Citrus Sinensis ID: 015311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MERRHHSQSHSQRQQRRNHFSSSSSSSSNQSRSNNRFSFPKSSSSSSSSSANDVRDRRRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIEL
Secondary Structure (PSIPRED)
cccccccccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccHHHHcccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHccEEcccccccEEEEccccccccccccccccccHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccccccccHHHHHHHHHHHcccHHEEcccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHcccEEEccccccEEEEcccccccccccccccEEEEEEEccccEEcc
Coil and Loop (DISEMBL)
merrhhsqshsqrqqrrnhfssssssssnqsrsnnrfsfpksssssssssandVRDRRRETQEEKQEEaivgtcpfmcpeaERLQRQRLRDLAVFErlhgdprnsspaLAVKKFCRTMsakevrasdvrplpvLEETLNYLLSLldstehpfevIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVIShhklrsscssssisplhyLNLEQLTKALTSLYNLyeanrsskpihekeaEFRSFYVLLHldsngqpvgeSLSLWFrhvpspiiksKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCcihnccyklhpyplghlskVLMMEESDVELFCNAYGLQTCIDevgnkllptkqttfcrpkgglqnysflgFQQLGRQIEL
Flexible Loop (DISEMBL)
merrhhsqshsqrqqrrnhfssssssssnqsrsnnrfsfpksssssssssandvrDRRRETqeekqeeaivgtcpfmcPEAERLQRQRLRDLAVFErlhgdprnsspalaVKKFCRtmsakevrasdvrplpvLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFcrpkgglqnysflgfqqlgrqiel
Low Complexity Region (SEG)
MErrhhsqshsqrqqrrnhfssssssssnqsrsnnrfsfpksssssssssANDVrdrrretqeekqeeAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVleetlnyllslldsteHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRsscssssisPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIEL
Disordered region (IsUnstruct)
*********************************************************************IVGTCPFMCPEAERLQRQRLRDLAVFERL**********LAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEAN*********EAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQL******
Disordered Region (DISOPRED)
********************************************************************AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRT***KEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPT***************SFLGFQQLGRQI**
Disordered Region (DISEMBL)
********************************************************************AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISH***********ISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIEL
Disordered Region (DISPRO)
********************************S****SFPKS****************RETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLG*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERRHHSQSHSQRQQRRNHFSSSSSSSSNQSRSNNRFSFPKSSSSSSSSSANDVRDRRRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQIEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
Q9WUU9	1971	80 kDa MCM3-associated pr	yes	no	0.784	0.162	0.304	8e-31
O60318	1980	80 kDa MCM3-associated pr	yes	no	0.784	0.162	0.299	1e-29
O74889	1024	SAC3 family protein 1 OS=	yes	no	0.757	0.302	0.316	2e-27
Q9USI4	458	SAC3 family protein 2 OS=	no	no	0.855	0.764	0.287	8e-24
Q9U3V9	1370	Protein xmas-2 OS=Drosoph	yes	no	0.777	0.232	0.292	1e-21
P46674	1301	Nuclear mRNA export prote	yes	no	0.706	0.222	0.288	4e-18
A6NKF1	404	SAC3 domain-containing pr	no	no	0.696	0.705	0.281	5e-13
A6H687	427	SAC3 domain-containing pr	no	no	0.850	0.814	0.240	7e-06

>sp|Q9WUU9|MCM3A_MOUSE 80 kDa MCM3-associated protein OS=Mus musculus GN=Mcm3ap PE=2 SV=2

 Score =  135 bits (339), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 177/351 (50%), Gaps = 30/351 (8%)

Query: 53  DVRDR-----RRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSP 107
           D RDR     R +  +  +  A VGTCP MCPE ER  R+    L+VFE + G  +    
Sbjct: 604 DQRDRIMRQARVKRTDLDKARAFVGTCPDMCPEKERYLRETRSQLSVFEVVPGTDQVDH- 662

Query: 108 ALAVKKFCRTMSAK-EVRASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRS 165
           A AVK++ R+ + + E    ++RP  VL  T++YL++ ++D  E      +DFV++RTR 
Sbjct: 663 AAAVKEYSRSSADQEEPLPHELRPSAVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRG 722

Query: 166 VRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSL 225
           +R+D+  Q++ +   +++ EK  +FH+   H +   C     S    +N E +TK L SL
Sbjct: 723 IRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFM---CEEPMSSFDAKINNENMTKCLQSL 779

Query: 226 YNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFA 285
             +Y+  R+       EAEF+ + VLL+L+      G+ L    +  P  +  S E+ FA
Sbjct: 780 KEMYQDLRNKGVFCASEAEFQGYNVLLNLNK-----GDILREVQQFHPD-VRNSPEVNFA 833

Query: 286 RQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP----- 340
            QA       N+ RF   V + ASYL  C++  Y +++R  AL  + N  Y +       
Sbjct: 834 VQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFNQIRKDALRAL-NVAYTVSTQRSTV 891

Query: 341 YPLGHLSKVLMMEES-DVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 390
           +PL  + ++L+  +S +   F N +GL      V +  +   ++ F  P+G
Sbjct: 892 FPLDGVVRMLLFRDSEEATNFLNYHGLT-----VADGCVELNRSAFLEPEG 937

May be involved in the nuclear localization pathway of MCM3.
Mus musculus (taxid: 10090)

>sp|O60318|MCM3A_HUMAN 80 kDa MCM3-associated protein OS=Homo sapiens GN=MCM3AP PE=1 SV=2

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/351 (29%), Positives = 174/351 (49%), Gaps = 30/351 (8%)

Query: 53  DVRDR-----RRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSP 107
           D RDR     R +  +  +    VGTC  MCPE ER  R+    L+VFE + G  +    
Sbjct: 611 DQRDRIMRQARVKRTDLDKARTFVGTCLDMCPEKERYMRETRSQLSVFEVVPGTDQVDH- 669

Query: 108 ALAVKKFCRTMSAK-EVRASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRS 165
           A AVK++ R+ + + E    ++RPLPVL  T++YL++ ++D  E      +DFV++RTR 
Sbjct: 670 AAAVKEYSRSSADQEEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRG 729

Query: 166 VRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSL 225
           +R+D+  Q++ +   +++ EK  +FH+   H +   C     S    +N E +TK L SL
Sbjct: 730 IRKDITQQHLCDPLTVSLIEKCTRFHIHCAHFM---CEEPMSSFDAKINNENMTKCLQSL 786

Query: 226 YNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFA 285
             +Y+  R+       EAEF+ + VLL L+      G+ L    +  P+ +  S E+ FA
Sbjct: 787 KEMYQDLRNKGVFCASEAEFQGYNVLLSLNK-----GDILREVQQFHPA-VRNSSEVKFA 840

Query: 286 RQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP----- 340
            QA       N+ RF   V + ASYL  C++  Y  ++R  AL  + N  Y +       
Sbjct: 841 VQAFAALNSNNFVRFFKLVQS-ASYLNACLLHCYFSQIRKDALRAL-NFAYTVSTQRSTI 898

Query: 341 YPLGHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 390
           +PL  + ++L+  +  +   F   +GL      V +  +   ++ F  P+G
Sbjct: 899 FPLDGVVRMLLFRDCEEATDFLTCHGLT-----VSDGCVELNRSAFLEPEG 944

May be involved in the nuclear localization pathway of MCM3.

Homo sapiens (taxid: 9606)

>sp|O74889|SAC31_SCHPO SAC3 family protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC576.05 PE=1 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/351 (31%), Positives = 161/351 (45%), Gaps = 41/351 (11%)

Query: 61  TQEEKQEEAI--VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNS--SPALAVKKFCR 116
           T+  + +EA+  VGTCP MCPE ER QR+   +L   ER   +P        LAVK F R
Sbjct: 93  TKPRQLDEAVTFVGTCPDMCPEYEREQREYQNNL---ERWEINPETGRVDKNLAVKAFHR 149

Query: 117 TMSAKE-VRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNI 175
             +  E    SDVRP PVL+++L+YL+  +     P E  H FV DRTRS+RQD  +QN 
Sbjct: 150 PAAGNEQALPSDVRPPPVLKKSLDYLVDKIVCGPDPLENTHFFVRDRTRSIRQDFTLQNC 209

Query: 176 VNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKA-LTSLYNLYEANRS 234
            +  A+   E+I ++H++  H+L   C     S      +EQL K  L SL   Y+  R 
Sbjct: 210 RDLDAVACHERIARYHILCIHQL---CEKKQFSAQQ--EVEQLRKGILQSLCEFYDDLRK 264

Query: 235 SKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQM 294
            K     E EFRS+ ++ HL  +   V +S  L     P  I   + +  A +     Q 
Sbjct: 265 VKIRCPNEPEFRSYAIITHL-RDPDVVRQSQIL-----PIEIFDDQRVQLALRLSALAQK 318

Query: 295 GN-----------------YRRFLSTVAAEA-SYLQYCIIEPYIDEVRSLALCCIHNCCY 336
            N                 Y RF   V + A +YL  C++E +   +R  AL  +     
Sbjct: 319 NNERVGHILPRNTEACPNLYTRFFKLVQSPAVTYLMACLLESHFMSIRKGALKAMRKAFM 378

Query: 337 KLHP-YPLGHLSKVLMMEESD-VELFCNAYGLQTCIDEVGNKLLPTKQTTF 385
             H  +P G L ++L  +  +    F   YGL+   D+ G   +   +T F
Sbjct: 379 SAHANFPCGDLKRILHFDTVEQAASFSRYYGLEVS-DDNGELSINLNKTAF 428

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9USI4|SAC32_SCHPO SAC3 family protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC70.06 PE=3 SV=1

 Score =  112 bits (279), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 186/403 (46%), Gaps = 53/403 (13%)

Query: 27  SSNQSRSNNRFSFPKSSSSSSSSSANDVRDRRRETQEEKQEE---------AIVGTCPFM 77
           S ++S S  R +     S++  ++   ++ +R++ QE  Q +          +VGTC  M
Sbjct: 18  SLDRSDSTKRAARAARFSTTLDANFQALKKKRKDEQESFQAKQSTNWEKSSVLVGTCRQM 77

Query: 78  CPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAK-EVRASDVRPLPVLEE 136
           CPE E  +R+    +  +E L    + + P+LAVK + R  + K  +  SDVRP  +L+ 
Sbjct: 78  CPEFELEERKLQHAIHPYE-LDPVSKQAHPSLAVKAYHRPAAGKGPILPSDVRPPSILKN 136

Query: 137 TLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISH 195
           T++YL   +LD   +     H FV DRTR+VRQD  +Q+  +  ++   E I +FH+IS 
Sbjct: 137 TIDYLFKVILD--RYSLREAHAFVRDRTRAVRQDFSVQSSFSQDSVYCHELIARFHIISL 194

Query: 196 HKLRSSCSSSSISPLHYLNLEQLTKALTSLYN---LYEANRSSKPIHEKEAEFRSFYVLL 252
           H+L  + + S         +EQL+K++  LY    LY+     K     EAEFR++ VLL
Sbjct: 195 HELAHTPNFS-----RQQEIEQLSKSMEILYTLGQLYDYMHLRKEHCTHEAEFRAYMVLL 249

Query: 253 HLDSNGQP-VGESLSLWFRHV-PSPIIKS--KEMWFARQALRYFQMGN------------ 296
            L   G P VG     W   V   PI+K+  K    A++        N            
Sbjct: 250 SL---GDPSVGLDTLSWPDFVFKKPIVKTSLKLYSLAQRNNHTITTSNSISLSLVSSFNT 306

Query: 297 ------YRRFLSTVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-YPLGHLSK 348
                 Y RF    ++   SYL  C+++ ++  +R+ AL  +  C    H   P   L K
Sbjct: 307 EATSNLYTRFFKIASSFRVSYLMGCLLDLFVPSIRTGALKAMKKCYLSAHSNIPFKDLMK 366

Query: 349 VLMMEESDVELF--CNAYGLQT-CIDEVGNKLLPTKQTTFCRP 388
           +L     D EL   C  +GL+   I E  + ++  ++T    P
Sbjct: 367 ILAATSED-ELVQCCKMHGLKIEYIGEQPSAVVLNRKTVITEP 408

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9U3V9|XMAS2_DROME Protein xmas-2 OS=Drosophila melanogaster GN=xmas-2 PE=1 SV=3

 Score =  104 bits (260), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 172/369 (46%), Gaps = 51/369 (13%)

Query: 44  SSSSSSSANDVRDR--RRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGD 101
           +S    S  D RD+  R    + K   A  G C  MCPE ER+ R+  R +A +E   G 
Sbjct: 170 TSEEKFSVLDARDKLLRLNRTQHKLSGATQGHCADMCPEKERVLREFQRQVAYYELQPGS 229

Query: 102 PRNSSPALAVKKFCRTMSAKEVRASDVRPLP-------VLEETLNYLL-SLLDSTE---- 149
                   A+K++ R+ + +E       PLP        L  T++YL+  ++D +E    
Sbjct: 230 DELICHERALKQYSRSSADQET------PLPHELRNETALHMTMSYLMHEIMDISERQDP 283

Query: 150 --HPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSI 207
             H  +  H FV+DRTRS+R+++  Q + +  A+ + E+  +FH+    +L  +  S   
Sbjct: 284 QSHMGDWFH-FVWDRTRSIRKEITQQELCSLGAVKLVEQCARFHIHCAARLVDADPSVFD 342

Query: 208 SPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHL-DSNGQPVGESLS 266
           S    +N E LTK L +L  +Y   R       KEAEFR + VLL+L D+N         
Sbjct: 343 SK---INAENLTKCLQTLKYMYHDLRIKGVPCPKEAEFRGYIVLLNLADAN--------F 391

Query: 267 LW-FRHVPSPIIKSKEMWFARQALRYF---QMGNYRRFLSTVA-AEASYLQYCIIEPYID 321
           LW    +P+ +    E+   RQA++++   Q  N+ RF   +A  + SYL  CI+  Y  
Sbjct: 392 LWDIGQLPAELQSCPEV---RQAIQFYLALQDTNFVRFFQLLADKDTSYLSACILVNYFT 448

Query: 322 EVRSLALCCIHNCCY-----KLHPYPLGHLSKVL-MMEESDVELFCNAYGLQTCIDEVGN 375
            +R L L  +          ++   PL +++++L    E +   F   YGLQ  I+E G 
Sbjct: 449 RLRVLGLHRLIQAYRSPRKDEVSSLPLSYIAELLSFASEQEAADFVQHYGLQ--INEAGR 506

Query: 376 KLLPTKQTT 384
            +L    T 
Sbjct: 507 VVLSRMHTV 515

Required for spermatogenesis, oogenesis and embryogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|P46674|SAC3_YEAST Nuclear mRNA export protein SAC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SAC3 PE=1 SV=2

 Score = 93.2 bits (230), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 154/319 (48%), Gaps = 30/319 (9%)

Query: 68  EAIV--GTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRA 125
           +AIV  GTC  MCP  ER +R     +  +E+   + + +S   A+K F R  +A     
Sbjct: 192 DAIVFQGTCLDMCPTFERSRRNVEYTVYSYEKNQPNDKKASRTKALKVFARPAAAAAPPL 251

Query: 126 -SDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMF 184
            SDVRP  +L +TL+Y++  L +T    E    F++DR RS+RQD   QN    +A++  
Sbjct: 252 PSDVRPPHILVKTLDYIVDNLLTTLPESE---GFLWDRMRSIRQDFTYQNYSGPEAVDCN 308

Query: 185 EKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAE 244
           E+IV+ H++  H +  S    S+       LEQL K+L +L  +Y+  RSS      EAE
Sbjct: 309 ERIVRIHLLILHIMVKSNVEFSLQQ----ELEQLHKSLITLSEIYDDVRSSGGTCPNEAE 364

Query: 245 FRSFYVLLHL-----DSNGQPVGE--------SLSLWFRHVPSPIIKSKEMWFARQALRY 291
           FR++ +L  +     D N Q + +         ++L FR V S    ++  +   +    
Sbjct: 365 FRAYALLSKIRDPQYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLN 424

Query: 292 FQMGNYRRFLSTVAAEA-SYLQYCIIEPYIDEVRSLALCCIHNCCYKLH-PYPLGHLSKV 349
           F    Y RF   + + +   L    ++ ++ ++R  AL  + +   K H P P  +L  +
Sbjct: 425 F----YARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENM 480

Query: 350 LMMEE-SDVELFCNAYGLQ 367
           L+     ++  FCN Y ++
Sbjct: 481 LLFNNRQEIIEFCNYYSIE 499

Component of the SAC3-THP1 complex, which functions in transcription-coupled mRNA export from the nucleus to the cytoplasm. SAC3-THP1 functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket), by association with components of the nuclear mRNA export machinery (MEX67-MTR2 and SUB2) in the nucleoplasm and the nucleoporin NUP1 at the nuclear basket.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6NKF1|SAC31_HUMAN SAC3 domain-containing protein 1 OS=Homo sapiens GN=SAC3D1 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 135/309 (43%), Gaps = 24/309 (7%)

Query: 68  EAIVGTCPFMCPEAERLQRQRLRDLAVFERLHG---DPRNSSPALAVKKFCRTMSAKE-V 123
           E  VGTCP MCP AER QR+R   L   E + G   DP  + P  AVK++ R  + K   
Sbjct: 51  ELPVGTCPDMCPAAERAQREREHRLHRLEVVPGCRQDPPRADPQRAVKEYSRPAAGKPRP 110

Query: 124 RASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAIN 182
             S +RP  VL  T+ YL   + +S +     +  FV DR R+V  DL +Q   + +A  
Sbjct: 111 PPSQLRPPSVLLATVRYLAGEVAESADIARAEVASFVADRLRAVLLDLALQGAGDAEAAV 170

Query: 183 MFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKE 242
           + E  +   +    +L    +     P+  L   Q+ +   SL   Y   R + P H ++
Sbjct: 171 VLEAALATLLTVVARLGPDAARGPADPV--LLQAQVQEGFGSLRRCY--ARGAGP-HPRQ 225

Query: 243 AEFRSFYVLLHLDSNGQPVGESLSL--WFRHVPSPIIKSKEMWFARQALRYFQMGNYRRF 300
             F+  ++L +L S  + + E L L    R  P P+ K+  +  A      F+ GN  R 
Sbjct: 226 PAFQGLFLLYNLGSV-EALHEVLQLPAALRACP-PLRKALAVDAA------FREGNAARL 277

Query: 301 LSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNC--CYKLHPYPLGHLSKVLMMEE-SDV 357
              +     YL  C ++ ++   R  AL          K    PLG +  +L ++   + 
Sbjct: 278 FRLLQT-LPYLPSCAVQCHVGHARREALARFARAFSTPKGQTLPLGFMVNLLALDGLREA 336

Query: 358 ELFCNAYGL 366
              C A+GL
Sbjct: 337 RDLCQAHGL 345

Involved in centrosome duplication and mitotic progression.

