.15  Aligned_cols=37  Identities=27%  Similarity=0.266  Sum_probs=32.1

Q ss_pred             EEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          370 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       370 ~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ++||+|+ ||.|.+++..+...|++|+++.++.+|.+.
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~  190 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADY  190 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHH
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            7999998 999999999999999999988888766543

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=88.76  E-value=0.26  Score=47.07  Aligned_cols=37  Identities=22%  Similarity=0.169  Sum_probs=32.4

Q ss_pred             EEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          370 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       370 ~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      +++|+|+ ||.|.+++..+...|++|+++.++.++.+.
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~  189 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDY  189 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            7999998 999999999999999999999988766544

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=88.72  E-value=2.7  Score=41.18  Aligned_cols=122  Identities=18%  Similarity=0.216  Sum_probs=69.7

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChh---HHHHHHhcCCCcEEEEeccCCCCCCCCCCHH
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK---DLEIILTKKPLPVLIVYRPKWAGGLYEGDEH   85 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~---~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~   85 (409)
                      +.|.+..|...-+..++...+.  ...|..++.      .+.++.+   .+.++++..++|+.+.+-..        +  
T Consensus        45 ~~Pii~apM~~vt~~~lA~avA--~~GGlgii~------~~~s~e~~~~~I~~vk~~~~~pvga~ig~~--------~--  106 (361)
T 3khj_A           45 KIPLISSAMDTVTEHLMAVGMA--RLGGIGIIH------KNMDMESQVNEVLKVKNSGGLRVGAAIGVN--------E--  106 (361)
T ss_dssp             SSSEEECSSTTTCSHHHHHHHH--HTTCEEEEC------SSSCHHHHHHHHHHHHHTTCCCCEEEECTT--------C--
T ss_pred             CCCEEeecCCCCCcHHHHHHHH--HcCCCeEEe------cCCCHHHHHHHHHHHHhccCceEEEEeCCC--------H--
Confidence            4577878887766666654332  235666664      1223322   23334444578887776321        1  


Q ss_pred             HHHHHHHHHHHcCCcEEEEeccCcc--chHHHHHhccC-CCcEEEE-eccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           86 KRLEALHLAEDLGADYVDFELKVAS--NILGKQYSSHQ-SGTRFIV-SCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        86 ~~~~ll~~~~~~g~dyvDiEl~~~~--~~~~~l~~~~~-~~~kiI~-S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                        .+.++.+++.|+|+|.|......  ...+.+...++ -+.++|+ ..+    |  .+    ..+++.+.|+|.+|+.
T Consensus       107 --~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~----t--~e----~A~~l~~aGaD~I~VG  173 (361)
T 3khj_A          107 --IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVV----T--EE----ATKELIENGADGIKVG  173 (361)
T ss_dssp             --HHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEEC----S--HH----HHHHHHHTTCSEEEEC
T ss_pred             --HHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCC----C--HH----HHHHHHHcCcCEEEEe
Confidence              44566778889999988655432  22222222222 2788887 432    2  22    3466778899999984

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=88.69  E-value=2.8  Score=39.92  Aligned_cols=131  Identities=15%  Similarity=0.136  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHh-cCCCcEEEEeccCCCCCCCC-CCHHHHHHHHHHHHHcC
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT-KKPLPVLIVYRPKWAGGLYE-GDEHKRLEALHLAEDLG   98 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~-~~~~PiI~T~R~~~eGG~~~-~~~~~~~~ll~~~~~~g   98 (409)
                      .++++...+... ..+||+|=+-.        . .+....+ ..+.|+|+.+=....  .++ .+++.-..-.+.+++.|
T Consensus        71 gl~~~~~~i~~l-~~g~dav~~~~--------G-~~~~~~~~~~~~~lil~l~~~t~--~~~~~~~~~l~~~ve~Av~~G  138 (295)
T 3glc_A           71 GLERIDINIAPL-FEHADVLMCTR--------G-ILRSVVPPATNRPVVLRASGANS--ILAELSNEAVALSMDDAVRLN  138 (295)
T ss_dssp             TCTTHHHHTGGG-GGGCSEEEECH--------H-HHHHHSCGGGCCCEEEECEECCC--TTSCTTCCEECSCHHHHHHTT
T ss_pred             chhhhHHHHHHh-hcCCCEEEECH--------h-HHhhhccccCCccEEEEEcCCCc--CCCCCccchhHHHHHHHHHCC
Confidence            345554445443 34688873221        1 1222222 237899987642211  011 11111111256788999


Q ss_pred             CcEEEEeccCcc----chH---HHHH-hccCCCcEEEEeccCCCCCCCHhH-HHHHHHHHHHcCCCEEEEEeec
Q 015310           99 ADYVDFELKVAS----NIL---GKQY-SSHQSGTRFIVSCNLDCETPSEED-LGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus        99 ~dyvDiEl~~~~----~~~---~~l~-~~~~~~~kiI~S~H~f~~tp~~~~-l~~~~~~~~~~gaDivKia~~~  163 (409)
                      +|.|++=++...    +.+   .+++ ..++.+.++|+-++.-......++ +....+.+.++|||++|.-.++
T Consensus       139 AdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t~  212 (295)
T 3glc_A          139 SCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVE  212 (295)
T ss_dssp             CSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECCT
T ss_pred             CCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCCH
Confidence            999999876543    122   2344 356678899886543111112234 4556677889999999998653

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=88.61  E-value=0.45  Score=47.48  Aligned_cols=36  Identities=39%  Similarity=0.631  Sum_probs=32.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +.+++++|+|+|..||.++.++.++|+++++++.+.
T Consensus        33 ~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~   68 (419)
T 4e4t_A           33 LPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDP   68 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            468999999999999999999999999999998764

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=88.57  E-value=3  Score=40.00  Aligned_cols=86  Identities=16%  Similarity=0.111  Sum_probs=58.8

Q ss_pred             eEEEeeccCC-------HHHHHHHHHHHHhcCCCEEEEEecCCC-C----CCC----hhHHHHHHhcC---------CCc
Q 015310           12 MICAPLMAQS-------VEQVLSNMYQAKAEGADVVEIRLDCIN-N----FQP----GKDLEIILTKK---------PLP   66 (409)
Q Consensus        12 ~icv~l~~~~-------~~e~~~~~~~~~~~~aD~vElRlD~l~-~----~~~----~~~l~~l~~~~---------~~P   66 (409)
                      .+.+.|...+       .+++.+.++.+. .++|.||+-+-+=. +    ...    .+.++.+++..         ++|
T Consensus       135 ~~~v~i~~~~~~~i~~~~~~~~~aa~~~~-~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~P  213 (336)
T 1f76_A          135 VLGINIGKNKDTPVEQGKDDYLICMEKIY-AYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVP  213 (336)
T ss_dssp             EEEEEECCCTTSCGGGTHHHHHHHHHHHG-GGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             cEEEEecCCCCCcccccHHHHHHHHHHHh-ccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCc
Confidence            5678887766       788888777764 48999999763211 0    001    12334444433         799


Q ss_pred             EEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           67 VLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        67 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      +++-++..       .++++..++.+.+.+.|+|+|++-
T Consensus       214 v~vKi~~~-------~~~~~~~~~a~~l~~~Gvd~i~vs  245 (336)
T 1f76_A          214 IAVKIAPD-------LSEEELIQVADSLVRHNIDGVIAT  245 (336)
T ss_dssp             EEEECCSC-------CCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred             eEEEecCC-------CCHHHHHHHHHHHHHcCCcEEEEe
Confidence            99877642       456777888889999999999985

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=88.49  E-value=0.49  Score=48.83  Aligned_cols=39  Identities=26%  Similarity=0.354  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ..+.|+++.|+|.|-+|++++..|...|++|++++|+.+
T Consensus       138 ~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~  176 (529)
T 1ygy_A          138 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS  176 (529)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCC
Confidence            457899999999999999999999999999999999753

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=88.46  E-value=1.1  Score=45.19  Aligned_cols=50  Identities=22%  Similarity=0.237  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEE
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF  397 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~  397 (409)
                      ++|.+..++..+...         +.+++|++|+|-|.|-+|..++.-|.++|++|+.+
T Consensus       215 g~Gv~~~~~~~~~~~---------~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVav  264 (450)
T 4fcc_A          215 GYGLVYFTEAMLKRH---------GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITA  264 (450)
T ss_dssp             HHHHHHHHHHHHHHT---------TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             eeeHHHHHHHHHHHc---------CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEE
Confidence            567777777766532         25789999999999999999999999999975543

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=88.43  E-value=0.34  Score=49.50  Aligned_cols=33  Identities=33%  Similarity=0.383  Sum_probs=30.0

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      -.|+|||+|.+|.+++..|++.|.+|+|+.+..
T Consensus        42 ~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~   74 (510)
T 4at0_A           42 ADVVVAGYGIAGVAASIEAARAGADVLVLERTS   74 (510)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            359999999999999999999999999998763

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=88.41  E-value=0.67  Score=44.19  Aligned_cols=88  Identities=15%  Similarity=0.183  Sum_probs=62.5

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCC---EEEEEecC--CCC---C--CC---hhHHHHHHhcCCCcEEEEeccCCC
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGAD---VVEIRLDC--INN---F--QP---GKDLEIILTKKPLPVLIVYRPKWA   76 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD---~vElRlD~--l~~---~--~~---~~~l~~l~~~~~~PiI~T~R~~~e   76 (409)
                      .| +.+.|.+.+.+++.+.++.+.+.|+|   .||+-+-+  ...   +  ++   .+.++.+++..++|+++-++..  
T Consensus        94 ~p-~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~--  170 (314)
T 2e6f_A           94 KP-LFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPY--  170 (314)
T ss_dssp             CC-EEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCC--
T ss_pred             Cc-EEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC--
Confidence            44 56889999999999999988888899   99996531  100   0  11   1234444444589999988753  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcC-CcEEEEe
Q 015310           77 GGLYEGDEHKRLEALHLAEDLG-ADYVDFE  105 (409)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g-~dyvDiE  105 (409)
                           .+.++..++.+.+.+.| +|+|++-
T Consensus       171 -----~~~~~~~~~a~~~~~aG~~d~i~v~  195 (314)
T 2e6f_A          171 -----FDIAHFDTAAAVLNEFPLVKFVTCV  195 (314)
T ss_dssp             -----CCHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred             -----CCHHHHHHHHHHHHhcCCceEEEEe
Confidence                 25667777888889999 9999864

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=88.40  E-value=4.1  Score=39.28  Aligned_cols=80  Identities=18%  Similarity=0.207  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecC--C------C--CC-CC-------------hhHHHHHHhcCCCcEEEEeccCC--C
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDC--I------N--NF-QP-------------GKDLEIILTKKPLPVLIVYRPKW--A   76 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~--l------~--~~-~~-------------~~~l~~l~~~~~~PiI~T~R~~~--e   76 (409)
                      +++.+.++++.+.|.|.||+-.-+  |      +  +. .+             .+.++.+++..+.|+.+-++...  +
T Consensus       144 ~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~  223 (338)
T 1z41_A          144 QEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTD  223 (338)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCST
T ss_pred             HHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCC
Confidence            445566677778899999998742  1      1  10 11             12334455556888888777542  3


Q ss_pred             CCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           77 GGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        77 GG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      ||   .+.++..++.+.+.+.|+|||+|-
T Consensus       224 ~g---~~~~~~~~~a~~l~~~Gvd~i~v~  249 (338)
T 1z41_A          224 KG---LDIADHIGFAKWMKEQGVDLIDCS  249 (338)
T ss_dssp             TS---CCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CC---CCHHHHHHHHHHHHHcCCCEEEEe
Confidence            33   256778889999999999999984

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=88.37  E-value=7.7  Score=35.03  Aligned_cols=146  Identities=14%  Similarity=0.153  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEec-C-C-CCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLD-C-I-NNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD-~-l-~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (409)
                      +..++   ++.+.+.|+|.+.++.. . + ..... +.++.+++..++|+++.      ||-.  +.+ +   .+.+++.
T Consensus        33 d~~~~---a~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~------ggI~--~~~-~---~~~~l~~   96 (244)
T 1vzw_A           33 SPLEA---ALAWQRSGAEWLHLVDLDAAFGTGDNR-ALIAEVAQAMDIKVELS------GGIR--DDD-T---LAAALAT   96 (244)
T ss_dssp             CHHHH---HHHHHHTTCSEEEEEEHHHHHTSCCCH-HHHHHHHHHCSSEEEEE------SSCC--SHH-H---HHHHHHT
T ss_pred             CHHHH---HHHHHHcCCCEEEEecCchhhcCCChH-HHHHHHHHhcCCcEEEE------CCcC--CHH-H---HHHHHHc
Confidence            44444   45555689999999852 1 2 22222 45777777789999984      4432  232 2   4556678


Q ss_pred             CCcEEEEeccC--ccchHHHHHhccCCCcEEE--Eec-------cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCH
Q 015310           98 GADYVDFELKV--ASNILGKQYSSHQSGTRFI--VSC-------NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDI  166 (409)
Q Consensus        98 g~dyvDiEl~~--~~~~~~~l~~~~~~~~kiI--~S~-------H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~  166 (409)
                      |+|.|=+=...  ..+.+.+++...  +.+++  ++.       |.+...-.  +..+..+++.+.|+|.+=+-....+.
T Consensus        97 Gad~V~lg~~~l~~p~~~~~~~~~~--g~~~~~~l~~~~g~v~~~g~~~~~~--~~~e~~~~~~~~G~~~i~~~~~~~~~  172 (244)
T 1vzw_A           97 GCTRVNLGTAALETPEWVAKVIAEH--GDKIAVGLDVRGTTLRGRGWTRDGG--DLYETLDRLNKEGCARYVVTDIAKDG  172 (244)
T ss_dssp             TCSEEEECHHHHHCHHHHHHHHHHH--GGGEEEEEEEETTEECCSSSCCCCC--BHHHHHHHHHHTTCCCEEEEEC----
T ss_pred             CCCEEEECchHhhCHHHHHHHHHHc--CCcEEEEEEccCCEEEEcCcccCCC--CHHHHHHHHHhCCCCEEEEeccCccc
Confidence            99987764432  222334443221  12333  333       32222111  34556677778899855332211111


Q ss_pred             ----hHHHHHHHHhccCCCCEEEE
Q 015310          167 ----TEIARIFQLLSHCQVPIIAY  186 (409)
Q Consensus       167 ----~D~~~ll~~~~~~~~p~i~~  186 (409)
                          -|...+-++....+.|+|+.
T Consensus       173 ~~~g~~~~~~~~i~~~~~ipvia~  196 (244)
T 1vzw_A          173 TLQGPNLELLKNVCAATDRPVVAS  196 (244)
T ss_dssp             ---CCCHHHHHHHHHTCSSCEEEE
T ss_pred             ccCCCCHHHHHHHHHhcCCCEEEE
Confidence                12233333334447788764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=88.34  E-value=0.96  Score=46.96  Aligned_cols=59  Identities=20%  Similarity=0.326  Sum_probs=42.8

Q ss_pred             CCeEEEEcCcHHHHHH--HHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeC
Q 015310          329 DGKLIGYNTDCEASIT--AIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       329 ~g~l~G~NTD~~G~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR  399 (409)
                      +|+.+|-.+|-.....  .|++.+.            .......++|||+|.+|.+++..|++.|.+|+|+.+
T Consensus        78 ~g~~igG~~~l~~~~~~g~L~~~l~------------~~~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~  138 (598)
T 2x8g_A           78 RGKFIGDSQTVLKYYSNDELAGIVN------------ESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDY  138 (598)
T ss_dssp             TTEEEECHHHHHHHHHTTCHHHHHH------------CCSSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEEeeehhhhhhhcCcchhhcc------------cccccccEEEECCCccHHHHHHHHHhCCCeEEEEec
Confidence            6777776666444432  3444443            112346899999999999999999999999999986

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=88.34  E-value=0.33  Score=48.08  Aligned_cols=38  Identities=21%  Similarity=0.092  Sum_probs=33.2

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+++|||.|| |+.|++++..|.+.|.+|+++.|+.++
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~  105 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNE  105 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSH
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCCh
Confidence            45679999997 889999999998888899999998763

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=88.30  E-value=4.3  Score=36.79  Aligned_cols=88  Identities=15%  Similarity=0.232  Sum_probs=54.0

Q ss_pred             eeEEEeecc----CCHHHHHHHHHHHHhcCCCEEEEEecCC--CCCCCh---hHHHHHHhcCCCcEEEEeccCCCCCCCC
Q 015310           11 TMICAPLMA----QSVEQVLSNMYQAKAEGADVVEIRLDCI--NNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYE   81 (409)
Q Consensus        11 ~~icv~l~~----~~~~e~~~~~~~~~~~~aD~vElRlD~l--~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~   81 (409)
                      .++|..+.+    ...+....+++++.+.|+|.||+-+.+-  ...+..   +.+..+++..+ |+++-+.  -|.+.  
T Consensus        54 v~v~~v~~~P~g~~~~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~-pv~vKvi--~e~~~--  128 (225)
T 1mzh_A           54 VKVCCVIGFPLGLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETP-SAVHKVI--VETPY--  128 (225)
T ss_dssp             SEEEEEESTTTCCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCT-TSEEEEE--CCGGG--
T ss_pred             CceeeEecCCCCccchhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhc-CceEEEE--EeCCC--
Confidence            456654432    3345455667788889999999655532  111211   34555555556 8776652  11122  


Q ss_pred             CCHHHHHHHHHHHHHcCCcEEE
Q 015310           82 GDEHKRLEALHLAEDLGADYVD  103 (409)
Q Consensus        82 ~~~~~~~~ll~~~~~~g~dyvD  103 (409)
                      .++++-.++.+.+.+.|+|+|.
T Consensus       129 l~~~~~~~~a~~a~eaGad~I~  150 (225)
T 1mzh_A          129 LNEEEIKKAVEICIEAGADFIK  150 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCEEE
Confidence            3667788888899999999994

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=88.29  E-value=14  Score=33.28  Aligned_cols=148  Identities=17%  Similarity=0.134  Sum_probs=79.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (409)
                      .+.+++.+-++++.+.|++.+=.        .+ ..+....+.. +.++.-.. ..+-|-.   ..+....-.+.+++.|
T Consensus        17 ~t~~~i~~l~~~a~~~g~~~v~v--------~~-~~v~~~~~~l~~v~v~~v~-~~P~g~~---~~~~k~~~~~~A~~~G   83 (225)
T 1mzh_A           17 LSEKEIEEFVLKSEELGIYAVCV--------NP-YHVKLASSIAKKVKVCCVI-GFPLGLN---KTSVKVKEAVEAVRDG   83 (225)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEE--------CG-GGHHHHHHHCSSSEEEEEE-STTTCCS---CHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhCCeEEEE--------CH-HHHHHHHHHhcCCceeeEe-cCCCCcc---chhhhHHHHHHHHHcC
Confidence            35677887788887888888631        11 1222222112 44544222 1222221   2334444457888999


Q ss_pred             CcEEEEeccCcc-------c---hHHHHHhc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEee----c
Q 015310           99 ADYVDFELKVAS-------N---ILGKQYSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFS----V  163 (409)
Q Consensus        99 ~dyvDiEl~~~~-------~---~~~~l~~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~----~  163 (409)
                      +|.||+.++...       .   .++.++.. .+--.|+|+---+    .+.+++.+..+.+.+.|+|.+|..+-    .
T Consensus        84 ad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~~~----l~~~~~~~~a~~a~eaGad~I~tstg~~~gg  159 (225)
T 1mzh_A           84 AQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPY----LNEEEIKKAVEICIEAGADFIKTSTGFAPRG  159 (225)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGG----CCHHHHHHHHHHHHHHTCSEEECCCSCSSSC
T ss_pred             CCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeCCC----CCHHHHHHHHHHHHHhCCCEEEECCCCCCCC
Confidence            999998776532       1   22333322 1122445433222    23467888888899999999977651    1


Q ss_pred             CCHhHHHHHHHHhccCCCCEEE
Q 015310          164 NDITEIARIFQLLSHCQVPIIA  185 (409)
Q Consensus       164 ~~~~D~~~ll~~~~~~~~p~i~  185 (409)
                      .+.+++..+.+.. ..+.|+++
T Consensus       160 a~~~~i~~v~~~v-~~~ipVia  180 (225)
T 1mzh_A          160 TTLEEVRLIKSSA-KGRIKVKA  180 (225)
T ss_dssp             CCHHHHHHHHHHH-TTSSEEEE
T ss_pred             CCHHHHHHHHHHh-CCCCcEEE
Confidence            2445554444433 12456655

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=88.26  E-value=0.37  Score=49.38  Aligned_cols=34  Identities=26%  Similarity=0.225  Sum_probs=31.4

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+++|||+|.+|.++++.|.+.|.+|+|+.++.
T Consensus        43 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~   76 (523)
T 1mo9_A           43 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   76 (523)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3579999999999999999999999999999875

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=88.22  E-value=0.46  Score=47.38  Aligned_cols=39  Identities=28%  Similarity=0.388  Sum_probs=35.9

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ..+.||++.|+|-|-+|+.++..|..+|++|+.++|+..
T Consensus       141 ~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~  179 (404)
T 1sc6_A          141 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK  179 (404)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            468899999999999999999999999999999999753

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=88.14  E-value=0.35  Score=50.07  Aligned_cols=33  Identities=33%  Similarity=0.557  Sum_probs=30.4

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|||+|.+|.+++..|++.|.+|+|+.+..
T Consensus       127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~  159 (571)
T 1y0p_A          127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEP  159 (571)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            469999999999999999999999999998764

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=88.13  E-value=14  Score=35.09  Aligned_cols=124  Identities=14%  Similarity=0.103  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhcCCCEEEEEecCCCCCCC--hhHHHHHH---hcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           25 VLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIIL---TKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        25 ~~~~~~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +..+++++...|||.|=+++..-.+.+.  .+++.+++   +...+|+|+-.   ..|+....+++.-....+.+.++|+
T Consensus       127 l~~~ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~---~~G~~~~~d~e~i~~aariA~elGA  203 (295)
T 3glc_A          127 VALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVT---GVGKDMVRDQRYFSLATRIAAEMGA  203 (295)
T ss_dssp             ECSCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEE---CC----CCSHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEEC---CCCCccCCCHHHHHHHHHHHHHhCC
Confidence            3345667778999999999876543221  12233333   23479988753   2355544444433346678889999


Q ss_pred             cEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 015310          100 DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK  158 (409)
Q Consensus       100 dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivK  158 (409)
                      |||=..+.  .+.++++...  ..+.||+|=-.  ++ +.++..+.++++.+.||+-+=
T Consensus       204 D~VKt~~t--~e~~~~vv~~--~~vPVv~~GG~--~~-~~~~~l~~v~~ai~aGA~Gv~  255 (295)
T 3glc_A          204 QIIKTYYV--EKGFERIVAG--CPVPIVIAGGK--KL-PEREALEMCWQAIDQGASGVD  255 (295)
T ss_dssp             SEEEEECC--TTTHHHHHHT--CSSCEEEECCS--CC-CHHHHHHHHHHHHHTTCSEEE
T ss_pred             CEEEeCCC--HHHHHHHHHh--CCCcEEEEECC--CC-CHHHHHHHHHHHHHhCCeEEE
Confidence            99999864  2445666532  34678877432  22 357888888888888998443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=88.01  E-value=0.37  Score=49.99  Aligned_cols=35  Identities=14%  Similarity=0.259  Sum_probs=31.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhC--CCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~--G~~i~v~nR~~  401 (409)
                      ..++++|||+|.+|-++|+.|.+.  |.+|+|+++..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~   71 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGE   71 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCC
Confidence            357899999999999999999998  67999999874

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=87.87  E-value=0.36  Score=50.22  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.2

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|+|+|.+|.++|+.|++.|.+|+|+.|..
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~   82 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLV   82 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            369999999999999999999999999999864

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=87.85  E-value=0.33  Score=50.31  Aligned_cols=33  Identities=33%  Similarity=0.494  Sum_probs=30.3

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|||+|.+|.+++..|++.|.+|+|+.+..
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~  154 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP  154 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            479999999999999999999999999998764

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=87.80  E-value=0.86  Score=46.24  Aligned_cols=52  Identities=13%  Similarity=0.149  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEeC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI  399 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~nR  399 (409)
                      ++|.+..++..+.+.         +.+++|++|+|-|.|-+|..++.-|.++|++|+ |.+.
T Consensus       232 g~Gv~~~~~~~l~~~---------G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~  284 (470)
T 2bma_A          232 GYGLVYFVLEVLKSL---------NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDS  284 (470)
T ss_dssp             HHHHHHHHHHHHHTT---------TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEET
T ss_pred             hHHHHHHHHHHHHhc---------cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeC
Confidence            467777877776532         256889999999999999999999999999654 8875

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=87.77  E-value=0.31  Score=48.61  Aligned_cols=64  Identities=17%  Similarity=0.132  Sum_probs=45.8

Q ss_pred             EEEEcCcHHHHHHHHHHHH---HhcCcCCCCCCCCCCCCCCEEEEEec-hhHHHHHHHHHHh-CCCeEEEEeCChHH
Q 015310          332 LIGYNTDCEASITAIEDAI---KERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKS-RGARVVIFDIDFEQ  403 (409)
Q Consensus       332 l~G~NTD~~G~~~~l~~~l---~~~~~~~~~~~~~~~~~~~~vlvlGa-GGaarai~~aL~~-~G~~i~v~nR~~~k  403 (409)
                      ++-.|+-=.|..+..++..   +..++        ....+|.+||.|+ +|.|+|++..|++ .|++|.+++|+.++
T Consensus        16 ~~~~~~hp~gc~~~v~~qi~~~~~~~~--------~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~   84 (405)
T 3zu3_A           16 FICVTAHPTGCEANVKKQIDYVTTEGP--------IANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPG   84 (405)
T ss_dssp             TEECCCCHHHHHHHHHHHHHHHHHHCC--------CTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_pred             eeecCCCCHHHHHHHHHHHHHHHhcCC--------cCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchh
Confidence            5666777788866655432   11111        2235789999986 6899999999999 99999999887543

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=87.77  E-value=0.33  Score=46.23  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=28.3

Q ss_pred             CEEEEEechhHHHHHHHHHHh--CCCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKS--RGARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~--~G~~i~v~nR~  400 (409)
                      ..|+|||+|.+|.++|+.|++  .|.+|+|+.+.
T Consensus        66 ~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~   99 (326)
T 3fpz_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS   99 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            469999999999999999974  58899999875

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=87.68  E-value=2.6  Score=38.79  Aligned_cols=104  Identities=9%  Similarity=0.060  Sum_probs=67.1

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEe-cC--CCCCCC-hhHHHHHHhcC--CCcEEEEeccCCCCCCCCCCHH
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DC--INNFQP-GKDLEIILTKK--PLPVLIVYRPKWAGGLYEGDEH   85 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D~--l~~~~~-~~~l~~l~~~~--~~PiI~T~R~~~eGG~~~~~~~   85 (409)
                      +|+.+|..-|..++.++++.+.+.|+|++++++ |-  .++.+- .+.++.+++.+  +.++++.            +++
T Consensus        15 ~i~psila~D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~~~v~~lr~~~~~DvhLMv~------------~p~   82 (237)
T 3cu2_A           15 KLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFPTHCFKDVHLMVR------------NQL   82 (237)
T ss_dssp             CEEEEGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCTHHHHTSCTTSEEEEEEECS------------CHH
T ss_pred             eEEEeeeeCCcccHHHHHHHHHHcCCCEEEEEEecCccccchhhhHHHHHHHhhhCCCCeEEEEE------------CHH
Confidence            599999999998898889988888999999998 41  122221 13455555433  2333321            223


Q ss_pred             HHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCC---------CcEEEEec
Q 015310           86 KRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQS---------GTRFIVSC  130 (409)
Q Consensus        86 ~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~---------~~kiI~S~  130 (409)
                      .   +++.+.+.|+|+|-+=....+...+.+...++.         +.++.++.
T Consensus        83 ~---~i~~~~~aGAd~itvH~ea~~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l  133 (237)
T 3cu2_A           83 E---VAKAVVANGANLVTLQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACL  133 (237)
T ss_dssp             H---HHHHHHHTTCSEEEEETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEE
T ss_pred             H---HHHHHHHcCCCEEEEecCCcccHHHHHHHHHhcccccccccCCceEEEEE
Confidence            3   455677889999777666554433333345566         77888887

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=87.67  E-value=0.65  Score=46.51  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=35.4

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+.||++.|+|.|.+|++++..|..+|++|+.++|+.
T Consensus       152 ~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~  189 (416)
T 3k5p_A          152 REVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSD  189 (416)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             ccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcc
Confidence            56889999999999999999999999999999999874

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=87.62  E-value=0.3  Score=48.57  Aligned_cols=32  Identities=31%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCC-CeEEEEeC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDI  399 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G-~~i~v~nR  399 (409)
                      ...|+|||+|-+|.++|+.|++.| .+|+|+.+
T Consensus        23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            357999999999999999999999 79999998

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=87.60  E-value=16  Score=32.99  Aligned_cols=114  Identities=11%  Similarity=0.046  Sum_probs=65.2

Q ss_pred             CCeeEEEeeccCCH--HHHHHHHHHHHhcCCCEEEEEecCCCCCCC---------------------hhHHHHHHhcCCC
Q 015310            9 NTTMICAPLMAQSV--EQVLSNMYQAKAEGADVVEIRLDCINNFQP---------------------GKDLEIILTKKPL   65 (409)
Q Consensus         9 ~~~~icv~l~~~~~--~e~~~~~~~~~~~~aD~vElRlD~l~~~~~---------------------~~~l~~l~~~~~~   65 (409)
                      +++.++.+|+.-+.  ++..+.++.+.+. +|.+|+-+-+-++..+                     .+.++++++..++
T Consensus         3 ~~~~~~~~i~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~   81 (248)
T 1geq_A            3 KDGSLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSST   81 (248)
T ss_dssp             CTTEEEEEEETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCC
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCC
Confidence            56678888887776  6888888888777 9999987543222111                     1344556666688


Q ss_pred             cEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEec
Q 015310           66 PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSC  130 (409)
Q Consensus        66 PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~  130 (409)
                      |+++-.+...   .+...   ..+.++.+++.|+|+|=+--...++ .++++ ..++.+.+++...
T Consensus        82 pv~~~~~~~~---~~~~~---~~~~~~~~~~~Gad~v~~~~~~~~~-~~~~~~~~~~~g~~~~~~i  140 (248)
T 1geq_A           82 PIVLMTYYNP---IYRAG---VRNFLAEAKASGVDGILVVDLPVFH-AKEFTEIAREEGIKTVFLA  140 (248)
T ss_dssp             CEEEEECHHH---HHHHC---HHHHHHHHHHHTCCEEEETTCCGGG-HHHHHHHHHHHTCEEEEEE
T ss_pred             CEEEEeccch---hhhcC---HHHHHHHHHHCCCCEEEECCCChhh-HHHHHHHHHHhCCCeEEEE
Confidence            9876542100   00000   1345667788899988874322222 22332 2233456666544

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=87.57  E-value=0.44  Score=48.20  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=30.0

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..++|||+|.+|.++|..|++.|.+|+|+.+.
T Consensus        26 ~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~   57 (491)
T 3urh_A           26 YDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKR   57 (491)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            56999999999999999999999999999975

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=87.46  E-value=4.2  Score=38.24  Aligned_cols=109  Identities=17%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             HHHHHhcCCCEEEEE--ecC----CCC---CCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           29 MYQAKAEGADVVEIR--LDC----INN---FQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        29 ~~~~~~~~aD~vElR--lD~----l~~---~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      ++.+.+.|+|++++|  ++.    +..   ....+.++.+++..++|+++..+..        +    .+.++.+.+.|+
T Consensus        34 a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~--------~----~~~~~~~~~aGa  101 (297)
T 2zbt_A           34 AVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIG--------H----FVEAMILEAIGV  101 (297)
T ss_dssp             HHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETT--------C----HHHHHHHHHTTC
T ss_pred             HHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccC--------C----HHHHHHHHHCCC
Confidence            344456799999986  221    111   1123456777777799999876532        2    234556677899


Q ss_pred             cEEEEeccC-ccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310          100 DYVDFELKV-ASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus       100 dyvDiEl~~-~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      |+||.-... ..++++.+... ..+..+++..|+    |  ++.    .++.+.|+|++.+-
T Consensus       102 d~v~~~~~~~~~~~~~~~~~~-~~~i~l~~~v~~----~--~~~----~~a~~~Gad~I~v~  152 (297)
T 2zbt_A          102 DFIDESEVLTPADEEHHIDKW-KFKVPFVCGARN----L--GEA----LRRIAEGAAMIRTK  152 (297)
T ss_dssp             SEEEEETTSCCSCSSCCCCGG-GCSSCEEEEESS----H--HHH----HHHHHTTCSEEEEC
T ss_pred             CEEeeeCCCChHHHHHHHHHh-CCCceEEeecCC----H--HHH----HHHHHcCCCEEEEc
Confidence            999764422 12222222211 124555555553    2  332    33578899997654

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=87.45  E-value=2.8  Score=38.71  Aligned_cols=46  Identities=11%  Similarity=0.187  Sum_probs=29.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC--hhHHHHHHhcCCCcEEE
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTKKPLPVLI   69 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~~~~~~PiI~   69 (409)
                      +.++.++.+   .+.|.|.||++.+.+...++  .++++++.+..++.+..
T Consensus        18 ~~~~~l~~~---~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~   65 (294)
T 3vni_A           18 DYKYYIEKV---AKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTV   65 (294)
T ss_dssp             CHHHHHHHH---HHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHH---HHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEE
Confidence            456665544   56799999999876544332  23455555667887765

