Citrus Sinensis ID: 015314

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS
ccccccccHHHHHHHHHHcccHHHHHHHHcccccHHHHHcccHHHHHHcccEEEccccccccccccHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHccccccccccccccEEEcccccccccEEEEEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHcccccccEEEEEcccEEEEEcccccHHHHHHccccccccccccccEEEEEEccEEEEEEcccccccccEEEEEcccHHHHHHHHHHHcccccEEEcccccHHHHHHHccccccccccccccccccccccEEEEcccccccccccHHHHHHHHHccccEEEEEEEEcccccccccEEEcccccEEEEEccccccccccccEEEEEEcccccccccEEEEEEccccccEEEEccccccccccccc
cccccccccccEEEEccccccccHHcccccccccHHHccccHHHHHHHHccEEEEcccccccccccccHHHHHHHHHHHcccEEEccccEEEEEcccHHHHHHHHcHcHHHHcccccEEEEEEEcccccEEccEEEEEEcccEEEEEEEcccHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHccHHHHHHHHHHcHccHHHcccEEEEEEEEccEEEEEEEccccccccEEEEEcHHHHHHHHHHHHHccccccEEcccccHHHHHHHccccccccccccccccHHcccEEEEEcccccccccccHHHHHHHHHcccccEEEEEEEccccccccccEEcccccEEEEEEcccccccccccEEEEEEcHHHHccccEEEEEEEccEEEEEEEccccccccccccc
mrggslwqLGQSITRRLARADKKTIARRHFASDAENLKKTAlhdfhvanggkmvpfagwsmpiqyKDSIMEStlncrqngslfdvshmcglslkgkdcvpfLEKLVIAdvaglapgtgtltvftnenggsiddsvitkvkddHIYLVVNAGCRDKDLAHIEAHMKSFtakggdvswhiHDERSLlalqgplaapvlqhltkddlsklyfgefrildingvscfltrtgytgedgfeisvpSERAVDLAKAILEKSegkvrltglgardSLRLEAGLclygndmeqhvtpveAGLTWAIGKrrraeggflGAEKILKQldegppvrrvgffaggpparshskvhdeqgnpigeitsggfspclkKNIAMGyvksglhkagtkvKIEVrgkaydgnitkmpfvptkyykps
mrggslwqlgQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTvftnenggsiddsvitkvKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAIleksegkvrltglgardsLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILkqldegppvRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKsglhkagtkvkievrgkaydgnitkmpfvptkyykps
MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS
************************IARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFF**********************ITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKY****
***************************************TALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY***
MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGP**********EQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS
****SLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYY***
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SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query409 2.2.26 [Sep-21-2011]
O65396408 Aminomethyltransferase, m yes no 0.997 1.0 0.863 0.0
P54260406 Aminomethyltransferase, m N/A no 0.992 1.0 0.862 0.0
O23936407 Aminomethyltransferase, m N/A no 0.995 1.0 0.850 0.0
P49363407 Aminomethyltransferase, m N/A no 0.995 1.0 0.848 0.0
O49849407 Aminomethyltransferase, m N/A no 0.995 1.0 0.841 0.0
P93256408 Aminomethyltransferase, m N/A no 0.992 0.995 0.835 0.0
P49364408 Aminomethyltransferase, m N/A no 0.995 0.997 0.848 0.0
P48728403 Aminomethyltransferase, m yes no 0.919 0.933 0.521 1e-105
Q8CFA2403 Aminomethyltransferase, m yes no 0.926 0.940 0.509 1e-104
P28337392 Aminomethyltransferase, m yes no 0.933 0.974 0.510 1e-104
>sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1 Back     alignment and function desciption
 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/409 (86%), Positives = 386/409 (94%), Gaps = 1/409 (0%)

Query: 1   MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWS 60
           MRGGSLWQLGQSITRRLA++DKK ++RR+FAS+A +LKKTAL+DFHVA+GGKMVPFAGWS
Sbjct: 1   MRGGSLWQLGQSITRRLAQSDKKVVSRRYFASEA-DLKKTALYDFHVAHGGKMVPFAGWS 59

Query: 61  MPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTL 120
           MPIQYKDSIM+ST+NCR+NGSLFDV+HMCGLSLKGKDCVPFLE LV+ADVAGLAPGTG+L
Sbjct: 60  MPIQYKDSIMDSTVNCRENGSLFDVAHMCGLSLKGKDCVPFLETLVVADVAGLAPGTGSL 119

Query: 121 TVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHD 180
           TVFTNE GG+IDDSVITKV D+HIYLVVNAGCRDKDLAHIE HMK+F +KGGDVSWHIHD
Sbjct: 120 TVFTNEKGGAIDDSVITKVTDEHIYLVVNAGCRDKDLAHIEEHMKAFKSKGGDVSWHIHD 179

Query: 181 ERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVP 240
           ERSLLALQGPLAAPVLQHLTK+DLSKLYFG F+ILDING +CFLTRTGYTGEDGFEISVP
Sbjct: 180 ERSLLALQGPLAAPVLQHLTKEDLSKLYFGNFQILDINGSTCFLTRTGYTGEDGFEISVP 239

Query: 241 SERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGK 300
            E AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQH++PVEAGLTWAIGK
Sbjct: 240 DEHAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHISPVEAGLTWAIGK 299

Query: 301 RRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSP 360
           RRRAEGGFLGA+ IL+QL +GP +RRVGFF+ GPPARSHS+VHDE GN IGEITSGGFSP
Sbjct: 300 RRRAEGGFLGADVILQQLKDGPTIRRVGFFSSGPPARSHSEVHDESGNKIGEITSGGFSP 359

Query: 361 CLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 409
            LKKNIAMGYVKSG HK GTKVKI VRGK Y+G+ITKMPFV TKYYKP+
Sbjct: 360 NLKKNIAMGYVKSGQHKTGTKVKILVRGKPYEGSITKMPFVATKYYKPT 408
The glycine cleavage system catalyzes the degradation of glycine.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1EC: 0
>sp|P54260|GCST_SOLTU Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1 Back     alignment and function description
>sp|O23936|GCST_FLATR Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1 Back     alignment and function description
>sp|P49363|GCST_FLAPR Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1 Back     alignment and function description
>sp|O49849|GCST_FLAAN Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1 Back     alignment and function description
>sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1 Back     alignment and function description
>sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2 Back     alignment and function description
>sp|P48728|GCST_HUMAN Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1 Back     alignment and function description
>sp|Q8CFA2|GCST_MOUSE Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1 Back     alignment and function description
>sp|P28337|GCST_CHICK Aminomethyltransferase, mitochondrial OS=Gallus gallus GN=AMT PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
225444472408 PREDICTED: aminomethyltransferase, mitoc 0.997 1.0 0.887 0.0
356531975407 PREDICTED: LOW QUALITY PROTEIN: aminomet 0.995 1.0 0.870 0.0
297844036408 hypothetical protein ARALYDRAFT_471331 [ 0.997 1.0 0.867 0.0
255640227407 unknown [Glycine max] 0.995 1.0 0.870 0.0
224113699408 precursor of carboxylase t-protein 1, gl 0.997 1.0 0.875 0.0
15221119408 aminomethyltransferase [Arabidopsis thal 0.997 1.0 0.863 0.0
307136227407 aminomethyltransferase [Cucumis melo sub 0.995 1.0 0.870 0.0
388510246407 unknown [Lotus japonicus] 0.995 1.0 0.872 0.0
449454756407 PREDICTED: aminomethyltransferase, mitoc 0.995 1.0 0.867 0.0
356522011407 PREDICTED: aminomethyltransferase, mitoc 0.990 0.995 0.876 0.0
>gi|225444472|ref|XP_002272701.1| PREDICTED: aminomethyltransferase, mitochondrial [Vitis vinifera] Back     alignment and taxonomy information
 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/409 (88%), Positives = 389/409 (95%), Gaps = 1/409 (0%)

Query: 1   MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWS 60
           MRGG LWQLGQSITRRLA+ADKK +ARR FAS+AE LKKT L+DFH+ANGGKMVPFAGWS
Sbjct: 1   MRGGGLWQLGQSITRRLAQADKKAVARRCFASEAE-LKKTVLYDFHIANGGKMVPFAGWS 59