Homo sapiens (taxid: 9606)

>sp|A6H687|SAC31_MOUSE SAC3 domain-containing protein 1 OS=Mus musculus GN=Sac3d1 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 150/378 (39%), Gaps = 30/378 (7%)

Query: 4   RHHSQSHSQRQQRRNHFSSSSSSSSNQSRSNNRFSFPKSSSSSSSSSANDVRDRRRETQE 63
           R   +S   RQ       +    SS Q  +  RF +P  +  +SS+           T  
Sbjct: 23  RGSGKSRKPRQAAFGQTGARVCPSSPQQDAVPRFRWPGDAECASST----------HTPT 72

Query: 64  EKQEEAIVGTCPFMCP---EAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSA 120
               +  +G CP MCP    A R + +RL  L V     G+   + P   VK++ R  + 
Sbjct: 73  MSGCKLPMGLCPDMCPAAERARRERERRLHRLEVEPGGRGNAPRADPKRTVKEYSRPAAG 132

Query: 121 K-EVRASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVND 178
           K     S +RP PVL  T+ YL   +    +     +  FV DR R+VR DL +Q + + 
Sbjct: 133 KPRPPPSLLRPPPVLLATVRYLAGEVAGRGDVSCAEVASFVADRLRAVRLDLSLQGVDDA 192

Query: 179 KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPI 238
            A  + E  +   +    ++R   +  +  P+  L   Q+ +   SL   Y   +   P 
Sbjct: 193 DAATVLEAALATLLAVVARVRPEETRGAADPV--LLQTQVQEGFGSLRRCYARGKGPYP- 249

Query: 239 HEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYR 298
             ++A F+  ++L +L S  + + E L L     P+ +     +  A      F+  N+ 
Sbjct: 250 --RQAAFQGLFLLYNLGSV-EALQEVLQL-----PAALRACPPLQAALAVDAAFREDNHA 301

Query: 299 RFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNC--CYKLHPYPLGHLSKVLMMEE-S 355
           R    +     YLQ C ++ +I   R  AL  +       K    PL  +   L ++   
Sbjct: 302 RLFRLLRT-LPYLQSCAVQEHIGYARRKALARLSRALSTPKGQTLPLDFIEHFLALDGLQ 360

Query: 356 DVELFCNAYGLQTCIDEV 373
           +    C A+GL    D V
Sbjct: 361 EARDLCQAHGLTLDKDRV 378

Involved in centrosome duplication and mitotic progression.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
224057204	357	predicted protein [Populus trichocarpa]	0.841	0.963	0.702	1e-144
255569219	440	leng8 protein, putative [Ricinus communi	0.919	0.854	0.634	1e-141
357515593	403	80 kDa MCM3-associated protein [Medicago	0.960	0.975	0.619	1e-138
449458706	427	PREDICTED: SAC3 family protein 1-like [C	0.936	0.896	0.621	1e-135
388497576	403	unknown [Medicago truncatula]	0.960	0.975	0.606	1e-135
298205116	424	unnamed protein product [Vitis vinifera]	0.970	0.936	0.613	1e-134
359494933	407	PREDICTED: SAC3 family protein 1-like [V	0.899	0.904	0.629	1e-134
359494973	407	PREDICTED: SAC3 family protein 1-like [V	0.899	0.904	0.634	1e-133
225449759	407	PREDICTED: SAC3 family protein 1-like [V	0.819	0.823	0.680	1e-133
296084674	421	unnamed protein product [Vitis vinifera]	0.819	0.795	0.680	1e-133

>gi|224057204|ref|XP_002299171.1| predicted protein [Populus trichocarpa] gi|222846429|gb|EEE83976.1| predicted protein [Populus trichocarpa]

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/349 (70%), Positives = 298/349 (85%), Gaps = 5/349 (1%)

Query: 60  ETQEEKQEEA-----IVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKF 114
           +T+E+K+ ++     ++GTCPFMCPE+ER QR+RL+DLAVFERLHG+PR +S ALAVKKF
Sbjct: 8   KTEEDKEADSSDFPRLIGTCPFMCPESERSQRERLQDLAVFERLHGNPRKTSQALAVKKF 67

Query: 115 CRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQN 174
           CRT+SAK ++ASDVRPLPVLE+TL YLL+LLDST+HPFEV+HDF+FDRTRS+RQDL MQN
Sbjct: 68  CRTISAKHMQASDVRPLPVLEDTLAYLLNLLDSTDHPFEVVHDFIFDRTRSIRQDLSMQN 127

Query: 175 IVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRS 234
           IV+DK+I M+EK+VKFHVISH KL+   SSS IS +HYLN+EQLTKALTSLYNLY+ANR 
Sbjct: 128 IVDDKSIYMYEKMVKFHVISHLKLQRCRSSSDISSVHYLNMEQLTKALTSLYNLYDANRD 187

Query: 235 SKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQM 294
           S  ++  EAEFRS YVLLHLDSN QP+GESLSLWFR V  PII+SKEM FAR  LR++QM
Sbjct: 188 SGTVYGNEAEFRSLYVLLHLDSNTQPMGESLSLWFRFVLHPIIRSKEMCFARSVLRFYQM 247

Query: 295 GNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE 354
           GNY RF ST++AEASYLQYCI+E YI++VR+L+L  I+N  YKLHPYPL HLSK+L M+E
Sbjct: 248 GNYMRFFSTISAEASYLQYCILERYINKVRALSLSYINNAGYKLHPYPLVHLSKLLKMKE 307

Query: 355 SDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQL 403
           SD+E+ CNA GL+TC D++GNKLLPTKQTTFC PK G Q+Y F G +Q 
Sbjct: 308 SDLEVLCNACGLETCADDMGNKLLPTKQTTFCCPKEGFQSYIFTGLEQF 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569219|ref|XP_002525578.1| leng8 protein, putative [Ricinus communis] gi|223535157|gb|EEF36837.1| leng8 protein, putative [Ricinus communis]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/380 (63%), Positives = 301/380 (79%), Gaps = 4/380 (1%)

Query: 30  QSRSNNRFSFPKSSSSSSSSSAND----VRDRRRETQEEKQEEAIVGTCPFMCPEAERLQ 85
           ++ SN+R+  P    S ++S+  +    +      T ++     +VGTCPFMCPE+ER Q
Sbjct: 61  KNTSNSRYVPPSRRPSITTSTTQNEKVKIGGEEEVTTKDYSFPVLVGTCPFMCPESERTQ 120

Query: 86  RQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLL 145
           R+RLRDLAVFERLHG+P  +SP+LAVKKFCRT+S   V+ASDVRPLPVLE+TL+YLL+L 
Sbjct: 121 RERLRDLAVFERLHGNPGKTSPSLAVKKFCRTISTAHVQASDVRPLPVLEDTLSYLLNLA 180

Query: 146 DSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSS 205
           DST+HPFEV+HDF+FDRTRS+RQDL MQNIVNDKAI M+EK+VKFHV SHH+L+   S  
Sbjct: 181 DSTDHPFEVVHDFLFDRTRSIRQDLSMQNIVNDKAIYMYEKMVKFHVESHHRLQHGGSGE 240

Query: 206 SISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESL 265
            IS +HYLN+EQL KALTSLY LY+AN++   I+E E+EFRS YVLLHLDS  QP+GESL
Sbjct: 241 HISSVHYLNMEQLIKALTSLYKLYDANQNPNCIYENESEFRSLYVLLHLDSRNQPMGESL 300

Query: 266 SLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRS 325
           SLWF  +P PII+SKEM F+R  LR F+MGNY+RF  TVAAEAS+LQYCIIE Y +E+R+
Sbjct: 301 SLWFSRLPHPIIQSKEMCFSRSVLRAFRMGNYKRFFYTVAAEASHLQYCIIERYFNEIRA 360

Query: 326 LALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTF 385
            +L CI+N  YKLHPYPL HLS +L+M+ES++ELFCNA GL+T  DE+GNKLLPTKQTTF
Sbjct: 361 QSLSCINNAGYKLHPYPLAHLSNLLIMKESNLELFCNACGLKTYTDEMGNKLLPTKQTTF 420

Query: 386 CRPKGGLQNYSFLGFQQLGR 405
           C PKGG Q+++F   +Q  R
Sbjct: 421 CIPKGGFQSFNFTDLEQFDR 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515593|ref|XP_003628085.1| 80 kDa MCM3-associated protein [Medicago truncatula] gi|355522107|gb|AET02561.1| 80 kDa MCM3-associated protein [Medicago truncatula]

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 247/399 (61%), Positives = 307/399 (76%), Gaps = 6/399 (1%)

Query: 7   SQSHSQRQQRRNHFSSSSSSSSNQSRSNNRFSFPKSSSSSSSSSANDVRDRRRETQEEKQ 66
           S S S+RQ+   + S+++   S  S  + R + P ++ ++S++S +D  D      ++  
Sbjct: 11  SFSQSRRQKFPLNASTATHHRSKVSTFSQRVTPPPTTGNNSNASTSDFND------DDSS 64

Query: 67  EEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRAS 126
              ++GTC +MCPE ER+QR++LRDLAVFERL+G+PR SSP LAVKKFCRT+S K+V+AS
Sbjct: 65  FGVLLGTCSYMCPERERIQREKLRDLAVFERLNGNPRKSSPVLAVKKFCRTISIKDVQAS 124

Query: 127 DVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEK 186
           D+RPL VLE+TLNYLL LLDS EHPFEV+HDF+FDRTRS+RQDL MQNIVN KAI M+E 
Sbjct: 125 DMRPLNVLEDTLNYLLGLLDSKEHPFEVVHDFIFDRTRSIRQDLTMQNIVNKKAIYMYEG 184

Query: 187 IVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFR 246
           +VKFHVISHHKL  S    +I+  H+LN+EQLTK L+SL+NLYEANR+S  +HE EAEF 
Sbjct: 185 MVKFHVISHHKLWGSMGDPNIASTHHLNMEQLTKTLSSLFNLYEANRNSNDVHENEAEFH 244

Query: 247 SFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA 306
           S YVLL+L S+ +P+GE LSLWF HV + I+KSKEM FAR+ +R F+MGNY  F  TVAA
Sbjct: 245 SLYVLLNLGSHSKPMGEPLSLWFSHVSTSILKSKEMRFARRIVRSFRMGNYIDFFHTVAA 304

Query: 307 EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGL 366
           EASYLQYCI+EPYI+EVRSLAL  I+   YKLHPYPL  LSK LM+EESD+E FC++ GL
Sbjct: 305 EASYLQYCIMEPYINEVRSLALSYINFGGYKLHPYPLFKLSKHLMIEESDLESFCHSCGL 364

Query: 367 QTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGR 405
           +TC DE GNKLL TKQTTF  PKGG Q YSFLG Q   R
Sbjct: 365 ETCTDESGNKLLHTKQTTFSHPKGGFQKYSFLGLQDYER 403

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458706|ref|XP_004147088.1| PREDICTED: SAC3 family protein 1-like [Cucumis sativus] gi|449503506|ref|XP_004162036.1| PREDICTED: SAC3 family protein 1-like [Cucumis sativus]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/394 (62%), Positives = 296/394 (75%), Gaps = 11/394 (2%)

Query: 16  RRNHFSSSSSSSSNQSRSNN-----RFSFPKSSSSSSSSSANDVRDRRRETQEEKQEE-- 68
           RRN+ + S +S  N ++ NN      F    S      SSA  +  ++ ET+++      
Sbjct: 31  RRNYSNRSRNSDYNYAKYNNTNSNRNFEHDSSDWRGKRSSAGKMYIQKLETKDDSDSSHF 90

Query: 69  ----AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVR 124
                IVGTCPFMCPEAER QR+RLRDLA+FERLHG+P  +SP LAVKKFCRTMSAK  +
Sbjct: 91  DLPPVIVGTCPFMCPEAERAQRERLRDLAIFERLHGNPGKTSPGLAVKKFCRTMSAKNDQ 150

Query: 125 ASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMF 184
           A DVRPLPVLE TL Y+LS LDS EHPFEVIHDFVFDRTRS+RQDL +QNIVN+KA+NM+
Sbjct: 151 ALDVRPLPVLENTLKYVLSFLDSKEHPFEVIHDFVFDRTRSIRQDLSIQNIVNEKAVNMY 210

Query: 185 EKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAE 244
           E++V+FH ISH KL +  SSS+ S +H+LN++QL+K L +L NLYE NRS+  I E EAE
Sbjct: 211 EEMVRFHTISHQKLLNGDSSSNASSMHHLNMQQLSKTLITLLNLYEVNRSNGAIFENEAE 270

Query: 245 FRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTV 304
           F SFYVLLHL SN Q  GESL+LWFR + SP+IKSKEM FAR+ LRYF+M NY+ FL T+
Sbjct: 271 FHSFYVLLHLGSNSQTTGESLTLWFRTLRSPVIKSKEMCFARRILRYFRMCNYKGFLCTI 330

Query: 305 AAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAY 364
            AEAS LQYCI+EPY++EVR+LAL  I+N  YKL+PYPL  LS +LMMEES+VE FC A 
Sbjct: 331 GAEASNLQYCILEPYVNEVRALALSFINNGGYKLNPYPLVDLSMLLMMEESEVESFCQAC 390

Query: 365 GLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFL 398
           GL TC DE+GNK LPTKQTTF  PKG  Q Y+FL
Sbjct: 391 GLATCGDELGNKSLPTKQTTFSSPKGVFQRYNFL 424

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497576|gb|AFK36854.1| unknown [Medicago truncatula]

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 242/399 (60%), Positives = 301/399 (75%), Gaps = 6/399 (1%)

Query: 7   SQSHSQRQQRRNHFSSSSSSSSNQSRSNNRFSFPKSSSSSSSSSANDVRDRRRETQEEKQ 66
           S S S+RQ+   + S+++   S  S  + R + P ++ ++S++S +D  D      ++  
Sbjct: 11  SFSQSRRQKFPLNASTATHHRSKVSTFSQRVTPPPTTGNNSNASTSDFND------DDSS 64

Query: 67  EEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRAS 126
              ++GTC +MCPE ER+QR++LRDLAVFERL+G+PR S P LAVKKFCRT+S K+V+AS
Sbjct: 65  FGVLLGTCSYMCPERERIQREKLRDLAVFERLNGNPRKSPPVLAVKKFCRTISIKDVQAS 124

Query: 127 DVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEK 186
           D+RPL VLE+TLNYLL LLDS EHPFE +HDF+FDRTRS+RQDL MQN VN KAI M+E 
Sbjct: 125 DMRPLNVLEDTLNYLLGLLDSKEHPFEAVHDFIFDRTRSIRQDLTMQNTVNKKAIYMYEG 184

Query: 187 IVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFR 246
           +VKFHVISHHKL  S    +I+  H+LN+EQLTK L+SL+NLYEANR+S  +HE EAEF 
Sbjct: 185 MVKFHVISHHKLWGSMGDPNIASTHHLNMEQLTKTLSSLFNLYEANRNSNDVHENEAEFH 244

Query: 247 SFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA 306
           S YVLL+L S+  P+GE LSLWF HV + I+KSKEM FAR+ +R F+MGNY  F  TVAA
Sbjct: 245 SLYVLLNLGSHSTPMGEPLSLWFSHVSTSILKSKEMRFARRIVRSFRMGNYIDFFHTVAA 304

Query: 307 EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGL 366
           EA YLQYCI+EPYI+EVRSLAL  I+   YKLHPYPL  LSK LM+EESD+E FC++ GL
Sbjct: 305 EAPYLQYCIMEPYINEVRSLALSYINFGGYKLHPYPLFKLSKHLMIEESDLESFCHSCGL 364