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=87.44  E-value=5.1  Score=36.72  Aligned_cols=147  Identities=14%  Similarity=0.069  Sum_probs=87.7

Q ss_pred             cCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcC
Q 015310           19 AQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG   98 (409)
Q Consensus        19 ~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g   98 (409)
                      ..+.+++.+-++++.+.+++.|=+.--+      ..... .++..++. |.|+=.-+.|-.   +-+.+..=.+.+++.|
T Consensus        25 ~~t~~~i~~lc~eA~~~~~~aVcV~p~~------v~~a~-~l~~~~v~-v~tVigFP~G~~---~~~~K~~E~~~Ai~~G   93 (231)
T 3ndo_A           25 EATPSDVTALVDEAADLGVFAVCVSPPL------VSVAA-GVAPSGLA-IAAVAGFPSGKH---VPGIKATEAELAVAAG   93 (231)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEECGGG------HHHHH-HHCCTTCE-EEEEESTTTCCS---CHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhCCcEEEECHHH------HHHHH-HhcCCCCe-EEEEecCCCCCC---cHHHHHHHHHHHHHcC
Confidence            3457888888888888888877332111      11223 33333333 334433333332   3355555567899999


Q ss_pred             CcEEEEeccCcc----------chHHHHHhc-cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe-----e
Q 015310           99 ADYVDFELKVAS----------NILGKQYSS-HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF-----S  162 (409)
Q Consensus        99 ~dyvDiEl~~~~----------~~~~~l~~~-~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~-----~  162 (409)
                      +|-||+=++...          +.++.+..+ +....|+|+--.......+.+++....+-+.+.|||++|-.+     -
T Consensus        94 AdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~~~~  173 (231)
T 3ndo_A           94 ATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFHPSG  173 (231)
T ss_dssp             CSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCCTTC
T ss_pred             CCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCCCCC
Confidence            999998766531          122333322 333468888665431112457788888888899999999875     2


Q ss_pred             cCCHhHHHHHHHHh
Q 015310          163 VNDITEIARIFQLL  176 (409)
Q Consensus       163 ~~~~~D~~~ll~~~  176 (409)
                      ..+.+|+..+.+..
T Consensus       174 gAt~edv~lm~~~v  187 (231)
T 3ndo_A          174 GASVQAVEIMARTV  187 (231)
T ss_dssp             SCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHh
Confidence            34678886666553

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=87.25  E-value=0.45  Score=44.43  Aligned_cols=35  Identities=20%  Similarity=0.426  Sum_probs=32.2

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++++++|+|+|..|--++..|.++|.+|+|+.|.
T Consensus       150 ~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~  184 (314)
T 4a5l_A          150 FRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRR  184 (314)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHhCCeeeeeccc
Confidence            35789999999999999999999999999999875

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=87.24  E-value=8.7  Score=35.14  Aligned_cols=146  Identities=18%  Similarity=0.092  Sum_probs=72.9

Q ss_pred             HHHHHHHHhcCCCEEEEEecCCCC----CCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 015310           26 LSNMYQAKAEGADVVEIRLDCINN----FQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADY  101 (409)
Q Consensus        26 ~~~~~~~~~~~aD~vElRlD~l~~----~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dy  101 (409)
                      ...++.+.+.|+|.++++ |.-..    ....+.++.+++..++|+|+-      ||..+.  ++    ++.+++.|+|.
T Consensus        33 ~~~a~~~~~~Ga~~i~v~-d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~------ggi~~~--~~----i~~~~~~Gad~   99 (266)
T 2w6r_A           33 RDWVVEVEKRGAGEILLT-SIDRDGTKSGYDTEMIRFVRPLTTLPIIAS------GGAGKM--EH----FLEAFLAGADK   99 (266)
T ss_dssp             HHHHHHHHHHTCSEEEEE-ETTTSSCSSCCCHHHHHHHGGGCCSCEEEE------SCCCST--HH----HHHHHHHTCSE
T ss_pred             HHHHHHHHHCCCCEEEEE-ecCcccCCCcccHHHHHHHHHhcCCCEEEE------CCCCCH--HH----HHHHHHcCCcH
Confidence            334455566799999995 53321    112356677777779999983      453322  22    23445568887


Q ss_pred             EEEeccC-----ccchHHHHHhccCCC---cEEEEeccCC--C-----CCCCH-----hHHHHHHHHHHHcCCCEEEEEe
Q 015310          102 VDFELKV-----ASNILGKQYSSHQSG---TRFIVSCNLD--C-----ETPSE-----EDLGYLVSRMQATGADIIKLVF  161 (409)
Q Consensus       102 vDiEl~~-----~~~~~~~l~~~~~~~---~kiI~S~H~f--~-----~tp~~-----~~l~~~~~~~~~~gaDivKia~  161 (409)
                      |=+=-..     ..+.++++..  ..+   .+++++....  +     .+-.|     ....+..+++.+.|++.+=+..
T Consensus       100 v~lg~~~~~~~~~~~~~~~~~~--~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~  177 (266)
T 2w6r_A          100 ALAASVFHFREIDMRELKEYLK--KHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTS  177 (266)
T ss_dssp             EECCCCC------CHHHHHHCC------CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEE
T ss_pred             hhhhHHHHhCCCCHHHHHHHHH--HcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEEEe
Confidence            6553222     2233344431  122   2444443310  0     01111     1345666777788998764432


Q ss_pred             ecCC----HhHHHHHHHHhccCCCCEEEE
Q 015310          162 SVND----ITEIARIFQLLSHCQVPIIAY  186 (409)
Q Consensus       162 ~~~~----~~D~~~ll~~~~~~~~p~i~~  186 (409)
                      ..++    .-|...+-++....+.|+|+.
T Consensus       178 ~~~~g~~~g~~~~~i~~l~~~~~ipvia~  206 (266)
T 2w6r_A          178 IDRDGTKSGYDTEMIRFVRPLTTLPIIAS  206 (266)
T ss_dssp             TTTTTTCSCCCHHHHHHHGGGCCSCEEEE
T ss_pred             ecCCCCcCCCCHHHHHHHHHHcCCCEEEe
Confidence            2111    113333334444457888764

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=87.22  E-value=34  Score=36.47  Aligned_cols=209  Identities=12%  Similarity=0.080  Sum_probs=120.2

Q ss_pred             CHHHHHHHHHHHHhcCCCE--EEEE----ec----CCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADV--VEIR----LD----CINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~--vElR----lD----~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      +.++.++-++.+.+.|+|+  ||.=    +|    ++ ..++.+.+..+++.. +.++-...|..+-=|.....+....+
T Consensus       123 ~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~-~e~p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~~  201 (718)
T 3bg3_A          123 RTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFL-YECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFK  201 (718)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTS-CCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccC-CCCHHHHHHHHHHHcccchHHHHhcccccccccccCCcchHH
Confidence            4566666666666666666  9973    33    33 335556677766543 55666667764444555566666677


Q ss_pred             HHHHHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEE--Eecc-CCCCC--C--CHhHHHHHHHHHHHcCCCEEEEE
Q 015310           90 ALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFI--VSCN-LDCET--P--SEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        90 ll~~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI--~S~H-~f~~t--p--~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      .++.+.+.|++.|-|=..... +.++..+ .+++.+..+.  +||- ||...  +  +.+.+.++++++.+.|||++-|+
T Consensus       202 ~i~~a~~~Gvd~irIf~s~n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~  281 (718)
T 3bg3_A          202 FCEVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIK  281 (718)
T ss_dssp             HHHHHHHHTCCEEEEECSSCCHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHhcCcCEEEEEecHHHHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence            889999999998877554432 1122222 3344454443  4543 12221  1  45789999999999999999888


Q ss_pred             eecC--CHhHHHHHHHHhcc-C-CCCEEEEE---cCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          161 FSVN--DITEIARIFQLLSH-C-QVPIIAYS---VGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       161 ~~~~--~~~D~~~ll~~~~~-~-~~p~i~~~---MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      =|.-  ++.++.++.+.+.+ . +.|+ .+-   .--++..+=+..-.-|....=+++.. +-..||.+++++...++.
T Consensus       282 DT~G~~~P~~v~~lV~~lk~~~p~~~I-~~H~Hnd~GlAvANslaAveAGa~~VD~ti~GlGertGN~~lE~vv~~L~~  359 (718)
T 3bg3_A          282 DMAGLLKPTACTMLVSSLRDRFPDLPL-HIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVACTRG  359 (718)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHHSTTCCE-EEECCCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSCCBHHHHHHHHTT
T ss_pred             CcCCCcCHHHHHHHHHHHHHhCCCCeE-EEEECCCccHHHHHHHHHHHhCCCEEEecCcccccccCchhHHHHHHHHHh
Confidence            5544  57788777776543 2 3443 321   22223333333333343333333322 234677777777666554

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=87.22  E-value=3.4  Score=38.46  Aligned_cols=151  Identities=15%  Similarity=0.125  Sum_probs=86.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCC-CCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKW-AGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~-eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +.+++.+.++++.+.|+|.|=+-..         .+.... ..+.++|+.+=+.. -.|.. .++ ....-.+.+++.|+
T Consensus        39 ~~~di~~~~~~a~~~~~~av~v~~~---------~v~~~~-~~~~~liv~~~~~~~~~g~~-~~~-~~~~~ve~Ai~~Ga  106 (263)
T 1w8s_A           39 DSADPEYILRLARDAGFDGVVFQRG---------IAEKYY-DGSVPLILKLNGKTTLYNGE-PVS-VANCSVEEAVSLGA  106 (263)
T ss_dssp             GGGCHHHHHHHHHHHTCSEEEECHH---------HHHHHC-CSSSCEEEECEECCTTCCSS-CCC-EESSCHHHHHHTTC
T ss_pred             chhhHHHHHHHHHhhCCCEEEECHH---------HHHHhh-cCCCcEEEEEeCCCCcCCCC-ccc-hHHHHHHHHHHCCC
Confidence            5677777778888889998833211         233322 34678777653221 11221 122 33344678899999


Q ss_pred             cEEEEeccCcc----ch---HHHHH-hccCCCcEEEEeccC----CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHh
Q 015310          100 DYVDFELKVAS----NI---LGKQY-SSHQSGTRFIVSCNL----DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT  167 (409)
Q Consensus       100 dyvDiEl~~~~----~~---~~~l~-~~~~~~~kiI~S~H~----f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~  167 (409)
                      +.||+=.+...    +.   .+++. ..++.+.++|+-.|.    +..-.+.+++....+.+.+.|||++|.-+ |.+.+
T Consensus       107 ~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~~-~~~~e  185 (263)
T 1w8s_A          107 SAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIKY-TGDPK  185 (263)
T ss_dssp             SEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEEC-CSSHH
T ss_pred             CEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEcC-CCCHH
Confidence            99998553321    11   22333 234457777776442    10001345666667888899999999995 55666


Q ss_pred             HHHHHHHHhccCCC-CEEEEE
Q 015310          168 EIARIFQLLSHCQV-PIIAYS  187 (409)
Q Consensus       168 D~~~ll~~~~~~~~-p~i~~~  187 (409)
                      ++..+.+..   +. |+++.+
T Consensus       186 ~~~~~~~~~---~~~pV~asG  203 (263)
T 1w8s_A          186 TFSWAVKVA---GKVPVLMSG  203 (263)
T ss_dssp             HHHHHHHHT---TTSCEEEEC
T ss_pred             HHHHHHHhC---CCCeEEEEe
Confidence            665554433   44 766554

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=87.19  E-value=7.8  Score=36.30  Aligned_cols=160  Identities=15%  Similarity=0.190  Sum_probs=95.8

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCC----CCCCChhHHHHHH---hc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCI----NNFQPGKDLEIIL---TK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l----~~~~~~~~l~~l~---~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      +.+++++.+++..+.|||+|.+=--.-    ...+..+++.++.   +. ....+.+.+=|            .+-+..+
T Consensus        28 ~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~~~v~iSIDT------------~~~~Va~   95 (270)
T 4hb7_A           28 NVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDT------------FRSEVAE   95 (270)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEEC------------SCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCchHHHHHHHHHHHHHhhcCCCeEEEEC------------CCHHHHH
Confidence            457788889999999999997743221    1122344555543   11 12233344432            3456788


Q ss_pred             HHHHcCCcEEE-Ee-ccCccchHHHHHhccCCCcEEEEeccCCCCCCCHh--------HHHHHHHHHHHcCCCEEEEEee
Q 015310           93 LAEDLGADYVD-FE-LKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEE--------DLGYLVSRMQATGADIIKLVFS  162 (409)
Q Consensus        93 ~~~~~g~dyvD-iE-l~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~--------~l~~~~~~~~~~gaDivKia~~  162 (409)
                      ++++.|+++|- |- ...+++.++ +.  .+.+..+|+-|  ..++|..+        ++.+.++.+.+.|.+-=+|..=
T Consensus        96 ~al~aGa~iINDVs~g~~d~~m~~-~v--a~~~~~~vlMH--~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilD  170 (270)
T 4hb7_A           96 ACLKLGVDMINDQWAGLYDHRMFQ-IV--AKYDAEIILMH--NGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLD  170 (270)
T ss_dssp             HHHHHTCCEEEETTTTSSCTHHHH-HH--HHTTCEEEEEC--CCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             HHHHhccceeccccccccchhHHH-HH--HHcCCCeEEec--cccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEe
Confidence            99999999874 43 233344433 32  23578888874  24566432        2455667788888543356654


Q ss_pred             -----cCCHhHHHHHHHHhcc---CCCCEEEEEcCccchhhhhh
Q 015310          163 -----VNDITEIARIFQLLSH---CQVPIIAYSVGERGLVSQLL  198 (409)
Q Consensus       163 -----~~~~~D~~~ll~~~~~---~~~p~i~~~MG~~G~~SRi~  198 (409)
                           .++.++++.|++-+..   .+.|+ .++......+..++
T Consensus       171 PGiGFgKt~~~N~~ll~~l~~~~~lg~Pv-LvG~SRKsfig~~l  213 (270)
T 4hb7_A          171 PGIGFAKTRNEEAEVMARLDELVATEYPV-LLATSRKRFTKEMM  213 (270)
T ss_dssp             CCTTSSCCHHHHHHHHTCHHHHHTTCSCB-EECCTTSHHHHHHH
T ss_pred             CCCCcccccccHHHHHhhHHHHhcCCCCE-EEEecHHHHHHHHh
Confidence                 5789999998866543   36774 55666666555555

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=87.18  E-value=0.48  Score=45.73  Aligned_cols=34  Identities=21%  Similarity=0.115  Sum_probs=30.7

Q ss_pred             CEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          369 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       369 ~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      +++||.|+ |+.|++++..|.+.|.+|++++|+.+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCcc
Confidence            68999995 88999999999999999999999754

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=87.17  E-value=0.56  Score=49.69  Aligned_cols=33  Identities=21%  Similarity=0.395  Sum_probs=30.7

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|||+|.+|.++|.+|++.|++|.|+.++.
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            479999999999999999999999999999874

>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4

Probab=87.17  E-value=4.3  Score=37.73  Aligned_cols=56  Identities=18%  Similarity=0.103  Sum_probs=32.6

Q ss_pred             eeEEEeec-c---CCHHHHHHHHHHHHhcCCCEEEEEecCCC----CCCChhHHHHHHhcCCCcEEE
Q 015310           11 TMICAPLM-A---QSVEQVLSNMYQAKAEGADVVEIRLDCIN----NFQPGKDLEIILTKKPLPVLI   69 (409)
Q Consensus        11 ~~icv~l~-~---~~~~e~~~~~~~~~~~~aD~vElRlD~l~----~~~~~~~l~~l~~~~~~PiI~   69 (409)
                      .+|.+... .   .+.++.+   +.+.+.|.|.||++.+.+.    .....+++++.++..++.+..
T Consensus        23 ~klgi~~~~~~~~~~~~~~l---~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~   86 (296)
T 2g0w_A           23 CPITISSYTLGTEVSFPKRV---KVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTE   86 (296)
T ss_dssp             CCEEECGGGGTTTSCHHHHH---HHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEE
T ss_pred             CCceeechhcCCCCCHHHHH---HHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHHcCCceEe
Confidence            44565432 2   3455555   4555679999999986321    112234566666667776654

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=87.11  E-value=0.46  Score=44.54  Aligned_cols=35  Identities=11%  Similarity=0.133  Sum_probs=32.0

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..+|+++|+|+|-+|--.+..|.++|.+|+|+.|.
T Consensus       143 ~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~  177 (312)
T 4gcm_A          143 FKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRR  177 (312)
T ss_dssp             GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecc
Confidence            45789999999999999999999999999999875

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=87.07  E-value=8.6  Score=37.30  Aligned_cols=86  Identities=20%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCCC-EEEEEecCCC-----CC-CChhHHHHH----HhcCCCcEEEEeccCCCC
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGAD-VVEIRLDCIN-----NF-QPGKDLEII----LTKKPLPVLIVYRPKWAG   77 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~aD-~vElRlD~l~-----~~-~~~~~l~~l----~~~~~~PiI~T~R~~~eG   77 (409)
                      ..| +.+.|.+.+.+|..+-++.+.+.++| .+|+=+=+=.     .+ .+.+.+.++    ++..++|+++-+|+.   
T Consensus       128 ~~p-vivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~---  203 (345)
T 3oix_A          128 SKN-HFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPY---  203 (345)
T ss_dssp             CCC-CEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC---
T ss_pred             CCC-EEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCC---
Confidence            345 56899999999999988887666766 9999875310     11 111234433    344589999999863   


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCcEE
Q 015310           78 GLYEGDEHKRLEALHLAEDLGADYV  102 (409)
Q Consensus        78 G~~~~~~~~~~~ll~~~~~~g~dyv  102 (409)
                          .+.++..++++.+-..++++|
T Consensus       204 ----~~~~~~a~~~~~aga~~i~~i  224 (345)
T 3oix_A          204 ----FDIVHFDQAAAIFNXYPLTFV  224 (345)
T ss_dssp             ----CCHHHHHHHHHHHTTSCCSEE
T ss_pred             ----CCHHHHHHHHHHhCCCceEEE
Confidence                256666666666665556543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=87.06  E-value=0.52  Score=47.66  Aligned_cols=32  Identities=28%  Similarity=0.243  Sum_probs=30.1

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..++|||+|.+|.++|..|++.|.+|+|+.++
T Consensus        27 ~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~   58 (484)
T 3o0h_A           27 FDLFVIGSGSGGVRAARLAGALGKRVAIAEEY   58 (484)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC
Confidence            47999999999999999999999999999984

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=87.04  E-value=4.1  Score=39.39  Aligned_cols=87  Identities=20%  Similarity=0.276  Sum_probs=55.0

Q ss_pred             eeccCCHHHH----HHHHHHHHhcCCCEEEEEecC-------CCC---C-CC-------------hhHHHHHHhcCCCcE
Q 015310           16 PLMAQSVEQV----LSNMYQAKAEGADVVEIRLDC-------INN---F-QP-------------GKDLEIILTKKPLPV   67 (409)
Q Consensus        16 ~l~~~~~~e~----~~~~~~~~~~~aD~vElRlD~-------l~~---~-~~-------------~~~l~~l~~~~~~Pi   67 (409)
                      .++..+++++    .+.++++.+.|.|.||+-.-+       |..   . .+             .+.++.+++..+.|+
T Consensus       133 ~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv  212 (340)
T 3gr7_A          133 EMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPL  212 (340)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCE
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCce
Confidence            3444444443    444556677899999998764       111   1 11             133344555568888


Q ss_pred             EEEeccCC--CCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           68 LIVYRPKW--AGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        68 I~T~R~~~--eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      .+-++...  +||.   +.++..++.+.+.+.|+|||+|-
T Consensus       213 ~vRls~~~~~~~g~---~~~~~~~la~~L~~~Gvd~i~vs  249 (340)
T 3gr7_A          213 FVRISASDYHPDGL---TAKDYVPYAKRMKEQGVDLVDVS  249 (340)
T ss_dssp             EEEEESCCCSTTSC---CGGGHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEeccccccCCCC---CHHHHHHHHHHHHHcCCCEEEEe
Confidence            87777531  2342   45678889999999999999984

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=87.03  E-value=0.45  Score=46.63  Aligned_cols=41  Identities=24%  Similarity=0.221  Sum_probs=35.4

Q ss_pred             CCCEEEEE--echhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLA--GAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvl--GaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|.++||+  |+|++|.+++..+...|++|+++.++.+|.+.+
T Consensus       170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~  212 (379)
T 3iup_A          170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLL  212 (379)
T ss_dssp             TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            36789999  789999999998999999999999998886654

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=86.92  E-value=0.35  Score=50.21  Aligned_cols=33  Identities=15%  Similarity=0.132  Sum_probs=30.7

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +.++|+|+|.+|.++|+.|++.|.+|+|+.|..
T Consensus       108 ~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~  140 (549)
T 3nlc_A          108 ERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK  140 (549)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence            579999999999999999999999999999873

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=86.90  E-value=0.5  Score=48.33  Aligned_cols=38  Identities=21%  Similarity=0.136  Sum_probs=33.4

Q ss_pred             CCC-CEEEEEechhHHHHHHHHHHhC------CCeEEEEeCChHH
Q 015310          366 LAG-RMFVLAGAGGAGRALAFGAKSR------GARVVIFDIDFEQ  403 (409)
Q Consensus       366 ~~~-~~vlvlGaGGaarai~~aL~~~------G~~i~v~nR~~~k  403 (409)
                      ++| +++.|||.|-+|.+++..|.+.      |.+|+|.+|+.++
T Consensus        51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sk   95 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSK   95 (525)
T ss_dssp             TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCS
T ss_pred             hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchh
Confidence            678 9999999999999999999998      8888888876443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=86.88  E-value=0.66  Score=49.93  Aligned_cols=38  Identities=26%  Similarity=0.243  Sum_probs=34.6

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      =++|.|||||-+|+.|++.++..|++|++++++++..+
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~  353 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLD  353 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHH
T ss_pred             ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhh
Confidence            36899999999999999999999999999999977654

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=86.69  E-value=2.2  Score=39.58  Aligned_cols=149  Identities=17%  Similarity=0.178  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHh--cCCCcEEEEeccCCCCCCCC-CCHHHHHHHHHHHHHcC
Q 015310           22 VEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILT--KKPLPVLIVYRPKWAGGLYE-GDEHKRLEALHLAEDLG   98 (409)
Q Consensus        22 ~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~--~~~~PiI~T~R~~~eGG~~~-~~~~~~~~ll~~~~~~g   98 (409)
                      .+++...++.+.+.|++.++.  +.       ..+....+  ..+.|+++.+.....-  ++ ...+...+..+.+++.|
T Consensus        44 ~~~~~~~~~~~~~~g~~~i~~--~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~--~~d~~~~~~~~~v~~a~~~G  112 (273)
T 2qjg_A           44 LIDIRKTVNDVAEGGANAVLL--HK-------GIVRHGHRGYGKDVGLIIHLSGGTAI--SPNPLKKVIVTTVEEAIRMG  112 (273)
T ss_dssp             SSSHHHHHHHHHHHTCSEEEE--CH-------HHHHSCCCSSSCCCEEEEECEECCTT--SSSTTCCEECSCHHHHHHTT
T ss_pred             hhhHHHHHHHHHhcCCCEEEe--CH-------HHHHHHHHhhcCCCCEEEEEcCCCcC--CCCcccchHHHHHHHHHHcC
Confidence            345555566667789999974  11       11211111  1367888887642210  10 11111233456788899


Q ss_pred             CcEEEEeccCcc-------chHHHHH-hccCCCcEEEEec-----cCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015310           99 ADYVDFELKVAS-------NILGKQY-SSHQSGTRFIVSC-----NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND  165 (409)
Q Consensus        99 ~dyvDiEl~~~~-------~~~~~l~-~~~~~~~kiI~S~-----H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~  165 (409)
                      ++.||+-+....       +..+++. ..++.+.++|+-.     |- ..--+.+++.+..+.+.+.|+|++|+-. +. 
T Consensus       113 a~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l-~~~~~~~~~~~~a~~a~~~Gad~i~~~~-~~-  189 (273)
T 2qjg_A          113 ADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHI-QNERDPELVAHAARLGAELGADIVKTSY-TG-  189 (273)
T ss_dssp             CSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTC-SCTTCHHHHHHHHHHHHHTTCSEEEECC-CS-
T ss_pred             CCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCccc-CCCCCHhHHHHHHHHHHHcCCCEEEECC-CC-
Confidence            999987653321       1233344 2344567776632     21 1011234555666888899999999873 33 


Q ss_pred             HhHHHHHHHHhccCCCCEEEE
Q 015310          166 ITEIARIFQLLSHCQVPIIAY  186 (409)
Q Consensus       166 ~~D~~~ll~~~~~~~~p~i~~  186 (409)
                        |...+-++....+.|+++.
T Consensus       190 --~~~~l~~i~~~~~ipvva~  208 (273)
T 2qjg_A          190 --DIDSFRDVVKGCPAPVVVA  208 (273)
T ss_dssp             --SHHHHHHHHHHCSSCEEEE
T ss_pred             --CHHHHHHHHHhCCCCEEEE
Confidence              3333333333446787764

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=86.67  E-value=0.42  Score=53.16  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=32.3

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++.+|+|+|+||.|..++..|...|+ +|+|++.+
T Consensus        25 L~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D   60 (1015)
T 3cmm_A           25 MQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPE   60 (1015)
T ss_dssp             HTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred             HhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCC
Confidence            457899999999999999999999999 99999865

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=86.52  E-value=0.56  Score=47.20  Aligned_cols=32  Identities=13%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .+|+|||+|-+|.++++.|.+.|.+|+|+.++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~   71 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEAR   71 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCC
Confidence            58999999999999999999999999999765

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=86.48  E-value=0.54  Score=47.36  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=31.1

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ...++|||+|.+|.+++..|++.|.+|+|+.|+.
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~~   53 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESHK   53 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            3579999999999999999999999999999874

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=86.45  E-value=0.7  Score=46.71  Aligned_cols=40  Identities=25%  Similarity=0.268  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhC---CCeEEEEeCChHHH
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSR---GARVVIFDIDFEQS  404 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~---G~~i~v~nR~~~ka  404 (409)
                      ..++++|+|.|+ |+.|+.++..|.+.   |.+|+++.|+.+..
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~  113 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDE  113 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcH
Confidence            356899999996 77999999999998   88999999986543

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=86.35  E-value=0.67  Score=49.03  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .+++++|||+|-+|.++++.|.+.|.+|+|+.+.
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~  139 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR  139 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            4679999999999999999999999999999875

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=86.30  E-value=0.92  Score=44.18  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=31.2

Q ss_pred             CCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          367 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      .|++++|.| +||.|.+++..+...|++|+++.+ .++.+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~~  221 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDASE  221 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHHH
Confidence            578999999 699999999999999998877774 34433

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=86.28  E-value=0.63  Score=49.17  Aligned_cols=33  Identities=30%  Similarity=0.426  Sum_probs=30.6

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|||+|.+|.++|.+|++.|++|.|+.++.
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~   60 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA   60 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc
Confidence            469999999999999999999999999999874

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=86.21  E-value=0.62  Score=49.26  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=30.8

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..|+|||+|.+|.++|.+|++.|.+|.|+.+..
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   54 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDL   54 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecc
Confidence            479999999999999999999999999999874

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=86.20  E-value=0.49  Score=47.44  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=31.4

Q ss_pred             CCCCEEEEEec-hhHHHH--HHHHHHhCCCeEEEEeCChH
Q 015310          366 LAGRMFVLAGA-GGAGRA--LAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaara--i~~aL~~~G~~i~v~nR~~~  402 (409)
                      ..+|++||.|+ +|.|++  ++.++.+.|++|++++|+.+
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~   97 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETG   97 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcc
Confidence            56899999995 789999  88888888999999998643

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=86.10  E-value=13  Score=35.49  Aligned_cols=213  Identities=11%  Similarity=0.087  Sum_probs=112.1

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHHhcCC-CEEEEEecCCCCCCC---hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCH
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAKAEGA-DVVEIRLDCINNFQP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDE   84 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~~~~a-D~vElRlD~l~~~~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~   84 (409)
                      ..|.|+.|..+-+..++...+.   ..|+ ++++.+.     .++   .+.+..+++..+.|+.+.+-..      ..  
T Consensus        12 ~~Pii~apM~g~s~~~la~av~---~aG~lG~i~~~~-----~~~~~~~~~i~~i~~~~~~p~gvnl~~~------~~--   75 (332)
T 2z6i_A           12 DYPIFQGGMAWVADGDLAGAVS---KAGGLGIIGGGN-----APKEVVKANIDKIKSLTDKPFGVNIMLL------SP--   75 (332)
T ss_dssp             SSSEEECCCTTTCCHHHHHHHH---HHTSBEEEECTT-----CCHHHHHHHHHHHHHHCCSCEEEEECTT------ST--
T ss_pred             CCCEEeCCCCCCCcHHHHHHHH---hCCCcEEeCCCC-----CCHHHHHHHHHHHHHhcCCCEEEEecCC------CC--
Confidence            4578888888766566655443   3464 7887541     122   1233444444567887665421      11  


Q ss_pred             HHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec-
Q 015310           85 HKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV-  163 (409)
Q Consensus        85 ~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~-  163 (409)
                       .+.+.++.+.+.|+|.|.+=...+.+.++.+..   .+.+++.+.+.      .+    ..+.+.+.|+|.+.+-... 
T Consensus        76 -~~~~~~~~a~~~g~d~V~~~~g~p~~~i~~l~~---~g~~v~~~v~~------~~----~a~~~~~~GaD~i~v~g~~~  141 (332)
T 2z6i_A           76 -FVEDIVDLVIEEGVKVVTTGAGNPSKYMERFHE---AGIIVIPVVPS------VA----LAKRMEKIGADAVIAEGMEA  141 (332)
T ss_dssp             -THHHHHHHHHHTTCSEEEECSSCGGGTHHHHHH---TTCEEEEEESS------HH----HHHHHHHTTCSCEEEECTTS
T ss_pred             -CHHHHHHHHHHCCCCEEEECCCChHHHHHHHHH---cCCeEEEEeCC------HH----HHHHHHHcCCCEEEEECCCC
Confidence             244566778889999999877777666666543   47888877632      22    3456677899999985321 


Q ss_pred             ----CCHhHHHHHHH-HhccCCCCEEEEE-cCccchhhhhhcCCCCCccccccCCCC--CCCCCCCHHHHHhhhhhcccc
Q 015310          164 ----NDITEIARIFQ-LLSHCQVPIIAYS-VGERGLVSQLLSPKFNGALVYGSLKGT--PVLGLPTVESLRQTYKVEHIN  235 (409)
Q Consensus       164 ----~~~~D~~~ll~-~~~~~~~p~i~~~-MG~~G~~SRi~~~~~Gs~ltf~~l~~~--sAPGQ~~~~~l~~~~~~~~i~  235 (409)
                          -...+. .++. +....++|+|+-+ .+..-.+-.++.  .|....  .++..  ..|.-...+.+++.+.-.. .
T Consensus       142 GG~~g~~~~~-~ll~~i~~~~~iPViaaGGI~~~~~~~~al~--~GAdgV--~vGs~~l~~~e~~~~~~~k~~~~~~~-~  215 (332)
T 2z6i_A          142 GGHIGKLTTM-TLVRQVATAISIPVIAAGGIADGEGAAAGFM--LGAEAV--QVGTRFVVAKESNAHPNYKEKILKAR-D  215 (332)
T ss_dssp             SEECCSSCHH-HHHHHHHHHCSSCEEEESSCCSHHHHHHHHH--TTCSEE--EECHHHHTBTTCCSCHHHHHHHHHCC-T
T ss_pred             CCCCCCccHH-HHHHHHHHhcCCCEEEECCCCCHHHHHHHHH--cCCCEE--EecHHHhcCccccccHHHHHHHHhCC-C
Confidence                112233 3333 3334478987642 111112334333  243221  22221  2222223345555442211 1


Q ss_pred             ccceEE-eeeccCCcccCCHHhH
Q 015310          236 ADTKVF-GLISKPVGHSKGPILH  257 (409)
Q Consensus       236 ~~~~~~-~viG~pi~hS~SP~ih  257 (409)
                      .++... ...|.|+.-.+.|.+.
T Consensus       216 ~d~~~~~~~~g~~~r~l~n~~~~  238 (332)
T 2z6i_A          216 IDTTISAQHFGHAVRAIKNQLTR  238 (332)
T ss_dssp             TCEEEESGGGTCCEEEECSHHHH
T ss_pred             cCEEEECCcCCCcEEEEeCHHHH
Confidence            122222 2457887777777753

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*

Probab=86.04  E-value=1.3  Score=42.21  Aligned_cols=140  Identities=14%  Similarity=0.170  Sum_probs=87.0

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCChhHHHHHH---h---cCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLEIIL---T---KKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~~~~~~l~~l~---~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (409)
                      +.+++++.+++..+.|||+|.+=...-..    .+..+++.++.   +   ..+.||-+-              ..+-+.
T Consensus        44 ~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~v~~~eE~~Rv~pvi~~l~~~~vpiSID--------------T~~~~V  109 (294)
T 2y5s_A           44 ARDDALRRAERMIAEGADLLDIGGESTRPGAPPVPLDEELARVIPLVEALRPLNVPLSID--------------TYKPAV  109 (294)
T ss_dssp             CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHGGGCSCEEEE--------------CCCHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHhhCCCeEEEE--------------CCCHHH
Confidence            46788888999999999999888865432    23334454432   1   115554321              133467