Query: 61  MPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTL 120
           MPIQYKDSIM+ST+NCR+NGSLFDVSHMCGLSLKGKDC+PFLEKLVIADVAGLAPGTGTL
Sbjct: 60  MPIQYKDSIMDSTVNCRENGSLFDVSHMCGLSLKGKDCIPFLEKLVIADVAGLAPGTGTL 119

Query: 121 TVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHD 180
           TVFTNE GG+IDDSVITKVKD+HIYLVVNAGCRDKDLAHIE HMK++ +KGGDVSWHIHD
Sbjct: 120 TVFTNEKGGAIDDSVITKVKDNHIYLVVNAGCRDKDLAHIEEHMKAYKSKGGDVSWHIHD 179

Query: 181 ERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVP 240
           ERSLLALQGPLAAPVLQHLTK+DLSKL+FGEF+ILDING +CFLTRTGYTGEDGFEISVP
Sbjct: 180 ERSLLALQGPLAAPVLQHLTKEDLSKLFFGEFQILDINGATCFLTRTGYTGEDGFEISVP 239

Query: 241 SERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGK 300
           SE AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGK
Sbjct: 240 SENAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGK 299

Query: 301 RRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSP 360
           RRRAEGGFLGAE ILKQL+EGP VRRVGFF+ GPPARSHS++ D++GN IGEITSGGFSP
Sbjct: 300 RRRAEGGFLGAEVILKQLEEGPSVRRVGFFSSGPPARSHSEIQDDKGNNIGEITSGGFSP 359

Query: 361 CLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 409
           CLKKNI MGYVKSG HKAGTKVKI +RGK YDG +TKMPFVPTKYYKPS
Sbjct: 360 CLKKNIGMGYVKSGSHKAGTKVKILIRGKPYDGVVTKMPFVPTKYYKPS 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356531975|ref|XP_003534551.1| PREDICTED: LOW QUALITY PROTEIN: aminomethyltransferase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|297844036|ref|XP_002889899.1| hypothetical protein ARALYDRAFT_471331 [Arabidopsis lyrata subsp. lyrata] gi|297335741|gb|EFH66158.1| hypothetical protein ARALYDRAFT_471331 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255640227|gb|ACU20404.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224113699|ref|XP_002316546.1| precursor of carboxylase t-protein 1, glycine decarboxylase complex [Populus trichocarpa] gi|222859611|gb|EEE97158.1| precursor of carboxylase t-protein 1, glycine decarboxylase complex [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15221119|ref|NP_172650.1| aminomethyltransferase [Arabidopsis thaliana] gi|30682471|ref|NP_849646.1| aminomethyltransferase [Arabidopsis thaliana] gi|334182489|ref|NP_001184969.1| aminomethyltransferase [Arabidopsis thaliana] gi|18206365|sp|O65396.1|GCST_ARATH RecName: Full=Aminomethyltransferase, mitochondrial; AltName: Full=Glycine cleavage system T protein; Short=GCVT; Flags: Precursor gi|3157944|gb|AAC17627.1| Very strong similarity to aminomethyltransferase precursor gb|U79769 from Mesembryanthemum crystallinum. ESTs gb|T43167, gb|T21076, gb|H36999, gb|T22773, gb|N38038, gb|T13742, gb|Z26545, gb|T20753 and gb|W43123 come from this gene [Arabidopsis thaliana] gi|21928147|gb|AAM78101.1| At1g11860/F12F1_30 [Arabidopsis thaliana] gi|30102502|gb|AAP21169.1| At1g11860/F12F1_30 [Arabidopsis thaliana] gi|332190681|gb|AEE28802.1| aminomethyltransferase [Arabidopsis thaliana] gi|332190682|gb|AEE28803.1| aminomethyltransferase [Arabidopsis thaliana] gi|332190683|gb|AEE28804.1| aminomethyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|307136227|gb|ADN34064.1| aminomethyltransferase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|388510246|gb|AFK43189.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449454756|ref|XP_004145120.1| PREDICTED: aminomethyltransferase, mitochondrial-like [Cucumis sativus] gi|449472329|ref|XP_004153559.1| PREDICTED: aminomethyltransferase, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356522011|ref|XP_003529643.1| PREDICTED: aminomethyltransferase, mitochondrial-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query409
TAIR|locus:2008900408 AT1G11860 [Arabidopsis thalian 0.997 1.0 0.863 2.7e-194
UNIPROTKB|P49364408 GDCST "Aminomethyltransferase, 0.995 0.997 0.848 3.3e-189
ZFIN|ZDB-GENE-041010-114409 amt "aminomethyltransferase" [ 0.911 0.911 0.535 1.4e-101
UNIPROTKB|I3LIR4403 AMT "Aminomethyltransferase" [ 0.897 0.910 0.530 2.2e-98
RGD|1359408403 Amt "aminomethyltransferase" [ 0.926 0.940 0.519 3.5e-98
UNIPROTKB|P25285397 AMT "Aminomethyltransferase, m 0.897 0.924 0.525 1.4e-96
UNIPROTKB|P48728403 AMT "Aminomethyltransferase, m 0.902 0.915 0.528 3.7e-96
MGI|MGI:3646700403 Amt "aminomethyltransferase" [ 0.926 0.940 0.509 9.7e-96
UNIPROTKB|Q9TSZ7403 AMT "Aminomethyltransferase, m 0.897 0.910 0.525 2e-95
UNIPROTKB|P28337392 AMT "Aminomethyltransferase, m 0.933 0.974 0.510 2.6e-95
TAIR|locus:2008900 AT1G11860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1882 (667.6 bits), Expect = 2.7e-194, P = 2.7e-194
 Identities = 353/409 (86%), Positives = 386/409 (94%)

Query:     1 MRGGSLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWS 60
             MRGGSLWQLGQSITRRLA++DKK ++RR+FAS+A+ LKKTAL+DFHVA+GGKMVPFAGWS
Sbjct:     1 MRGGSLWQLGQSITRRLAQSDKKVVSRRYFASEAD-LKKTALYDFHVAHGGKMVPFAGWS 59

Query:    61 MPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTL 120
             MPIQYKDSIM+ST+NCR+NGSLFDV+HMCGLSLKGKDCVPFLE LV+ADVAGLAPGTG+L
Sbjct:    60 MPIQYKDSIMDSTVNCRENGSLFDVAHMCGLSLKGKDCVPFLETLVVADVAGLAPGTGSL 119

Query:   121 TVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHD 180
             TVFTNE GG+IDDSVITKV D+HIYLVVNAGCRDKDLAHIE HMK+F +KGGDVSWHIHD
Sbjct:   120 TVFTNEKGGAIDDSVITKVTDEHIYLVVNAGCRDKDLAHIEEHMKAFKSKGGDVSWHIHD 179

Query:   181 ERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVP 240
             ERSLLALQGPLAAPVLQHLTK+DLSKLYFG F+ILDING +CFLTRTGYTGEDGFEISVP
Sbjct:   180 ERSLLALQGPLAAPVLQHLTKEDLSKLYFGNFQILDINGSTCFLTRTGYTGEDGFEISVP 239

Query:   241 SERAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGK 300
              E AVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQH++PVEAGLTWAIGK
Sbjct:   240 DEHAVDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHISPVEAGLTWAIGK 299

Query:   301 RRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSP 360
             RRRAEGGFLGA+ IL+QL +GP +RRVGFF+ GPPARSHS+VHDE GN IGEITSGGFSP
Sbjct:   300 RRRAEGGFLGADVILQQLKDGPTIRRVGFFSSGPPARSHSEVHDESGNKIGEITSGGFSP 359