Query: 367 QTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGR 405
           +TC DE GNKLL TKQTTF  PK G Q YSFLG Q   R
Sbjct: 365 ETCTDESGNKLLHTKQTTFSHPKSGFQKYSFLGLQDYER 403

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205116|emb|CBI40637.3| unnamed protein product [Vitis vinifera]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/411 (61%), Positives = 310/411 (75%), Gaps = 14/411 (3%)

Query: 7   SQSHSQRQQRRNHFSSSSSSSSNQSRSN----NRFSFPKSSSSSSSSSANDVRDR----R 58
           +Q+   R+QRRN  +SSS+ SS  S S+     +FS     +S+S   A+ ++ +    +
Sbjct: 14  AQAVMDRRQRRNPSASSSAFSSPTSSSSRFRSEKFSSNPPKTSNSLEDAHQLKSKCGKPQ 73

Query: 59  RETQEEKQEE------AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVK 112
           R  QEE+ E+      ++VGTCPFMCP  ER QR+RLRDLAVFERLHG+P  +SP+LAVK
Sbjct: 74  RPEQEEEGEQDPNNLLSLVGTCPFMCPAGERAQRERLRDLAVFERLHGNPGKTSPSLAVK 133

Query: 113 KFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIM 172
           KFCRT++ K ++ASDVRPLPVLEETLNYLL+LLD+TEHPFEV+HDFVFDRTRS+RQDL M
Sbjct: 134 KFCRTIATKHMQASDVRPLPVLEETLNYLLNLLDATEHPFEVVHDFVFDRTRSIRQDLSM 193

Query: 173 QNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEAN 232
           QNIVND+ I+M+E++VKFH+ISHHKLRS  S  + S +HYLN+EQL K L SLY LYE N
Sbjct: 194 QNIVNDQTIHMYEEMVKFHIISHHKLRSCSSKPNFSSVHYLNMEQLKKCLISLYALYEEN 253

Query: 233 RSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYF 292
           R+S  I++ E EF SF+VLLHL SN QP+GESLSLW   VPS I+KSKEM FAR+ LR F
Sbjct: 254 RNSNSIYKNEPEFCSFHVLLHLGSNNQPLGESLSLWLGRVPSLILKSKEMCFARRLLRLF 313

Query: 293 QMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMM 352
           +MGNY+RFL T A EASYLQY IIEPYI+EVR+LAL C++ C YKLHPYP+ HLSK+LMM
Sbjct: 314 RMGNYKRFLCTTATEASYLQYYIIEPYINEVRALALSCVNYCGYKLHPYPIAHLSKLLMM 373

Query: 353 EESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQL 403
           +E DVE FCNA GL+T   E GNK L TKQT F  PK    +Y  L  +  
Sbjct: 374 KELDVESFCNACGLETSTGERGNKFLSTKQTNFHYPKEVFPSYCLLSLEHF 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494933|ref|XP_003634875.1| PREDICTED: SAC3 family protein 1-like [Vitis vinifera]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 238/378 (62%), Positives = 289/378 (76%), Gaps = 10/378 (2%)

Query: 36  RFSFPKSSSSSSSSSANDVRDRRRETQEEKQEE----------AIVGTCPFMCPEAERLQ 85
           +FS     +S+S   A+ ++ +  + Q  +QEE          ++VGTCPFMCP  ER Q
Sbjct: 30  KFSSNPPKTSNSLEDAHQLKSKCGKPQRPEQEEEGEQDPNNLLSLVGTCPFMCPAGERAQ 89

Query: 86  RQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLL 145
           R+RLRDLAVFERLHG+P  +SP+LAVKKFCRT++ K ++ASDVRPLPVLEETLNYLL+LL
Sbjct: 90  RERLRDLAVFERLHGNPGKTSPSLAVKKFCRTIATKHMQASDVRPLPVLEETLNYLLNLL 149

Query: 146 DSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSS 205
           D+TEHPFEV+HDFVFDRTRS+RQDL MQNIVND+ I+M+E++VKFH+ISHHKLRS  S  
Sbjct: 150 DATEHPFEVVHDFVFDRTRSIRQDLSMQNIVNDQTIHMYEEMVKFHIISHHKLRSCSSKP 209

Query: 206 SISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESL 265
           + S +HYLN+EQL K L SLY LYE NR+S  I++ E EF SF+VLLHL SN QP+GESL
Sbjct: 210 NFSSVHYLNMEQLKKCLISLYALYEENRNSNSIYKNEPEFCSFHVLLHLGSNNQPLGESL 269

Query: 266 SLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRS 325
           SLW   VPS I+KSKEM FAR+ LR F+MGNY+RFL T A EASYLQY IIEPYI+EVR+
Sbjct: 270 SLWLGRVPSLILKSKEMCFARRLLRLFRMGNYKRFLCTTATEASYLQYYIIEPYINEVRA 329

Query: 326 LALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTF 385
           LAL C++ C YKLHPYP+ HLSK+LMM+E DVE FCNA GL+T   E GNK L TKQT F
Sbjct: 330 LALSCVNYCGYKLHPYPIAHLSKLLMMKELDVESFCNACGLETSTGERGNKFLSTKQTNF 389

Query: 386 CRPKGGLQNYSFLGFQQL 403
             PK    +Y  L  +  
Sbjct: 390 HYPKEVFPSYCLLSLEHF 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494973|ref|XP_003634889.1| PREDICTED: SAC3 family protein 1-like [Vitis vinifera]

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/378 (63%), Positives = 290/378 (76%), Gaps = 10/378 (2%)

Query: 36  RFSFPKSSSSSSSSSANDVRDRRRETQEEKQEE----------AIVGTCPFMCPEAERLQ 85
           +FS     +S+S   A+ ++ +  + Q  KQEE          ++VGTCPFMCP  ER Q
Sbjct: 30  KFSSNPPKTSNSLEDAHQLKSKCGKPQRPKQEEEGEQDPNNLLSLVGTCPFMCPAGERAQ 89

Query: 86  RQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLL 145
           R+RLRDLAVFERLHG+P  +SP+LAVKKFCRT++ K ++ASDVRPLPVLEETLNYLL+LL
Sbjct: 90  RERLRDLAVFERLHGNPGKTSPSLAVKKFCRTIATKHMQASDVRPLPVLEETLNYLLNLL 149

Query: 146 DSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSS 205
           D+TEHPFEV+HDFVFDRTRS+RQDL MQNI+ND+ I+MFE++VKFH+ISHHKL S  S  
Sbjct: 150 DATEHPFEVVHDFVFDRTRSIRQDLSMQNIINDQTIHMFEEMVKFHIISHHKLHSCSSKP 209

Query: 206 SISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESL 265
           S S +HYLN+EQL K L SLY LY+ NR+S  I++ E EF SF+VLLHL SN QP+GESL
Sbjct: 210 SFSSVHYLNMEQLKKCLISLYALYKENRNSNSIYKNEPEFYSFHVLLHLGSNNQPLGESL 269

Query: 266 SLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRS 325
           SLW   VPS I+KSKEM FAR+ LR F+MGNY+RFL T A EASYLQY IIEPYI+EVR+
Sbjct: 270 SLWLGRVPSLILKSKEMCFARRLLRLFRMGNYKRFLCTTATEASYLQYYIIEPYINEVRA 329

Query: 326 LALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKLLPTKQTTF 385
           LAL C++ C YKLHPYP+ HLSK+LMM+E DVE FCNA GL+T  DE GNK L TKQT F
Sbjct: 330 LALSCVNYCGYKLHPYPIAHLSKLLMMKELDVESFCNACGLETSTDERGNKFLSTKQTNF 389

Query: 386 CRPKGGLQNYSFLGFQQL 403
             PK    +Y  LG +  
Sbjct: 390 HYPKEVFPSYCLLGLEHF 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449759|ref|XP_002269431.1| PREDICTED: SAC3 family protein 1-like [Vitis vinifera]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/335 (68%), Positives = 272/335 (81%)

Query: 69  AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDV 128
           ++VGTCPFMCP  ER QR+RLRDLAVFERLHG+P  +SP+LAVKKFCRT++ K ++ASDV
Sbjct: 73  SLVGTCPFMCPAGERAQRERLRDLAVFERLHGNPGKTSPSLAVKKFCRTIATKHMQASDV 132

Query: 129 RPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
           RPLPVLEETLNYLL+LLD+TEHPFEV+HDF+FDRTRS+RQDL MQNIVND+ I+M+E++V
Sbjct: 133 RPLPVLEETLNYLLNLLDATEHPFEVVHDFIFDRTRSIRQDLSMQNIVNDQTIHMYEEMV 192

Query: 189 KFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSF 248
           KFH++SHHKLRS  S  + S +HYLN+EQL K L SLY LYE NR+S  I++ E EF SF
Sbjct: 193 KFHIMSHHKLRSCSSKPNFSSVHYLNMEQLKKCLISLYALYEENRNSNSIYKNEPEFCSF 252

Query: 249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308
           +VLLHL SN QP+GESLSLW   VPS I+KSKEM FAR+ LR F+MGNY+RFL T A EA
Sbjct: 253 HVLLHLGSNNQPLGESLSLWLGRVPSLILKSKEMCFARRLLRLFRMGNYKRFLCTTATEA 312

Query: 309 SYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQT 368
           SYLQY IIEPYI+EVR+LAL C++ C YKLHPYP+ HLSK+LMM+E DVE FCNA GL+T
Sbjct: 313 SYLQYYIIEPYINEVRALALSCVNYCGYKLHPYPIAHLSKLLMMKELDVESFCNACGLET 372

Query: 369 CIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQL 403
              E GNK L TKQT F  PK    +Y  LG +  
Sbjct: 373 STGERGNKFLSTKQTNFHYPKEVFPSYCLLGLEHF 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084674|emb|CBI25811.3| unnamed protein product [Vitis vinifera]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/335 (68%), Positives = 272/335 (81%)

Query: 69  AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDV 128
           ++VGTCPFMCP  ER QR+RLRDLAVFERLHG+P  +SP+LAVKKFCRT++ K ++ASDV
Sbjct: 87  SLVGTCPFMCPAGERAQRERLRDLAVFERLHGNPGKTSPSLAVKKFCRTIATKHMQASDV 146

Query: 129 RPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
           RPLPVLEETLNYLL+LLD+TEHPFEV+HDF+FDRTRS+RQDL MQNIVND+ I+M+E++V
Sbjct: 147 RPLPVLEETLNYLLNLLDATEHPFEVVHDFIFDRTRSIRQDLSMQNIVNDQTIHMYEEMV 206

Query: 189 KFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSF 248
           KFH++SHHKLRS  S  + S +HYLN+EQL K L SLY LYE NR+S  I++ E EF SF
Sbjct: 207 KFHIMSHHKLRSCSSKPNFSSVHYLNMEQLKKCLISLYALYEENRNSNSIYKNEPEFCSF 266

Query: 249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308
           +VLLHL SN QP+GESLSLW   VPS I+KSKEM FAR+ LR F+MGNY+RFL T A EA
Sbjct: 267 HVLLHLGSNNQPLGESLSLWLGRVPSLILKSKEMCFARRLLRLFRMGNYKRFLCTTATEA 326

Query: 309 SYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQT 368
           SYLQY IIEPYI+EVR+LAL C++ C YKLHPYP+ HLSK+LMM+E DVE FCNA GL+T
Sbjct: 327 SYLQYYIIEPYINEVRALALSCVNYCGYKLHPYPIAHLSKLLMMKELDVESFCNACGLET 386

Query: 369 CIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQL 403
              E GNK L TKQT F  PK    +Y  LG +  
Sbjct: 387 STGERGNKFLSTKQTNFHYPKEVFPSYCLLGLEHF 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2096189	406	SAC3C "AT3G54380" [Arabidopsis	0.823	0.830	0.538	4.2e-95
TAIR|locus:2082485	1697	SAC3B "AT3G06290" [Arabidopsis	0.731	0.176	0.324	1.3e-37
UNIPROTKB|F1NVG3	1659	MCM3AP "Uncharacterized protei	0.691	0.170	0.312	1.3e-27
ZFIN|ZDB-GENE-040715-1	2118	mcm3ap "MCM3 minichromosome ma	0.689	0.133	0.303	1.4e-25
MGI|MGI:1930089	1971	Mcm3ap "minichromosome mainten	0.745	0.154	0.284	1.5e-24
RGD|1306834	1908	Mcm3ap "minichromosome mainten	0.745	0.159	0.281	3e-24
UNIPROTKB|I3LCF4	1990	MCM3AP "Uncharacterized protei	0.735	0.151	0.287	8.4e-24
UNIPROTKB|O60318	1980	MCM3AP "80 kDa MCM3-associated	0.740	0.153	0.280	1.1e-23
UNIPROTKB|E1BJE7	1979	MCM3AP "Uncharacterized protei	0.740	0.153	0.274	9.6e-23
POMBASE|SPCC576.05	1024	sac3 "nuclear export factor Sa	0.738	0.294	0.296	1.3e-22

TAIR|locus:2096189 SAC3C "AT3G54380" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 182/338 (53%), Positives = 238/338 (70%)

Query:    70 IVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVR 129
             IVGTC  MCPE ER+ R+RLRDLAVFERL+G+P  SS  +AVKKFCRT+SA +V+ASDVR
Sbjct:    70 IVGTCSSMCPERERVTRERLRDLAVFERLYGNPSKSSTEIAVKKFCRTLSAADVQASDVR 129

Query:   130 PLPVXXXXXXXXXXXXXXXXHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVK 189
             PLPV                HPFEV+HDF+FDRTRS+RQDL +QN+ N++ I ++E++VK
Sbjct:   130 PLPVLEETLRYLLSLLDSKEHPFEVVHDFIFDRTRSIRQDLSIQNLANERVIYLYEEMVK 189

Query:   190 FHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFY 249
             FHVISH +L+          +H+LN+EQL K LTSLYN+Y+ANR    I+E EAEFRS Y
Sbjct:   190 FHVISHERLQSCSGTSISS-MHHLNMEQLAKTLTSLYNIYDANRKPDYIYENEAEFRSLY 248

Query:   250 VLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEAS 309
             VLLHL+ +   +GE LSLWFR +   ++KSKE+ F R  LR ++MGNY+ FLS  A+EA+
Sbjct:   249 VLLHLNPSSGVMGEPLSLWFRKLTFALVKSKEICFVRNLLRLYRMGNYKNFLSRTASEAT 308

Query:   310 YLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTC 369
             YLQYCI E +I E+R +A+  I+N CYKL PYPL  LS+ L M+E DVE  C+  GL+TC
Sbjct:   309 YLQYCISEHHIREMRLVAVQYINNVCYKLQPYPLLRLSQNLKMKELDVESLCHECGLETC 368

Query:   370 IDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGRQI 407
              D  G  +LP KQ+TF  P+   + Y  +G +++   I
Sbjct:   369 TDPDGFTVLPVKQSTFRSPEDKFKVYDLIGIERIKMSI 406

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2082485 SAC3B "AT3G06290" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 1.3e-37, P = 1.3e-37
 Identities = 100/308 (32%), Positives = 164/308 (53%)

Query:    70 IVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKEVRASDVR 129
             I+G CP MCPE+ER +R+R  DL  +ER+ GD   +S +LAVKK+ RT   + +    +R
Sbjct:   481 IIGVCPDMCPESERGERERKGDLDHYERVDGDRNQTSKSLAVKKYTRTAEREAIL---IR 537

Query:   130 PLPVXXXXXXXXXXXXXXXXHP-FEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
             P+P+                +  F  +++F++DR R++R DL MQ+I N +AI + E+++
Sbjct:   538 PMPILQNTMEYLLSLLDRPYNENFLGMYNFLWDRMRAIRMDLRMQHIFNQEAITLLEQMI 597

Query:   189 KFHVISHHKLRXXXXXXXXXPLH--YLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFR 246
             + H+I+ H+L               +LN+EQ+ K    L+ +Y+ +R        E EFR
Sbjct:   598 RLHIIAMHELCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKKGITVPTEKEFR 657

Query:   247 SFYVLLHLDSN-GQPVGES-LSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTV 304
              +Y LL LD + G  V  S LSL   ++   I ++ E+ FAR   R  + GN+  F   +
Sbjct:   658 GYYALLKLDKHPGYKVEPSELSLDLANMTPEIRQTSEVLFARNVARACRTGNFIAFFR-L 716

Query:   305 AAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAY 364
             A +ASYLQ C++  +  ++R+ AL  +H+        P+  +S  + MEE D+E     +
Sbjct:   717 ARKASYLQACLMHAHFSKLRTQALASLHSGLQINQGLPVSDMSNWIGMEEEDIEALLEYH 776

Query:   365 GLQTCIDE 372
             G    + E
Sbjct:   777 GFSIKVFE 784

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0034399 "nuclear periphery" evidence=IDA

UNIPROTKB|F1NVG3 MCM3AP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 324 (119.1 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 96/307 (31%), Positives = 154/307 (50%)

Query:    70 IVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASDV 128
             IVGTCP MCPE ER  R+    L++FE L G  + +  A A+K++ R+ +  +E    ++
Sbjct:   315 IVGTCPDMCPEKERYMRETRNQLSIFELLLGSDKVNHAA-AIKEYSRSSADQEEPLPHEL 373