Q ss_pred             HHHHHHcCCcEE-EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCC----------------HhHHHHHHHHHHHcC
Q 015310           91 LHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPS----------------EEDLGYLVSRMQATG  153 (409)
Q Consensus        91 l~~~~~~g~dyv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~----------------~~~l~~~~~~~~~~g  153 (409)
                      .+++++.|+++| ||-....++.++ +  +.+.+..+|+.+-  .++|.                .+.+.+.++.+.+.|
T Consensus       110 a~aAl~aGa~iINdVsg~~d~~m~~-~--~a~~~~~vVlmh~--~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~G  184 (294)
T 2y5s_A          110 MRAALAAGADLINDIWGFRQPGAID-A--VRDGNSGLCAMHM--LGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAG  184 (294)
T ss_dssp             HHHHHHHTCSEEEETTTTCSTTHHH-H--HSSSSCEEEEECC--CEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCEEEECCCCCchHHHH-H--HHHhCCCEEEECC--CCCCccccccCCccccHHHHHHHHHHHHHHHHHHcC
Confidence            888999998887 665444333332 2  3457888888753  33332                234677788888888


Q ss_pred             CCEEEEEe-----ecCCH-hHHHHHHHHhccC
Q 015310          154 ADIIKLVF-----SVNDI-TEIARIFQLLSHC  179 (409)
Q Consensus       154 aDivKia~-----~~~~~-~D~~~ll~~~~~~  179 (409)
                      -+-=+|..     ..++. ++++.+++-+.+.
T Consensus       185 i~~~~IilDPG~Gf~kt~~~~n~~ll~~l~~l  216 (294)
T 2y5s_A          185 VAAERICVDPGFGFGKAVVDDNYALLAALPDT  216 (294)
T ss_dssp             CCGGGEEEECCTTSSSCTTHHHHHHHHTGGGG
T ss_pred             CChhhEEEeCCCcccccchHHHHHHHHHHHHH
Confidence            54113443     45677 8888888876543

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=85.96  E-value=0.47  Score=48.56  Aligned_cols=33  Identities=12%  Similarity=0.116  Sum_probs=30.2

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++|||||+|-+|-.++..|.+.+++|+|++++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~   74 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPR   74 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESS
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCC
Confidence            458999999999999999998888999999986

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=85.92  E-value=0.69  Score=48.93  Aligned_cols=33  Identities=39%  Similarity=0.657  Sum_probs=31.0

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++++|||+|.+|-+++..|.+.|.+|+|+++.
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~  405 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAH  405 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            578999999999999999999999999999986

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=85.89  E-value=6.8  Score=35.31  Aligned_cols=146  Identities=14%  Similarity=0.134  Sum_probs=75.8

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEec--CCC-CCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLD--CIN-NFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD--~l~-~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (409)
                      +..++.   +.+.+.|+|.+.++..  .+. .... +.++.+++..++|+++.      ||..  +++ +   .+.+++.
T Consensus        32 d~~~~a---~~~~~~Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~------ggi~--~~~-~---~~~~l~~   95 (244)
T 2y88_A           32 SAVDAA---LGWQRDGAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELS------GGIR--DDE-S---LAAALAT   95 (244)
T ss_dssp             EHHHHH---HHHHHTTCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEE------SSCC--SHH-H---HHHHHHT
T ss_pred             CHHHHH---HHHHHcCCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEE------CCCC--CHH-H---HHHHHHc
Confidence            444444   4555679999999852  122 2222 56777777789999983      4442  233 2   4556678


Q ss_pred             CCcEEEEeccCc--cchHHHHHhccCCCcEEEEecc-----------CCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310           98 GADYVDFELKVA--SNILGKQYSSHQSGTRFIVSCN-----------LDCETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus        98 g~dyvDiEl~~~--~~~~~~l~~~~~~~~kiI~S~H-----------~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                      |+|.|-+=....  .+.+.+++........+=++.+           .+....  ++..+.++++.+.|+|.+=  ++..
T Consensus        96 Gad~V~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~--~~~~e~~~~~~~~G~~~i~--~~~~  171 (244)
T 2y88_A           96 GCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDG--GDLWDVLERLDSEGCSRFV--VTDI  171 (244)
T ss_dssp             TCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEE--EEHHHHHHHHHHTTCCCEE--EEET
T ss_pred             CCCEEEECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCC--CCHHHHHHHHHhCCCCEEE--EEec
Confidence            999987754322  2234444321111111222322           211111  1456677778888988653  3332


Q ss_pred             CH------hHHHHHHHHhccCCCCEEEE
Q 015310          165 DI------TEIARIFQLLSHCQVPIIAY  186 (409)
Q Consensus       165 ~~------~D~~~ll~~~~~~~~p~i~~  186 (409)
                      +.      -|...+-++....+.|+|+.
T Consensus       172 ~~~~~~~g~~~~~~~~l~~~~~ipvia~  199 (244)
T 2y88_A          172 TKDGTLGGPNLDLLAGVADRTDAPVIAS  199 (244)
T ss_dssp             TTTTTTSCCCHHHHHHHHTTCSSCEEEE
T ss_pred             CCccccCCCCHHHHHHHHHhCCCCEEEE
Confidence            22      13333334444446777664

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=85.88  E-value=0.62  Score=47.60  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=33.1

Q ss_pred             CCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          368 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       368 ~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      +++|||.|+ |..|++++..|.+.|.+|+++.|+.+++
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~  184 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP  184 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc
Confidence            679999995 8899999999999999999999987654

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=85.85  E-value=0.64  Score=46.19  Aligned_cols=33  Identities=42%  Similarity=0.544  Sum_probs=30.2

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ...++|||+|-+|.++++.|.+.|.+|+|+.++
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~   61 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRR   61 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEecc
Confidence            457999999999999999999999999999875

>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*

Probab=85.82  E-value=25  Score=33.69  Aligned_cols=161  Identities=16%  Similarity=0.134  Sum_probs=101.0

Q ss_pred             CCCeeEEEeeccCCH--------------HHHHHHHHHHH-hcCCCEEEEEecCCCCC----CCh---hHHHHHHhcCCC
Q 015310            8 KNTTMICAPLMAQSV--------------EQVLSNMYQAK-AEGADVVEIRLDCINNF----QPG---KDLEIILTKKPL   65 (409)
Q Consensus         8 ~~~~~icv~l~~~~~--------------~e~~~~~~~~~-~~~aD~vElRlD~l~~~----~~~---~~l~~l~~~~~~   65 (409)
                      .|+|.|.+-|.....              +++.+.+++.. +.|||+|-++...-...    +..   +.++.+++..++
T Consensus        51 ~n~p~iam~V~D~~pe~~~~v~~~~~~~~~~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~vs~ee~~~~V~~v~~~~~v  130 (323)
T 4djd_D           51 VNRPVIGMEVQDIVPDWPDVLKDPFTDVINEPGRWAQKCVAEYGADLIYLKLDGADPEGANHSVDQCVATVKEVLQAVGV  130 (323)
T ss_dssp             CSCCEEEEEEESSCCSCCHHHHGGGTTTTTCHHHHHHHHHHTTCCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCCS
T ss_pred             CCCCeEEEEEecCCccchhhHHHHHHHHHHhHHHHHHHHHHHcCCCEEEEcCccCCCCCCCCCHHHHHHHHHHHHhhCCc
Confidence            478888887766332              34555566666 78999999998765432    111   223344455689


Q ss_pred             cEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCc----EEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhH
Q 015310           66 PVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGAD----YVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEED  141 (409)
Q Consensus        66 PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~d----yvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~  141 (409)
                      ||.+-       |  .+.+..+-+.++++++.|++    .=|+.....++... +  +.+.+..+|+.+-     .+.+.
T Consensus       131 PlsID-------g--~~~~T~~~eV~eaAleagag~~~lINsv~~~~~~~m~~-l--aa~~g~~vVlmh~-----~d~~~  193 (323)
T 4djd_D          131 PLVVV-------G--CGDVEKDHEVLEAVAEAAAGENLLLGNAEQENYKSLTA-A--CMVHKHNIIARSP-----LDINI  193 (323)
T ss_dssp             CEEEE-------C--CSCHHHHHHHHHHHHHHTTTSCCEEEEEBTTBCHHHHH-H--HHHHTCEEEEECS-----SCHHH
T ss_pred             eEEEE-------C--CCCCCCCHHHHHHHHHhcCCCCCeEEECCcccHHHHHH-H--HHHhCCeEEEEcc-----chHHH
Confidence            98764       1  24567888999999998854    34665543333322 2  2346778888641     13466


Q ss_pred             HHHHHHHHHHcCCCEEEEEe------ecCCHhHHHHHHHHhcc--------CCCCEEE
Q 015310          142 LGYLVSRMQATGADIIKLVF------SVNDITEIARIFQLLSH--------CQVPIIA  185 (409)
Q Consensus       142 l~~~~~~~~~~gaDivKia~------~~~~~~D~~~ll~~~~~--------~~~p~i~  185 (409)
                      +.++++.+.++|-+-=+|..      ..++.++++.+++.++.        .+.|++.
T Consensus       194 ~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~~al~~~~~lg~PvL~  251 (323)
T 4djd_D          194 CKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRLGALQGDKMLSMPVIC  251 (323)
T ss_dssp             HHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHHHHHHTCGGGCSCBEE
T ss_pred             HHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHHHhhcccccCCCCEEE
Confidence            78888889998863233443      23567888887766543        3778765

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=85.79  E-value=14  Score=34.73  Aligned_cols=194  Identities=14%  Similarity=0.107  Sum_probs=104.2

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCC------CChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNF------QPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~------~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (409)
                      +.++.++-++.+.+.|.|.||.=-  +...      .+.+++...++.. +.++.... .         .    .+-++.
T Consensus        25 ~~e~k~~i~~~L~~~Gv~~IE~g~--~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~-~---------~----~~~i~~   88 (298)
T 2cw6_A           25 STPVKIKLIDMLSEAGLSVIETTS--FVSPKWVPQMGDHTEVLKGIQKFPGINYPVLT-P---------N----LKGFEA   88 (298)
T ss_dssp             CHHHHHHHHHHHHHTTCSEECCEE--CCCTTTCGGGTTHHHHHHHSCCCTTCBCCEEC-C---------S----HHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcCEEEECC--CcCcccccccCCHHHHHHHHhhCCCCEEEEEc-C---------C----HHhHHH
Confidence            456677777777778999999863  2111      1112222211111 33322221 1         1    123678


Q ss_pred             HHHcCCcEEEEeccCccc---------------hHHHHH-hccCCCcEEE--Eecc----CCCCCCCHhHHHHHHHHHHH
Q 015310           94 AEDLGADYVDFELKVASN---------------ILGKQY-SSHQSGTRFI--VSCN----LDCETPSEEDLGYLVSRMQA  151 (409)
Q Consensus        94 ~~~~g~dyvDiEl~~~~~---------------~~~~l~-~~~~~~~kiI--~S~H----~f~~tp~~~~l~~~~~~~~~  151 (409)
                      +++.|++.|-|=....+.               ...+.+ .+++.+.++-  +|+.    +... -+.+++.++++.+.+
T Consensus        89 a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~  167 (298)
T 2cw6_A           89 AVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGK-ISPAKVAEVTKKFYS  167 (298)
T ss_dssp             HHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBS-CCHHHHHHHHHHHHH
T ss_pred             HHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCC-CCHHHHHHHHHHHHH
Confidence            888999999986554432               112222 3455666664  3322    1112 246789999999999


Q ss_pred             cCCCEEEEEeecC--CHhHHHHHHHHhccC--CCCEEEEEcCccch--hhhhhcCCCCCcccccc---CCC-CCC---CC
Q 015310          152 TGADIIKLVFSVN--DITEIARIFQLLSHC--QVPIIAYSVGERGL--VSQLLSPKFNGALVYGS---LKG-TPV---LG  218 (409)
Q Consensus       152 ~gaDivKia~~~~--~~~D~~~ll~~~~~~--~~p~i~~~MG~~G~--~SRi~~~~~Gs~ltf~~---l~~-~sA---PG  218 (409)
                      +|+|.+.++=+.-  ++.++.++++.+.+.  +.|+-.=+=-..|.  ..-+.+-..|....-++   +++ |.|   .|
T Consensus       168 ~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aG  247 (298)
T 2cw6_A          168 MGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASG  247 (298)
T ss_dssp             TTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCC
T ss_pred             cCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCcC
Confidence            9999999984433  588888887776432  23433222112222  11122222233222222   233 334   47


Q ss_pred             CCCHHHHHhhhhh
Q 015310          219 LPTVESLRQTYKV  231 (409)
Q Consensus       219 Q~~~~~l~~~~~~  231 (409)
                      +.+.+++...++.
T Consensus       248 N~~~E~lv~~l~~  260 (298)
T 2cw6_A          248 NLATEDLVYMLEG  260 (298)
T ss_dssp             BCBHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHh
Confidence            9999998887754

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=85.78  E-value=0.92  Score=45.81  Aligned_cols=53  Identities=19%  Similarity=0.272  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeE-EEEeCC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARV-VIFDID  400 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i-~v~nR~  400 (409)
                      ++|....++..+.+.         +.+++|++|+|-|.|-+|..++..|.++|++| .|.+.+
T Consensus       219 g~Gv~~~~~~~~~~~---------g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~  272 (456)
T 3r3j_A          219 GYGVVYFAENVLKDL---------NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSN  272 (456)
T ss_dssp             HHHHHHHHHHHHHTT---------TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSS
T ss_pred             chHHHHHHHHHHHHc---------CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            578888888776532         35789999999999999999999999999965 577753

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=85.73  E-value=0.8  Score=44.53  Aligned_cols=41  Identities=24%  Similarity=0.285  Sum_probs=33.6

Q ss_pred             CCCEEEEEe-chhHHHHHHHHHHhC-CCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAG-AGGAGRALAFGAKSR-GARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlG-aGGaarai~~aL~~~-G~~i~v~nR~~~ka~~l  407 (409)
                      .|+++||+| +|++|.+++..+..+ |++|+++.++.+|.+.+
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~  213 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWV  213 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHH
Confidence            578999999 899999888777764 67999999998776543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=85.71  E-value=0.55  Score=52.40  Aligned_cols=33  Identities=27%  Similarity=0.268  Sum_probs=31.1

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++++|||+|.+|.++|+.|.+.|. +|+|+.|.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~  220 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQ  220 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            6789999999999999999999999 79999986

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=85.71  E-value=22  Score=32.80  Aligned_cols=90  Identities=19%  Similarity=0.230  Sum_probs=53.4

Q ss_pred             CCeeEEEeecc--CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHHhc-CC
Q 015310            9 NTTMICAPLMA--QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTK-KP   64 (409)
Q Consensus         9 ~~~~icv~l~~--~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~~~-~~   64 (409)
                      +++.++..|+.  ++.++..+.++.+.+.|+|++|+=+-+.++..+.                     +.++.+++. .+
T Consensus        15 ~~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~   94 (268)
T 1qop_A           15 REGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPT   94 (268)
T ss_dssp             TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSS
T ss_pred             CCceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence            45556555554  4558888888888889999999977554332111                     235556666 68


Q ss_pred             CcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015310           65 LPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (409)
Q Consensus        65 ~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDi  104 (409)
                      +|+++-....   -.+...-   .+.++.+.+.|+|.|=+
T Consensus        95 ~Pv~lm~y~n---~v~~~g~---~~~~~~~~~aGadgii~  128 (268)
T 1qop_A           95 IPIGLLMYAN---LVFNNGI---DAFYARCEQVGVDSVLV  128 (268)
T ss_dssp             SCEEEEECHH---HHHTTCH---HHHHHHHHHHTCCEEEE
T ss_pred             CCEEEEEccc---HHHHhhH---HHHHHHHHHcCCCEEEE
Confidence            9987632110   0000111   34566777788885544

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=85.69  E-value=0.66  Score=44.70  Aligned_cols=39  Identities=31%  Similarity=0.288  Sum_probs=32.8

Q ss_pred             CEEEEE-echhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          369 RMFVLA-GAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       369 ~~vlvl-GaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ++++|. |+||.|.+++..+...|++|+++.|+.+|.+.+
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~  205 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALL  205 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            567666 789999999999999999999999988876543

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=85.63  E-value=0.74  Score=47.52  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ....+|+|+|||+|-+|--++.+|.+.|.+|+++.|++.
T Consensus       174 ~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          174 KSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             cccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            346789999999999999999999999999999999754

>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}

Probab=85.48  E-value=13  Score=34.14  Aligned_cols=43  Identities=23%  Similarity=0.246  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcE
Q 015310           24 QVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPV   67 (409)
Q Consensus        24 e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~Pi   67 (409)
                      ++...++.+.+.|.|.||+..+...+ ...++++++++..++.+
T Consensus        42 ~~~~~l~~~~~~G~~~vEl~~~~~~~-~~~~~~~~~l~~~gl~~   84 (290)
T 2zvr_A           42 DLRKGMELAKRVGYQAVEIAVRDPSI-VDWNEVKILSEELNLPI   84 (290)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECSCGGG-SCHHHHHHHHHHHTCCE
T ss_pred             CHHHHHHHHHHhCCCEEEEcCCCcch-hhHHHHHHHHHHcCCeE
Confidence            34444555566799999999874322 22345666666667776

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*

Probab=85.48  E-value=11  Score=35.12  Aligned_cols=118  Identities=11%  Similarity=0.101  Sum_probs=69.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHH---h-cCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHH
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIIL---T-KKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAE   95 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~---~-~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~   95 (409)
                      .+.+++++.+++..+.|||+|-+-...- ..+..+++.++.   + ..+.|+.+=  |            .+-+.+++++
T Consensus        22 ~~~~~a~~~a~~~v~~GAdiIDIg~g~~-~v~~~ee~~rvv~~i~~~~~~pisID--T------------~~~~v~~aAl   86 (262)
T 1f6y_A           22 RDPAPVQEWARRQEEGGARALDLNVGPA-VQDKVSAMEWLVEVTQEVSNLTLCLD--S------------TNIKAIEAGL   86 (262)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEBCC-----CHHHHHHHHHHHHHTTCCSEEEEE--C------------SCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCcEEEECCCCC-CCChHHHHHHHHHHHHHhCCCeEEEe--C------------CCHHHHHHHH
Confidence            4678888888888899999999887432 223344555543   2 236665432  1            2345778888


Q ss_pred             Hc--CCcEE-EEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCH-----hHHHHHHHHHHHcCC
Q 015310           96 DL--GADYV-DFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSE-----EDLGYLVSRMQATGA  154 (409)
Q Consensus        96 ~~--g~dyv-DiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~-----~~l~~~~~~~~~~ga  154 (409)
                      +.  |+++| ||-...  +-++++. ...+.+..+|+.+-+-+++|..     +.+.++++.+.+.|-
T Consensus        87 ~a~~Ga~iINdvs~~~--d~~~~~~~~~a~~~~~vvlmh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi  152 (262)
T 1f6y_A           87 KKCKNRAMINSTNAER--EKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFGL  152 (262)
T ss_dssp             HHCSSCEEEEEECSCH--HHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhCCCCCEEEECCCCc--ccHHHHHHHHHHhCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence            88  88876 575442  2111222 2234677888886555667752     223445555555553

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=85.44  E-value=0.66  Score=47.99  Aligned_cols=38  Identities=13%  Similarity=0.226  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .++.+|+|+|||+|-+|--++.+|++.|.+|+++.|++
T Consensus       187 ~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~  224 (549)
T 4ap3_A          187 VDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSA  224 (549)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCC
Confidence            34678999999999999999999999999999999985

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=85.36  E-value=2.7  Score=41.17  Aligned_cols=84  Identities=13%  Similarity=0.122  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecC-------CCCC----CC-------------hhHHHHHHhcCC-CcEEEEeccC--C
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDC-------INNF----QP-------------GKDLEIILTKKP-LPVLIVYRPK--W   75 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~-------l~~~----~~-------------~~~l~~l~~~~~-~PiI~T~R~~--~   75 (409)
                      +++.+.++++.+.|+|.||+-.-+       +...    .+             .+.++.+++... .|+.+-++..  .
T Consensus       161 ~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~  240 (364)
T 1vyr_A          161 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF  240 (364)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcccccc
Confidence            345555666678899999997642       1110    01             123445555442 2877766654  2


Q ss_pred             CCC-CCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310           76 AGG-LYEGDEHKRLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        76 eGG-~~~~~~~~~~~ll~~~~~~g~dyvDiEl  106 (409)
                      +|. ....+.++..++.+.+.+.|+|||++-.
T Consensus       241 ~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~  272 (364)
T 1vyr_A          241 QNVDNGPNEEADALYLIEELAKRGIAYLHMSE  272 (364)
T ss_dssp             TTBCCCTTHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence            220 1122456788889999999999999854

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=85.35  E-value=1.7  Score=51.13  Aligned_cols=42  Identities=26%  Similarity=0.356  Sum_probs=34.8

Q ss_pred             CCCCCCEEEEEec-hh-HHHHHHHHHHhCCCeEEEEe-CChHHHH
Q 015310          364 SPLAGRMFVLAGA-GG-AGRALAFGAKSRGARVVIFD-IDFEQSL  405 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GG-aarai~~aL~~~G~~i~v~n-R~~~ka~  405 (409)
                      ..++||++||-|+ || .|++++..|.+.|++|++++ |+.++.+
T Consensus       648 m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~  692 (1878)
T 2uv9_A          648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVT  692 (1878)
T ss_dssp             BCCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHH
Confidence            4578999999996 56 99999999999999998884 7665543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=85.31  E-value=0.71  Score=47.74  Aligned_cols=38  Identities=16%  Similarity=0.241  Sum_probs=34.3

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .++.+|+|+|||+|-+|--++.+|++.|.+|+|+.|++
T Consensus       181 ~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~  218 (545)
T 3uox_A          181 VDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTP  218 (545)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSC
T ss_pred             cccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCC
Confidence            34578999999999999999999999988999999985

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=85.27  E-value=18  Score=33.76  Aligned_cols=107  Identities=15%  Similarity=0.175  Sum_probs=66.7

Q ss_pred             HHHHHHhcCCCEEEEEec--CCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEe
Q 015310           28 NMYQAKAEGADVVEIRLD--CINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFE  105 (409)
Q Consensus        28 ~~~~~~~~~aD~vElRlD--~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiE  105 (409)
                      .++.+...||+++=+--|  +|.+  ..+.+..+++..++|+|   |.  +   |-.++.   + +..+...|+|.|=+-
T Consensus        84 ~A~~y~~~GA~~IsVltd~~~f~G--s~~~L~~ir~~v~lPVl---~K--d---fi~d~~---q-i~ea~~~GAD~VlLi  149 (272)
T 3tsm_A           84 LAKAYEEGGAACLSVLTDTPSFQG--APEFLTAARQACSLPAL---RK--D---FLFDPY---Q-VYEARSWGADCILII  149 (272)
T ss_dssp             HHHHHHHTTCSEEEEECCSTTTCC--CHHHHHHHHHTSSSCEE---EE--S---CCCSTH---H-HHHHHHTTCSEEEEE
T ss_pred             HHHHHHHCCCCEEEEeccccccCC--CHHHHHHHHHhcCCCEE---EC--C---ccCCHH---H-HHHHHHcCCCEEEEc
Confidence            344555679999954333  3332  23567778777899998   22  2   222322   2 345678899997776


Q ss_pred             ccCc-cchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEE
Q 015310          106 LKVA-SNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK  158 (409)
Q Consensus       106 l~~~-~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivK  158 (409)
                      ...- .+.+++++ .++.-|..+++..|+      .+|    ++++.++|+|++=
T Consensus       150 ~a~L~~~~l~~l~~~a~~lGl~~lvevh~------~eE----l~~A~~~ga~iIG  194 (272)
T 3tsm_A          150 MASVDDDLAKELEDTAFALGMDALIEVHD------EAE----MERALKLSSRLLG  194 (272)
T ss_dssp             TTTSCHHHHHHHHHHHHHTTCEEEEEECS------HHH----HHHHTTSCCSEEE
T ss_pred             ccccCHHHHHHHHHHHHHcCCeEEEEeCC------HHH----HHHHHhcCCCEEE
Confidence            5443 23455555 456678899999996      234    3556678999883

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}

Probab=85.19  E-value=10  Score=36.31  Aligned_cols=196  Identities=12%  Similarity=0.044  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEE-eccCCCCCCCCCCHHHHHHHHHHHHHcCCcE
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIV-YRPKWAGGLYEGDEHKRLEALHLAEDLGADY  101 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T-~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dy  101 (409)
                      ++.++-++.+.+.|.|.||.=.....+ .+.+.+..+++...-+-|.. .|..         .+.-...++.+...|++.
T Consensus        28 ~~Kl~ia~~L~~~Gv~~IE~g~p~~~~-~d~e~v~~i~~~~~~~~i~~l~r~~---------~~~i~~a~~al~~ag~~~   97 (325)
T 3eeg_A           28 EEKIIVAKALDELGVDVIEAGFPVSSP-GDFNSVVEITKAVTRPTICALTRAK---------EADINIAGEALRFAKRSR   97 (325)
T ss_dssp             THHHHHHHHHHHHTCSEEEEECTTSCH-HHHHHHHHHHHHCCSSEEEEECCSC---------HHHHHHHHHHHTTCSSEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCCCH-hHHHHHHHHHHhCCCCEEEEeecCC---------HHHHHHHHHhhcccCCCE
Confidence            344444555566799999997533221 12334555555443333333 3543         211111222222338888


Q ss_pred             EEEeccCccc---------------hHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC-
Q 015310          102 VDFELKVASN---------------ILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN-  164 (409)
Q Consensus       102 vDiEl~~~~~---------------~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~-  164 (409)
                      |.+=....+-               .+.+.+ .+++.+.++..+.=+...++ .+.+.+.++++.+.|||.+-|+=|.- 
T Consensus        98 v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~-~~~~~~~~~~~~~~G~~~i~l~DT~G~  176 (325)
T 3eeg_A           98 IHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRAD-QAFLARMVEAVIEAGADVVNIPDTTGY  176 (325)
T ss_dssp             EEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSC-HHHHHHHHHHHHHHTCSEEECCBSSSC
T ss_pred             EEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccch-HHHHHHHHHHHHhcCCCEEEecCccCC
Confidence            8874443321               112223 35667788877765544443 57799999999999999988775543 


Q ss_pred             -CHhHHHHHHHHhcc-CC----CCEEEEE---cCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310          165 -DITEIARIFQLLSH-CQ----VPIIAYS---VGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (409)
Q Consensus       165 -~~~D~~~ll~~~~~-~~----~p~i~~~---MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~  230 (409)
                       ++.++.++++.+.+ .+    .|+ .+-   .--++...=+..-..|....=+++.. +-+.|+.+++++...++
T Consensus       177 ~~P~~v~~lv~~l~~~~~~~~~~~i-~~H~Hnd~GlA~AN~laA~~aGa~~vd~tv~GlGer~GN~~lE~vv~~L~  251 (325)
T 3eeg_A          177 MLPWQYGERIKYLMDNVSNIDKAIL-SAHCHNDLGLATANSLAALQNGARQVECTINGIGERAGNTALEEVVMAME  251 (325)
T ss_dssp             CCHHHHHHHHHHHHHHCSCGGGSEE-EECBCCTTSCHHHHHHHHHHHTCCEEEEBGGGCCSTTCCCBHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCCCceEE-EEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHH
Confidence             57888888776543 22    333 321   11122222222222233222222221 23689999999887776

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=85.15  E-value=2.6  Score=41.47  Aligned_cols=84  Identities=19%  Similarity=0.118  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecC-------CCCC----CC-------------hhHHHHHHhcCC-CcEEEEeccCC-C
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDC-------INNF----QP-------------GKDLEIILTKKP-LPVLIVYRPKW-A   76 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~-------l~~~----~~-------------~~~l~~l~~~~~-~PiI~T~R~~~-e   76 (409)
                      +++.+.++++.+.|+|.||+-.-+       |...    .+             .+.++.+++... .|+.+-++... .
T Consensus       166 ~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~  245 (377)
T 2r14_A          166 EDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLEL  245 (377)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCC
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence            344555666677899999997642       1110    11             122344444332 28888777642 2


Q ss_pred             CCC-CCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310           77 GGL-YEGDEHKRLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        77 GG~-~~~~~~~~~~ll~~~~~~g~dyvDiEl  106 (409)
                      .|. ...+.++..++.+.+.+.|+|||+|--
T Consensus       246 ~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~  276 (377)
T 2r14_A          246 FGLTDDEPEAMAFYLAGELDRRGLAYLHFNE  276 (377)
T ss_dssp             TTCCCSCHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence            221 122457888899999999999999843

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=85.14  E-value=0.54  Score=49.51  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=30.4

Q ss_pred             CEEEEEechhHHHHHHHHHHh-CCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKS-RGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~-~G~~i~v~nR~~  401 (409)
                      ..|+|+|+|.+|.+++..|++ .|++|+|+.|..
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~   66 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE   66 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            469999999999999999999 899999999864

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=85.13  E-value=0.66  Score=48.19  Aligned_cols=32  Identities=19%  Similarity=0.399  Sum_probs=29.8

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..|+|||+|-+|.++|+.|++.|.+|+|+.+.
T Consensus        33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~   64 (571)
T 2rgh_A           33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQ   64 (571)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            46999999999999999999999999999875

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=85.11  E-value=1.6  Score=41.11  Aligned_cols=84  Identities=15%  Similarity=0.251  Sum_probs=56.5

Q ss_pred             eEEEeeccCCHHHHHHHHHHHHh-cCCCEEEEEecCCCC------C--CC---hhHHHHHHhcCCCcEEEEeccCCCCCC
Q 015310           12 MICAPLMAQSVEQVLSNMYQAKA-EGADVVEIRLDCINN------F--QP---GKDLEIILTKKPLPVLIVYRPKWAGGL   79 (409)
Q Consensus        12 ~icv~l~~~~~~e~~~~~~~~~~-~~aD~vElRlD~l~~------~--~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~   79 (409)
                      .+.+.|.+.+.+++.+.++.+.+ .|+|.||+-+.+-..      +  ++   .+.++.+++..+.|+++-++...    
T Consensus       100 p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~~----  175 (311)
T 1ep3_A          100 PIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNV----  175 (311)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCS----
T ss_pred             cEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCh----
Confidence            36788999999998888877765 799999996532110      0  11   23344455556899998887422    


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEE
Q 015310           80 YEGDEHKRLEALHLAEDLGADYVDF  104 (409)
Q Consensus        80 ~~~~~~~~~~ll~~~~~~g~dyvDi  104 (409)
                         +  +..++.+.+.+.|+|+|++
T Consensus       176 ---~--~~~~~a~~l~~~G~d~i~v  195 (311)
T 1ep3_A          176 ---T--DIVPIAKAVEAAGADGLTM  195 (311)
T ss_dssp             ---S--CSHHHHHHHHHTTCSEEEE
T ss_pred             ---H--HHHHHHHHHHHcCCCEEEE
Confidence               1  2234566777889999998

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=85.08  E-value=7.2  Score=40.24  Aligned_cols=145  Identities=14%  Similarity=0.159  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .++...++++++.|+++|-+|.--+...+-.   +++..+.+..+.|+|+.-|               .   ..+++.|+
T Consensus        25 ~~l~~~ve~al~~Gv~~vQlR~K~~~~~~~~~~a~~l~~l~~~~~v~liIND~---------------~---dlA~~~gA   86 (540)
T 3nl6_A           25 KTLYGQVEAGLQNGVTLVQIREKDADTKFFIEEALQIKELCHAHNVPLIINDR---------------I---DVAMAIGA   86 (540)
T ss_dssp             CCHHHHHHHHHHTTCSEEEECCSSSCTTHHHHHHHHHHHHHHHTTCCEEECSC---------------S---HHHHHTTC
T ss_pred             chHHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHHHHHHhcCCEEEEeCc---------------H---HHHHHcCC
Confidence            4567778888889999999997655432211   2233333556899998532               1   24567889


Q ss_pred             cEEEEeccCcc-chHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcC---CCEEEEE-eecC-CH-------
Q 015310          100 DYVDFELKVAS-NILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATG---ADIIKLV-FSVN-DI-------  166 (409)
Q Consensus       100 dyvDiEl~~~~-~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~g---aDivKia-~~~~-~~-------  166 (409)
                      |.|=+.-+... ...++++   ..+..+=+|.|+      .+|+    .++.+.|   +|++.+- +.|. +.       
T Consensus        87 dGVHLgq~dl~~~~ar~~l---g~~~iiG~S~ht------~eea----~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~  153 (540)
T 3nl6_A           87 DGIHVGQDDMPIPMIRKLV---GPDMVIGWSVGF------PEEV----DELSKMGPDMVDYIGVGTLFPTLTKKNPKKAP  153 (540)
T ss_dssp             SEEEECTTSSCHHHHHHHH---CTTSEEEEEECS------HHHH----HHHHHTCC--CCEEEESCCSCCCCCC----CC
T ss_pred             CEEEEChhhcCHHHHHHHh---CCCCEEEEECCC------HHHH----HHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCC
Confidence            98877654432 2223332   456778889994      2443    4566789   9999982 1222 22       


Q ss_pred             ---hHHHHHHHHhcc---CCCCEEEEEcCccchhhhhh
Q 015310          167 ---TEIARIFQLLSH---CQVPIIAYSVGERGLVSQLL  198 (409)
Q Consensus       167 ---~D~~~ll~~~~~---~~~p~i~~~MG~~G~~SRi~  198 (409)
                         +-+.++.+...+   .++|+++++==....+.+++
T Consensus       154 ~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~  191 (540)
T 3nl6_A          154 MGTAGAIRVLDALERNNAHWCRTVGIGGLHPDNIERVL  191 (540)
T ss_dssp             CHHHHHHHHHHHHHHTTCTTCEEEEESSCCTTTHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccCCCCEEEEcCCCHHHHHHHH
Confidence               222334444322   47899888421334455554