Query:   361 CLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 409
              LKKNIAMGYVKSG HK GTKVKI VRGK Y+G+ITKMPFV TKYYKP+
Sbjct:   360 NLKKNIAMGYVKSGQHKTGTKVKILVRGKPYEGSITKMPFVATKYYKPT 408
GO:0004047 "aminomethyltransferase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006546 "glycine catabolic process" evidence=IEA;RCA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0016020 "membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0007389 "pattern specification process" evidence=RCA
GO:0008361 "regulation of cell size" evidence=RCA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0009926 "auxin polar transport" evidence=RCA
GO:0010015 "root morphogenesis" evidence=RCA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0040007 "growth" evidence=RCA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
UNIPROTKB|P49364 GDCST "Aminomethyltransferase, mitochondrial" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-114 amt "aminomethyltransferase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LIR4 AMT "Aminomethyltransferase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1359408 Amt "aminomethyltransferase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P25285 AMT "Aminomethyltransferase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P48728 AMT "Aminomethyltransferase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:3646700 Amt "aminomethyltransferase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TSZ7 AMT "Aminomethyltransferase, mitochondrial" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P28337 AMT "Aminomethyltransferase, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A5IKL0GCST_THEP12, ., 1, ., 2, ., 1, 00.38580.85810.9642yesno
A4J2F6GCST_DESRM2, ., 1, ., 2, ., 1, 00.37390.86790.9752yesno
C3L1M5GCST_CLOB62, ., 1, ., 2, ., 1, 00.40.84350.9324yesno
O49849GCST_FLAAN2, ., 1, ., 2, ., 1, 00.84100.99511.0N/Ano
Q54DD3GCST_DICDI2, ., 1, ., 2, ., 1, 00.48520.95840.9727yesno
O23936GCST_FLATR2, ., 1, ., 2, ., 1, 00.85080.99511.0N/Ano
Q9K934GCST_BACHD2, ., 1, ., 2, ., 1, 00.38100.85810.9616yesno
A0RIL1GCST_BACAH2, ., 1, ., 2, ., 1, 00.37730.87530.9781yesno
Q8CFA2GCST_MOUSE2, ., 1, ., 2, ., 1, 00.50910.92660.9404yesno
P25285GCST_BOVIN2, ., 1, ., 2, ., 1, 00.51570.91930.9471yesno
O65396GCST_ARATH2, ., 1, ., 2, ., 1, 00.86300.99751.0yesno
Q6HDT6GCST_BACHK2, ., 1, ., 2, ., 1, 00.37730.87530.9781yesno
P49363GCST_FLAPR2, ., 1, ., 2, ., 1, 00.84840.99511.0N/Ano
P49364GCST_PEA2, ., 1, ., 2, ., 1, 00.84870.99510.9975N/Ano
Q81M06GCST_BACAN2, ., 1, ., 2, ., 1, 00.37730.87530.9781yesno
Q9WY54GCST_THEMA2, ., 1, ., 2, ., 1, 00.38580.85810.9642yesno
P48015GCST_YEAST2, ., 1, ., 2, ., 1, 00.44550.91930.94yesno
C3LKQ4GCST_BACAC2, ., 1, ., 2, ., 1, 00.37730.87530.9781yesno
P93256GCST_MESCR2, ., 1, ., 2, ., 1, 00.83530.99260.9950N/Ano
C5D4A2GCST_GEOSW2, ., 1, ., 2, ., 1, 00.41030.86550.9725yesno
C3P8D5GCST_BACAA2, ., 1, ., 2, ., 1, 00.37730.87530.9781yesno
Q5SKX0GCST_THET82, ., 1, ., 2, ., 1, 00.38750.85080.9971yesno
Q3AVT0GCST_SYNS92, ., 1, ., 2, ., 1, 00.38250.87530.9808yesno
B0K242GCST_THEPX2, ., 1, ., 2, ., 1, 00.39160.84100.9347yesno
B0KD95GCST_THEP32, ., 1, ., 2, ., 1, 00.39830.84350.9375yesno
Q9TSZ7GCST_CANFA2, ., 1, ., 2, ., 1, 00.51570.91930.9330yesno
A4IQV5GCST_GEOTN2, ., 1, ., 2, ., 1, 00.39830.87280.9780yesno
P28337GCST_CHICK2, ., 1, ., 2, ., 1, 00.51030.93390.9744yesno
Q818M3GCST_BACCR2, ., 1, ., 2, ., 1, 00.37730.87530.9781yesno
P54260GCST_SOLTU2, ., 1, ., 2, ., 1, 00.86270.99261.0N/Ano
B8FT33GCST_DESHD2, ., 1, ., 2, ., 1, 00.39310.86300.9671yesno
C1ERV0GCST_BACC32, ., 1, ., 2, ., 1, 00.37730.87530.9781yesno
B1L9U1GCST_THESQ2, ., 1, ., 2, ., 1, 00.38040.85810.9642yesno
A7Z6M4GCST_BACA22, ., 1, ., 2, ., 1, 00.39830.86300.9644yesno
Q3AET7GCST_CARHZ2, ., 1, ., 2, ., 1, 00.39720.85570.9722yesno
A6LP67GCST_THEM42, ., 1, ., 2, ., 1, 00.41080.84590.9531yesno
A2CDX3GCST_PROM32, ., 1, ., 2, ., 1, 00.37400.88010.9625yesno
B7IXL4GCST_BACC22, ., 1, ., 2, ., 1, 00.37730.87530.9781yesno
Q5KX76GCST_GEOKA2, ., 1, ., 2, ., 1, 00.39500.86790.9752yesno
B1XP99GCST_SYNP22, ., 1, ., 2, ., 1, 00.38520.86790.9779yesno
Q24TH3GCST_DESHY2, ., 1, ., 2, ., 1, 00.39310.86300.9671yesno
P48728GCST_HUMAN2, ., 1, ., 2, ., 1, 00.52100.91930.9330yesno
Q7TUI6GCST_PROMM2, ., 1, ., 2, ., 1, 00.37920.88010.9625yesno
A6TMY6GCST_ALKMQ2, ., 1, ., 2, ., 1, 00.39250.88990.9864yesno
O14110GCST_SCHPO2, ., 1, ., 2, ., 1, 00.45680.93880.9922yesno
Q634V6GCST_BACCZ2, ., 1, ., 2, ., 1, 00.37730.87530.9781yesno
B7GH71GCST_ANOFW2, ., 1, ., 2, ., 1, 00.41300.86550.9725yesno
Q8RCV9GCST_THETN2, ., 1, ., 2, ., 1, 00.40110.84350.9224yesno
B7JMV1GCST_BACC02, ., 1, ., 2, ., 1, 00.37730.87530.9781yesno
B9IXL9GCST_BACCQ2, ., 1, ., 2, ., 1, 00.37990.87530.9781yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.20.998
4th Layer2.1.2.100.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
PLN02319404 PLN02319, PLN02319, aminomethyltransferase 0.0
PRK13579370 PRK13579, gcvT, glycine cleavage system aminomethy 1e-158
PRK00389359 PRK00389, gcvT, glycine cleavage system aminomethy 1e-138
COG0404379 COG0404, GcvT, Glycine cleavage system T protein ( 1e-131
TIGR00528362 TIGR00528, gcvT, glycine cleavage system T protein 1e-113
pfam01571212 pfam01571, GCV_T, Aminomethyltransferase folate-bi 5e-76
TIGR01372985 TIGR01372, soxA, sarcosine oxidase, alpha subunit 5e-34
PRK12486368 PRK12486, dmdA, putative dimethyl sulfoniopropiona 5e-30
pfam0866995 pfam08669, GCV_T_C, Glycine cleavage T-protein C-t 1e-28
pfam10396114 pfam10396, TrmE_N, GTP-binding protein TrmE N-term 0.004
>gnl|CDD|177953 PLN02319, PLN02319, aminomethyltransferase Back     alignment and domain information 
 Score =  813 bits (2101), Expect = 0.0
 Identities = 339/404 (83%), Positives = 369/404 (91%), Gaps = 1/404 (0%)

Query: 6   LWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQY 65
           LWQLGQS+TRR A+ADKK ++RR+FAS+A NLKKTAL+DFHVANGGKMVPFAGWSMPIQY
Sbjct: 2   LWQLGQSLTRRAAQADKKALSRRYFASEA-NLKKTALYDFHVANGGKMVPFAGWSMPIQY 60