Query:   129 RPLPVXXXXXXXXXXXXXXXXHP-FEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKI 187
             RP  V                   +   +DFV++RTR +R+D+  Q++ N   +++ EK 
Sbjct:   374 RPSEVLSMTMDYLVTNIMDQGEGNYREWYDFVWNRTRGIRKDITQQHLCNPLMVSLIEKC 433

Query:   188 VKFHV-ISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEK-EAEF 245
              +FH+  +HH                +N E +TK L SL  +Y+ + ++K I+ K EAEF
Sbjct:   434 TRFHIHCAHHLCEEPMSSFDAK----INNENMTKCLQSLKEMYQ-DLANKGIYCKSEAEF 488

Query:   246 RSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVA 305
             R + VLL+L+      G+ L    +  P  +  S E+ FA QA       N+ RF   V 
Sbjct:   489 RGYNVLLNLNK-----GDILREVQQFHPE-VRNSPEVRFAVQAFAALNSNNFVRFFKLVQ 542

Query:   306 AEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-----YPLGHLSKVLMMEESDVEL- 359
             A ASYL  C++  Y +++R  AL  + N  Y +       +PL HL  +L+ ++ +    
Sbjct:   543 A-ASYLNACLLHCYFNQIRKDALKSL-NIAYTVSTQRCTAFPLDHLVHMLLFKDCEEATD 600

Query:   360 FCNAYGL 366
             F + YGL
Sbjct:   601 FISYYGL 607

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

ZFIN|ZDB-GENE-040715-1 mcm3ap "MCM3 minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 93/306 (30%), Positives = 151/306 (49%)

Query:    71 VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASDVR 129
             VGTCP MCPE ER  R+    L+VFE +  D        A+K++ R+ +  +E    ++R
Sbjct:   686 VGTCPDMCPEKERYMRETRNQLSVFEVVP-DTEKVDHYAAIKEYSRSSADQEEPLPHELR 744

Query:   130 PLPVXXXXXXXXXXXXXXXXHP-FEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
             PLPV                       +DFV++RTR +R+D+  Q++ + + +++ EK  
Sbjct:   745 PLPVLSMTMDYLVTQIMDQGEGNCRDWYDFVWNRTRGIRKDITQQHLCDPETVSLIEKCT 804

Query:   189 KFHV-ISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIH-EKEAEFR 246
             +FH+  +HH  +             +N E +TK L SL  +Y+ + ++K ++  KEAEFR
Sbjct:   805 RFHIHCAHHLCQEPMMSFDAK----INNENMTKCLQSLKEMYQ-DLATKEVYCPKEAEFR 859

Query:   247 SFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA 306
              + VL+ L+ +G  + E     FR     I +S E+ FA Q        N+ RF   V+A
Sbjct:   860 QYNVLVKLN-DGDILREVQQ--FR---KEIRESPEVTFAVQVFAALNSNNFVRFFKLVSA 913

Query:   307 EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-----YPLGHLSKVLMMEES-DVELF 360
              ASYL  CI+  Y ++VR  AL  + N  + +       +P+    ++LM   + +   F
Sbjct:   914 -ASYLSSCILHRYFNQVRRQALKIL-NVAFTVGSQRSTIFPVEDFVRMLMFRNATEATEF 971

Query:   361 CNAYGL 366
                YGL
Sbjct:   972 IQQYGL 977

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1930089 Mcm3ap "minichromosome maintenance deficient 3 (S. cerevisiae) associated protein" [Mus musculus (taxid:10090)]

 Score = 296 (109.3 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 94/330 (28%), Positives = 155/330 (46%)

Query:    69 AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASD 127
             A VGTCP MCPE ER  R+    L+VFE + G  +    A AVK++ R+ +  +E    +
Sbjct:   625 AFVGTCPDMCPEKERYLRETRSQLSVFEVVPGTDQVDHAA-AVKEYSRSSADQEEPLPHE 683

Query:   128 VRPLPVXXXXXXXXXXXXXXXXH-PFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEK 186
             +RP  V                       +DFV++RTR +R+D+  Q++ +   +++ EK
Sbjct:   684 LRPSAVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEK 743

Query:   187 IVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFR 246
               +FH+   H +           +   N E +TK L SL  +Y+  R+       EAEF+
Sbjct:   744 CTRFHIHCAHFMCEEPMSSFDAKI---NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQ 800

Query:   247 SFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA 306
              + VLL+L+      G+ L    +  P  +  S E+ FA QA       N+ RF   V +
Sbjct:   801 GYNVLLNLNK-----GDILREVQQFHPD-VRNSPEVNFAVQAFAALNSNNFVRFFKLVQS 854

Query:   307 EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-----YPLGHLSKVLMMEESDVEL-F 360
              ASYL  C++  Y +++R  AL  + N  Y +       +PL  + ++L+  +S+    F
Sbjct:   855 -ASYLNACLLHCYFNQIRKDALRAL-NVAYTVSTQRSTVFPLDGVVRMLLFRDSEEATNF 912

Query:   361 CNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 390
              N +GL      V +  +   ++ F  P+G
Sbjct:   913 LNYHGLT-----VADGCVELNRSAFLEPEG 937

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=ISO

RGD|1306834 Mcm3ap "minichromosome maintenance complex component 3 associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 293 (108.2 bits), Expect = 3.0e-24, P = 3.0e-24
 Identities = 93/330 (28%), Positives = 154/330 (46%)

Query:    69 AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASD 127
             A VGTCP MCPE ER  R+    L+VFE + G  +    A AVK++ R+ +  +E    +
Sbjct:   630 AFVGTCPDMCPEKERYLRETRSQLSVFEVVPGTDQVDHAA-AVKEYSRSSADQEEPLPHE 688

Query:   128 VRPLPVXXXXXXXXXXXXXXXXH-PFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEK 186
             +RP  V                       +DFV++RTR +R+D+  Q++ +   +++ EK
Sbjct:   689 LRPSAVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEK 748

Query:   187 IVKFHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFR 246
               +FH+   H +           +   N E +TK L SL  +Y+  R+       EAEF+
Sbjct:   749 CTRFHIHCAHFMCEEPMSSFDAKI---NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQ 805

Query:   247 SFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA 306
              + VLL+L+      G+ L    +  P  +  S E+ FA QA       N+ RF   V +
Sbjct:   806 GYNVLLNLNK-----GDILREVQQFHPD-VRNSPEVDFAVQAFAALNSNNFVRFFKLVQS 859

Query:   307 EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-----YPLGHLSKVLMMEE-SDVELF 360
              ASYL  C++  Y +++R  AL  + N  Y +       +PL  + ++L+  +  +   F
Sbjct:   860 -ASYLNACLLHCYFNQIRKDALRAL-NVAYTVSTQRSTVFPLDGVVRMLLFRDCEEATSF 917

Query:   361 CNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 390
              N +GL      V +  +   ++ F  P+G
Sbjct:   918 LNYHGLT-----VADGCVELNRSAFLEPEG 942

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IEA;ISO

UNIPROTKB|I3LCF4 MCM3AP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 8.4e-24, P = 8.4e-24
 Identities = 95/330 (28%), Positives = 157/330 (47%)

Query:    71 VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASDVR 129
             VGTCP MCPE ER  R+    L++FE + G  +    A AVK++ R+ +  +E    ++R
Sbjct:   637 VGTCPDMCPEKERYMRETRSQLSIFEVVPGTDQVDHAA-AVKEYSRSSADQEEPLPHELR 695

Query:   130 PLPVXXXXXXXXXXXXXXXXH-PFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
             P  V                       +DF+++RTR +R+D+  Q++ +   +++ EK  
Sbjct:   696 PSAVLSRTMDYLVTQIMDQKEGSLRDWYDFLWNRTRGIRKDITQQHLCDPVTVSLIEKCT 755

Query:   189 KFHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSF 248
             +FH+   H +           +   N E +T+ L SL  +Y+  R        EAEF+ +
Sbjct:   756 RFHIHCAHFMCEEPMSSFDANI---NSENMTRCLQSLKEMYQDLRVKGVFCAGEAEFQGY 812

Query:   249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308
              VLLHL+      G+ L    +  P+ +  S E+ FA QA       N+ RF   V + A
Sbjct:   813 NVLLHLNK-----GDILREVQQFHPA-VRNSSEVKFAVQAFAALNSNNFVRFFKLVQS-A 865

Query:   309 SYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-----YPLGHLSKVLMM---EESDVELF 360
             SYL  C++  Y +++R  AL  + N  Y + P     +PL  + ++L+    EE+   L 
Sbjct:   866 SYLNACLLHRYFNQIRRDALRAL-NVAYTVSPQRSTVFPLDSVVRMLLFQDCEEATDVLS 924

Query:   361 CNAYGLQTCIDEVGNKLLPTKQTTFCRPKG 390
             C  +GL T  D  G   +   +++F  P+G
Sbjct:   925 C--HGL-TASD--G--CVELNRSSFLEPEG 947

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|O60318 MCM3AP "80 kDa MCM3-associated protein" [Homo sapiens (taxid:9606)]

 Score = 288 (106.4 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 92/328 (28%), Positives = 152/328 (46%)

Query:    71 VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASDVR 129
             VGTC  MCPE ER  R+    L+VFE + G  +    A AVK++ R+ +  +E    ++R
Sbjct:   634 VGTCLDMCPEKERYMRETRSQLSVFEVVPGTDQVDHAA-AVKEYSRSSADQEEPLPHELR 692

Query:   130 PLPVXXXXXXXXXXXXXXXXH-PFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
             PLPV                       +DFV++RTR +R+D+  Q++ +   +++ EK  
Sbjct:   693 PLPVLSRTMDYLVTQIMDQKEGSLRDWYDFVWNRTRGIRKDITQQHLCDPLTVSLIEKCT 752

Query:   189 KFHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSF 248
             +FH+   H +           +   N E +TK L SL  +Y+  R+       EAEF+ +
Sbjct:   753 RFHIHCAHFMCEEPMSSFDAKI---NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGY 809

Query:   249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308
              VLL L+      G+ L    +  P+ +  S E+ FA QA       N+ RF   V + A
Sbjct:   810 NVLLSLNK-----GDILREVQQFHPA-VRNSSEVKFAVQAFAALNSNNFVRFFKLVQS-A 862

Query:   309 SYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-----YPLGHLSKVLMMEESDVEL-FCN 362
             SYL  C++  Y  ++R  AL  + N  Y +       +PL  + ++L+  + +    F  
Sbjct:   863 SYLNACLLHCYFSQIRKDALRAL-NFAYTVSTQRSTIFPLDGVVRMLLFRDCEEATDFLT 921

Query:   363 AYGLQTCIDEVGNKLLPTKQTTFCRPKG 390
              +GL      V +  +   ++ F  P+G
Sbjct:   922 CHGLT-----VSDGCVELNRSAFLEPEG 944

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0003677 "DNA binding" evidence=TAS

GO:0006260 "DNA replication" evidence=TAS

GO:0006606 "protein import into nucleus" evidence=TAS

UNIPROTKB|E1BJE7 MCM3AP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 9.6e-23, P = 9.6e-23
 Identities = 90/328 (27%), Positives = 153/328 (46%)

Query:    71 VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMS-AKEVRASDVR 129
             VGTC  MCPE ER  R+    L+VFE + G  +    A AVK++ R+ +  +E    ++R
Sbjct:   632 VGTCLDMCPEKERYMRETRSQLSVFEVVPGTDQVDHAA-AVKEYSRSSADQEEPLPHELR 690

Query:   130 PLPVXXXXXXXXXXXXXXXXHP-FEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIV 188
             P  V                       +DF+++RTR +R+D+  Q++ +   +++ EK  
Sbjct:   691 PSGVLSRTMDYLVTQIMDQTEGGLRDWYDFLWNRTRGIRKDITQQHLCDPLTVSLIEKCT 750

Query:   189 KFHVISHHKLRXXXXXXXXXPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSF 248
             +FH+   H +           +   N E +TK L SL  +Y+  R+       EAEF+ +
Sbjct:   751 RFHIHCAHFMCEEPMSSFDAKI---NNENMTKCLQSLKEMYQDLRNKGVFCASEAEFQGY 807

Query:   249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA 308
              VLL+L+      G+ L    +  P+ +  S E+ FA QA       N+ RF   V + A
Sbjct:   808 NVLLNLNK-----GDILREVQQFHPA-VRNSPEVKFAVQAFAALNSNNFVRFFKLVQS-A 860

Query:   309 SYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-----YPLGHLSKVLMMEESDVEL-FCN 362
             SYL  C++  Y +++R  AL  + N  Y         +PL  + ++L+  + +    F N
Sbjct:   861 SYLNACLLHCYFNQIRKDALRAL-NVAYTASTQRSTIFPLDGVVRMLLFRDGEEATDFLN 919

Query:   363 AYGLQTCIDEVGNKLLPTKQTTFCRPKG 390
              +GL      V +  +   +++F  P+G
Sbjct:   920 CHGLT-----VSDGCVELNRSSFLEPEG 942

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

POMBASE|SPCC576.05 sac3 "nuclear export factor Sac3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 274 (101.5 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 100/337 (29%), Positives = 143/337 (42%)

Query:    71 VGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSSPALAVKKFCRTMSAKE-VRASDVR 129
             VGTCP MCPE ER QR+   +L  +E ++ +       LAVK F R  +  E    SDVR
Sbjct:   105 VGTCPDMCPEYEREQREYQNNLERWE-INPETGRVDKNLAVKAFHRPAAGNEQALPSDVR 163

Query:   130 PLPVXXXXXXXXXXXXXXXXHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVK 189
             P PV                 P E  H FV DRTRS+RQD  +QN  +  A+   E+I +
Sbjct:   164 PPPVLKKSLDYLVDKIVCGPDPLENTHFFVRDRTRSIRQDFTLQNCRDLDAVACHERIAR 223

Query:   190 FHVISHHKLRXXXXXXXXXPLHYLNLEQLTKA-LTSLYNLYEANRSSKPIHEKEAEFRSF 248
             +H++  H+L                +EQL K  L SL   Y+  R  K     E EFRS+
Sbjct:   224 YHILCIHQLCEKKQFSAQQ-----EVEQLRKGILQSLCEFYDDLRKVKIRCPNEPEFRSY 278

Query:   249 YVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGN------------ 296
              ++ HL  +   V +S  L     P  I   + +  A +     Q  N            
Sbjct:   279 AIITHL-RDPDVVRQSQIL-----PIEIFDDQRVQLALRLSALAQKNNERVGHILPRNTE 332

Query:   297 -----YRRFLSTVAAEA-SYLQYCIIEPYIDEVRSLALCCIHNCCYKLHP-YPLGHLSKV 349
                  Y RF   V + A +YL  C++E +   +R  AL  +       H  +P G L ++
Sbjct:   333 ACPNLYTRFFKLVQSPAVTYLMACLLESHFMSIRKGALKAMRKAFMSAHANFPCGDLKRI 392

Query:   350 LMMEESD-VELFCNAYGLQTCIDEVGNKLLPTKQTTF 385
             L  +  +    F   YGL+   D+ G   +   +T F
Sbjct:   393 LHFDTVEQAASFSRYYGLEVS-DDNGELSINLNKTAF 428

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005643 "nuclear pore" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006611 "protein export from nucleus" evidence=ISO

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
COG5079	646	COG5079, SAC3, Nuclear protein export factor [Intr	3e-40
pfam03399	155	pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p2	8e-12

>gnl|CDD|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]

 Score =  151 bits (382), Expect = 3e-40
 Identities = 108/348 (31%), Positives = 156/348 (44%), Gaps = 41/348 (11%)

Query: 53  DVRDRRRETQEEKQ------EEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSS 106
            +R + RE  E K           VGTC  MCPE ER +R    D++ +E  + + + +S
Sbjct: 50  KLRAKERELLEAKSANALPSAIVFVGTCMDMCPEFEREERVLQNDVSPYE-ANPNVKKAS 108

Query: 107 PALAVKKFCRTMSAKE-VRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRS 165
             LAVK + R  + K     SDVRP  VL +T++YL+ L          +H FV DRTR+
Sbjct: 109 RTLAVKAYHRPAAGKHPELPSDVRPPEVLVKTIDYLVKLCAG--DQLIEMHRFVRDRTRA 166

Query: 166 VRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSL 225
           VRQD  +QN     A+   E+I +FH++  H L      S         LEQL K+L SL
Sbjct: 167 VRQDFTIQNEKGKDAVECHERIARFHILFLHLLHDHPHFSK-----QQELEQLKKSLASL 221

Query: 226 YNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQP-VGESLSLWFRHVPSPIIKSKEMWF 284
             LY+  R+ K     EAEFR++ +L  L   G P     +  W    P  I     +  
Sbjct: 222 IELYDDGRAGKKECPNEAEFRAYAILASL---GDPRYVAGIQGW----PGGIFCDLPVQI 274

Query: 285 ARQALRYFQMGNYR---------------RFLSTVAAEA-SYLQYCIIEPYIDEVRSLAL 328
           A + ++  Q  N+R               RF   + + +  YL  C++E +   +R  AL
Sbjct: 275 ALKLMQLAQSNNFRLLGRRNTEACFNLYTRFFKLIQSPSVQYLMGCLLEKHNISIRGGAL 334

Query: 329 CCIHNCCYKLH-PYPLGHLSKVLMMEESD-VELFCNAYGLQTCIDEVG 374
             +       H   P   LS +L  EE    E FC  YGL+  I++  
Sbjct: 335 KAMEKEIESAHKNIPFVDLSGILDFEEKGEGEEFCKYYGLEIRIEDSV 382

Length = 646

>gnl|CDD|217534 pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p25 family

 Score = 62.7 bits (153), Expect = 8e-12
 Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 10/138 (7%)

Query: 214 NLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVP 273
           +LEQ  + L+ L  LY+           EAEF ++Y+L  L +N  P+ +  +     +P
Sbjct: 28  DLEQFNQCLSQLKELYD---DLLGKSPNEAEFIAYYLLYLLSNN--PISDFHTELEL-LP 81

Query: 274 SPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHN 333
             I     + FA +  +    GNY RF   +  +A YL  C++E ++D +R  AL  I  
Sbjct: 82  DEIRNDPYIQFALELEQALMEGNYHRFFRLL-KKAPYLYACLLERFLDRIRKEALKAI-- 138

Query: 334 CCYKLHPYPLGHLSKVLM 351
                   PL +L+++L 
Sbjct: 139 -SKAYRSIPLSYLAELLG 155

This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
KOG1860	927	consensus Nuclear protein export factor [Intracell	100.0
COG5079	646	SAC3 Nuclear protein export factor [Intracellular	100.0
KOG1861	540	consensus Leucine permease transcriptional regulat	100.0
PF03399	204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	100.0
PF10075	143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	98.5
KOG3151	260	consensus 26S proteasome regulatory complex, subun	97.53
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	95.08
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	90.45
KOG3252	217	consensus Uncharacterized conserved protein [Funct	88.03
KOG2908	380	consensus 26S proteasome regulatory complex, subun	85.78

>KOG1860 consensus Nuclear protein export factor [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2e-72  Score=599.56  Aligned_cols=326  Identities=36%  Similarity=0.603  Sum_probs=286.5

Q ss_pred             ccCCCCCCCCCCc-hHHHHHhhHHhHHhh----------------hcCCccccCCCCCcHHHHHHHHHhccccccccccC
Q 015311           38 SFPKSSSSSSSSS-ANDVRDRRRETQEEK----------------QEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHG  100 (409)
Q Consensus        38 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~k----------------~~~~~vGtC~~MCPe~Er~~R~~~~~l~~fE~~~g  100 (409)
                      |..++++.+.++- ++-+.-.++.++.++                +...+||||+|||||+||++|+++++||+||+.+ 
T Consensus        56 r~~~p~~~~~~~~~~~~l~~~r~~~~~~~~~~~~kd~~~~~~~~~~~~~~vGtC~dMCPE~Er~eRe~~~~l~~yE~~p-  134 (927)
T KOG1860|consen   56 RVARPSSLLERNAMLEPLKGKRTFEQFEMERDALKDLLPKRENLEPAELFVGTCPDMCPEKERYEREREKDLHPYEVVP-  134 (927)
T ss_pred             cccCcccccchhhhhhhhhcccCChHHHHHHhhcccccccccccchhhhhcccchhhCchHHHHHHHHhcCCCeeeecC-
Confidence            8888999988886 555443333333322                2359999999999999999999999999999987 


Q ss_pred             CCCCCCccchhhcccccccCCC-CCCCCCCCHHHHHHHHHHHHH-HHcCCCCCchhhhHHhhhhhhhhhhhhhhhhccCc
Q 015311          101 DPRNSSPALAVKKFCRTMSAKE-VRASDVRPLPVLEETLNYLLS-LLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVND  178 (409)
Q Consensus       101 ~~~~~~~~~aVK~Y~RsaAg~~-~~P~dVRP~~VL~kT~~yLl~-~~~~~~~~~~~~y~Fi~DRlRsIRQDltvQ~i~~~  178 (409)
                      ++++++|.+|||+|+|||||++ |.|+|||||+||.+||+||++ ++...+.++..+|+||||||||||||||+||+.+.
T Consensus       135 ~~~~~~~~~aVK~ysRPAAgke~pLPsdvRP~~VL~~T~dYLl~~v~~~~~~sl~~~y~FvwDRtRAVR~D~t~Q~~~d~  214 (927)
T KOG1860|consen  135 DSKQASPSLAVKEYSRPAAGKERPLPSDVRPPPVLVKTVDYLLGKVLCDKDISLREMYDFVWDRTRAVRQDFTIQNYSDQ  214 (927)
T ss_pred             CCcccCHHHHHHHhcCcccCCCCCCccccCCHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence            6788999999999999999987 589999999999999999996 55666678999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCC
Q 015311          179 KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNG  258 (409)
Q Consensus       179 ~~i~vlE~i~RF~I~s~~~L~~~~~d~~f~~~~~~n~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~~  258 (409)
                      .||.|+|+|+||||++.|+||+++  +.|+  .++|+|||++|+.+|.++|+|++++|+.|+||+||+||++|++|++++
T Consensus       215 ~Av~llE~i~RfhI~~~h~Lce~~--~~Fd--a~~nlEQL~K~l~sL~elYdD~r~~g~~cpnE~EFR~Y~vLl~Lgd~~  290 (927)
T KOG1860|consen  215 EAVELLERIARFHILFRHRLCEEP--EQFD--AQQNLEQLQKCLQSLGELYDDLRKGGIPCPNEPEFRGYYVLLSLGDPQ  290 (927)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCc--ccCC--hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHhcCCch
Confidence            999999999999999999999987  3574  789999999999999999999999999999999999999999999986


Q ss_pred             CchhhhHHHHHhhCCchhhcCHhHHHHHHHHHHHHhCcHHHHHH------------------HHHh-ccchHHHHHHHHh
Q 015311          259 QPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLS------------------TVAA-EASYLQYCIIEPY  319 (409)
Q Consensus       259 ~~l~~~L~~~l~~l~~~i~~s~~v~~Al~l~~a~~~gNy~rFFr------------------Ll~~-~~~~L~~cll~~~  319 (409)
                      .      ..-++.+|+++++++.|++|+.++.|++.|||.+||+                  +..+ ..+||+.|+++.|
T Consensus       291 ~------~~~iq~~~~evr~~~~Vk~al~~~~a~~~nn~~~~~r~~~~~t~a~~~l~~~~~~l~q~p~~~~L~~~v~~~~  364 (927)
T KOG1860|consen  291 V------VRDIQAWPDEVRQDSEVKLALCLRRAFQSNNFRRFFRLSSLRTEALQNLYTRFFKLMQSPALPYLMGCVLELF  364 (927)
T ss_pred             H------HHHHHhcCcccccchhHHHHHHHHHHhccCCeeeeeeccchhHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence            2      1234567999999999999999999999999988864                  4433 5678999999999


Q ss_pred             HHHHHHHHHHHHHhhcc--CCCCcCHHHHHHHHcCCc-hhHHHHHHHhCCeecccCCCc
Q 015311          320 IDEVRSLALCCIHNCCY--KLHPYPLGHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGN  375 (409)
Q Consensus       320 ~~~vR~~AL~~i~~a~y--k~~~~Pl~~L~~~L~fd~-~e~~~fc~~~GL~~~~d~~g~  375 (409)
                      |+.+|..|+++|.++ |  +..++|+.+|..+|+|+. ++...+|+.|||.++.|..+.
T Consensus       365 f~~ir~~al~~~~~~-~~~~~~~vp~~~l~~~l~f~~~e~~~~~~~~y~Leis~~~~~~  422 (927)
T KOG1860|consen  365 FPDIRWAALRAMSHA-YNSKHVPVPLGKLDRILLFDGEEELKVVCNYYGLEISVDDKIV  422 (927)
T ss_pred             HHHHHHHHHHHHHHH-HhccCCCcchhHHHHHHhcCChhhhHhhhhheeeEeecccccc
Confidence            999999999999995 6  446899999999999997 469999999999998765443

>COG5079 SAC3 Nuclear protein export factor [Intracellular trafficking and secretion / Cell division and chromosome partitioning]

Probab=100.00  E-value=2.4e-71  Score=558.39  Aligned_cols=328  Identities=32%  Similarity=0.449  Sum_probs=291.2

Q ss_pred             CccccCCCCCCCCCCchHHHHHhhHHhHH---hhh-----cC-CccccCCCCCcHHHHHHHHHhccccccccccCCCCCC
Q 015311           35 NRFSFPKSSSSSSSSSANDVRDRRRETQE---EKQ-----EE-AIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNS  105 (409)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~-----~~-~~vGtC~~MCPe~Er~~R~~~~~l~~fE~~~g~~~~~  105 (409)
                      -.+|..+|++++.+|.+|.+...++++++   +|+     +. .+||||+|||||+|+.+|..+++|++||.. +..+++
T Consensus        29 r~~m~~l~ss~~d~n~fe~LkklR~kere~~eak~a~~l~~a~vfvGtC~dmCPefEreeR~lqn~v~pyE~n-P~~k~a  107 (646)
T COG5079          29 RVFMVLLFSSTLDTNPFELLKKLRAKERELLEAKSANALPSAIVFVGTCMDMCPEFEREERVLQNDVSPYEAN-PNVKKA  107 (646)
T ss_pred             HHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhhcccccchhheeecchhhhCchHHHHHHHHhcCCchhhcC-cccccc
Confidence            34689999999999999999988888777   332     22 899999999999999999999999999986 456889


Q ss_pred             CccchhhcccccccCCCC-CCCCCCCHHHHHHHHHHHHHHHcCCCCCchhhhHHhhhhhhhhhhhhhhhhccCchhHHHH
Q 015311          106 SPALAVKKFCRTMSAKEV-RASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMF  184 (409)
Q Consensus       106 ~~~~aVK~Y~RsaAg~~~-~P~dVRP~~VL~kT~~yLl~~~~~~~~~~~~~y~Fi~DRlRsIRQDltvQ~i~~~~~i~vl  184 (409)
                      ++++|||.|.|+|||+.| .|+|||||+||++|+|||+..+..  .++...|.|+|||+||||||||+||..+..||+|+
T Consensus       108 ~~~lAvKay~RPAAgk~p~LPsDVRPp~VLvktidylv~~c~~--d~l~e~~~Fv~drtRavrqDftiQN~~g~dAV~c~  185 (646)
T COG5079         108 SRTLAVKAYHRPAAGKHPELPSDVRPPEVLVKTIDYLVKLCAG--DQLIEMHRFVRDRTRAVRQDFTIQNEKGKDAVECH  185 (646)
T ss_pred             chhhHHHHhcCccccCCCCCcccCCChHHHHHHHHHHHHHhcC--cchHHHHHHHHhhhHHHHhhceeecccCchHHHHH
Confidence            999999999999999875 799999999999999999955544  36778999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhh
Q 015311          185 EKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGES  264 (409)
Q Consensus       185 E~i~RF~I~s~~~L~~~~~d~~f~~~~~~n~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~~~~l~~~  264 (409)
                      |+||||||++.|.|++.+   +|+  .+||+|||.+.|.+|.++|++++..+..||||+||+||.||.+|+|+..  +  
T Consensus       186 EriaRfhIl~lh~L~~~p---~Fs--~qqeleQL~ksL~sL~elYdd~r~~~~~cpneaEFraYaiL~slgDp~y--v--  256 (646)
T COG5079         186 ERIARFHILFLHLLHDHP---HFS--KQQELEQLKKSLASLIELYDDGRAGKKECPNEAEFRAYAILASLGDPRY--V--  256 (646)
T ss_pred             HHHHHHHHHHHHHHhcCc---ccc--HHhHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhCCchh--h--
Confidence            999999999999999874   687  5799999999999999999999999999999999999999999999762  1  


Q ss_pred             HHHHHhhCCchhhcCHhHHHHHHHHHHHHhCc---------------HHHHHHHHHh-ccchHHHHHHHHhHHHHHHHHH
Q 015311          265 LSLWFRHVPSPIIKSKEMWFARQALRYFQMGN---------------YRRFLSTVAA-EASYLQYCIIEPYIDEVRSLAL  328 (409)
Q Consensus       265 L~~~l~~l~~~i~~s~~v~~Al~l~~a~~~gN---------------y~rFFrLl~~-~~~~L~~cll~~~~~~vR~~AL  328 (409)
                        .-++.+|..++..+.|+.|+.+..-.+.||               |.|||+++.+ .++||++|+++.|+..+|..||
T Consensus       257 --~~iq~wp~~if~d~~vq~alkl~~laq~nn~r~~~~rnteac~nlytrFfkl~qSpsv~~lmg~lle~h~~sir~~aL  334 (646)
T COG5079         257 --AGIQGWPGGIFCDLPVQIALKLMQLAQSNNFRLLGRRNTEACFNLYTRFFKLIQSPSVQYLMGCLLEKHNISIRGGAL  334 (646)
T ss_pred             --hccccCCccccccchHHHHHHHHHHhhccCeeeccccchhhhhHHHHHHHHHHhCccHHHHHHHHHHHhhHHHHHHHH
Confidence              224457999999999999999988776665               7899999975 7999999999999999999999


Q ss_pred             HHHHhhcc--CCCCcCHHHHHHHHcCCch-hHHHHHHHhCCeecccCCCccc
Q 015311          329 CCIHNCCY--KLHPYPLGHLSKVLMMEES-DVELFCNAYGLQTCIDEVGNKL  377 (409)
Q Consensus       329 ~~i~~a~y--k~~~~Pl~~L~~~L~fd~~-e~~~fc~~~GL~~~~d~~g~~~  377 (409)
                      ++|.++ +  ...++|..+|..+|.|++. +.++||+.||+++..+..|+.-
T Consensus       335 kAm~k~-~~sahk~ipf~~l~~il~f~~~~e~~efckyy~lei~~ed~~~l~  385 (646)
T COG5079         335 KAMEKE-IESAHKNIPFVDLSGILDFEEKGEGEEFCKYYGLEIRIEDSVKLP  385 (646)
T ss_pred             HHHHHH-HHHhhcCCCeehhhhhccccccchhHHHhhhcceeeecccccccc
Confidence            999985 4  2237999999999999985 6999999999999866667653

>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]

Probab=100.00  E-value=4.9e-51  Score=409.17  Aligned_cols=232  Identities=22%  Similarity=0.360  Sum_probs=206.6

Q ss_pred             hcccccccCCCCCCCCCCCHHHHHHHHHHHHHHHcCCCCCchhhhHHhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHH
Q 015311          112 KKFCRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFH  191 (409)
Q Consensus       112 K~Y~RsaAg~~~~P~dVRP~~VL~kT~~yLl~~~~~~~~~~~~~y~Fi~DRlRsIRQDltvQ~i~~~~~i~vlE~i~RF~  191 (409)
                      |.|.|+|+  .|+|+.|||++||++++.-|..+|...     ..|.|++|||||||||||||+|.++|+|+|||+     
T Consensus       286 KsyLRLTs--APdPstVRP~~VL~ksL~~vkdk~k~~-----~~Y~y~CdQ~KSiRQDLTVQ~IrneFTveVYEt-----  353 (540)
T KOG1861|consen  286 KSYLRLTS--APDPSTVRPLEVLKKSLCLVKDKWKAK-----ANYAYLCDQFKSIRQDLTVQRIRNEFTVEVYET-----  353 (540)
T ss_pred             HhHhhhcc--CCCccccCCHHHHHHHHHHHHHHHHhh-----ccHHHHHHHHHHHhhhhhhheeccceeeeeehh-----
Confidence            99999998  689999999999999999999999874     689999999999999999999999999999999     


Q ss_pred             HHHhhhhhccCCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHHhh
Q 015311          192 VISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRH  271 (409)
Q Consensus       192 I~s~~~L~~~~~d~~f~~~~~~n~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~~~~l~~~L~~~l~~  271 (409)
                         |+||+.|.+|          +|+||||+++|+.||...    + ..+-.||.||.|||.+...+.  .+++ ..++.
T Consensus       354 ---HARIALEkGD----------~~EfNQCQtQLk~LY~eg----i-pg~~~EF~AYriLY~i~tkN~--~di~-sll~~  412 (540)
T KOG1861|consen  354 ---HARIALEKGD----------LEEFNQCQTQLKALYSEG----I-PGAYLEFTAYRILYYIFTKNY--PDIL-SLLRD  412 (540)
T ss_pred             ---hhHHHHhcCC----------HHHHHHHHHHHHHHHccC----C-CCchhhHHHHHHHHHHHhcCc--hHHH-HHHHh
Confidence               7788889887          899999999999999554    2 334899999999999876553  1333 34778


Q ss_pred             CCchhhcCHhHHHHHHHHHHHHhCcHHHHHHHHHhccchHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHc
Q 015311          272 VPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLM  351 (409)
Q Consensus       272 l~~~i~~s~~v~~Al~l~~a~~~gNy~rFFrLl~~~~~~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~  351 (409)
                      |.++++.++.|.+||+|..|+..|||++||+|+ ..+|.|..|||+.|+.+.|..||.+|++ +|++ .||+++|++.|.
T Consensus       413 lt~E~ked~~V~hAL~vR~A~~~GNY~kFFrLY-~~AP~M~~yLmdlF~erER~~Al~ii~K-syrP-~i~~~fi~~~la  489 (540)
T KOG1861|consen  413 LTEEDKEDEAVAHALEVRSAVTLGNYHKFFRLY-LTAPNMSGYLMDLFLERERKKALTIICK-SYRP-TITVDFIASELA  489 (540)
T ss_pred             ccHhhccCHHHHHHHHHHHHHHhccHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHHHH-HcCC-CccHHHHhhhhh
Confidence            999999999999999999999999999999998 4899999999999999999999999999 6986 799999999999


Q ss_pred             CCc-hhHHHHHHHhCCeecccCCCccccccC
Q 015311          352 MEE-SDVELFCNAYGLQTCIDEVGNKLLPTK  381 (409)
Q Consensus       352 fd~-~e~~~fc~~~GL~~~~d~~g~~~l~~k  381 (409)
                      |++ ++|..|++.+|++-  +..|..+++.+
T Consensus       490 f~~~e~c~~~l~~~~~~~--~~~g~~~~~~~  518 (540)
T KOG1861|consen  490 FDSMEDCVNFLNEQNLTY--DSLGPQILDKN  518 (540)
T ss_pred             hchHHHHHHHHhccCccc--cccCCcccccc
Confidence            998 56999999999754  55676666533

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]

Probab=100.00  E-value=8.6e-47  Score=351.23  Aligned_cols=201  Identities=39%  Similarity=0.615  Sum_probs=160.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHcCCCCCchhhhHHhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHhhhhhcc
Q 015311          122 EVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSS  201 (409)
Q Consensus       122 ~~~P~dVRP~~VL~kT~~yLl~~~~~~~~~~~~~y~Fi~DRlRsIRQDltvQ~i~~~~~i~vlE~i~RF~I~s~~~L~~~  201 (409)
                      +|+|++|||++||++|++||++++     ++..+|+|||||+||||||+++||+.++++|.|||.+|||||.+       
T Consensus         2 ~p~p~~vRp~~vL~~t~~~l~~~~-----~~~~~y~fi~drlRsiRqDl~vQ~~~~~~~i~v~E~~ar~~i~~-------   69 (204)
T PF03399_consen    2 EPNPSDVRPPEVLKKTLNYLLRKI-----PFKDDYNFIWDRLRSIRQDLTVQNIENDFAIKVYERIARFAIES-------   69 (204)
T ss_dssp             ---------HHHHHHHHHHHHHHT-----CCCCHHHHHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHH-------
T ss_pred             CCChHhCCCHHHHHHHHHHHHHHh-----hhhhhhHHHHHHhHHHHhhHHHHhcCCHHHHHHHHHHHHHHhhc-------
Confidence            578999999999999999999988     34579999999999999999999999999999999999999988       


Q ss_pred             CCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCC-CCchhhhHHHHHhhCCchhhcCH
Q 015311          202 CSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSN-GQPVGESLSLWFRHVPSPIIKSK  280 (409)
Q Consensus       202 ~~d~~f~~~~~~n~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~-~~~l~~~L~~~l~~l~~~i~~s~  280 (409)
                                 .|++||++|+++|+++|++.+. +..++|++||.||+||+++.+. .+.+    ...+..+|++++.+|
T Consensus        70 -----------~d~~qf~~c~~~L~~lY~~~~~-~~~~~~~~ef~~y~lL~~l~~~~~~~~----~~~l~~l~~~~~~~~  133 (204)
T PF03399_consen   70 -----------GDLEQFNQCLSQLKELYDDLRD-LPPSPNEAEFIAYYLLYLLCQNNIPDF----HMELELLPSEILSSP  133 (204)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHHHHH-T---TTHHHHHHHHHHHTT-T---THH----HHHHTTS-HHHHTSH
T ss_pred             -----------CCHHHHHHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHcccchHH----HHHHHHCchhhhcCH
Confidence                       1388999999999999999743 5578999999999999999543 2222    234566788999999


Q ss_pred             hHHHHHHHHHHHHhCcHHHHHHHH-HhccchHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcC
Q 015311          281 EMWFARQALRYFQMGNYRRFLSTV-AAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMM  352 (409)
Q Consensus       281 ~v~~Al~l~~a~~~gNy~rFFrLl-~~~~~~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~f  352 (409)
                      .|++|++|..|+..|||++||+++ .+.+|++.+|+++.|++.||..||++|++ +|+. ++|++.|++||+|
T Consensus       134 ~i~~al~l~~a~~~gny~~ff~l~~~~~~~~l~~~l~~~~~~~iR~~al~~i~~-ay~~-~i~l~~l~~~L~F  204 (204)
T PF03399_consen  134 YIQFALELCRALMEGNYVRFFRLYRSKSAPYLFACLMERFFNRIRLRALQSISK-AYRS-SIPLSFLAELLGF  204 (204)
T ss_dssp             HHHHHHHHHHHH--TTHHHHHHHHT-TTS-HHHHHHHGGGHHHHHHHHHHHHHH-HS-T--EEHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHH-HcCC-CCCHHHHHHHcCC
Confidence            999999999999999999999988 24899999999999999999999999999 5864 6999999999998

The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8

Probab=98.50  E-value=9.7e-07  Score=78.25  Aligned_cols=128  Identities=19%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhhcCCCCchhhhHHHHHhhCCchhhcC-HhHHHHHHHHHHHHhCcHHHHHHHHHh-ccchHHHHHHHHh
Q 015311          242 EAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS-KEMWFARQALRYFQMGNYRRFLSTVAA-EASYLQYCIIEPY  319 (409)
Q Consensus       242 e~EF~aY~iL~~l~~~~~~l~~~L~~~l~~l~~~i~~s-~~v~~Al~l~~a~~~gNy~rFFrLl~~-~~~~L~~cll~~~  319 (409)
                      .+++.+-.++..|-...  +.+ ....+..+|.++..+ |.|+....|..++..++|..|+..++. .-+--..-++..+
T Consensus         3 ~~~~~~~~Ll~~L~~~~--~~d-f~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~   79 (143)
T PF10075_consen    3 NPEIYALILLKYLMQND--LSD-FRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPGF   79 (143)
T ss_dssp             -HHHHHHHHHHHHHTTT--STH-HHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTTH
T ss_pred             chhHHHHHHHHHHHcCC--chH-HHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHHH
Confidence            46777766666665443  222 222345789999995 999999999999999999999997753 1223445567788


Q ss_pred             HHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchhHHHHHHHhCCeecccCCCccc
Q 015311          320 IDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNAYGLQTCIDEVGNKL  377 (409)
Q Consensus       320 ~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e~~~fc~~~GL~~~~d~~g~~~  377 (409)
                      ...||..++..+.+ +|.  .++++.++++||+++.|+.++|+..|=++.  ++|..+
T Consensus        80 ~~~iR~~i~~~i~~-aY~--sIs~~~la~~Lg~~~~el~~~~~~~gW~~d--~~~~~~  132 (143)
T PF10075_consen   80 EDTIRERIAHLISK-AYS--SISLSDLAEMLGLSEEELEKFIKSRGWTVD--GDGVLF  132 (143)
T ss_dssp             HHHHHHHHHHHHHH-H-S--EE-HHHHHHHTTS-HHHHHHHHHHHT-EE-------EE
T ss_pred             HHHHHHHHHHHHHH-HHh--HcCHHHHHHHhCCCHHHHHHHHHHcCCEEC--CCccEE
Confidence            99999999999998 585  699999999999997789999999999883  445443

In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.

>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.0034  Score=59.95  Aligned_cols=147  Identities=15%  Similarity=0.244  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHHhhCCchhhcC-HhHHHHHHHHHHHH
Q 015311          215 LEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKS-KEMWFARQALRYFQ  293 (409)
Q Consensus       215 ~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~~~~l~~~L~~~l~~l~~~i~~s-~~v~~Al~l~~a~~  293 (409)
                      .+-|..-+.+|+..|-|....=..+++.--+.+.++|+.|..+..  .+ +-..+..||..++.+ |.|++++++=..++
T Consensus        72 ~~sFerY~~Qlk~YY~d~~~~l~~S~~~~~l~GLnLL~LLsqNRi--ae-FHteLe~lp~~~l~~~~~I~~~v~LEq~~M  148 (260)
T KOG3151|consen   72 FESFERYMNQLKPYYFDYNEKLSESEKKHKLLGLNLLYLLSQNRI--AE-FHTELELLPKKILQHNPYISHPVSLEQSLM  148 (260)
T ss_pred             HHHHHHHHHHhcchhcccccccCcchhhhHHHHHHHHHHHHhccH--HH-HHHHHHhccHHHhhccchhhhHHHHHHHHH
Confidence            567888889999999887654335677888999999998877652  11 223466789888776 99999999999999


Q ss_pred             hCcHHHHHHHHHhccch-HHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCc-hhHHHHHHHhCCee
Q 015311          294 MGNYRRFLSTVAAEASY-LQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYGLQT  368 (409)
Q Consensus       294 ~gNy~rFFrLl~~~~~~-L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~-~e~~~fc~~~GL~~  368 (409)
                      .|-|-+.|...+ .+|. --...|+.....||...-.++-+ +|.  .+|++..+.+|.|+. .+...|...-+-.+
T Consensus       149 EGaYnKv~~a~~-s~p~~~y~~FmdIl~~tiRdEIA~c~EK-sYd--~l~~s~a~~~L~f~~~~e~~~~~~~r~W~l  221 (260)
T KOG3151|consen  149 EGAYNKVLSAKQ-SIPSEEYTYFMDILLDTIRDEIAGCIEK-SYD--KLSASDATQMLLFNNDKELKKFATERQWPL  221 (260)
T ss_pred             hhHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHh--hcCHHHHHHHHhcCChHHHHHHHHhcCCcc
Confidence            999999998654 4553 34567788888899888888888 575  489999999999995 46888888777554

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=95.08  E-value=0.18  Score=41.08  Aligned_cols=72  Identities=21%  Similarity=0.372  Sum_probs=53.8

Q ss_pred             HHHHHHHhCcHHHHHHHHHhc------cchHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchhHHHH
Q 015311          287 QALRYFQMGNYRRFLSTVAAE------ASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELF  360 (409)
Q Consensus       287 ~l~~a~~~gNy~rFFrLl~~~------~~~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e~~~f  360 (409)
                      ++..|+..||+..|...+...      .+++. -.+......+|..+|..+.+ .|+  .++++.+++.|+++..+++.+
T Consensus         5 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~-~~~~~l~~~i~~~~l~~l~~-~y~--~i~~~~ia~~l~~~~~~vE~~   80 (105)
T PF01399_consen    5 ELLRAFRSGDLQEFEEFLEKHSESLFKDPFLA-EYVEQLKEKIRRRNLRQLSK-PYS--SISISEIAKALQLSEEEVESI   80 (105)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHH-HHHHHHHHHHHHHHHHHHHH-C-S--EEEHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHcCccHH-HHHHHHHHHHHHHHHHHHHH-Hhc--ccchHHHHHHhccchHHHHHH
Confidence            577899999999999988543      12223 36667788899999999987 575  699999999999998765554


Q ss_pred             HH
Q 015311          361 CN  362 (409)
Q Consensus       361 c~  362 (409)
                      +.
T Consensus        81 l~   82 (105)
T PF01399_consen   81 LI   82 (105)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.45  E-value=9.1  Score=38.18  Aligned_cols=142  Identities=18%  Similarity=0.249  Sum_probs=100.2

Q ss_pred             hhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCC--chhhhHHHHHhhCCchhhcCHhHHHHHHHH
Q 015311          212 YLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQ--PVGESLSLWFRHVPSPIIKSKEMWFARQAL  289 (409)
Q Consensus       212 ~~n~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~~~--~l~~~L~~~l~~l~~~i~~s~~v~~Al~l~  289 (409)
                      |+--++|.+.-+...+.++....+|  +|.+.-..-|-+|.++.-...  .+.       .+-..+..++|+|.---.+.
T Consensus       241 Hlreg~fe~AhTDFFEAFKNYDEsG--spRRttCLKYLVLANMLmkS~iNPFD-------sQEAKPyKNdPEIlAMTnlv  311 (440)
T KOG1464|consen  241 HLREGEFEKAHTDFFEAFKNYDESG--SPRRTTCLKYLVLANMLMKSGINPFD-------SQEAKPYKNDPEILAMTNLV  311 (440)
T ss_pred             ccccchHHHHHhHHHHHHhcccccC--CcchhHHHHHHHHHHHHHHcCCCCCc-------ccccCCCCCCHHHHHHHHHH
Confidence            4556788888888888776655444  577888888888877532110  110       01123556789988777899


Q ss_pred             HHHHhCcHHHHHHHHHhc------cchHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchhHHHHHHH
Q 015311          290 RYFQMGNYRRFLSTVAAE------ASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELFCNA  363 (409)
Q Consensus       290 ~a~~~gNy~rFFrLl~~~------~~~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e~~~fc~~  363 (409)
                      .|++.++...|=+++++.      .||+- --++-.+..||.+.|--+.+ -|.  .+-+.+|++-|..+..|..+++-.
T Consensus       312 ~aYQ~NdI~eFE~Il~~~~~~IM~DpFIR-eh~EdLl~niRTQVLlkLIk-PYt--~i~Ipfis~~Lnv~~~dV~~LLV~  387 (440)
T KOG1464|consen  312 AAYQNNDIIEFERILKSNRSNIMDDPFIR-EHIEDLLRNIRTQVLLKLIK-PYT--NIGIPFISKELNVPEADVESLLVS  387 (440)
T ss_pred             HHHhcccHHHHHHHHHhhhccccccHHHH-HHHHHHHHHHHHHHHHHHhc-ccc--ccCchhhHhhcCCCHHHHHHHHHH
Confidence            999999999999888642      34433 34555678899999988887 575  477788999999998887777666


Q ss_pred             hCC
Q 015311          364 YGL  366 (409)
Q Consensus       364 ~GL  366 (409)
                      +=|
T Consensus       388 ~IL  390 (440)
T KOG1464|consen  388 CIL  390 (440)
T ss_pred             HHh
Confidence            644

>KOG3252 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.03  E-value=3.8  Score=38.24  Aligned_cols=101  Identities=18%  Similarity=0.236  Sum_probs=74.4

Q ss_pred             CCchhhcCHhHHHHHHHHHHHHhCcHHHHHHHHHhccchHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHc
Q 015311          272 VPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLM  351 (409)
Q Consensus       272 l~~~i~~s~~v~~Al~l~~a~~~gNy~rFFrLl~~~~~~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~  351 (409)
                      +++....+.+++.-+.+-..+.++||..|+.... .-+.|.. -+--|=..||..|=..+.- .|  +.+|-..|+++||
T Consensus        88 i~~~~~~ee~~r~ii~L~~~LEt~~Fq~FW~~~~-~N~~mle-~itGFedsvr~yachvv~i-Ty--QkI~k~lLaellG  162 (217)
T KOG3252|consen   88 IDERVQMEEPFRSIIDLGDYLETCRFQQFWQEAD-ENRDMLE-GITGFEDSVRKYACHVVGI-TY--QKIDKWLLAELLG  162 (217)
T ss_pred             cCHHHhcccchhHHHhHHHHHhhchHHHHhhhhc-cchHHhc-CCCcHHHHHHHHHHHheec-hH--hhchHHHHHHhhC
Confidence            5677778888999999999999999999997653 2222221 1333556777777776655 45  3589999999999


Q ss_pred             CC-chhHHHHHHHhCCeecccCCCccccc
Q 015311          352 ME-ESDVELFCNAYGLQTCIDEVGNKLLP  379 (409)
Q Consensus       352 fd-~~e~~~fc~~~GL~~~~d~~g~~~l~  379 (409)
                      -- |.+++.+...+|-..  +++|..++.
T Consensus       163 ~~sDs~le~~~~~~GW~a--~e~G~ifv~  189 (217)
T KOG3252|consen  163 GLSDSQLEVWMTKYGWIA--DESGQIFVA  189 (217)
T ss_pred             cccHHHHHHHHHHcccee--cCCceEEEe
Confidence            54 567999999999875  677877664

>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]

Probab=85.78  E-value=45  Score=34.18  Aligned_cols=86  Identities=20%  Similarity=0.222  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHh--ccchHHHHHHHHhHHHHHHHHHHHHHhhc-cCCCCcCHHHHHHHHcCCchhHH
Q 015311          282 MWFARQALRYFQMGNYRRFLSTVAA--EASYLQYCIIEPYIDEVRSLALCCIHNCC-YKLHPYPLGHLSKVLMMEESDVE  358 (409)
Q Consensus       282 v~~Al~l~~a~~~gNy~rFFrLl~~--~~~~L~~cll~~~~~~vR~~AL~~i~~a~-yk~~~~Pl~~L~~~L~fd~~e~~  358 (409)
                      .++-..+..|+..||..+|+++...  ..|-|.+.- .....++|..||.-|+-.- -....+|++.|++....+..|++
T Consensus       234 ~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~e-~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eVE  312 (380)
T KOG2908|consen  234 REWLKDLLIAFNSGDLKRFESLKGVWGKQPDLASNE-DFLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPNKEVE  312 (380)
T ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHHH
Confidence            4667788999999999999998753  455665433 3345788888988886421 12247999999999999876654


Q ss_pred             H-HHHHhCCee
Q 015311          359 L-FCNAYGLQT  368 (409)
Q Consensus       359 ~-fc~~~GL~~  368 (409)
                      - .+++.++-.
T Consensus       313 ~LVMKAlslgL  323 (380)
T KOG2908|consen  313 LLVMKALSLGL  323 (380)
T ss_pred             HHHHHHHhccc
Confidence            3 356666643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	409
3t5v_A	316	Sac3:thp1:sem1 Complex Length = 316		7e-10

>pdb|3T5V|A Chain A, Sac3:thp1:sem1 Complex Length = 316

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 24/226 (10%)
Query: 158 FVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRXXXXXXXXXPLHYLNLEQ 217
           F++DR RS+RQD   QN    +A++  E+IV+ H++  H +                LEQ
Sbjct: 35  FLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKSNVEFSLQQ----ELEQ 90
Query: 218 LTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHL-----DSNGQPVGE--------S 264
           L K+L +L  +Y+  RSS      EAEFR++ +L  +     D N Q + +         
Sbjct: 91  LHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQYDENIQRLPKHIFQDKLVQ 150
Query: 265 LSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEA-SYLQYCIIEPYIDEV 323
           ++L FR V S    ++  +   +    F    Y RF   + + +   L    ++ ++ ++
Sbjct: 151 MALCFRRVISNSAYTERGFVKTENCLNF----YARFFQLMQSPSLPLLMGFFLQMHLTDI 206
Query: 324 RSLALCCIHNCCYKLH-PYPLGHLSKVLMMEE-SDVELFCNAYGLQ 367
           R  AL  + +   K H P P  +L  +L+     ++  FCN Y ++
Sbjct: 207 RFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIE 252

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	2e-47
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-05

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae} Length = 316

 Score =  164 bits (415), Expect = 2e-47
 Identities = 68/283 (24%), Positives = 118/283 (41%), Gaps = 31/283 (10%)

Query: 125 ASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMF 184
            SDVRP  +L +TL+Y++  L +T         F++DR RS+RQD   QN    +A++  
Sbjct: 5   PSDVRPPHILVKTLDYIVDNLLTT---LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCN 61

Query: 185 EKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAE 244
           E+IV+ H++  H +  S    S        LEQL K+L +L  +Y+  RSS      EAE
Sbjct: 62  ERIVRIHLLILHIMVKSNVEFS----LQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAE 117

Query: 245 FRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQ----------- 293
           FR++ +L  +               + +P  I + K +  A    R              
Sbjct: 118 FRAYALLSKIRDP------QYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVK 171

Query: 294 ----MGNYRRFLSTV-AAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLH-PYPLGHLS 347
               +  Y RF   + +     L    ++ ++ ++R  AL  + +   K H P P  +L 
Sbjct: 172 TENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLE 231

Query: 348 KVLMME-ESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPK 389
            +L+     ++  FCN Y ++    +  +       +      
Sbjct: 232 NMLLFNNRQEIIEFCNYYSIEIINGDAADLKTLQHYSHKLSET 274

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 9e-10
 Identities = 44/321 (13%), Positives = 94/321 (29%), Gaps = 93/321 (28%)

Query: 56  DRRRETQEEKQEEAIVGTCPFMCPEAERLQRQRLRDLAVFERLHGDPRNSS-PALAVKKF 114
           D  +    +K    I  +   + P      R+    L+VF      P ++  P + +   
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPA---EYRKMFDRLSVF------PPSAHIPTILLSLI 395

Query: 115 CRTMSAKEVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQN 174
              +   +V         V+ +   Y L      E     I     +         +   
Sbjct: 396 WFDVIKSDVMV-------VVNKLHKYSLVEKQPKESTIS-IPSIYLE---------LKVK 438

Query: 175 IVNDKAINMFEKIVKFH--VISHHKLRSSCSSSSISPLH-------YLNLEQLTKALTSL 225
           + N+ A+         H  ++ H+ +  +  S  + P +       ++            
Sbjct: 439 LENEYAL---------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG----------- 478

Query: 226 YNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKEMWFA 285
           ++L           E+   FR  +    LD             FR +   I      W A
Sbjct: 479 HHLKNIEHP-----ERMTLFRMVF----LD-------------FRFLEQKIRHDSTAWNA 516

Query: 286 RQALR--YFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPL 343
             ++     Q+  Y+ ++            C  +P  + + +  L  +      L     
Sbjct: 517 SGSILNTLQQLKFYKPYI------------CDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 344 GHLSKVLMMEESDVELFCNAY 364
             L ++ +M E +  +F  A+
Sbjct: 565 TDLLRIALMAEDE-AIFEEAH 584

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 75/474 (15%), Positives = 135/474 (28%), Gaps = 160/474 (33%)

Query: 48  SSSANDVRDRRRETQE-EKQEEAIVGTCPFMCP-EAERLQ-----RQRLRDLAVFER--L 98
           S    + R     T+   +Q + +             RLQ     RQ L +L   +   +
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 99  HGDPR--NSSPALAVKKFCRTMSAKEVRASDV---------RPLPVLE--ETLNYLL--- 142
            G      +  AL V   C +   +      +          P  VLE  + L Y +   
Sbjct: 156 DGVLGSGKTWVALDV---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 143 --SLLDSTEHPFEVIHDFVFDRTRSVRQD-------LIMQNIVNDKAINMFE---KIV-- 188
             S  D + +    IH  +    R + +        L++ N+ N KA N F    KI+  
Sbjct: 213 WTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 189 --------------KFHVISHHKLRS--------------SCSSS-------SISPLH-- 211
                           H+   H   +               C          + +P    
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 212 -----------------YLNLEQLTKAL-TSLYNLYEANRSSKPIHEKEAEFRSFYVLLH 253
                            ++N ++LT  + +SL  L            + AE+R  +  L 
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL------------EPAEYRKMFDRLS 379

Query: 254 LDSNGQPVGESL--SLWF---RHVPSPIIKSKEMWFARQAL--------RYFQMGNYRRF 300
           +      +   L   +WF   +     ++        + +L               Y   
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK----LHKYSLVEKQPKESTISIPSIYLEL 435

Query: 301 LSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYP--------LG-HLSKVLM 351
              +  E + L   I++ Y +  ++            L P          +G HL  +  
Sbjct: 436 KVKLENEYA-LHRSIVDHY-NIPKTF-------DSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 352 MEESDVELFCNAYGLQTCIDE--VGNKLLPTKQTTFCRPKGGLQNYSFLGFQQL 403
            E   + LF   +     +D   +  K+     +T     G + N      QQL
Sbjct: 487 PER--MTLFRMVF-----LDFRFLEQKIRHD--STAWNASGSILNT----LQQL 527

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 8/31 (25%)

Query: 85  QRQRLRDLAVFE---RLHGDPRNSSPALAVK 112
           ++Q L+ L   +   +L+ D  +S+PALA+K
Sbjct: 18  EKQALKKL---QASLKLYAD--DSAPALAIK 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	100.0
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	99.94
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	99.93
1rz4_A	226	Eukaryotic translation initiation factor 3 subuni;	98.17
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.01
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	91.17
4b4t_O	393	26S proteasome regulatory subunit RPN9; hydrolase,	89.23
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.84
3t5v_B	455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	87.48

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-62  Score=486.55  Aligned_cols=259  Identities=26%  Similarity=0.384  Sum_probs=223.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHcCCCCCchhhhHHhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHhhhhhcc
Q 015311          122 EVRASDVRPLPVLEETLNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVNDKAINMFEKIVKFHVISHHKLRSS  201 (409)
Q Consensus       122 ~~~P~dVRP~~VL~kT~~yLl~~~~~~~~~~~~~y~Fi~DRlRsIRQDltvQ~i~~~~~i~vlE~i~RF~I~s~~~L~~~  201 (409)
                      +|+|++||||+||++||+||+++|...   +..+|+||||||||||||||||++.++++|.|||+||||||+|+|+||..
T Consensus         2 ~P~P~~vRP~~vL~~Tl~yL~~~~~~~---~~~~y~fi~Dr~RsIRqDltvQ~i~~~~~v~v~E~~aRf~i~~~~~L~~~   78 (316)
T 3t5v_A            2 SPLPSDVRPPHILVKTLDYIVDNLLTT---LPESEGFLWDRMRSIRQDFTYQNYSGPEAVDCNERIVRIHLLILHIMVKS   78 (316)
T ss_dssp             ----CCCCCHHHHHHHHHHHHHHTGGG---TTTCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCChhhcCCHHHHHHHHHHHHHHHHhc---chhhhHHHHhhhhhhccCceeeccCCchHHHHHHHHHHHHHHHHHHHhhC
Confidence            689999999999999999999987653   35799999999999999999999999999999999999999999999986


Q ss_pred             CCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHHhhCCchhhcCHh
Q 015311          202 CSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSPIIKSKE  281 (409)
Q Consensus       202 ~~d~~f~~~~~~n~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~~~~l~~~L~~~l~~l~~~i~~s~~  281 (409)
                      .  .+|+  .++|.+|+++||++|+++|++.++.|..++||+||+||+||++|++++      +...+..||++++++|.
T Consensus        79 ~--~~f~--~~~~~eQl~~~L~sL~~lY~d~~~~~~~~~ne~EF~aY~lL~~l~~~~------~~~~l~~Lp~~i~~~p~  148 (316)
T 3t5v_A           79 N--VEFS--LQQELEQLHKSLITLSEIYDDVRSSGGTCPNEAEFRAYALLSKIRDPQ------YDENIQRLPKHIFQDKL  148 (316)
T ss_dssp             C--CCCC--HHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHSTTCTH------HHHHHTTSCHHHHTSHH
T ss_pred             C--Cccc--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhccch------HHHHHHhCCHHHhcCHH
Confidence            4  3464  789999999999999999999988888999999999999999998753      22456789999999999


Q ss_pred             HHHHHHHHHHHH---------------hCcHHHHHHHHHh-ccchHHHHHHHHhHHHHHHHHHHHHHhhccC--CCCcCH
Q 015311          282 MWFARQALRYFQ---------------MGNYRRFLSTVAA-EASYLQYCIIEPYIDEVRSLALCCIHNCCYK--LHPYPL  343 (409)
Q Consensus       282 v~~Al~l~~a~~---------------~gNy~rFFrLl~~-~~~~L~~cll~~~~~~vR~~AL~~i~~a~yk--~~~~Pl  343 (409)
                      |++|+.+..|+.               .|||++||+++++ .+|||++|+|+.||++||..||++|++| |+  ..++|+
T Consensus       149 Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~ka-y~~k~~~~pl  227 (316)
T 3t5v_A          149 VQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHT-LNKKHKPIPF  227 (316)
T ss_dssp             HHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHH-SCTTCCCEEH
T ss_pred             HHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCCcCH
Confidence            999999999986               4899999999964 3899999999999999999999999995 63  358999


Q ss_pred             HHHHHHHcCCc-hhHHHHHHHhCCeecccCCCccc-cccCCCccCCCCCCcccc
Q 015311          344 GHLSKVLMMEE-SDVELFCNAYGLQTCIDEVGNKL-LPTKQTTFCRPKGGLQNY  395 (409)
Q Consensus       344 ~~L~~~L~fd~-~e~~~fc~~~GL~~~~d~~g~~~-l~~k~~~f~~p~~~~~~~  395 (409)
                      ++|+++|+|++ +|+.+||++|||++..+ +|..+ ..++++.|.+++..+.+-
T Consensus       228 ~~L~~~L~Fds~ee~~~F~~~~gl~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~  280 (316)
T 3t5v_A          228 IYLENMLLFNNRQEIIEFCNYYSIEIING-DAADLKTLQHYSHKLSETQPLKKT  280 (316)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHTTCCEETT-TEECGGGCCCSSSSCTTSCCCCCC
T ss_pred             HHHHHHhCCCCHHHHHHHHHHCCCeEeCC-CCchHHhhcchhccccccCCCcch
Confidence            99999999986 57999999999999743 45433 235677777776655543

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=99.94  E-value=5.4e-26  Score=215.46  Aligned_cols=203  Identities=16%  Similarity=0.203  Sum_probs=165.4

Q ss_pred             HHHHHHHHcCCCCCchhhhHHhhhhhhhhhhhhhhhhccC--------chhHHHHHHHHHHHHHHhhhhhccCCCCCCCh
Q 015311          138 LNYLLSLLDSTEHPFEVIHDFVFDRTRSVRQDLIMQNIVN--------DKAINMFEKIVKFHVISHHKLRSSCSSSSISP  209 (409)
Q Consensus       138 ~~yLl~~~~~~~~~~~~~y~Fi~DRlRsIRQDltvQ~i~~--------~~~i~vlE~i~RF~I~s~~~L~~~~~d~~f~~  209 (409)
                      ++.|.+.+..+      .|+.+++.+..|++|||.|++..        ..|.+|||.        +++++.+.+|     
T Consensus        11 l~~L~~~~~~~------d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~--------~a~~al~~~D-----   71 (229)
T 4b0z_A           11 LNHLADLYDRK------DWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEY--------GVLVSIQTCD-----   71 (229)
T ss_dssp             SHHHHHHHHTT------CHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHH--------HHHHHHHTTC-----
T ss_pred             HHHHHHHHHhc------cHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH--------HHHHHHHcCC-----
Confidence            34566666653      58999999999999999999842        368899999        4455555544     


Q ss_pred             hhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCCchhhhHHHHHhhCCch--hhcCHhHHHHHH
Q 015311          210 LHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQPVGESLSLWFRHVPSP--IIKSKEMWFARQ  287 (409)
Q Consensus       210 ~~~~n~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~~~~l~~~L~~~l~~l~~~--i~~s~~v~~Al~  287 (409)
                           .++|++|+++|+.+|.+..   ..++++.||.+|+||+.|..++.  .+ +...+..+|.+  +.++|.|++|++
T Consensus        72 -----~~~F~~~~~qLk~~Y~~~~---~~s~~~~e~~~~~LL~lL~~~~~--~e-f~~~le~l~~~~~~~~~~~I~~al~  140 (229)
T 4b0z_A           72 -----IESFARYASQVIPFYHDSL---VPSSRMGLVTGLNLLYLLSENRI--AE-FHTALESVPDKSLFERDPYVEWVIS  140 (229)
T ss_dssp             -----HHHHHHHHHHHHHHHSSCC---CCCTTHHHHHHHHHHHHHHTTCH--HH-HHHHHHHCSCTTHHHHCHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHccC---CCCccHHHHHHHHHHHHHHcCCc--hH-HHHHHHhcChHHHhhcCHHHHHHHH
Confidence                 8999999999999998753   35789999999999999876652  22 33446667654  578999999999


Q ss_pred             HHHHHHhCcHHHHHHHHHhccc-hHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCc-hhHHHHHHHhC
Q 015311          288 ALRYFQMGNYRRFLSTVAAEAS-YLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYG  365 (409)
Q Consensus       288 l~~a~~~gNy~rFFrLl~~~~~-~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~-~e~~~fc~~~G  365 (409)
                      |.+|+..|||.+||++++ .+| ...+|+|+.+++.+|..|+.+|.+ +|.  .+|+++++++|+|++ +|+++||+.+|
T Consensus       141 l~~al~~GnY~kff~l~~-~~p~~~~~~~~~~l~~~vR~~~l~~i~k-aY~--~i~l~~~~~~L~f~s~~e~~~f~~~~g  216 (229)
T 4b0z_A          141 LEQNVMEGAFDKVASMIR-SCNFPEFSYFMKIVMSMVRNEIATCAEK-VYS--EIPLSNATSLLYLENTKETEKLAEERG  216 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHH-TCCCGGGHHHHHHHHHHHHHHHHHHHHH-HCS--EEEHHHHHHHTTCSSHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHh-cCccchHHHHHHHHHHHHHHHHHHHHHH-HcC--CCCHHHHHHHhCCCCHHHHHHHHHHcC
Confidence            999999999999999885 565 456999999999999999999999 584  699999999999987 57999999999


Q ss_pred             CeecccCCCccc
Q 015311          366 LQTCIDEVGNKL  377 (409)
Q Consensus       366 L~~~~d~~g~~~  377 (409)
                      ..+.   ||.++
T Consensus       217 w~i~---dg~i~  225 (229)
T 4b0z_A          217 WDIR---DGVIY  225 (229)
T ss_dssp             CEEE---TTEEE
T ss_pred             CEEe---CCEEe
Confidence            9984   56443

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.9e-25  Score=217.01  Aligned_cols=190  Identities=12%  Similarity=0.140  Sum_probs=138.1

Q ss_pred             hhHHhhhhhhhhhhhhhhhhccCc--------------hhHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhhcHHHHHH
Q 015311          155 IHDFVFDRTRSVRQDLIMQNIVND--------------KAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTK  220 (409)
Q Consensus       155 ~y~Fi~DRlRsIRQDltvQ~i~~~--------------~~i~vlE~i~RF~I~s~~~L~~~~~d~~f~~~~~~n~eql~k  220 (409)
                      .|+.+.+.|..++++||.|++-.+              .|.+|||.        +++++.+.+|          +++|++
T Consensus        19 d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~--------~a~~si~~~D----------~~~F~~   80 (274)
T 4b4t_T           19 DYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEV--------GALASIQTFN----------FDSFEN   80 (274)
T ss_dssp             ------------------------------------------CHHH--------HHHCCSSCSS----------HHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHH--------HHHHHHHcCC----------HHHHHH
Confidence            578888999999999999887421              35689999        6667667655          889999