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=85.01  E-value=0.87  Score=43.48  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=27.9

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEE
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIF  397 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~  397 (409)
                      ...++.|+|+|.+|.+++..|.+.|.+|+++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~   48 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI   48 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            3468999999999999999999999999999

>3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus}

Probab=84.76  E-value=28  Score=33.22  Aligned_cols=149  Identities=15%  Similarity=0.099  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCC-CCC---CC---hhHHHHHHhcCCCcEEEEeccCCCCCCCCC--CHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCI-NNF---QP---GKDLEIILTKKPLPVLIVYRPKWAGGLYEG--DEHKRLEAL   91 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l-~~~---~~---~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~--~~~~~~~ll   91 (409)
                      |.+|+.+++.++.+.||.++=+-+--= +..   ++   .+.+..+++.++  +|+.+=|   ||....  +.++|++.+
T Consensus        30 TpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~d--~iI~~TT---gg~~~~~~~~eeR~~~~  104 (314)
T 3lot_A           30 TPDQIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQSD--VVINVTT---GGGGTLGIPVEERAKVV  104 (314)
T ss_dssp             SHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCC--CEEEECS---STTGGGTCCHHHHTTHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcCC--eEEEeCC---CCcCCCCCCHHHHHHHH
Confidence            458999999999999999998776542 111   11   234455555544  4444433   343334  788887665


Q ss_pred             HHHHHcCCcEEEEeccCcc----c-----------hHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCE
Q 015310           92 HLAEDLGADYVDFELKVAS----N-----------ILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADI  156 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~----~-----------~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDi  156 (409)
                      .   ++.+|..-+...+..    +           +-+..+..  ...      .-|..|  .+++...++.|++.|   
T Consensus       105 ~---~~~Pe~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~--~~~------~v~~N~--~~~i~~~~~~~~e~G---  168 (314)
T 3lot_A          105 P---ALKPEIATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEM--TRD------IVFRNT--FKDLEALSRIFKEND---  168 (314)
T ss_dssp             H---HHCCSEEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHH--GGG------CEECCC--HHHHHHHHHHHHHHT---
T ss_pred             H---hcCCceeeecCCCcccccccccccccccccccchhhccc--CCC------ceecCC--HHHHHHHHHHHHHcC---
Confidence            4   346888877764321    0           00111100  000      113334  467999999999999   


Q ss_pred             EEEEeecCCHhHHHHHHHHhccC---CCCEEEEEcCc
Q 015310          157 IKLVFSVNDITEIARIFQLLSHC---QVPIIAYSVGE  190 (409)
Q Consensus       157 vKia~~~~~~~D~~~ll~~~~~~---~~p~i~~~MG~  190 (409)
                      +|.-...-|..++..+..+..+=   ....+-+.||-
T Consensus       169 i~pE~e~fd~g~l~~~~~l~~~Gll~~p~~~~~VlGv  205 (314)
T 3lot_A          169 TKPELECYDIGQIYNTAFMFHEGYLEPPLRLQFIHGI  205 (314)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCSCSSEEEEEEECC
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCCCCCceEEEEecC
Confidence            57777777999988887776532   34466677764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=84.72  E-value=0.74  Score=47.62  Aligned_cols=34  Identities=29%  Similarity=0.289  Sum_probs=30.9

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+++|||+|-+|.++++.|.+.|.+|+|+.+..
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~   54 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAAS   54 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3579999999999999999999999999999853

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=84.72  E-value=0.85  Score=42.64  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=34.2

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +-++.=|+||.|++++..|.+.|++|++++|+.++.+++
T Consensus        20 ~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~   58 (303)
T 1yxm_A           20 VAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSA   58 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            457777999999999999999999999999998876654

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=84.70  E-value=1.7  Score=43.94  Aligned_cols=52  Identities=25%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCe-EEEEeC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDI  399 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~-i~v~nR  399 (409)
                      ++|.+.+++..+.+.+         .+++|++|+|.|.|-+|..++.-|.++|++ |.|.+.
T Consensus       210 g~Gv~~~~~~~~~~~G---------~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~  262 (449)
T 1bgv_A          210 GYGSVYYVEAVMKHEN---------DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGP  262 (449)
T ss_dssp             HHHHHHHHHHHHHHTT---------CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEET
T ss_pred             hHHHHHHHHHHHHHcc---------CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeC
Confidence            4677778777765432         578999999999999999999999999996 556774

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=84.69  E-value=0.63  Score=45.43  Aligned_cols=33  Identities=24%  Similarity=0.407  Sum_probs=29.6

Q ss_pred             CEEEEEechhHHHHHHHHHHhC--CCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~--G~~i~v~nR~~  401 (409)
                      ..++|+|+|.+|.++++.|++.  |.+|.|+.+..
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~  114 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV  114 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            3599999999999999999997  88999998864

>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*

Probab=84.68  E-value=12  Score=37.68  Aligned_cols=154  Identities=18%  Similarity=0.166  Sum_probs=89.3

Q ss_pred             CCCeeEEEeeccCCH-HHHHHHHHHHH---------hcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCC
Q 015310            8 KNTTMICAPLMAQSV-EQVLSNMYQAK---------AEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAG   77 (409)
Q Consensus         8 ~~~~~icv~l~~~~~-~e~~~~~~~~~---------~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eG   77 (409)
                      .|.|.|.+-|...-. +++...++...         ..++|+|=+|...-+...-...++.+.+..++|+++--      
T Consensus        89 ~n~p~ia~~V~D~~~e~~~~~~~~~~~~~~~~rvg~~~~~D~ial~~~s~dpe~~~~vVk~V~e~~dvPL~IDS------  162 (446)
T 4djd_C           89 YHETAIAIQVSDNLSSEELKAKVEAINGLNFDRVGQHYTIQAIAIRHDADDPAAFKAAVASVAAATQLNLVLMA------  162 (446)
T ss_dssp             CSCCEEEEEEETTSCHHHHHHHHHHHTTCCEEETTEEECCCEEEEECCSSSTHHHHHHHHHHHTTCCSEEEEEC------
T ss_pred             CCCCeEEEEEeCCCChHHHHHHHHHHHHHHHHHHHHhccCcEEEEEeCCCCHHHHHHHHHHHHHhCCCCEEEec------
Confidence            588999999988643 34444344331         13677777776532210001233344455799987652      


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCc----EEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHc
Q 015310           78 GLYEGDEHKRLEALHLAEDLGAD----YVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQAT  152 (409)
Q Consensus        78 G~~~~~~~~~~~ll~~~~~~g~d----yvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~  152 (409)
                          .+    -+.++++++.+.+    .--+..    +-.+.+. .+.+.+..+|+. |+     ..+.+.++.+.+.++
T Consensus       163 ----~d----pevleaALea~a~~~plI~sat~----dn~e~m~~lAa~y~~pVi~~-~~-----dl~~lkelv~~a~~~  224 (446)
T 4djd_C          163 ----DD----PDVLKEALAGVADRKPLLYAATG----ANYEAMTALAKENNCPLAVY-GN-----GLEELAELVDKIVAL  224 (446)
T ss_dssp             ----SC----HHHHHHHHGGGGGGCCEEEEECT----TTHHHHHHHHHHTTCCEEEE-CS-----SHHHHHHHHHHHHHT
T ss_pred             ----CC----HHHHHHHHHhhcCcCCeeEecch----hhHHHHHHHHHHcCCcEEEE-ec-----cHHHHHHHHHHHHHC
Confidence                12    2466667665533    222332    2222332 234577888887 43     678899999999999


Q ss_pred             CCCEEEEEeecCC------HhHHHHHHHH--hc---cCCCCEEEEE
Q 015310          153 GADIIKLVFSVND------ITEIARIFQL--LS---HCQVPIIAYS  187 (409)
Q Consensus       153 gaDivKia~~~~~------~~D~~~ll~~--~~---~~~~p~i~~~  187 (409)
                      |-+  +|+.=|-.      .+++.++-++  ..   ....|+|...
T Consensus       225 GI~--~IvLDPG~~g~~~t~~~~~~iRr~AL~~~d~~LgyPvi~~~  268 (446)
T 4djd_C          225 GHK--QLVLDPGARETSRAIADFTQIRRLAIKKRFRSFGYPIIALT  268 (446)
T ss_dssp             TCC--CEEEECCCCSHHHHHHHHHHHHHHHHHSCCGGGCSCBEEEC
T ss_pred             CCC--cEEECCCchhHHHHHHHHHHHHHHhhhccCcccCCCEEecc
Confidence            975  78887764      5566666333  11   2377888654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=84.55  E-value=0.54  Score=49.04  Aligned_cols=32  Identities=31%  Similarity=0.326  Sum_probs=29.7

Q ss_pred             EEEEEechhHHHHHHHHHHhC------CCeEEEEeCCh
Q 015310          370 MFVLAGAGGAGRALAFGAKSR------GARVVIFDIDF  401 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~------G~~i~v~nR~~  401 (409)
                      .|+|+|+|.+|.++|..|++.      |.+|.|+.|..
T Consensus        37 DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~   74 (584)
T 2gmh_A           37 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   74 (584)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCC
Confidence            599999999999999999998      99999999864

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=84.54  E-value=8.5  Score=34.84  Aligned_cols=161  Identities=13%  Similarity=0.075  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCCCCC----hhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           24 QVLSNMYQAKAEGADVVEIRLDCINNFQP----GKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        24 e~~~~~~~~~~~~aD~vElRlD~l~~~~~----~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +..+.++.+.+.|+|.+.++ |.-.....    .+.++++++..++|+|+.      ||..  +.+    -.+.+++.|+
T Consensus        32 d~~~~a~~~~~~Gad~i~v~-d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~------Ggi~--~~~----~~~~~~~~Ga   98 (252)
T 1ka9_F           32 DPVEAARAYDEAGADELVFL-DISATHEERAILLDVVARVAERVFIPLTVG------GGVR--SLE----DARKLLLSGA   98 (252)
T ss_dssp             CHHHHHHHHHHHTCSCEEEE-ECCSSTTCHHHHHHHHHHHHTTCCSCEEEE------SSCC--SHH----HHHHHHHHTC
T ss_pred             CHHHHHHHHHHcCCCEEEEE-cCCccccCccccHHHHHHHHHhCCCCEEEE------CCcC--CHH----HHHHHHHcCC
Confidence            34444555566799999888 64332211    234556666679999984      3432  222    3455566789


Q ss_pred             cEEEEeccC--ccchHHHHHhccC-CCcEEEEeccC-----------CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC
Q 015310          100 DYVDFELKV--ASNILGKQYSSHQ-SGTRFIVSCNL-----------DCETPSEEDLGYLVSRMQATGADIIKLVFSVND  165 (409)
Q Consensus       100 dyvDiEl~~--~~~~~~~l~~~~~-~~~kiI~S~H~-----------f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~  165 (409)
                      |.|=+=-..  ..+.+.++..... ....+-+|.|.           ++.. +..+..+..+++.+.|++.+=+.....+
T Consensus        99 d~V~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~-~~~~~~e~~~~~~~~G~~~i~~~~~~~~  177 (252)
T 1ka9_F           99 DKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVP-TGLHAVEWAVKGVELGAGEILLTSMDRD  177 (252)
T ss_dssp             SEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEE-EEEEHHHHHHHHHHHTCCEEEEEETTTT
T ss_pred             CEEEEChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccc-cCCcHHHHHHHHHHcCCCEEEEecccCC
Confidence            988764322  2233444442211 12345555542           1110 1123566677777889986543322221


Q ss_pred             ----HhHHHHHHHHhccCCCCEEEEE-cCccchhhhhh
Q 015310          166 ----ITEIARIFQLLSHCQVPIIAYS-VGERGLVSQLL  198 (409)
Q Consensus       166 ----~~D~~~ll~~~~~~~~p~i~~~-MG~~G~~SRi~  198 (409)
                          .-|...+-++....+.|+|+.+ .+....+-+++
T Consensus       178 g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~  215 (252)
T 1ka9_F          178 GTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAF  215 (252)
T ss_dssp             TTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHH
T ss_pred             CCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH
Confidence                1133333333444578887742 23223444444

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=84.52  E-value=0.9  Score=49.70  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .+++|+|||+|-+|.++++.|.+.|.+|+|+.+.
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~  310 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR  310 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            4679999999999999999999999999999875

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=84.48  E-value=51  Score=37.16  Aligned_cols=210  Identities=11%  Similarity=0.054  Sum_probs=115.1

Q ss_pred             CHHHHHHHHHHHHhcCCCE--EEE----Eec----CCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADV--VEI----RLD----CINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~--vEl----RlD----~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      +.+|.++-++.+.+.|+|+  +|.    ..|    ++. .++.+.+..+++.. +.++-.-+|..+==|.....+....+
T Consensus       571 ~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~-~~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~~  649 (1165)
T 2qf7_A          571 RTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFLT-EDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKY  649 (1165)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHC-CCHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcC-CCHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHHH
Confidence            3456666666666677776  886    444    222 24455666666544 44454445654444555566666667


Q ss_pred             HHHHHHHcCCcEEEEeccCcc-chHHHHH-hccCCCcEEE--Eec--cCCCCCC---CHhHHHHHHHHHHHcCCCEEEEE
Q 015310           90 ALHLAEDLGADYVDFELKVAS-NILGKQY-SSHQSGTRFI--VSC--NLDCETP---SEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        90 ll~~~~~~g~dyvDiEl~~~~-~~~~~l~-~~~~~~~kiI--~S~--H~f~~tp---~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      .++.+++.|++.+-|=..... +.++..+ .+++.+..+.  +||  |.++.+-   +.+.+.++++++.+.|||++-|+
T Consensus       650 ~i~~a~~~g~d~irif~sl~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~~Ga~~i~l~  729 (1165)
T 2qf7_A          650 FVRQAAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVK  729 (1165)
T ss_dssp             HHHHHHHHTCCEEEEECTTCCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHhcCcCEEEEEeeHHHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence            889999999998887332221 1122222 2334444433  444  3232211   35678999999999999999888


Q ss_pred             eecC--CHhHHHHHHHHhcc-CCCCEEEE--EcCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          161 FSVN--DITEIARIFQLLSH-CQVPIIAY--SVGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       161 ~~~~--~~~D~~~ll~~~~~-~~~p~i~~--~MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      =|.-  ++.++.++.+.+.+ .+.|+-.=  +.--++..+=+..-.-|....=+++.. +--+||.+++++...++.
T Consensus       730 DT~G~~~P~~~~~lv~~l~~~~~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd~ti~GlGe~~Gn~~le~vv~~L~~  806 (1165)
T 2qf7_A          730 DMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEALSG  806 (1165)
T ss_dssp             ETTCCCCHHHHHHHHHHHHHHCSSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBCGGGCSBTSCCBHHHHHHHHTT
T ss_pred             CccCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHhCCCEEEecccccCCCccchhHHHHHHHHHh
Confidence            6654  57788777766543 24443211  122223333333333333332233221 122677777776665553

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=84.34  E-value=10  Score=34.80  Aligned_cols=128  Identities=18%  Similarity=0.242  Sum_probs=74.3

Q ss_pred             HHHHHHHHhcCCCEE--EEEecCCCCCCChhHHHHHH---hcCCCcEEEEeccCCCCCCCC--CCHHHHHHHHHHHHHcC
Q 015310           26 LSNMYQAKAEGADVV--EIRLDCINNFQPGKDLEIIL---TKKPLPVLIVYRPKWAGGLYE--GDEHKRLEALHLAEDLG   98 (409)
Q Consensus        26 ~~~~~~~~~~~aD~v--ElRlD~l~~~~~~~~l~~l~---~~~~~PiI~T~R~~~eGG~~~--~~~~~~~~ll~~~~~~g   98 (409)
                      ..+++.+...|+|.|  -+|.-........+.+.++.   +..+.|+|+-.-  ..|....  .+.+...++.+.+.+.|
T Consensus       102 ~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~--~~G~~l~~~~~~~~~~~~a~~a~~~G  179 (273)
T 2qjg_A          102 VTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMY--PRGKHIQNERDPELVAHAARLGAELG  179 (273)
T ss_dssp             CSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEE--ECSTTCSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeC--CCCcccCCCCCHhHHHHHHHHHHHcC
Confidence            345566677899999  66655332110011222332   334788876432  2233211  24444455557888999


Q ss_pred             CcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           99 ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        99 ~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      +|||=+......+.++++...  -+..+|++==  -++++.++..+.+.++.+.|||-+=+
T Consensus       180 ad~i~~~~~~~~~~l~~i~~~--~~ipvva~GG--i~~~~~~~~~~~~~~~~~~Ga~gv~v  236 (273)
T 2qjg_A          180 ADIVKTSYTGDIDSFRDVVKG--CPAPVVVAGG--PKTNTDEEFLQMIKDAMEAGAAGVAV  236 (273)
T ss_dssp             CSEEEECCCSSHHHHHHHHHH--CSSCEEEECC--SCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred             CCEEEECCCCCHHHHHHHHHh--CCCCEEEEeC--CCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence            999988754444555555532  3567777532  23345678888888888899984433

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=84.30  E-value=0.67  Score=48.64  Aligned_cols=36  Identities=31%  Similarity=0.494  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          365 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       365 ~~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++||.++|-|+ +|.|++++..|++.|++|++.+|.
T Consensus       319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~  355 (604)
T 2et6_A          319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK  355 (604)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCc
Confidence            577899999986 689999999999999999998863

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=84.20  E-value=0.74  Score=49.83  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ++++|+|||+|-+|.++++.|.+.|.+|+|+.+.
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~  368 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAK  368 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence            3578999999999999999999999999999874

>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A

Probab=84.18  E-value=17  Score=34.18  Aligned_cols=137  Identities=15%  Similarity=0.217  Sum_probs=90.0

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC-------hhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP-------GKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~-------~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      |.+|+.+++.++.+.||.++=+-+-- ++-.+       .+.+..+|+.. ++.|=+|-     ||....+.++|...+ 
T Consensus        32 TpeEia~~A~~a~~AGAaivHlHvRd-~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TT-----g~~~~~~~eeR~~~~-  104 (282)
T 2y7e_A           32 TPEEQAKEAKACFEAGARVIHLHIRE-DDGRPSQRLDRFQEAISAIREVVPEIIIQIST-----GGAVGESFDKRLAPL-  104 (282)
T ss_dssp             SHHHHHHHHHHHHHHTEEEEEECEEC-TTSCEECCHHHHHHHHHHHHHHCTTSEEEECS-----SCSTTCCHHHHHGGG-
T ss_pred             CHHHHHHHHHHHHHcCCcEEEEeecC-CCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCC-----CCCCCCCHHHHHHHh-
Confidence            57899999999999999999887755 32211       23445555443 55555553     444334778888766 


Q ss_pred             HHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHH
Q 015310           93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARI  172 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~l  172 (409)
                         ++.+|+.-+.+.+.. +         . .      -.|..||  +.+.+.++.|++.|   +|.-...-|..++..+
T Consensus       105 ---~~~Pe~asl~~gs~N-f---------~-~------~v~~n~~--~~~~~~~~~~~e~G---v~pE~e~fd~g~l~~~  159 (282)
T 2y7e_A          105 ---ALKPEMATLNAGTLN-F---------G-D------DIFINHP--ADIIRLAEAFKQYN---VVPEVEVYESGMVDAV  159 (282)
T ss_dssp             ---GGCCSEEEEECCCEE-E---------T-T------EEECCCH--HHHHHHHHHHHHTT---CEEEEEECSHHHHHHH
T ss_pred             ---hcCCCEEEecccccc-c---------c-c------ccccCCH--HHHHHHHHHHHHcC---CeEEEEEECHHHHHHH
Confidence               246888776654322 0         0 0      1144454  67999999999999   5877888899999888


Q ss_pred             HHHhccC----CCCEEEEEcC
Q 015310          173 FQLLSHC----QVPIIAYSVG  189 (409)
Q Consensus       173 l~~~~~~----~~p~i~~~MG  189 (409)
                      ..+..+-    ..+.+-+.||
T Consensus       160 ~~l~~~Gl~p~~p~~~~~VlG  180 (282)
T 2y7e_A          160 ARLIKKGIITQNPLHIQFVLG  180 (282)
T ss_dssp             HHHHHTTSCCCSSCEEEEEEC
T ss_pred             HHHHHcCCCCCCCeEEEEEEe
Confidence            8776542    3356677776

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=84.10  E-value=3.9  Score=39.98  Aligned_cols=84  Identities=12%  Similarity=0.023  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecC------------------CCCC-C-----ChhHHHHHHhcCC-CcEEEEeccC-CC
Q 015310           23 EQVLSNMYQAKAEGADVVEIRLDC------------------INNF-Q-----PGKDLEIILTKKP-LPVLIVYRPK-WA   76 (409)
Q Consensus        23 ~e~~~~~~~~~~~~aD~vElRlD~------------------l~~~-~-----~~~~l~~l~~~~~-~PiI~T~R~~-~e   76 (409)
                      +++.+.++++.+.|+|.||+-.-+                  +... +     ..+.++.+++... .|+.+-++.. +.
T Consensus       161 ~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~  240 (365)
T 2gou_A          161 ADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTL  240 (365)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCT
T ss_pred             HHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEcccccc
Confidence            445555666678899999996532                  1110 0     0122344444332 2887766653 22


Q ss_pred             CCC-CCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310           77 GGL-YEGDEHKRLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        77 GG~-~~~~~~~~~~ll~~~~~~g~dyvDiEl  106 (409)
                      .|. ...+.++..++.+.+.+.|+|||++--
T Consensus       241 ~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~  271 (365)
T 2gou_A          241 NGTVDADPILTYTAAAALLNKHRIVYLHIAE  271 (365)
T ss_dssp             TSCCCSSHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence            111 122457888899999999999999854

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=84.03  E-value=16  Score=34.63  Aligned_cols=142  Identities=13%  Similarity=0.087  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCC------CChhHHH-HHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNF------QPGKDLE-IILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHL   93 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~------~~~~~l~-~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   93 (409)
                      +.++.++-++.+.+.|.|.||.=-  +...      .+.+++. .+.+..+.++..-++          ..    +-++.
T Consensus        26 ~~e~k~~i~~~L~~~Gv~~IE~g~--~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~~----------~~----~~i~~   89 (307)
T 1ydo_A           26 ATEDKITWINQLSRTGLSYIEITS--FVHPKWIPALRDAIDVAKGIDREKGVTYAALVP----------NQ----RGLEN   89 (307)
T ss_dssp             CHHHHHHHHHHHHTTTCSEEEEEE--CSCTTTCGGGTTHHHHHHHSCCCTTCEEEEECC----------SH----HHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECC--CcCcccccccCCHHHHHHHhhhcCCCeEEEEeC----------CH----HhHHH
Confidence            456677777777778999999863  2111      1122222 222222333333222          11    23677


Q ss_pred             HHHcCCcEEEEeccCccc---------------hHHHHH-hccCCCcEEEEeccC-C----CCCCCHhHHHHHHHHHHHc
Q 015310           94 AEDLGADYVDFELKVASN---------------ILGKQY-SSHQSGTRFIVSCNL-D----CETPSEEDLGYLVSRMQAT  152 (409)
Q Consensus        94 ~~~~g~dyvDiEl~~~~~---------------~~~~l~-~~~~~~~kiI~S~H~-f----~~tp~~~~l~~~~~~~~~~  152 (409)
                      +++.|++.|.|=....+-               ...+.+ .+++.+.++-++.-. |    ...-+.+.+.+.++++.+.
T Consensus        90 a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (307)
T 1ydo_A           90 ALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEF  169 (307)
T ss_dssp             HHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhc
Confidence            888899999986655431               112223 345567766432211 1    1222467899999999999


Q ss_pred             CCCEEEEEeec--CCHhHHHHHHHHhcc
Q 015310          153 GADIIKLVFSV--NDITEIARIFQLLSH  178 (409)
Q Consensus       153 gaDivKia~~~--~~~~D~~~ll~~~~~  178 (409)
                      |+|.+-|+=+.  -++.++.++++.+.+
T Consensus       170 Ga~~i~l~DT~G~~~P~~v~~lv~~l~~  197 (307)
T 1ydo_A          170 GISELSLGDTIGAANPAQVETVLEALLA  197 (307)
T ss_dssp             TCSCEEEECSSCCCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCCCCcCHHHHHHHHHHHHH
Confidence            99999888433  368898888887654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=83.99  E-value=1.1  Score=42.63  Aligned_cols=36  Identities=14%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +.+++++|+|+|-+|--++..|.+.|.+|+++.|..
T Consensus       164 ~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~  199 (369)
T 3d1c_A          164 FNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTT  199 (369)
T ss_dssp             SCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCC
Confidence            457899999999999999999999999999998864

>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto reductase, succinic semialdehyde oxidoreductase, AKR7 family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 2clp_A* 2c91_A*

Probab=83.96  E-value=24  Score=33.40  Aligned_cols=175  Identities=10%  Similarity=0.024  Sum_probs=80.7

Q ss_pred             CCCCCeeEEEeecc----CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCC---ChhHHHHHHhc---CCCcEEEEeccCC
Q 015310            6 ITKNTTMICAPLMA----QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQ---PGKDLEIILTK---KPLPVLIVYRPKW   75 (409)
Q Consensus         6 ~~~~~~~icv~l~~----~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~---~~~~l~~l~~~---~~~PiI~T~R~~~   75 (409)
                      |++..|.||.=...    .+.++..+.++.+.+.|...+    |--....   ..+.+.+.++.   .+..++++-.-..
T Consensus         1 ~~~~~~~lglGt~~~g~~~~~~~~~~~l~~Al~~Gi~~~----DTA~~Yg~G~sE~~lG~al~~~~~~r~~~~i~TK~~~   76 (327)
T 1gve_A            1 MSQARPATVLGAMEMGRRMDVTSSSASVRAFLQRGHTEI----DTAFVYANGQSETILGDLGLGLGRSGCKVKIATKAAP   76 (327)
T ss_dssp             ---CCCEEEEECTTBTTTBCHHHHHHHHHHHHHTTCCEE----ECCTTGGGGHHHHHHTTSCCCTTSTTCCSEEEEEECS
T ss_pred             CCCCCCCeEEcccccCCCCCHHHHHHHHHHHHHcCCCEE----EchhhcCCCchHHHHHHHHhhcCCCCCeEEEEEEECC
Confidence            45566777764421    367888888999999998876    4332221   11222222221   1122444444311


Q ss_pred             CCCCCCCCH-HHHHHHHHHHHHcCCcEEEEeccC-c------cchHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHH
Q 015310           76 AGGLYEGDE-HKRLEALHLAEDLGADYVDFELKV-A------SNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLV  146 (409)
Q Consensus        76 eGG~~~~~~-~~~~~ll~~~~~~g~dyvDiEl~~-~------~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~  146 (409)
                      .++ ...+. .-+..+-+.+-++|.||||+=+-. +      ++..+.+.. .+++.+|-|+=.. |    +.+++.+.+
T Consensus        77 ~~~-~~~~~~~i~~~~~~SL~rL~~dyiDl~~lH~p~~~~~~~e~~~al~~l~~~Gkir~iGvSn-~----~~~~l~~~~  150 (327)
T 1gve_A           77 MFG-KTLKPADVRFQLETSLKRLQCPRVDLFYLHFPDHGTPIEETLQACHQLHQEGKFVELGLSN-Y----VSWEVAEIC  150 (327)
T ss_dssp             CTT-CCSSHHHHHHHHHHHHHHTTCSCEEEEEECSCCTTSCHHHHHHHHHHHHHTTSEEEEEEES-C----CHHHHHHHH
T ss_pred             CCC-CCCCHHHHHHHHHHHHHHHCCCeEeEEEecCCCCCCCHHHHHHHHHHHHhCCceeEEEecC-C----CHHHHHHHH
Confidence            111 12344 344555556678899999973211 1      122233322 2346666664322 1    134565555


Q ss_pred             HHHHHcC---CCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcCccc
Q 015310          147 SRMQATG---ADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERG  192 (409)
Q Consensus       147 ~~~~~~g---aDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G  192 (409)
                      +.+...|   .+++=+-..+-+...-..++.+..+.++.++  +++++|
T Consensus       151 ~~~~~~g~~~~~~~Q~~~~~~~~~~e~~l~~~~~~~gi~v~--a~spL~  197 (327)
T 1gve_A          151 TLCKKNGWIMPTVYQGMYNAITRQVETELFPCLRHFGLRFY--AFNPLA  197 (327)
T ss_dssp             HHHHHHTCCCEEEEEEECBTTBCGGGTTHHHHHHHHTCEEE--EECTTG
T ss_pred             HHHHHcCCCCeEEEeccCcceecccHHHHHHHHHHcCCeEE--Eecccc
Confidence            5555444   2233332333222111134555444455554  444443

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=83.93  E-value=0.62  Score=45.10  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             CEEEEEechhHHHHHHHHHHhC--CCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~--G~~i~v~nR~~  401 (409)
                      ..++|+|+|.+|.++++.|++.  |.+|+|+.+..
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~  100 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCc
Confidence            3699999999999999999998  88999998864

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=83.86  E-value=7.8  Score=37.21  Aligned_cols=144  Identities=15%  Similarity=0.121  Sum_probs=81.8

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCC---CCCCChhHHHHH-------HhcC-CCcEEEEeccCCCCCCCCCCHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCI---NNFQPGKDLEII-------LTKK-PLPVLIVYRPKWAGGLYEGDEHKRLE   89 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l---~~~~~~~~l~~l-------~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~   89 (409)
                      +.+++++.+++..+.|||+|.+=...-   ...+..+++.++       ++.. +.||-+  -|            .+-+
T Consensus        63 ~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISI--DT------------~~~~  128 (318)
T 2vp8_A           63 SDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISV--DT------------WRAQ  128 (318)
T ss_dssp             -CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEE--EC------------SCHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE--eC------------CCHH
Confidence            467888889999999999998876433   222323444443       2333 566432  21            3346


Q ss_pred             HHHHHHHcCCcEE-EEeccCccchHHHHHhccCCCcEEEEeccCCCCC-CCH-------------------hHHHHHHHH
Q 015310           90 ALHLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLDCET-PSE-------------------EDLGYLVSR  148 (409)
Q Consensus        90 ll~~~~~~g~dyv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~t-p~~-------------------~~l~~~~~~  148 (409)
                      ..+++++.|+++| ||--...++.++ +.  .+.+..+|+.+ . .++ |..                   +++.++++.
T Consensus       129 VaeaAl~aGa~iINDVsg~~d~~m~~-va--a~~g~~vVlmh-~-~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~  203 (318)
T 2vp8_A          129 VAKAACAAGADLINDTWGGVDPAMPE-VA--AEFGAGLVCAH-T-GGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAER  203 (318)
T ss_dssp             HHHHHHHHTCCEEEETTSSSSTTHHH-HH--HHHTCEEEEEC-C--------------CCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEECCCCCchHHHH-HH--HHhCCCEEEEC-C-CCCCccccccccccccccccHHHHHHHHHHHHHHH
Confidence            7888999998887 664444444433 22  23577888875 2 445 431                   446677888


Q ss_pred             HHHcCCCEEEEEe-----ecCCHhHHHHHHHHhcc---CCCCE
Q 015310          149 MQATGADIIKLVF-----SVNDITEIARIFQLLSH---CQVPI  183 (409)
Q Consensus       149 ~~~~gaDivKia~-----~~~~~~D~~~ll~~~~~---~~~p~  183 (409)
                      +.+.|-+-=+|..     +.++.++++.+++-+.+   .+.|+
T Consensus       204 a~~aGI~~~~IilDPG~GF~Kt~~~nl~ll~~l~~l~~lg~Pv  246 (318)
T 2vp8_A          204 AVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPV  246 (318)
T ss_dssp             HHHTTCCGGGEEEETTTTCCTTSHHHHHHHHTHHHHHTTSSCB
T ss_pred             HHHcCCChhhEEEcCCCCcccCHHHHHHHHHHHHHHHhCCCCE
Confidence            8888853113443     45677888888776543   35564

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=83.77  E-value=1.1  Score=45.63  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=32.1

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCC-eEEEEeCChH
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFE  402 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~-~i~v~nR~~~  402 (409)
                      .++++||.|+ ||.|++++..|.+.|+ +|++++|+..
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            4689999985 8899999999999999 6999999865

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=83.72  E-value=1.1  Score=43.44  Aligned_cols=39  Identities=21%  Similarity=0.297  Sum_probs=35.0

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ..+.|+++.|+|.|..|+.++..+..+|++|..++|...
T Consensus       137 ~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~  175 (334)
T 3kb6_A          137 RELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKR  175 (334)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccc
Confidence            457789999999999999999999999999999998643

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=83.60  E-value=0.68  Score=49.19  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=29.0

Q ss_pred             CEEEEEechhHHHHHHHHHHhC------CCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKSR------GARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~------G~~i~v~nR~  400 (409)
                      ..|+|||+|++|.++|+.|++.      |.+|.|+.+.
T Consensus        23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            3599999999999999999997      9999999874

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=83.60  E-value=1.1  Score=52.62  Aligned_cols=43  Identities=23%  Similarity=0.285  Sum_probs=36.1