Query: 66  KDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTN 125
           KDSIM+STLNCRQNGSLFDVSHMCGLSLKGKD +PFLE LV+AD+AGL  GTGTL+VFTN
Sbjct: 61  KDSIMDSTLNCRQNGSLFDVSHMCGLSLKGKDAIPFLETLVVADIAGLKDGTGTLSVFTN 120

Query: 126 ENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 185
           E GG IDD+VITKV DDHIYLVVNAGCRDKDLAHIE HMK+F AKGGDVSWH+HDERSLL
Sbjct: 121 EKGGIIDDTVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHVHDERSLL 180

Query: 186 ALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAV 245
           ALQGPLAAPVLQHLTK+DLSK+YFG+FRI DING  CFLTRTGYTGEDGFEISVPSE AV
Sbjct: 181 ALQGPLAAPVLQHLTKEDLSKMYFGDFRITDINGADCFLTRTGYTGEDGFEISVPSEHAV 240

Query: 246 DLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAE 305
           DLAKA+LEKSEGKVRLTGLGARDSLRLEAGLCLYGND+E+H+TPVEAGL W IGKRRRAE
Sbjct: 241 DLAKALLEKSEGKVRLTGLGARDSLRLEAGLCLYGNDLEEHITPVEAGLAWTIGKRRRAE 300

Query: 306 GGFLGAEKILKQLDEGPPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKN 365
           GGFLGA+ ILKQL EG   RRVGF + G PARSHS++ DE G  IGE+TSGGFSPCLKKN
Sbjct: 301 GGFLGADVILKQLKEGVSRRRVGFISSGAPARSHSEILDESGEKIGEVTSGGFSPCLKKN 360

Query: 366 IAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKPS 409
           IAMGYVKSG HKAGT+VK+EVRGK YD  +TKMPFVPTKYYKP 
Sbjct: 361 IAMGYVKSGFHKAGTEVKVEVRGKMYDAVVTKMPFVPTKYYKPP 404

Length = 404
>gnl|CDD|237435 PRK13579, gcvT, glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>gnl|CDD|234742 PRK00389, gcvT, glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233010 TIGR00528, gcvT, glycine cleavage system T protein Back     alignment and domain information
>gnl|CDD|216578 pfam01571, GCV_T, Aminomethyltransferase folate-binding domain Back     alignment and domain information
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>gnl|CDD|237113 PRK12486, dmdA, putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>gnl|CDD|219963 pfam08669, GCV_T_C, Glycine cleavage T-protein C-terminal barrel domain Back     alignment and domain information
>gnl|CDD|204472 pfam10396, TrmE_N, GTP-binding protein TrmE N-terminus Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 409
PLN02319404 aminomethyltransferase 100.0
COG0404379 GcvT Glycine cleavage system T protein (aminomethy 100.0
PRK13579370 gcvT glycine cleavage system aminomethyltransferas 100.0
PRK12486368 dmdA putative dimethyl sulfoniopropionate demethyl 100.0
KOG2770401 consensus Aminomethyl transferase [Amino acid tran 100.0
PRK00389359 gcvT glycine cleavage system aminomethyltransferas 100.0
TIGR00528361 gcvT glycine cleavage system T protein. Eukaryotic 100.0
TIGR01372985 soxA sarcosine oxidase, alpha subunit family, hete 100.0
KOG2844856 consensus Dimethylglycine dehydrogenase precursor 100.0
PRK09559327 putative global regulator; Reviewed 100.0
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 100.0
COG0354305 Predicted aminomethyltransferase related to GcvT [ 100.0
KOG2929348 consensus Transcription factor, component of CCR4 99.96
PF0866995 GCV_T_C: Glycine cleavage T-protein C-terminal bar 99.85
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 99.8
TIGR0331767 ygfZ_signature folate-binding protein YgfZ. YgfZ i 99.78
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 99.24
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 99.05
PF04268147 SoxG: Sarcosine oxidase, gamma subunit family ; In 97.72
TIGR01375152 soxG sarcosine oxidase, gamma subunit family, hete 97.55
COG4583189 Sarcosine oxidase gamma subunit [Amino acid transp 97.17
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 96.15
PF10396114 TrmE_N: GTP-binding protein TrmE N-terminus; Inter 93.96
PF0817092 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 93.75
COG0486 454 ThdF Predicted GTPase [General function prediction 93.68
PF01571211 GCV_T: Aminomethyltransferase folate-binding domai 90.45
PRK00389359 gcvT glycine cleavage system aminomethyltransferas 87.98
TIGR00528361 gcvT glycine cleavage system T protein. Eukaryotic 87.33
PLN02319404 aminomethyltransferase 87.3
COG0404379 GcvT Glycine cleavage system T protein (aminomethy 84.48
TIGR00450 442 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE 84.45
PRK13579370 gcvT glycine cleavage system aminomethyltransferas 81.36
>PLN02319 aminomethyltransferase Back     alignment and domain information 
Probab=100.00  E-value=4.3e-95  Score=733.08  Aligned_cols=401  Identities=83%  Similarity=1.334  Sum_probs=375.9

Q ss_pred             chhhhhhHHHHhhhhhcchhhhhhhccCCCcccccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEe
Q 015314            5 SLWQLGQSITRRLARADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFD   84 (409)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~D   84 (409)
                      .|||||||+|||-|.||||+..||+|+|. |++|+||||+.|+++||+|++++||+||.||++++.+||+|+|++|+|||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~r~tpl~~~~~~~Ga~~~~~~Gwe~p~~y~~~~~~E~~a~R~~~gl~D   79 (404)
T PLN02319          1 ALWQLGQSLTRRAAQADKKALSRRYFASE-ANLKKTALYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFD   79 (404)
T ss_pred             ChHHHHHHHHhhhhhccccchhcccccCC-CCcccCCcHHHHHHCCCEEEEECCEehhhhcCccHHHHHHHHHhCeEEEE
Confidence            38999999999999999999999999976 89999999999999999999999999999997458899999999999999


Q ss_pred             CCCceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHH
Q 015314           85 VSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHM  164 (409)
Q Consensus        85 lS~~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~  164 (409)
                      +|++++|+|+|+||.+|||+++||||+.+++|+++||++||++|+|++|++|+|+++|+|||+++++..+.+++||++++
T Consensus        80 lS~~~~i~V~G~Da~~fLq~l~t~dv~~l~~G~~~yt~~ln~~G~ii~D~~v~r~~~d~~~l~~~~~~~~~~~~~l~~~~  159 (404)
T PLN02319         80 VSHMCGLSLKGKDAIPFLETLVVADIAGLKDGTGTLSVFTNEKGGIIDDTVITKVTDDHIYLVVNAGCRDKDLAHIEEHM  159 (404)
T ss_pred             CCCcEEEEEECCCHHHHHhhhcccccCCCCCCCEEEeEEECCCCeEEEEEEEEEEcCCEEEEEECCccHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999998999999999999999999999998


Q ss_pred             hhccCCCCCeEEEEeCCeEEEEEeCCChHHHHhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccH
Q 015314          165 KSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERA  244 (409)
Q Consensus       165 ~~~~~~~~~V~i~~~~~~~~l~l~GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a  244 (409)
                      ..++..+.+|++++++++++|+||||+|+++|+++.+.+++++||+.++.+.+++.+++++|++|+||+||||++|.+.+
T Consensus       160 ~~~~~~~~~v~~~~~~~~~~l~lqGP~s~~~l~~l~~~~l~~~~f~~~~~~~i~g~~v~i~R~g~tGE~G~El~~p~~~a  239 (404)
T PLN02319        160 KAFKAKGGDVSWHVHDERSLLALQGPLAAPVLQHLTKEDLSKMYFGDFRITDINGADCFLTRTGYTGEDGFEISVPSEHA  239 (404)
T ss_pred             hhccCCCCcEEEEEcCCeEEEEEECccHHHHHHHhcccchhhCCCceEEEEEECCeeEEEEEeeecCCCeEEEEEcHHHH
Confidence            65421234788877788999999999999999999887888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCceEecccchhhhhhhcccccccCCCCCCCCccccccccccc---cccCcCCCCcCHHHHHhhHhcC
Q 015314          245 VDLAKAILEKSEGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIG---KRRRAEGGFLGAEKILKQLDEG  321 (409)
Q Consensus       245 ~~l~~~L~~ag~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~---f~K~~~GcyiGqE~lar~~~~g  321 (409)
                      .+||+.|+++|.+++.++|+.+|+++|||+|+|.+|+|++++++|+|+||+|+|+   |+|   |||+|||+++|++++|
T Consensus       240 ~~l~~~L~~aG~~g~~~~G~~a~d~lRiEaG~p~~g~dl~~~~~P~EagL~~~v~~~~~~K---g~fiGqEalar~~~~g  316 (404)
T PLN02319        240 VDLAKALLEKSEGKVRLTGLGARDSLRLEAGLCLYGNDLEEHITPVEAGLAWTIGKRRRAE---GGFLGADVILKQLKEG  316 (404)
T ss_pred             HHHHHHHHhCcccCcEecchhHhhHHHhhcCccccCCcCCCCCCHHHCCccceecccccCC---CCCcCHHHHHHHHhcC
Confidence            9999999998645689999999999999999999999999999999999999987   455   9999999999999999