Q ss_pred             HHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcCCCC-chhhhHHHHHhhCC---chhhcCHhHHHHHHHHHHHHhCc
Q 015311          221 ALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDSNGQ-PVGESLSLWFRHVP---SPIIKSKEMWFARQALRYFQMGN  296 (409)
Q Consensus       221 cL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~~~~-~l~~~L~~~l~~l~---~~i~~s~~v~~Al~l~~a~~~gN  296 (409)
                      |+++|+.+|.+.+.....++|+.||.||+|||.|..++. .+.    ..+..||   .++.++|.|++|++|..|+..||
T Consensus        81 ~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh----~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGn  156 (274)
T 4b4t_T           81 YFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFH----SELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGS  156 (274)
T ss_dssp             HHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHH----HHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHH----HHHHhcchhhHhHhcChHHHHHHHHHHHHHcCC
Confidence            999999999998776667899999999999998865442 232    2344566   46788999999999999999999


Q ss_pred             HHHHHHHHHh--ccchHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCc-hhHHHHHHHhCCeec
Q 015311          297 YRRFLSTVAA--EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEE-SDVELFCNAYGLQTC  369 (409)
Q Consensus       297 y~rFFrLl~~--~~~~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~-~e~~~fc~~~GL~~~  369 (409)
                      |.+||+++++  ..+++.+|+|+.+++.+|..|+.+|.+ +|+  ++|+..++++|+|++ +|+.+||+.+|..+.
T Consensus       157 Y~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~k-aY~--~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~  229 (274)
T 4b4t_T          157 YQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTEL-SYD--FLPLSNIKALLFFNNEKETEKFALERNWPIV  229 (274)
T ss_dssp             SHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH-HCS--SCCHHHHHHHHTCCSHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHh--hcCHHHHHHHhCCCCHHHHHHHHHHcCCEEe
Confidence            9999999864  235789999999999999999999999 585  699999999999997 479999999999884

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18

Probab=98.17  E-value=3.7e-05  Score=72.27  Aligned_cols=166  Identities=16%  Similarity=0.184  Sum_probs=112.0

Q ss_pred             CchhHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhhcHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhhcC
Q 015311          177 NDKAINMFEKIVKFHVISHHKLRSSCSSSSISPLHYLNLEQLTKALTSLYNLYEANRSSKPIHEKEAEFRSFYVLLHLDS  256 (409)
Q Consensus       177 ~~~~i~vlE~i~RF~I~s~~~L~~~~~d~~f~~~~~~n~eql~kcL~sL~~lY~d~~~~~~~~~ne~EF~aY~iL~~l~~  256 (409)
                      |+..+..+|+.+.       ..+.++.   |+      .+ -+-++.   .+|.-.     +.....+..+..+|..|.+
T Consensus        22 np~~l~~le~Yv~-------qq~~~~~---YD------~~-anlalL---klYq~~-----p~~~~~~ii~~iLlk~L~~   76 (226)
T 1rz4_A           22 NPENLATLERYVE-------TQAKENA---YD------LE-ANLAVL---KLYQFN-----PAFFQTTVTAQILLKALTN   76 (226)
T ss_dssp             CGGGHHHHHHHHH-------HHHHHTC---CC------HH-HHHHHH---HHHHHS-----GGGCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHH-------HHHhccc---cc------HH-HHHHHH---HHHhcC-----CcccchhHHHHHHHHHHHc
Confidence            6888999999543       2223322   32      11 222333   344332     2344578888877766644


Q ss_pred             CC-CchhhhHHHHHhhCCchhhcCHhHHHHHHHHHHHHhCcHHHHHHHHHhccchHHHHHHHHhHHHHHHHHHHHHHhhc
Q 015311          257 NG-QPVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCC  335 (409)
Q Consensus       257 ~~-~~l~~~L~~~l~~l~~~i~~s~~v~~Al~l~~a~~~gNy~rFFrLl~~~~~~L~~cll~~~~~~vR~~AL~~i~~a~  335 (409)
                      .. +++.    ..+.-||+.+..++.|+..+.+...+..|+|..||+.+.+. +-+ ...+..|...||......+.+ +
T Consensus        77 ~p~~DF~----~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~-~~l-~~~i~gf~dsIR~~I~~~i~~-a  149 (226)
T 1rz4_A           77 LPHTDFT----LCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN-MDL-LEGITGFEDSVRKFICHVVGI-T  149 (226)
T ss_dssp             TTSTHHH----HHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTT-CHH-HHTSTTHHHHHHHHHHHHHHH-H
T ss_pred             CCHHHHH----HHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC-hhH-HHHHhHHHHHHHHHHHHHHHH-H
Confidence            32 2222    22334788898999999999999999999999999987432 211 123334778899999999998 5


Q ss_pred             cCCCCcCHHHHHHHHcC-CchhHHHHHHHhCCeecccCCCcccc
Q 015311          336 YKLHPYPLGHLSKVLMM-EESDVELFCNAYGLQTCIDEVGNKLL  378 (409)
Q Consensus       336 yk~~~~Pl~~L~~~L~f-d~~e~~~fc~~~GL~~~~d~~g~~~l  378 (409)
                      |.  .+|++.++++||+ ++.++.+||+..|-++  |++|.+++
T Consensus       150 Y~--sI~~~~la~lLg~~s~~el~~fi~~~GW~v--d~~g~I~~  189 (226)
T 1rz4_A          150 YQ--HIDRWLLAEMLGDLSDSQLKVWMSKYGWSA--DESGQIFI  189 (226)
T ss_dssp             CS--EECHHHHHHHTTSCCHHHHHHHHHHHTCEE--CC--CEEC
T ss_pred             Hh--hCCHHHHHHHHcCCCHHHHHHHHHHCCCEE--CCCccEEe
Confidence            85  5899999999975 4567999999999987  45676644

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.01  E-value=0.26  Score=49.67  Aligned_cols=110  Identities=13%  Similarity=0.160  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHhhcCCCC-chhhhHHHHHhhCCchhhcCHhHHHHHHHHHHHHhCcHHHHHHHHHh------ccchHHHHH
Q 015311          243 AEFRSFYVLLHLDSNGQ-PVGESLSLWFRHVPSPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA------EASYLQYCI  315 (409)
Q Consensus       243 ~EF~aY~iL~~l~~~~~-~l~~~L~~~l~~l~~~i~~s~~v~~Al~l~~a~~~gNy~rFFrLl~~------~~~~L~~cl  315 (409)
                      ..+.-|.+|..|-.... .+...++   ... .....+|.+.....+..|+..+++..|+.++..      ..+++..+ 
T Consensus       220 ~~~lkYlvL~aLl~~~r~el~~~l~---~~~-~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h-  294 (394)
T 3txn_A          220 LTSLKYMLLCKIMLGQSDDVNQLVS---GKL-AITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAH-  294 (394)
T ss_dssp             HHHHHHHHHHHHHTTCGGGHHHHHH---SHH-HHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhc---ccc-ccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHH-
Confidence            45667777877765442 2222111   010 011268999988999999999999999998753      23444433 


Q ss_pred             HHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchhHHHH
Q 015311          316 IEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELF  360 (409)
Q Consensus       316 l~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e~~~f  360 (409)
                      +......||.++|..+.. .|.  .++++.|++.|+.+..+++..
T Consensus       295 ~~~L~~~Ir~~~L~~i~~-pYs--rIsl~~iA~~l~ls~~evE~~  336 (394)
T 3txn_A          295 LGTLYDTMLEQNLCRIIE-PYS--RVQVAHVAESIQLPMPQVEKK  336 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCS--EEEHHHHHHHHTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhH-hhc--eeeHHHHHHHHCcCHHHHHHH
Confidence            344567899999999987 575  599999999999986555443

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=91.17  E-value=0.64  Score=42.32  Aligned_cols=99  Identities=19%  Similarity=0.242  Sum_probs=62.6

Q ss_pred             HHHHHHHhCcHHHHHHHHHhccchHHHHHHHHhHHHHHHHHHHHHHhhcc---CCCCcCHHHHHHHHcCC------chhH
Q 015311          287 QALRYFQMGNYRRFLSTVAAEASYLQYCIIEPYIDEVRSLALCCIHNCCY---KLHPYPLGHLSKVLMME------ESDV  357 (409)
Q Consensus       287 ~l~~a~~~gNy~rFFrLl~~~~~~L~~cll~~~~~~vR~~AL~~i~~a~y---k~~~~Pl~~L~~~L~fd------~~e~  357 (409)
                      .+..|+..||...|=+.+.+...++..+=+...+.++|..+++.+.+..+   +.+.+|++.++..|.++      .+|+
T Consensus        85 ~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~ev  164 (203)
T 3t5x_A           85 EVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEV  164 (203)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHHHH
Confidence            67889999999999998865434444443334468889988888765322   23579999999999763      2333


Q ss_pred             H---HHHHHhCCe-ecccCCCccccccCCCcc
Q 015311          358 E---LFCNAYGLQ-TCIDEVGNKLLPTKQTTF  385 (409)
Q Consensus       358 ~---~fc~~~GL~-~~~d~~g~~~l~~k~~~f  385 (409)
                      +   .-+-.-|.. -+-+.....++.-|+.+|
T Consensus       165 E~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pF  196 (203)
T 3t5x_A          165 QCILANLIYMGHVKGYISHQHQKLVVSKQNPF  196 (203)
T ss_dssp             HHHHHHHHHHTSSCEEEETTTTEEEECSSCSS
T ss_pred             HHHHHHHHHcCceEEEEcccccEEEECCCCCC
Confidence            3   334555653 222333334444566555

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.23  E-value=4.5  Score=40.26  Aligned_cols=120  Identities=16%  Similarity=0.195  Sum_probs=75.4

Q ss_pred             CHHHHHHHHHHHhh-cCCC-CchhhhHHHHHhhCC--chhhcCHhHHHHHHHHHHHHhCcHHHHHHHHHh---ccchHHH
Q 015311          241 KEAEFRSFYVLLHL-DSNG-QPVGESLSLWFRHVP--SPIIKSKEMWFARQALRYFQMGNYRRFLSTVAA---EASYLQY  313 (409)
Q Consensus       241 ne~EF~aY~iL~~l-~~~~-~~l~~~L~~~l~~l~--~~i~~s~~v~~Al~l~~a~~~gNy~rFFrLl~~---~~~~L~~  313 (409)
                      .+..-.+|.++..+ ..++ ..+++.|.     .|  ..+.++|....-+++..++..|++..|...++.   ..|+|..
T Consensus       208 ~~~~~~a~~l~~~all~~~i~~f~eLL~-----~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~  282 (393)
T 4b4t_O          208 AERQQLAYDLSISALLGDKIYNFGELLH-----HPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQ  282 (393)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSCSTHHHHH-----SCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCChHHHhC-----ChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhh
Confidence            34445677776543 2322 23454332     22  123356666667789999999999999876532   3455543


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCCchhHHHH---HHHhCCe
Q 015311          314 CIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMMEESDVELF---CNAYGLQ  367 (409)
Q Consensus       314 cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd~~e~~~f---c~~~GL~  367 (409)
                      . ......++|..+|..++.+ .....+|.+.|++.|+.+..|++.+   +-.-|+.
T Consensus       283 ~-~~~l~~kirll~l~~l~~~-~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI  337 (393)
T 4b4t_O          283 H-ESFLRQKICLMTLIETVFV-KNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLL  337 (393)
T ss_dssp             H-HHHHHHHHHHHHHHHHHCS-SSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCS
T ss_pred             h-HHHHHHHHHHHHHHHHhcc-CCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCE
Confidence            3 2334578899998888642 2223699999999999986555444   4456764

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.84  E-value=0.96  Score=45.55  Aligned_cols=90  Identities=13%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             CHhHHHHHHHHHHHHhCcHHHHHHHHHh-------ccchHHHHHHHHhHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHc
Q 015311          279 SKEMWFARQALRYFQMGNYRRFLSTVAA-------EASYLQYCIIEPYIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLM  351 (409)
Q Consensus       279 s~~v~~Al~l~~a~~~gNy~rFFrLl~~-------~~~~L~~cll~~~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~  351 (409)
                      .|.+.-...+..++..++|..||..+..       ..+||..+ ...+...||.+++..+.+ .|+  .+.++.|++.||
T Consensus       283 ~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h-~~~l~~~ir~~~l~q~~~-~Ys--~I~l~~mA~~l~  358 (429)
T 4b4t_R          283 TAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRH-ADFFVREMRRKVYAQLLE-SYK--TLSLKSMASAFG  358 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTT-HHHHHHHHHHHHHHHHHH-TCS--EEEHHHHHHHHT
T ss_pred             ChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHH-HHHHHHHHHHHHHHHHhH-Hhc--eeeHHHHHHHhC
Confidence            4667767788899999999999986532       23455554 345678999999999998 686  599999999999


Q ss_pred             CCchh----HHHHHHHhCCeecccC
Q 015311          352 MEESD----VELFCNAYGLQTCIDE  372 (409)
Q Consensus       352 fd~~e----~~~fc~~~GL~~~~d~  372 (409)
                      ++..+    +..+...--|...-|.
T Consensus       359 ~s~~~~E~~L~~lI~~g~l~akID~  383 (429)
T 4b4t_R          359 VSVAFLDNDLGKFIPNKQLNCVIDR  383 (429)
T ss_dssp             SCHHHHHHHHHHHHHHTSSCEEEET
T ss_pred             cCHHHHHHHHHHHHHcCCeEEEEcC
Confidence            99654    4455555555544454

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=87.48  E-value=1.7  Score=44.57  Aligned_cols=117  Identities=9%  Similarity=0.021  Sum_probs=75.3

Q ss_pred             HHHHHHHHhCcHHHHHHHHHhcc-chHHHHHHHHhHHHHHHHHHHHHHhh-------ccCCCCcCHHHHHHHHcC-----
Q 015311          286 RQALRYFQMGNYRRFLSTVAAEA-SYLQYCIIEPYIDEVRSLALCCIHNC-------CYKLHPYPLGHLSKVLMM-----  352 (409)
Q Consensus       286 l~l~~a~~~gNy~rFFrLl~~~~-~~L~~cll~~~~~~vR~~AL~~i~~a-------~yk~~~~Pl~~L~~~L~f-----  352 (409)
                      ..+..|+..||...|=+.+.+.. .++..-++...+.++|..+++.+.+.       .|+...+|++.++..|.+     
T Consensus       300 ~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~  379 (455)
T 3t5v_B          300 SVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPT  379 (455)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCcc
Confidence            46889999999999999886533 34444444667778888777666542       355578999999999985     


Q ss_pred             ----------------CchhHH---HHHHHhCCe-ecccCCCccccccCCCccCCCCCCccccchhhHhhhcc
Q 015311          353 ----------------EESDVE---LFCNAYGLQ-TCIDEVGNKLLPTKQTTFCRPKGGLQNYSFLGFQQLGR  405 (409)
Q Consensus       353 ----------------d~~e~~---~fc~~~GL~-~~~d~~g~~~l~~k~~~f~~p~~~~~~~~~~~~~~~~~  405 (409)
                                      +.+|++   .=+..-|+. -+-+.....++.-|++   ++.+.||+.+-..-.+||.
T Consensus       380 ~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~~---~~~~pFP~l~~~~~~~f~~  449 (455)
T 3t5v_B          380 FEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTT---MIQEIVPPVNERITKMFPA  449 (455)
T ss_dssp             TTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCCS---CGGGTSCCHHHHHHHHSCC
T ss_pred             ccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCCC---CCCCCCCChHHHHHHHcCC
Confidence                            223333   334555664 2224443444444553   2456788777766677764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d1rz4a1	85	Eukaryotic translation initiation factor 3 subunit	91.26

>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.26  E-value=0.26  Score=37.20  Aligned_cols=73  Identities=21%  Similarity=0.321  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHcCC-chhHHHHHHHhCCeecccCCCccccccCCCccCCCCCCccccch
Q 015311          319 YIDEVRSLALCCIHNCCYKLHPYPLGHLSKVLMME-ESDVELFCNAYGLQTCIDEVGNKLLPTKQTTFCRPKGGLQNYSF  397 (409)
Q Consensus       319 ~~~~vR~~AL~~i~~a~yk~~~~Pl~~L~~~L~fd-~~e~~~fc~~~GL~~~~d~~g~~~l~~k~~~f~~p~~~~~~~~~  397 (409)
                      |-..||..+...+.. .|.  .+|...|+++||.. +.++..|++.||-.+.  ++|.+++ .++-...-|+...-...|
T Consensus         3 FedsIR~~i~~vv~i-Tyq--~I~~~~L~e~LG~~~d~~L~~~i~~~gW~~~--~~g~v~v-~nqe~~iK~kni~EkI~f   76 (85)
T d1rz4a1           3 FEDSVRKFICHVVGI-TYQ--HIDRWLLAEMLGDLSDSQLKVWMSKYGWSAD--ESGQIFI-CSQEESIKPKNIVEKIDF   76 (85)
T ss_dssp             HHHHHHHHHHHHHHH-HCS--EECHHHHHHHTTSCCHHHHHHHHHHHTCEEC--C--CEEC-CCHHHHTSCCCSSCCCCH
T ss_pred             HHHHHHHHHHhheee-eee--EEcHHHHHHHhCCCCHHHHHHHHHHcCCEEc--CCCEEEe-cChhhhcCccceeeeccH
Confidence            556799999999987 575  69999999999975 4579999999999874  3465544 566666666544434333