Q ss_pred             CCCCCCEEEEEec-hh-HHHHHHHHHHhCCCeEEEE-eCChHHHHh
Q 015310          364 SPLAGRMFVLAGA-GG-AGRALAFGAKSRGARVVIF-DIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGa-GG-aarai~~aL~~~G~~i~v~-nR~~~ka~~  406 (409)
                      ..++||.+||-|+ || .|++++..|.+.|++|+++ .|+.+++++
T Consensus       671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~  716 (1887)
T 2uv8_A          671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTD  716 (1887)
T ss_dssp             BCCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHH
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence            4578999999997 45 9999999999999998888 687766644

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*

Probab=83.58  E-value=34  Score=33.39  Aligned_cols=191  Identities=12%  Similarity=0.105  Sum_probs=110.7

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCC--hhHHHHHHhc-CCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHc
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQP--GKDLEIILTK-KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDL   97 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~--~~~l~~l~~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~   97 (409)
                      +.++.++-++.+.+.|.|.+|.=.   +...+  .+.+..+++. .+.+++.-.|.         ..+.    ++.+++.
T Consensus        23 ~~~~k~~ia~~L~~~Gv~~IE~g~---p~~~~~~~~~~~~i~~~~~~~~v~~~~r~---------~~~d----i~~a~~~   86 (382)
T 2ztj_A           23 STQDKVEIAKALDEFGIEYIEVTT---PVASPQSRKDAEVLASLGLKAKVVTHIQC---------RLDA----AKVAVET   86 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEECC---TTSCHHHHHHHHHHHTSCCSSEEEEEEES---------CHHH----HHHHHHT
T ss_pred             CHHHHHHHHHHHHHcCcCEEEEcC---CcCCHHHHHHHHHHHhcCCCcEEEEEccc---------Chhh----HHHHHHc
Confidence            346666667777778999999843   22222  1234444432 24455555553         1211    5778889


Q ss_pred             CCcEEEEeccCcc--------------chHHHHH-hccCCC--cEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           98 GADYVDFELKVAS--------------NILGKQY-SSHQSG--TRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        98 g~dyvDiEl~~~~--------------~~~~~l~-~~~~~~--~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      |++.|.+=....+              +...+.+ .+++.+  .++-+|+=+...++ .+.+.+.++.+.+. ||.+-|+
T Consensus        87 g~~~v~i~~~~s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~-~~~~~~~~~~~~~~-a~~i~l~  164 (382)
T 2ztj_A           87 GVQGIDLLFGTSKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSE-EQDLLAVYEAVAPY-VDRVGLA  164 (382)
T ss_dssp             TCSEEEEEECC--------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSC-HHHHHHHHHHHGGG-CSEEEEE
T ss_pred             CCCEEEEEeccCHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCC-HHHHHHHHHHHHHh-cCEEEec
Confidence            9998887543322              1122222 345556  88999987755443 57899999999999 9999887


Q ss_pred             eecC--CHhHHHHHHHHhcc---CCCCEEEEE---cCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhh
Q 015310          161 FSVN--DITEIARIFQLLSH---CQVPIIAYS---VGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYK  230 (409)
Q Consensus       161 ~~~~--~~~D~~~ll~~~~~---~~~p~i~~~---MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~  230 (409)
                      =|.-  ++.++.++++.+.+   .+.| |.+-   .--++...=+..-..|....=+++.. +-..|+.+++++.-.+.
T Consensus       165 DT~G~~~P~~~~~lv~~l~~~~~~~~~-i~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv~~L~  242 (382)
T 2ztj_A          165 DTVGVATPRQVYALVREVRRVVGPRVD-IEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIGERNGITPLGGFLARMY  242 (382)
T ss_dssp             ETTSCCCHHHHHHHHHHHHHHHTTTSE-EEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCe-EEEEeCCCccHHHHHHHHHHHhCCCEEEEccccccccccchhHHHHHHHHH
Confidence            5433  57777777766543   2344 3432   12223333333333344333333322 34689999999875543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=83.55  E-value=0.81  Score=46.19  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             CEEEEEechhHHHHHHHHHHhC--CCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~--G~~i~v~nR~~  401 (409)
                      ++++|||+|.+|.+++..|.++  |.+|+|+++..
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~   71 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGE   71 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC
Confidence            5799999999999999999987  77999999864

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=83.49  E-value=1.5  Score=42.61  Aligned_cols=39  Identities=5%  Similarity=-0.152  Sum_probs=31.2

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      ..|++|||+|+ |++|.+++..+...|++|+.+. +.+|.+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~  202 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFD  202 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHH
Confidence            35789999999 8899999999999999766655 455544

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=83.39  E-value=1.1  Score=55.29  Aligned_cols=39  Identities=18%  Similarity=0.242  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEec-hh-HHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          365 PLAGRMFVLAGA-GG-AGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       365 ~~~~~~vlvlGa-GG-aarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      .++||.+||-|+ +| .|++++..|++.|++|++++|+.++
T Consensus      2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~ 2173 (3089)
T 3zen_D         2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDD 2173 (3089)
T ss_dssp             CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSH
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            478999999986 57 9999999999999999999998766

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=83.37  E-value=3.2  Score=40.53  Aligned_cols=87  Identities=11%  Similarity=0.146  Sum_probs=59.8

Q ss_pred             CCeeEEEeeccCCHHHHHHHHHHHH---hcCCCEEEEEecCCC-----CC-CChhHHH----HHHhcCCCcEEEEeccCC
Q 015310            9 NTTMICAPLMAQSVEQVLSNMYQAK---AEGADVVEIRLDCIN-----NF-QPGKDLE----IILTKKPLPVLIVYRPKW   75 (409)
Q Consensus         9 ~~~~icv~l~~~~~~e~~~~~~~~~---~~~aD~vElRlD~l~-----~~-~~~~~l~----~l~~~~~~PiI~T~R~~~   75 (409)
                      ..| +.+.|.+.+.+|..+.++.+.   ..++|++|+=+-+=.     .+ .+.+.+.    .+++..++|+++-+|+. 
T Consensus       126 ~~p-vivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~-  203 (354)
T 4ef8_A          126 KKP-LFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPY-  203 (354)
T ss_dssp             TCC-EEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCC-
T ss_pred             CCc-EEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCeEEEecCC-
Confidence            345 669999999999988888775   468999999886411     11 1112333    34455689999999974 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcC-CcEEE
Q 015310           76 AGGLYEGDEHKRLEALHLAEDLG-ADYVD  103 (409)
Q Consensus        76 eGG~~~~~~~~~~~ll~~~~~~g-~dyvD  103 (409)
                            .+.++..++.+.+.+.| +|.|-
T Consensus       204 ------~d~~~~~~~a~~~~~~Gg~d~I~  226 (354)
T 4ef8_A          204 ------FDFAHFDAAAEILNEFPKVQFIT  226 (354)
T ss_dssp             ------CSHHHHHHHHHHHHTCTTEEEEE
T ss_pred             ------CCHHHHHHHHHHHHhCCCccEEE
Confidence                  24666667777777787 88764

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=83.36  E-value=14  Score=34.81  Aligned_cols=149  Identities=16%  Similarity=0.151  Sum_probs=83.3

Q ss_pred             HHhcCCCEEEEEecCCC----CCCC------h---hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH-c
Q 015310           32 AKAEGADVVEIRLDCIN----NFQP------G---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED-L   97 (409)
Q Consensus        32 ~~~~~aD~vElRlD~l~----~~~~------~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~   97 (409)
                      +.+.|+|++ +-=|.+.    ..++      .   ...+.+.+..+.|+|+ .-  -.-|.+..+.++-++--.+.++ .
T Consensus        50 ~e~aG~d~i-lvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vv-aD--~pfgsy~~s~~~a~~na~rl~~ea  125 (281)
T 1oy0_A           50 FDEAGIPVL-LVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVV-AD--LPFGSYEAGPTAALAAATRFLKDG  125 (281)
T ss_dssp             HHTTTCCEE-EECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEE-EE--CCTTSSTTCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCCEE-EECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEE-EE--CCCCcccCCHHHHHHHHHHHHHHh
Confidence            345799999 6555432    1111      1   2334555667888887 32  2334455566655554445555 8


Q ss_pred             CCcEEEEeccCccchHHHHHhccCCCcEEEE-------eccC---C---CCCCCHhHHHHHHHHHHHcCCCEEEEEeecC
Q 015310           98 GADYVDFELKVASNILGKQYSSHQSGTRFIV-------SCNL---D---CETPSEEDLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus        98 g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~-------S~H~---f---~~tp~~~~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                      |++.|=||-..  +....+..+...++.+++       |.|.   |   -+|...+++++....+++.|||.+=+=..| 
T Consensus       126 Ga~aVklEdg~--e~~~~I~al~~agIpV~gHiGLtPqsv~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~vp-  202 (281)
T 1oy0_A          126 GAHAVKLEGGE--RVAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMVP-  202 (281)
T ss_dssp             CCSEEEEEBSG--GGHHHHHHHHHHTCCEEEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEEESCC-
T ss_pred             CCeEEEECCcH--HHHHHHHHHHHCCCCEEeeecCCcceecccCCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEEecCC-
Confidence            89999999763  222233222233555542       1121   1   123223667778888889999988776654 


Q ss_pred             CHhHHHHHHHHhccCCCCEEEEEcCcc
Q 015310          165 DITEIARIFQLLSHCQVPIIAYSVGER  191 (409)
Q Consensus       165 ~~~D~~~ll~~~~~~~~p~i~~~MG~~  191 (409)
                        +++.+  +++...++|+|.|+-|+.
T Consensus       203 --~~~a~--~it~~l~iP~igIGaG~~  225 (281)
T 1oy0_A          203 --AELAT--QITGKLTIPTVGIGAGPN  225 (281)
T ss_dssp             --HHHHH--HHHHHCSSCEEEESSCSC
T ss_pred             --HHHHH--HHHHhCCCCEEEeCCCCC
Confidence              23332  445556799999877753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=83.35  E-value=0.57  Score=46.72  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=29.9

Q ss_pred             EEEEEechhHHHHHHHHHHhCC-----CeEEEEeCCh
Q 015310          370 MFVLAGAGGAGRALAFGAKSRG-----ARVVIFDIDF  401 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~G-----~~i~v~nR~~  401 (409)
                      .++|||+|.+|.+++..|.+.|     .+|+|+.+..
T Consensus        32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~   68 (463)
T 3s5w_A           32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQG   68 (463)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCS
T ss_pred             CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCC
Confidence            6999999999999999999999     8999998875

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=83.28  E-value=14  Score=35.11  Aligned_cols=126  Identities=17%  Similarity=0.064  Sum_probs=67.9

Q ss_pred             HHHHHhcCCCEEEEEecCCCCCCChhHHH---HHH---hcCCCcEEEEeccCCCCCCCCCCH-HHHHHHHHHHHHcCCcE
Q 015310           29 MYQAKAEGADVVEIRLDCINNFQPGKDLE---IIL---TKKPLPVLIVYRPKWAGGLYEGDE-HKRLEALHLAEDLGADY  101 (409)
Q Consensus        29 ~~~~~~~~aD~vElRlD~l~~~~~~~~l~---~l~---~~~~~PiI~T~R~~~eGG~~~~~~-~~~~~ll~~~~~~g~dy  101 (409)
                      ++.+.+.|||+|=+=+-+=.+.+..++++   ++.   +..++|+++-+-.....-.-+.++ +...+..+.+.++|+||
T Consensus       114 ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~  193 (304)
T 1to3_A          114 AQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADL  193 (304)
T ss_dssp             HHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSE
T ss_pred             HHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCE
Confidence            45556789999982221112211223333   333   346999988765432221112233 44444577888899999


Q ss_pred             EEEeccC----ccchHHHHHhc-cC-CCcE-EEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310          102 VDFELKV----ASNILGKQYSS-HQ-SGTR-FIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus       102 vDiEl~~----~~~~~~~l~~~-~~-~~~k-iI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      +=++...    ..+.+.+++.. .. -... |++|     +-++.+++.+.++...+.|++.+=+
T Consensus       194 iKv~~~~~~~g~~~~~~~vv~~~~~~~~~P~Vv~a-----GG~~~~~~~~~~~~a~~aGa~Gv~v  253 (304)
T 1to3_A          194 YKVEMPLYGKGARSDLLTASQRLNGHINMPWVILS-----SGVDEKLFPRAVRVAMEAGASGFLA  253 (304)
T ss_dssp             EEECCGGGGCSCHHHHHHHHHHHHHTCCSCEEECC-----TTSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred             EEeCCCcCCCCCHHHHHHHHHhccccCCCCeEEEe-----cCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            9999842    12223333321 01 2344 6555     2334567777777777778765543

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=83.23  E-value=1.4  Score=40.05  Aligned_cols=39  Identities=23%  Similarity=0.252  Sum_probs=27.4

Q ss_pred             CCEEEEEechhHHHHHHHH--HHhCCC-eEEEEeCChHHHHh
Q 015310          368 GRMFVLAGAGGAGRALAFG--AKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~a--L~~~G~-~i~v~nR~~~ka~~  406 (409)
                      ..+++|+|+|.+|++.+..  ....|+ -+-+++++++++..
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~  126 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGT  126 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTC
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHh
Confidence            3579999999999999885  345577 47799999887654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=83.18  E-value=0.96  Score=46.29  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=29.1

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR  399 (409)
                      ...++|+|+|.+|.+++..|++.|.+++|+.+
T Consensus       212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~  243 (521)
T 1hyu_A          212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE  243 (521)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCeEEEEEC
Confidence            45799999999999999999999999988865

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=83.17  E-value=0.81  Score=48.26  Aligned_cols=33  Identities=21%  Similarity=0.356  Sum_probs=29.4

Q ss_pred             CEEEEEechhHHHHHHHHHH---h-CCCeEEEEeCCh
Q 015310          369 RMFVLAGAGGAGRALAFGAK---S-RGARVVIFDIDF  401 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~---~-~G~~i~v~nR~~  401 (409)
                      ..|+|||+|.+|.++|..|+   + .|.+|.|+.+..
T Consensus        23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            35999999999999999999   6 899999998764

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=83.03  E-value=1.6  Score=44.11  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=32.8

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCC---eEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~---~i~v~nR~  400 (409)
                      .+++..++++.|||-||-+++.-|...|.   +|++++|.
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~  254 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSK  254 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETT
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecc
Confidence            45677789999999999999999999998   69999874

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}

Probab=83.01  E-value=31  Score=32.38  Aligned_cols=199  Identities=17%  Similarity=0.079  Sum_probs=110.8

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      +.++.++-++.+.+.|.|.||.=.-... ..+.+.+..+.+.. +.++..-.|..         .+.-...++.+...|+
T Consensus        25 ~~~~K~~i~~~L~~~Gv~~IE~g~p~~~-~~d~e~v~~i~~~~~~~~i~~l~~~~---------~~di~~a~~~~~~ag~   94 (293)
T 3ewb_X           25 DVKEKIQIALQLEKLGIDVIEAGFPISS-PGDFECVKAIAKAIKHCSVTGLARCV---------EGDIDRAEEALKDAVS   94 (293)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECGGGC-HHHHHHHHHHHHHCCSSEEEEEEESS---------HHHHHHHHHHHTTCSS
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCCCC-ccHHHHHHHHHHhcCCCEEEEEecCC---------HHHHHHHHHHHhhcCC
Confidence            3455666666667789999998642111 11234455555433 45555555632         2222223333444678


Q ss_pred             cEEEEeccCccch---------------HHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeec
Q 015310          100 DYVDFELKVASNI---------------LGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSV  163 (409)
Q Consensus       100 dyvDiEl~~~~~~---------------~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~  163 (409)
                      +.|.+=....+-.               +.+.+ .+++.+.++..|.=+...+ +.+.+.+.++++.+.|||.+-++=|.
T Consensus        95 ~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~-~~~~~~~~~~~~~~~G~~~i~l~DT~  173 (293)
T 3ewb_X           95 PQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRS-DRAFLIEAVQTAIDAGATVINIPDTV  173 (293)
T ss_dssp             EEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGS-CHHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCC-CHHHHHHHHHHHHHcCCCEEEecCCC
Confidence            8888765543311               22333 3456677777776543333 34678999999999999998888554


Q ss_pred             C--CHhHHHHHHHHhccC-C----CCEEEEE---cCccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhh
Q 015310          164 N--DITEIARIFQLLSHC-Q----VPIIAYS---VGERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       164 ~--~~~D~~~ll~~~~~~-~----~p~i~~~---MG~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~  231 (409)
                      -  ++.++.++++.+.+. +    .| +.+-   .--++...=+..-..|....=+++.. +-+.|+.+++++...++.
T Consensus       174 G~~~P~~v~~lv~~l~~~~~~~~~~~-l~~H~Hnd~Gla~AN~laA~~aGa~~vd~sv~GlGeraGN~~~E~vv~~L~~  251 (293)
T 3ewb_X          174 GYTNPTEFGQLFQDLRREIKQFDDII-FASHCHDDLGMATANALAAIENGARRVEGTINGIGERAGNTALEEVAVALHI  251 (293)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTGGGSE-EEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCTTTCBCBHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCccCce-EEEEeCCCcChHHHHHHHHHHhCCCEEEeeccccccccccHhHHHHHHHHHh
Confidence            3  688888887765432 1    22 3331   11122233233223343332233322 246899999998877653

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=82.97  E-value=1.2  Score=45.66  Aligned_cols=36  Identities=28%  Similarity=0.392  Sum_probs=32.0

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCC-eEEEEeCChH
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFE  402 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~-~i~v~nR~~~  402 (409)
                      .++++||.|+ ||.|++++..|.+.|+ +|++++|+..
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~  295 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGP  295 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence            4689999985 8899999999999999 7999999864

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*

Probab=82.90  E-value=18  Score=34.46  Aligned_cols=114  Identities=15%  Similarity=0.113  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhcCCCEEEEEecCCCCC----CCh---hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHH
Q 015310           24 QVLSNMYQAKAEGADVVEIRLDCINNF----QPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAED   96 (409)
Q Consensus        24 e~~~~~~~~~~~~aD~vElRlD~l~~~----~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~   96 (409)
                      ++++.+++..+.|||+|-+....-...    +..   +.++.+++..+.|+.+- =        .+.++.+-+.++++++
T Consensus        75 ~~~~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~~vplsI~-D--------T~~~~~~~~V~eaal~  145 (310)
T 2h9a_B           75 DPVAWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAIDVPLMII-G--------CGVEEKDAEIFPVIGE  145 (310)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHCSSCEEEE-C--------CSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhCCceEEEE-C--------CCCCCCCHHHHHHHHH
Confidence            445556666789999999999753321    111   23334445568898761 0        2457788899999999


Q ss_pred             cCCc---E-EEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCC
Q 015310           97 LGAD---Y-VDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGA  154 (409)
Q Consensus        97 ~g~d---y-vDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~ga  154 (409)
                      .|++   . =|+.....++..+ +  +.+.+..+|+.+-.     +.+.+.++++.+.++|-
T Consensus       146 aga~~k~iINdvs~~~~~~~~~-~--aa~~g~~vv~m~~~-----dv~~l~~~~~~a~~~Gi  199 (310)
T 2h9a_B          146 ALSGRNCLLSSATKDNYKPIVA-T--CMVHGHSVVASAPL-----DINLSKQLNIMIMEMNL  199 (310)
T ss_dssp             HTTTSCCEEEEECTTTHHHHHH-H--HHHHTCEEEEECSS-----CHHHHHHHHHHHHTTTC
T ss_pred             hCCCCCCEEEECCCCccHHHHH-H--HHHhCCCEEEEChh-----HHHHHHHHHHHHHHCCC
Confidence            9987   4 4887654333322 2  23457778776421     35678888888888885

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=82.85  E-value=0.93  Score=46.26  Aligned_cols=35  Identities=26%  Similarity=0.280  Sum_probs=30.6

Q ss_pred             CCCEEEEEechhHHHH-HHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRA-LAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaara-i~~aL~~~G~~i~v~nR~~  401 (409)
                      +.|+++|+|.||+|.+ ++..|.++|++|+++++..
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            3589999999999996 7889999999999999764

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=82.80  E-value=7.8  Score=35.00  Aligned_cols=114  Identities=12%  Similarity=0.079  Sum_probs=62.6

Q ss_pred             CCCeeEEEeec---cCCHHHHHHHHHHHHhcCCCEEEEEecCC-----------CCCCC--hhHHHHHHhcCCCcEEEEe
Q 015310            8 KNTTMICAPLM---AQSVEQVLSNMYQAKAEGADVVEIRLDCI-----------NNFQP--GKDLEIILTKKPLPVLIVY   71 (409)
Q Consensus         8 ~~~~~icv~l~---~~~~~e~~~~~~~~~~~~aD~vElRlD~l-----------~~~~~--~~~l~~l~~~~~~PiI~T~   71 (409)
                      ++.-+|.+...   ..+.++.++   .+.+.|.|.||++.+..           ...++  .++++..++..++.+....
T Consensus         7 k~~mklg~~~~~~~~~~~~~~l~---~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~   83 (262)
T 3p6l_A            7 KNGWRLGMQSYSFHLFPLTEALD---KTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTG   83 (262)
T ss_dssp             HTTEEEEEEGGGGTTSCHHHHHH---HHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hcCcEEEEEecccCCCCHHHHHH---HHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence            34556666543   334555554   45567999999997531           11121  2345555555666654332


Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccC
Q 015310           72 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNL  132 (409)
Q Consensus        72 R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~  132 (409)
                      -..      ..+.+...+.++.|.++|+.+|=+.-.  .+.++++. .+++.++++.+=.|.
T Consensus        84 ~~~------~~~~~~~~~~i~~A~~lGa~~v~~~~~--~~~~~~l~~~a~~~gv~l~~En~~  137 (262)
T 3p6l_A           84 VYV------AEKSSDWEKMFKFAKAMDLEFITCEPA--LSDWDLVEKLSKQYNIKISVHNHP  137 (262)
T ss_dssp             EEC------CSSTTHHHHHHHHHHHTTCSEEEECCC--GGGHHHHHHHHHHHTCEEEEECCS
T ss_pred             ccC------CccHHHHHHHHHHHHHcCCCEEEecCC--HHHHHHHHHHHHHhCCEEEEEeCC
Confidence            211      123455667788888899888877532  23334444 233456665555554

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=82.68  E-value=0.82  Score=43.43  Aligned_cols=35  Identities=14%  Similarity=0.147  Sum_probs=29.1

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCC--CeEEEEeCC
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRG--ARVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G--~~i~v~nR~  400 (409)
                      ..+++|||.|| |+.|++++..|.+.|  ++|++.+|.
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~   59 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDAL   59 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecc
Confidence            45789999998 889999999999999  477777775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	409
d1sfla_	236	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	3e-53
d1gqna_	252	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	8e-53
d1vi2a2	102	c.58.1.5 (A:5-106) Putative shikimate dehydrogenas	9e-28
d1nvta2	110	c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE	2e-27
d1p77a2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	6e-27
d1npya2	102	c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like	1e-25
d1nyta2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	2e-25
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	0.002

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 236

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

 Score =  175 bits (444), Expect = 3e-53
 Identities = 54/233 (23%), Positives = 96/233 (41%), Gaps = 13/233 (5%)

Query: 12  MICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK----PLP 66
            + A +  Q S+E+ L      + +  DV+E+R+D   N    +  E+I   K       
Sbjct: 3   EVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFK 62

Query: 67  VLIVYRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQ---YSSHQS 122
           +L+ YR K  GG  +      L  +  LA   G D +D E +   +I   Q       Q 
Sbjct: 63  LLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQY 122

Query: 123 GTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC--- 179
               I+S +    TP  ++L ++  +MQ    + +KL    ++  ++  + Q +S     
Sbjct: 123 NKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDT 182

Query: 180 -QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 231
               ++  S+ + GL+S+     F GAL YG +      G   V  L+    +
Sbjct: 183 MDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL 235

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Length = 252

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

 Score =  174 bits (443), Expect = 8e-53
 Identities = 54/251 (21%), Positives = 93/251 (37%), Gaps = 19/251 (7%)

Query: 1   MGVVNITKNTT------MICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGK 54
           M  V + KN         I   LM + +  V +     +    D++E R+D   +    +
Sbjct: 1   MKTVTV-KNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQ 59

Query: 55  DLEIILTK-----KPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKV 108
            +             +P+L  +R    GG         L     A D G  D +D EL  
Sbjct: 60  SVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFT 119

Query: 109 ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDIT 167
               +      +H      ++S +   +TPS E++   + +MQA GADI K+        
Sbjct: 120 GDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKH 179

Query: 168 EIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTV 222
           ++  +              P+I  S+ + G++S+L    F  A  +G++K     G   V
Sbjct: 180 DVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAV 239

Query: 223 ESLRQTYKVEH 233
             LR    + H
Sbjct: 240 NDLRSVLMILH 250

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

 Score =  103 bits (258), Expect = 9e-28
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 236 ADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGF 293
           A  ++ GL++ P+ HS  P + N           Y+   VD            +    G 
Sbjct: 1   AKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGT 60

Query: 294 SVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 337
            V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNT
Sbjct: 61  GVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNT 102

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  102 bits (256), Expect = 2e-27
 Identities = 48/106 (45%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 234 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVP--MFVDDLKKFFSTYSSPDFA 291
           INA TKV GLI  PV HS  PI+HN  F+    N +YV   +  ++LK       +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 292 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 337
           GF+V  P+K  +MK+ DE+   AQ I AVNTI     DGK IGYNT
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNT 110

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

 Score =  101 bits (252), Expect = 6e-27
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVG 296
            ++ +   P+  SK P++ N      +    Y+    D    ++    +      G ++ 
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 337
            P+KE   +  DE    A+   A NT+ +   DGKL   NT
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNT 101

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

 Score = 97.3 bits (242), Expect = 1e-25
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 234 INADTKVF-GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 292
           IN DT++   L  +P   + G   HN  +  +  N IY      D++       +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 293 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 337
            +V  P+KE  M F DE+HP AQAI +VNTI+    +G L  YNT
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNT 102

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

 Score = 97.1 bits (241), Expect = 2e-25
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 239 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVG 296
           + + +   P+ HSK P +H    + +N    Y  +     D     + + S    G +V 
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 297 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 337
            P+KE      DE+   A    AVNT++R   DG+L+G NT
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNT 101

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID 400
           +G++ V  G G  G A+    K  G  V+  D+ 
Sbjct: 2   SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLS 35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	100.0
d1sfla_	236	Type I 3-dehydroquinate dehydratase {Staphylococcu	100.0
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	100.0
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	100.0
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	100.0
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.97
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.97
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	99.34
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.21
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	99.16
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.63
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	98.44
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.28
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.37
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.0
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.59
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.47
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.42
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.4
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.28
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.11
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.1
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.1
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.98
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.93
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.88
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.75
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.74
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.66
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.58
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.5
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.46
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.42
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.34
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.33
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.25
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.22
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	95.11
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.1
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.09
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.03
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.02
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.02
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.99
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.72
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.71
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.7
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.69
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.65
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.61
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.53
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	94.42
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.4
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.34
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.25
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.24
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	94.0
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.96
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	93.95
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.91
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.87
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.75
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.68
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	93.64
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	93.61
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	93.51
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.4
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	93.29
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	93.16
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.08
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	93.02
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.0
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.99
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	92.92
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.77
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.77
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.53
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	92.44
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.3
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.94
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.84
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.77
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	91.75
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.75
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.73
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.7
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.6
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	91.37
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	91.24
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	91.15
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	90.52
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	90.43
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.34
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	90.33
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	90.28
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	90.2
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	90.19
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	90.08
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.92
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	89.9
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	89.78
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	89.61
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.39
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	89.3
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	89.09
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	89.05
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	88.79
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.34
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	88.28
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	87.59
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	87.56
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.35
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	87.16
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	87.16
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	87.12
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	87.09
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	86.54
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	86.26
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	86.02
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.94
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	85.82
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	85.71
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	85.22
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.19
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	85.14
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	84.9
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	84.78
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	84.7
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	84.56
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	84.38
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	84.24
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.11
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	84.03
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	83.86
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	83.84
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	83.78
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	83.63
d1nvma2	289	4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d	83.61
d2g0wa1	275	Hypothetical protein Lmo2234 {Listeria monocytogen	83.53
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	82.86
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	82.77
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	82.68
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	80.39
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	80.03

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=100.00  E-value=1.1e-60  Score=453.19  Aligned_cols=227  Identities=22%  Similarity=0.332  Sum_probs=208.4

Q ss_pred             CCCCeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHH----HHHhcC-CCcEEEEeccCCCCCCCC
Q 015310            7 TKNTTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLE----IILTKK-PLPVLIVYRPKWAGGLYE   81 (409)
Q Consensus         7 ~~~~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~----~l~~~~-~~PiI~T~R~~~eGG~~~   81 (409)
                      -.++|+|||||++++.+|++++++++...+||+||||+|+|.+..+.+.+.    .+++.. ++|+|||+|+++|||.++
T Consensus        12 g~g~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~   91 (252)
T d1gqna_          12 GEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQT   91 (252)
T ss_dssp             TSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBC
T ss_pred             cCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCC
Confidence            468999999999999999999999998899999999999998876544443    344433 799999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcC-CcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           82 GDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        82 ~~~~~~~~ll~~~~~~g-~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      +++++|+++|+.++++| +||||||++..++.+++++ .+++.++++|+|||||++||+.++|.+++++|+++||||+|+
T Consensus        92 ~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~gaDivKi  171 (252)
T d1gqna_          92 ITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKI  171 (252)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCceEeccccccHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            99999999999999999 9999999999988777777 457789999999999999999999999999999999999999


Q ss_pred             EeecCCHhHHHHHHHHhcc-----CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhhcc
Q 015310          160 VFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH  233 (409)
Q Consensus       160 a~~~~~~~D~~~ll~~~~~-----~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~~~  233 (409)
                      |+||++.+|++++++++.+     .+.|+|+||||+.|++||+++++|||++||++++++|||||+++++|++++++++
T Consensus       172 a~~a~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tya~~~~~sAPGQ~~~~~l~~~l~~l~  250 (252)
T d1gqna_         172 AVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILH  250 (252)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHHHTCSSCCEEEECTTTTHHHHHCHHHHTCCEEECBSSSCCSTTCCBHHHHHHHHHHHH
T ss_pred             EecCCCHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcchhHHHHHHHhCCceEeccCCCCCCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998753     3789999999999999999999999999999999999999999999999998765

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.8e-54  Score=406.68  Aligned_cols=220  Identities=21%  Similarity=0.353  Sum_probs=187.4

Q ss_pred             eeEEEeeccC-CHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHH----Hhc-CCCcEEEEeccCCCCCCCCCCH
Q 015310           11 TMICAPLMAQ-SVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEII----LTK-KPLPVLIVYRPKWAGGLYEGDE   84 (409)
Q Consensus        11 ~~icv~l~~~-~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l----~~~-~~~PiI~T~R~~~eGG~~~~~~   84 (409)
                      .+||+|++.. +.++.+.+..+....++|+||||+|+|.+.+.. ++.++    ++. .++|+|||+|+++|||.+++++
T Consensus         2 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~D~vElRlD~l~~~~~~-~v~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~   80 (236)
T d1sfla_           2 VEVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQFENVTVD-QVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTN   80 (236)
T ss_dssp             CEEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTTSTTCCHH-HHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCH
T ss_pred             CcEEEecCCchhHHHHHHHHHHhcCcCCCEEEEEeccccCCCHH-HHHHHHHHHHhcCCCCcEEEEEeCHHHCCCCCCCH
Confidence            3689999998 656654433334456899999999999987543 34333    222 3789999999999999999999


Q ss_pred             HHHHHHHHHHHHcC-CcEEEEeccCccchH--HHHH-hccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEE
Q 015310           85 HKRLEALHLAEDLG-ADYVDFELKVASNIL--GKQY-SSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLV  160 (409)
Q Consensus        85 ~~~~~ll~~~~~~g-~dyvDiEl~~~~~~~--~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia  160 (409)
                      ++|+++|+.+++.+ +||||||+..+.+..  ..+. .+++.++++|+|||||++||+.+++.+++++|+++||||+|||
T Consensus        81 ~~~~~ll~~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~~~~vI~S~H~f~~TP~~~el~~~~~~~~~~gaDivKia  160 (236)
T d1sfla_          81 DSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLA  160 (236)
T ss_dssp             HHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHHHHhcCCchhhhhhcchhhHHHHHHHHHHhhcCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            99999999999875 999999999876532  2333 4677899999999999999999999999999999999999999


Q ss_pred             eecCCHhHHHHHHHHhcc----CCCCEEEEEcCccchhhhhhcCCCCCccccccCCCCCCCCCCCHHHHHhhhhh
Q 015310          161 FSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV  231 (409)
Q Consensus       161 ~~~~~~~D~~~ll~~~~~----~~~p~i~~~MG~~G~~SRi~~~~~Gs~ltf~~l~~~sAPGQ~~~~~l~~~~~~  231 (409)
                      +||++.+|++++++++.+    .+.|+|+||||+.|++||++++.|||++||+++++++||||+++++|++++++
T Consensus       161 ~~~~~~~D~~~ll~~~~~~~~~~~~pii~~~MG~~G~~sRi~~~~~GS~~tya~~~~~sAPGQ~~~~~lr~~l~~  235 (236)
T d1sfla_         161 VMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL  235 (236)
T ss_dssp             ECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCCSSTTCCBHHHHHHHHTT
T ss_pred             EecCCHHHHHHHHHHHHHHhhccCCCEEEEecCCcchHHHHHHHHhCCceEEccCCCCCCCCCcCHHHHHHHHhh
Confidence            999999999999998754    37899999999999999999999999999999999999999999999999864

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=5.9e-35  Score=238.24  Aligned_cols=99  Identities=23%  Similarity=0.392  Sum_probs=94.5