Q ss_pred             CCeEEEEEEeCCCCCCCCCeEecCCCcEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCc
Q 015314          322 PPVRRVGFFAGGPPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFV  401 (409)
Q Consensus       322 ~~rrlv~l~~~~~~~~~g~~v~~~~g~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~  401 (409)
                      ++||++++..++.++.+|++|++.+|+.||.|||++|||+++++||||||+.+++.+|+.++|++.|+.++|+|+.+||+
T Consensus       317 ~~rrlvgl~~~~~~~~~g~~v~~~~g~~VG~VTS~~~Sp~l~~~Iala~v~~~~~~~g~~v~v~~~g~~~~a~v~~~Pf~  396 (404)
T PLN02319        317 VSRRRVGFISSGAPARSHSEILDESGEKIGEVTSGGFSPCLKKNIAMGYVKSGFHKAGTEVKVEVRGKMYDAVVTKMPFV  396 (404)
T ss_pred             CCeEEEEEEECCccCCCCCEEEeCCCCEEEEEeeecccccCCceEEEEEEChhhcCCCCEEEEEECCeEEEEEEECCCCc
Confidence            99999999765556678999985579999999999999999999999999999888999999999999999999999999


Q ss_pred             CCCCCCCC
Q 015314          402 PTKYYKPS  409 (409)
Q Consensus       402 ~~~~~~~~  409 (409)
                      ++.|||+|
T Consensus       397 ~~~~~~~~  404 (404)
T PLN02319        397 PTKYYKPP  404 (404)
T ss_pred             CcccCCCC
Confidence            99999987

>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed Back     alignment and domain information
>KOG2770 consensus Aminomethyl transferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form Back     alignment and domain information
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09559 putative global regulator; Reviewed Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>COG0354 Predicted aminomethyltransferase related to GcvT [General function prediction only] Back     alignment and domain information
>KOG2929 consensus Transcription factor, component of CCR4 transcriptional complex [Transcription] Back     alignment and domain information
>PF08669 GCV_T_C: Glycine cleavage T-protein C-terminal barrel domain; InterPro: IPR013977 This entry shows glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>TIGR03317 ygfZ_signature folate-binding protein YgfZ Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF04268 SoxG: Sarcosine oxidase, gamma subunit family ; InterPro: IPR007375 Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD+ Back     alignment and domain information
>TIGR01375 soxG sarcosine oxidase, gamma subunit family, heterotetrameric form Back     alignment and domain information
>COG4583 Sarcosine oxidase gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP Back     alignment and domain information
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [] Back     alignment and domain information
>COG0486 ThdF Predicted GTPase [General function prediction only] Back     alignment and domain information
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed Back     alignment and domain information
>TIGR00528 gcvT glycine cleavage system T protein Back     alignment and domain information
>PLN02319 aminomethyltransferase Back     alignment and domain information
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE Back     alignment and domain information
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
1wsr_A375 Crystal Structure Of Human T-Protein Of Glycine Cle 1e-106
3gir_A393 Crystal Structure Of Glycine Cleavage System Aminom 5e-66
1woo_A364 Crystal Structure Of T-Protein Of The Glycine Cleav 9e-61
1yx2_A365 Crystal Structure Of The Probable Aminomethyltransf 1e-54
3a8i_A364 Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Len 2e-49
3a8k_A364 Crystal Structure Of Etd97n-Ehred Complex Length = 8e-49
1v5v_A401 Crystal Structure Of A Component Of Glycine Cleavag 1e-48
1vlo_A381 Crystal Structure Of Aminomethyltransferase (T Prot 3e-44
3tfh_A369 Dmsp-Dependent Demethylase From P. Ubique - Apo Len 4e-21
1vrq_A964 Crystal Structure Of Heterotetrameric Sarcosine Oxi 2e-20
2gag_A965 Heteroteterameric Sarcosine: Structure Of A Diflavi 1e-19
2gah_A965 Heterotetrameric Sarcosine: Structure Of A Diflavin 3e-18
1pj5_A830 Crystal Structure Of Dimethylglycine Oxidase Of Art 4e-18
3gsi_A827 Crystal Structure Of D552a Dimethylglycine Oxidase 4e-17
3ttg_A355 Crystal Structure Of Putative Aminomethyltransferas 8e-05
>pdb|1WSR|A Chain A, Crystal Structure Of Human T-Protein Of Glycine Cleavage System Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/373 (52%), Positives = 253/373 (67%), Gaps = 4/373 (1%)
Query: 35  ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLK 94
           E L++T L+DFH+A+GGKMV FAGWS+P+QY+DS  +S L+ RQ+ SLFDVSHM    + 
Sbjct: 3   EVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKIL 62
Query: 95  GKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRD 154
           G D V  +E LV+ D+A L P  GTL++FTNE GG +DD ++T   + H+Y+V NAGC +
Sbjct: 63  GSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWE 122
Query: 155 KDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI 214
           KDLA ++  ++    +G DV   + D  +LLALQGP AA VLQ    DDL KL F    +
Sbjct: 123 KDLALMQDKVRELQNQGRDVGLEVLDN-ALLALQGPTAAQVLQAGVADDLRKLPFMTSAV 181
Query: 215 LDINGVS-CFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLE 273
           +++ GVS C +TR GYTGEDG EISVP   AV LA AIL+  E  V+L GL ARDSLRLE
Sbjct: 182 MEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILKNPE--VKLAGLAARDSLRLE 239
Query: 274 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGG 333
           AGLCLYGND+++H TPVE  L+W +GKRRRA   F GA+ I+ QL      RRVG    G
Sbjct: 240 AGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEG 299
Query: 334 PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDG 393
            P R+HS + + +G  IG +TSG  SP LKKN+AMGYV     + GT + +EVR K    
Sbjct: 300 APMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMA 359
Query: 394 NITKMPFVPTKYY 406
            ++KMPFVPT YY
Sbjct: 360 VVSKMPFVPTNYY 372
>pdb|3GIR|A Chain A, Crystal Structure Of Glycine Cleavage System Aminomethyltransferase T From Bartonella Henselae Length = 393 Back     alignment and structure
>pdb|1WOO|A Chain A, Crystal Structure Of T-Protein Of The Glycine Cleavage System Length = 364 Back     alignment and structure
>pdb|1YX2|A Chain A, Crystal Structure Of The Probable Aminomethyltransferase From Bacillus Subtilis Length = 365 Back     alignment and structure
>pdb|3A8I|A Chain A, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex Length = 364 Back     alignment and structure
>pdb|3A8K|A Chain A, Crystal Structure Of Etd97n-Ehred Complex Length = 364 Back     alignment and structure
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5 A Resolution Length = 401 Back     alignment and structure
>pdb|1VLO|A Chain A, Crystal Structure Of Aminomethyltransferase (T Protein; Tetrahydrofolate-Dependent) Of Glycine Cleavage System (Np417381) From Escherichia Coli K12 At 1.70 A Resolution Length = 381 Back     alignment and structure
>pdb|3TFH|A Chain A, Dmsp-Dependent Demethylase From P. Ubique - Apo Length = 369 Back     alignment and structure
>pdb|1VRQ|A Chain A, Crystal Structure Of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 In Complex With Folinic Acid Length = 964 Back     alignment and structure
>pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 965 Back     alignment and structure
>pdb|2GAH|A Chain A, Heterotetrameric Sarcosine: Structure Of A Diflavin Metaloenzyme At 1.85 A Resolution Length = 965 Back     alignment and structure
>pdb|1PJ5|A Chain A, Crystal Structure Of Dimethylglycine Oxidase Of Arthrobacter Globiformis In Complex With Acetate Length = 830 Back     alignment and structure
>pdb|3GSI|A Chain A, Crystal Structure Of D552a Dimethylglycine Oxidase Mutant Of Arthrobacter Globiformis In Complex With Tetrahydrofolate Length = 827 Back     alignment and structure
>pdb|3TTG|A Chain A, Crystal Structure Of Putative Aminomethyltransferase From Leptospirillum Rubarum Length = 355 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query409
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 0.0
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 0.0
1v5v_A401 Aminomethyltransferase; glycine-cleavage sytem, st 1e-175
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 1e-174
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 1e-170
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 1e-170
3ttg_A355 Putative aminomethyltransferase; structural genomi 1e-151
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 1e-122
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 1e-69
2gag_A965 Heterotetrameric sarcosine oxidase alpha-subunit; 7e-46
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 6e-11
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Length = 375 Back     alignment and structure
 Score =  609 bits (1574), Expect = 0.0
 Identities = 196/375 (52%), Positives = 253/375 (67%), Gaps = 4/375 (1%)

Query: 35  ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLK 94
           E L++T L+DFH+A+GGKMV FAGWS+P+QY+DS  +S L+ RQ+ SLFDVSHM    + 
Sbjct: 3   EVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKIL 62

Query: 95  GKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRD 154
           G D V  +E LV+ D+A L P  GTL++FTNE GG +DD ++T   + H+Y+V NAGC +
Sbjct: 63  GSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWE 122

Query: 155 KDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFRI 214
           KDLA ++  ++    +G DV   + D  +LLALQGP AA VLQ    DDL KL F    +
Sbjct: 123 KDLALMQDKVRELQNQGRDVGLEVLD-NALLALQGPTAAQVLQAGVADDLRKLPFMTSAV 181

Query: 215 LDINGVS-CFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARDSLRLE 273
           +++ GVS C +TR GYTGEDG EISVP   AV LA AIL+    +V+L GL ARDSLRLE
Sbjct: 182 MEVFGVSGCRVTRCGYTGEDGVEISVPVAGAVHLATAILK--NPEVKLAGLAARDSLRLE 239

Query: 274 AGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGG 333
           AGLCLYGND+++H TPVE  L+W +GKRRRA   F GA+ I+ QL      RRVG    G
Sbjct: 240 AGLCLYGNDIDEHTTPVEGSLSWTLGKRRRAAMDFPGAKVIVPQLKGRVQRRRVGLMCEG 299

Query: 334 PPARSHSKVHDEQGNPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDG 393
            P R+HS + + +G  IG +TSG  SP LKKN+AMGYV     + GT + +EVR K    
Sbjct: 300 APMRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCEYSRPGTMLLVEVRRKQQMA 359

Query: 394 NITKMPFVPTKYYKP 408
            ++KMPFVPT YY  
Sbjct: 360 VVSKMPFVPTNYYTL 374
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Length = 393 Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Length = 401 Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Length = 365 Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Length = 364 Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Length = 381 Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Length = 355 Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Length = 369 Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830 Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965 Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Length = 338 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query409
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 100.0
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 100.0
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 100.0
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 100.0
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 100.0
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 100.0
1v5v_A401 Aminomethyltransferase; glycine-cleavage sytem, st 100.0
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 100.0
2gag_A965 Heterotetrameric sarcosine oxidase alpha-subunit; 100.0
3ttg_A355 Putative aminomethyltransferase; structural genomi 100.0
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 100.0
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 99.97
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 99.96
2gag_C210 Heterotetrameric sarcosine oxidase gamma-subunit; 97.47
1x31_C206 Sarcosine oxidase gamma subunit; heterotetrameric 97.4
3geh_A 462 MNME, tRNA modification GTPase MNME; G protein, U3 92.21
3gir_A393 Aminomethyltransferase; glycine cleavage system, a 91.51
1wsr_A375 Aminomethyltransferase; glycine-cleavage sytem; 2. 90.79
3gee_A 476 MNME, tRNA modification GTPase MNME; G protein, cy 90.34
1yx2_A365 Aminomethyltransferase; glycine cleavage system T 90.1
1wos_A364 Aminomethyltransferase; T-protein; 1.84A {Thermoto 90.07
1v5v_A 401 Aminomethyltransferase; glycine-cleavage sytem, st 88.64
1vly_A338 SPOT PR51, unknown protein from 2D-PAGE; structura 88.62
1vlo_A381 Aminomethyltransferase; NP417381, tetrahydrofolat 88.34
3tfi_A369 GCVT-like aminomethyltransferase protein; demethyl 86.12
3ttg_A355 Putative aminomethyltransferase; structural genomi 84.78
1pj5_A830 N,N-dimethylglycine oxidase; channelling, FAD bind 81.38
1xzp_A 482 Probable tRNA modification GTPase TRME; GTP-bindin 81.28
2gag_A 965 Heterotetrameric sarcosine oxidase alpha-subunit; 80.36
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
Probab=100.00  E-value=2.3e-87  Score=671.87  Aligned_cols=366  Identities=40%  Similarity=0.646  Sum_probs=340.6

Q ss_pred             hccCCCcccccCcchHHHHHCCCeEeecCCcccccccccCHHHHHHHHHhCeEEEeCCCceeEEEEcCCHHHHHhhcccc
Q 015314           29 HFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIA  108 (409)
Q Consensus        29 ~~~~~~~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~~~~~E~~a~r~~~~l~DlS~~~~l~v~G~Da~~fLq~~~t~  108 (409)
                      .|.+.  ++|+||||++|.++||+|.+++||+||.||++++.+||+|+|++|+|||+|||++|+|+||||.+|||+++||
T Consensus        27 ~~~~~--~~r~tpl~~~h~~~GA~~~~~~gw~~P~~y~~~~~~E~~avR~~~gl~DvSh~g~i~V~G~DA~~fL~~l~tn  104 (393)
T 3gir_A           27 EFETS--SLKTLPLYELHEKAGAKFGAFAGWRMPLTYPLGVLKEHLHTRAHAGLFDISHMKLIAVEGPKAVEFLSYALPV  104 (393)
T ss_dssp             -------CCEECTTHHHHHHTTCEEEEETTEEEEEECTTCHHHHHHHHHHSEEEEECTTSEEEEEESTTHHHHHHHHSSS
T ss_pred             CCCcc--ccccCcchHHHHHcCCEEEeeCCEecchhhcCCHHHHHHHHHhCeEEEeCCCcEEEEEECCCHHHHhhhhccc
Confidence            45554  6999999999999999999999999999998559999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhccCCCCCeEEEEeCCeEEEEEe
Q 015314          109 DVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQ  188 (409)
Q Consensus       109 di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~~~~~~~V~i~~~~~~~~l~l~  188 (409)
                      ||++|++|+++|++|||++|+|++|++|+|+++|+|+|++++++.+.+++||++++..     .+|+| .++++++|+||
T Consensus       105 dv~~l~~G~~~yt~~ln~~G~i~dD~~V~rl~~d~~~lv~~a~~~~~~~~~L~~~~~~-----~~V~i-~~~~~a~lalq  178 (393)
T 3gir_A          105 DAALLKIGQSRYSYLLNERAGILDDLILTRLAECRFMLVANAGNAQADFAELEKRAFG-----FECQV-IALERVLLALQ  178 (393)
T ss_dssp             CTTTSCTTBEEEEEEECTTCCEEEEEEEEEEETTEEEEEECGGGHHHHHHHHHHHTTT-----SSCEE-EECCCEEEEEE
T ss_pred             ccccCCCCcEEEEEEECCCCcEEEEEEEEEecCCEEEEEECchhHHHHHHHHHhhccC-----CceEE-EECCEEEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999864     48999 88889999999