Q ss_pred             ceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHH
Q 015310          238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ  315 (409)
Q Consensus       238 ~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~  315 (409)
                      |++|||||+||+||+||.|||.+|+++|+++.|.++++  ++++++++.+++.+|.|+|||||||+++++++|++|+.|+
T Consensus         1 M~~~~viG~PI~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1p77a2           1 MDLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAK   80 (101)
T ss_dssp             CEEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHhccccceeeccHHHHHHHHHhccCCHHHH
Confidence            57899999999999999999999999999999999987  6899999999889999999999999999999999999999


Q ss_pred             HhccceEEEEeCCCCeEEEEcC
Q 015310          316 AIAAVNTIIRRPSDGKLIGYNT  337 (409)
Q Consensus       316 ~igAvNti~~~~~~g~l~G~NT  337 (409)
                      .+||||||++.+ +|+|+||||
T Consensus        81 ~igAvNti~~~~-~g~l~G~NT  101 (101)
T d1p77a2          81 LAEACNTLKKLD-DGKLYADNT  101 (101)
T ss_dssp             HHTCCSEEEECT-TSCEEEECC
T ss_pred             HcCeeEEEEECC-CCEEEEecC
Confidence            999999999863 899999999

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.5e-35  Score=237.94  Aligned_cols=99  Identities=29%  Similarity=0.507  Sum_probs=94.5

Q ss_pred             ceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHHH
Q 015310          238 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ  315 (409)
Q Consensus       238 ~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A~  315 (409)
                      |++|||||+||+||+||.|||.+|+++|+|+.|.++++  +++.++++.++..+|.|+|||||||+++++++|++|+.|+
T Consensus         1 M~~~~liG~pi~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1nyta2           1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAA   80 (101)
T ss_dssp             CCSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCcchhhhhcCChHhHHHHHHHhhhccchhheeehHHHHHHHHHhccCChHHH
Confidence            57899999999999999999999999999999999987  6899999999889999999999999999999999999999


Q ss_pred             HhccceEEEEeCCCCeEEEEcC
Q 015310          316 AIAAVNTIIRRPSDGKLIGYNT  337 (409)
Q Consensus       316 ~igAvNti~~~~~~g~l~G~NT  337 (409)
                      .+||||||++.+ ||+|+||||
T Consensus        81 ~igAvNti~~~~-~g~l~G~NT  101 (101)
T d1nyta2          81 LAGAVNTLMRLE-DGRLLGDNT  101 (101)
T ss_dssp             HHTCCSEEEECT-TSCEEEECC
T ss_pred             HhCcEEEEEECC-CCeEEEeCC
Confidence            999999999863 899999999

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.7e-35  Score=237.25  Aligned_cols=99  Identities=29%  Similarity=0.517  Sum_probs=95.3

Q ss_pred             cceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcHHH
Q 015310          237 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLA  314 (409)
Q Consensus       237 ~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~~A  314 (409)
                      +.++|||||+||+||+||.|||.+|+++|+|+.|.++++  ++++++++.+++.+|.|+|||||||+.+++++|++|+.|
T Consensus         2 k~~l~GliG~Pi~hS~SP~ihn~~f~~~gi~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a   81 (102)
T d1vi2a2           2 KYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAA   81 (102)
T ss_dssp             CCEEEEEEESCCTTCSHHHHHHHHHHHTTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSTTGGGGGCSEECHHH
T ss_pred             CeEEEEEEcCCcccccCHHHHHHHHHHcCCCcEEeeEeeCchHHHHHHHHhhhhccchhhhhhHHHHHHHHhcccCCHHH
Confidence            468999999999999999999999999999999999998  689999999988899999999999999999999999999


Q ss_pred             HHhccceEEEEeCCCCeEEEEcC
Q 015310          315 QAIAAVNTIIRRPSDGKLIGYNT  337 (409)
Q Consensus       315 ~~igAvNti~~~~~~g~l~G~NT  337 (409)
                      +.+||||||+++  +|+|+||||
T Consensus        82 ~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1vi2a2          82 KLVGAINTIVND--DGYLRGYNT  102 (102)
T ss_dssp             HHHTCCSEEEEE--TTEEEEECH
T ss_pred             HhhCcEEEEEEE--CCEEEEeCC
Confidence            999999999987  999999998

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=1e-32  Score=228.14  Aligned_cols=103  Identities=48%  Similarity=0.684  Sum_probs=98.0

Q ss_pred             cccccceEEeeeccCCcccCCHHhHHHHHHhcCCCceEeecCc--ccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhh
Q 015310          233 HINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEV  310 (409)
Q Consensus       233 ~i~~~~~~~~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~--~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~  310 (409)
                      .++.+|++|||||+||+||+||.|||.+|+++|+++.|.++++  ++++.+++.+++.+|.|+|||||||+++++++|++
T Consensus         6 mi~~~tk~~gliG~pi~~S~SP~ihn~~~~~~gi~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~   85 (110)
T d1nvta2           6 MINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEI   85 (110)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEE
T ss_pred             ccCCCccEEEEEcCCcccccCHHHHHHHHHHcCCcEEEeecccCHHHHHHHHHhhcccCcchhheehHHHHHHHHHhccC
Confidence            4567789999999999999999999999999999999999988  47899999998889999999999999999999999


Q ss_pred             cHHHHHhccceEEEEeCCCCeEEEEcC
Q 015310          311 HPLAQAIAAVNTIIRRPSDGKLIGYNT  337 (409)
Q Consensus       311 ~~~A~~igAvNti~~~~~~g~l~G~NT  337 (409)
                      |+.|+.+||||||++.  +|+|+||||
T Consensus        86 s~~a~~igavNti~~~--~~~l~G~NT  110 (110)
T d1nvta2          86 DKDAQLIGAVNTIKIE--DGKAIGYNT  110 (110)
T ss_dssp             CHHHHHHTCCCEEEEE--TTEEEEECC
T ss_pred             CHHHHHhCcEEEEEEE--CCEEEEeCC
Confidence            9999999999999997  899999999

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=2.4e-31  Score=216.97  Aligned_cols=100  Identities=37%  Similarity=0.596  Sum_probs=95.0

Q ss_pred             ccccceEE-eeeccCCcccCCHHhHHHHHHhcCCCceEeecCcccHHHHHHHhcCCCCCeEEEcccchHHHHhhhhhhcH
Q 015310          234 INADTKVF-GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  312 (409)
Q Consensus       234 i~~~~~~~-~viG~pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~i~~~~d~~~~  312 (409)
                      ++.+|++| +++|+|  ||+||.|||++|+++|+|+.|.++++++++.+++.++..+|.|+|||||||+++++++|++++
T Consensus         2 i~~~t~~~~~i~g~P--~s~SP~ihn~~~~~~gi~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~s~   79 (102)
T d1npya2           2 INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIHP   79 (102)
T ss_dssp             CCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEECH
T ss_pred             cCCCCEEEEEEcCCc--ccCCHHHHHHHHHHcCCCeEEeeEecccHHHHHHHHhccccceeEEehhHHHHHHHHhhhCCh
Confidence            45678885 899999  889999999999999999999999999999999999889999999999999999999999999


Q ss_pred             HHHHhccceEEEEeCCCCeEEEEcC
Q 015310          313 LAQAIAAVNTIIRRPSDGKLIGYNT  337 (409)
Q Consensus       313 ~A~~igAvNti~~~~~~g~l~G~NT  337 (409)
                      .|+.+||||||+++  +|+|+||||
T Consensus        80 ~a~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1npya2          80 SAQAIESVNTIVND--NGFLRAYNT  102 (102)
T ss_dssp             HHHTTTCCCEEEEE--TTEEEEECH
T ss_pred             hhhhcCcEEEEEEE--CCEEEEeCC
Confidence            99999999999987  899999998

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=7.5e-13  Score=115.95  Aligned_cols=58  Identities=24%  Similarity=0.248  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ||.||+++|++.             +..++||+|+|+||||+||||+|+|.++|++|+|+|||.+|+++|+
T Consensus         1 Dg~Gf~~~l~~~-------------~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~   58 (170)
T d1nyta1           1 DGVGLLSDLERL-------------SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELA   58 (170)
T ss_dssp             HHHHHHHHHHHH-------------TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH
T ss_pred             CHhHHHHHHHHc-------------CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHH
Confidence            899999999763             2567899999999999999999999999999999999999999875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=7.9e-12  Score=109.07  Aligned_cols=57  Identities=21%  Similarity=0.312  Sum_probs=51.2

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      ||+||.++|+...             .+ ++++|+|+||||+|||++++|.++|+ +|+|+||+.+|++.|+
T Consensus         1 D~~G~~~~l~~~~-------------~~-~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~   58 (167)
T d1npya1           1 DYIAIVKLIEKYH-------------LN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLA   58 (167)
T ss_dssp             HHHHHHHHHHHTT-------------CC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHH
T ss_pred             ChHHHHHHHHHcC-------------CC-CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHH
Confidence            8999999987641             33 67899999999999999999999999 8999999999999885

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=99.16  E-value=1.7e-11  Score=107.43  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=51.5

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ||.||+.+|++.             +..+++|+|+|+||||+|||++++|.+.+.+|+|+||+.++++.++
T Consensus         1 D~~Gf~~~l~~~-------------~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~   58 (171)
T d1p77a1           1 DGIGLVTDLQRL-------------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELA   58 (171)
T ss_dssp             HHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CHHHHHHHHHHc-------------CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHH
Confidence            899999998753             2567899999999999999999999985559999999999999885

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.63  E-value=1.5e-08  Score=89.56  Aligned_cols=63  Identities=24%  Similarity=0.321  Sum_probs=56.0

Q ss_pred             EEcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          334 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       334 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      |+|||+.|.+..+.+..            +.+++||+++|.| +||.|++++..|++.|++|++++|+.+++++++
T Consensus         1 g~~~~~~~~v~~~~~~~------------~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~   64 (191)
T d1luaa1           1 GSNTTAAAGVALVVKAA------------GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA   64 (191)
T ss_dssp             GHHHHHHHHHHHHHHHT------------TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHc------------CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHH
Confidence            68999999999876543            3689999999999 599999999999999999999999999988764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.44  E-value=7.5e-08  Score=83.82  Aligned_cols=41  Identities=34%  Similarity=0.503  Sum_probs=36.8

Q ss_pred             cHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCC
Q 015310          338 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  391 (409)
Q Consensus       338 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G  391 (409)
                      ||.||+.+|++..             ..++||+|+|+||||+|||++|+|.+.|
T Consensus         1 D~~G~~~~l~~~~-------------~~~~~k~vlIlGaGG~arai~~aL~~~~   41 (177)
T d1nvta1           1 DGIGARMALEEEI-------------GRVKDKNIVIYGAGGAARAVAFELAKDN   41 (177)
T ss_dssp             HHHHHHHHHHHHH-------------CCCCSCEEEEECCSHHHHHHHHHHTSSS
T ss_pred             CHHHHHHHHHHhC-------------CCcCCCEEEEECCcHHHHHHHHHHcccc
Confidence            8999999998753             4689999999999999999999997766

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.28  E-value=7.4e-07  Score=76.26  Aligned_cols=44  Identities=25%  Similarity=0.472  Sum_probs=41.7

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      .+++++++|+|+|++|+.++..|...|+ +++|+|||.+||++|+
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~   65 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELA   65 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHH
Confidence            5789999999999999999999999999 8999999999999886

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=6.7e-05  Score=57.57  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +++||+++|+|.|.+|++++..|.++|++|++++.+.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            4789999999999999999999999999999999854

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.00  E-value=0.00043  Score=63.69  Aligned_cols=45  Identities=20%  Similarity=0.307  Sum_probs=40.4

Q ss_pred             CCCCCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhhh
Q 015310          364 SPLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLLL  408 (409)
Q Consensus       364 ~~~~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~la  408 (409)
                      ..++||+|||-| +||.|++++..|++.|++|++.+|+.++.++++
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~   66 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATA   66 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence            468999999998 589999999999999999999999998876653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.59  E-value=0.00096  Score=60.28  Aligned_cols=55  Identities=22%  Similarity=0.337  Sum_probs=42.3

Q ss_pred             EcCcHHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          335 YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       335 ~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .|-|+..++...+..+.            ..-+.|+|+|||||-+|.++|+.|++.|.+|+|+.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~------------~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1           9 QENDYEEFLEIARNGLK------------ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             CCTTHHHHHHHHHHCSC------------CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCccHHHHHHHHhcCCC------------CCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            46677777776544321            12245799999999999999999999999999998753

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.47  E-value=0.005  Score=53.68  Aligned_cols=60  Identities=27%  Similarity=0.389  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ++|...+++..+...+        ..+++|++|+|.|.|.+|+.++..|.+.|++|++++.+.++...
T Consensus         6 a~Gv~~~~~~~~~~~g--------~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~   65 (201)
T d1c1da1           6 AVGVFEAMKATVAHRG--------LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAH   65 (201)
T ss_dssp             HHHHHHHHHHHHHHTT--------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC--------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHH
Confidence            5688888876654322        13689999999999999999999999999999999998877654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0015  Score=56.11  Aligned_cols=36  Identities=36%  Similarity=0.591  Sum_probs=33.3

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ..+|+|+|||+|.+|.++|+.|++.|.+|+|+.++.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            356899999999999999999999999999999874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.40  E-value=0.0019  Score=50.85  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=35.5

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      .+++||+++|+|+|.+|.+-+..|.+.|++|+|++.+...
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~   47 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIP   47 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCH
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCh
Confidence            3578999999999999999999999999999999876543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.28  E-value=0.0045  Score=52.01  Aligned_cols=44  Identities=14%  Similarity=0.203  Sum_probs=38.2

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCC--eEEEEeCChHHHHhhh
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~--~i~v~nR~~~ka~~la  408 (409)
                      ....+++.|+|+|.+|.+++|.|...|.  +|.++++++++++..+
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~a   62 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEM   62 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHH
Confidence            3456799999999999999999999995  8999999988886543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.11  E-value=0.0071  Score=50.40  Aligned_cols=40  Identities=28%  Similarity=0.274  Sum_probs=36.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|.+|+|+|+|+.|..++..+...|++|++++++++|.+.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~   65 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEV   65 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHH
Confidence            5789999999999999999999999999999999888654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.0034  Score=53.25  Aligned_cols=40  Identities=33%  Similarity=0.355  Sum_probs=36.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      +|.+|+|+|||++|..++..+..+|+ +|++++++++|.+.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~   68 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKL   68 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccc
Confidence            58899999999999999999999999 89999999887654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0084  Score=50.37  Aligned_cols=43  Identities=37%  Similarity=0.525  Sum_probs=40.0

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      ..+.||+++|+|-|-.||.+|..|..+|++|+|+++++-+|-+
T Consensus        20 ~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~   62 (163)
T d1li4a1          20 VMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQ   62 (163)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             ceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHH
Confidence            5688999999999999999999999999999999999987754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.98  E-value=0.0032  Score=52.85  Aligned_cols=40  Identities=20%  Similarity=0.267  Sum_probs=35.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|.+++|+|+|+.|..++..+..+|++|++++++++|.+.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~   66 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRED   66 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHH
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHH
Confidence            5789999999999999999888999999999999887654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.93  E-value=0.0082  Score=49.84  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=36.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~  406 (409)
                      .|.+|+|+|+|++|.+++..++..|++|++++++++|.+.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~   66 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLEL   66 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHh
Confidence            4789999999999999999999999999999999887654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.88  E-value=0.0068  Score=51.18  Aligned_cols=41  Identities=37%  Similarity=0.409  Sum_probs=38.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +..+|+|||+|-+|+.++..+..+|++|++++++.++.+++
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l   71 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYL   71 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHH
Confidence            45789999999999999999999999999999999998876

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.75  E-value=0.0063  Score=51.57  Aligned_cols=40  Identities=33%  Similarity=0.552  Sum_probs=36.5

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL  405 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~  405 (409)
                      -+|.+|+|+|+||.+..++..++.+|+ +|++++++++|.+
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~   68 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFE   68 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHH
Confidence            358899999999999999999999998 9999999988865

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.012  Score=49.15  Aligned_cols=39  Identities=31%  Similarity=0.422  Sum_probs=35.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~  405 (409)
                      .|.+|+|+|+|+.|..++..+...|+ +|++++++++|.+
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~   65 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLS   65 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHH
Confidence            47899999999999999999999999 8999999988865

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.66  E-value=0.0061  Score=51.58  Aligned_cols=40  Identities=30%  Similarity=0.272  Sum_probs=35.9

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      +|.+|+|+|+||+|..++..+..+|+ +|++++++++|.+.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~   67 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEA   67 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHH
Confidence            57899999999999999999999999 89999999887553

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.0051  Score=50.57  Aligned_cols=36  Identities=17%  Similarity=0.362  Sum_probs=33.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR  399 (409)
                      ..++||++||+|+|..|..-+..|.+.|++|+|+..
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            457899999999999999999999999999999964

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.50  E-value=0.0069  Score=51.16  Aligned_cols=40  Identities=25%  Similarity=0.392  Sum_probs=36.1

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL  405 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~  405 (409)
                      -.|.+|+|+|+||.+..++..++.+|+ +|++++++++|.+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~   66 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFP   66 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHH
Confidence            358899999999999999999999998 8999999987754

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.46  E-value=0.019  Score=48.02  Aligned_cols=44  Identities=32%  Similarity=0.448  Sum_probs=40.7

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .-+.||+++|+|-|-.||.+|..|..+|++|+|+.+|+-+|-+-
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA   62 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA   62 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred             ceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH
Confidence            56889999999999999999999999999999999999887654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.42  E-value=0.0097  Score=50.29  Aligned_cols=40  Identities=30%  Similarity=0.434  Sum_probs=36.0

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL  405 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~  405 (409)
                      -.|.+|+|+|+||.|..++..+...|+ +|++.+++++|.+
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~   67 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFP   67 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHH
Confidence            357899999999999999999999999 8999999988754

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.34  E-value=0.028  Score=49.73  Aligned_cols=61  Identities=23%  Similarity=0.345  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhc-CcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          339 CEASITAIEDAIKER-GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ++|...+++..+... +        ..+++|++++|-|-|-+|+.++..|.+.|++|++++.+..+.+.+
T Consensus        17 g~GV~~~~~~~~~~~~g--------~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~   78 (230)
T d1leha1          17 AYGVYRGMKAAAKEAFG--------SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAA   78 (230)
T ss_dssp             HHHHHHHHHHHHHHHHS--------SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC--------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHH
Confidence            467777766554321 1        246899999999999999999999999999999999988776554

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.33  E-value=0.012  Score=49.10  Aligned_cols=42  Identities=21%  Similarity=0.271  Sum_probs=36.6

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC--eEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~--~i~v~nR~~~ka~~l  407 (409)
                      .+..++.|+|+|.+|.+++|.|...|.  +|.+++++.++++..
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~   60 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGE   60 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhcc
Confidence            345689999999999999999999995  799999998887654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.25  E-value=0.012  Score=50.54  Aligned_cols=40  Identities=33%  Similarity=0.367  Sum_probs=35.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      .|.+|+|+|+|+.|..++..++..|+ +|++++++++|.+.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~   65 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAH   65 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHh
Confidence            57899999999999999998889998 89999999888653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.0038  Score=55.70  Aligned_cols=35  Identities=29%  Similarity=0.459  Sum_probs=31.8

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++++|+|+|+||.|..++..|+..|+ ++++++.|
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            346799999999999999999999999 99999865

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=95.11  E-value=0.24  Score=43.88  Aligned_cols=153  Identities=19%  Similarity=0.180  Sum_probs=93.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCC-CCCCh-hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH---HHHH
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCIN-NFQPG-KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA---LHLA   94 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~-~~~~~-~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l---l~~~   94 (409)
                      .+.+++.    .+.+.|||-||+.-++-. ...|. ..++.+++..++|+-+-+|++  ||.|-.++++...+   ++.+
T Consensus         8 ~s~~~a~----~A~~~GAdRIELc~~l~~GGlTPS~g~i~~~~~~~~iPv~vMIRPR--~GdF~Ys~~E~~~M~~di~~~   81 (247)
T d1twda_           8 YSMECAL----TAQQNGADRVELCAAPKEGGLTPSLGVLKSVRQRVTIPVHPIIRPR--GGDFCYSDGEFAAILEDVRTV   81 (247)
T ss_dssp             SSHHHHH----HHHHTTCSEEEECBCGGGTCBCCCHHHHHHHHHHCCSCEEEBCCSS--SSCSCCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHH----HHHHcCCCEEEEcCCcccCCCCCCHHHHHHHHHhcCCCeEEEEecC--CCCCCCCHHHHHHHHHHHHHH
Confidence            4555554    456789999999988654 33443 346667777899999999964  67777787665444   4466


Q ss_pred             HHcCCcEEEEeccC-----ccchHHHHHhccCCCcEEEEeccC-CCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCCHhH
Q 015310           95 EDLGADYVDFELKV-----ASNILGKQYSSHQSGTRFIVSCNL-DCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITE  168 (409)
Q Consensus        95 ~~~g~dyvDiEl~~-----~~~~~~~l~~~~~~~~kiI~S~H~-f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~~~D  168 (409)
                      .++|++.|=+=.-.     +.+..++|+.. .++.+  +.||- |+.++++   .+-++.+.++|.|=+==.--+.+..|
T Consensus        82 k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~-a~~l~--vTFHRAfD~~~d~---~~al~~Li~lG~~rILTSGg~~~a~~  155 (247)
T d1twda_          82 RELGFPGLVTGVLDVDGNVDMPRMEKIMAA-AGPLA--VTFHRAFDMCANP---LYTLNNLAELGIARVLTSGQKSDALQ  155 (247)
T ss_dssp             HHTTCSEEEECCBCTTSSBCHHHHHHHHHH-HTTSE--EEECGGGGGCSCH---HHHHHHHHHHTCCEEEECTTSSSTTT
T ss_pred             HHcCCCeEEEEEECCCCCccHHHHHHHHHH-hcccC--eeeehhhhhhCCH---HHHHHHHHhcCCCeEeccCCCCchhH
Confidence            67889987663322     23556667633 23444  45675 9999864   44456666677543322222344555


Q ss_pred             HHHHHHHh-ccCCCCEE
Q 015310          169 IARIFQLL-SHCQVPII  184 (409)
Q Consensus       169 ~~~ll~~~-~~~~~p~i  184 (409)
                      .+.+++-+ ...+.++|
T Consensus       156 G~~~L~~L~~~a~~~iI  172 (247)
T d1twda_         156 GLSKIMELIAHRDAPII  172 (247)
T ss_dssp             THHHHHHHHTSSSCCEE
T ss_pred             HHHHHHHHHHhcCCcEE
Confidence            55444443 33444444

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.10  E-value=0.015  Score=48.68  Aligned_cols=42  Identities=29%  Similarity=0.483  Sum_probs=37.2

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      -+|.+|+|+|+||.+..++..++..|+ +|++++++++|.+..
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a   69 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA   69 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHH
Confidence            358899999999999999999999998 999999999886643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.09  E-value=0.032  Score=45.90  Aligned_cols=41  Identities=34%  Similarity=0.396  Sum_probs=36.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +|.+++|.|+|++|.+++..+...|++|+++.++++|.+.+
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~   67 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA   67 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence            57899999999999999999999999999999999887643

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.03  E-value=0.014  Score=49.89  Aligned_cols=41  Identities=24%  Similarity=0.196  Sum_probs=36.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +..+|+|||+|-+|..++.....+|++|++++.+.++.+++
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l   68 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV   68 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHH
Confidence            34689999999999999999999999999999988776665

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.02  E-value=0.01  Score=52.09  Aligned_cols=35  Identities=23%  Similarity=0.206  Sum_probs=32.3

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+|+++|||+|.+|-++|..|+++|.+++|+.++.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            46899999999999999999999999999998764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.017  Score=48.02  Aligned_cols=39  Identities=28%  Similarity=0.325  Sum_probs=34.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHHHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~ka~  405 (409)
                      .|.+|+|+|+||.|..++..+..+|++++++.++.+|.+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~   68 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKRE   68 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHH
Confidence            578999999999999999989999997778888877754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.99  E-value=0.015  Score=46.20  Aligned_cols=35  Identities=26%  Similarity=0.232  Sum_probs=32.2

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ++++++|+|+|.+|.-++..|.++|.+|+++.|..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            46899999999999999999999999999998763

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.022  Score=47.53  Aligned_cols=41  Identities=27%  Similarity=0.323  Sum_probs=35.3

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +|.+|||.|+ |++|.+++..+..+|++++++.++++|.+.+
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~   69 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV   69 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccc
Confidence            5789999996 9999999999999999988888888776543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.71  E-value=0.032  Score=46.46  Aligned_cols=41  Identities=24%  Similarity=0.329  Sum_probs=35.7

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .|.+|+|+|+|+.|..++..+...|+ .|++++++++|.+.+
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~   73 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA   73 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHH
Confidence            47899999999999999988888998 899999998876643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.70  E-value=0.019  Score=48.19  Aligned_cols=41  Identities=32%  Similarity=0.346  Sum_probs=35.7

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      -.|.+|+|+|+|+.|.+++..+..+|+ .|++.+++++|.+.
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~   68 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLEL   68 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHH
Confidence            357899999999999999999999999 78899998877654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.69  E-value=0.018  Score=45.00  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=31.5

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .++++|+|+|-+|--+|..|.++|.+|+|+.|..
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecc
Confidence            3789999999999999999999999999998864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.018  Score=45.15  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .++++|+|+|-+|--.+..|.++|.+|+|+.|..
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            3789999999999999999999999999999864

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.61  E-value=0.021  Score=45.22  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +++++|+|+|-+|--+|.+|.++|.+|+++.|..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            5899999999999999999999999999998864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.53  E-value=0.018  Score=45.27  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=31.1

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++++|+|+|-+|--+|.+|..+|.+|+|+.|.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~   54 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG   54 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehh
Confidence            478999999999999999999999999999985

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=94.42  E-value=0.34  Score=41.31  Aligned_cols=153  Identities=13%  Similarity=0.126  Sum_probs=86.3

Q ss_pred             EeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---hHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---KDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        15 v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      ..|+.++..+..+.++++++.|+|+|-+|.=.+...+..   ..+..+.+..+.|+|+.-+                  +
T Consensus         9 y~ITd~~~~~~~~~v~~~l~~Gv~~vqlR~k~~~~~e~~~~a~~l~~i~~~~~~~liind~------------------~   70 (206)
T d1xi3a_           9 YVITDRRLKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTREYDALFFVDDR------------------V   70 (206)
T ss_dssp             EEECCTTTSCHHHHHHHHHHTTCSEEEECCCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC------------------H
T ss_pred             EEEeCCcccCHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEechh------------------H
Confidence            345566665566778888899999999996544321111   1233333556889998622                  2


Q ss_pred             HHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecCC--Hh--
Q 015310           92 HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVND--IT--  167 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~~--~~--  167 (409)
                      +.+.+.++|.|=+.-+........   ....+.-+..|.|+      .++    +.++...|+|.+=+-..-.|  ..  
T Consensus        71 ~lA~~~~adGvHl~~~~~~~~~~~---~~~~~~iig~s~h~------~~e----~~~a~~~g~DYi~~gpvf~T~tk~~~  137 (206)
T d1xi3a_          71 DVALAVDADGVQLGPEDMPIEVAK---EIAPNLIIGASVYS------LEE----ALEAEKKGADYLGAGSVFPTKTKEDA  137 (206)
T ss_dssp             HHHHHHTCSEEEECTTSCCHHHHH---HHCTTSEEEEEESS------HHH----HHHHHHHTCSEEEEECSSCC----CC
T ss_pred             HHHHhccCceEeeccccccHhhhh---hcccccccccccCC------HHH----HHHHHhcCCCEEEecccccccccccc
Confidence            346677899888754433211111   12345567788886      233    34455679998876643221  11  


Q ss_pred             ---HHHHHHHHhccCCCCEEEEEcCccchhhhhh
Q 015310          168 ---EIARIFQLLSHCQVPIIAYSVGERGLVSQLL  198 (409)
Q Consensus       168 ---D~~~ll~~~~~~~~p~i~~~MG~~G~~SRi~  198 (409)
                         ....+-++.+..+.|+++++==..-.+..++
T Consensus       138 ~~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~  171 (206)
T d1xi3a_         138 RVIGLEGLRKIVESVKIPVVAIGGINKDNAREVL  171 (206)
T ss_dssp             CCCHHHHHHHHHHHCSSCEEEESSCCTTTHHHHH
T ss_pred             ccccHHHHHHHHHhcCCCEEEECCCCHHHHHHHH
Confidence               3334444445567898876433333444443

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.40  E-value=0.022  Score=47.32  Aligned_cols=39  Identities=33%  Similarity=0.575  Sum_probs=34.8

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHH
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSL  405 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~  405 (409)
                      +|.+|+|.|+||.+..++..++.+|+ .|++++++++|.+
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~   67 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFA   67 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHH
Confidence            57899999999999999999999998 8999999887754

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.34  E-value=0.022  Score=45.01  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=31.4

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .++++|+|+|-.|--.+..|.++|++|+|+.|..
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            3799999999999999999999999999998864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.25  E-value=0.032  Score=46.35  Aligned_cols=41  Identities=27%  Similarity=0.431  Sum_probs=36.3

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCChHHHHh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFEQSLL  406 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~~~ka~~  406 (409)
                      -+|.+|+|+|+||.+-.++..++..|+ +|++++++++|.+.
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~   68 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEK   68 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHH
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHH
Confidence            357899999999999999999999998 89999999888654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.24  E-value=0.025  Score=44.58  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +++++|+|+|-+|--+|.+|.++|.+|+++.|.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            4789999999999999999999999999999864

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.00  E-value=0.15  Score=44.67  Aligned_cols=76  Identities=18%  Similarity=0.148  Sum_probs=49.5

Q ss_pred             HHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEecc--CCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEec
Q 015310           29 MYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRP--KWAGGLYEGDEHKRLEALHLAEDLGADYVDFEL  106 (409)
Q Consensus        29 ~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~--~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl  106 (409)
                      ++.+.+.|+|.||+|-+++....+.+++++..+..++++....-.  ..+.+.   ..++..+.+..+.++|+.+|-+..
T Consensus        25 l~~~a~~G~dgIEi~~~~~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~~~~~---~~~~~~~~i~~A~~LG~~~v~~~~  101 (250)
T d1yx1a1          25 LPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDGQ---LNPELEPTLRRAEACGAGWLKVSL  101 (250)
T ss_dssp             HHHHHHHTCSEEEEEGGGCSSCCCHHHHHHHHHHTTCEEEEEEEEEEECTTSS---BCTTHHHHHHHHHHTTCSEEEEEE
T ss_pred             HHHHHHhCCCEEEEecccCCCcchHHHHHHHHHHcCCEEEEecccccccCchh---hHHHHHHHHHHHHHhCCCEEEEee
Confidence            455567899999999998876655567777777778877543221  122222   123445667788888988887654


Q ss_pred             c
Q 015310          107 K  107 (409)
Q Consensus       107 ~  107 (409)
                      .
T Consensus       102 g  102 (250)
T d1yx1a1         102 G  102 (250)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.96  E-value=0.029  Score=44.40  Aligned_cols=34  Identities=18%  Similarity=0.054  Sum_probs=31.5

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .|+++|+|+|-.|--++..|.++|.+|+|+.|..
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            3799999999999999999999999999999963

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.03  Score=40.82  Aligned_cols=42  Identities=24%  Similarity=0.202  Sum_probs=35.3

Q ss_pred             CCCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .++.+++|.|+ ||+|..++.-++.+|++|+.+.++++|.+-+
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~   72 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence            35788999986 8899999988899999999888888877654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.91  E-value=0.032  Score=44.71  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=32.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++++|+|+|-+|--++..|.++|.+|+|+.|..
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            36899999999999999999999999999999863

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.87  E-value=0.028  Score=46.97  Aligned_cols=41  Identities=27%  Similarity=0.278  Sum_probs=35.0

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +|++|+|.|+ |+.|.+++..++..|++|+.+.++++|.+.+
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~   68 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP   68 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccc
Confidence            5789999996 8999999999999999888888887776543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.75  E-value=0.027  Score=43.89  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=31.0

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++++|+|+|-+|--+|..|.++|++|+++.|.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~   53 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR   53 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeee
Confidence            478999999999999999999999999999886

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.68  E-value=0.038  Score=43.32  Aligned_cols=34  Identities=24%  Similarity=0.158  Sum_probs=31.4

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .++++|+|+|-.|--.|..|+++|++|+|+.|..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            4789999999999999999999999999998863

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=93.64  E-value=0.52  Score=40.59  Aligned_cols=143  Identities=18%  Similarity=0.140  Sum_probs=92.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCC
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGA   99 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~   99 (409)
                      .|.+|+.+.++++.+.+...|=++-.+.      +...+.++..+. -+.|+=.-+.|..   +-+.+..-.+.+++.|+
T Consensus        15 ~T~~~i~~lc~~A~~~~~~aVcV~P~~v------~~a~~~l~~s~v-~v~~VigFP~G~~---~~~~k~~e~~~ai~~GA   84 (211)
T d1ub3a_          15 ATLEEVAKAAEEALEYGFYGLCIPPSYV------AWVRARYPHAPF-RLVTVVGFPLGYQ---EKEVKALEAALACARGA   84 (211)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEECCGGGH------HHHHHHCTTCSS-EEEEEESTTTCCS---CHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCCeEEEECHHHH------HHHHHHccCCCC-ceEEEEecccccC---cHHHHHHHHHHHHHcCC
Confidence            4678888888888888877763222111      122233333333 4445544455544   44566666788999999


Q ss_pred             cEEEEeccCcc----------chHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEe----ecC
Q 015310          100 DYVDFELKVAS----------NILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVF----SVN  164 (409)
Q Consensus       100 dyvDiEl~~~~----------~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~----~~~  164 (409)
                      +-||+=++...          +.++.++. .+....|+|+-.+.+    +.+++....+-+.+.|||.+|-.+    ...
T Consensus        85 ~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L----~~~ei~~a~~~a~~aGadfiKTSTG~~~~ga  160 (211)
T d1ub3a_          85 DEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYF----SPEEIARLAEAAIRGGADFLKTSTGFGPRGA  160 (211)
T ss_dssp             SEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGS----CHHHHHHHHHHHHHHTCSEEECCCSSSSCCC
T ss_pred             CeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccC----CHHHHHHHHHHHHHhccceEEecCCCCCCCC
Confidence            99998665421          12233342 344456999988865    357888888889999999999865    345


Q ss_pred             CHhHHHHHHHHh
Q 015310          165 DITEIARIFQLL  176 (409)
Q Consensus       165 ~~~D~~~ll~~~  176 (409)
                      +++|+..+.+..
T Consensus       161 t~e~v~~m~~~~  172 (211)
T d1ub3a_         161 SLEDVALLVRVA  172 (211)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHh
Confidence            899997777664

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.61  E-value=0.42  Score=41.95  Aligned_cols=78  Identities=19%  Similarity=0.140  Sum_probs=44.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCCC----CChhHHHHHHhcCCCcEEEEeccCCCCCCCCC-CH---HHHHHHH
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINNF----QPGKDLEIILTKKPLPVLIVYRPKWAGGLYEG-DE---HKRLEAL   91 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~----~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~-~~---~~~~~ll   91 (409)
                      -+++|.++.+   .+.|.|.||||.|.....    ...++++++++..+++++--.-    ++.+.. .+   +...+++
T Consensus        18 l~lee~l~~a---~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~~l~~----~~~~~~~~~~~~~~~~~~i   90 (271)
T d2q02a1          18 LSIEAFFRLV---KRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINA----VYPFNQLTEEVVKKTEGLL   90 (271)
T ss_dssp             SCHHHHHHHH---HHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEE----ETTTTSCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHH---HHhCCCEEEEecCcccccccccCCHHHHHHHHHHcCCcEEEeec----ccccCCCCHHHHHHHHHHH
Confidence            3467776544   557999999998865432    2245677777777776542211    112222 22   2334455


Q ss_pred             HHHHHcCCcEEEE
Q 015310           92 HLAEDLGADYVDF  104 (409)
Q Consensus        92 ~~~~~~g~dyvDi  104 (409)
                      +.+.++|+..|=+
T Consensus        91 ~~a~~lG~~~v~~  103 (271)
T d2q02a1          91 RDAQGVGARALVL  103 (271)
T ss_dssp             HHHHHHTCSEEEE
T ss_pred             HHHHHcCCcEEEE
Confidence            6666777776654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.51  E-value=0.038  Score=46.90  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=35.2

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      .+.|+++.|+|.|..|+.++.-+..+|++|++++|+..
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccCceEEEeccccccccceeeeecccccccccccccc
Confidence            37899999999999999999999999999999999754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.40  E-value=0.039  Score=47.57  Aligned_cols=40  Identities=23%  Similarity=0.379  Sum_probs=35.8

Q ss_pred             CCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       363 ~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      +..+.|+++.|+|.|..|+.++..|..+|++|..+++...
T Consensus        38 g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CccccCCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            3567899999999999999999999999999999997643

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=93.29  E-value=0.044  Score=47.01  Aligned_cols=39  Identities=28%  Similarity=0.490  Sum_probs=35.6

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ..+.|+++.|+|.|..|+.++..|..+|++|..++|...
T Consensus        45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             eeeeCceEEEeccccccccceeeeeccccceeeccCccc
Confidence            568899999999999999999999999999999998643

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.16  E-value=0.65  Score=41.35  Aligned_cols=160  Identities=15%  Similarity=0.195  Sum_probs=99.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCChhHHHHHH---hc-CCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLEIIL---TK-KPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~~~~~~l~~l~---~~-~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      .+.+++++.+++..+.|||+|.+=.-.-.+    .++.+++.++.   +. .+..+++.+=|            .+.+..
T Consensus        23 ~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~~~~~~iSIDT------------~~~eVa   90 (264)
T d1ad1a_          23 NNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDVKISVDT------------FRSEVA   90 (264)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHTTSSSEEEEEC------------SCHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhcccCcccchhh------------hhHHHH
Confidence            467889999999999999999876554322    23345555543   21 23344555543            455788


Q ss_pred             HHHHHcCCcEEE-Ee-ccCccchHHHHHhccCCCcEEEEeccCCCCCCCH----hH----HHHHHHHHHHcCCCEEEEEe
Q 015310           92 HLAEDLGADYVD-FE-LKVASNILGKQYSSHQSGTRFIVSCNLDCETPSE----ED----LGYLVSRMQATGADIIKLVF  161 (409)
Q Consensus        92 ~~~~~~g~dyvD-iE-l~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~----~~----l~~~~~~~~~~gaDivKia~  161 (409)
                      +.|++.|+++|- |- ...+++.. +++  .+.+..+|+-|.  .++|..    .+    +.+.++++.+.|.+--+|..
T Consensus        91 ~~al~~Ga~iINDVs~g~~d~~~~-~~v--a~~~~~~ilmH~--~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~Iil  165 (264)
T d1ad1a_          91 EACLKLGVDIINDQWAGLYDHRMF-QVV--AKYDAEIVLMHN--GNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWL  165 (264)
T ss_dssp             HHHHHTTCCEEEETTTTSSCTHHH-HHH--HHTTCEEEEECC--CCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             HHHHhcCCcEeeccccccccccHH-HHH--hhcCcceeeeee--ccccccCccchhhhhHHHHHHHHHHhhccccceEEe
Confidence            899999999985 53 23333333 333  235677888543  344432    22    45556678888877667876


Q ss_pred             -----ecCCHhHHHHHHHHhcc---CCCCEEEEEcCccchhhhh
Q 015310          162 -----SVNDITEIARIFQLLSH---CQVPIIAYSVGERGLVSQL  197 (409)
Q Consensus       162 -----~~~~~~D~~~ll~~~~~---~~~p~i~~~MG~~G~~SRi  197 (409)
                           ..++.++++.|++-+..   .+.|+ .++.....-+.++
T Consensus       166 DPGiGFgKt~~~n~~ll~~l~~~~~~g~Pi-LiG~SRKsfig~l  208 (264)
T d1ad1a_         166 DPGIGFAKTRNEEAEVMARLDELVATEYPV-LLATSRKRFTKEM  208 (264)
T ss_dssp             ECCTTSSCCHHHHHHHHHCHHHHHTTCSCB-EECCTTSHHHHTT
T ss_pred             ccCcCccccchhHHHHHHHHHHhhccCCce-eeeccHHHHHHHH
Confidence                 56799999999876543   36774 4455555433333

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.08  E-value=0.057  Score=42.00  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=32.4

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++++|+|+|-+|--.+..|..+|.+++++.|.+
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            47899999999999999999999999999999864

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=93.02  E-value=0.092  Score=46.57  Aligned_cols=51  Identities=24%  Similarity=0.341  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeEE-EEe
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFD  398 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~-v~n  398 (409)
                      ++|...+++..+...+         .+++|++|+|-|.|-+|..++..|.++|++|+ |.+
T Consensus        11 g~Gv~~~~~~~~~~~~---------~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD   62 (242)
T d1v9la1          11 GFGVAVATREMAKKLW---------GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSD   62 (242)
T ss_dssp             HHHHHHHHHHHHHHHH---------SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             hHHHHHHHHHHHHHcC---------CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeec
Confidence            4677777766554322         46899999999999999999999999999754 443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.00  E-value=0.057  Score=44.55  Aligned_cols=41  Identities=22%  Similarity=0.274  Sum_probs=35.4

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCC-eEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~-~i~v~nR~~~ka~~l  407 (409)
                      .+.+++|+|+ |+.|..++..+...|+ +|+++.++++|.+.+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~   69 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA   69 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHH
Confidence            4789999995 8999999999998997 999999998876643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.99  E-value=0.045  Score=43.15  Aligned_cols=33  Identities=15%  Similarity=-0.032  Sum_probs=30.6

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++++|+|+|-.|--.|..|.++|++|+|+.|+
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            368999999999999999999999999999876

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=92.92  E-value=1.1  Score=39.41  Aligned_cols=122  Identities=22%  Similarity=0.182  Sum_probs=77.7

Q ss_pred             HHHHHhcCCCEEEEEecCCCCCCChhHHH---HHHh---cCCCcEEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEE
Q 015310           29 MYQAKAEGADVVEIRLDCINNFQPGKDLE---IILT---KKPLPVLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYV  102 (409)
Q Consensus        29 ~~~~~~~~aD~vElRlD~l~~~~~~~~l~---~l~~---~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyv  102 (409)
                      +++++..|||+|=+.+.+-.+.+ .+.++   ++.+   ..++|+++-.-+...+-..+.+.+.-....+.+.++|+|.|
T Consensus        96 ve~a~rlGadaV~~~v~~g~~~e-~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDiv  174 (251)
T d1ojxa_          96 VEEAVSLGASAVGYTIYPGSGFE-WKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAM  174 (251)
T ss_dssp             HHHHHHTTCSEEEEEECTTSTTH-HHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEE
T ss_pred             HHHHHhchhceEEEEEeCCCCch-HHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEE
Confidence            34456789999999997655432 23333   3332   35999998887653222233344444444678889999999


Q ss_pred             EEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCC
Q 015310          103 DFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGA  154 (409)
Q Consensus       103 DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~ga  154 (409)
                      =+++..+.+.+.+++.. .....++++-=  .+..+.+++.+.++.+.+.||
T Consensus       175 K~~~p~~~~~~~~~v~~-a~~~pv~~~gG--~~~~~~~~~l~~~~~a~~~Ga  223 (251)
T d1ojxa_         175 KIKYTGDPKTFSWAVKV-AGKVPVLMSGG--PKTKTEEDFLKQVEGVLEAGA  223 (251)
T ss_dssp             EECCCSSHHHHHHHHHH-TTTSCEEEECC--SCCSSHHHHHHHHHHHHHTTC
T ss_pred             EecCCCcHHHHHHHHHh-cCCCceEEeCC--CCCCCHHHHHHHHHHHHHCCC
Confidence            99998876655555422 23456666642  233456788888888778887

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.77  E-value=0.042  Score=47.32  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=36.0

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.|+++.|+|.|..|+.++..|..+|++|+.++|...+
T Consensus        41 ~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   80 (199)
T d1dxya1          41 KELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMK   80 (199)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             ccccceeeeeeecccccccccccccccceeeeccCCccch
Confidence            4678999999999999999999999999999999986543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.77  E-value=0.062  Score=45.03  Aligned_cols=41  Identities=27%  Similarity=0.301  Sum_probs=35.0

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +|.+|||.|+ ||+|.+++.-.+..|++|+.+.|+.+|.+.+
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~   70 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL   70 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHH
Confidence            5889999998 5599999888889999999999998887654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.53  E-value=0.038  Score=43.61  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .++++|+|+|-.|--.|..+.++|++|+|+.|..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4789999999999999999999999999999864

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.44  E-value=0.11  Score=45.36  Aligned_cols=37  Identities=24%  Similarity=0.256  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      .+++..+++++|||.+|-+++..|.+.|. ++++++|.
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            56788899999999999999999999998 89999985

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.06  Score=44.73  Aligned_cols=41  Identities=20%  Similarity=0.167  Sum_probs=34.4

Q ss_pred             CCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .|++|+|.|+|| .|.+++.-++..|++|+++.++.+|.+.+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~   69 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA   69 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH
Confidence            478999997655 99988888888999999999998887654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.94  E-value=0.043  Score=42.18  Aligned_cols=36  Identities=8%  Similarity=0.167  Sum_probs=29.9

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR  399 (409)
                      .+++||+|+|+|+|-+|--++..|+..+.++++..|
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~   63 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL   63 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEe
Confidence            457899999999999999999999988776554444

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.84  E-value=0.14  Score=45.76  Aligned_cols=51  Identities=24%  Similarity=0.304  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeE-EEEe
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARV-VIFD  398 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i-~v~n  398 (409)
                      ++|.+.+++..+.+.         +.+++|++++|-|.|-+|+.++..|.+.|++| .|.+
T Consensus        16 G~Gv~~~~~~~~~~~---------~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          16 GYGSVYYVEAVMKHE---------NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             HHHHHHHHHHHHHHT---------TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             hHHHHHHHHHHHHhC---------CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence            567778887766532         25789999999999999999999999999964 4544

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.032  Score=53.90  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=31.1

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      ++.+|||+|+||.|..++..|+..|+ +|+|++.+
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            45689999999999999999999999 99999875

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.75  E-value=1.9  Score=37.88  Aligned_cols=150  Identities=12%  Similarity=0.059  Sum_probs=94.4

Q ss_pred             EEEeecc--CCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310           13 ICAPLMA--QSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (409)
Q Consensus        13 icv~l~~--~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (409)
                      |=-++-.  .|.+|+.+.++++.+.+...|=++--+.      ....+.++..++.+ .|+=.-+.|-.   +-+.+..-
T Consensus        39 ID~TlL~p~~t~e~i~~lc~~A~~~~~aaVcV~P~~v------~~a~~~L~gs~v~v-~tVigFP~G~~---~~~~K~~E  108 (251)
T d1o0ya_          39 IEHTNLKPFATPDDIKKLCLEARENRFHGVCVNPCYV------KLAREELEGTDVKV-VTVVGFPLGAN---ETRTKAHE  108 (251)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHTTSCCEE-EEEESTTTCCS---CHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHHHHHHhhcCceEEEECHHHH------HHHHHHhcCCCceE-EeeccCCCCCC---cHHHHHHH
Confidence            3334443  4578888888888888777763332211      23334444455554 45433333332   44666666


Q ss_pred             HHHHHHcCCcEEEEeccCcc----------chHHHHHh-ccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           91 LHLAEDLGADYVDFELKVAS----------NILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        91 l~~~~~~g~dyvDiEl~~~~----------~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      .+.+++.|++-||+=++...          +.++.++. .+..-.|+|+-...+    +.+++....+-+.+.|||.+|-
T Consensus       109 a~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L----~~~e~~~a~~ia~~aGadfvKT  184 (251)
T d1o0ya_         109 AIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYL----DTEEKIAACVISKLAGAHFVKT  184 (251)
T ss_dssp             HHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGC----CHHHHHHHHHHHHHTTCSEEEC
T ss_pred             HHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeeccccc----CcHHHHHHHHHHHHhCcceeec
Confidence            78899999999998665421          22333342 345677899876643    4677888888889999999998


Q ss_pred             Ee----ecCCHhHHHHHHHHh
Q 015310          160 VF----SVNDITEIARIFQLL  176 (409)
Q Consensus       160 a~----~~~~~~D~~~ll~~~  176 (409)
                      .+    ...+++|+..+.+..
T Consensus       185 STGf~~~gat~e~V~~m~~~~  205 (251)
T d1o0ya_         185 STGFGTGGATAEDVHLMKWIV  205 (251)
T ss_dssp             CCSSSSCCCCHHHHHHHHHHH
T ss_pred             cCCCCCCCcCHHHHHHHHHHh
Confidence            55    356888886665543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.75  E-value=0.071  Score=42.21  Aligned_cols=34  Identities=15%  Similarity=0.215  Sum_probs=31.5

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .++++|+|+|-.|--+|..+..+|.+|+|+.|..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            4799999999999999999999999999998863

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.73  E-value=0.077  Score=44.13  Aligned_cols=41  Identities=29%  Similarity=0.292  Sum_probs=34.8

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      +|++|||.|+ ||+|.+++.-+..+|++++++.++.++.+.+
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l   66 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML   66 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccccccccc
Confidence            4789999995 9999999988888999888888888876654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.15  Score=42.72  Aligned_cols=39  Identities=26%  Similarity=0.270  Sum_probs=35.0

Q ss_pred             CCCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeCCh
Q 015310          363 GSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       363 ~~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR~~  401 (409)
                      +.+++||+++|+|.+. .||.++.-|.+.|+.|++++.+-
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t   73 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT   73 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc
Confidence            3689999999999888 99999999999999999998753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.60  E-value=0.13  Score=42.16  Aligned_cols=36  Identities=28%  Similarity=0.278  Sum_probs=31.1

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +..+++|+|||+|-+|-=.+..+.++|+ +|+++.|.
T Consensus        42 p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          42 PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             ccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            3446789999999999999989999999 79888874

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.37  E-value=0.097  Score=44.63  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=33.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++||+|+|||+|-+|-=+++.+.+.+.+++++-|+.
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            45789999999999999999999999999877776653

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.24  E-value=0.13  Score=43.38  Aligned_cols=40  Identities=25%  Similarity=0.343  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChHH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFEQ  403 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~k  403 (409)
                      ..+.++++.|+|.|..|+.++.-+..+|++|+.++|...+
T Consensus        40 ~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~   79 (184)
T d1ygya1          40 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP   79 (184)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH
T ss_pred             ccccceeeeeccccchhHHHHHHhhhccceEEeecCCCCh
Confidence            4578999999999999999999999999999999986543

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=91.15  E-value=0.074  Score=48.35  Aligned_cols=32  Identities=38%  Similarity=0.644  Sum_probs=29.6

Q ss_pred             EEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          370 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      -|+|||+|.+|.++++.|++.|.+|.|+.+..
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999998753

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=90.52  E-value=0.98  Score=37.50  Aligned_cols=108  Identities=12%  Similarity=0.031  Sum_probs=70.7

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcC-CCcEEEEeccCCCCCCCCCCHHHHH
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKK-PLPVLIVYRPKWAGGLYEGDEHKRL   88 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~-~~PiI~T~R~~~eGG~~~~~~~~~~   88 (409)
                      +|++||.+-..+.++.++-++.. ...+|++++-.+++..... +.+..+++.. +.+++...-.. +      ....  
T Consensus         1 ~p~l~vAlD~~~~~~~~~~~~~~-~~~vdiikig~~~~~~~G~-~~i~~l~~~~~~~~i~~d~k~~-d------~~~~--   69 (213)
T d1q6oa_           1 LPMLQVALDNQTMDSAYETTRLI-AEEVDIIEVGTILCVGEGV-RAVRDLKALYPHKIVLADAKIA-D------AGKI--   69 (213)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHH-GGGCSEEEECHHHHHHHCT-HHHHHHHHHCTTSEEEEEEEEC-S------CHHH--
T ss_pred             CCcEEEEecCCCHHHHHHHHHhc-CCCccEEEeCeeccccCCH-HHHHHHHHhcccccceeEEeec-c------chHH--
Confidence            58999999999999999988875 5679999999988754333 3566776654 56666654322 1      1221  


Q ss_pred             HHHHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEe
Q 015310           89 EALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVS  129 (409)
Q Consensus        89 ~ll~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S  129 (409)
                       ..+.+.+.|+|++-+=.....+.++..+ .+++.+.++.+.
T Consensus        70 -~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~  110 (213)
T d1q6oa_          70 -LSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIE  110 (213)
T ss_dssp             -HHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             -HHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecc
Confidence             2234567789999886665555444444 334455565544

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.43  E-value=0.079  Score=48.19  Aligned_cols=34  Identities=32%  Similarity=0.506  Sum_probs=30.9

Q ss_pred             CCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          367 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      +..-|+|||+|.+|.++++.+++.|.+|.|+.+.
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4567999999999999999999999999999864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.34  E-value=0.17  Score=39.19  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=31.9

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      +.++.|||+|--||..+.+..++|+++.+++.+.+
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            46899999999999999999999999999998754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.33  E-value=0.18  Score=39.65  Aligned_cols=37  Identities=11%  Similarity=0.231  Sum_probs=30.7

Q ss_pred             CCEEEEEechh-----------HHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          368 GRMFVLAGAGG-----------AGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       368 ~~~vlvlGaGG-----------aarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      .|++||||+|+           ++--++.+|.++|+++.++|-+++..
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV   51 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV   51 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh
Confidence            57899999985           45677889999999999999887643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.19  Score=42.49  Aligned_cols=39  Identities=28%  Similarity=0.388  Sum_probs=35.3

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      ..+.++++.|+|.|..|+.++.-|..+|++|+.++|+..
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          40 FEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccccceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            457899999999999999999999999999999998643

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=90.20  E-value=0.16  Score=43.18  Aligned_cols=40  Identities=28%  Similarity=0.358  Sum_probs=35.1

Q ss_pred             CCCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          363 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       363 ~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      +..+.|+++.|+|.|..|+.++.-+..+|+++..+++...
T Consensus        42 ~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          42 GEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             cceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            3567799999999999999999999999999999987543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=90.19  E-value=0.099  Score=46.51  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=29.9

Q ss_pred             CCEEEEEechhHHHHHHHHHHh-CCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKS-RGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~-~G~~i~v~nR~~  401 (409)
                      ...|+|||||.+|.++|+.|++ .|.+|+|+.+..
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            3569999999999999999987 599999999864

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.08  E-value=0.31  Score=41.76  Aligned_cols=119  Identities=21%  Similarity=0.251  Sum_probs=69.7

Q ss_pred             EEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHHH
Q 015310           13 ICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEALH   92 (409)
Q Consensus        13 icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   92 (409)
                      |...|...+.++...-++.+.+.|.+++|+.+.   ...-.+.++.+++...--+++-.=|.       .+.    +-++
T Consensus        11 iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr---~p~a~~~i~~l~~~~~~~~~vGaGTV-------~~~----~~~~   76 (202)
T d1wa3a1          11 IVAVLRANSVEEAKEKALAVFEGGVHLIEITFT---VPDADTVIKELSFLKEKGAIIGAGTV-------TSV----EQCR   76 (202)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHTTCCEEEEETT---STTHHHHHHHTHHHHHTTCEEEEESC-------CSH----HHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHcCCCEEEEecC---CccHHHHHHHHHHhcCCCcEEEeccc-------ccH----HHHH
Confidence            445588899999999999999999999999875   22223445554432211234422111       122    3356


Q ss_pred             HHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEE
Q 015310           93 LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKL  159 (409)
Q Consensus        93 ~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKi  159 (409)
                      .+++.|++++ |-=...++..+   ..++.+..+|-..    .||+  |+    .++.++|+|++|+
T Consensus        77 ~a~~aGa~fi-vsP~~~~~v~~---~~~~~~i~~iPGv----~Tps--Ei----~~A~~~G~~~lK~  129 (202)
T d1wa3a1          77 KAVESGAEFI-VSPHLDEEISQ---FCKEKGVFYMPGV----MTPT--EL----VKAMKLGHTILKL  129 (202)
T ss_dssp             HHHHHTCSEE-ECSSCCHHHHH---HHHHHTCEEECEE----CSHH--HH----HHHHHTTCCEEEE
T ss_pred             HHHhhcccEE-eCCCCcHHHHH---HHHhcCCceeCCc----CcHH--HH----HHHHHCCCCEEEe
Confidence            7889999987 22222223322   2334566666554    2553  33    3445789999996

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.92  E-value=0.14  Score=42.98  Aligned_cols=41  Identities=24%  Similarity=0.225  Sum_probs=34.4

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ++.++||.|+ ||+|.+++.-++.+|++|+.+.|+.+|.+.+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~   72 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL   72 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence            3457888875 9999999998899999999999998887654

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.90  E-value=0.11  Score=48.79  Aligned_cols=32  Identities=31%  Similarity=0.377  Sum_probs=29.0

Q ss_pred             EEEEEechhHHHHHHHHHHh------CCCeEEEEeCCh
Q 015310          370 MFVLAGAGGAGRALAFGAKS------RGARVVIFDIDF  401 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~------~G~~i~v~nR~~  401 (409)
                      -|+|+|+|.||.++|+.|++      .|.+|.|+.|..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            59999999999999999997      788999999863

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=89.78  E-value=0.1  Score=43.39  Aligned_cols=41  Identities=27%  Similarity=0.255  Sum_probs=34.7

Q ss_pred             CCCEEEEEec-hhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          367 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       367 ~~~~vlvlGa-GGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      ++.+|||-|| ||+|.+++.-.+.+|++|+...|+.+|.+.+
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~   64 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL   64 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH
Confidence            4567999995 9999999988888999988888988887765

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=89.61  E-value=0.32  Score=40.35  Aligned_cols=38  Identities=18%  Similarity=0.156  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .+++||+++|+|.+. .||.++.-|.+.|+.|++++..-
T Consensus        33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t   71 (166)
T d1b0aa1          33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT   71 (166)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC
T ss_pred             cccccceEEEEeccccccHHHHHHHHHhhcccccccccc
Confidence            678999999999888 99999999999999999998653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.39  E-value=0.2  Score=43.15  Aligned_cols=37  Identities=30%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHH--------------------hCCC-eEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAK--------------------SRGA-RVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~--------------------~~G~-~i~v~nR~  400 (409)
                      .++.+++|+|||+|-+|-=+|..|.                    +.|+ +|+++.|.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            3467899999999999988877665                    6899 89999985

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.30  E-value=0.17  Score=40.21  Aligned_cols=37  Identities=19%  Similarity=0.277  Sum_probs=31.2

Q ss_pred             CCEEEEEechh-----------HHHHHHHHHHhCCCeEEEEeCChHHH
Q 015310          368 GRMFVLAGAGG-----------AGRALAFGAKSRGARVVIFDIDFEQS  404 (409)
Q Consensus       368 ~~~vlvlGaGG-----------aarai~~aL~~~G~~i~v~nR~~~ka  404 (409)
                      .|++||||+|+           ++--++.+|.++|+++.++|-+++..
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV   54 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI   54 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh
Confidence            47999999986           46678899999999999999887653

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.09  E-value=0.14  Score=43.05  Aligned_cols=41  Identities=29%  Similarity=0.316  Sum_probs=33.1

Q ss_pred             CCEEEEEec-hhHHHHHHHHHHhCCC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGa-GGaarai~~aL~~~G~-~i~v~nR~~~ka~~la  408 (409)
                      +++|||.|| ||+|.+++.-++..|+ .|+.+.++.++...++
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~   73 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLT   73 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHH
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhh
Confidence            478999995 9999999998899999 6777777777766553

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.05  E-value=0.21  Score=43.36  Aligned_cols=38  Identities=18%  Similarity=0.060  Sum_probs=32.5

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHh--------------------CCC-eEEEEeCCh
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKS--------------------RGA-RVVIFDIDF  401 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~--------------------~G~-~i~v~nR~~  401 (409)
                      .++.+++|+|||+|-+|-=++..|.+                    .|+ +|+++.|..
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            45679999999999999998887776                    698 899999863

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=88.79  E-value=0.23  Score=41.87  Aligned_cols=37  Identities=16%  Similarity=0.015  Sum_probs=34.2

Q ss_pred             CCCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..+.++++.|+|.|..|++++..|..+|++|..++|.
T Consensus        40 ~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~   76 (188)
T d2naca1          40 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRH   76 (188)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSS
T ss_pred             eeccccceeeccccccchhhhhhhhccCceEEEEeec
Confidence            4678999999999999999999999999999999985

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.34  E-value=0.15  Score=42.75  Aligned_cols=42  Identities=19%  Similarity=0.132  Sum_probs=34.6

Q ss_pred             CCCCEEEEEe-chhHHHHHHHHHHhCCCeEEEEeCChHHHHhh
Q 015310          366 LAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFEQSLLL  407 (409)
Q Consensus       366 ~~~~~vlvlG-aGGaarai~~aL~~~G~~i~v~nR~~~ka~~l  407 (409)
                      .+|.+|||.| +||+|.+++.-+..+|++|+...++++|.+.+
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~   72 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL   72 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHH
Confidence            3578999999 58899999888889999988888887776543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=88.28  E-value=0.15  Score=36.98  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=30.9

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      |++.|+|+|--||..+.+...+|+++.+++-+.+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5899999999999999999999999999987643

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.59  E-value=0.6  Score=42.21  Aligned_cols=59  Identities=17%  Similarity=0.231  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHhCCCeE-EEEe
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARV-VIFD  398 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~~G~~i-~v~n  398 (409)
                      ++|.+.+++..+...+.... ---..+++|++|+|-|-|-+|+.++..|.++|++| .|.+
T Consensus         8 G~GV~~~~~~~l~~~~~~~~-~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1           8 GRGVFHGIENFIENASYMSI-LGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             HHHHHHHHHHHHTCHHHHHH-HTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcccchh-ccCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence            46777777765531100000 00013688999999999999999999999999965 4443

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.56  E-value=0.34  Score=36.03  Aligned_cols=30  Identities=20%  Similarity=0.378  Sum_probs=26.6

Q ss_pred             EEEEEechhHHHHHHHHHHhCCCeEEEEeC
Q 015310          370 MFVLAGAGGAGRALAFGAKSRGARVVIFDI  399 (409)
Q Consensus       370 ~vlvlGaGGaarai~~aL~~~G~~i~v~nR  399 (409)
                      +|||+|+||---|+++.|.+...+|+++.=
T Consensus         2 kVLviGsGgREHAia~~l~~s~~~v~~~pG   31 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAKQGYEVHFYPG   31 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCeEEEecC
Confidence            699999999999999999988778888743

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.35  E-value=0.39  Score=40.05  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=32.9

Q ss_pred             CCCCCCEEEEEechh-HHHHHHHHHHhCCCeEEEEeCC
Q 015310          364 SPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       364 ~~~~~~~vlvlGaGG-aarai~~aL~~~G~~i~v~nR~  400 (409)
                      .+++||+++|+|-+. +||.++.-|.+.|+.|++++.+
T Consensus        25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~   62 (171)
T d1edza1          25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN   62 (171)
T ss_dssp             CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence            479999999999876 7999999999999999988754

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.16  E-value=2.9  Score=35.67  Aligned_cols=62  Identities=15%  Similarity=0.149  Sum_probs=43.7

Q ss_pred             eeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEe-cC--CCCCCC-hhHHHHHHhcCCCcEEEEec
Q 015310           11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRL-DC--INNFQP-GKDLEIILTKKPLPVLIVYR   72 (409)
Q Consensus        11 ~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRl-D~--l~~~~~-~~~l~~l~~~~~~PiI~T~R   72 (409)
                      .+|+.+|...+..++.++++++.+.|+|.+-+-+ |-  .++..- .+.++.+++.+++|+=+++=
T Consensus         2 ~kIspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~~~i~~i~~~t~~~~dvHLM   67 (217)
T d2flia1           2 LKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLM   67 (217)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEE
T ss_pred             cEEEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCccccCHHHHHHHHhcCCCceEeEEE
Confidence            5799999999999999999998888999998743 31  122211 24566666666777666654

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.16  E-value=3.9  Score=34.34  Aligned_cols=153  Identities=9%  Similarity=0.044  Sum_probs=95.6

Q ss_pred             eeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHH
Q 015310           11 TMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEA   90 (409)
Q Consensus        11 ~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~l   90 (409)
                      .+||+.+-.++.+++++-+++. ...+|++|.-.+++..... +.++++++..+.|++.=.... +     .....+ ..
T Consensus         3 ~ki~lAlD~~~~~~a~~l~~~~-~~~v~~iKig~~l~~~~G~-~~v~~l~~~~~~~i~~D~K~~-D-----Ig~t~~-~~   73 (212)
T d1km4a_           3 NRLILAMDLMNRDDALRVTGEV-REYIDTVKIGYPLVLSEGM-DIIAEFRKRFGCRIIADFAVA-D-----IPETNE-KI   73 (212)
T ss_dssp             GGEEEEECCSSHHHHHHHHHHH-TTTCSEEEEEHHHHHHHCT-HHHHHHHHHHCCEEEEEEEEC-S-----CHHHHH-HH
T ss_pred             CCeEEEecCCCHHHHHHHHHHh-CCCCcEEEECHHHHHhcCH-HHHHHHHHhcccceehhhhhh-c-----cccHHH-Hh
Confidence            4599999999999999988875 5668999999998865433 356677666678877655432 2     222222 33


Q ss_pred             HHHHHHcCCcEEEEeccCccchHHHHH-hccCCCcEEEEeccCCCCCCCH-----hHHHHHHHHHHHcCCCEEEEEeecC
Q 015310           91 LHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSE-----EDLGYLVSRMQATGADIIKLVFSVN  164 (409)
Q Consensus        91 l~~~~~~g~dyvDiEl~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~-----~~l~~~~~~~~~~gaDivKia~~~~  164 (409)
                      .+.+.+.|+|++-|=-....+-++..+ .+++.+.++++-.+.  ..++.     +...+..+...+.|.+  -+++...
T Consensus        74 ~~~~~~~gad~~TVh~~~g~~~i~~~~~~a~~~~~~~~~l~~~--s~~~~~~~~~~~~~~~~~~~~~~g~~--g~v~~~~  149 (212)
T d1km4a_          74 CRATFKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEM--SHPGAEMFIQGAADEIARMGVDLGVK--NYVGPST  149 (212)
T ss_dssp             HHHHHHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECSC--SSGGGGTTHHHHHHHHHHHHHHHTCC--EEECCTT
T ss_pred             HhhhccccccEEEEeccCChHHHHHHHHHHHhcCCccccchhh--cchhhhhhhhhHHHHHHHHHHHhCCc--ccccccc
Confidence            456678899999998777766666555 233334455442221  11221     1233334444556644  4567777


Q ss_pred             CHhHHHHHHHHh
Q 015310          165 DITEIARIFQLL  176 (409)
Q Consensus       165 ~~~D~~~ll~~~  176 (409)
                      ++++...+-+..
T Consensus       150 ~~~~i~~ir~~~  161 (212)
T d1km4a_         150 RPERLSRLREII  161 (212)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHhhhhhcc
Confidence            788776665544

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.12  E-value=0.14  Score=46.30  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=29.7

Q ss_pred             CCEEEEEechhHHHHHHHHHHhC--CCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~--G~~i~v~nR~~  401 (409)
                      ++.|+|+|+|.+|.++++.|++.  |.+|+|+.+..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            45699999999999999999864  78999998864

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.09  E-value=0.3  Score=44.78  Aligned_cols=41  Identities=12%  Similarity=0.152  Sum_probs=35.9

Q ss_pred             CCEEEEEechhHHHHHHHHHHh-CCC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~-~G~-~i~v~nR~~~ka~~la  408 (409)
                      .+++.|+|+|.-||.-+.+|.. ... +|.|++|+.+++++++
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~  167 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFV  167 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHH
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHH
Confidence            4689999999999999999876 456 8999999999998875

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.54  E-value=0.75  Score=40.14  Aligned_cols=51  Identities=20%  Similarity=0.188  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHH-hCCCeEE-EEe
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK-SRGARVV-IFD  398 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~-~~G~~i~-v~n  398 (409)
                      ++|...+++..+...         +.++++++++|-|.|-+|+.++..|. +.|++|+ +.+
T Consensus        11 g~Gv~~~~~~~~~~~---------~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          11 GRGVKVCAGLAMDVL---------GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             HHHHHHHHHHHHHHT---------TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             hHHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeec
Confidence            467777777665432         25689999999999999999999996 5699644 443

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.26  E-value=0.92  Score=40.29  Aligned_cols=103  Identities=18%  Similarity=0.205  Sum_probs=62.9

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccC--cc-------chHHHH---H-hccCCCcEEEEeccCCCCCCCH
Q 015310           73 PKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKV--AS-------NILGKQ---Y-SSHQSGTRFIVSCNLDCETPSE  139 (409)
Q Consensus        73 ~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~--~~-------~~~~~l---~-~~~~~~~kiI~S~H~f~~tp~~  139 (409)
                      +-.+||.+. +.+.-++..+..++.|+|+|||=-.+  +.       +-++++   + ..+  +.++++|.=.+    . 
T Consensus        15 SFsdgg~~~-~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~is~~eE~~Rl~pvi~~l~--~~~~~iSIDT~----~-   86 (264)
T d1ad1a_          15 SFSDGGKFN-NVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIV--GFDVKISVDTF----R-   86 (264)
T ss_dssp             GCSSTTTTC-SHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCCCCHHHHHHHHHHHHHHHT--TSSSEEEEECS----C-
T ss_pred             CCCCCCcCC-CHHHHHHHHHHHHHCCCCEEEECCccCCCCCCcCCHHHHHHhhhhHhhhhc--ccCcccchhhh----h-
Confidence            447889864 45666667788889999999993332  21       111222   2 222  23567776432    2 


Q ss_pred             hHHHHHHHHHHHcCCCEEEEEeecCCHhHHHHHHHHhccCCCCEEEEEcC
Q 015310          140 EDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG  189 (409)
Q Consensus       140 ~~l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG  189 (409)
                         -+..+.+.+.|+||+==+..-....   +++++..+.+.|+|.|-|+
T Consensus        87 ---~eVa~~al~~Ga~iINDVs~g~~d~---~~~~~va~~~~~~ilmH~~  130 (264)
T d1ad1a_          87 ---SEVAEACLKLGVDIINDQWAGLYDH---RMFQVVAKYDAEIVLMHNG  130 (264)
T ss_dssp             ---HHHHHHHHHTTCCEEEETTTTSSCT---HHHHHHHHTTCEEEEECCC
T ss_pred             ---HHHHHHHHhcCCcEeeccccccccc---cHHHHHhhcCcceeeeeec
Confidence               2345667788999887543322222   3566677778999999874

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=86.02  E-value=3.1  Score=37.09  Aligned_cols=162  Identities=14%  Similarity=0.254  Sum_probs=96.5

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEEecCCC----CCCChhHHHHHH---hc--CCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           21 SVEQVLSNMYQAKAEGADVVEIRLDCIN----NFQPGKDLEIIL---TK--KPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        21 ~~~e~~~~~~~~~~~~aD~vElRlD~l~----~~~~~~~l~~l~---~~--~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      +.++++++++.....|||+|.+=--.-.    ..+..+++.++.   +.  ...++++.+=|            .+-+..
T Consensus        36 ~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~vs~eeE~~Rl~pvi~~l~~~~~~~iSIDT------------~~~eVa  103 (282)
T d1ajza_          36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDT------------SKPEVI  103 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC------------CCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccccccccCCcHHHHHHHHHHHHHHHhhcccceEEEEe------------cChHHH
Confidence            4577889999999999999976554322    122234454432   11  12233445543            344678


Q ss_pred             HHHHHcCCcEE-EEeccCccchHHHHHhccCCCcEEEEeccCC-----CCCCC--------HhHHHHHHHHHHHcCCCEE
Q 015310           92 HLAEDLGADYV-DFELKVASNILGKQYSSHQSGTRFIVSCNLD-----CETPS--------EEDLGYLVSRMQATGADII  157 (409)
Q Consensus        92 ~~~~~~g~dyv-DiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f-----~~tp~--------~~~l~~~~~~~~~~gaDiv  157 (409)
                      +.|++.|+++| ||.=...++.++ ++.  +.+..+|+.|+.-     +..|.        .+.+.+.++.+.+.|-+-=
T Consensus       104 ~~al~~Ga~iINDvsg~~~~~~~~-~va--~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~~~  180 (282)
T d1ajza_         104 RESAKVGAHIINDIRSLSEPGALE-AAA--ETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKE  180 (282)
T ss_dssp             HHHHHTTCCEECCTTTTCSTTHHH-HHH--HHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHhcCceEEechhhcccchhHH-Hhh--ccCceEEEeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCcHh
Confidence            89999999987 444222333333 322  2467788876531     11221        1235666777888885434


Q ss_pred             EEEee-----cCCHhHHHHHHHHhccC---CCCEEEEEcCccchhhhhh
Q 015310          158 KLVFS-----VNDITEIARIFQLLSHC---QVPIIAYSVGERGLVSQLL  198 (409)
Q Consensus       158 Kia~~-----~~~~~D~~~ll~~~~~~---~~p~i~~~MG~~G~~SRi~  198 (409)
                      +|++=     .++.++++.|++-+...   +.|+ .++.....-+..++
T Consensus       181 ~IilDPGiGFgK~~~~n~~ll~~l~~~~~~~~Pi-LvG~SRKsfi~~~~  228 (282)
T d1ajza_         181 KLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPL-LVGMSRKSMIGQLL  228 (282)
T ss_dssp             GEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB-EECCTTCHHHHHHH
T ss_pred             hEecCCCcCcCCChhhhHHHHhhcchhhccccce-EEeccHHHHHHHHh
Confidence            56654     46899999998876554   6675 55666666566555

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.94  E-value=0.35  Score=38.33  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=28.0

Q ss_pred             CCEEEEEechhHHHHHHHHHH----hCCCeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAK----SRGARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~----~~G~~i~v~nR~  400 (409)
                      .++++|+|+|.+|--++.+|.    ++|.+|+++.+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccc
Confidence            579999999999988888885    468899998875

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.82  E-value=0.37  Score=36.91  Aligned_cols=34  Identities=18%  Similarity=0.036  Sum_probs=27.8

Q ss_pred             CCEEEEEechhHHHHHHHHHHh---CCCeEEEEeCCh
Q 015310          368 GRMFVLAGAGGAGRALAFGAKS---RGARVVIFDIDF  401 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~---~G~~i~v~nR~~  401 (409)
                      .++++|+|+|-+|--.+..|..   +|.+|+++.|..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            4799999999999988876554   477999998863

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=85.71  E-value=0.36  Score=44.72  Aligned_cols=41  Identities=24%  Similarity=0.356  Sum_probs=35.4

Q ss_pred             CCEEEEEechhHHHHHHHHHH-hCCC-eEEEEeCChHHHHhhh
Q 015310          368 GRMFVLAGAGGAGRALAFGAK-SRGA-RVVIFDIDFEQSLLLL  408 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~-~~G~-~i~v~nR~~~ka~~la  408 (409)
                      .+++.|+|+|.-|+.-+.++. -.+. +|+|++|+++++++++
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~  170 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLI  170 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHH
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHH
Confidence            478999999999998888875 4578 8999999999988775

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.22  E-value=1.8  Score=39.48  Aligned_cols=92  Identities=17%  Similarity=0.127  Sum_probs=56.6

Q ss_pred             eeccCCHHHH----HHHHHHHHhcCCCEEEEEecC-------CC---CC-CC-------------hhHHHHHHhcCCCcE
Q 015310           16 PLMAQSVEQV----LSNMYQAKAEGADVVEIRLDC-------IN---NF-QP-------------GKDLEIILTKKPLPV   67 (409)
Q Consensus        16 ~l~~~~~~e~----~~~~~~~~~~~aD~vElRlD~-------l~---~~-~~-------------~~~l~~l~~~~~~Pi   67 (409)
                      .++....+++    ...++++.+.|.|.||+-.-.       |.   +. ++             .+.+..+++....++
T Consensus       130 ~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~  209 (330)
T d1ps9a1         130 ELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDF  209 (330)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCc
Confidence            4444444443    445666678999999998863       11   11 11             134445555555556


Q ss_pred             EEEeccCC-CCCCCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015310           68 LIVYRPKW-AGGLYEGDEHKRLEALHLAEDLGADYVDFELK  107 (409)
Q Consensus        68 I~T~R~~~-eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~  107 (409)
                      ++.+|-.. |.-....+.++-.++.+.+.+.|+|++++-..
T Consensus       210 ~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g  250 (330)
T d1ps9a1         210 IIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIG  250 (330)
T ss_dssp             EEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred             eeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccc
Confidence            66667442 22222236788888999988899999998554

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.19  E-value=0.49  Score=37.96  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=30.4

Q ss_pred             CCCEEEEE--echhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLA--GAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvl--GaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      .++.++|+  |+|-.|-.++..|+++|++|+|+.|..
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            36778887  777799999999999999999999874

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.14  E-value=0.37  Score=42.64  Aligned_cols=37  Identities=24%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             EEEEechhHHHHHHHHHHhCCCeEEEEeCC-hHHHHhh
Q 015310          371 FVLAGAGGAGRALAFGAKSRGARVVIFDID-FEQSLLL  407 (409)
Q Consensus       371 vlvlGaGGaarai~~aL~~~G~~i~v~nR~-~~ka~~l  407 (409)
                      ++-=|++|.|++++..|++.|++|++..|+ .+.++++
T Consensus        22 lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          22 LVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             EETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             EEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            333378999999999999999999998776 4555544

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=84.90  E-value=0.39  Score=37.66  Aligned_cols=36  Identities=11%  Similarity=0.092  Sum_probs=31.4

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCCh
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~~  401 (409)
                      ++||+|+|+|.|-.|--.+-.|.+...+|+++-|..
T Consensus        25 ~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          25 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            589999999999999888888888766999998863

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.78  E-value=5.2  Score=35.16  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=75.7

Q ss_pred             EEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHHhc-CCCcEEEEe
Q 015310           14 CAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTK-KPLPVLIVY   71 (409)
Q Consensus        14 cv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~~~-~~~PiI~T~   71 (409)
                      -++.-.|+.+...+-++.+.+.|||++|+=+-+-++..+.                     +.++.+++. .+.|+++-.
T Consensus        22 y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~  101 (267)
T d1qopa_          22 FVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLM  101 (267)
T ss_dssp             EEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEE
T ss_pred             EEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEe
Confidence            3456678899888888888889999999999877655331                     223334444 367876553


Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHH
Q 015310           72 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQA  151 (409)
Q Consensus        72 R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~  151 (409)
                      -...   .+....   -++++.+.+.|++-+-|                        -  |   -| .||..+..+.+.+
T Consensus       102 Y~N~---i~~~G~---~~f~~~~~~~Gv~Glii------------------------p--D---lP-~ee~~~~~~~~~~  145 (267)
T d1qopa_         102 YANL---VFNNGI---DAFYARCEQVGVDSVLV------------------------A--D---VP-VEESAPFRQAALR  145 (267)
T ss_dssp             CHHH---HHTTCH---HHHHHHHHHHTCCEEEE------------------------T--T---CC-GGGCHHHHHHHHH
T ss_pred             eccc---hhhcCc---hHHHHHHHhcCCCceec------------------------c--c---hh-hhhhHHHHHhhhc
Confidence            2110   001111   24455666666665443                        1  1   12 2444556667778


Q ss_pred             cCCCEEEEEeecCCHhHHHHHHHHh
Q 015310          152 TGADIIKLVFSVNDITEIARIFQLL  176 (409)
Q Consensus       152 ~gaDivKia~~~~~~~D~~~ll~~~  176 (409)
                      .|.+.+.++....+.+-..++.+..
T Consensus       146 ~~l~~I~lvaPtt~~~Ri~~i~~~a  170 (267)
T d1qopa_         146 HNIAPIFICPPNADDDLLRQVASYG  170 (267)
T ss_dssp             TTCEEECEECTTCCHHHHHHHHHHC
T ss_pred             cCceEEEEecccccHHHHHHHHhhC
Confidence            8888887776666666565555543

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.70  E-value=0.37  Score=43.71  Aligned_cols=32  Identities=22%  Similarity=0.370  Sum_probs=27.0

Q ss_pred             CEEEEEechhHHHHHHHHHHh----CCCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKS----RGARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~----~G~~i~v~nR~  400 (409)
                      .-|||||+|.+|.+++..+++    .|.+|.|+.+.
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            359999999999999888864    68899999864

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.56  E-value=1.4  Score=38.32  Aligned_cols=53  Identities=28%  Similarity=0.335  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCCCCCCCCEEEEEechhHHHHHHHHHHh-CCCe-EEEEeC
Q 015310          339 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGAR-VVIFDI  399 (409)
Q Consensus       339 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~~~vlvlGaGGaarai~~aL~~-~G~~-i~v~nR  399 (409)
                      ++|...+++..+...+        ..+++|++++|-|-|-+|..++..|.+ .|++ |.+.+.
T Consensus        11 g~Gv~~~~~~~~~~~g--------~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          11 ARGASYTIREAAKVLG--------WDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             HHHHHHHHHHHHHHTT--------CSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             hHHHHHHHHHHHHHhC--------CCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeecccc
Confidence            5677777777665322        135899999999999999999988875 6885 556553

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=84.38  E-value=2.5  Score=38.52  Aligned_cols=92  Identities=16%  Similarity=0.163  Sum_probs=57.7

Q ss_pred             EeeccCCHHH----HHHHHHHHHhcCCCEEEEEec--CC-----C---CC-CC-------------hhHHHHHHhcCCCc
Q 015310           15 APLMAQSVEQ----VLSNMYQAKAEGADVVEIRLD--CI-----N---NF-QP-------------GKDLEIILTKKPLP   66 (409)
Q Consensus        15 v~l~~~~~~e----~~~~~~~~~~~~aD~vElRlD--~l-----~---~~-~~-------------~~~l~~l~~~~~~P   66 (409)
                      ..++...+++    +...++++.+.|.|.||+-.=  ||     .   +. ++             .+.++.+++..+.|
T Consensus       131 ~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~  210 (337)
T d1z41a1         131 VEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGP  210 (337)
T ss_dssp             EECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhccc
Confidence            3455555544    444566667899999999863  22     1   11 11             13445555666889


Q ss_pred             EEEEeccCCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecc
Q 015310           67 VLIVYRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELK  107 (409)
Q Consensus        67 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~dyvDiEl~  107 (409)
                      +++.++.. +.-....+.++..++.+.+.+.|+|++++-..
T Consensus       211 ~~vr~~~~-~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g  250 (337)
T d1z41a1         211 LFVRVSAS-DYTDKGLDIADHIGFAKWMKEQGVDLIDCSSG  250 (337)
T ss_dssp             EEEEEECC-CCSTTSCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ceEEeccc-ccccCccchhhhHHHHHHHHHcCCcccccccc
Confidence            98766643 21122246788888999999999999998544

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.24  E-value=10  Score=32.79  Aligned_cols=122  Identities=11%  Similarity=0.039  Sum_probs=71.8

Q ss_pred             EeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCCCh---------------------hHHHHHHhcCCCcEEEEecc
Q 015310           15 APLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQPG---------------------KDLEIILTKKPLPVLIVYRP   73 (409)
Q Consensus        15 v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~---------------------~~l~~l~~~~~~PiI~T~R~   73 (409)
                      ++.-.|+.+..++.++.. ..|||++|+=+-+-+...+.                     +.++++++..+.|+|+-.--
T Consensus        11 ~taG~P~~~~s~~~l~~l-~~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~   89 (248)
T d1geqa_          11 LTAGDPDKQSTLNFLLAL-DEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYY   89 (248)
T ss_dssp             EETTSSCHHHHHHHHHHH-GGGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECH
T ss_pred             EcCcCCCHHHHHHHHHHH-HcCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEecc
Confidence            456678888888777664 66999999999877655431                     23334445557785543221


Q ss_pred             CCCCCCCCCCHHH--HHHHHHHHHHcCCcEEEEeccCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHH
Q 015310           74 KWAGGLYEGDEHK--RLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQA  151 (409)
Q Consensus        74 ~~eGG~~~~~~~~--~~~ll~~~~~~g~dyvDiEl~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~  151 (409)
                      .        .--.  ..++++.+.+.|++-+.+=                          |   -| .||..++...+++
T Consensus        90 N--------~i~~~G~~~f~~~~~~~Gv~Gliip--------------------------D---LP-~eE~~~~~~~~~~  131 (248)
T d1geqa_          90 N--------PIYRAGVRNFLAEAKASGVDGILVV--------------------------D---LP-VFHAKEFTEIARE  131 (248)
T ss_dssp             H--------HHHHHCHHHHHHHHHHHTCCEEEET--------------------------T---CC-GGGHHHHHHHHHH
T ss_pred             c--------cccccCHHHHhhhhcccCeeEEecc--------------------------C---Cc-HHHHHHHHhhccc
Confidence            0        0011  2355666666666555431                          1   11 3556666777777


Q ss_pred             cCCCEEEEEeecCCHhHHHHHHHH
Q 015310          152 TGADIIKLVFSVNDITEIARIFQL  175 (409)
Q Consensus       152 ~gaDivKia~~~~~~~D~~~ll~~  175 (409)
                      .|-+.+.++....+.+...++.+.
T Consensus       132 ~gl~~I~lvaPtt~~~ri~~i~~~  155 (248)
T d1geqa_         132 EGIKTVFLAAPNTPDERLKVIDDM  155 (248)
T ss_dssp             HTCEEEEEECTTCCHHHHHHHHHH
T ss_pred             cCcceEEEecccchhHHHHHHHhc
Confidence            787888777665555555444444

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.11  E-value=0.45  Score=37.29  Aligned_cols=36  Identities=17%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          365 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       365 ~~~~~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      .++||+|+|+|.|-.|--.+-.|.+..-+|+++.|.
T Consensus        27 ~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~   62 (126)
T d1fl2a2          27 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA   62 (126)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSS
T ss_pred             hcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecc
Confidence            468999999999998888888898885599999875

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.03  E-value=0.22  Score=49.11  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=31.4

Q ss_pred             CCCCEEEEEechhHHHHHHHHHHhCCC-eEEEEeCC
Q 015310          366 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  400 (409)
Q Consensus       366 ~~~~~vlvlGaGGaarai~~aL~~~G~-~i~v~nR~  400 (409)
                      +++.+|+|+|+||.|.-++..|...|+ +++|++.+
T Consensus        23 L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          23 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             HHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            345789999999999999999999999 99999765

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.86  E-value=8.8  Score=33.57  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=64.0

Q ss_pred             CCHHHHHHHHHHHHHcCCcEEEE-----eccCc--cc---hHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHH
Q 015310           82 GDEHKRLEALHLAEDLGADYVDF-----ELKVA--SN---ILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQA  151 (409)
Q Consensus        82 ~~~~~~~~ll~~~~~~g~dyvDi-----El~~~--~~---~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~  151 (409)
                      .+.+...++++..++.|++.+=+     |...-  ++   .++.......+.+.+|+..    ..++.++..++.+.+++
T Consensus        25 iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~----~~~s~~~~i~~a~~a~~  100 (296)
T d1xxxa1          25 LDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGA----GTYDTAHSIRLAKACAA  100 (296)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEEC----CCSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEecc----ccchhHHHHHHHHHHHH
Confidence            45566666666666666665544     22211  11   1111122334667777663    35678899999999999


Q ss_pred             cCCCEEEEEeecC----CHhHHHHHHHHhcc-CCCCEEEEEcC
Q 015310          152 TGADIIKLVFSVN----DITEIARIFQLLSH-CQVPIIAYSVG  189 (409)
Q Consensus       152 ~gaDivKia~~~~----~~~D~~~ll~~~~~-~~~p~i~~~MG  189 (409)
                      .|+|-+ ++..|.    +.+++...++...+ .+.|++.++.-
T Consensus       101 ~Gad~v-~i~~P~~~~~~~~~l~~~~~~v~~~~~~pi~lYn~p  142 (296)
T d1xxxa1         101 EGAHGL-LVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIP  142 (296)
T ss_dssp             HTCSEE-EEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECH
T ss_pred             hcCCeE-EEEeccCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            999988 444442    56777766666544 48899988764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=83.84  E-value=0.48  Score=39.52  Aligned_cols=36  Identities=14%  Similarity=0.132  Sum_probs=27.9

Q ss_pred             CCCEEEEE--echhHHHHHHHHHHhCCCeEEEEeCChH
Q 015310          367 AGRMFVLA--GAGGAGRALAFGAKSRGARVVIFDIDFE  402 (409)
Q Consensus       367 ~~~~vlvl--GaGGaarai~~aL~~~G~~i~v~nR~~~  402 (409)
                      +|.+++|+  |+||.|.+++.-.+.+|++++.+.|+.+
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~   65 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP   65 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEeccc
Confidence            46789998  5688999999888889997666555543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.78  E-value=0.48  Score=36.37  Aligned_cols=33  Identities=15%  Similarity=0.022  Sum_probs=28.0

Q ss_pred             CCEEEEEechhHHHHHHHHHHhCC---CeEEEEeCC
Q 015310          368 GRMFVLAGAGGAGRALAFGAKSRG---ARVVIFDID  400 (409)
Q Consensus       368 ~~~vlvlGaGGaarai~~aL~~~G---~~i~v~nR~  400 (409)
                      .++++|+|+|.+|--.+..+..+|   .+|+++.|.
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~   55 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRG   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEecc
Confidence            479999999999999998887766   379999875

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=83.63  E-value=0.42  Score=35.80  Aligned_cols=35  Identities=26%  Similarity=0.158  Sum_probs=30.3

Q ss_pred             CCCEEEEEechhHHHHH-HHHHHhCCCeEEEEeCCh
Q 015310          367 AGRMFVLAGAGGAGRAL-AFGAKSRGARVVIFDIDF  401 (409)
Q Consensus       367 ~~~~vlvlGaGGaarai-~~aL~~~G~~i~v~nR~~  401 (409)
                      +.+++.++|-||+|-+. |..|.++|++|+-.++..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            46899999999999666 788999999999999863

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

Probab=83.61  E-value=13  Score=32.10  Aligned_cols=201  Identities=14%  Similarity=0.084  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEEecC-------C--CC-CCChhHHHHHHhcCCCcEEEEeccCCCCCCCCCCHHHHHHHH
Q 015310           22 VEQVLSNMYQAKAEGADVVEIRLDC-------I--NN-FQPGKDLEIILTKKPLPVLIVYRPKWAGGLYEGDEHKRLEAL   91 (409)
Q Consensus        22 ~~e~~~~~~~~~~~~aD~vElRlD~-------l--~~-~~~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll   91 (409)
                      .++.++-++.+.+.|.|.||+=---       .  .. ..+.+.+..+....+..-|..+...   |.  ..    .+.+
T Consensus        28 ~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~~---~~--~~----~~~~   98 (289)
T d1nvma2          28 LDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLP---GI--GS----VHDL   98 (289)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECB---TT--BC----HHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhHHHHHHhh---hh--hh----HHHH
Confidence            4555666677777899999973110       0  00 0112333444443444444333211   11  11    2234


Q ss_pred             HHHHHcCCcEEEEec--cCccchHHHHHhccCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC--CHh
Q 015310           92 HLAEDLGADYVDFEL--KVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN--DIT  167 (409)
Q Consensus        92 ~~~~~~g~dyvDiEl--~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~--~~~  167 (409)
                      ..+.+.+++.+-+=.  +......+.+..+++.+..++...=+...+| .+.+.+.++.+.++|+|++-++=+.-  ++.
T Consensus        99 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~I~l~DT~G~~~P~  177 (289)
T d1nvma2          99 KNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIP-AEKLAEQGKLMESYGATCIYMADSGGAMSMN  177 (289)
T ss_dssp             HHHHHHTCCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSC-HHHHHHHHHHHHHHTCSEEEEECTTCCCCHH
T ss_pred             HHHHHhcccceEEEeehhhhhhHhHHHHHHHHhCCceeeEeeeccccC-chhhhHHHHhhccccceeeeecchhhcccch
Confidence            556667777665532  2222222222234445667776665544444 56788999999999999988875544  478


Q ss_pred             HHHHHHHHhccC-CCC-EEEEEc---CccchhhhhhcCCCCCccccccCCC-CCCCCCCCHHHHHhhhhhc
Q 015310          168 EIARIFQLLSHC-QVP-IIAYSV---GERGLVSQLLSPKFNGALVYGSLKG-TPVLGLPTVESLRQTYKVE  232 (409)
Q Consensus       168 D~~~ll~~~~~~-~~p-~i~~~M---G~~G~~SRi~~~~~Gs~ltf~~l~~-~sAPGQ~~~~~l~~~~~~~  232 (409)
                      ++.++++.+.+. ... .+.+-.   =.++...=+.+-..|-...=+++.. +-.||+.+.+++...++..
T Consensus       178 ~v~~~v~~l~~~~~~~~~i~~H~Hn~~g~a~an~l~A~~~G~~~id~si~GlG~~~GN~~tE~lv~~l~~~  248 (289)
T d1nvma2         178 DIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGAGAGNAPLEVFIAVAERL  248 (289)
T ss_dssp             HHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcccccceeeechHHHHHHHHHHHHHHhCCcEeeccccccCCCCCCccHHHHHHHHHhc
Confidence            888888876542 211 233311   0112222223333343333333322 3458999988887666433

>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein Lmo2234
species: Listeria monocytogenes [TaxId: 1639]

Probab=83.53  E-value=11  Score=32.04  Aligned_cols=82  Identities=21%  Similarity=0.312  Sum_probs=44.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEecCCCC----CCChhHHHHHHhcCCCcEE-EEeccCCCCCCCCCCHH----HHHHH
Q 015310           20 QSVEQVLSNMYQAKAEGADVVEIRLDCINN----FQPGKDLEIILTKKPLPVL-IVYRPKWAGGLYEGDEH----KRLEA   90 (409)
Q Consensus        20 ~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~~~~~~l~~l~~~~~~PiI-~T~R~~~eGG~~~~~~~----~~~~l   90 (409)
                      -+.+|.++   .+.+.|.|.||++.+.+.+    ....+.+.++++..++++. +++-....  .-+...+    .-.+.
T Consensus        15 ~~lee~l~---~aa~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~--~~~~~~~~~~~~~~~~   89 (275)
T d2g0wa1          15 VSFPKRVK---VAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTEVEYITQWG--TAEDRTAEQQKKEQTT   89 (275)
T ss_dssp             SCHHHHHH---HHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEECBCCCS--STTTCCHHHHHHHHHH
T ss_pred             CCHHHHHH---HHHHhCCCEEEEccccccccccCcCCHHHHHHHHHHcCCceEEEeeccccC--CCchhHHHHHHHHHHH
Confidence            45666654   4456799999999864432    1223567777777788764 33321111  1111112    22344


Q ss_pred             HHHHHHcCCcEEEEec
Q 015310           91 LHLAEDLGADYVDFEL  106 (409)
Q Consensus        91 l~~~~~~g~dyvDiEl  106 (409)
                      ++.+-.+|+.+|-+..
T Consensus        90 i~~A~~lG~~~v~~~~  105 (275)
T d2g0wa1          90 FHMARLFGVKHINCGL  105 (275)
T ss_dssp             HHHHHHHTCCEEEECC
T ss_pred             HHHHHHhCCceEecCC
Confidence            5555666777766544

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.86  E-value=6.9  Score=34.16  Aligned_cols=64  Identities=22%  Similarity=0.268  Sum_probs=47.1

Q ss_pred             cCCCcEEEEeccCCCCCCCHhHHHHHHHHHHHcCCCEEEEEeecC----CHhHHHHHHHHhcc-CCCCEEEEEc
Q 015310          120 HQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVN----DITEIARIFQLLSH-CQVPIIAYSV  188 (409)
Q Consensus       120 ~~~~~kiI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~~~----~~~D~~~ll~~~~~-~~~p~i~~~M  188 (409)
                      ..+++.+|+..    .+.+.++..++.+.+++.|||-+= +..|-    +.+++...++...+ .+.|++.++.
T Consensus        67 ~~~~~~vi~gv----~~~st~~ai~~a~~A~~~Gad~v~-v~pP~y~~~s~~~i~~~~~~ia~a~~~pi~iYn~  135 (295)
T d1o5ka_          67 VDGKIPVIVGA----GTNSTEKTLKLVKQAEKLGANGVL-VVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNV  135 (295)
T ss_dssp             HTTSSCEEEEC----CCSCHHHHHHHHHHHHHHTCSEEE-EECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred             cccCCceEeec----ccccHHHHHHHHHHHHHcCCCEEE-EeCCCCCCCCHHHHHHHHHHHHhccCCCeeEEec
Confidence            34567788874    456788999999999999999884 33332    56777777766554 4889988875

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=82.77  E-value=0.53  Score=41.08  Aligned_cols=32  Identities=28%  Similarity=0.287  Sum_probs=29.0

Q ss_pred             CEEEEEechhHHHHHHHHHHhCCCeEEEEeCC
Q 015310          369 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  400 (409)
Q Consensus       369 ~~vlvlGaGGaarai~~aL~~~G~~i~v~nR~  400 (409)
                      ..++|||+|.+|..++..++++|.+++|+.+.
T Consensus        43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~   74 (261)
T d1mo9a1          43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRW   74 (261)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            35999999999999999999999999998875

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=82.68  E-value=14  Score=32.18  Aligned_cols=44  Identities=18%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             CCCeeEEE--eeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCC
Q 015310            8 KNTTMICA--PLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQ   51 (409)
Q Consensus         8 ~~~~~icv--~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~   51 (409)
                      .+++....  +.-.|+.+...+.++.+.+.|+|++|+=+-+-++..
T Consensus        14 ~~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~a   59 (261)
T d1rd5a_          14 KGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYI   59 (261)
T ss_dssp             TTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTT
T ss_pred             cCCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCc
Confidence            45554443  455688898898888888899999999998766553

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=80.39  E-value=1.1  Score=36.91  Aligned_cols=14  Identities=14%  Similarity=-0.028  Sum_probs=11.0

Q ss_pred             eEEEEeCChHHHHh
Q 015310          393 RVVIFDIDFEQSLL  406 (409)
Q Consensus       393 ~i~v~nR~~~ka~~  406 (409)
                      +|+|+||+.++++.
T Consensus        44 ~i~i~nR~~~~~~~   57 (182)
T d1vi2a1          44 EIKLFNRRDEFFDK   57 (182)
T ss_dssp             EEEEEECSSTTHHH
T ss_pred             eEeeeccchHHHHH
Confidence            89999998765543

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.03  E-value=7.4  Score=34.43  Aligned_cols=86  Identities=19%  Similarity=0.259  Sum_probs=57.2

Q ss_pred             CeeEEEeeccCCHHHHHHHHHHHHhcCCCEEEEEecCCCCCC----------ChhHH----HHHHhcCCCcEEEEeccCC
Q 015310           10 TTMICAPLMAQSVEQVLSNMYQAKAEGADVVEIRLDCINNFQ----------PGKDL----EIILTKKPLPVLIVYRPKW   75 (409)
Q Consensus        10 ~~~icv~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~----------~~~~l----~~l~~~~~~PiI~T~R~~~   75 (409)
                      .+.+.....+.+.+|....++.+...+||++|+=+-+-....          +.+.+    ..+++..+.|+++-+++..
T Consensus       103 ~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~~~~  182 (312)
T d1gtea2         103 NIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNV  182 (312)
T ss_dssp             SEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSCS
T ss_pred             cccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhccCCceeecccccc
Confidence            455555667788888888888877889999999887643211          11222    3344557999998887432


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCcEEEE
Q 015310           76 AGGLYEGDEHKRLEALHLAEDLGADYVDF  104 (409)
Q Consensus        76 eGG~~~~~~~~~~~ll~~~~~~g~dyvDi  104 (409)
                             +  ...++.+.+.+.|++.|.+
T Consensus       183 -------~--~~~~i~~~~~~~g~~gi~~  202 (312)
T d1gtea2         183 -------T--DIVSIARAAKEGGADGVTA  202 (312)
T ss_dssp             -------S--CHHHHHHHHHHHTCSEEEE
T ss_pred             -------h--hHHHHHHHHHHhcccceEE
Confidence                   1  2345667777888888764