Q ss_pred             CCChHHHHhccccCCCCCCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccHHHHHHHHHhccCCCceEecccchh
Q 015314          189 GPLAAPVLQHLTKDDLSKLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERAVDLAKAILEKSEGKVRLTGLGARD  268 (409)
Q Consensus       189 GP~a~~vL~~l~~~~l~~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a~~l~~~L~~ag~~~~~~~G~~a~~  268 (409)
                      ||+|+++|+++++ +++.+||+++..+.+   +++++|++|+||+||||+++++.+..+|+.|+++  .++.|+|+.+|+
T Consensus       179 GP~A~~vL~~l~~-~l~~~~~~~~~~~~i---~~~i~R~gytGE~G~Ei~~p~~~a~~lw~~L~~a--~g~~p~Gl~A~d  252 (393)
T 3gir_A          179 GPQAAAVLADAGL-PGNELLFMQGFEPQQ---DWFITRSGYTGEDGFEIALPIGCARALAEKLLGD--SRVEWVGLAARD  252 (393)
T ss_dssp             STTHHHHHHHTTC-CCTTCCTTBEECSST---TCEEESCCSSSSSEEEEEECHHHHHHHHHHHHTS--TTEEECCHHHHH
T ss_pred             CccHHHHHHHhcC-chhhcccceeEEEEE---eEEEEeCCCCCCCeEEEEEEHHHHHHHHHHHHhc--CCceeccccchh
Confidence            9999999999987 888899988776554   6899999999999999999999999999999997  479999999999


Q ss_pred             hhhhhcccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcCCCeEEEEEEeCC-CCCCCCCeEecCCC
Q 015314          269 SLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEGPPVRRVGFFAGG-PPARSHSKVHDEQG  347 (409)
Q Consensus       269 ~lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g~~rrlv~l~~~~-~~~~~g~~v~~~~g  347 (409)
                      +||||+|+|.||+|++++++|+|+||+|+|+|+|.++|||+|||+|+|++++|++||||+|.+++ .+|.+|++|++.+|
T Consensus       253 ~LRiEaG~p~~g~dl~~~~~P~EagL~~~V~~~k~~Kg~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~~~G~~v~~~~g  332 (393)
T 3gir_A          253 SLRLEAGLCLHGNDITPDTTPIDAALTWAVPKNVREKAQFYGAKAFLESLQKGPSRCRVGLKPQTRQPIRAGAVLFDNEG  332 (393)
T ss_dssp             HHHHHTTCCCBTTTBCTTCCTTTTTCGGGSCHHHHHHCCSTTHHHHHHHHHHCCSSEEEEEEESSSSCCCTTCEEECTTS
T ss_pred             hHHHhcCcccchhhcCCCCCHHHCCchheecCCCCCCCCCcCHHHHHHHHhcCCCeEEEEEEECCCcCCCCCCEEEccCC
Confidence            99999999999999999999999999999999831118999999999999999999999999985 56789999986689


Q ss_pred             cEeEEEEeeeecCCCCceEEEEEEcCCccCCCCEEEEEECCeEEeEEEEcCCCcCCCCCCC
Q 015314          348 NPIGEITSGGFSPCLKKNIAMGYVKSGLHKAGTKVKIEVRGKAYDGNITKMPFVPTKYYKP  408 (409)
Q Consensus       348 ~~vG~vtS~~~s~~l~~~iala~l~~~~~~~g~~l~v~~~g~~~~a~v~~~Pf~~~~~~~~  408 (409)
                      +.||+|||++|||+++++||||||+.+++++|+.++|+++|++++|+|+++||++++|||+
T Consensus       333 ~~vG~VTS~~~sp~l~~~iaLa~v~~~~~~~G~~l~v~i~g~~~~a~v~~~PF~~~~~~~~  393 (393)
T 3gir_A          333 NRIGVVTSGGFGPSFDGPVAMGYVPVAWKVEGTEVFTELRGKKIALSVHSLPFVEQRYFKG  393 (393)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEECGGGCSTTCEEEEEETTEEEEEEEECSCSSCCCCCC-
T ss_pred             eEEEEEEEEEECCCCCcEEEEEEEcHHHcCCCCEEEEEECCEEEEEEEecCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999985
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>2gag_C Heterotetrameric sarcosine oxidase gamma-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_C* Back     alignment and structure
>1x31_C Sarcosine oxidase gamma subunit; heterotetrameric sarcosine oxidase, flavoenzyme, oxidoreduct; HET: FAD NAD FMN; 2.15A {Corynebacterium SP} PDB: 1vrq_C* 3ad7_C* 3ad8_C* 3ad9_C* 3ada_C* Back     alignment and structure
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Back     alignment and structure
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae} Back     alignment and structure
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A* Back     alignment and structure
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Back     alignment and structure
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis} Back     alignment and structure
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A Back     alignment and structure
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1 Back     alignment and structure
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A Back     alignment and structure
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A* Back     alignment and structure
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A* Back     alignment and structure
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum} Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Back     alignment and structure
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 409
d1v5va2310 d.250.1.1 (A:3-312) Glycine cleavage system T prot 7e-61
d1vloa2274 d.250.1.1 (A:4-277) Glycine cleavage system T prot 2e-60
d1pj5a4315 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase 4e-56
d1wosa2278 d.250.1.1 (A:1-278) Glycine cleavage system T prot 5e-52
d1v5va189 b.44.2.1 (A:313-401) Glycine cleavage system T pro 6e-23
d1vlya2241 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-t 4e-21
d1wosa183 b.44.2.1 (A:279-361) Glycine cleavage system T pro 2e-19
d1vloa190 b.44.2.1 (A:278-367) Glycine cleavage system T pro 1e-18
d1pj5a188 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, 5e-15
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 310 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: Glycine cleavage system T protein, GcvT
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  197 bits (502), Expect = 7e-61
 Identities = 91/313 (29%), Positives = 165/313 (52%), Gaps = 31/313 (9%)

Query: 35  ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLK 94
           + +K+  + D+H  +  K+  FAGW MPI Y  SI E  L  R    +FDVSHM  +  +
Sbjct: 1   QMVKRVHIFDWHKEHARKIEEFAGWEMPIWY-SSIKEEHLAVRNAVGIFDVSHMGEIVFR 59

Query: 95  GKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRD 154
           GKD + FL+ +   D++     +GT T+  NE G   D++++  + ++   ++ ++   +
Sbjct: 60  GKDALKFLQYVTTNDISKPPAISGTYTLVLNERGAIKDETLVFNMGNNEYLMICDSDAFE 119

Query: 155 KDLAHIEAHMKSFTAKGGDVSW--HIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEF 212
           K  A      ++                + ++ A+QGP A  + + L   D++++++ + 
Sbjct: 120 KLYAWFTYLKRTIEQFTKLDLEIELKTYDIAMFAVQGPKARDLAKDLFGIDINEMWWFQA 179

Query: 213 RILDINGVSCFLTRTGYTGEDGFEISVPS--------------ERAVDLAKAILEK-SEG 257
           R ++++G+   L+R+GYTGE+GFE+ +                E+A+ + + ILE+  + 
Sbjct: 180 RWVELDGIKMLLSRSGYTGENGFEVYIEDANPYHPDESKRGEPEKALHVWERILEEGKKY 239

Query: 258 KVRLTGLGARDSLRLEAGLCLYGNDMEQ---------HVTPVEAGLTWAIGKRRRAEGGF 308
            ++  GLGARD+LRLEAG  LYGN+ ++          VTP++A L +AI      +  F
Sbjct: 240 GIKPCGLGARDTLRLEAGYTLYGNETKELQLLSTDIDEVTPLQANLEFAIYW----DKDF 295

Query: 309 LGAEKILKQLDEG 321
           +G + +LKQ + G
Sbjct: 296 IGKDALLKQKERG 308
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Length = 274 Back     information, alignment and structure
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Length = 315 Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Length = 278 Back     information, alignment and structure
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Length = 89 Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 241 Back     information, alignment and structure
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Length = 83 Back     information, alignment and structure
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Length = 90 Back     information, alignment and structure
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} Length = 88 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query409
d1pj5a4315 N,N-dimethylglycine oxidase domain 3 {Arthrobacter 100.0
d1v5va2310 Glycine cleavage system T protein, GcvT {Pyrococcu 100.0
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 100.0
d1vloa2274 Glycine cleavage system T protein, GcvT {Escherich 100.0
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 100.0
d1v5va189 Glycine cleavage system T protein, GcvT {Pyrococcu 99.82
d1pj5a188 N,N-dimethylglycine oxidase, C-terminal domain {Ar 99.75
d1wosa183 Glycine cleavage system T protein, GcvT {Thermotog 99.74
d1vloa190 Glycine cleavage system T protein, GcvT {Escherich 99.65
d1vlya182 Hypothetical protein YgfZ, C-terminal domain {Esch 97.82
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 93.39
d1xzpa3117 TrmE formyl-THF-binding domain {Thermotoga maritim 90.71
d1vlya2241 Hypothetical protein YgfZ, N-terminal domain {Esch 90.65
d1wosa2278 Glycine cleavage system T protein, GcvT {Thermotog 84.11
d1v5va2310 Glycine cleavage system T protein, GcvT {Pyrococcu 80.92
>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3 {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Folate-binding domain
superfamily: Folate-binding domain
family: Aminomethyltransferase folate-binding domain
domain: N,N-dimethylglycine oxidase domain 3
species: Arthrobacter globiformis [TaxId: 1665]

Probab=100.00  E-value=9.9e-69  Score=521.54  Aligned_cols=283  Identities=24%  Similarity=0.391  Sum_probs=261.5

Q ss_pred             cccccCcchHHHHHCCCeEeecCCccccccccc---------------------------CHHHHHHHHHhCeEEEeCCC
Q 015314           35 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKD---------------------------SIMESTLNCRQNGSLFDVSH   87 (409)
Q Consensus        35 ~~~r~tpl~~~~~~~Ga~~~~~~g~~~p~~f~~---------------------------~~~~E~~a~r~~~~l~DlS~   87 (409)
                      |++|+||||++|+++||+|++++|||||.||..                           .+.+||+|+|++|||||+||
T Consensus         1 R~lr~spl~~~h~~~GA~f~~~~Gwe~P~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~E~~avR~~vglfD~S~   80 (315)
T d1pj5a4           1 RNLRVSPFHARHKELGAFFLEAGGWERPYWFEANAALLKEMPAEWLPPARDAWSGMFSSPIAAAEAWKTRTAVAMYDMTP   80 (315)
T ss_dssp             CCSBCCTTHHHHHHTTEEEEEETTEEEEEEEGGGGGGGGGSCGGGCCCCCCHHHHTTCCTHHHHHHHHHHHSCEEEECTT
T ss_pred             CCCccCccHHHHHHcCCEEEEecceecccccCcCCccccccccccccccccccccccccHHHHHHHHHHHHhcceecccc
Confidence            789999999999999999999999999999952                           16899999999999999999


Q ss_pred             ceeEEEEcCCHHHHHhhcccccCCCCCCCcEEEEEEEcCCCceeEeEEEEEecCCEEEEEEcCCCcHHHHHHHHHHHhhc
Q 015314           88 MCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF  167 (409)
Q Consensus        88 ~~~l~v~G~Da~~fLq~~~t~di~~l~~g~~~yt~~Ln~~G~v~~d~~V~r~~~d~~lL~~~~~~~~~~~~~L~~~~~~~  167 (409)
                      +++|+|+|+||.+|||+++|||++. .+|+++|++|||++|+|++|++|+|+++++|+|+++++.......++..+....
T Consensus        81 ~g~i~v~G~da~~fL~~l~t~di~~-~~G~~~yt~~ln~~Ggi~~D~~v~r~~~~~f~l~~~~~~~~~~~~~~~~~~~~~  159 (315)
T d1pj5a4          81 LKRLEVSGPGALKLLQELTTADLAK-KPGAVTYTLLLDHAGGVRSDITVARLSEDTFQLGANGNIDTAYFERAARHQTQS  159 (315)
T ss_dssp             SCEEEEESTTHHHHHHHHBSSCCCS-CTTBEEEEEEECTTSCEEEEEEEEEEETTEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEeeccchHHHhhhhhcccccc-ccCceeEEEeeccccCeeeeeeeeecccccccccccchhhhhhhhhhhhhhhhc
Confidence            9999999999999999999999985 789999999999999999999999999999999998888788888887665432


Q ss_pred             cCCCCCeEEE-EeCCeEEEEEeCCChHHHHhccccCCCC--CCCCceeEEEEECCeeEEEEeeCCCCCCeeEEEeecccH
Q 015314          168 TAKGGDVSWH-IHDERSLLALQGPLAAPVLQHLTKDDLS--KLYFGEFRILDINGVSCFLTRTGYTGEDGFEISVPSERA  244 (409)
Q Consensus       168 ~~~~~~V~i~-~~~~~~~l~l~GP~a~~vL~~l~~~~l~--~l~~~~~~~~~i~g~~~~l~R~~~~Ge~G~el~~~~~~a  244 (409)
                      .....+|+|+ .++++++|+||||+|+++|++++..+++  .+||++++.+.++|.+++++|+|||||+||||++|++.+
T Consensus       160 ~~~~~~v~i~d~t~~~~~laiqGP~s~~vL~~l~~~~~~~~~~~~~~~~~~~i~g~~v~i~R~g~tGE~G~Ei~~~~~~a  239 (315)
T d1pj5a4         160 GSATDWVQVRDTTGGTCCIGLWGPLARDLVSKVSDDDFTNDGLKYFRAKNVVIGGIPVTAMRLSYVGELGWELYTSADNG  239 (315)
T ss_dssp             SCTTCCCEEEECGGGEEEEEEESTTHHHHHTTTCCSCCSTTTSCTTBEEEEEETTEEEEEECCCTTSSSEEEEEEEHHHH
T ss_pred             ccccccceeEecCcceeeeeecCchHHHHHHHccccccccccccccceeEEEECCEEEEEEecCccCCCeEEecccHHHH
Confidence            2234579995 4788999999999999999999877664  589999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc-CCCceEecccchhhhhhhcccccccCCCCCCCCccccccccccccccCcCCCCcCHHHHHhhHhcC
Q 015314          245 VDLAKAILEKS-EGKVRLTGLGARDSLRLEAGLCLYGNDMEQHVTPVEAGLTWAIGKRRRAEGGFLGAEKILKQLDEG  321 (409)
Q Consensus       245 ~~l~~~L~~ag-~~~~~~~G~~a~~~lRiE~G~p~~g~d~~~~~~P~E~gl~~~V~f~K~~~GcyiGqE~lar~~~~g  321 (409)
                      .++|+.|++++ ++|+.|+|+.|+++||||+|+|.||+|++++++|+|+||+|+|+|+|   +||+|||+|++++.+|
T Consensus       240 ~~l~~~l~~ag~~~gi~p~G~~A~d~LRlE~G~~~~g~d~~~~~~P~EagL~~~v~~~K---~~FiGkeAl~~~~~~g  314 (315)
T d1pj5a4         240 QRLWDALWQAGQPFGVIAAGRAAFSSLRLEKGYRSWGTDMTTEHDPFEAGLGFAVKMAK---ESFIGKGALEGRTEEA  314 (315)
T ss_dssp             HHHHHHHHHHHGGGTCEEECHHHHHHHHHHTTCCCBTTTBCTTSCTTTTTCGGGCCTTS---SCCTTHHHHTTCCSTT
T ss_pred             HHHHHHHHhhhhcCCcEecCHHHHHHHHHHcCCCcccccCCCCCCHHHcCcchhhcCCC---CCccCHHHHHHHHhhC
Confidence            99999999998 78999999999999999999999999999999999999999999999   8999999999887665
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xzpa3 d.250.1.2 (A:1-117) TrmE formyl-THF-binding domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vlya2 d.250.1.1 (A:3-243) Hypothetical protein YgfZ, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure