Citrus Sinensis ID: 015319

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKNNKGNTHRKGGHHNYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNSE
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEccccEEEEEEEEEEcccccccEEEEEccEEEcccccccccccccccEEEEEEEcEEEEEcEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccEEEEcEEEEcccccEEEEEcEEcEEEEEEEEEccccccccccccccccccEEEEcccccccccEEEEccccEEEEEEEEEEccccEEEEEccccccccccEEEEEEEEEEEEccccEEEEEEcccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHcccccccccccHHHHHHHHHHHHcccccEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHccccccEEEEEEEEcEEEEEEcEEEcccccHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEccccccEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
MRGLSFRSLAFLFLIAFLVWSASFETcnarrgrhwrhgrssnsvslskknnkgnthrkgghhnyhngkpkpkpkpkpkapshnkspplapavptkpvydvpppshhssvfnvkdfgakgngvsddTKAFEAAWAAACKVEASImvvpaesvflvgpmsfsgpycqaniifqldgtiiaptgskdwgkglLWWLDFTklkgitiqgkgiidgrgsvwwqdypyddpiddeskliiplhnntlpykpptpirselsgkmpsikptalrfygsfnvtvtgitiqnspqchlkfdncigVVVHdvsvsspgdspntdgihlqnskdvlihtsnlacgddcvsiqtgcsnvyvhnvncgpghgisigslgkdntkacvSNITVRDVMMHNTMNGVRIKTWQVmipsgtqcynse
Flexible Loop (DISEMBL)
MRGLSFRSLAFLFLIAFLVWSASFETCNARrgrhwrhgrssnsvslskknnkgnthrkgghhnyhngkpkpkPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIqgkgiidgrgsvWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGisigslgkdnTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSgtqcynse
Low Complexity Region (SEG)
MRGLSFRSLAFLFLIAFLVWSASFETCNArrgrhwrhgrssnsvslskknnkGNTHRKGGHHNYHNGkpkpkpkpkpkapshnksppLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTkafeaawaaackveaSIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNSE
Disordered region (IsUnstruct)
*****FRSLAFLFLIAFLVWSASFETCNARRGRHW**************************************************************************FNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLP******************KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSV***********IHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQ*****
Disordered Region (DISOPRED)
****SFRSLAFLFLIAFLVWSASFETCNA**************************************************************************SHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ*************
Disordered Region (DISEMBL)
MRGLSFRSLAFLFLIAFLVWSASFETCNARR*******************************************************PLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNSE
Disordered Region (DISPRO)
***LSFRSLAFLFLIAFLVWSASFETCNARR***************************************************************************SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVM***********
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKNNKGNTHRKGGHHNYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
Q949Z1	475	Polygalacturonase At1g481	no	no	0.662	0.570	0.461	7e-68
P35336	467	Polygalacturonase OS=Acti	N/A	no	0.633	0.554	0.413	2e-55
P43212	514	Polygalacturonase OS=Cryp	N/A	no	0.638	0.507	0.394	1e-54
Q7M1E7	514	Polygalacturonase OS=Cham	N/A	no	0.640	0.509	0.396	3e-53
Q9SFB7	439	Polygalacturonase QRT2 OS	no	no	0.623	0.580	0.391	9e-51
Q9FY19	507	Polygalacturonase OS=Juni	N/A	no	0.635	0.512	0.392	9e-51
Q02096	462	Polygalacturonase OS=Pers	N/A	no	0.643	0.569	0.368	4e-50
P48978	460	Polygalacturonase OS=Malu	N/A	no	0.650	0.578	0.373	1e-49
Q94AJ5	444	Probable polygalacturonas	no	no	0.665	0.612	0.376	2e-49
O23147	431	Polygalacturonase ADPG1 O	no	no	0.635	0.603	0.377	8e-49

>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1

 Score =  258 bits (658), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 138/299 (46%), Positives = 185/299 (61%), Gaps = 28/299 (9%)

Query: 101 PPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFS 160
           P  S    VF+V  FGA G+G  DDT AF+ AW AAC VE+ +++ P   VF +    FS
Sbjct: 71  PGDSDSGCVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFKITSTIFS 130

Query: 161 GPYCQANIIFQLDGTIIAPTGSKDWGK--GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQ 218
           GP C+  ++FQLDG ++ P G ++W +      WL F +L G T  GKG ++G G  WW 
Sbjct: 131 GP-CKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWWD 189

Query: 219 DYPYDDPIDDESKLIIPLHNNTLPYKP-PTPIRSELSGKMPSIKPTALRFYGSFNVTVTG 277
                                 LP KP   P  S  SG  P   PT +RF+ S N+ V G
Sbjct: 190 ----------------------LPCKPHRGPDGSSSSG--PCASPTMIRFFMSNNIEVKG 225

Query: 278 ITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCV 337
           + IQNSPQ H+KFD C GV+++++ +SSP  SPNTDGIHL N++ V I+ S ++ GDDC+
Sbjct: 226 LRIQNSPQFHMKFDGCQGVLINEIQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCI 285

Query: 338 SIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           SI TGCS+V +  V CGP HGISIGSLG  N++ACVSNITVR+ ++ ++ NG+R+KTWQ
Sbjct: 286 SIGTGCSDVDIQGVTCGPSHGISIGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQ 344

Polygalacturonase not involved in the final stages of pod shatter.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5

>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1

 Score =  217 bits (552), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/290 (41%), Positives = 168/290 (57%), Gaps = 31/290 (10%)

Query: 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQA 166
           S   NV DFGAKG+G  DDTKAFE AW AAC   +S +++  +  +LV P+SFSGP C++
Sbjct: 87  SKTVNVDDFGAKGDG-RDDTKAFEKAWKAACSSTSSAVLLVPKKNYLVRPISFSGP-CKS 144

Query: 167 NIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPI 226
            +  Q+ GTI A     D+ K    WL F  ++ + ++G G I+G G +WWQ+       
Sbjct: 145 GLTMQIYGTIEASDDRSDYRKDGRHWLVFDSVQNLRVEGGGTINGNGKIWWQNSCKT--- 201

Query: 227 DDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQC 286
                      N  LP K                 PTAL FY S +V V  + I+N+ Q 
Sbjct: 202 -----------NKALPCKDA---------------PTALTFYKSKHVIVKNLKIENAQQI 235

Query: 287 HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNV 346
           H+ FDNC+ V   ++ V++P +SPNTDGIH+  ++++ I +  +  GDDC+SI  G   V
Sbjct: 236 HVSFDNCVNVQASNLMVTAPENSPNTDGIHVTGTQNIHISSCVIGTGDDCISIVNGSRKV 295

Query: 347 YVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
            V+++ CGPGHGISIGSLG  N++A VS++ V    +  T NGVRIKTWQ
Sbjct: 296 RVNDITCGPGHGISIGSLGYGNSEAHVSDVVVNGAKLCGTTNGVRIKTWQ 345

Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.

Actinidia deliciosa (taxid: 3627)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1

 Score =  214 bits (544), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 114/289 (39%), Positives = 168/289 (58%), Gaps = 28/289 (9%)

Query: 108 SVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQAN 167
           ++FNV+ +GA G+G  D T+AF  AW AACK  +++++VP    F+V  + F+GP CQ +
Sbjct: 57  NIFNVEKYGAVGDGKHDCTEAFSTAWQAACKKPSAMLLVPGNKKFVVNNLFFNGP-CQPH 115

Query: 168 IIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPID 227
             F++DG I A      W    +W L F KL G T+ GKG+IDG+G  WW          
Sbjct: 116 FTFKVDGIIAAYQNPASWKNNRIW-LQFAKLTGFTLMGKGVIDGQGKQWWA--------- 165

Query: 228 DESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCH 287
                          +     I ++        +PTA++F  S  + + G+ + NSP+ H
Sbjct: 166 -----------GQCKWVNGREICNDRD------RPTAIKFDFSTGLIIQGLKLMNSPEFH 208

Query: 288 LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVY 347
           L F NC GV +  +S+++P DSPNTDGI +  SK+  +  + +  GDDCV+I TG SN+ 
Sbjct: 209 LVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTGSSNIV 268

Query: 348 VHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           + ++ CGPGHGISIGSLG++N++A VS + V      +T NG+RIKTWQ
Sbjct: 269 IEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQ 317

Cryptomeria japonica (taxid: 3369)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1

 Score =  209 bits (532), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 115/290 (39%), Positives = 168/290 (57%), Gaps = 28/290 (9%)

Query: 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQA 166
           ++VFNV+ +GA G+G  D T+AF   W AACK  +++++VPA   F V  + F GP CQ 
Sbjct: 56  ATVFNVEQYGAVGDGKHDSTEAFATTWNAACKKASAVLLVPANKKFFVNNLVFRGP-CQP 114

Query: 167 NIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPI 226
           ++ F++DGTI+A      W K    WL F +L    + G G+IDG+G  WW         
Sbjct: 115 HLSFKVDGTIVAQPDPARW-KNSKIWLQFAQLTDFNLMGTGVIDGQGQQWWAG------- 166

Query: 227 DDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQC 286
             + K++                R+  + +    +PTA++   S +VTV  +T+ NSP+ 
Sbjct: 167 --QCKVVNG--------------RTVCNDRN---RPTAIKIDYSKSVTVKELTLMNSPEF 207

Query: 287 HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNV 346
           HL F  C GV +  + + +P DSPNTDGI +  SK   I    +  GDDC++I TG SN+
Sbjct: 208 HLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTGSSNI 267

Query: 347 YVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
            + ++ CGPGHGISIGSLG+DN++A VS++ V      +T NG+RIKTWQ
Sbjct: 268 TIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQ 317

Chamaecyparis obtusa (taxid: 13415)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2

 Score =  201 bits (511), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 113/289 (39%), Positives = 162/289 (56%), Gaps = 34/289 (11%)

Query: 110 FNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVV-PAESVFLVGPMSFSGPYCQANI 168
           FNV  FGAK NG +DD+KAF  AW AAC     + +V P    +++  ++FSGP   + I
Sbjct: 71  FNVNTFGAKANG-NDDSKAFMKAWEAACSSTGIVYIVAPKNRDYMLKAVTFSGPCKSSLI 129

Query: 169 IFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDD 228
           IF++ G I A     D+ K    W+ F  +  + ++G G IDG G +WW           
Sbjct: 130 IFKIYGRIEAWENPSDY-KERRHWIVFENVNNLRVEGGGRIDGNGHIWW----------- 177

Query: 229 ESKLIIPLHNNTLPYKPPTPIRSELSGKMPSI-KPTALRFYGSFNVTVTGITIQNSPQCH 287
                              P   +++ ++P +  PTA+ F    N+ V+ I ++N+ Q H
Sbjct: 178 -------------------PKSCKINPQLPCLGAPTAVTFVECNNLRVSNIRLENAQQMH 218

Query: 288 LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVY 347
           L F +C  V   ++ V+SP DSPNTDGIH+  ++++LI  S +  GDDC+SI +G  NV 
Sbjct: 219 LTFQDCKNVKALNLMVTSPADSPNTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVR 278

Query: 348 VHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
              + CGPGHGISIGSLG+DN++A VSN+ V    +  T NGVRIKTWQ
Sbjct: 279 ATGITCGPGHGISIGSLGEDNSEAYVSNVVVNKATLIGTTNGVRIKTWQ 327

Polygalacturonase required for cell type-specific pectin degradation to separate microspores. Involved in anther dehiscence and floral organ abscission.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1

 Score =  201 bits (511), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 113/288 (39%), Positives = 162/288 (56%), Gaps = 28/288 (9%)

Query: 109 VFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANI 168
           VFNV+ +GA G+G  D T AFE  W AAC   +++ +VPA   F+V  + F GP CQ + 
Sbjct: 59  VFNVEHYGAVGDGKHDSTDAFEKTWNAACNKLSAVFLVPANKKFVVNNLVFYGP-CQPHF 117

Query: 169 IFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDD 228
            F++DGTI A      W    +W + F +L    + G G+IDG+G+ WW D         
Sbjct: 118 SFKVDGTIAAYPDPAKWKNSKIW-MHFARLTDFNLMGTGVIDGQGNRWWSD--------- 167

Query: 229 ESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHL 288
           + K I                R+  + K    +PTA++   S +VTV  +T+ NSP+ HL
Sbjct: 168 QCKTING--------------RTVCNDKG---RPTAIKIDFSKSVTVKELTLTNSPEFHL 210

Query: 289 KFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYV 348
            F  C GV +  + + +P DSPNTDGI +  SK   I    +  GDDCV++ TG SN+ +
Sbjct: 211 VFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTGSSNITI 270

Query: 349 HNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
            ++ CGPGHG+SIGSLGK N+++ VS + +      +T NG+RIKTWQ
Sbjct: 271 KDLTCGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTWQ 318

Juniperus ashei (taxid: 13101)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1

 Score =  199 bits (505), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 168/296 (56%), Gaps = 33/296 (11%)

Query: 102 PPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSG 161
           P +   +  +V DFGA+G+G +DDTKAFE AW  AC    S+++VP    +L+  ++FSG
Sbjct: 77  PETSPDTDISVDDFGARGDG-TDDTKAFEKAWKDACS-SGSVLIVPENKNYLLKQITFSG 134

Query: 162 PYCQANIIFQLDGTIIAPTGSKDW-GKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDY 220
           P C++++  ++ GTI A +   DW G     W++F  +  +T++G G  +G G  WW   
Sbjct: 135 P-CKSDLRVKIRGTIEASSDQSDWVGHNRKRWIEFEDISNLTLEGGGTSNGNGETWW--- 190

Query: 221 PYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITI 280
                            +++   K   P +S          PTAL F    N+ V+ ++I
Sbjct: 191 -----------------DSSCKRKKSLPCKS---------APTALTFRSCKNLIVSDLSI 224

Query: 281 QNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340
           ++S + HL FD C  V+  ++ V++P  SPNTDGIH+  ++ + +  S +  GDDC+SI+
Sbjct: 225 KDSQKMHLSFDKCQDVIASNLMVTAPEHSPNTDGIHITGTQRIHVMNSVIGTGDDCISIE 284

Query: 341 TGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           +G   V   N+ CGPGHGISIGSLG  N++A VS + V    + +T NG+RIKTWQ
Sbjct: 285 SGSKMVIATNITCGPGHGISIGSLGDRNSEAHVSGVLVDGGNLFDTTNGLRIKTWQ 340

Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.

Persea americana (taxid: 3435)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1

 Score =  197 bits (502), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 167/297 (56%), Gaps = 31/297 (10%)

Query: 100 VPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSF 159
           +   S  +   +V DFGAKGNG +DDT+AF  AW AAC    ++++V  +  +LV P+ F
Sbjct: 89  IATSSAPAKTISVDDFGAKGNG-ADDTQAFVKAWKAACSSSGAMVLVVPQKNYLVRPIEF 147

Query: 160 SGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQD 219
           SGP C++ +  Q+ GTI A      + K +  WL F  ++ + + G G I+G G++WW+ 
Sbjct: 148 SGP-CKSQLTLQIYGTIEASEDRSIY-KDIDHWLIFDNVQNLLVVGPGTINGNGNIWWK- 204

Query: 220 YPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGIT 279
                              N+   KP  P          +  PTA+ F    N+ V  + 
Sbjct: 205 -------------------NSCKIKPQPP--------CGTYAPTAVTFNRCNNLVVKNLN 237

Query: 280 IQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSI 339
           IQ++ Q H+ F NCI V    ++V++P DSPNTDGIH+ N++++ I +S +  GDDC+SI
Sbjct: 238 IQDAQQIHVIFQNCINVQASCLTVTAPEDSPNTDGIHVTNTQNITISSSVIGTGDDCISI 297

Query: 340 QTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
            +G   V   ++ CGPGHGISIGSLG+D ++  VS + V    +  T NG+RIKTW+
Sbjct: 298 VSGSQRVQATDITCGPGHGISIGSLGEDGSEDHVSGVFVNGAKLSGTSNGLRIKTWK 354

Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.

Malus domestica (taxid: 3750)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/308 (37%), Positives = 165/308 (53%), Gaps = 36/308 (11%)

Query: 92  VPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAAC--KVEASIMVVPAE 149
           +P +      P S    + +V +FGAKGNGV+DDTKAF  AW  AC  KV+  I+V P  
Sbjct: 37  LPRRQSRSTRPRSER--LLHVGNFGAKGNGVTDDTKAFADAWKTACSSKVKTRILV-PEN 93

Query: 150 SVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDW-GKGLLWWLDFTKLKGITIQGKGI 208
              L+ P+  SGP C+A +  Q+ GTIIAP     W G     WL F  L  +T++G G 
Sbjct: 94  YTCLLRPIDLSGP-CKARLTLQISGTIIAPNDPDVWEGLNRRKWLYFHGLSRLTVEGGGT 152

Query: 209 IDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFY 268
           ++G G  WW+                  HN++ P +                 PTAL F+
Sbjct: 153 VNGMGQEWWERSCK--------------HNHSNPCRGA---------------PTALTFH 183

Query: 269 GSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTS 328
              N+ V  + + +S Q H+   +C  V +  + V +P  SPNTDGIH+  S+ ++I  +
Sbjct: 184 KCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVIAPATSPNTDGIHISVSRGIVIDNT 243

Query: 329 NLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMN 388
            ++ GDDC+SI    + + + N+ CGPGHGISIGSLGK  +   V +ITV   ++ +T N
Sbjct: 244 TVSTGDDCISIVKNSTQISISNIICGPGHGISIGSLGKSKSWEEVRDITVDTAIISDTAN 303

Query: 389 GVRIKTWQ 396
           GVRIKTWQ
Sbjct: 304 GVRIKTWQ 311

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1

 Score =  194 bits (494), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 111/294 (37%), Positives = 160/294 (54%), Gaps = 34/294 (11%)

Query: 106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEA-SIMVVPAESVFLVGPMSFSGPYC 164
            +S  +V +FGAKG+G +DDT+AF+ AW  AC     +  +VP    +L+    F GP C
Sbjct: 64  EASTVSVSNFGAKGDGKTDDTQAFKKAWKKACSTNGVTTFLVPKGKTYLLKSTRFRGP-C 122

Query: 165 QANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQG--KGIIDGRGSVWWQDYPY 222
           ++   FQ+ GT+ A T   D+ K    WL    +  ++I G   GII+G G  WWQ+   
Sbjct: 123 KSLRNFQILGTLSASTKRSDY-KDKNHWLILEDVNNLSIDGGSTGIINGNGKTWWQNSCK 181

Query: 223 DDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQN 282
            D                   KP T              PTAL  Y   N+ V  + ++N
Sbjct: 182 IDK-----------------SKPCTK------------APTALTLYNLKNLNVKNLRVKN 212

Query: 283 SPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG 342
           + Q  +  + C  V V +V +++PGDSPNTDGIH+ N++++ +  S++  GDDC+SI+ G
Sbjct: 213 AQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDG 272

Query: 343 CSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
             N+ + ++ CGPGHGISIGSLG DN+KA VS I V       + NGVRIKT+Q
Sbjct: 273 TQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQ 326

Polygalacturonase involved in cell separation in the final stages of pod shatter and in anther dehiscence. Not involved in floral organ abscission.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
118488018	516	unknown [Populus trichocarpa]	0.931	0.738	0.728	1e-160
224100173	517	predicted protein [Populus trichocarpa]	0.938	0.742	0.734	1e-158
225425577	505	PREDICTED: polygalacturonase At1g48100 [	0.916	0.742	0.696	1e-156
307135969	530	polygalacturonase [Cucumis melo subsp. m	0.955	0.737	0.698	1e-155
356567642	538	PREDICTED: polygalacturonase At1g48100-l	0.955	0.726	0.673	1e-155
449434933	530	PREDICTED: polygalacturonase At1g48100-l	0.955	0.737	0.693	1e-153
357485855	543	Polygalacturonase [Medicago truncatula]	0.955	0.720	0.662	1e-153
356526789	538	PREDICTED: polygalacturonase At1g48100 i	0.958	0.728	0.669	1e-153
255568780	519	polygalacturonase, putative [Ricinus com	0.941	0.741	0.73	1e-152
449450460	505	PREDICTED: polygalacturonase At1g48100-l	0.914	0.740	0.699	1e-150

>gi|118488018|gb|ABK95830.1| unknown [Populus trichocarpa]

 Score =  572 bits (1475), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 290/398 (72%), Positives = 318/398 (79%), Gaps = 17/398 (4%)

Query: 1   MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKN--NKGNTHRK 58
           M GLSFR L F+  IAFLVWS+SF TC ARRG+HWR  R  NS SL+KK   N+GN+ +K
Sbjct: 4   MSGLSFRCLTFMLFIAFLVWSSSFHTCIARRGKHWRESRG-NSASLAKKKGKNQGNSRQK 62

Query: 59  GGHHNYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAK 118
                +HNG  KPKP P                          PP   S+ FNV DFGAK
Sbjct: 63  -----HHNGVSKPKPPPPKAPSLPPPP--------KDDAPAPSPPQKSSTTFNVLDFGAK 109

Query: 119 GNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIA 178
           GNG SDDTKAF+AAWA ACKV AS M+VPAE VFLVGP+SFSGPYCQANI+FQLDGTIIA
Sbjct: 110 GNGKSDDTKAFQAAWAEACKVAASTMIVPAEYVFLVGPISFSGPYCQANIVFQLDGTIIA 169

Query: 179 PTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHN 238
           PT S  WG+GL  WL+FTKL GITIQG+G IDG GSVWWQDYP++DPID+ES+ I+PL N
Sbjct: 170 PTNSNVWGRGLFQWLEFTKLVGITIQGEGTIDGSGSVWWQDYPFEDPIDNESEFIVPL-N 228

Query: 239 NTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVV 298
           NT    PP PIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVV
Sbjct: 229 NTAQQHPPMPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVV 288

Query: 299 HDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHG 358
           HD+  SSPGDSPNTDGIHLQNSKDVLIH+++LACGDDCVSIQTGCSNVY+HNVNCGPGHG
Sbjct: 289 HDMRTSSPGDSPNTDGIHLQNSKDVLIHSTDLACGDDCVSIQTGCSNVYIHNVNCGPGHG 348

Query: 359 ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           ISIG LGKDNTKACVSNITVRDV++H TM GVRIKTWQ
Sbjct: 349 ISIGGLGKDNTKACVSNITVRDVVLHGTMTGVRIKTWQ 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100173|ref|XP_002311773.1| predicted protein [Populus trichocarpa] gi|222851593|gb|EEE89140.1| predicted protein [Populus trichocarpa]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 291/396 (73%), Positives = 326/396 (82%), Gaps = 12/396 (3%)

Query: 1   MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKNNKGNTHRKGG 60
           MRG SFRSLAF+  I FLVWSASF+TC ARRG+HWR  RS N  SL+KK  KG +H    
Sbjct: 4   MRGFSFRSLAFMLFIVFLVWSASFDTCIARRGKHWRQSRS-NPASLAKK--KGKSH-GNS 59

Query: 61  HHNYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGN 120
           HH +H+G  KPK  P         +P      P+       PP   S+ FNV DFGAKGN
Sbjct: 60  HHQHHSGVSKPKAPPHKAPALPPPAPKEKAPKPS-------PPQKGSTTFNVLDFGAKGN 112

Query: 121 GVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPT 180
           G SDDTKAF+AAWAAACKVEAS ++VPAE VFLVGP+SFSGPYCQANI+FQLDGTIIAP+
Sbjct: 113 GKSDDTKAFQAAWAAACKVEASTLIVPAEYVFLVGPISFSGPYCQANIVFQLDGTIIAPS 172

Query: 181 GSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNT 240
            +  WG+GLL WL+FTKL GITIQGKG IDG GSVWWQDYP++DPID ES+LIIPL NNT
Sbjct: 173 NANAWGRGLLQWLEFTKLVGITIQGKGTIDGSGSVWWQDYPFEDPIDSESELIIPL-NNT 231

Query: 241 LPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHD 300
           +   PP PIR+EL+GKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNC+GVVVHD
Sbjct: 232 VQQHPPMPIRNELNGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCVGVVVHD 291

Query: 301 VSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGIS 360
           + VSSPG+SPNTDGIHLQNSKDVLI +++LACGDDCVSIQTGC+NVY+HNVNCGPGHGIS
Sbjct: 292 MRVSSPGNSPNTDGIHLQNSKDVLIRSTDLACGDDCVSIQTGCTNVYIHNVNCGPGHGIS 351

Query: 361 IGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           IG LGKDNTKACVSNITVRDV+MH TM GVR+KTWQ
Sbjct: 352 IGGLGKDNTKACVSNITVRDVVMHGTMTGVRVKTWQ 387

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425577|ref|XP_002266600.1| PREDICTED: polygalacturonase At1g48100 [Vitis vinifera] gi|297739064|emb|CBI28553.3| unnamed protein product [Vitis vinifera]

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 276/396 (69%), Positives = 316/396 (79%), Gaps = 21/396 (5%)

Query: 1   MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKNNKGNTHRKGG 60
           M GLSFR LAF+ L AFLVWS+S  TC+ARRG+HWRH R++ S SLSKK  K +      
Sbjct: 1   MSGLSFRRLAFMLLFAFLVWSSSTGTCHARRGKHWRHSRAA-SASLSKKKAKSHGSGS-- 57

Query: 61  HHNYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGN 120
                                 +KS P AP+ P + V   PP    S  FNV DFGAKG+
Sbjct: 58  -----------------HHHGGSKSKPKAPSPPKQEVTPPPPEKKGSETFNVLDFGAKGD 100

Query: 121 GVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPT 180
           G +DDTKAF++AWA+ACKVEAS +VVP+E VFLVGP+SFSGPYC+ANI+FQLDGTIIAPT
Sbjct: 101 GDTDDTKAFQSAWASACKVEASTIVVPSEYVFLVGPISFSGPYCEANIVFQLDGTIIAPT 160

Query: 181 GSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNT 240
            +K WG GLLWW++FTKL+GITI+G G+IDG+GSVWWQD P+DDP+DDE+KLIIPL N T
Sbjct: 161 NAKAWGSGLLWWIEFTKLRGITIRGNGVIDGKGSVWWQDSPFDDPVDDEAKLIIPL-NRT 219

Query: 241 LPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHD 300
                P PI S+L  KMPS KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNC+GV V++
Sbjct: 220 AKENSPIPINSKLGSKMPSTKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCMGVSVYE 279

Query: 301 VSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGIS 360
           +SVSSPGDS NTDGIHLQNSKDVLIH +NLACGDDCVSIQTGCSNVY+HNVNCGPGHGIS
Sbjct: 280 MSVSSPGDSVNTDGIHLQNSKDVLIHATNLACGDDCVSIQTGCSNVYIHNVNCGPGHGIS 339

Query: 361 IGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           IG LG+D TKACVSNITVRD++MHNTMNGVRIKTWQ
Sbjct: 340 IGGLGRDGTKACVSNITVRDIIMHNTMNGVRIKTWQ 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135969|gb|ADN33828.1| polygalacturonase [Cucumis melo subsp. melo]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 280/401 (69%), Positives = 315/401 (78%), Gaps = 10/401 (2%)

Query: 1   MRGLSFRSLAFLFLIAFLVWSASFETCNAR-RGRH-WRHGRSSNSVSLSKKNNKGNTHRK 58
           M G+SFR L F+F +AFLVWS+S E C+ R R +H WR  R ++    SKK   G  H  
Sbjct: 5   MEGISFRGLTFMFAVAFLVWSSSLEGCHGRVRSKHYWRQNRVASPALYSKK---GKAHSH 61

Query: 59  GGHH--NYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFG 116
           GG H  N+H    K KP+P  K P     P   P  P  P    P    HS +FNV DFG
Sbjct: 62  GGSHKGNHHGSASKTKPRPSHKTPQPLPRPVTKPK-PNIPRSPPPQKGGHSFMFNVLDFG 120

Query: 117 AKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTI 176
           AKG+G +DDTKAF+  W A+CKV AS  +VP++ VFLVGP+SFSGPYCQ +I+FQLDGTI
Sbjct: 121 AKGDGKTDDTKAFQDTWTASCKVAASTFIVPSKYVFLVGPISFSGPYCQPDIVFQLDGTI 180

Query: 177 IAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDY-PYDDPIDDESKLIIP 235
           IAPT  K WGKGLL WL FTKL G+TIQG G+IDGRGSVWWQ+  PYDDPIDDE KL+IP
Sbjct: 181 IAPTDFKVWGKGLLQWLQFTKLMGLTIQGNGVIDGRGSVWWQEISPYDDPIDDEFKLLIP 240

Query: 236 LHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIG 295
           L N+T+  KPP P RSEL GKMP IKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIG
Sbjct: 241 L-NSTVQEKPPAPARSELVGKMPRIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIG 299

Query: 296 VVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP 355
           V+VHD +VSSPGDS NTDGIHLQNSKDVLI++S L+CGDDC+SIQTGCSNVY+HNVNCGP
Sbjct: 300 VLVHDFNVSSPGDSLNTDGIHLQNSKDVLIYSSTLSCGDDCISIQTGCSNVYIHNVNCGP 359

Query: 356 GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           GHGISIGSLGKDNTKACVSNITVRDV+MHNTMNGVRIKTWQ
Sbjct: 360 GHGISIGSLGKDNTKACVSNITVRDVIMHNTMNGVRIKTWQ 400

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567642|ref|XP_003552026.1| PREDICTED: polygalacturonase At1g48100-like [Glycine max]

 Score =  554 bits (1427), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 278/413 (67%), Positives = 316/413 (76%), Gaps = 22/413 (5%)

Query: 1   MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRS-SNSVSLSKKNNKGNTHRKG 59
           M GLSFR   ++ LIAFL+WS +FE C ARRG+HWR  R  S SV   K  N GN H K 
Sbjct: 1   MSGLSFRGFTYMLLIAFLIWSFNFEACIARRGKHWRQSRDVSASVYKKKGKNYGNAHNK- 59

Query: 60  GHHNYHNGKPKPKPK---------PKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHH---- 106
               YH G  K KP          PKP     N   P  P  P+      PPP  +    
Sbjct: 60  ----YHGGGSKSKPPSSHKGTPTLPKPPPQHKNTPSPPYPTPPSDDTPTTPPPKAYNGGG 115

Query: 107 ---SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPY 163
              ++ FNV DFGAKG+G SDDTKAF+ AWA ACK+E+S M+VPA+  F VGP+SFSGPY
Sbjct: 116 HSSATTFNVLDFGAKGDGKSDDTKAFQEAWAEACKIESSTMLVPADYAFFVGPISFSGPY 175

Query: 164 CQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYD 223
           C+ +I+FQLDGTI+APT  K WGKGLL WL+F+KL GITIQG GIIDGRGSVWWQD  YD
Sbjct: 176 CKPSIVFQLDGTIVAPTSPKAWGKGLLQWLEFSKLVGITIQGNGIIDGRGSVWWQDNQYD 235

Query: 224 DPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNS 283
           DPIDDE KLI+PL++      PP PI+SE+ GKMPS+KPTALRFYGSFN TVTGITIQNS
Sbjct: 236 DPIDDEEKLIVPLNHTVGSPSPPLPIQSEMGGKMPSVKPTALRFYGSFNPTVTGITIQNS 295

Query: 284 PQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC 343
           PQCHLKFDNC GV+VHDV++SSPGDSPNTDGIHLQNSKDVLI++S++ACGDDC+SIQTGC
Sbjct: 296 PQCHLKFDNCNGVMVHDVTISSPGDSPNTDGIHLQNSKDVLIYSSSMACGDDCISIQTGC 355

Query: 344 SNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           SN+YVHNVNCGPGHGISIGSLGKDNT+ACVSNITVRDV MHNTMNGVRIKTWQ
Sbjct: 356 SNIYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQ 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434933|ref|XP_004135250.1| PREDICTED: polygalacturonase At1g48100-like [Cucumis sativus]

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 278/401 (69%), Positives = 313/401 (78%), Gaps = 10/401 (2%)

Query: 1   MRGLSFRSLAFLFLIAFLVWSASFETCNAR-RGRH-WRHGRSSNSVSLSKKNNKGNTHRK 58
           M G+SFR L F+  +AFLVWS+S E C+ + R +H WR  R ++    SKK   G  H  
Sbjct: 5   MEGISFRGLTFMLAVAFLVWSSSLEGCHGKVRSKHYWRKNRVASPALYSKK---GKAHSH 61

Query: 59  GGHH--NYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFG 116
           GG H  N+H    K KP+P  K P     P   P  P  P    P    HS +FNV DFG
Sbjct: 62  GGSHKGNHHGSASKTKPRPSHKTPQPLPRPVTKPK-PNIPRSPPPQKEGHSIMFNVLDFG 120

Query: 117 AKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTI 176
           AKG+G +DDTKAF+  W A+CKV AS  +VP++ VFLVGP+SFSGPYCQ +I+FQLDGTI
Sbjct: 121 AKGDGKTDDTKAFQDTWTASCKVAASTFIVPSKYVFLVGPISFSGPYCQPDIVFQLDGTI 180

Query: 177 IAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDY-PYDDPIDDESKLIIP 235
           IAPT  K WGKGLL WL FTKL G+TIQG G+IDGRGSVWWQ+  PYDDPIDDE KL+IP
Sbjct: 181 IAPTDFKVWGKGLLQWLQFTKLMGLTIQGNGVIDGRGSVWWQEISPYDDPIDDEFKLLIP 240

Query: 236 LHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIG 295
           L N+T+  KPP P RSEL GKMP IKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIG
Sbjct: 241 L-NSTVQEKPPPPARSELVGKMPRIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIG 299

Query: 296 VVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP 355
           V+VHD +VSSPGDS NTDGIHLQNSKDVLI++S L+CGDDC+SIQTGCSNVY+HNVNCGP
Sbjct: 300 VLVHDFNVSSPGDSLNTDGIHLQNSKDVLIYSSTLSCGDDCISIQTGCSNVYIHNVNCGP 359

Query: 356 GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           GHGISIGSLGKDNTKACVSNITVRDV MHNTMNGVRIKTWQ
Sbjct: 360 GHGISIGSLGKDNTKACVSNITVRDVTMHNTMNGVRIKTWQ 400

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485855|ref|XP_003613215.1| Polygalacturonase [Medicago truncatula] gi|355514550|gb|AES96173.1| Polygalacturonase [Medicago truncatula]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/418 (66%), Positives = 322/418 (77%), Gaps = 27/418 (6%)

Query: 1   MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKNNK---GNTHR 57
           M G S R   ++ LIAFL+WS++FE C ARRG+H R  R+ +S SL KK  K   GN+H 
Sbjct: 1   MSGFSLRGFTYMLLIAFLIWSSNFECCIARRGKHLRQSRTFSS-SLFKKKGKSYNGNSHN 59

Query: 58  KGGHHNYHNGKPKPKPK----PKPKAPSHNKSPPLAPAVPTKPVYD--VPPPSH----HS 107
           K  H    N KPK  P     P PK+P  +KS P +P + +KP Y   +PPP      HS
Sbjct: 60  KNHHSGGSNSKPKSPPHKSTPPLPKSPPSHKSVPSSPPI-SKPKYSPSIPPPKANNGVHS 118

Query: 108 SVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQAN 167
           + FNV D+GAKG+G +DDTKAF+A WAA CKVEAS MV+PA  +F VGP+SFSGPYC+AN
Sbjct: 119 TFFNVLDYGAKGDGNTDDTKAFQATWAATCKVEASTMVIPANYIFYVGPISFSGPYCKAN 178

Query: 168 IIFQ---------LDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQ 218
           I+FQ         LDGTIIAPT    W    L WL+FTKL+GITIQG G+IDGRGSVWWQ
Sbjct: 179 IVFQANNKVIFCQLDGTIIAPTNPNAWSGVTLQWLEFTKLEGITIQGNGVIDGRGSVWWQ 238

Query: 219 DYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGI 278
           D+PYD+PIDDE KLI+PL+      KPP P+++E+  KMPS KPTALRFYGS+  TVTGI
Sbjct: 239 DFPYDNPIDDEEKLIVPLNQTQ---KPPMPVQNEMGRKMPSNKPTALRFYGSYGPTVTGI 295

Query: 279 TIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS 338
           TIQNSPQCHLKFDNC GV+VHDVS+SSPGDSPNTDGIHLQNSKDVLIH+S LACGDDC+S
Sbjct: 296 TIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKLACGDDCIS 355

Query: 339 IQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           IQTGCSNVYVHNVNCGPGHGISIGSLGKDNT+ACVSNITVRDV +H++MNGVRIKTWQ
Sbjct: 356 IQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNIHDSMNGVRIKTWQ 413

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526789|ref|XP_003531999.1| PREDICTED: polygalacturonase At1g48100 isoform 1 [Glycine max]

 Score =  546 bits (1406), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/412 (66%), Positives = 316/412 (76%), Gaps = 20/412 (4%)

Query: 1   MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKNNKGNTHRKGG 60
           M GLSF+   ++FLIAFL+WS +FE C ARRG+HWR  R   S SL KK  K  ++    
Sbjct: 1   MSGLSFKGFTYMFLIAFLIWSFNFEACIARRGKHWRQSRDV-SASLYKKKGKNYSN---A 56

Query: 61  HHNYHNGKPKPKPK---------PKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHH----- 106
           H+  H G  K KP          PKP     N   P  P  P+      PPP  +     
Sbjct: 57  HNKNHGGGSKSKPPSSHKGTPTLPKPPPQHKNTPSPPYPTPPSDDTPTTPPPKGYNGGGH 116

Query: 107 --SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYC 164
             ++ FNV DFGAKG+G SDDTKAF+ AWA ACKVE+S M+VPA+ VF VGP+SFSGPYC
Sbjct: 117 SPTTTFNVLDFGAKGDGKSDDTKAFQEAWAEACKVESSTMLVPADYVFFVGPISFSGPYC 176

Query: 165 QANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDD 224
           + +I+FQLDGTI+APT    WGKGLL WL+F+KL GITIQG GIIDGRGSVWWQD PYDD
Sbjct: 177 KPSIVFQLDGTIVAPTSPNAWGKGLLQWLEFSKLVGITIQGNGIIDGRGSVWWQDNPYDD 236

Query: 225 PIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP 284
           PIDDE KLI+PL++      PP PI+SE+ GKMPS+KPTALRFYGSFN TVTGITIQNSP
Sbjct: 237 PIDDEEKLIVPLNHTIGSPSPPLPIQSEMGGKMPSVKPTALRFYGSFNPTVTGITIQNSP 296

Query: 285 QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCS 344
           QCHLKFD+C GV+VH+V++SSPGDSPNTDGIHLQNSKDVLI+ S +ACGDDC+SIQTGCS
Sbjct: 297 QCHLKFDSCNGVMVHNVTISSPGDSPNTDGIHLQNSKDVLIYGSTMACGDDCISIQTGCS 356

Query: 345 NVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           NVYVHNVNCGPGHGISIGSLGKDNT+ACVSNITVRDV MHNTMNGVRIKTWQ
Sbjct: 357 NVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQ 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568780|ref|XP_002525361.1| polygalacturonase, putative [Ricinus communis] gi|223535324|gb|EEF36999.1| polygalacturonase, putative [Ricinus communis]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/400 (73%), Positives = 328/400 (82%), Gaps = 15/400 (3%)

Query: 1   MRGLSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKNNKGNTHRKGG 60
           M G+S RSL F+F IAFLVWS+SFETC ARRGRHWRHGR +++   +K+  KG +H    
Sbjct: 1   MTGVSLRSLTFMFFIAFLVWSSSFETCIARRGRHWRHGRGTSASLYNKR--KGKSHGSSS 58

Query: 61  HHNYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPP----PSHHSSVFNVKDFG 116
           +H+ HN   KPKP      PSH          P K   D PP    P   S+ FNV +FG
Sbjct: 59  NHHQHNKGSKPKP------PSHKAPLLPPAPTPPKD--DAPPSSSSPIKGSATFNVLNFG 110

Query: 117 AKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTI 176
           AKG+G +DDTKAF+AAWAAACKVEAS M+VPAE +FLVGP+SFSGPYCQANI+FQL+G I
Sbjct: 111 AKGDGKTDDTKAFQAAWAAACKVEASTMLVPAEYIFLVGPVSFSGPYCQANIVFQLNGKI 170

Query: 177 IAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPL 236
           IAPT S  W KGLLWW++FTKLKGITIQG G IDG GSVWW+DYP DDP DDE+KLIIPL
Sbjct: 171 IAPTNSYVWAKGLLWWIEFTKLKGITIQGTGTIDGSGSVWWEDYPLDDPEDDETKLIIPL 230

Query: 237 HNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGV 296
            NNT+   PP P+RSEL  KMPSIKPTALRFYGSFN TVTGITIQNSPQCHLKFDNCIGV
Sbjct: 231 -NNTVQQHPPMPVRSELGKKMPSIKPTALRFYGSFNATVTGITIQNSPQCHLKFDNCIGV 289

Query: 297 VVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPG 356
           V+HD+++SSPGDSPNTDGIHLQNSKDVLIH+SNLACGDDCVSIQTGC+NVY+HNVNCGPG
Sbjct: 290 VIHDITISSPGDSPNTDGIHLQNSKDVLIHSSNLACGDDCVSIQTGCTNVYIHNVNCGPG 349

Query: 357 HGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           HGISIGSLG+DNTKACVSNITVRDV+MHNTM GVRIKTWQ
Sbjct: 350 HGISIGSLGRDNTKACVSNITVRDVVMHNTMTGVRIKTWQ 389

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450460|ref|XP_004142980.1| PREDICTED: polygalacturonase At1g48100-like [Cucumis sativus]

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 275/393 (69%), Positives = 313/393 (79%), Gaps = 19/393 (4%)

Query: 4   LSFRSLAFLFLIAFLVWSASFETCNARRGRHWRHGRSSNSVSLSKKNNKGNTHRKGGHHN 63
           +S +SL  +  IAFLVWS++FE C ARRG+HWR  R + S SLSKK  KG+    GG  N
Sbjct: 1   MSSKSLTLVVFIAFLVWSSNFEACIARRGKHWRQNRDA-SASLSKK--KGS---HGGSKN 54

Query: 64  YHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVS 123
           +H+G P     PKPK       P   P+            +  S++FNV DFGAKGNG +
Sbjct: 55  HHSGAPPSPLPPKPKEEIVQTPPKKGPS------------AGDSAIFNVLDFGAKGNGET 102

Query: 124 DDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSK 183
           DDTKAFE AWA ACKVE S ++VPA+ VF VGP+SFSGPYCQ +IIFQLDGTIIAPT  +
Sbjct: 103 DDTKAFEDAWAEACKVEGSTVMVPADYVFFVGPISFSGPYCQPDIIFQLDGTIIAPTDHQ 162

Query: 184 DWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPY 243
            WGKGLL W+ FTKL GITI+G GIIDGRGSVWWQD  +D+PIDDE KLIIP+ NNT+  
Sbjct: 163 TWGKGLLQWIQFTKLVGITIRGNGIIDGRGSVWWQDSSFDEPIDDEMKLIIPV-NNTINE 221

Query: 244 KPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSV 303
             PTPI S L GKMPSIKPTALRFYGSFN TVTGITIQNSPQCHLKFDNC+GV+VHD+SV
Sbjct: 222 TKPTPIGSNLEGKMPSIKPTALRFYGSFNATVTGITIQNSPQCHLKFDNCVGVLVHDISV 281

Query: 304 SSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGS 363
           SSPGDS NTDGIHLQNSKDVLIH+++L+CGDDCVSIQTGCSN+Y+HNVNCGPGHGISIGS
Sbjct: 282 SSPGDSLNTDGIHLQNSKDVLIHSTSLSCGDDCVSIQTGCSNIYIHNVNCGPGHGISIGS 341

Query: 364 LGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           LGKD+TKACVSNITVRDV MH+TMNGVRIKTWQ
Sbjct: 342 LGKDHTKACVSNITVRDVTMHDTMNGVRIKTWQ 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2019963	532	AT1G10640 [Arabidopsis thalian	0.953	0.733	0.607	5.9e-128
TAIR|locus:2036581	540	AT1G60590 [Arabidopsis thalian	0.958	0.725	0.591	1.1e-126
TAIR|locus:2222657	435	AT5G14650 [Arabidopsis thalian	0.356	0.335	0.761	1.8e-96
TAIR|locus:2028844	460	AT1G23460 [Arabidopsis thalian	0.330	0.293	0.511	1.6e-57
TAIR|locus:2026795	468	AT1G70500 [Arabidopsis thalian	0.330	0.288	0.511	1.8e-56
TAIR|locus:2088842	470	AT3G26610 [Arabidopsis thalian	0.342	0.297	0.671	7.4e-50
TAIR|locus:2093212	456	AT3G15720 [Arabidopsis thalian	0.332	0.298	0.455	2.3e-48
TAIR|locus:2146370	458	AT5G27530 [Arabidopsis thalian	0.325	0.290	0.458	2e-47
TAIR|locus:2103478	431	ADPG1 [Arabidopsis thaliana (t	0.339	0.322	0.464	2.3e-46
TAIR|locus:2155292	381	AT5G44840 [Arabidopsis thalian	0.320	0.343	0.435	2.3e-46

TAIR|locus:2019963 AT1G10640 [Arabidopsis thaliana (taxid:3702)]

 Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
 Identities = 245/403 (60%), Positives = 279/403 (69%)

Query:     2 RGLSFRSLAFLFLIAFLVWSASFETCNAXXXXXXXXXXXXXXXXXXXXX-----XXGNTH 56
             R LS RS+  + L+A LVWS + ETC A                            GN+H
Sbjct:     5 RSLSLRSITMMILMAVLVWSVTLETCIARRGRHWRHSHRSSSDLSDSLSNKKPKSHGNSH 64

Query:    57 RKGGHHNYHNGXXXXXXXXXXXXXXXXXXXXLAPAVPTKPVYDVPP--PSHHSSVFNVKD 114
                 H+N H+                      +P V   P    PP  P   S VFNV D
Sbjct:    65 HHSSHNNNHHHKSKPKPKPKLKTPPKAHDNN-SPVVSGPPKVQPPPLPPQKGSQVFNVMD 123

Query:   115 FGAKGNGVSDDTXXXXXXXXXXXXXXXSIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174
             FGAKG+G  DDT               S+M+VP E  +LVGP+SFSGPYCQANI+FQLDG
Sbjct:   124 FGAKGDGKCDDTKAFEAAWVAACKIEASVMLVPPEYTYLVGPISFSGPYCQANIVFQLDG 183

Query:   175 TIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQ-DYPYDDPIDDESKLI 233
             TIIAPT SK WGKGL+WW+DFTKLKGI +QGKG+IDGRGS WWQ D P+   ID ++KLI
Sbjct:   184 TIIAPTDSKTWGKGLMWWIDFTKLKGIKVQGKGVIDGRGSGWWQQDSPF---IDSDTKLI 240

Query:   234 IPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNC 293
             +PL NN+    PP PIRSEL  +MPSIKPTALRF GSF V VTGITIQNSPQCHLKFD+C
Sbjct:   241 VPL-NNSANQNPPMPIRSELDERMPSIKPTALRFSGSFGVEVTGITIQNSPQCHLKFDDC 299

Query:   294 IGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNC 353
             +GVVVHD++VSSPGDSPNTDGIHLQN+KDVLIH++ LACGDDC+SIQTGCSNV+VHNVNC
Sbjct:   300 VGVVVHDIAVSSPGDSPNTDGIHLQNTKDVLIHSTTLACGDDCISIQTGCSNVFVHNVNC 359

Query:   354 GPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
             GPGHGISIGSLGK+ TKACVSNITVRDV MHNTM GVRIKTWQ
Sbjct:   360 GPGHGISIGSLGKEGTKACVSNITVRDVAMHNTMTGVRIKTWQ 402

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2036581 AT1G60590 [Arabidopsis thaliana (taxid:3702)]

 Score = 1244 (443.0 bits), Expect = 1.1e-126, P = 1.1e-126
 Identities = 239/404 (59%), Positives = 280/404 (69%)

Query:     4 LSFRSLAFLFLIAFLVWSASFETCNAXXXXX-XXXXXXXXXXXXXXXXXXGNTHRKGGHH 62
             L+ RS+  + L+  LVWSA+ ETC A                          +H    HH
Sbjct:     7 LTLRSITMMTLVTILVWSATLETCIARRGRHWRHHHRSSSSLSDSLSSKKPKSHENNHHH 66

Query:    63 NYHNGXXXXXXXXXXXXXXXXX-XXXLAPAV--PTKPVYDVPP------PSHHSSVFNVK 113
               H                         P V  P  P    PP      P   S  FNV 
Sbjct:    67 MSHKSKPKPKMKTQPPKSNDGSPVVSQPPQVQQPPPPHVQPPPTPLPLQPVEDSQQFNVL 126

Query:   114 DFGAKGNGVSDDTXXXXXXXXXXXXXXXSIMVVPAESVFLVGPMSFSGPYCQANIIFQLD 173
             DFGAKG+G+SDDT               S M++P + +FLVGP+SFSGPYCQANI+FQL+
Sbjct:   127 DFGAKGDGMSDDTQAFEAAWASACKVEASTMIIPPDYIFLVGPISFSGPYCQANIVFQLE 186

Query:   174 GTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQ-DYPYDDPIDDESKL 232
             G I+APT ++ WG GL+WW++FTKL GITIQG G+IDGRG+VWWQ DY  D PIDD+ KL
Sbjct:   187 GMIVAPTDTESWGGGLMWWIEFTKLSGITIQGNGVIDGRGTVWWQQDYLSDYPIDDDFKL 246

Query:   233 IIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDN 292
             I+PL NN++  +PP PIRSEL+ +MPSIKPTALRFYGS +VTVTGITIQNSPQCHLKFDN
Sbjct:   247 IVPL-NNSVQERPPMPIRSELNWRMPSIKPTALRFYGSIDVTVTGITIQNSPQCHLKFDN 305

Query:   293 CIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVN 352
             C+ V+VHDV+VSSPGDSPNTDGIHLQN++DV+IHT+ LACGDDC+SIQTGCSNVYVHNVN
Sbjct:   306 CVKVLVHDVNVSSPGDSPNTDGIHLQNTRDVMIHTTTLACGDDCISIQTGCSNVYVHNVN 365

Query:   353 CGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
             CGPGHGISIGSLGKD+TKACVSNITVRDV+MHNTM GVRIKTWQ
Sbjct:   366 CGPGHGISIGSLGKDSTKACVSNITVRDVVMHNTMTGVRIKTWQ 409

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2222657 AT5G14650 [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 1.8e-96, Sum P(3) = 1.8e-96
 Identities = 112/147 (76%), Positives = 127/147 (86%)

Query:   251 SELSG-KMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDS 309
             +++ G KMP  KPTALRFYGS  VTV+GITIQNSPQ HLKFDNCI + V D + SSPGDS
Sbjct:   159 NDMMGTKMPRTKPTALRFYGSNGVTVSGITIQNSPQTHLKFDNCISIQVSDFTTSSPGDS 218

Query:   310 PNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNT 369
             PNTDGIHLQNS+D +I+ S LACGDDC+SIQTGCSN+ +H+V+CGPGHGISIG LGKDNT
Sbjct:   219 PNTDGIHLQNSQDAVIYRSTLACGDDCISIQTGCSNINIHDVDCGPGHGISIGGLGKDNT 278

Query:   370 KACVSNITVRDVMMHNTMNGVRIKTWQ 396
             KACVSNITVRDV MH T NGVRIK+WQ
Sbjct:   279 KACVSNITVRDVTMHETTNGVRIKSWQ 305

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2028844 AT1G23460 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 1.6e-57, Sum P(2) = 1.6e-57
 Identities = 69/135 (51%), Positives = 87/135 (64%)

Query:   262 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSK 321
             PTAL    S  V V+G+TIQNS Q +        V V  V VSSPGDSPNTDGIH+  S 
Sbjct:   190 PTALTIESSSGVKVSGLTIQNSQQMNFIIARSDSVRVSKVMVSSPGDSPNTDGIHITGST 249

Query:   322 DVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDV 381
             +V++    +  GDDCVSI    SN+ + N+ CGPGHGISIGSLGKDNT   V+ + +   
Sbjct:   250 NVILQDCKIGTGDDCVSIVNASSNIKMKNIYCGPGHGISIGSLGKDNTTGIVTQVVLDTA 309

Query:   382 MMHNTMNGVRIKTWQ 396
             ++  T NG+RIKT+Q
Sbjct:   310 LLRETTNGLRIKTYQ 324

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
 Identities = 69/135 (51%), Positives = 90/135 (66%)

Query:   262 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSK 321
             PTAL  Y S NV V G+TI+NS Q HL       V +  V V+SPGDSPNTDGIH+  S 
Sbjct:   190 PTALTIYSSSNVYVRGLTIRNSQQMHLIIQRSTTVRISRVMVTSPGDSPNTDGIHITAST 249

Query:   322 DVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDV 381
             DV++  S ++ GDDCVSI  G + + +  + CGPGHGISIGSLG+ ++K  V+ + +   
Sbjct:   250 DVVVQDSKISTGDDCVSIVNGSAKIKMKRIYCGPGHGISIGSLGQGHSKGTVTAVVLETA 309

Query:   382 MMHNTMNGVRIKTWQ 396
              + NT NG+RIKTWQ
Sbjct:   310 FLKNTTNGLRIKTWQ 324

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2088842 AT3G26610 [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 94/140 (67%), Positives = 117/140 (83%)

Query:   257 MPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIH 316
             +P +KPTALRFY S NVTV  I+I NSP CHLKFD+  GV V+++++SSP +SPNTDGIH
Sbjct:   188 IPPMKPTALRFYSSNNVTVRDISIVNSPLCHLKFDDSDGVKVNNITISSPENSPNTDGIH 247

Query:   317 LQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNI 376
             LQN+++V I  SN+ACGDDCVSIQTG SNV++H++NCGPGHGISIG LGKD + ACVS+I
Sbjct:   248 LQNTRNVEIQHSNIACGDDCVSIQTGSSNVHIHHINCGPGHGISIGGLGKDKSVACVSDI 307

Query:   377 TVRDVMMHNTMNGVRIKTWQ 396
              V D+ + NT+ GVRIKTWQ
Sbjct:   308 IVEDISIQNTLAGVRIKTWQ 327

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2093212 AT3G15720 [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
 Identities = 62/136 (45%), Positives = 90/136 (66%)

Query:   261 KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNS 320
             +PTAL+F    N+ ++G+T  +SP  H+    C  V +  + +++P  SPNTDGI +  S
Sbjct:   137 RPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGAS 196

Query:   321 KDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRD 380
              +V+I    +A GDDC++I +G SN+++  ++CGPGHGISIGSLGKD   A V N+ V++
Sbjct:   197 SNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQN 256

Query:   381 VMMHNTMNGVRIKTWQ 396
                  TMNG RIKTWQ
Sbjct:   257 CNFRGTMNGARIKTWQ 272

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2146370 AT5G27530 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
 Identities = 61/133 (45%), Positives = 84/133 (63%)

Query:   264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDV 323
             AL      N+T+ GIT  +SP+ H+   NC  V +  +++ +P +SPNTDGI +  S +V
Sbjct:   165 ALHICNCNNLTINGITSIDSPKSHISIKNCHYVAISKINILAPENSPNTDGIDISYSTNV 224

Query:   324 LIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMM 383
              I  S +  GDDC++I TG S++ +  VNCGPGHGIS+GSLG D   A VS++ V     
Sbjct:   225 NIFDSTIQTGDDCIAINTGSSSINITQVNCGPGHGISVGSLGADGENAAVSDVYVTQCTF 284

Query:   384 HNTMNGVRIKTWQ 396
             + T NG RIKTWQ
Sbjct:   285 NKTTNGARIKTWQ 297

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 65/140 (46%), Positives = 93/140 (66%)

Query:   258 PSIK-PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIH 316
             P  K PTAL  Y   N+ V  + ++N+ Q  +  + C  V V +V +++PGDSPNTDGIH
Sbjct:   187 PCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIH 246

Query:   317 LQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNI 376
             + N++++ +  S++  GDDC+SI+ G  N+ + ++ CGPGHGISIGSLG DN+KA VS I
Sbjct:   247 ITNTQNIRVSNSDIGTGDDCISIEDGTQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGI 306

Query:   377 TVRDVMMHNTMNGVRIKTWQ 396
              V       + NGVRIKT+Q
Sbjct:   307 NVDGAKFSESDNGVRIKTYQ 326

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS;IDA

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

GO:0009830 "cell wall modification involved in abscission" evidence=RCA;TAS

GO:0009901 "anther dehiscence" evidence=IMP

GO:0010047 "fruit dehiscence" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2155292 AT5G44840 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 2.3e-46, Sum P(2) = 2.3e-46
 Identities = 57/131 (43%), Positives = 83/131 (63%)

Query:   265 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVL 324
             L F    ++ +TGIT  NSP+ H+    C  V +  + + +P DSPNTDGI++  S DV 
Sbjct:   137 LHFQRCNDLMITGITSFNSPKNHISISECKRVKITKIKLVAPHDSPNTDGINISESSDVD 196

Query:   325 IHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMH 384
             I+ + +  GDDCV+I +G  N+ +  +NCGPGHGIS+GS+G+D  ++ V N+ V +    
Sbjct:   197 IYDTVIGTGDDCVAINSGSMNINIARMNCGPGHGISVGSVGRDGEESIVENVQVTNCTFI 256

Query:   385 NTMNGVRIKTW 395
              T NG RIKTW
Sbjct:   257 RTDNGARIKTW 267

GO:0004650 "polygalacturonase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
PLN02793	443	PLN02793, PLN02793, Probable polygalacturonase	2e-69
PLN02188	404	PLN02188, PLN02188, polygalacturonase/glycoside hy	2e-64
PLN02218	431	PLN02218, PLN02218, polygalacturonase ADPG	6e-62
PLN03010	409	PLN03010, PLN03010, polygalacturonase	1e-61
PLN03003	456	PLN03003, PLN03003, Probable polygalacturonase At3	9e-59
pfam00295	325	pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam	5e-57
PLN02155	394	PLN02155, PLN02155, polygalacturonase	5e-51
COG5434	542	COG5434, PGU1, Endopygalactorunase [Cell envelope	5e-25
pfam12708	222	pfam12708, Pectate_lyase_3, Pectate lyase superfam	2e-05

>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase

 Score =  225 bits (575), Expect = 2e-69
 Identities = 120/292 (41%), Positives = 161/292 (55%), Gaps = 36/292 (12%)

Query: 109 VFNVKDFGAKGNGVSDDTKAFEAAWAAAC--KVEASIMVVPAESVFLVGPMSFSGPYCQA 166
           V +V DFGAKG+GV+DDT+AF+ AW  AC  KV+  I V+PA   FLV P+   GP C+A
Sbjct: 52  VLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRI-VIPAGYTFLVRPIDLGGP-CKA 109

Query: 167 NIIFQLDGTIIAPTGSKDWGKGL--LWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDD 224
            +  Q+ GTIIAP     W KGL    WL F  +  +T++G G ++G G  WW       
Sbjct: 110 KLTLQISGTIIAPKDPDVW-KGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWA------ 162

Query: 225 PIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP 284
                          +       P R           PTA+ F+   ++ V  + + +S 
Sbjct: 163 --------------QSCKINHTNPCRH---------APTAITFHKCKDLRVENLNVIDSQ 199

Query: 285 QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCS 344
           Q H+ F NC  V +  + V +P  SPNTDGIH+  S+ V+I  S +  GDDC+SI    S
Sbjct: 200 QMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSS 259

Query: 345 NVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
            + + N+ CGPGHGISIGSLGK N+ + V +ITV    + NT NGVRIKTWQ
Sbjct: 260 RIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQ 311

Length = 443

>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein

 Score =  211 bits (538), Expect = 2e-64
 Identities = 104/293 (35%), Positives = 151/293 (51%), Gaps = 36/293 (12%)

Query: 105 HHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYC 164
             + +F+V+ FGA+ NG +DD+KAF AAW AAC    ++ ++     + +GP+ F GP  
Sbjct: 32  SSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCT 91

Query: 165 QANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDD 224
             +    L  T+ A T    +G G   W++F  + G+T+ G G  DG+G+  W   P++ 
Sbjct: 92  NVS---SLTFTLKAATDLSRYGSGN-DWIEFGWVNGLTLTGGGTFDGQGAAAW---PFNK 144

Query: 225 -PIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNS 283
            PI  + KL+                            PT+++F    N  V GIT  NS
Sbjct: 145 CPIRKDCKLL----------------------------PTSVKFVNMNNTVVRGITSVNS 176

Query: 284 PQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC 343
              H+    C       + +S+P DSPNTDGIH++ S  V I  S +  GDDC+SI  G 
Sbjct: 177 KFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGN 236

Query: 344 SNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           S V +  + CGPGHGIS+GSLG+   +  V+ + VRD     T NG+RIKTW 
Sbjct: 237 SQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWA 289

Length = 404

>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG

 Score =  205 bits (523), Expect = 6e-62
 Identities = 108/292 (36%), Positives = 166/292 (56%), Gaps = 34/292 (11%)

Query: 108 SVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASI-MVVPAESVFLVGPMSFSGPYCQA 166
           +  +V DFGAKG+G +DDT+AF  AW  AC    ++ ++VP  + +L+  +  +GP C++
Sbjct: 66  TTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGP-CKS 124

Query: 167 NIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQG--KGIIDGRGSVWWQDYPYDD 224
               Q+ GT+ A     D+ K +  W+ F  +  +++ G   G++DG G  WWQ+    +
Sbjct: 125 IRTVQIFGTLSASQKRSDY-KDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRN 183

Query: 225 PIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP 284
                              KP T              PTAL FY S ++ V  + ++N+ 
Sbjct: 184 KA-----------------KPCTK------------APTALTFYNSKSLIVKNLRVRNAQ 214

Query: 285 QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCS 344
           Q  +  + C  V V +V V++P DSPNTDGIH+ N++++ +  S +  GDDC+SI++G  
Sbjct: 215 QIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQ 274

Query: 345 NVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           NV ++++ CGPGHGISIGSLG DN+KA VS +TV    +  T NGVRIKT+Q
Sbjct: 275 NVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ 326

Length = 431

>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase

 Score =  204 bits (519), Expect = 1e-61
 Identities = 104/290 (35%), Positives = 149/290 (51%), Gaps = 48/290 (16%)

Query: 110 FNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASI--MVVPAESVFLVGPMSFSGPYCQAN 167
           +NV  FGAKG+G +DD+ AF  AW A C  E +I  +++P+   +L+ P+ F GP    +
Sbjct: 47  YNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTS 106

Query: 168 IIFQLDGTIIAPTGSKDWGKGL-LWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPI 226
           I  QLDG I+AP+    W       W+ F+ + G+ I G G IDGRGS +W+        
Sbjct: 107 IKVQLDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-------- 158

Query: 227 DDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQC 286
                                                AL      N+T+ GIT  +SP+ 
Sbjct: 159 -------------------------------------ALHISKCDNLTINGITSIDSPKN 181

Query: 287 HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNV 346
           H+    C  V +  +++ +P  SPNTDGI +  S ++ I  S +  GDDC++I +G SN+
Sbjct: 182 HISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNI 241

Query: 347 YVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
            +  +NCGPGHGIS+GSLG D   A VS++ V     + T NG RIKTWQ
Sbjct: 242 NITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQ 291

Length = 409

>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720

 Score =  197 bits (503), Expect = 9e-59
 Identities = 105/291 (36%), Positives = 157/291 (53%), Gaps = 40/291 (13%)

Query: 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEAS-IMVVPAESVFLVGPMSFSGPYCQ 165
           S+  +V  FGA G+GV+DD++AF  AW A C        VVPA   F++ P+ F G    
Sbjct: 21  SNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKS 80

Query: 166 ANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDP 225
             +  Q+ G ++AP+   +W      W+ FT ++G+ I+G G I+G+GS WW+       
Sbjct: 81  TPVFVQMLGKLVAPS-KGNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWE------- 132

Query: 226 IDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQ 285
                      H  +                    +PTAL+F    N+ ++G+T  +SP 
Sbjct: 133 -----------HKGS--------------------RPTALKFRSCNNLRLSGLTHLDSPM 161

Query: 286 CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSN 345
            H+    C  V +  + +++P  SPNTDGI +  S +V+I    +A GDDC++I +G SN
Sbjct: 162 AHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSN 221

Query: 346 VYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           +++  ++CGPGHGISIGSLGKD   A V N+ V++     TMNG RIKTWQ
Sbjct: 222 IHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQ 272

Length = 456

>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28

 Score =  189 bits (483), Expect = 5e-57
 Identities = 89/256 (34%), Positives = 130/256 (50%), Gaps = 36/256 (14%)

Query: 141 ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKG 200
            S + VP    FL+G  S SGP C++     + GT  A    K+  +G L W+  TK+  
Sbjct: 6   LSTISVPK-GGFLLGLTSLSGP-CKSGATVTIQGTTTAD--YKES-QGKLIWITGTKITN 60

Query: 201 ITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSI 260
           +   G G IDG+G  WW          D S                   +     K    
Sbjct: 61  LGASGGGTIDGQGPAWW----------DGS------------------CKKSNGCK---K 89

Query: 261 KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNS 320
           KP  LRF+   N T+TG+ I+NSP  H   ++C  +   D+++ +P  SPNTDGI + +S
Sbjct: 90  KPKFLRFHKLDNSTITGLNIKNSPVFHFSVEDCKNLTASDITIDAPAGSPNTDGIDIGSS 149

Query: 321 KDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRD 380
             V I  + +  GDDC++I +G  N+ + N+ CG GHGISIGS+G  + +  VS +TV++
Sbjct: 150 SGVTISNTTIGTGDDCIAIGSGSGNILITNITCGGGHGISIGSVGGRSDENTVSGVTVKN 209

Query: 381 VMMHNTMNGVRIKTWQ 396
             +  + NGVRIKTW 
Sbjct: 210 CTVTGSDNGVRIKTWP 225

Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. Length = 325

>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase

 Score =  176 bits (446), Expect = 5e-51
 Identities = 102/289 (35%), Positives = 148/289 (51%), Gaps = 35/289 (12%)

Query: 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQA 166
           S+VFNV  FGAK +GV+D T AF  AW  AC   +S  VV     FL+  ++F GP C++
Sbjct: 25  SNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGP-CKS 83

Query: 167 NIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPI 226
            I FQ+ GT++AP   + +G    W L F K+   ++ G G  D R + +W         
Sbjct: 84  KITFQVAGTVVAPEDYRTFGNSGYWIL-FNKVNRFSLVG-GTFDARANGFWS-------- 133

Query: 227 DDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQC 286
                                  R       P ++  ++ F  + +V ++G+   NS   
Sbjct: 134 ----------------------CRKSGQNCPPGVR--SISFNSAKDVIISGVKSMNSQVS 169

Query: 287 HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNV 346
           H+  + C  VVV +V + +PG+SPNTDG H+Q S  V    S +  GDDCV+I  G  N 
Sbjct: 170 HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNF 229

Query: 347 YVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTW 395
            +  + CGPGHG+SIGSL K+  +  V N+TV   +   + NGVRIK+W
Sbjct: 230 LITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSW 278

Length = 394

>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane]

 Score =  106 bits (267), Expect = 5e-25
 Identities = 74/320 (23%), Positives = 124/320 (38%), Gaps = 54/320 (16%)

Query: 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQA 166
            + F+V D GA G+G +D+T A +AA  A        +++PA   +L GP+     + ++
Sbjct: 80  DTAFSVSDDGAVGDGATDNTAAIQAAIDACASAGGGTVLLPA-GTYLSGPL-----FLKS 133

Query: 167 NIIFQLD-GTIIAPTGSKDWGKGLLWWLDFTKL----------KGITIQGKGIIDGRGS- 214
           N+   L  G  +    S +      +   F                 I G+G+ DG+   
Sbjct: 134 NVTLHLAEGATL--LASSNPKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADL 191

Query: 215 -VWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMP--------SIKPTAL 265
            +        +  +   K        T+            SG            ++P  +
Sbjct: 192 LIAG---NSSNRKEIWGK-------GTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTV 241

Query: 266 RFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLI 325
              G  NV + G+ I+NSP   +   +C  +   ++++ +     NTDG    +  +VLI
Sbjct: 242 VLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLI 300

Query: 326 HTSNLACGDDCVSIQTG-----------CSNVYVHNVNCGPGHGISIGSLGKDNTKACVS 374
                  GDDC++I++G             N+ + N     GHG  +           V 
Sbjct: 301 EGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGG---VQ 357

Query: 375 NITVRDVMMHNTMNGVRIKT 394
           NITV D +M NT  G+RIKT
Sbjct: 358 NITVEDCVMDNTDRGLRIKT 377

Length = 542

>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 12/69 (17%)

Query: 109 VFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANI 168
             NVKDFGAKG+GV+DDT A + A  A+     +++  P             G Y  ++ 
Sbjct: 1   FRNVKDFGAKGDGVTDDTAAIQKAICASATTGGAVVYFPP------------GTYLVSSP 48

Query: 169 IFQLDGTII 177
           I    GT +
Sbjct: 49  IILYSGTTL 57

This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
PLN02793	443	Probable polygalacturonase	100.0
PLN02218	431	polygalacturonase ADPG	100.0
PLN03003	456	Probable polygalacturonase At3g15720	100.0
PLN02155	394	polygalacturonase	100.0
PLN03010	409	polygalacturonase	100.0
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	100.0
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	100.0
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	100.0
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	99.91
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	99.88
PLN02793	443	Probable polygalacturonase	99.67
PLN02218	431	polygalacturonase ADPG	99.62
PLN02188	404	polygalacturonase/glycoside hydrolase family prote	99.62
PLN03010	409	polygalacturonase	99.6
PLN03003	456	Probable polygalacturonase At3g15720	99.6
PLN02155	394	polygalacturonase	99.56
PF00295	326	Glyco_hydro_28: Glycosyl hydrolases family 28; Int	99.55
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	99.52
PF03718	582	Glyco_hydro_49: Glycosyl hydrolase family 49; Inte	99.48
COG5434	542	PGU1 Endopygalactorunase [Cell envelope biogenesis	99.25
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	98.72
PF12541	277	DUF3737: Protein of unknown function (DUF3737) ; I	98.68
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	98.64
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	98.43
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	98.41
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	98.35
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	98.3
COG3866	345	PelB Pectate lyase [Carbohydrate transport and met	98.26
smart00656	190	Amb_all Amb_all domain.	98.22
PF07602	246	DUF1565: Protein of unknown function (DUF1565); In	98.11
TIGR03808	455	RR_plus_rpt_1 twin-arg-translocated uncharacterize	98.11
PLN02634	359	probable pectinesterase	98.04
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	97.98
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	97.93
PLN02304	379	probable pectinesterase	97.8
PRK10123	464	wcaM putative colanic acid biosynthesis protein; P	97.78
PLN02682	369	pectinesterase family protein	97.64
PLN02480	343	Probable pectinesterase	97.62
PRK10531	422	acyl-CoA thioesterase; Provisional	97.58
PF03718	582	Glyco_hydro_49: Glycosyl hydrolase family 49; Inte	97.56
PLN02708	553	Probable pectinesterase/pectinesterase inhibitor	97.46
smart00656	190	Amb_all Amb_all domain.	97.45
PLN02773	317	pectinesterase	97.39
PLN02506	537	putative pectinesterase/pectinesterase inhibitor	97.35
PF12541	277	DUF3737: Protein of unknown function (DUF3737) ; I	97.35
PLN02468	565	putative pectinesterase/pectinesterase inhibitor	97.33
PLN02301	548	pectinesterase/pectinesterase inhibitor	97.33
PLN02665	366	pectinesterase family protein	97.32
PLN02488	509	probable pectinesterase/pectinesterase inhibitor	97.3
PLN02432	293	putative pectinesterase	97.29
PLN02313	587	Pectinesterase/pectinesterase inhibitor	97.28
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	97.26
PLN02713	566	Probable pectinesterase/pectinesterase inhibitor	97.25
PLN02416	541	probable pectinesterase/pectinesterase inhibitor	97.23
PLN03043	538	Probable pectinesterase/pectinesterase inhibitor;	97.23
PLN02170	529	probable pectinesterase/pectinesterase inhibitor	97.22
PLN02217	670	probable pectinesterase/pectinesterase inhibitor	97.2
PLN02933	530	Probable pectinesterase/pectinesterase inhibitor	97.19
PLN02745	596	Putative pectinesterase/pectinesterase inhibitor	97.19
PLN02197	588	pectinesterase	97.19
PF00544	200	Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe	97.17
PLN02497	331	probable pectinesterase	97.17
PLN02201	520	probable pectinesterase/pectinesterase inhibitor	97.15
PF01095	298	Pectinesterase: Pectinesterase; InterPro: IPR00007	97.13
PLN02995	539	Probable pectinesterase/pectinesterase inhibitor	97.12
PLN02176	340	putative pectinesterase	97.11
PLN02314	586	pectinesterase	97.08
PLN02916	502	pectinesterase family protein	96.98
PLN02484	587	probable pectinesterase/pectinesterase inhibitor	96.97
PLN02671	359	pectinesterase	96.9
PLN02990	572	Probable pectinesterase/pectinesterase inhibitor	96.7
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	96.64
PF12218	67	End_N_terminal: N terminal extension of bacterioph	96.57
PF01696	386	Adeno_E1B_55K: Adenovirus EB1 55K protein / large	96.34
PF08480	198	Disaggr_assoc: Disaggregatase related; InterPro: I	95.33
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	94.46
TIGR03804	44	para_beta_helix parallel beta-helix repeat (two co	94.06
COG4677	405	PemB Pectin methylesterase [Carbohydrate transport	93.69
PLN02773	317	pectinesterase	92.63
PLN02480	343	Probable pectinesterase	92.49
COG3420	408	NosD Nitrous oxidase accessory protein [Inorganic	92.13
PF14592	425	Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF	90.72
TIGR03804	44	para_beta_helix parallel beta-helix repeat (two co	90.49
PF01095	298	Pectinesterase: Pectinesterase; InterPro: IPR00007	89.21
PF01690	465	PLRV_ORF5: Potato leaf roll virus readthrough prot	88.94
PLN02176	340	putative pectinesterase	88.59
PLN02708	553	Probable pectinesterase/pectinesterase inhibitor	88.27
PF08480	198	Disaggr_assoc: Disaggregatase related; InterPro: I	87.21
PLN02713	566	Probable pectinesterase/pectinesterase inhibitor	87.18
PLN02506	537	putative pectinesterase/pectinesterase inhibitor	87.14
PF07602	246	DUF1565: Protein of unknown function (DUF1565); In	86.8
PLN02170	529	probable pectinesterase/pectinesterase inhibitor	86.13
PLN02416	541	probable pectinesterase/pectinesterase inhibitor	85.87
PLN02916	502	pectinesterase family protein	85.87
PLN02301	548	pectinesterase/pectinesterase inhibitor	85.7
PLN03043	538	Probable pectinesterase/pectinesterase inhibitor;	85.58
PLN02201	520	probable pectinesterase/pectinesterase inhibitor	85.54
PLN02468	565	putative pectinesterase/pectinesterase inhibitor	85.42
PLN02665	366	pectinesterase family protein	84.95
PLN02933	530	Probable pectinesterase/pectinesterase inhibitor	84.75
PLN02488	509	probable pectinesterase/pectinesterase inhibitor	84.73
PRK10781	133	rcsF outer membrane lipoprotein; Reviewed	84.65
PLN02745	596	Putative pectinesterase/pectinesterase inhibitor	84.63
PF03211	215	Pectate_lyase: Pectate lyase; InterPro: IPR004898	84.34
PLN02671	359	pectinesterase	84.32
PLN02217	670	probable pectinesterase/pectinesterase inhibitor	84.08
PLN02197	588	pectinesterase	84.01
PLN02314	586	pectinesterase	83.88
PLN02698	497	Probable pectinesterase/pectinesterase inhibitor	83.7
PF01690	465	PLRV_ORF5: Potato leaf roll virus readthrough prot	83.4
PLN02313	587	Pectinesterase/pectinesterase inhibitor	83.26
PLN02990	572	Probable pectinesterase/pectinesterase inhibitor	82.93
PLN02484	587	probable pectinesterase/pectinesterase inhibitor	82.86
PRK10531	422	acyl-CoA thioesterase; Provisional	82.84
PRK09752	1250	adhesin; Provisional	82.77
PLN02432	293	putative pectinesterase	82.69
PRK13855	376	type IV secretion system protein VirB10; Provision	81.98
PRK10123	464	wcaM putative colanic acid biosynthesis protein; P	81.95
PLN02698	497	Probable pectinesterase/pectinesterase inhibitor	81.87
PLN02995	539	Probable pectinesterase/pectinesterase inhibitor	81.86
PHA01732	94	proline-rich protein	81.39

>PLN02793 Probable polygalacturonase

Probab=100.00  E-value=1.7e-62  Score=503.60  Aligned_cols=273  Identities=41%  Similarity=0.735  Sum_probs=249.6

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhh-cCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcc
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD  184 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~-~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~  184 (409)
                      ..++|+|+||||+|||++|||+|||+||++||. .+|++|+||+|.+|+++||.|.|| |+++++|+++|+|+++.+...
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gp-cks~vtL~l~g~l~~~~d~~~  127 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGP-CKAKLTLQISGTIIAPKDPDV  127 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCc-cCCCeEEEEEEEEEccCChHH
Confidence            348999999999999999999999999997665 468999999997799999999998 999999999999999999999


Q ss_pred             cCC-CceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCce
Q 015319          185 WGK-GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPT  263 (409)
Q Consensus       185 ~~~-g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~  263 (409)
                      |.. ....||.+.+++||+|+|+|+|||+|+.||.......                          .   ......||+
T Consensus       128 w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~--------------------------~---~~~~~~rP~  178 (443)
T PLN02793        128 WKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKIN--------------------------H---TNPCRHAPT  178 (443)
T ss_pred             ccCCCCceEEEEecCceEEEEeceEEECCCccccccccccc--------------------------C---CCCccCCce
Confidence            974 3467999999999999999999999999996521000                          0   001124899


Q ss_pred             eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCc
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC  343 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~  343 (409)
                      +|.|.+|+|++|++++++|+++|++++..|++|+|++++|.++..++|+||||+++|+||+|+||+|.++||||++++++
T Consensus       179 ~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s  258 (443)
T PLN02793        179 AITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNS  258 (443)
T ss_pred             EEEEEeeccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCc
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             eeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          344 SNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       344 ~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      +||+|+||+|.++|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||||+|++|+|+||..+
T Consensus       259 ~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~  323 (443)
T PLN02793        259 SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQ  323 (443)
T ss_pred             CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEE
Confidence            99999999999999999999999877889999999999999999999999999999999999764

>PLN02218 polygalacturonase ADPG

Probab=100.00  E-value=4.5e-62  Score=498.58  Aligned_cols=271  Identities=39%  Similarity=0.750  Sum_probs=247.7

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhhc-CCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcc
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKV-EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD  184 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~-gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~  184 (409)
                      .+++|||+||||+|||++|||+|||+||++||.. |+++|+||+|.+|+++++.|.|| |+++++|+++|+|+++++..+
T Consensus        64 ~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp-~ks~~~l~l~g~L~~s~d~~~  142 (431)
T PLN02218         64 TPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGP-CKSIRTVQIFGTLSASQKRSD  142 (431)
T ss_pred             CCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCc-cCCceEEEEEEEEEeCCChhh
Confidence            4579999999999999999999999999776755 56799999997799999999998 999999999999999999988


Q ss_pred             cCCCceeeEEEecccCeeeeec--eEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCC-CCC
Q 015319          185 WGKGLLWWLDFTKLKGITIQGK--GIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMP-SIK  261 (409)
Q Consensus       185 ~~~g~~~~i~~~~~~nVtI~G~--G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r  261 (409)
                      |.. ...||.|.+++||+|+|+  |+|||+|+.||.......                              ...+ ..|
T Consensus       143 y~~-~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~------------------------------~~~~~~~r  191 (431)
T PLN02218        143 YKD-ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRN------------------------------KAKPCTKA  191 (431)
T ss_pred             ccc-cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccC------------------------------CcCccCcC
Confidence            853 457999999999999996  999999999997531000                              0001 248


Q ss_pred             ceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCC
Q 015319          262 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQT  341 (409)
Q Consensus       262 p~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~s  341 (409)
                      |+++.|.+|+|++|+|++++|+++|++++..|++|+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||+|++
T Consensus       192 P~~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIks  271 (431)
T PLN02218        192 PTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIES  271 (431)
T ss_pred             CEEEEEEccccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecC
Confidence            99999999999999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             CceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          342 GCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       342 g~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      |++||+|+||+|.++|||+|||+|++...+.|+||+|+||+|.++.+|+|||||+|++|+|+||+.+
T Consensus       272 gs~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~  338 (431)
T PLN02218        272 GSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQ  338 (431)
T ss_pred             CCceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEE
Confidence            9999999999999999999999998877789999999999999999999999999999999999754

>PLN03003 Probable polygalacturonase At3g15720

Probab=100.00  E-value=1e-60  Score=488.08  Aligned_cols=263  Identities=40%  Similarity=0.791  Sum_probs=245.0

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhh-cCCcEEEECCceEEEeCCcccCCCcccc-ceEEEecceEEcCCCCc
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQA-NIIFQLDGTIIAPTGSK  183 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~-~gg~~v~vP~G~~y~~~~i~l~g~~~~s-~~~l~l~Gtl~~~~~~~  183 (409)
                      .+.+|||++|||+|||++|||+|||+||++||. .++++|+||+|.+|++++|.|.|| |++ .+.++++|+|+++.. .
T Consensus        20 ~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gp-ck~~~~~~~i~G~i~ap~~-~   97 (456)
T PLN03003         20 SSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGS-CKSTPVFVQMLGKLVAPSK-G   97 (456)
T ss_pred             eeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCC-ccCcceeeccCceEecCcc-c
Confidence            557899999999999999999999999999886 478999999998899999999998 776 488899999998764 4


Q ss_pred             ccCCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCce
Q 015319          184 DWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPT  263 (409)
Q Consensus       184 ~~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~  263 (409)
                      .|......||.|.+++|++|+|.|+|||+|+.||...                                      ..||+
T Consensus        98 ~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~--------------------------------------~~rP~  139 (456)
T PLN03003         98 NWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK--------------------------------------GSRPT  139 (456)
T ss_pred             cccCCCcceEEEEcccceEEeccceEeCCchhhhhcc--------------------------------------cCCce
Confidence            6866567899999999999999999999999999642                                      13899


Q ss_pred             eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCc
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC  343 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~  343 (409)
                      +++|.+|+|++|+|++++|+++|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||++++|+
T Consensus       140 ~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs  219 (456)
T PLN03003        140 ALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGT  219 (456)
T ss_pred             EEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCC
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             eeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          344 SNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       344 ~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      +||+|+||+|.++|||+|||+|+++..+.|+||+|+||+|.++.+|+|||||+|++|+|+||..+
T Consensus       220 ~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~  284 (456)
T PLN03003        220 SNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFN  284 (456)
T ss_pred             ccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEE
Confidence            99999999999999999999999877788999999999999999999999999999999998754

>PLN02155 polygalacturonase

Probab=100.00  E-value=1e-59  Score=476.34  Aligned_cols=267  Identities=37%  Similarity=0.707  Sum_probs=243.3

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhh-cCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcc
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD  184 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~-~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~  184 (409)
                      .+++|||+||||+|||++|||+|||+||++||. .+|++|+||+| .|++++|.|.|| |+|+++|+|+|+|+++.++..
T Consensus        24 ~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G-~yl~g~i~l~gp-cksnv~l~l~G~l~~~~d~~~  101 (394)
T PLN02155         24 ASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTG-TFLLKVITFGGP-CKSKITFQVAGTVVAPEDYRT  101 (394)
T ss_pred             CCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCC-cEEEEEEEEccc-CCCCceEEEeeEEECcccccc
Confidence            457999999999999999999999999975554 57899999999 899999999999 999999999999999998877


Q ss_pred             cCCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCcee
Q 015319          185 WGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTA  264 (409)
Q Consensus       185 ~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~  264 (409)
                      |.. ...|+.|.+++|++|+| |+|||+|+.||....    ..                            .....+|++
T Consensus       102 ~~~-~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~----~~----------------------------~~~~~~p~~  147 (394)
T PLN02155        102 FGN-SGYWILFNKVNRFSLVG-GTFDARANGFWSCRK----SG----------------------------QNCPPGVRS  147 (394)
T ss_pred             ccc-cceeEEEECcCCCEEEc-cEEecCceeEEEccc----CC----------------------------CCCCCcccc
Confidence            753 24699999999999999 999999999996531    00                            001126789


Q ss_pred             EEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCce
Q 015319          265 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCS  344 (409)
Q Consensus       265 i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~  344 (409)
                      +.|..|+|++|++++++|+++|++++..|++|+|++++|.++.+++|+||||+.+|+||+|+||+|.+|||||+++++++
T Consensus       148 i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~  227 (394)
T PLN02155        148 ISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTR  227 (394)
T ss_pred             eeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCc
Confidence            99999999999999999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC-CCCeEEEEEeC
Q 015319          345 NVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV-MIPSGTQCYNS  408 (409)
Q Consensus       345 nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G-~~g~v~~~~~~  408 (409)
                      ||+|+||+|..+|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||||++ ++|+|+||+.+
T Consensus       228 nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~  292 (394)
T PLN02155        228 NFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQ  292 (394)
T ss_pred             eEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEE
Confidence            99999999999999999999988778899999999999999999999999986 78999999864

>PLN03010 polygalacturonase

Probab=100.00  E-value=4.7e-58  Score=465.45  Aligned_cols=256  Identities=41%  Similarity=0.796  Sum_probs=239.7

Q ss_pred             CceEEEeeccccCCCCCccHHHHHHHHHHHhhcCC--cEEEECCceEEEeCCcccCCCccc-cceEEEecceEEcCCCCc
Q 015319          107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEA--SIMVVPAESVFLVGPMSFSGPYCQ-ANIIFQLDGTIIAPTGSK  183 (409)
Q Consensus       107 ~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg--~~v~vP~G~~y~~~~i~l~g~~~~-s~~~l~l~Gtl~~~~~~~  183 (409)
                      .++|||+||||+|||++|||+|||+||++||..+|  ++|+||+|.+|+++||.|.+| |+ ++++|+++|+|+++++..
T Consensus        44 ~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~p-c~~~~v~l~l~G~l~~~~d~~  122 (409)
T PLN03010         44 GQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGP-CKSTSIKVQLDGIIVAPSNIV  122 (409)
T ss_pred             CcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCC-CCCCcEEEEEccEEEccCChh
Confidence            46899999999999999999999999998886543  799999998899999999988 75 689999999999999999


Q ss_pred             ccCC-CceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCc
Q 015319          184 DWGK-GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKP  262 (409)
Q Consensus       184 ~~~~-g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp  262 (409)
                      .|.. ....|+.|.+++||+|+|+|+|||+|+.||.                                            
T Consensus       123 ~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~--------------------------------------------  158 (409)
T PLN03010        123 AWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE--------------------------------------------  158 (409)
T ss_pred             hccCCCCcceEEEecccccEEeeceEEeCCCccccc--------------------------------------------
Confidence            9964 2457999999999999999999999999983                                            


Q ss_pred             eeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCC
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG  342 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg  342 (409)
                       +++|.+|+|++|+|++++|+++|++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++
T Consensus       159 -~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg  237 (409)
T PLN03010        159 -ALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG  237 (409)
T ss_pred             -eEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC
Confidence             4789999999999999999999999999999999999999998888999999999999999999999999999999999


Q ss_pred             ceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          343 CSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       343 ~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      +.|+.|++++|.++|||+|||+|++++.+.|+||+|+||+|.++.+|+|||||+|++|+|+||..+
T Consensus       238 s~ni~I~~~~C~~gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~  303 (409)
T PLN03010        238 SSNINITQINCGPGHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFE  303 (409)
T ss_pred             CCcEEEEEEEeECcCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEE
Confidence            999999999999999999999998877788999999999999999999999999999999998753

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=100.00  E-value=3e-57  Score=460.13  Aligned_cols=268  Identities=38%  Similarity=0.703  Sum_probs=239.3

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhhc-CCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcc
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKV-EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD  184 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~-gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~  184 (409)
                      ...+|||+||||+|||.+|||+|||+||++||.. ||++|+||+| +|++++|.|.|| |++...|.|  +|+++++..+
T Consensus        33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G-~yl~g~i~lkgp-c~~~s~v~l--~L~~s~d~~~  108 (404)
T PLN02188         33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPG-TYYIGPVQFHGP-CTNVSSLTF--TLKAATDLSR  108 (404)
T ss_pred             CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCC-eEEEEeEEeCCC-cCcceeEEE--EEEcCCCHHH
Confidence            4479999999999999999999999999876654 5679999999 899999999987 765445555  9999999999


Q ss_pred             cCCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCcee
Q 015319          185 WGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTA  264 (409)
Q Consensus       185 ~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~  264 (409)
                      |.. ...|+.|..++||+|+|+|+|||+|+.||.....  +                           . ......||++
T Consensus       109 y~~-~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~--~---------------------------~-~~~~~~rP~~  157 (404)
T PLN02188        109 YGS-GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKC--P---------------------------I-RKDCKLLPTS  157 (404)
T ss_pred             CCC-ccceEEEeceeeEEEEeeEEEeCCCccccccccc--c---------------------------c-CCCCCcCceE
Confidence            975 3569999999999999999999999999975310  0                           0 0111258999


Q ss_pred             EEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCce
Q 015319          265 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCS  344 (409)
Q Consensus       265 i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~  344 (409)
                      |.|..|+|++|+|++++|+++|++++..|++|+|++++|.++.+++|+||||+++|+||+|+||+|.++||||+++++++
T Consensus       158 i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~  237 (404)
T PLN02188        158 VKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNS  237 (404)
T ss_pred             EEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCc
Confidence            99999999999999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             eEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC--CCCeEEEEEeC
Q 015319          345 NVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV--MIPSGTQCYNS  408 (409)
Q Consensus       345 nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G--~~g~v~~~~~~  408 (409)
                      ||+|+||.|..+|||+|||+|++.+.+.|+||+|+||+|.++.+|+|||||+|  +.|+|+||+.+
T Consensus       238 nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~  303 (404)
T PLN02188        238 QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFE  303 (404)
T ss_pred             cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEE
Confidence            99999999999999999999988778889999999999999999999999987  46899998754

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=100.00  E-value=4.7e-44  Score=356.37  Aligned_cols=234  Identities=35%  Similarity=0.613  Sum_probs=201.4

Q ss_pred             CCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEecccCeeeeeceEEeCCCcccccC
Q 015319          140 EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQD  219 (409)
Q Consensus       140 gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~  219 (409)
                      ++++|+||+| +|+++++.|.++ |..+..++|+|++.++.....|..  .+||.+.+++|++|+|+|+|||+|+.||..
T Consensus         5 ~~~~v~vP~g-~~~~~~~~l~~~-l~~~~~~~l~G~~~~~~~~~~~~~--~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~   80 (326)
T PF00295_consen    5 GGGTVVVPAG-TYLLGPLFLKST-LHSDVGLTLDGTINFSYDNWEGPN--SALIYAENAENITITGKGTIDGNGQAWWDG   80 (326)
T ss_dssp             EEESEEESTS-TEEEEETSEETE-CETTCEEEEESEEEEG-EESTSE---SEEEEEESEEEEECTTSSEEE--GGGTCSS
T ss_pred             cCCEEEECCC-CeEEceeEEEcc-cCCCeEEEEEEEEEeCCCcccCCc--cEEEEEEceEEEEecCCceEcCchhhhhcc
Confidence            4678999999 899999999652 458999999999998854444432  789999999999999999999999999976


Q ss_pred             CCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEE
Q 015319          220 YPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVH  299 (409)
Q Consensus       220 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~  299 (409)
                      ....                               ......||+++.|.+|+|++|++++++|+++|++++..|++|+|+
T Consensus        81 ~~~~-------------------------------~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~  129 (326)
T PF00295_consen   81 SGDA-------------------------------NNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTIS  129 (326)
T ss_dssp             CTTH-------------------------------CCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEE
T ss_pred             cccc-------------------------------ccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEc
Confidence            4100                               012235899999999999999999999999999999999999999


Q ss_pred             eEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEE
Q 015319          300 DVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVR  379 (409)
Q Consensus       300 n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~  379 (409)
                      +++|.++...+|+|||++.+|+||+|+||+|.++||||+++++..||+|+||+|.++||++|||++..+....|+||+|+
T Consensus       130 ~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~  209 (326)
T PF00295_consen  130 NITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFE  209 (326)
T ss_dssp             SEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEE
T ss_pred             ceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEE
Confidence            99999987779999999999999999999999999999999998899999999999999999999866545679999999


Q ss_pred             eEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          380 DVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       380 n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      ||+|.++.+|++||+|+|++|+|+||..+
T Consensus       210 n~~i~~t~~gi~iKt~~~~~G~v~nI~f~  238 (326)
T PF00295_consen  210 NCTIINTDNGIRIKTWPGGGGYVSNITFE  238 (326)
T ss_dssp             EEEEESESEEEEEEEETTTSEEEEEEEEE
T ss_pred             EEEeeccceEEEEEEecccceEEeceEEE
Confidence            99999999999999999999999999753

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.4e-41  Score=350.25  Aligned_cols=288  Identities=28%  Similarity=0.442  Sum_probs=225.5

Q ss_pred             CCCCceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEec-c-eEEcCCC
Q 015319          104 SHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD-G-TIIAPTG  181 (409)
Q Consensus       104 ~~~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~-G-tl~~~~~  181 (409)
                      ......++|.+|||++||.+|+++|||+||++|...+|++|+||+| +|+.++|.|     +|+++|+++ | ||+++.+
T Consensus        77 ~~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~a~Gg~V~lPaG-tylsg~l~L-----KS~~~L~l~egatl~~~~~  150 (542)
T COG5434          77 AATDTAFSVSDDGAVGDGATDNTAAIQAAIDACASAGGGTVLLPAG-TYLSGPLFL-----KSNVTLHLAEGATLLASSN  150 (542)
T ss_pred             ccccceeeeccccccccCCccCHHHHHHHHHhhhhhcCceEEECCc-eeEeeeEEE-----ecccEEEecCCceeeCCCC
Confidence            3466789999999999999999999999999988889999999999 999999999     899999995 7 9999999


Q ss_pred             CcccCC-------CceeeEEEecccCeeeeeceEEeCCCc--ccccCCCCCCCCCccccccccccCC---CC-CCCCCCC
Q 015319          182 SKDWGK-------GLLWWLDFTKLKGITIQGKGIIDGRGS--VWWQDYPYDDPIDDESKLIIPLHNN---TL-PYKPPTP  248 (409)
Q Consensus       182 ~~~~~~-------g~~~~i~~~~~~nVtI~G~G~IdG~G~--~~w~~~~~~~p~~~~~~~~~~~~~~---~~-~~~~~~~  248 (409)
                      +++|..       .....++.+...+..|.++|.+|+.+.  .||..... ....+ ...+..  +.   .. .......
T Consensus       151 p~~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~-~~i~g-~~~i~g--~~~~~g~~~~~~~g~  226 (542)
T COG5434         151 PKDYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNR-KEIWG-KGTIDG--NGYKRGDKWFSGLGA  226 (542)
T ss_pred             hhhccccccccccccCcceeeecccCceeeeecccccCcccceeccCCce-EEEec-cceecC--ccccchhhhhhcccc
Confidence            999973       123344555555555555554444221  22211100 00000 000000  00   00 0000001


Q ss_pred             ccccccCCCCCCCceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEee
Q 015319          249 IRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTS  328 (409)
Q Consensus       249 ~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~  328 (409)
                      +..+..++  ..||..+.+.+|+||+++|++|.|++.|.+++..|++++++|++|.+.... |+|||++.+|+||+|++|
T Consensus       227 ~~~~i~~~--~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~  303 (542)
T COG5434         227 VETRIGGK--GVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGC  303 (542)
T ss_pred             hhhccccc--CcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEecc
Confidence            11122111  168999999999999999999999999999999999999999999997654 999999999999999999


Q ss_pred             EEeeCCCeEEeCCC-----------ceeEEEEEEEEcCCCe-eEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeec
Q 015319          329 NLACGDDCVSIQTG-----------CSNVYVHNVNCGPGHG-ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ  396 (409)
Q Consensus       329 ~i~~gDD~Iai~sg-----------~~nV~I~n~~~~~g~G-isIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~  396 (409)
                      +|+++||||++++|           ++||.|+||++..+|| +.+|||    +.+.|+||++|||.|.++.+|+||||..
T Consensus       304 ~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~  379 (542)
T COG5434         304 RFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTND  379 (542)
T ss_pred             EEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeec
Confidence            99999999999986           6899999999999997 899998    7889999999999999999999999999


Q ss_pred             CCCCeEEEEEeC
Q 015319          397 VMIPSGTQCYNS  408 (409)
Q Consensus       397 G~~g~v~~~~~~  408 (409)
                      |++|.|+||+..
T Consensus       380 ~~gG~v~nI~~~  391 (542)
T COG5434         380 GRGGGVRNIVFE  391 (542)
T ss_pred             ccceeEEEEEEe
Confidence            999999999863

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=99.91  E-value=4.9e-23  Score=208.14  Aligned_cols=226  Identities=16%  Similarity=0.235  Sum_probs=177.4

Q ss_pred             ceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEec-ceEEcCCCCcccC
Q 015319          108 SVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD-GTIIAPTGSKDWG  186 (409)
Q Consensus       108 ~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~-Gtl~~~~~~~~~~  186 (409)
                      +.+++++|||++||.+|+|+|||+||++|. .++.+|.||+| +|+.+++.|     +++++|..+ |....     .+.
T Consensus        36 r~~dv~~fGa~~dG~td~T~ALQaAIdaAa-~gG~tV~Lp~G-~Y~~G~L~L-----~spltL~G~~gAt~~-----vId  103 (455)
T TIGR03808        36 LGRDATQYGVRPNSPDDQTRALQRAIDEAA-RAQTPLALPPG-VYRTGPLRL-----PSGAQLIGVRGATRL-----VFT  103 (455)
T ss_pred             cCCCHHHcCcCCCCcchHHHHHHHHHHHhh-cCCCEEEECCC-ceecccEEE-----CCCcEEEecCCcEEE-----EEc
Confidence            448999999999999999999999999765 45689999999 899999999     688999887 43210     001


Q ss_pred             CCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEE
Q 015319          187 KGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALR  266 (409)
Q Consensus       187 ~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~  266 (409)
                      .+ ...+...++++|+|+|. +|+|+|..|-                                          .++.+|+
T Consensus       104 G~-~~lIiai~A~nVTIsGL-tIdGsG~dl~------------------------------------------~rdAgI~  139 (455)
T TIGR03808       104 GG-PSLLSSEGADGIGLSGL-TLDGGGIPLP------------------------------------------QRRGLIH  139 (455)
T ss_pred             CC-ceEEEEecCCCeEEEee-EEEeCCCccc------------------------------------------CCCCEEE
Confidence            11 45566788999999997 9999995431                                          2566899


Q ss_pred             EEeeeeEEEeceEEecCCCCeEEeecCc----------------------cEEEEeEEEeCCCC----------------
Q 015319          267 FYGSFNVTVTGITIQNSPQCHLKFDNCI----------------------GVVVHDVSVSSPGD----------------  308 (409)
Q Consensus       267 ~~~~~nv~I~gvti~ns~~~~i~~~~~~----------------------nV~I~n~~I~s~~~----------------  308 (409)
                      +..|++++|++++|.++..|+|.+..|+                      ++.|++.+|....+                
T Consensus       140 v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~  219 (455)
T TIGR03808       140 CQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTI  219 (455)
T ss_pred             EccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcce
Confidence            9999999999999999988999999999                      88888887765433                


Q ss_pred             ----------------CCCCCceeecCcccEEEEeeEEeeCC-CeEEeCCCceeEEEEEEEEcCCCeeEEEecCCCCCCC
Q 015319          309 ----------------SPNTDGIHLQNSKDVLIHTSNLACGD-DCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKA  371 (409)
Q Consensus       309 ----------------~~n~DGI~l~~s~nV~I~n~~i~~gD-D~Iai~sg~~nV~I~n~~~~~g~GisIGs~g~~~~~~  371 (409)
                                      ....+||++..+.+++|++++|+.++ |+|.+.+ ++|+.|+++.|..-.=..+.++-  .   
T Consensus       220 v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhymf--s---  293 (455)
T TIGR03808       220 VTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSEF--A---  293 (455)
T ss_pred             eeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEEE--e---
Confidence                            45778999999999999999999998 9998888 68888888888863222444431  1   


Q ss_pred             cEEEEEEEeEEEecccceEEEEeec
Q 015319          372 CVSNITVRDVMMHNTMNGVRIKTWQ  396 (409)
Q Consensus       372 ~v~nI~v~n~~~~~~~~Gi~Ikt~~  396 (409)
                       .+--.|+||++.+...|+.|-.+.
T Consensus       294 -~~g~~i~~N~~~g~~~G~av~nf~  317 (455)
T TIGR03808       294 -FEGAVIANNTVDGAAVGVSVCNFN  317 (455)
T ss_pred             -CCCcEEeccEEecCcceEEEEeec
Confidence             111457778888888888888764

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=99.88  E-value=3.6e-21  Score=179.53  Aligned_cols=214  Identities=27%  Similarity=0.401  Sum_probs=142.3

Q ss_pred             eEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeC-CcccCCCccccceEEEecc---e-EEcCCCCc
Q 015319          109 VFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVG-PMSFSGPYCQANIIFQLDG---T-IIAPTGSK  183 (409)
Q Consensus       109 ~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~-~i~l~g~~~~s~~~l~l~G---t-l~~~~~~~  183 (409)
                      ++||++|||++||++|||+|||+||+++...++++||||+| +|++. ++.+     .++++|+.+|   + +.......
T Consensus         1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~~~g~~v~~P~G-~Y~i~~~l~~-----~s~v~l~G~g~~~~~~~~~~~~~   74 (225)
T PF12708_consen    1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAAAGGGVVYFPPG-TYRISGTLII-----PSNVTLRGAGGNSTILFLSGSGD   74 (225)
T ss_dssp             EEEGGGGT--TEEEEE-HHHHHHHHHHHCSTTSEEEEE-SE-EEEESS-EEE------TTEEEEESSTTTEEEEECTTTS
T ss_pred             CcceeecCcCCCCChhHHHHHHHhhhhcccCCCeEEEEcCc-EEEEeCCeEc-----CCCeEEEccCCCeeEEEecCccc
Confidence            48999999999999999999999997778888999999999 66665 5887     6899999985   3 33222222


Q ss_pred             ccCCCceeeEEEec-ccCe--eeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCC
Q 015319          184 DWGKGLLWWLDFTK-LKGI--TIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSI  260 (409)
Q Consensus       184 ~~~~g~~~~i~~~~-~~nV--tI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (409)
                      .+.. ......+.. ..++  .|++ -+|++.+...-                                          .
T Consensus        75 ~~~~-~~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~~------------------------------------------~  110 (225)
T PF12708_consen   75 SFSV-VPGIGVFDSGNSNIGIQIRN-LTIDGNGIDPN------------------------------------------N  110 (225)
T ss_dssp             TSCC-EEEEEECCSCSCCEEEEEEE-EEEEETCGCE-------------------------------------------S
T ss_pred             cccc-ccceeeeecCCCCceEEEEe-eEEEcccccCC------------------------------------------C
Confidence            2210 011111111 1122  2444 44555542110                                          0


Q ss_pred             CceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecC-cccEEEEeeEEeeCCCeEEe
Q 015319          261 KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN-SKDVLIHTSNLACGDDCVSI  339 (409)
Q Consensus       261 rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~-s~nV~I~n~~i~~gDD~Iai  339 (409)
                      ...++.|..+.++.|+++++.+....++.+..++...+.+.....        ++.+.. +.++.+.+|.+..+++++..
T Consensus       111 ~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~  182 (225)
T PF12708_consen  111 NNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIIL  182 (225)
T ss_dssp             CEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEEC
T ss_pred             CceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEe
Confidence            145788889999999999999988888888866665554443331        344433 35688899999999999433


Q ss_pred             CCCceeEEEEEEEEcC--CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEE
Q 015319          340 QTGCSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVR  391 (409)
Q Consensus       340 ~sg~~nV~I~n~~~~~--g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~  391 (409)
                      +  .++++|+||.+..  ..||.+...         .+++|+|++|+++..||.
T Consensus       183 ~--~~~~~i~n~~~~~~~~~gi~i~~~---------~~~~i~n~~i~~~~~g~~  225 (225)
T PF12708_consen  183 G--NNNITISNNTFEGNCGNGINIEGG---------SNIIISNNTIENCDDGID  225 (225)
T ss_dssp             E--EEEEEEECEEEESSSSESEEEEEC---------SEEEEEEEEEESSSEEEE
T ss_pred             e--cceEEEEeEEECCccceeEEEECC---------eEEEEEeEEEECCccCcC
Confidence            3  3899999999987  458888653         359999999999999874

...

>PLN02793 Probable polygalacturonase

Probab=99.67  E-value=9.2e-15  Score=151.00  Aligned_cols=137  Identities=20%  Similarity=0.266  Sum_probs=116.1

Q ss_pred             eEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      .+.+.+|+||+|++++|.+..    ..+|++.+|++|+|+|++|++     .+|+|.+. +|+||+|+||.+..| .+|+
T Consensus       202 ~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~G-hGis  275 (443)
T PLN02793        202 HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPG-HGIS  275 (443)
T ss_pred             EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCC-ccEE
Confidence            577889999999999998743    346999999999999999999     78999996 789999999999777 5799


Q ss_pred             eCC--------CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCC----------C
Q 015319          339 IQT--------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVM----------I  399 (409)
Q Consensus       339 i~s--------g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~----------~  399 (409)
                      |++        +++||+|+||++.+ ..|+.|.+.-  +..+.|+||+|+|++|.+..++|.|..+...          .
T Consensus       276 IGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~--g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~  353 (443)
T PLN02793        276 IGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQ--GGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSA  353 (443)
T ss_pred             EecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeC--CCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCC
Confidence            987        37999999999998 5799999862  2356899999999999999999999986532          1


Q ss_pred             CeEEEEEeC
Q 015319          400 PSGTQCYNS  408 (409)
Q Consensus       400 g~v~~~~~~  408 (409)
                      ..++||+.+
T Consensus       354 v~I~nI~~~  362 (443)
T PLN02793        354 VKVENISFV  362 (443)
T ss_pred             eEEEeEEEE
Confidence            347777653

>PLN02218 polygalacturonase ADPG

Probab=99.62  E-value=4.6e-14  Score=145.31  Aligned_cols=136  Identities=18%  Similarity=0.217  Sum_probs=114.6

Q ss_pred             eEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      .+++..|+||+|++++|.+..    ..+|++.+|+||+|+|++|.+     .+|+|.+. +++||+|+||++..| .+|+
T Consensus       217 ~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GDDcIaIksgs~nI~I~n~~c~~G-HGis  290 (431)
T PLN02218        217 QISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GDDCISIESGSQNVQINDITCGPG-HGIS  290 (431)
T ss_pred             EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-----CCceEEecCCCceEEEEeEEEECC-CCEE
Confidence            678899999999999998642    346999999999999999999     78999996 478999999999765 6799


Q ss_pred             eCC--------CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCC---------CC
Q 015319          339 IQT--------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVM---------IP  400 (409)
Q Consensus       339 i~s--------g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~---------~g  400 (409)
                      |++        +.+||+|+||++.+ ..|+.|.+.-  +..+.|+||+|+|++|++..++|.|......         ..
T Consensus       291 IGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~--Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v  368 (431)
T PLN02218        291 IGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ--GGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAV  368 (431)
T ss_pred             ECcCCCCCCCceEEEEEEEccEEecCCcceEEeecC--CCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCe
Confidence            987        37899999999998 5799999862  3457899999999999999999999976432         23


Q ss_pred             eEEEEEe
Q 015319          401 SGTQCYN  407 (409)
Q Consensus       401 ~v~~~~~  407 (409)
                      .++||..
T Consensus       369 ~I~nI~~  375 (431)
T PLN02218        369 QVKNVVY  375 (431)
T ss_pred             EEEEEEE
Confidence            4677765

>PLN02188 polygalacturonase/glycoside hydrolase family protein

Probab=99.62  E-value=9.1e-14  Score=142.12  Aligned_cols=138  Identities=17%  Similarity=0.267  Sum_probs=114.6

Q ss_pred             eEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      .+++..|+||+|++++|.+..    ..+|++++|++|+|+|++|.+     .+|+|.+. +++||+|+||....+ .+|+
T Consensus       180 ~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~g-hGis  253 (404)
T PLN02188        180 HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGPG-HGIS  253 (404)
T ss_pred             EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcCC-CcEE
Confidence            678899999999999998643    345999999999999999999     78999996 578999999999766 6799


Q ss_pred             eCC--------CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC----------CC
Q 015319          339 IQT--------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV----------MI  399 (409)
Q Consensus       339 i~s--------g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G----------~~  399 (409)
                      |++        +.+||+|+||++.+ .+|+.|.+.-.....+.|+||+|+|++|++..++|.|.....          ..
T Consensus       254 iGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~  333 (404)
T PLN02188        254 VGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSG  333 (404)
T ss_pred             eCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCC
Confidence            987        37999999999998 579999875322235689999999999999999999987432          12


Q ss_pred             CeEEEEEe
Q 015319          400 PSGTQCYN  407 (409)
Q Consensus       400 g~v~~~~~  407 (409)
                      ..++||+.
T Consensus       334 v~I~nIt~  341 (404)
T PLN02188        334 VTLSDIYF  341 (404)
T ss_pred             cEEEeEEE
Confidence            45677765

>PLN03010 polygalacturonase

Probab=99.60  E-value=1.4e-13  Score=140.69  Aligned_cols=170  Identities=19%  Similarity=0.259  Sum_probs=134.0

Q ss_pred             ccceEEEecceEEcCCCCcccCCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCC
Q 015319          165 QANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYK  244 (409)
Q Consensus       165 ~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~  244 (409)
                      .+++.|...|+|-...  ..|..    ++.|.+++|+.|+|-=+.+..                                
T Consensus       138 v~nv~I~G~G~IDG~G--~~ww~----~l~~~~~~nv~v~gitl~nsp--------------------------------  179 (409)
T PLN03010        138 VSGLMIDGSGTIDGRG--SSFWE----ALHISKCDNLTINGITSIDSP--------------------------------  179 (409)
T ss_pred             ccccEEeeceEEeCCC--ccccc----eEEEEeecCeEEeeeEEEcCC--------------------------------
Confidence            4788888888886422  12321    488999999999982122111                                


Q ss_pred             CCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecC-
Q 015319          245 PPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN-  319 (409)
Q Consensus       245 ~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~-  319 (409)
                                       ...+++.+|+||+|++++|.++.    ..+|++..|++|+|+|++|.+     .+|+|.+.+ 
T Consensus       180 -----------------~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~-----gDDcIaiksg  237 (409)
T PLN03010        180 -----------------KNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQT-----GDDCIAINSG  237 (409)
T ss_pred             -----------------ceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEec-----CCCeEEecCC
Confidence                             12578889999999999999753    335999999999999999999     789999975 


Q ss_pred             cccEEEEeeEEeeCCCeEEeCCC--------ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceE
Q 015319          320 SKDVLIHTSNLACGDDCVSIQTG--------CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGV  390 (409)
Q Consensus       320 s~nV~I~n~~i~~gDD~Iai~sg--------~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi  390 (409)
                      +.++.|+++....+ .+|+|++-        .+||+|+||++.+ .+|+.|.+..  +..+.|+||+|+|++|++..++|
T Consensus       238 s~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~--G~~G~v~nItf~nI~m~~v~~pI  314 (409)
T PLN03010        238 SSNINITQINCGPG-HGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQ--GGQGYARNISFENITLINTKNPI  314 (409)
T ss_pred             CCcEEEEEEEeECc-CCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEec--CCCEEEEEeEEEeEEEecCCccE
Confidence            45888887777654 57999873        7999999999998 4799999862  24568999999999999999999


Q ss_pred             EEEeecC
Q 015319          391 RIKTWQV  397 (409)
Q Consensus       391 ~Ikt~~G  397 (409)
                      .|.....
T Consensus       315 ~I~q~Y~  321 (409)
T PLN03010        315 IIDQQYI  321 (409)
T ss_pred             EEEeecc
Confidence            9988653

>PLN03003 Probable polygalacturonase At3g15720

Probab=99.60  E-value=1.1e-13  Score=142.50  Aligned_cols=174  Identities=19%  Similarity=0.263  Sum_probs=137.1

Q ss_pred             ccceEEEecceEEcCCCCcccCC---CceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCC
Q 015319          165 QANIIFQLDGTIIAPTGSKDWGK---GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTL  241 (409)
Q Consensus       165 ~s~~~l~l~Gtl~~~~~~~~~~~---g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~  241 (409)
                      ..+++|...|+|-... . .|..   ..-..+.|.+++|+.|+|-=+.+..                             
T Consensus       112 ~~~i~I~G~GtIDGqG-~-~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp-----------------------------  160 (456)
T PLN03003        112 IEGLVIEGDGEINGQG-S-SWWEHKGSRPTALKFRSCNNLRLSGLTHLDSP-----------------------------  160 (456)
T ss_pred             ccceEEeccceEeCCc-h-hhhhcccCCceEEEEEecCCcEEeCeEEecCC-----------------------------
Confidence            4677888778876533 1 2332   1233688999999999982111111                             


Q ss_pred             CCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceee
Q 015319          242 PYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHL  317 (409)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l  317 (409)
                                          -..+++.+|+||+|++++|.+..    ..+|++.+|+||+|+|++|.+     .+|+|.+
T Consensus       161 --------------------~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIai  215 (456)
T PLN03003        161 --------------------MAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAI  215 (456)
T ss_pred             --------------------cEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEe
Confidence                                12678899999999999999743    345999999999999999999     7899999


Q ss_pred             c-CcccEEEEeeEEeeCCCeEEeCCC--------ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          318 Q-NSKDVLIHTSNLACGDDCVSIQTG--------CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       318 ~-~s~nV~I~n~~i~~gDD~Iai~sg--------~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      . +|+||+|+||++..+ .+|+|++-        .+||+|+||++.+ .+|+.|.+.-  +..+.|+||+|+|++|.+..
T Consensus       216 ksgs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~--Gg~G~v~nItf~nI~m~nV~  292 (456)
T PLN03003        216 NSGTSNIHISGIDCGPG-HGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQ--GGSGYARMITFNGITLDNVE  292 (456)
T ss_pred             CCCCccEEEEeeEEECC-CCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeC--CCCeEEEEEEEEeEEecCcc
Confidence            6 467999999999876 68999872        7999999999998 5799999862  23467999999999999999


Q ss_pred             ceEEEEeecC
Q 015319          388 NGVRIKTWQV  397 (409)
Q Consensus       388 ~Gi~Ikt~~G  397 (409)
                      ++|.|....+
T Consensus       293 ~pI~Idq~Y~  302 (456)
T PLN03003        293 NPIIIDQFYN  302 (456)
T ss_pred             ceEEEEcccC
Confidence            9999988764

>PLN02155 polygalacturonase

Probab=99.56  E-value=2.6e-13  Score=138.22  Aligned_cols=138  Identities=20%  Similarity=0.222  Sum_probs=114.8

Q ss_pred             eEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecC-cccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN-SKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~-s~nV~I~n~~i~~gDD~Ia  338 (409)
                      .+++.+|+||+|++++|.+..    ..+|++.+|++|+|+|++|.+     .+|+|.+.+ |+||+|+||.+..| .+|+
T Consensus       170 ~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~G-hGis  243 (394)
T PLN02155        170 HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGPG-HGVS  243 (394)
T ss_pred             EEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEec-----CCceEEcCCCCceEEEEEEEEECC-ceEE
Confidence            678899999999999999753    246999999999999999999     789999974 78999999999876 6799


Q ss_pred             eCCC--------ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCC----------C
Q 015319          339 IQTG--------CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVM----------I  399 (409)
Q Consensus       339 i~sg--------~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~----------~  399 (409)
                      |++-        .+||+|+||++.+ .+|+.|.+.-+ ...+.|+||+|+|++|++..++|.|......          .
T Consensus       244 IGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~  322 (394)
T PLN02155        244 IGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSG  322 (394)
T ss_pred             eccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCC
Confidence            9882        6999999999998 57999988411 1357899999999999999999999764421          1


Q ss_pred             CeEEEEEeC
Q 015319          400 PSGTQCYNS  408 (409)
Q Consensus       400 g~v~~~~~~  408 (409)
                      ..++||+.+
T Consensus       323 v~i~~It~~  331 (394)
T PLN02155        323 VKISQVTYK  331 (394)
T ss_pred             eEEEEEEEE
Confidence            257777654

>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3

Probab=99.55  E-value=2.7e-13  Score=135.46  Aligned_cols=136  Identities=23%  Similarity=0.266  Sum_probs=113.9

Q ss_pred             eEEEEeeeeEEEeceEEecCCC----CeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcc-cEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQ----CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSK-DVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~----~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~-nV~I~n~~i~~gDD~Ia  338 (409)
                      .+.+..|+|++|++++|.+...    .+|++..|++|+|+||.|++     .+|+|.+.+.+ ||+|+||++..+ .+++
T Consensus       117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~g-hGis  190 (326)
T PF00295_consen  117 HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGG-HGIS  190 (326)
T ss_dssp             SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEES-----SSESEEESSEECEEEEESEEEESS-SEEE
T ss_pred             EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccc-----ccCcccccccccceEEEeEEEecc-ccce
Confidence            5788899999999999997653    36999999999999999999     79999998766 999999999865 6698


Q ss_pred             eCC---C-----ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCC---------CC
Q 015319          339 IQT---G-----CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVM---------IP  400 (409)
Q Consensus       339 i~s---g-----~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~---------~g  400 (409)
                      |++   +     .+||+|+||++.+ .+|+.|.+.-  ...+.|+||+|+|++|++..++|.|......         .+
T Consensus       191 iGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~  268 (326)
T PF00295_consen  191 IGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGV  268 (326)
T ss_dssp             EEEESSSSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSS
T ss_pred             eeeccCCccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCc
Confidence            865   2     5899999999998 5799998852  3567899999999999999999999875332         23


Q ss_pred             eEEEEEe
Q 015319          401 SGTQCYN  407 (409)
Q Consensus       401 ~v~~~~~  407 (409)
                      .++||..
T Consensus       269 ~i~nI~~  275 (326)
T PF00295_consen  269 SISNITF  275 (326)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            5677654

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=99.52  E-value=5e-13  Score=132.85  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=26.5

Q ss_pred             HHHHHHHHhhcCCcEEEECCceEEEe-CCcccCCCccccceEEEec
Q 015319          129 FEAAWAAACKVEASIMVVPAESVFLV-GPMSFSGPYCQANIIFQLD  173 (409)
Q Consensus       129 iq~Ai~~a~~~gg~~v~vP~G~~y~~-~~i~l~g~~~~s~~~l~l~  173 (409)
                      ||+|+++|..  |.+|+||+| +|.. ++|.+.    +++++|...
T Consensus         1 iQ~Ai~~A~~--GDtI~l~~G-~Y~~~~~l~I~----~~~Iti~G~   39 (314)
T TIGR03805         1 LQEALIAAQP--GDTIVLPEG-VFQFDRTLSLD----ADGVTIRGA   39 (314)
T ss_pred             CHhHHhhCCC--CCEEEECCC-EEEcceeEEEe----CCCeEEEec
Confidence            6899987654  899999999 7754 556653    245555544

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3

Probab=99.48  E-value=3.4e-12  Score=131.13  Aligned_cols=195  Identities=21%  Similarity=0.261  Sum_probs=113.3

Q ss_pred             CcEEEECCceEEEeCC---cccCCCccccc-eEEEec-ceEEcCCCCcccCCCceeeEEEecccCeeeeeceEEeCCCcc
Q 015319          141 ASIMVVPAESVFLVGP---MSFSGPYCQAN-IIFQLD-GTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSV  215 (409)
Q Consensus       141 g~~v~vP~G~~y~~~~---i~l~g~~~~s~-~~l~l~-Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~  215 (409)
                      ..+|||++| +|.++.   +.|     .++ ..++++ |.++.           .++......+|+.|.|.|++.|.-..
T Consensus       232 ~~~lYF~PG-Vy~ig~~~~l~L-----~sn~~~VYlApGAyVk-----------GAf~~~~~~~nv~i~G~GVLSGe~Yv  294 (582)
T PF03718_consen  232 KDTLYFKPG-VYWIGSDYHLRL-----PSNTKWVYLAPGAYVK-----------GAFEYTDTQQNVKITGRGVLSGEQYV  294 (582)
T ss_dssp             SSEEEE-SE-EEEEBCTC-EEE------TT--EEEE-TTEEEE-----------S-EEE---SSEEEEESSSEEE-TTS-
T ss_pred             cceEEeCCc-eEEeCCCccEEE-----CCCccEEEEcCCcEEE-----------EEEEEccCCceEEEEeeEEEcCccee
Confidence            369999999 777765   565     455 477887 65543           23333468899999999999999766


Q ss_pred             cccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEE---EEeeeeEEEeceEEecCCCCeEEeec
Q 015319          216 WWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALR---FYGSFNVTVTGITIQNSPQCHLKFDN  292 (409)
Q Consensus       216 ~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~---~~~~~nv~I~gvti~ns~~~~i~~~~  292 (409)
                      |-..     +......+                   ....+.+...=.++.   ..++.+++++|++|.++|+|.+.+..
T Consensus       295 y~A~-----~~e~y~~~-------------------s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g  350 (582)
T PF03718_consen  295 YEAD-----TEESYLHL-------------------SGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYG  350 (582)
T ss_dssp             TTBB-----CCCTTSB--------------------SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEES
T ss_pred             Eecc-----CCCCcccc-------------------ccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecC
Confidence            5211     11110000                   000122222223454   34567999999999999999999985


Q ss_pred             Cc----cEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCC-e--eEEEecC
Q 015319          293 CI----GVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGH-G--ISIGSLG  365 (409)
Q Consensus       293 ~~----nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~-G--isIGs~g  365 (409)
                      -+    ...|+|.++-..+ ..++|||.+.  ++-+|+||++.+.||+|-+.-  +++.|+||+++..+ |  |.+|-. 
T Consensus       351 ~~~~~~~~~i~nyKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-  424 (582)
T PF03718_consen  351 NENDKFSMNISNYKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-  424 (582)
T ss_dssp             SSGGGEEEEEEEEEEE----CTT----B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS-
T ss_pred             CccccccceeeceeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-
Confidence            44    4789999998653 3699999996  677889999999999997764  89999999999843 3  777753 


Q ss_pred             CCCCCCcEEEEEEEeEEEecc
Q 015319          366 KDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       366 ~~~~~~~v~nI~v~n~~~~~~  386 (409)
                          ...++||.|+|+.+..+
T Consensus       425 ----pr~isnv~veni~IIh~  441 (582)
T PF03718_consen  425 ----PRNISNVSVENIDIIHN  441 (582)
T ss_dssp             -------EEEEEEEEEEEEE-
T ss_pred             ----ccccCceEEeeeEEEee
Confidence                44599999999999854

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.

>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]

Probab=99.25  E-value=9e-11  Score=122.96  Aligned_cols=124  Identities=19%  Similarity=0.293  Sum_probs=104.4

Q ss_pred             eeEEEEeeeeEEEeceEEecCCC---CeEEeecCccEEEEeEEEeCCCCCCCCCceeec------------CcccEEEEe
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQ---CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ------------NSKDVLIHT  327 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~---~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~------------~s~nV~I~n  327 (409)
                      ..+++..|+|++++|++|++...   .++++.+|+||.|++|+|++     .+|+|.+.            .+++|+|+|
T Consensus       262 ~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdt-----gDD~I~iksg~~~~~~~~~~~~~~i~i~~  336 (542)
T COG5434         262 WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDT-----GDDCIAIKSGAGLDGKKGYGPSRNIVIRN  336 (542)
T ss_pred             EEEeeecccCceecceEEECCCCCCCCccccccceeEEEeccEEec-----CCceEEeecccCCcccccccccccEEEec
Confidence            57889999999999999997654   36999999999999999999     55666654            368899999


Q ss_pred             eEEeeCCCeEEeCC----CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEE
Q 015319          328 SNLACGDDCVSIQT----GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIK  393 (409)
Q Consensus       328 ~~i~~gDD~Iai~s----g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ik  393 (409)
                      |++..+..++.+++    +.+||+++||.+.. ..|+.|++.-  ..++.++||+|+++.|.+...-..|-
T Consensus       337 c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~--~~gG~v~nI~~~~~~~~nv~t~~~i~  405 (542)
T COG5434         337 CYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTND--GRGGGVRNIVFEDNKMRNVKTKLSIN  405 (542)
T ss_pred             ceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeec--ccceeEEEEEEecccccCcccceeee
Confidence            99999988888866    48999999999998 7899999863  35688999999999999875444444

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=98.72  E-value=1e-07  Score=83.29  Aligned_cols=86  Identities=17%  Similarity=0.292  Sum_probs=42.2

Q ss_pred             eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCc
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC  343 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~  343 (409)
                      +|.+....+++|++++|.+....++.+..+..++|++++|..     ...|+++....+++|++|++.....++.+. ..
T Consensus         2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~   75 (158)
T PF13229_consen    2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS   75 (158)
T ss_dssp             CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred             EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence            345555666666666666666666666666666666666666     344555555455555555554433333333 23


Q ss_pred             eeEEEEEEEEcC
Q 015319          344 SNVYVHNVNCGP  355 (409)
Q Consensus       344 ~nV~I~n~~~~~  355 (409)
                      .++.|++|.+..
T Consensus        76 ~~~~i~~~~i~~   87 (158)
T PF13229_consen   76 SNITIENNRIEN   87 (158)
T ss_dssp             CS-EEES-EEEC
T ss_pred             CCceecCcEEEc
Confidence            444444444444

>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes

Probab=98.68  E-value=1.1e-07  Score=90.58  Aligned_cols=114  Identities=21%  Similarity=0.289  Sum_probs=84.1

Q ss_pred             EEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCC-----CCCceee------cCcccEEEEeeEEeeCC-
Q 015319          267 FYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSP-----NTDGIHL------QNSKDVLIHTSNLACGD-  334 (409)
Q Consensus       267 ~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~-----n~DGI~l------~~s~nV~I~n~~i~~gD-  334 (409)
                      |+.|+++++++++|.|+...   +..|++|.++|+.+.+.+...     .-|++.+      ++++||.|+|+++.+.| 
T Consensus        94 fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDA  170 (277)
T PF12541_consen   94 FRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDA  170 (277)
T ss_pred             hhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEecccc
Confidence            56788888888888887654   346888888888885544322     2334433      45788889988888765 


Q ss_pred             ----CeEEeCCC----------ceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEe
Q 015319          335 ----DCVSIQTG----------CSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKT  394 (409)
Q Consensus       335 ----D~Iai~sg----------~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt  394 (409)
                          ..|.+...          ++||++.||++.+.+|++.           +.|++.+||+|.+++..+.-.+
T Consensus       171 FWn~eNVtVyDS~i~GEYLgW~SkNltliNC~I~g~QpLCY-----------~~~L~l~nC~~~~tdlaFEyS~  233 (277)
T PF12541_consen  171 FWNCENVTVYDSVINGEYLGWNSKNLTLINCTIEGTQPLCY-----------CDNLVLENCTMIDTDLAFEYSN  233 (277)
T ss_pred             cccCCceEEEcceEeeeEEEEEcCCeEEEEeEEeccCccEe-----------ecceEEeCcEeecceeeeeecc
Confidence                23444331          7999999999999999887           6899999999999988776644

Proteins in this family are typically between 281 and 297 amino acids in length.

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=98.64  E-value=1.4e-06  Score=86.94  Aligned_cols=130  Identities=15%  Similarity=0.159  Sum_probs=98.0

Q ss_pred             ceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC-
Q 015319          262 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ-  340 (409)
Q Consensus       262 p~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~-  340 (409)
                      -..|.+..|++++|++.++......+|.+..|+++.|+++++..     +..||+++.|.++.|+++.+.+...+|.+. 
T Consensus       107 ~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~-----n~~GI~i~~S~~~~v~~N~~~~N~~Gi~v~~  181 (314)
T TIGR03805       107 AYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEE-----NVAGIEIENSQNADVYNNIATNNTGGILVFD  181 (314)
T ss_pred             cceEEEeccCCEEEECCEEECCCcccEEECCCCCeEEECCEEcc-----CcceEEEEecCCcEEECCEEeccceeEEEee
Confidence            34788889999999999999887778999999999999999976     678999999999999999998877888882 


Q ss_pred             ------CCceeEEEEEEEEcCCC--eeEEEe-cCCC-CCCCc-----EEEEEEEeEEEeccc-ceEEEEeec
Q 015319          341 ------TGCSNVYVHNVNCGPGH--GISIGS-LGKD-NTKAC-----VSNITVRDVMMHNTM-NGVRIKTWQ  396 (409)
Q Consensus       341 ------sg~~nV~I~n~~~~~g~--GisIGs-~g~~-~~~~~-----v~nI~v~n~~~~~~~-~Gi~Ikt~~  396 (409)
                            -.++++.|+++++.+..  .+.+.+ .... ..+.+     .+++.|+|++|.++. .||.|.++.
T Consensus       182 ~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~~  253 (314)
T TIGR03805       182 LPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISSYH  253 (314)
T ss_pred             cCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEecc
Confidence                  23689999999887631  111111 0000 00111     279999999999765 888887764

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=98.43  E-value=8e-06  Score=77.59  Aligned_cols=112  Identities=22%  Similarity=0.240  Sum_probs=82.4

Q ss_pred             eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCc
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGC  343 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~  343 (409)
                      .+.+..+.+++|++.++.+. ..++++..|.+++|+++++..     +.+||.+..+.+.+|++++|.....+|.+.. +
T Consensus        37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s  109 (236)
T PF05048_consen   37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-S  109 (236)
T ss_pred             EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence            45677788888888888877 677888888888888888887     4488888877767888888877666777766 4


Q ss_pred             eeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecc-cceEE
Q 015319          344 SNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNT-MNGVR  391 (409)
Q Consensus       344 ~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~-~~Gi~  391 (409)
                      .+.+|+++++.. ..||.+...         .+.+|++++|.+. ..||+
T Consensus       110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~  150 (236)
T PF05048_consen  110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIY  150 (236)
T ss_pred             CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceE
Confidence            666777777764 456776542         4667777777776 67777

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=98.41  E-value=4.6e-06  Score=72.71  Aligned_cols=121  Identities=22%  Similarity=0.319  Sum_probs=76.6

Q ss_pred             eeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC-CCeEEeCC
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG-DDCVSIQT  341 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g-DD~Iai~s  341 (409)
                      .++.+..+..++|++.+|.+ ...++.+....++.+++++|...     ..|+.+..+.+++|++|.+... +.+|.+..
T Consensus        24 ~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~-----~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~   97 (158)
T PF13229_consen   24 DGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN-----GSGIYVSGSSNITIENNRIENNGDYGIYISN   97 (158)
T ss_dssp             ECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES------SEEEECCS-CS-EEES-EEECSSS-SCE-TC
T ss_pred             eEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc-----cceEEEEecCCceecCcEEEcCCCccEEEec
Confidence            36777777778888888888 67778888888888888888873     3788888888888888888765 44787774


Q ss_pred             CceeEEEEEEEEcC--CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc-ceEEEEeec
Q 015319          342 GCSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKTWQ  396 (409)
Q Consensus       342 g~~nV~I~n~~~~~--g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~-~Gi~Ikt~~  396 (409)
                      ..++++|++|++..  +.|+.+....       -.+++|++|++.+.. +||++....
T Consensus        98 ~~~~~~i~~n~~~~~~~~gi~~~~~~-------~~~~~i~~n~i~~~~~~gi~~~~~~  148 (158)
T PF13229_consen   98 SSSNVTIENNTIHNNGGSGIYLEGGS-------SPNVTIENNTISNNGGNGIYLISGS  148 (158)
T ss_dssp             EECS-EEES-EEECCTTSSCEEEECC---------S-EEECEEEECESSEEEE-TT-S
T ss_pred             cCCCEEEEeEEEEeCcceeEEEECCC-------CCeEEEEEEEEEeCcceeEEEECCC
Confidence            25778888888887  3567775531       236778888888765 666655443

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=98.35  E-value=4.1e-05  Score=74.53  Aligned_cols=140  Identities=14%  Similarity=0.166  Sum_probs=93.7

Q ss_pred             eEEEEeeeeEEEeceEEecCC-----CCeEEe-ecCccEEEEeEEEeCCCC---CCCCCc-eee-cCcccEEEEeeEEee
Q 015319          264 ALRFYGSFNVTVTGITIQNSP-----QCHLKF-DNCIGVVVHDVSVSSPGD---SPNTDG-IHL-QNSKDVLIHTSNLAC  332 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~-----~~~i~~-~~~~nV~I~n~~I~s~~~---~~n~DG-I~l-~~s~nV~I~n~~i~~  332 (409)
                      .|.+..+.||.|++++|....     +..|.+ ....++.|++|++.....   ....|| +++ ..+..|+|.+|.|..
T Consensus       118 gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhd  197 (345)
T COG3866         118 GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHD  197 (345)
T ss_pred             eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeec
Confidence            355666788999999998777     345777 788999999999987421   123343 233 246789999999998


Q ss_pred             CCCeEEeCCC--------ceeEEEEEEEEcC--CCe--eEEEecCCC----------C---CCCcEEEEEEEeEEEeccc
Q 015319          333 GDDCVSIQTG--------CSNVYVHNVNCGP--GHG--ISIGSLGKD----------N---TKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       333 gDD~Iai~sg--------~~nV~I~n~~~~~--g~G--isIGs~g~~----------~---~~~~v~nI~v~n~~~~~~~  387 (409)
                      .|-.+-++..        -.+|++++|.|.+  .++  |++|..--+          +   +-+.-..|++|+++|.++.
T Consensus       198 h~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~  277 (345)
T COG3866         198 HDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGS  277 (345)
T ss_pred             CCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEEEEecceeccCC
Confidence            8887777653        3568888887776  222  555432110          0   1123368999999999877


Q ss_pred             ceEEEEeecCCCCeEE
Q 015319          388 NGVRIKTWQVMIPSGT  403 (409)
Q Consensus       388 ~Gi~Ikt~~G~~g~v~  403 (409)
                      .++.+---.|-+|+.+
T Consensus       278 ~~~~f~dt~~~~GY~~  293 (345)
T COG3866         278 EGLGFLDTKGTSGYAN  293 (345)
T ss_pred             CCceeeecCCccceEE
Confidence            6665554444467766

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=98.30  E-value=9.5e-06  Score=77.09  Aligned_cols=117  Identities=21%  Similarity=0.281  Sum_probs=100.8

Q ss_pred             eeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCC
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG  342 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg  342 (409)
                      ..+.+..++++.|++.++.+. ..++.+..+.+++|++++|..     +..||++..+++++|+++.+.....+|.+...
T Consensus        14 ~Gi~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s   87 (236)
T PF05048_consen   14 NGIYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMGS   87 (236)
T ss_pred             CcEEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEcC
Confidence            478899999999999999866 567899999999999999999     58999999999999999999988799999885


Q ss_pred             ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEee
Q 015319          343 CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTW  395 (409)
Q Consensus       343 ~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~  395 (409)
                      ..+ +|+++++.. ..||.+..         ..+.+|+++++.+...||.|..-
T Consensus        88 ~~~-~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s  131 (236)
T PF05048_consen   88 SNN-TISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS  131 (236)
T ss_pred             CCc-EEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC
Confidence            544 999999998 45787754         24588999999988899998765

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]

Probab=98.26  E-value=1.4e-05  Score=77.60  Aligned_cols=123  Identities=16%  Similarity=0.234  Sum_probs=96.6

Q ss_pred             EEEEeeeeEEEeceEEe-cCCCCeEEeecCccEEEEeEEEeCCCCC-CCCCceee-cCcccEEEEeeEEee---------
Q 015319          265 LRFYGSFNVTVTGITIQ-NSPQCHLKFDNCIGVVVHDVSVSSPGDS-PNTDGIHL-QNSKDVLIHTSNLAC---------  332 (409)
Q Consensus       265 i~~~~~~nv~I~gvti~-ns~~~~i~~~~~~nV~I~n~~I~s~~~~-~n~DGI~l-~~s~nV~I~n~~i~~---------  332 (409)
                      +.+.-|.|.+|.|+--. --..|++.+...+||.|+|++|...... ++.|+|.+ ..++||.|++|+|..         
T Consensus        95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h  174 (345)
T COG3866          95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH  174 (345)
T ss_pred             EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence            77788999999887532 1225778888999999999999975421 24699999 788999999999975         


Q ss_pred             CCCeEEeCCCceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          333 GDDCVSIQTGCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       333 gDD~Iai~sg~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      +|..+-|+-++.+|+|.+|.+.. ..++-+|+.......+.-.+|++.+|.|+++.
T Consensus       175 ~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~  230 (345)
T COG3866         175 GDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY  230 (345)
T ss_pred             CCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccccccc
Confidence            45568888889999999999998 45677787654444455678999999998763

>smart00656 Amb_all Amb_all domain

Probab=98.22  E-value=1.1e-05  Score=74.72  Aligned_cols=92  Identities=20%  Similarity=0.321  Sum_probs=47.6

Q ss_pred             CccEEEEeEEEeCCCC--CCCCCceeecCcccEEEEeeEEeeC----------CCeEEeCCCceeEEEEEEEEcCC-Cee
Q 015319          293 CIGVVVHDVSVSSPGD--SPNTDGIHLQNSKDVLIHTSNLACG----------DDCVSIQTGCSNVYVHNVNCGPG-HGI  359 (409)
Q Consensus       293 ~~nV~I~n~~I~s~~~--~~n~DGI~l~~s~nV~I~n~~i~~g----------DD~Iai~sg~~nV~I~n~~~~~g-~Gi  359 (409)
                      ++||.|+|++|+....  ....|+|.++.+++|.|++|.|..+          |..+.++.++.+|+|.+|.|..- .++
T Consensus        39 ~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~  118 (190)
T smart00656       39 VSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVM  118 (190)
T ss_pred             cceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEE
Confidence            4444444444443321  1245666666666666666666654          33455565666666666666542 245


Q ss_pred             EEEecCCCCCCCcEEEEEEEeEEEec
Q 015319          360 SIGSLGKDNTKACVSNITVRDVMMHN  385 (409)
Q Consensus       360 sIGs~g~~~~~~~v~nI~v~n~~~~~  385 (409)
                      -||+.-.+ ......+|++.+|.+.+
T Consensus       119 liG~~d~~-~~~~~~~vT~h~N~~~~  143 (190)
T smart00656      119 LLGHSDSD-TDDGKMRVTIAHNYFGN  143 (190)
T ss_pred             EEccCCCc-cccccceEEEECcEEcC
Confidence            55543111 11123456666666654

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans

Probab=98.11  E-value=0.00012  Score=70.42  Aligned_cols=92  Identities=15%  Similarity=0.243  Sum_probs=52.9

Q ss_pred             EEEEeeeeEEEeceEEecC---CCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCc------ccEEEEeeEEeeCCC
Q 015319          265 LRFYGSFNVTVTGITIQNS---PQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNS------KDVLIHTSNLACGDD  335 (409)
Q Consensus       265 i~~~~~~nv~I~gvti~ns---~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s------~nV~I~n~~i~~gDD  335 (409)
                      +.+....+.+|+|++|.|.   ...++.+..+ +.+|+|++|..    ...+||.+...      .+++|.+..+.....
T Consensus        91 ~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf~~----~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~  165 (246)
T PF07602_consen   91 VTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTFTN----NGREGIFVTGTSANPGINGNVISGNSIYFNKT  165 (246)
T ss_pred             EEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEEEC----CccccEEEEeeecCCcccceEeecceEEecCc
Confidence            4455677888999999988   2334666555 88888888887    34667765432      344455555444444


Q ss_pred             eEEeCCCce--eEEEEEEEEcC-CCeeEE
Q 015319          336 CVSIQTGCS--NVYVHNVNCGP-GHGISI  361 (409)
Q Consensus       336 ~Iai~sg~~--nV~I~n~~~~~-g~GisI  361 (409)
                      +|++.....  +-.|+|+.+.. ..||.+
T Consensus       166 Gi~i~~~~~~~~n~I~NN~I~~N~~Gi~~  194 (246)
T PF07602_consen  166 GISISDNAAPVENKIENNIIENNNIGIVA  194 (246)
T ss_pred             CeEEEcccCCccceeeccEEEeCCcCeEe
Confidence            555543211  12445555554 335443

Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).

>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein

Probab=98.11  E-value=3.6e-05  Score=79.11  Aligned_cols=86  Identities=13%  Similarity=0.149  Sum_probs=56.0

Q ss_pred             eEEEEeeeeEEEeceEEecCC------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEe-eCCCe
Q 015319          264 ALRFYGSFNVTVTGITIQNSP------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLA-CGDDC  336 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~-~gDD~  336 (409)
                      ++.-..++||+|+|++|.++.      ...|++..|++++|++++|...    ..-||+++.|+ ..|.++.|. ..+..
T Consensus       108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gs----g~FGI~L~~~~-~~I~~N~I~g~~~~~  182 (455)
T TIGR03808       108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGS----GGNGIWLETVS-GDISGNTITQIAVTA  182 (455)
T ss_pred             EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcC----CcceEEEEcCc-ceEecceEeccccce
Confidence            455668899999999999887      3358889999999999999983    13677777776 333333332 22333


Q ss_pred             EEeCCCceeEEEEEEEEcC
Q 015319          337 VSIQTGCSNVYVHNVNCGP  355 (409)
Q Consensus       337 Iai~sg~~nV~I~n~~~~~  355 (409)
                      |.+.. ++++.|+++++.+
T Consensus       183 I~lw~-S~g~~V~~N~I~g  200 (455)
T TIGR03808       183 IVSFD-ALGLIVARNTIIG  200 (455)
T ss_pred             EEEec-cCCCEEECCEEEc
Confidence            33322 3444444444444

Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.

>PLN02634 probable pectinesterase

Probab=98.04  E-value=0.00092  Score=67.52  Aligned_cols=110  Identities=9%  Similarity=0.002  Sum_probs=69.5

Q ss_pred             EEEeeeeEEEeceEEecCCC---------CeE-EeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319          266 RFYGSFNVTVTGITIQNSPQ---------CHL-KFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD  335 (409)
Q Consensus       266 ~~~~~~nv~I~gvti~ns~~---------~~i-~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD  335 (409)
                      ....++++..+||+|+|+..         ..+ .....+...+.+|.|..     ..|=+.... -.-..+||+|...=|
T Consensus       144 v~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G-----~QDTL~~~~-gR~yf~~CyIeG~VD  217 (359)
T PLN02634        144 VTVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYG-----AQDTLCDDA-GRHYFKECYIEGSID  217 (359)
T ss_pred             EEEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEec-----ccceeeeCC-CCEEEEeeEEccccc
Confidence            33456789999999998842         122 22357889999999998     455554332 357788999886555


Q ss_pred             eEEeCCCceeEEEEEEEEcCC---CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          336 CVSIQTGCSNVYVHNVNCGPG---HGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       336 ~Iai~sg~~nV~I~n~~~~~g---~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      =|. +.  -...++||++..-   .| .|-..++. ....-.-..|.||++.+.
T Consensus       218 FIF-G~--g~a~Fe~C~I~s~~~~~g-~ITA~~R~-~~~~~~GfvF~~C~vtg~  266 (359)
T PLN02634        218 FIF-GN--GRSMYKDCELHSIASRFG-SIAAHGRT-CPEEKTGFAFVGCRVTGT  266 (359)
T ss_pred             EEc-CC--ceEEEeccEEEEecCCCc-EEEeCCCC-CCCCCcEEEEEcCEEcCC
Confidence            442 33  4668999988752   23 22222221 122235789999999764

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=97.98  E-value=5.7e-05  Score=70.60  Aligned_cols=112  Identities=28%  Similarity=0.397  Sum_probs=75.3

Q ss_pred             eeEEEece----EEecCCCCeEEee-cCccEEEEeEEEeCC-----------CCCCCCCceeecCcccEEEEeeEEeeC-
Q 015319          271 FNVTVTGI----TIQNSPQCHLKFD-NCIGVVVHDVSVSSP-----------GDSPNTDGIHLQNSKDVLIHTSNLACG-  333 (409)
Q Consensus       271 ~nv~I~gv----ti~ns~~~~i~~~-~~~nV~I~n~~I~s~-----------~~~~n~DGI~l~~s~nV~I~n~~i~~g-  333 (409)
                      .|.+|.|.    +|.+   +++.+. .++||.|+|++|+..           ......|+|.+..++||.|++|.+..+ 
T Consensus        21 snkTi~G~g~~~~i~~---~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~   97 (200)
T PF00544_consen   21 SNKTIIGIGAGATIIG---GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGN   97 (200)
T ss_dssp             SSEEEEEETTTTEEES---SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETT
T ss_pred             CCcEEEEccCCeEEEC---ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccc
Confidence            45566653    3333   355555 788888888888871           223578999999999999999998765 


Q ss_pred             --------CCeEEeCCCceeEEEEEEEEcCC-CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          334 --------DDCVSIQTGCSNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       334 --------DD~Iai~sg~~nV~I~n~~~~~g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                              |..+.++.++.+|+|.+|.+... .+.-+|+......... .+|++.+|.+.++
T Consensus        98 ~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~  158 (200)
T PF00544_consen   98 FECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT  158 (200)
T ss_dssp             S-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred             cccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence                    55688888899999999999873 3566776322222334 8999999999865

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=97.93  E-value=0.0005  Score=70.64  Aligned_cols=26  Identities=12%  Similarity=0.184  Sum_probs=19.0

Q ss_pred             cHHHHHHHHHHHhhcCCcEEEECCceEEE
Q 015319          125 DTKAFEAAWAAACKVEASIMVVPAESVFL  153 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~  153 (409)
                      +.++||+|++.|..  |.+|++..| +|.
T Consensus         3 s~~~lq~Ai~~a~p--GD~I~L~~G-ty~   28 (425)
T PF14592_consen    3 SVAELQSAIDNAKP--GDTIVLADG-TYK   28 (425)
T ss_dssp             SHHHHHHHHHH--T--T-EEEE-SE-EEE
T ss_pred             CHHHHHHHHHhCCC--CCEEEECCc-eee
Confidence            57899999987653  999999999 885

>PLN02304 probable pectinesterase

Probab=97.80  E-value=0.0054  Score=62.43  Aligned_cols=111  Identities=10%  Similarity=0.048  Sum_probs=69.2

Q ss_pred             EEEEeeeeEEEeceEEecCCC---------CeEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCC
Q 015319          265 LRFYGSFNVTVTGITIQNSPQ---------CHLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGD  334 (409)
Q Consensus       265 i~~~~~~nv~I~gvti~ns~~---------~~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gD  334 (409)
                      -....++++..++|+|+|+..         ..+- ....+...+.+|.|..     .+|=+.... -.-..+||+|...=
T Consensus       156 Tv~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G-----~QDTLy~~~-gR~Yf~~CyIeG~V  229 (379)
T PLN02304        156 SVQVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFG-----AQDTLHDDR-GRHYFKDCYIQGSI  229 (379)
T ss_pred             EEEEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEec-----ccceeEeCC-CCEEEEeeEEcccc
Confidence            344467889999999998741         1222 2458889999999998     455554433 35778899998654


Q ss_pred             CeEEeCCCceeEEEEEEEEcC-C----------CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          335 DCVSIQTGCSNVYVHNVNCGP-G----------HGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       335 D~Iai~sg~~nV~I~n~~~~~-g----------~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      |=| ++.  -...++||.+.. .          .| .|-..++. ....-.-..|.||++.+.
T Consensus       230 DFI-FG~--g~A~Fe~C~I~s~~~~~~~g~~~~~G-~ITA~~Rt-~~~~~~GfvF~~C~itg~  287 (379)
T PLN02304        230 DFI-FGD--ARSLYENCRLISMANPVPPGSKSING-AVTAHGRT-SKDENTGFSFVNCTIGGT  287 (379)
T ss_pred             cEE-ecc--ceEEEEccEEEEecCCcccccccCce-EEEecCCC-CCCCCceEEEECCEEccC
Confidence            544 233  456888888764 1          12 12111111 123345789999999763

>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional

Probab=97.78  E-value=0.00027  Score=68.57  Aligned_cols=58  Identities=19%  Similarity=0.327  Sum_probs=40.1

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEE-eC-CcccCCCccccceEEEecceEEc
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFL-VG-PMSFSGPYCQANIIFQLDGTIIA  178 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~-~~-~i~l~g~~~~s~~~l~l~Gtl~~  178 (409)
                      ...++++.||-.     .|--++|..|+.+     +.+|++|+|-+-. +. .+.+     ....+|.+.|.|+.
T Consensus        31 ~~~~vni~dy~~-----~dwiasfkqaf~e-----~qtvvvpagl~cenint~ifi-----p~gktl~v~g~l~g   90 (464)
T PRK10123         31 ARQSVNINDYNP-----HDWIASFKQAFSE-----GQTVVVPAGLVCDNINTGIFI-----PPGKTLHILGSLRG   90 (464)
T ss_pred             CCceeehhhcCc-----ccHHHHHHHHhcc-----CcEEEecCccEecccccceEe-----CCCCeEEEEEEeec
Confidence            456899999975     5778889998865     7899999993221 22 2333     45677777776654

>PLN02682 pectinesterase family protein

Probab=97.64  E-value=0.017  Score=58.82  Aligned_cols=112  Identities=7%  Similarity=0.001  Sum_probs=71.5

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC---------eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC---------HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG  333 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~---------~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g  333 (409)
                      +-....++++..+||+|+|+...         .+- ....+...+.+|+|..     ..|=+.... ..-..+||+|...
T Consensus       156 AT~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G-----~QDTLy~~~-gRqyf~~C~IeG~  229 (369)
T PLN02682        156 ATFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLG-----AQDTLYDHL-GRHYFKDCYIEGS  229 (369)
T ss_pred             eEEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEec-----cccceEECC-CCEEEEeeEEccc
Confidence            44556778999999999997421         222 2458889999999998     455554432 3568889999865


Q ss_pred             CCeEEeCCCceeEEEEEEEEcC---CCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          334 DDCVSIQTGCSNVYVHNVNCGP---GHGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       334 DD~Iai~sg~~nV~I~n~~~~~---g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      =|=| ++.  -...+++|++..   ..| .|-..++. ....-.-..|.||++.+.
T Consensus       230 VDFI-FG~--g~a~Fe~C~I~s~~~~~G-~ITA~~r~-~~~~~~GfvF~~C~itg~  280 (369)
T PLN02682        230 VDFI-FGN--GLSLYEGCHLHAIARNFG-ALTAQKRQ-SVLEDTGFSFVNCKVTGS  280 (369)
T ss_pred             ccEE-ecC--ceEEEEccEEEEecCCCe-EEecCCCC-CCCCCceEEEEeeEecCC
Confidence            4544 233  577899998874   223 22222211 112235788999999864

>PLN02480 Probable pectinesterase

Probab=97.62  E-value=0.0031  Score=63.58  Aligned_cols=46  Identities=13%  Similarity=0.074  Sum_probs=28.2

Q ss_pred             ccHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEec
Q 015319          124 DDTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD  173 (409)
Q Consensus       124 DdT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~  173 (409)
                      .|-.-||+||++|....  --+|+|.+| +|. ..+.+..  -+.+++|+.+
T Consensus        58 g~f~TIQ~AIdaap~~~~~~~~I~Ik~G-vY~-E~V~I~~--~kp~ItL~G~  105 (343)
T PLN02480         58 GDFTSVQSAIDAVPVGNSEWIIVHLRKG-VYR-EKVHIPE--NKPFIFMRGN  105 (343)
T ss_pred             CCcccHHHHHhhCccCCCceEEEEEcCc-EEE-EEEEECC--CCceEEEEec
Confidence            47889999999876532  125889999 775 3444421  0344555444

>PRK10531 acyl-CoA thioesterase; Provisional

Probab=97.58  E-value=0.035  Score=57.32  Aligned_cols=114  Identities=11%  Similarity=0.088  Sum_probs=70.7

Q ss_pred             eeEEEEeeeeEEEeceEEecCCCC--------eEE-eecCccEEEEeEEEeCCCCCCCCCceeec-----------Cccc
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQC--------HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-----------NSKD  322 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~~--------~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-----------~s~n  322 (409)
                      .+..+..++++++++|+|+|+-..        .+- ....+.+.+.+|+|...     .|=+...           ....
T Consensus       198 SATv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~-----QDTLy~~~~~~~~~~~~~~~gR  272 (422)
T PRK10531        198 SAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGR-----QDTFFVTNSGVQNRLETDRQPR  272 (422)
T ss_pred             eEEEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecc-----cceeeecccccccccccccccc
Confidence            355667899999999999998531        222 34688899999999984     3333331           1235


Q ss_pred             EEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC-CC----eeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          323 VLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP-GH----GISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       323 V~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~-g~----GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      -..++|+|...=|=| ++.  -..+|+||++.. ..    .-.|--...  ....-.-..|.||+|...
T Consensus       273 qYf~~CyIeG~VDFI-FG~--g~AvFenC~I~s~~~~~~~~g~ITA~~t--~~~~~~GfvF~nCrit~~  336 (422)
T PRK10531        273 TYVKNSYIEGDVDFV-FGR--GAVVFDNTEFRVVNSRTQQEAYVFAPAT--LPNIYYGFLAINSRFNAS  336 (422)
T ss_pred             EEEEeCEEeecccEE-ccC--ceEEEEcCEEEEecCCCCCceEEEecCC--CCCCCCEEEEECCEEecC
Confidence            788899988654544 233  467788887765 11    111211111  112234678888888864

>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3

Probab=97.56  E-value=0.0038  Score=65.42  Aligned_cols=130  Identities=17%  Similarity=0.085  Sum_probs=74.2

Q ss_pred             eEEEeceEEecCCCCe-EEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCC-----cee
Q 015319          272 NVTVTGITIQNSPQCH-LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG-----CSN  345 (409)
Q Consensus       272 nv~I~gvti~ns~~~~-i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg-----~~n  345 (409)
                      +..|++.++.-+-+|. =-+.-|++-+|+||.+..     |+|+|.+.. .++.|++|++.....+=.++-|     .+|
T Consensus       357 ~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~-----nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isn  430 (582)
T PF03718_consen  357 SMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV-----NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISN  430 (582)
T ss_dssp             EEEEEEEEEE---CTT----B--TT-EEEEEEEEE-----SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEE
T ss_pred             cceeeceeeeeeEEeccCCccccCCCeeeeeEEEe-----cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCc
Confidence            5788999998765543 224456889999999999     899998875 6999999999875433223333     678


Q ss_pred             EEEEEEEEcC----------CCeeEEEecCC----CC----CCCcEEEEEEEeEEEeccc-ceEEEEeecCCCC-eEEEE
Q 015319          346 VYVHNVNCGP----------GHGISIGSLGK----DN----TKACVSNITVRDVMMHNTM-NGVRIKTWQVMIP-SGTQC  405 (409)
Q Consensus       346 V~I~n~~~~~----------g~GisIGs~g~----~~----~~~~v~nI~v~n~~~~~~~-~Gi~Ikt~~G~~g-~v~~~  405 (409)
                      |.|+|+.+-.          ..+|---+..-    +.    ....|++++|+|+++++.. .-+||+--+.... .++|+
T Consensus       431 v~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plqn~~nl~ikN~  510 (582)
T PF03718_consen  431 VSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQNYDNLVIKNV  510 (582)
T ss_dssp             EEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SEEEEEEEEEEE
T ss_pred             eEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecCCCcceEEEEe
Confidence            8898886543          12332221110    11    1234789999999999854 5566666554432 35555


Q ss_pred             Ee
Q 015319          406 YN  407 (409)
Q Consensus       406 ~~  407 (409)
                      +.
T Consensus       511 ~~  512 (582)
T PF03718_consen  511 HF  512 (582)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.

>PLN02708 Probable pectinesterase/pectinesterase inhibitor

Probab=97.46  E-value=0.0094  Score=63.83  Aligned_cols=82  Identities=13%  Similarity=0.082  Sum_probs=48.5

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      +-.....+++..+|++|+|...-    .+-+ ...+.+.+.+|.|..     ..|=+..... .-..++|+|...=|=| 
T Consensus       323 aT~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G-----~QDTLy~~~~-rq~y~~C~I~GtVDFI-  395 (553)
T PLN02708        323 ATVGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLG-----NQDTLYAHSL-RQFYKSCRIQGNVDFI-  395 (553)
T ss_pred             EEEEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeee-----ccccceeCCC-ceEEEeeEEeecCCEE-
Confidence            33445667888888888887532    2222 357788888888887     3444444332 3456777776543333 


Q ss_pred             eCCCceeEEEEEEEEc
Q 015319          339 IQTGCSNVYVHNVNCG  354 (409)
Q Consensus       339 i~sg~~nV~I~n~~~~  354 (409)
                      ++.  -.++|+||++.
T Consensus       396 FG~--a~avfq~c~i~  409 (553)
T PLN02708        396 FGN--SAAVFQDCAIL  409 (553)
T ss_pred             ecC--ceEEEEccEEE
Confidence            222  35566666654

>smart00656 Amb_all Amb_all domain

Probab=97.45  E-value=0.005  Score=57.08  Aligned_cols=129  Identities=15%  Similarity=0.102  Sum_probs=89.5

Q ss_pred             eeEEEEeeeeEEEeceEEecCCC------CeEEeecCccEEEEeEEEeCCC----CCCCCCce-eec-CcccEEEEeeEE
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQ------CHLKFDNCIGVVVHDVSVSSPG----DSPNTDGI-HLQ-NSKDVLIHTSNL  330 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~------~~i~~~~~~nV~I~n~~I~s~~----~~~n~DGI-~l~-~s~nV~I~n~~i  330 (409)
                      ..|.+..++||.|++++|++...      .+|.+..+++|.|+.|++....    .....||. ++. .+.+|+|.+|.|
T Consensus        32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f  111 (190)
T smart00656       32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF  111 (190)
T ss_pred             eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence            35777789999999999998643      4688999999999999999841    11225664 443 578999999999


Q ss_pred             eeCCCeEEeCCCce-------eEEEEEEEEcCC--CeeEEEecCCCCCCCcEEEEEEEeEEEeccc-ceEEEEeecCCCC
Q 015319          331 ACGDDCVSIQTGCS-------NVYVHNVNCGPG--HGISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKTWQVMIP  400 (409)
Q Consensus       331 ~~gDD~Iai~sg~~-------nV~I~n~~~~~g--~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~-~Gi~Ikt~~G~~g  400 (409)
                      ....-+.-++.+.+       +|++.+|.+...  +.=.+.       .+   .+.+-|+++.+.. .++.  .-.++.-
T Consensus       112 ~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-------~g---~~hv~NN~~~n~~~~~~~--~~~~~~v  179 (190)
T smart00656      112 HNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-------FG---YVHVYNNYYTGWTSYAIG--GRMGATI  179 (190)
T ss_pred             ecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-------CC---EEEEEeeEEeCcccEeEe--cCCCcEE
Confidence            98777888887532       699999988762  222221       11   5778888887754 3333  3344444


Q ss_pred             eEE
Q 015319          401 SGT  403 (409)
Q Consensus       401 ~v~  403 (409)
                      .++
T Consensus       180 ~~E  182 (190)
T smart00656      180 LSE  182 (190)
T ss_pred             EEE
Confidence            444

>PLN02773 pectinesterase

Probab=97.39  E-value=0.031  Score=55.85  Aligned_cols=43  Identities=9%  Similarity=-0.078  Sum_probs=28.7

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eE-EeecCccEEEEeEEEeCC
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HL-KFDNCIGVVVHDVSVSSP  306 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i-~~~~~~nV~I~n~~I~s~  306 (409)
                      +-.+..++++.+++|+|+|...-    .+ .....+.+.+.+|+|...
T Consensus        95 aTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~  142 (317)
T PLN02773         95 GTVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGW  142 (317)
T ss_pred             eEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecc
Confidence            33455678888899999887421    12 223567788888888873

>PLN02506 putative pectinesterase/pectinesterase inhibitor

Probab=97.35  E-value=0.011  Score=63.01  Aligned_cols=82  Identities=10%  Similarity=0.002  Sum_probs=47.9

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      +-....++++..+|++|+|....    .+- ....+.+.+.+|.|..     ..|=+..... .-..++|+|...=|=| 
T Consensus       312 aT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G-----~QDTLy~~~~-rqyy~~C~I~GtVDFI-  384 (537)
T PLN02506        312 ATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEG-----YQDTLYAHSL-RQFYRECEIYGTIDFI-  384 (537)
T ss_pred             eEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeec-----ccccceecCC-ceEEEeeEEecccceE-
Confidence            34455778888889999887422    222 2357888888888887     3444433332 3466666666543322 


Q ss_pred             eCCCceeEEEEEEEEc
Q 015319          339 IQTGCSNVYVHNVNCG  354 (409)
Q Consensus       339 i~sg~~nV~I~n~~~~  354 (409)
                      ++  .-..+|+||.+.
T Consensus       385 FG--~a~avfq~C~i~  398 (537)
T PLN02506        385 FG--NGAAVLQNCKIY  398 (537)
T ss_pred             cc--CceeEEeccEEE
Confidence            22  234566666655

>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes

Probab=97.35  E-value=0.0012  Score=63.38  Aligned_cols=104  Identities=21%  Similarity=0.354  Sum_probs=49.5

Q ss_pred             eeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeC-CCCCCCCCceeecCcccEEEEeeEEeeCC-----------CeE
Q 015319          270 SFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSS-PGDSPNTDGIHLQNSKDVLIHTSNLACGD-----------DCV  337 (409)
Q Consensus       270 ~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s-~~~~~n~DGI~l~~s~nV~I~n~~i~~gD-----------D~I  337 (409)
                      ++|++|++..|+....    |..|++++++|++|.. ....        ..|++|+++|+.+ .||           |++
T Consensus        78 s~~i~m~d~~i~apK~----fR~~~~i~L~nv~~~~A~Et~--------W~c~~i~l~nv~~-~gdYf~m~s~ni~id~l  144 (277)
T PF12541_consen   78 SNNITMKDSVIQAPKM----FRECSNITLENVDIPDADETL--------WNCRGIKLKNVQA-NGDYFFMNSENIYIDNL  144 (277)
T ss_pred             eCCEEEEeeeccCchH----hhcccCcEEEeeEeCCCcccC--------EEeCCeEEEeEEE-eceEeeeeccceEEece
Confidence            3444444444443321    3456666666666632 2222        2356666666666 332           112


Q ss_pred             EeC-----CCceeEEEEEEEEcCCC------eeEEE-ec--CCCCCCCcEEEEEEEeEEEeccc
Q 015319          338 SIQ-----TGCSNVYVHNVNCGPGH------GISIG-SL--GKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       338 ai~-----sg~~nV~I~n~~~~~g~------GisIG-s~--g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      .+.     .+++||.|+|+++....      -+.+. |.  |.| -+=.-+||++.||++.++.
T Consensus       145 ~~~GnY~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i~GEY-LgW~SkNltliNC~I~g~Q  207 (277)
T PF12541_consen  145 VLDGNYSFQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVINGEY-LGWNSKNLTLINCTIEGTQ  207 (277)
T ss_pred             EEeCCEEeeceeeEEEEccEEecccccccCCceEEEcceEeeeE-EEEEcCCeEEEEeEEeccC
Confidence            111     24788888888766521      13321 00  000 0001357788888777653

Proteins in this family are typically between 281 and 297 amino acids in length.

>PLN02468 putative pectinesterase/pectinesterase inhibitor

Probab=97.33  E-value=0.013  Score=62.87  Aligned_cols=46  Identities=17%  Similarity=0.232  Sum_probs=29.5

Q ss_pred             cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++.+..  .-+|+|.+| +|.- .+.+.-.  +.+++|+.+|
T Consensus       269 ~f~tI~~Av~a~p~~~~~~~vI~ik~G-vY~E-~V~i~~~--k~~i~~~G~g  316 (565)
T PLN02468        269 KYKTISEALKDVPEKSEKRTIIYVKKG-VYFE-NVRVEKK--KWNVVMVGDG  316 (565)
T ss_pred             CccCHHHHHHhchhcCCCcEEEEEeCC-ceEE-EEEecCC--CCeEEEEecC
Confidence            5678999999887643  348999999 6742 2322111  3466666665

>PLN02301 pectinesterase/pectinesterase inhibitor

Probab=97.33  E-value=0.015  Score=62.08  Aligned_cols=46  Identities=17%  Similarity=0.188  Sum_probs=29.5

Q ss_pred             cHHHHHHHHHHHhhcCC--cEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVEA--SIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~gg--~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++.+...  -+|+|.+| +|.- .+.+.-  -+.+++|+.+|
T Consensus       247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E-~V~i~~--~k~~i~l~G~g  294 (548)
T PLN02301        247 KYKTVKEAVASAPDNSKTRYVIYVKKG-TYKE-NVEIGK--KKKNLMLVGDG  294 (548)
T ss_pred             CcccHHHHHHhhhhcCCceEEEEEeCc-eeeE-EEEecC--CCceEEEEecC
Confidence            67889999998877532  37999999 6742 222211  03466665554

>PLN02665 pectinesterase family protein

Probab=97.32  E-value=0.025  Score=57.51  Aligned_cols=46  Identities=9%  Similarity=0.023  Sum_probs=30.3

Q ss_pred             cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++....  .-+|+|.+| +|.- .+.++-  -+.+++|+.++
T Consensus        79 df~TIq~AIdaiP~~~~~r~vI~Ik~G-vY~E-kV~Ip~--~kp~Itl~G~~  126 (366)
T PLN02665         79 DFKTITDAIKSIPAGNTQRVIIDIGPG-EYNE-KITIDR--SKPFVTLYGSP  126 (366)
T ss_pred             CccCHHHHHhhCcccCCceEEEEEeCc-EEEE-EEEecC--CCCEEEEEecC
Confidence            5778999999877643  236889999 7752 333311  15677777664

>PLN02488 probable pectinesterase/pectinesterase inhibitor

Probab=97.30  E-value=0.03  Score=59.03  Aligned_cols=47  Identities=19%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             ccHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          124 DDTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       124 DdT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      -|-.-||+||+++.+..  .-+|+|.+| +|.- .+.+..  -+.+++|..+|
T Consensus       207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~--~k~nItliGdg  255 (509)
T PLN02488        207 GKYNTVNAAIAAAPEHSRKRFVIYIKTG-VYDE-IVRIGS--TKPNLTLIGDG  255 (509)
T ss_pred             CCccCHHHHHHhchhcCCCcEEEEEeCC-eeEE-EEEecC--CCccEEEEecC
Confidence            36778999999887643  347999999 7753 222210  14566666665

>PLN02432 putative pectinesterase

Probab=97.29  E-value=0.03  Score=55.33  Aligned_cols=46  Identities=11%  Similarity=0.081  Sum_probs=29.4

Q ss_pred             cHHHHHHHHHHHhhcCC--cEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVEA--SIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~gg--~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++.....  -+|+|.+| +|. ..|.++-  -+.+++|+.++
T Consensus        22 ~f~TIq~Aida~p~~~~~~~~I~I~~G-~Y~-E~V~ip~--~k~~itl~G~~   69 (293)
T PLN02432         22 DFRKIQDAIDAVPSNNSQLVFIWVKPG-IYR-EKVVVPA--DKPFITLSGTQ   69 (293)
T ss_pred             CccCHHHHHhhccccCCceEEEEEeCc-eeE-EEEEEec--cCceEEEEEcC
Confidence            57889999998876432  47999999 773 2333311  14566665553

>PLN02313 Pectinesterase/pectinesterase inhibitor

Probab=97.28  E-value=0.017  Score=62.37  Aligned_cols=81  Identities=9%  Similarity=0.030  Sum_probs=47.4

Q ss_pred             EEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEe
Q 015319          265 LRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSI  339 (409)
Q Consensus       265 i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai  339 (409)
                      -.....+++..+|++|+|....    .+-+ ...+...+.+|.|..     .+|=+..... .-..++|+|...=|=|. 
T Consensus       356 t~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g-----~QDTLy~~~~-rq~y~~c~I~GtvDFIF-  428 (587)
T PLN02313        356 TVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFA-----YQDTLYVHSN-RQFFVKCHITGTVDFIF-  428 (587)
T ss_pred             EEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEec-----ccchhccCCC-cEEEEeeEEeeccceec-
Confidence            3344667888888888887432    2222 357778888888887     3444444332 33666676665434331 


Q ss_pred             CCCceeEEEEEEEEc
Q 015319          340 QTGCSNVYVHNVNCG  354 (409)
Q Consensus       340 ~sg~~nV~I~n~~~~  354 (409)
                        |.-.++|+||++.
T Consensus       429 --G~a~avfq~c~i~  441 (587)
T PLN02313        429 --GNAAAVLQDCDIN  441 (587)
T ss_pred             --cceeEEEEccEEE
Confidence              2345566666655

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=97.26  E-value=0.0092  Score=55.24  Aligned_cols=116  Identities=23%  Similarity=0.351  Sum_probs=77.2

Q ss_pred             EEEeceEEecCC------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeE
Q 015319          273 VTVTGITIQNSP------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNV  346 (409)
Q Consensus       273 v~I~gvti~ns~------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV  346 (409)
                      +.|++++|....      ..++.+..|+++.|+||++..    .+.+|+.+..+....+.+....   .++.+..+..++
T Consensus        94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  166 (225)
T PF12708_consen   94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV  166 (225)
T ss_dssp             EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred             EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence            346666666443      234888889999999999988    4778888875555555444332   123344445777


Q ss_pred             EEEEEEEcCC-CeeEEEecCCCCCCCcEEEEEEEeEEEec-ccceEEEEeecCCCCeEEEEEe
Q 015319          347 YVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHN-TMNGVRIKTWQVMIPSGTQCYN  407 (409)
Q Consensus       347 ~I~n~~~~~g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~-~~~Gi~Ikt~~G~~g~v~~~~~  407 (409)
                      .+.||.+..+ .|+..+.          ++++++||++.+ ...||.+.....  -.++|+..
T Consensus       167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~~--~~i~n~~i  217 (225)
T PF12708_consen  167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGSN--IIISNNTI  217 (225)
T ss_dssp             EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECSE--EEEEEEEE
T ss_pred             EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCeE--EEEEeEEE
Confidence            7888887774 4643333          699999999998 779998887543  45666554

...

>PLN02713 Probable pectinesterase/pectinesterase inhibitor

Probab=97.25  E-value=0.018  Score=61.81  Aligned_cols=46  Identities=22%  Similarity=0.175  Sum_probs=28.9

Q ss_pred             cHHHHHHHHHHHhhcC-----CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVE-----ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~g-----g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++.+..     --+|+|.+| +|.- .|.++-  -+.+++|+.+|
T Consensus       261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G-~Y~E-~V~i~~--~k~~i~l~G~g  311 (566)
T PLN02713        261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAG-VYEE-YVSIPK--NKKYLMMIGDG  311 (566)
T ss_pred             CCCCHHHHHHhhhcccCCCCceEEEEEcCc-EEEE-EEEecC--CCceEEEEecC
Confidence            5778999999887641     247999999 7742 222211  14566666554

>PLN02416 probable pectinesterase/pectinesterase inhibitor

Probab=97.23  E-value=0.021  Score=61.10  Aligned_cols=80  Identities=13%  Similarity=0.045  Sum_probs=43.2

Q ss_pred             EEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC
Q 015319          266 RFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ  340 (409)
Q Consensus       266 ~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~  340 (409)
                      .....+++..+||+|+|....    .+- ....+.+.+.+|.|...     .|=+.... ..-..++|+|...=|=| ++
T Consensus       312 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG  384 (541)
T PLN02416        312 LAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGY-----QDTLYVHS-FRQFYRECDIYGTIDYI-FG  384 (541)
T ss_pred             EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecc-----cchhccCC-CceEEEeeEEeecccee-ec
Confidence            334567888888888877432    122 23567788888888873     33333322 23455666665433322 11


Q ss_pred             CCceeEEEEEEEEc
Q 015319          341 TGCSNVYVHNVNCG  354 (409)
Q Consensus       341 sg~~nV~I~n~~~~  354 (409)
                        .-..+|+||++.
T Consensus       385 --~a~avfq~c~i~  396 (541)
T PLN02416        385 --NAAVVFQACNIV  396 (541)
T ss_pred             --cceEEEeccEEE
Confidence              234455555543

>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional

Probab=97.23  E-value=0.023  Score=60.72  Aligned_cols=43  Identities=9%  Similarity=-0.056  Sum_probs=29.1

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCC
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSP  306 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~  306 (409)
                      +-.....+++..++++|+|....    .+- -...+...+.+|.|...
T Consensus       306 aT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gy  353 (538)
T PLN03043        306 STFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGY  353 (538)
T ss_pred             eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEecc
Confidence            33445668888899999887432    232 24577788888888873

>PLN02170 probable pectinesterase/pectinesterase inhibitor

Probab=97.22  E-value=0.028  Score=59.63  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=29.2

Q ss_pred             cHHHHHHHHHHHhhc---CCcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKV---EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~---gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++...   ..-+|+|.+| +|.- .+.++.  -+.+++|+.+|
T Consensus       236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~E-~V~I~~--~k~nItl~G~g  284 (529)
T PLN02170        236 THKTIGEALLSTSLESGGGRTVIYLKAG-TYHE-NLNIPT--KQKNVMLVGDG  284 (529)
T ss_pred             chhhHHHHHHhcccccCCceEEEEEeCC-eeEE-EEecCC--CCceEEEEEcC
Confidence            578899999875432   2357999999 6752 233321  14577776665

>PLN02217 probable pectinesterase/pectinesterase inhibitor

Probab=97.20  E-value=0.022  Score=62.01  Aligned_cols=28  Identities=14%  Similarity=0.171  Sum_probs=21.8

Q ss_pred             cHHHHHHHHHHHhhcC--CcEEEECCceEEE
Q 015319          125 DTKAFEAAWAAACKVE--ASIMVVPAESVFL  153 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~  153 (409)
                      |-.-||+||+++.+..  .-+|+|.+| +|.
T Consensus       261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~G-vY~  290 (670)
T PLN02217        261 QYKTINEALNFVPKKKNTTFVVHIKAG-IYK  290 (670)
T ss_pred             CccCHHHHHHhccccCCceEEEEEeCC-ceE
Confidence            6788999999877643  347999999 774

>PLN02933 Probable pectinesterase/pectinesterase inhibitor

Probab=97.19  E-value=0.031  Score=59.41  Aligned_cols=46  Identities=17%  Similarity=0.231  Sum_probs=30.4

Q ss_pred             cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++.+..  .-+|+|.+| +|. ..+.++-  -+.+++|+.+|
T Consensus       229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~-E~V~I~~--~k~~itl~G~g  276 (530)
T PLN02933        229 NFTTINEAVSAAPNSSETRFIIYIKGG-EYF-ENVELPK--KKTMIMFIGDG  276 (530)
T ss_pred             CccCHHHHHHhchhcCCCcEEEEEcCc-eEE-EEEEecC--CCceEEEEEcC
Confidence            5778999999887643  347999999 675 2333321  14566666665

>PLN02745 Putative pectinesterase/pectinesterase inhibitor

Probab=97.19  E-value=0.029  Score=60.64  Aligned_cols=83  Identities=7%  Similarity=-0.038  Sum_probs=48.2

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      +-.....+++..++++|+|...-    .+- ....+...+.+|.|..     ..|=+.... ..-..++|+|...=|=| 
T Consensus       365 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFI-  437 (596)
T PLN02745        365 ATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEG-----YQDTLYAQT-HRQFYRSCVITGTIDFI-  437 (596)
T ss_pred             EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEee-----cccccccCC-CcEEEEeeEEEeeccEE-
Confidence            33444677888888888886421    222 2457888888888887     344443332 23566777776543422 


Q ss_pred             eCCCceeEEEEEEEEcC
Q 015319          339 IQTGCSNVYVHNVNCGP  355 (409)
Q Consensus       339 i~sg~~nV~I~n~~~~~  355 (409)
                      ++.  -..+|+||++..
T Consensus       438 FG~--a~avf~~C~i~~  452 (596)
T PLN02745        438 FGD--AAAIFQNCLIFV  452 (596)
T ss_pred             ecc--eeEEEEecEEEE
Confidence            222  455666666543

>PLN02197 pectinesterase

Probab=97.19  E-value=0.022  Score=61.36  Aligned_cols=80  Identities=13%  Similarity=0.047  Sum_probs=47.4

Q ss_pred             EEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC
Q 015319          266 RFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ  340 (409)
Q Consensus       266 ~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~  340 (409)
                      .....+++..++++|+|....    .+-+ ...+...+.+|.|..     .+|=+..... .-..++|+|...=|=| ++
T Consensus       359 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G-----yQDTLy~~~~-Rqyy~~C~I~GtVDFI-FG  431 (588)
T PLN02197        359 VQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDG-----YQDTLYVNNG-RQFYRNIVVSGTVDFI-FG  431 (588)
T ss_pred             EEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEe-----cCcceEecCC-CEEEEeeEEEeccccc-cc
Confidence            444677888888888886432    2222 357888888888888     4455544432 3466777776543322 12


Q ss_pred             CCceeEEEEEEEEc
Q 015319          341 TGCSNVYVHNVNCG  354 (409)
Q Consensus       341 sg~~nV~I~n~~~~  354 (409)
                      .  -..+|+||++.
T Consensus       432 ~--a~avfq~C~i~  443 (588)
T PLN02197        432 K--SATVIQNSLIV  443 (588)
T ss_pred             c--eeeeeecCEEE
Confidence            2  23566666554

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4

Probab=97.17  E-value=0.0048  Score=57.64  Aligned_cols=92  Identities=24%  Similarity=0.291  Sum_probs=63.8

Q ss_pred             eEEEE-eeeeEEEeceEEec---------------CCCCeEEeecCccEEEEeEEEeCCCC---CCCCCc-eeec-Cccc
Q 015319          264 ALRFY-GSFNVTVTGITIQN---------------SPQCHLKFDNCIGVVVHDVSVSSPGD---SPNTDG-IHLQ-NSKD  322 (409)
Q Consensus       264 ~i~~~-~~~nv~I~gvti~n---------------s~~~~i~~~~~~nV~I~n~~I~s~~~---~~n~DG-I~l~-~s~n  322 (409)
                      .+.+. +++||.|++++|.+               .....+.+..+++|.|+.|++.....   ....|| +++. .+.+
T Consensus        38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~  117 (200)
T PF00544_consen   38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDN  117 (200)
T ss_dssp             EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEE
T ss_pred             eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCce
Confidence            34444 89999999999998               23455899999999999999998511   112555 5664 5789


Q ss_pred             EEEEeeEEeeCCCeEEeCCC-------ceeEEEEEEEEcC
Q 015319          323 VLIHTSNLACGDDCVSIQTG-------CSNVYVHNVNCGP  355 (409)
Q Consensus       323 V~I~n~~i~~gDD~Iai~sg-------~~nV~I~n~~~~~  355 (409)
                      |||.+|.|...+.+..++..       ..+|++.+|.+..
T Consensus       118 vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~  157 (200)
T PF00544_consen  118 VTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFAN  157 (200)
T ss_dssp             EEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEE
T ss_pred             EEEEchhccccccccccCCCCCccccCCceEEEEeEEECc
Confidence            99999999876555555442       3689999888765

2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....

>PLN02497 probable pectinesterase

Probab=97.17  E-value=0.019  Score=57.58  Aligned_cols=107  Identities=12%  Similarity=0.103  Sum_probs=68.2

Q ss_pred             EeeeeEEEeceEEecCCCC-----------eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319          268 YGSFNVTVTGITIQNSPQC-----------HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD  335 (409)
Q Consensus       268 ~~~~nv~I~gvti~ns~~~-----------~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD  335 (409)
                      ..+++++++|++|+|+-..           .+- ....+...+.+|.|..     ..|=+.... ..-..+||+|...=|
T Consensus       112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G-----~QDTLy~~~-gRqyf~~C~IeG~VD  185 (331)
T PLN02497        112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAG-----VQDTLWDSD-GRHYFKRCTIQGAVD  185 (331)
T ss_pred             EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEec-----cccceeeCC-CcEEEEeCEEEeccc
Confidence            4677899999999998431           222 2357888999999998     444444332 356888999987655


Q ss_pred             eEEeCCCceeEEEEEEEEcC-C-------Ce-eEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          336 CVSIQTGCSNVYVHNVNCGP-G-------HG-ISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       336 ~Iai~sg~~nV~I~n~~~~~-g-------~G-isIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      =| ++.  -...|+||++.. .       .| |.--  ++. ....-.-..|.||++.+.
T Consensus       186 FI-FG~--g~a~Fe~C~I~s~~~~~~~~~~g~ITA~--~r~-~~~~~~GfvF~~C~itg~  239 (331)
T PLN02497        186 FI-FGS--GQSIYESCVIQVLGGQLEPGLAGFITAQ--GRT-NPYDANGFVFKNCLVYGT  239 (331)
T ss_pred             EE-ccC--ceEEEEccEEEEecCcCCCCCceEEEec--CCC-CCCCCceEEEEccEEccC
Confidence            44 233  467889998874 1       13 2221  211 122345679999999874

>PLN02201 probable pectinesterase/pectinesterase inhibitor

Probab=97.15  E-value=0.038  Score=58.73  Aligned_cols=47  Identities=19%  Similarity=0.191  Sum_probs=30.4

Q ss_pred             ccHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          124 DDTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       124 DdT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      -|-.-||+||+++.+..  .-+|+|.+| +|.- .+.++-  -+.+++|+.+|
T Consensus       216 G~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E-~V~I~~--~k~~i~l~G~g  264 (520)
T PLN02201        216 GNFTTIMDAVLAAPDYSTKRYVIYIKKG-VYLE-NVEIKK--KKWNIMMVGDG  264 (520)
T ss_pred             CCccCHHHHHHhchhcCCCcEEEEEeCc-eeEE-EEEecC--CCceEEEEecC
Confidence            36888999999887643  357999999 7742 233311  14566666664

>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3

Probab=97.13  E-value=0.015  Score=57.64  Aligned_cols=61  Identities=11%  Similarity=0.062  Sum_probs=34.6

Q ss_pred             EeeeeEEEeceEEecCCCC------eEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319          268 YGSFNVTVTGITIQNSPQC------HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD  335 (409)
Q Consensus       268 ~~~~nv~I~gvti~ns~~~------~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD  335 (409)
                      ...+++++++|+|+|....      .+. ...+.+.+.+|.|.+     ..|-+.... .....+||+|...-|
T Consensus        84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g-----~QDTL~~~~-~r~y~~~c~IeG~vD  150 (298)
T PF01095_consen   84 VNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLG-----YQDTLYANG-GRQYFKNCYIEGNVD  150 (298)
T ss_dssp             E-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE------STT-EEE-S-SEEEEES-EEEESEE
T ss_pred             ccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEcc-----ccceeeecc-ceeEEEeeEEEecCc
Confidence            3567888888999886422      133 356788899999988     455554443 245666666665433

1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....

>PLN02995 Probable pectinesterase/pectinesterase inhibitor

Probab=97.12  E-value=0.028  Score=60.02  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=30.1

Q ss_pred             cHHHHHHHHHHHhhc----CCcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKV----EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~----gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++...    +.-+|+|.+| +|.-. +.++  .-+.+++|+.+|
T Consensus       234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G-~Y~E~-V~i~--~~k~~i~l~G~g  283 (539)
T PLN02995        234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRG-IYQEN-INVR--LNNDDIMLVGDG  283 (539)
T ss_pred             CccCHHHHHHhcccccCCCceEEEEEeCC-EeEEE-EEec--CCCCcEEEEEcC
Confidence            678899999987642    2357999999 67532 2221  115677777765

>PLN02176 putative pectinesterase

Probab=97.11  E-value=0.064  Score=54.11  Aligned_cols=46  Identities=11%  Similarity=0.096  Sum_probs=31.3

Q ss_pred             cHHHHHHHHHHHhhcCC--cEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVEA--SIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~gg--~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++.+...  -+|+|.+| +|.- .|.++-  -+.+++|+.+|
T Consensus        50 df~TIq~AIdavP~~~~~~~~I~Ik~G-vY~E-kV~Ip~--~k~~vtl~G~g   97 (340)
T PLN02176         50 YFKTVQSAIDSIPLQNQNWIRILIQNG-IYRE-KVTIPK--EKGYIYMQGKG   97 (340)
T ss_pred             CccCHHHHHhhchhcCCceEEEEECCc-EEEE-EEEECC--CCccEEEEEcC
Confidence            57889999998876432  36899999 7753 333321  15678887775

>PLN02314 pectinesterase

Probab=97.08  E-value=0.036  Score=59.85  Aligned_cols=46  Identities=20%  Similarity=0.242  Sum_probs=29.3

Q ss_pred             cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++.+..  .-+|+|.+| +|.- .+.+.-  -+.|++|+.+|
T Consensus       289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-~Y~E-~V~i~~--~k~~i~l~G~g  336 (586)
T PLN02314        289 DVKTINEAVASIPKKSKSRFVIYVKEG-TYVE-NVLLDK--SKWNVMIYGDG  336 (586)
T ss_pred             CccCHHHHHhhccccCCceEEEEEcCc-eEEE-EEEecC--CCceEEEEecC
Confidence            5677999999876643  247999999 7752 222211  14566666665

>PLN02916 pectinesterase family protein

Probab=96.98  E-value=0.059  Score=56.95  Aligned_cols=46  Identities=24%  Similarity=0.348  Sum_probs=29.4

Q ss_pred             cHHHHHHHHHHHhhc-----CCcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKV-----EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~-----gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++.+.     ..-+|+|.+| +|.- .+.++.  -+.+++|+.+|
T Consensus       198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~G-vY~E-~V~I~~--~k~~i~l~G~g  248 (502)
T PLN02916        198 THRTINQALAALSRMGKSRTNRVIIYVKAG-VYNE-KVEIDR--HMKNVMFVGDG  248 (502)
T ss_pred             CccCHHHHHHhcccccCCCCceEEEEEeCc-eeeE-EEEecC--CCceEEEEecC
Confidence            677899999988752     1247999999 7752 233211  14566666665

>PLN02484 probable pectinesterase/pectinesterase inhibitor

Probab=96.97  E-value=0.05  Score=58.78  Aligned_cols=47  Identities=21%  Similarity=0.234  Sum_probs=31.4

Q ss_pred             cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++.+..  .-+|+|.+| +|.-..+.+.-  -+.+++|+.+|
T Consensus       283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~--~k~ni~l~G~g  331 (587)
T PLN02484        283 TFKTISEAIKKAPEHSSRRTIIYVKAG-RYEENNLKVGR--KKTNLMFIGDG  331 (587)
T ss_pred             CcccHHHHHHhccccCCCcEEEEEeCC-EEEEEEEEECC--CCceEEEEecC
Confidence            5778999999887643  347899999 67543333321  15677777765

>PLN02671 pectinesterase

Probab=96.90  E-value=0.09  Score=53.38  Aligned_cols=46  Identities=9%  Similarity=0.062  Sum_probs=29.4

Q ss_pred             cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++....  .-+|+|.+| +|.- .|.++.  -+.+++|+.+|
T Consensus        70 df~TIQ~AIdavP~~~~~~~~I~Ik~G-vY~E-kV~I~~--~k~~Itl~G~g  117 (359)
T PLN02671         70 DSLTVQGAVDMVPDYNSQRVKIYILPG-IYRE-KVLVPK--SKPYISFIGNE  117 (359)
T ss_pred             CccCHHHHHHhchhcCCccEEEEEeCc-eEEE-EEEECC--CCCeEEEEecC
Confidence            5778999999887643  347999999 7742 233311  14566665553

>PLN02990 Probable pectinesterase/pectinesterase inhibitor

Probab=96.70  E-value=0.13  Score=55.41  Aligned_cols=46  Identities=17%  Similarity=0.229  Sum_probs=30.2

Q ss_pred             cHHHHHHHHHHHhhcC--CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVE--ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~g--g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      |-.-||+||+++.+..  .-+|+|.+| +|.- .+.++.  -+.+++|+.+|
T Consensus       270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~G-vY~E-~V~i~~--~k~~i~l~G~g  317 (572)
T PLN02990        270 QYKTINEALNAVPKANQKPFVIYIKQG-VYNE-KVDVTK--KMTHVTFIGDG  317 (572)
T ss_pred             CCcCHHHHHhhCcccCCceEEEEEeCc-eeEE-EEEecC--CCCcEEEEecC
Confidence            5777999999886643  347999999 7753 232311  14577777665

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=96.64  E-value=0.13  Score=51.28  Aligned_cols=125  Identities=13%  Similarity=0.165  Sum_probs=78.8

Q ss_pred             eeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCC---CCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCcee
Q 015319          269 GSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGD---SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSN  345 (409)
Q Consensus       269 ~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~---~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~n  345 (409)
                      .++.-.|+...+..+ .++|.+..+.++.|++.+|....+   ....+||++.+++.+.|..+.|.-+.|||...+. +.
T Consensus       105 ~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S-~~  182 (408)
T COG3420         105 TATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTS-QH  182 (408)
T ss_pred             CcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEccc-cc
Confidence            445556666666544 568888999999999999987644   3578899999999999999999999999988763 33


Q ss_pred             EEEEEEEEcCC---------CeeEE-EecCCCCCCC----cEEEEEEEeEEEecc-cceEEEEee
Q 015319          346 VYVHNVNCGPG---------HGISI-GSLGKDNTKA----CVSNITVRDVMMHNT-MNGVRIKTW  395 (409)
Q Consensus       346 V~I~n~~~~~g---------~GisI-Gs~g~~~~~~----~v~nI~v~n~~~~~~-~~Gi~Ikt~  395 (409)
                      ..|+++.+...         ++-.+ ++...++..+    ..+++.|.|+.-.+. ..||-+..-
T Consensus       183 ~~~~gnr~~~~RygvHyM~t~~s~i~dn~s~~N~vG~ALMys~~l~V~~nrS~Gnrd~Gillnya  247 (408)
T COG3420         183 NVFKGNRFRDLRYGVHYMYTNDSRISDNSSRDNRVGYALMYSDRLKVSDNRSSGNRDHGILLNYA  247 (408)
T ss_pred             ceecccchhheeeeEEEEeccCcEeecccccCCcceEEEEEeccEEEEcCcccCccccceeeeee
Confidence            33343333321         11111 0000011001    246777887777654 467666554

>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length

Probab=96.57  E-value=0.0024  Score=47.85  Aligned_cols=38  Identities=37%  Similarity=0.416  Sum_probs=23.5

Q ss_pred             ccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCc
Q 015319          117 AKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPM  157 (409)
Q Consensus       117 A~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i  157 (409)
                      |+|||++|||.||.+|+++..  .|..|-. .|.||.+..+
T Consensus         1 A~GDGvtdDt~A~~a~l~a~~--~g~~IDg-~GlTykVs~l   38 (67)
T PF12218_consen    1 AKGDGVTDDTAAITAALEASP--VGRKIDG-AGLTYKVSSL   38 (67)
T ss_dssp             ---CCCCE-HHHHHHHHHHS---TTS-EE--TT-EEEESS-
T ss_pred             CCCccccCcHHHHHHHHhccC--CCeEEec-CCceEEEeeC
Confidence            789999999999999997532  2455554 7779998876

The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.

>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen

Probab=96.34  E-value=0.42  Score=48.86  Aligned_cols=81  Identities=12%  Similarity=0.029  Sum_probs=51.8

Q ss_pred             eeeeEEEeceEEecCC-CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEE
Q 015319          269 GSFNVTVTGITIQNSP-QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVY  347 (409)
Q Consensus       269 ~~~nv~I~gvti~ns~-~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~  347 (409)
                      +-.+|++.++.|.... .-++.+....++++++|.+.+-    ....++.  -....|++|.|...--||.- .+...+.
T Consensus       119 gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~g~cl~~--~~~~~VrGC~F~~C~~gi~~-~~~~~ls  191 (386)
T PF01696_consen  119 GMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----HGTCLES--WAGGEVRGCTFYGCWKGIVS-RGKSKLS  191 (386)
T ss_pred             eeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----cceeEEE--cCCcEEeeeEEEEEEEEeec-CCcceEE
Confidence            3456777777777666 5556777777788888877762    3333333  35677788877655455532 2356777


Q ss_pred             EEEEEEcCC
Q 015319          348 VHNVNCGPG  356 (409)
Q Consensus       348 I~n~~~~~g  356 (409)
                      |++|+|+..
T Consensus       192 Vk~C~FekC  200 (386)
T PF01696_consen  192 VKKCVFEKC  200 (386)
T ss_pred             eeheeeehe
Confidence            777777764

E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.

>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina

Probab=95.33  E-value=0.17  Score=46.36  Aligned_cols=102  Identities=20%  Similarity=0.166  Sum_probs=60.9

Q ss_pred             ccEEEEeEEEeCCCCCCCCCceeecC---------cccEEEEeeEEee-CC-C-----eEEeCCCceeEEEEEEEEcCCC
Q 015319          294 IGVVVHDVSVSSPGDSPNTDGIHLQN---------SKDVLIHTSNLAC-GD-D-----CVSIQTGCSNVYVHNVNCGPGH  357 (409)
Q Consensus       294 ~nV~I~n~~I~s~~~~~n~DGI~l~~---------s~nV~I~n~~i~~-gD-D-----~Iai~sg~~nV~I~n~~~~~g~  357 (409)
                      ++|+|.|.+|..    ...-||.|.+         .++|.|+++.|.. |- -     +=.+.+|..|..|||++|.+..
T Consensus         2 ~dIEIYnN~I~~----T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y   77 (198)
T PF08480_consen    2 DDIEIYNNTIYN----TYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVY   77 (198)
T ss_pred             CceEEecceeec----ccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccc
Confidence            356666666666    3566666642         3588898888753 21 1     1234456789999999999865


Q ss_pred             eeEEEecCCC---CCCCcEEEEEEEeEEEecccceEEEEeecCCCCeE
Q 015319          358 GISIGSLGKD---NTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSG  402 (409)
Q Consensus       358 GisIGs~g~~---~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v  402 (409)
                      +.+|..+-.+   .-.+.---.+|||+.|.++...   +.-+.|+|+.
T Consensus        78 ~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~r---~~~~~GtGYg  122 (198)
T PF08480_consen   78 HAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRKR---KSSPAGTGYG  122 (198)
T ss_pred             cceEEEEecccccCCCCCceEEEEEcceEeeeeec---ccCCCCceeE
Confidence            5444332111   0112234488888888887543   5555666653

Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=94.46  E-value=0.045  Score=59.58  Aligned_cols=16  Identities=31%  Similarity=0.308  Sum_probs=10.5

Q ss_pred             eEEEeeccccCCCCCc
Q 015319          109 VFNVKDFGAKGNGVSD  124 (409)
Q Consensus       109 ~~~V~d~GA~gdg~tD  124 (409)
                      ..-|..||.++--.-+
T Consensus       606 maPvlP~gLkpKK~~k  621 (1102)
T KOG1924|consen  606 MAPVLPFGLKPKKVYK  621 (1102)
T ss_pred             ccccCCCCCCccccCC
Confidence            3457888888755443

>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies)

Probab=94.06  E-value=0.087  Score=36.61  Aligned_cols=40  Identities=15%  Similarity=0.271  Sum_probs=29.0

Q ss_pred             EEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEee
Q 015319          288 LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLAC  332 (409)
Q Consensus       288 i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~  332 (409)
                      |.+..+.+.+|++.+|..     +.|||++..+++-+|+++++..
T Consensus         2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~   41 (44)
T TIGR03804         2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS   41 (44)
T ss_pred             EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence            556667777777777777     6668888777777777777653

This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.

>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]

Probab=93.69  E-value=1.7  Score=43.48  Aligned_cols=113  Identities=12%  Similarity=0.081  Sum_probs=63.1

Q ss_pred             eEEEEeeeeEEEeceEEecCCCCe---------EEeecCccEEEEeEEEeCCCCCCCCCceeecCc-----------ccE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQCH---------LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNS-----------KDV  323 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~~---------i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s-----------~nV  323 (409)
                      +-.|..-.++.+++++++|....+         ......+.+.++||.+..     +.|-+....+           -.-
T Consensus       182 at~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg-----~QdTlFv~~~~~~~~~~tn~~~R~  256 (405)
T COG4677         182 ATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLG-----NQDTLFVGNSGVQNRLETNRQPRT  256 (405)
T ss_pred             hhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEee-----ccceEEecCCCCccccccCcchhh
Confidence            334556677888888888875443         223467788889998887     3343333322           245


Q ss_pred             EEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC------CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          324 LIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP------GHGISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       324 ~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~------g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      +++||+|...-| +.+++  --++|++|++-.      -.|+-.-...   ..+.---.++-|+++.-..
T Consensus       257 yftNsyI~GdvD-fIfGs--gtaVFd~c~i~~~d~r~~~~gYIfApST---~~~~~YGflalNsrfna~g  320 (405)
T COG4677         257 YFTNSYIEGDVD-FIFGS--GTAVFDNCEIQVVDSRTQQEGYIFAPST---LSGIPYGFLALNSRFNASG  320 (405)
T ss_pred             heecceecccce-EEecc--ceEEeccceEEEeccCCCcceeEeccCC---CCCCceeEEEEeeeeecCC
Confidence            678888875433 33343  345667776543      1232221111   1222346777888887543

>PLN02773 pectinesterase

Probab=92.63  E-value=1.4  Score=44.08  Aligned_cols=72  Identities=6%  Similarity=0.162  Sum_probs=47.5

Q ss_pred             eecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEEe
Q 015319          290 FDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGS  363 (409)
Q Consensus       290 ~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIGs  363 (409)
                      ...++++.++|++|.+.........+.+. .+..+.+.||.|....|.+..+.+  ..+++||.+++.-.+=+|+
T Consensus        98 ~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~g--r~yf~~c~IeG~VDFIFG~  170 (317)
T PLN02773         98 IVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYG--KQYLRDCYIEGSVDFIFGN  170 (317)
T ss_pred             EEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCC--CEEEEeeEEeecccEEeec
Confidence            44577899999999986322222333332 357899999999988888877653  4566666666655544443

>PLN02480 Probable pectinesterase

Probab=92.49  E-value=2.2  Score=43.18  Aligned_cols=109  Identities=12%  Similarity=0.026  Sum_probs=57.9

Q ss_pred             EEEeeeeEEEeceEEecCC---------CCeEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319          266 RFYGSFNVTVTGITIQNSP---------QCHLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD  335 (409)
Q Consensus       266 ~~~~~~nv~I~gvti~ns~---------~~~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD  335 (409)
                      ....+++++++||+|+|+.         ..++-+ ...+.+.+.||+|..     ..|=+.... ..-..+||+|...=|
T Consensus       127 vtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G-----~QDTLy~~~-gR~yf~~C~IeG~VD  200 (343)
T PLN02480        127 FTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYS-----THNTLFDYK-GRHYYHSCYIQGSID  200 (343)
T ss_pred             EEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEec-----ccceeEeCC-CCEEEEeCEEEeeee
Confidence            3345567777777777762         122333 456677777777766     334333222 245666676665433


Q ss_pred             eEEeCCCceeEEEEEEEEcCC-------CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          336 CVSIQTGCSNVYVHNVNCGPG-------HGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       336 ~Iai~sg~~nV~I~n~~~~~g-------~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      =| ++  .-..+|+||++..-       .|. |-..++..  ..-.-..|.||++.+.
T Consensus       201 FI-FG--~g~a~fe~C~i~s~~~~~~~~~G~-ITA~~r~~--~~~~GfvF~~C~i~g~  252 (343)
T PLN02480        201 FI-FG--RGRSIFHNCEIFVIADRRVKIYGS-ITAHNRES--EDNSGFVFIKGKVYGI  252 (343)
T ss_pred             EE-cc--ceeEEEEccEEEEecCCCCCCceE-EEcCCCCC--CCCCEEEEECCEEccc
Confidence            22 22  24667888877641       131 22222111  2234678888888763

>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]

Probab=92.13  E-value=1.2  Score=44.67  Aligned_cols=114  Identities=19%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             ceeEEEEeeeeEEEeceEEecCC-------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCC
Q 015319          262 PTALRFYGSFNVTVTGITIQNSP-------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGD  334 (409)
Q Consensus       262 p~~i~~~~~~nv~I~gvti~ns~-------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gD  334 (409)
                      -..|.+.++.++.|++.+|+--.       .-+|.+.+++++.|.+.+|.-     ..|||..+.|++-.++++.++...
T Consensus       120 ~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy-----~rDgIy~~~S~~~~~~gnr~~~~R  194 (408)
T COG3420         120 SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISY-----GRDGIYSDTSQHNVFKGNRFRDLR  194 (408)
T ss_pred             ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCcccc-----ccceEEEcccccceecccchhhee
Confidence            35788899999999999997432       446999999999999888877     789999998888888888776432


Q ss_pred             CeEEe--------------CC--C-----ceeEEEEEEEEcC--CCeeEEEecCCCCCCCcEEEEEEEeEEEecccce
Q 015319          335 DCVSI--------------QT--G-----CSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNG  389 (409)
Q Consensus       335 D~Iai--------------~s--g-----~~nV~I~n~~~~~--g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~G  389 (409)
                      -++..              ..  |     +++++|.|+.-.+  .|||-+--         +..-.|.++.+.+...|
T Consensus       195 ygvHyM~t~~s~i~dn~s~~N~vG~ALMys~~l~V~~nrS~Gnrd~Gillny---------a~~s~i~~N~v~g~~~G  263 (408)
T COG3420         195 YGVHYMYTNDSRISDNSSRDNRVGYALMYSDRLKVSDNRSSGNRDHGILLNY---------ANYSRIVGNRVAGNVSG  263 (408)
T ss_pred             eeEEEEeccCcEeecccccCCcceEEEEEeccEEEEcCcccCccccceeeee---------eeccceeccEEEecccc
Confidence            22211              00  1     5778888877665  46655432         33444445545544455

>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A

Probab=90.72  E-value=3.4  Score=42.97  Aligned_cols=128  Identities=15%  Similarity=0.186  Sum_probs=55.7

Q ss_pred             EEEEeeeeEEEeceEEecCC--C-----CeEEe--ecCccEEEEeEEEeCCCCC-CCCCceee----cCcccEEEEeeEE
Q 015319          265 LRFYGSFNVTVTGITIQNSP--Q-----CHLKF--DNCIGVVVHDVSVSSPGDS-PNTDGIHL----QNSKDVLIHTSNL  330 (409)
Q Consensus       265 i~~~~~~nv~I~gvti~ns~--~-----~~i~~--~~~~nV~I~n~~I~s~~~~-~n~DGI~l----~~s~nV~I~n~~i  330 (409)
                      |.+. .+.++|+|++|++..  .     +....  ..|.+.++.+|.|..-... ...+..++    ...+|-+|++|.|
T Consensus        62 l~i~-G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F  140 (425)
T PF14592_consen   62 LRIS-GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYF  140 (425)
T ss_dssp             EEE--SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EE
T ss_pred             EEEE-eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEe
Confidence            4554 478999999998742  1     11212  2588899999999863211 12223333    2578999999999


Q ss_pred             eeC---CCeEEeC---CC----ceeEEEEEEEEcC-----CC---eeEEEecCCCCCCCcEEEEEEEeEEEecccceEEE
Q 015319          331 ACG---DDCVSIQ---TG----CSNVYVHNVNCGP-----GH---GISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRI  392 (409)
Q Consensus       331 ~~g---DD~Iai~---sg----~~nV~I~n~~~~~-----g~---GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~I  392 (409)
                      ...   +--+.+.   .+    ..+-.|++|.|..     +.   .|.||.-.   ..-.-++.+|+++.|++|..=.+|
T Consensus       141 ~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~---~S~~~s~t~Ve~NlFe~cdGE~EI  217 (425)
T PF14592_consen  141 QGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSH---SSMSDSNTTVENNLFERCDGEVEI  217 (425)
T ss_dssp             E---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SST---T-B-----EEES-EEEEE-SSSEE
T ss_pred             eccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEeccc---ccccccceeeecchhhhcCCceeE
Confidence            763   2234444   11    3355688888873     22   28887532   222236778888888876544444


Q ss_pred             Eeec
Q 015319          393 KTWQ  396 (409)
Q Consensus       393 kt~~  396 (409)
                      -+..
T Consensus       218 ISvK  221 (425)
T PF14592_consen  218 ISVK  221 (425)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            4443

>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies)

Probab=90.49  E-value=0.32  Score=33.72  Aligned_cols=41  Identities=17%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             ceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC
Q 015319          314 GIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP  355 (409)
Q Consensus       314 GI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~  355 (409)
                      ||.+..+.+.+|+++.+....|+|.+... ++-+|+++++..
T Consensus         1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~s-~~n~i~~N~~~~   41 (44)
T TIGR03804         1 GIYLESSSNNTLENNTASNNSYGIYLTDS-SNNTLSNNTASS   41 (44)
T ss_pred             CEEEEecCCCEEECcEEeCCCCEEEEEeC-CCCEeECCEEEc
Confidence            78888888999999999988889988874 566666666543

This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.

>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3

Probab=89.21  E-value=2.5  Score=42.05  Aligned_cols=68  Identities=9%  Similarity=0.157  Sum_probs=40.0

Q ss_pred             cCccEEEEeEEEeCCCCCC--CCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEE
Q 015319          292 NCIGVVVHDVSVSSPGDSP--NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIG  362 (409)
Q Consensus       292 ~~~nV~I~n~~I~s~~~~~--n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIG  362 (409)
                      ..+++.++|++|.+.....  .+-.+.+ .+..+.+.+|.|....|.+....+  ..+++||.+++.-.+=+|
T Consensus        85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~~--r~y~~~c~IeG~vDFIfG  154 (298)
T PF01095_consen   85 NADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANGG--RQYFKNCYIEGNVDFIFG  154 (298)
T ss_dssp             -STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-SS--EEEEES-EEEESEEEEEE
T ss_pred             cccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeeccc--eeEEEeeEEEecCcEEEC
Confidence            4568888999998753222  2233333 357899999999998888877664  566777777665444444

1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....

>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein

Probab=88.94  E-value=1.8  Score=45.19  Aligned_cols=32  Identities=9%  Similarity=0.065  Sum_probs=15.6

Q ss_pred             eeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeC
Q 015319          269 GSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSS  305 (409)
Q Consensus       269 ~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s  305 (409)
                      .-.|++|+|..-.|+-..     +=.+++|.+|.|..
T Consensus       142 ~y~g~~ItN~~~~nt~~~-----GHpD~e~N~c~F~~  173 (465)
T PF01690_consen  142 NYNGCTITNYKADNTWKY-----GHPDLELNGCHFND  173 (465)
T ss_pred             cccCcEEecccccCcccC-----CCCCceecCccccc
Confidence            334556666655554222     22345555555544

This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid

>PLN02176 putative pectinesterase

Probab=88.59  E-value=9.9  Score=38.52  Aligned_cols=106  Identities=14%  Similarity=0.107  Sum_probs=52.3

Q ss_pred             eeeeEEEeceEEecCCC----------CeE-EeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeE
Q 015319          269 GSFNVTVTGITIQNSPQ----------CHL-KFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCV  337 (409)
Q Consensus       269 ~~~nv~I~gvti~ns~~----------~~i-~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~I  337 (409)
                      .++++..++|+|+|.-.          ..+ .....+...+.+|.|..     .+|=+.... ..-..++|+|...=|=|
T Consensus       120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G-----~QDTLy~~~-gRqyf~~CyIeG~VDFI  193 (340)
T PLN02176        120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDG-----FQDTLFDGK-GRHYYKRCVISGGIDFI  193 (340)
T ss_pred             ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEec-----ccceeEeCC-cCEEEEecEEEecccEE
Confidence            45666666666666521          111 12235666666666665     333333322 24556666666544433


Q ss_pred             EeCCCceeEEEEEEEEcCC---------CeeEEEecCCCCCCCcEEEEEEEeEEEec
Q 015319          338 SIQTGCSNVYVHNVNCGPG---------HGISIGSLGKDNTKACVSNITVRDVMMHN  385 (409)
Q Consensus       338 ai~sg~~nV~I~n~~~~~g---------~GisIGs~g~~~~~~~v~nI~v~n~~~~~  385 (409)
                      . +  .-...++||++..-         .| .|-..++. ....-.-..|.||++.+
T Consensus       194 F-G--~a~a~Fe~C~I~s~~~~~~~~~~~g-~ITA~~r~-~~~~~~GfvF~~C~itg  245 (340)
T PLN02176        194 F-G--YAQSIFEGCTLKLTLGIYPPNEPYG-TITAQGRP-SPSDKGGFVFKDCTVTG  245 (340)
T ss_pred             e-c--CceEEEeccEEEEecccCCCCCCcE-EEEeCCCC-CCCCCcEEEEECCEEcc
Confidence            2 2  24567777776531         12 11111111 11223467788888876

>PLN02708 Probable pectinesterase/pectinesterase inhibitor

Probab=88.27  E-value=3.5  Score=44.45  Aligned_cols=73  Identities=8%  Similarity=0.121  Sum_probs=54.5

Q ss_pred             EeecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEEe
Q 015319          289 KFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGS  363 (409)
Q Consensus       289 ~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIGs  363 (409)
                      .....+++..+|++|.+.........+.+. .+..+.+.||.|....|.+..+++  ..++++|.+.+.-.|=+|.
T Consensus       325 ~~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtVDFIFG~  398 (553)
T PLN02708        325 VGVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSL--RQFYKSCRIQGNVDFIFGN  398 (553)
T ss_pred             EEEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCC--ceEEEeeEEeecCCEEecC
Confidence            345678999999999986433334455553 467899999999999999888764  4589999999865555554

>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina

Probab=87.21  E-value=12  Score=34.55  Aligned_cols=115  Identities=15%  Similarity=0.091  Sum_probs=74.0

Q ss_pred             eeEEEeceEEecCCCCeEEeec---------CccEEEEeEEEeCCCC---CCCCCceeecCcccEEEEeeEEeeC-CCeE
Q 015319          271 FNVTVTGITIQNSPQCHLKFDN---------CIGVVVHDVSVSSPGD---SPNTDGIHLQNSKDVLIHTSNLACG-DDCV  337 (409)
Q Consensus       271 ~nv~I~gvti~ns~~~~i~~~~---------~~nV~I~n~~I~s~~~---~~n~DGI~l~~s~nV~I~n~~i~~g-DD~I  337 (409)
                      +++.|-+-+|.+...++|-+..         .++|.|++..|...+.   .....||-..+-.|.+|+|++|+.- .-+|
T Consensus         2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai   81 (198)
T PF08480_consen    2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAI   81 (198)
T ss_pred             CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceE
Confidence            3567777777777777755543         3589999998886543   3466788888888999999999854 3445


Q ss_pred             EeC--------CC-ceeEEEEEEEEcC---------CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceE
Q 015319          338 SIQ--------TG-CSNVYVHNVNCGP---------GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGV  390 (409)
Q Consensus       338 ai~--------sg-~~nV~I~n~~~~~---------g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi  390 (409)
                      +-.        .| -.-.+|||+++..         +.|..|-..-     ..-..+.++|+-+.+...|=
T Consensus        82 ~~~y~~~~~sp~gsgyttivRNNII~NT~~r~~~~~GtGYgv~N~L-----~~tHsFvLenNclYnN~aGn  147 (198)
T PF08480_consen   82 AQMYPDYDLSPKGSGYTTIVRNNIIVNTRKRKSSPAGTGYGVINYL-----PETHSFVLENNCLYNNAAGN  147 (198)
T ss_pred             EEEecccccCCCCCceEEEEEcceEeeeeecccCCCCceeEEEecC-----CCcceEEEEccceeccCcCc
Confidence            442        11 1335567766543         3455554321     12357778888888765553

Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.

>PLN02713 Probable pectinesterase/pectinesterase inhibitor

Probab=87.18  E-value=4.3  Score=43.89  Aligned_cols=113  Identities=13%  Similarity=0.100  Sum_probs=67.1

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      +-.....+++..++++|+|....    .+- -...+...+.+|.|..     .+|=+..... .-..++|+|...=|=| 
T Consensus       333 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI-  405 (566)
T PLN02713        333 ATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEA-----YQDTLYTHSL-RQFYRECDIYGTVDFI-  405 (566)
T ss_pred             eeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeecc-----CCcceEECCC-CEEEEeeEEeccccee-
Confidence            44445668888888888886421    222 2457778888888887     4555555433 4577888887544433 


Q ss_pred             eCCCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          339 IQTGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       339 i~sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      +  |.-.++|+||++..-     ..-.|--.|+. ....-.-+.|.||+|...
T Consensus       406 F--G~a~avfq~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~c~i~~~  455 (566)
T PLN02713        406 F--GNAAVVFQNCNLYPRLPMQGQFNTITAQGRT-DPNQNTGTSIQNCTIKAA  455 (566)
T ss_pred             c--ccceEEEeccEEEEecCCCCCcceeeecCCC-CCCCCCEEEEEcCEEecC
Confidence            2  235678888887541     11122222221 122235789999999864

>PLN02506 putative pectinesterase/pectinesterase inhibitor

Probab=87.14  E-value=4  Score=43.88  Aligned_cols=83  Identities=8%  Similarity=0.122  Sum_probs=59.8

Q ss_pred             eecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEEecCCCC
Q 015319          290 FDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDN  368 (409)
Q Consensus       290 ~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIGs~g~~~  368 (409)
                      ....+++..+|++|.+.........+.+. .+..+.+.+|.|....|.+..+.+  .-+++||.+++.-.+=+|..    
T Consensus       315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~--rqyy~~C~I~GtVDFIFG~a----  388 (537)
T PLN02506        315 AVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSL--RQFYRECEIYGTIDFIFGNG----  388 (537)
T ss_pred             EEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCC--ceEEEeeEEecccceEccCc----
Confidence            45678899999999986433334445553 468899999999999999887764  46999999998666655542    


Q ss_pred             CCCcEEEEEEEeEEEe
Q 015319          369 TKACVSNITVRDVMMH  384 (409)
Q Consensus       369 ~~~~v~nI~v~n~~~~  384 (409)
                            ..+|+||++.
T Consensus       389 ------~avfq~C~i~  398 (537)
T PLN02506        389 ------AAVLQNCKIY  398 (537)
T ss_pred             ------eeEEeccEEE
Confidence                  4555555555

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans

Probab=86.80  E-value=7.7  Score=37.54  Aligned_cols=100  Identities=16%  Similarity=0.232  Sum_probs=71.8

Q ss_pred             EEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEee-CCCeEEeC-----CCceeEEEEEEEEcC-CCeeE
Q 015319          288 LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLAC-GDDCVSIQ-----TGCSNVYVHNVNCGP-GHGIS  360 (409)
Q Consensus       288 i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~-gDD~Iai~-----sg~~nV~I~n~~~~~-g~Gis  360 (409)
                      +.+....+.+|++++|.++. ....-||+++++ +.+|+||+|.. ..++|.+.     ....+++|.++.|.. ..||+
T Consensus        91 ~tI~~~~~~~i~GvtItN~n-~~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~  168 (246)
T PF07602_consen   91 VTIILANNATISGVTITNPN-IARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGIS  168 (246)
T ss_pred             EEEEecCCCEEEEEEEEcCC-CCcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeE
Confidence            45556778899999999962 125668999877 99999999876 46777653     346778888888886 57888


Q ss_pred             EEecCCCCCCCcEEEEEEEeEEEecccceEEEEee
Q 015319          361 IGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTW  395 (409)
Q Consensus       361 IGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~  395 (409)
                      |-..    ... +.| .++|+.|++...||.+...
T Consensus       169 i~~~----~~~-~~n-~I~NN~I~~N~~Gi~~~~~  197 (246)
T PF07602_consen  169 ISDN----AAP-VEN-KIENNIIENNNIGIVAIGD  197 (246)
T ss_pred             EEcc----cCC-ccc-eeeccEEEeCCcCeEeecc
Confidence            8643    222 333 5588888877778776643

Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).

>PLN02170 probable pectinesterase/pectinesterase inhibitor

Probab=86.13  E-value=5.9  Score=42.41  Aligned_cols=114  Identities=15%  Similarity=0.094  Sum_probs=68.1

Q ss_pred             eeEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeE
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCV  337 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~I  337 (409)
                      .+-.....+++..+|++|+|....    .+- ....+...+.+|+|..     ..|=+..... .-..++|+|...=|=|
T Consensus       305 SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~G-----yQDTLy~~~~-Rqyy~~C~I~GtVDFI  378 (529)
T PLN02170        305 TATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEG-----YQDSLYTHSK-RQFYRETDITGTVDFI  378 (529)
T ss_pred             ceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEec-----cCCcceeCCC-CEEEEeeEEcccccee
Confidence            345556778888888888887422    222 2357778888888887     4555554433 3466888887654433


Q ss_pred             EeCCCceeEEEEEEEEcCC----CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          338 SIQTGCSNVYVHNVNCGPG----HGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       338 ai~sg~~nV~I~n~~~~~g----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                       ++  .-..+++||++..-    ..-.|--.++. ....-.-+.|.||++.+.
T Consensus       379 -FG--~a~avFq~C~I~~~~~~~~~g~ITAq~R~-~~~~~~Gfvf~~C~it~~  427 (529)
T PLN02170        379 -FG--NSAVVFQSCNIAARKPSGDRNYVTAQGRS-DPNQNTGISIHNCRITAE  427 (529)
T ss_pred             -cc--cceEEEeccEEEEecCCCCceEEEecCCC-CCCCCceEEEEeeEEecC
Confidence             22  34577888877641    11223222221 122235788999999874

>PLN02416 probable pectinesterase/pectinesterase inhibitor

Probab=85.87  E-value=4.5  Score=43.50  Aligned_cols=70  Identities=10%  Similarity=0.167  Sum_probs=51.0

Q ss_pred             ecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEE
Q 015319          291 DNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIG  362 (409)
Q Consensus       291 ~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIG  362 (409)
                      ...+++..+|++|.+.........+.+. .+..+.+.+|.|....|.+..+++  ..++++|.+++.-.+=+|
T Consensus       314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG  384 (541)
T PLN02416        314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSF--RQFYRECDIYGTIDYIFG  384 (541)
T ss_pred             EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCC--ceEEEeeEEeeccceeec
Confidence            3467899999999986443344445552 467899999999999898887763  568999999885444333

>PLN02916 pectinesterase family protein

Probab=85.87  E-value=6  Score=42.13  Aligned_cols=115  Identities=14%  Similarity=0.092  Sum_probs=74.2

Q ss_pred             eeEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeE
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCV  337 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~I  337 (409)
                      .+-.....+++..++|+|.|....    .+-+ ...+...+.+|.|..     ..|=+..... .-..++|+|...=|=|
T Consensus       269 SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI  342 (502)
T PLN02916        269 SATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKG-----YQDTLFVHSL-RQFYRDCHIYGTIDFI  342 (502)
T ss_pred             eEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEec-----cCceeEeCCC-CEEEEecEEeccccee
Confidence            355556778999999999998432    2222 367888999999998     5565555443 4577899998654443


Q ss_pred             EeCCCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          338 SIQTGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       338 ai~sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                       +  |.-..+|+||++..-     ..-.|--.++. ....-.-+.|.||+|....
T Consensus       343 -F--G~a~avFq~C~I~~~~~~~~~~g~ITAq~r~-~~~~~tGfvf~~C~it~~~  393 (502)
T PLN02916        343 -F--GDAAVVFQNCDIFVRRPMDHQGNMITAQGRD-DPHENTGISIQHSRVRASP  393 (502)
T ss_pred             -c--cCceEEEecCEEEEecCCCCCcceEEecCCC-CCCCCcEEEEEeeEEecCc
Confidence             2  236778899987641     22233322221 1223458999999998753

>PLN02301 pectinesterase/pectinesterase inhibitor

Probab=85.70  E-value=5.2  Score=43.09  Aligned_cols=114  Identities=11%  Similarity=0.071  Sum_probs=71.9

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      +-.....+++..+|++|+|....    .+- -...+...+.+|.|..     ..|=+..... .-..+||+|...=|=| 
T Consensus       316 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI-  388 (548)
T PLN02301        316 ATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDA-----YQDTLYAHSL-RQFYRDSYITGTVDFI-  388 (548)
T ss_pred             EEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeee-----ccccceecCC-cEEEEeeEEEecccee-
Confidence            45556778899999999987532    222 2357888999999988     4555555443 3578888888654433 


Q ss_pred             eCCCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          339 IQTGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       339 i~sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      +  |.-..+|+||++..-     ..-.|--.|+. +...-.-+.|.||+|....
T Consensus       389 F--G~a~avfq~c~i~~~~~~~~~~~~iTAqgr~-~~~~~tG~vf~~c~i~~~~  439 (548)
T PLN02301        389 F--GNAAVVFQNCKIVARKPMAGQKNMVTAQGRT-DPNQNTGISIQKCDIIASS  439 (548)
T ss_pred             c--ccceeEEeccEEEEecCCCCCCceEEecCCC-CCCCCCEEEEEeeEEecCc
Confidence            2  235678888887641     11223222321 2223458999999998753

>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional

Probab=85.58  E-value=5.7  Score=42.74  Aligned_cols=64  Identities=9%  Similarity=0.071  Sum_probs=44.5

Q ss_pred             eecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC
Q 015319          290 FDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP  355 (409)
Q Consensus       290 ~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~  355 (409)
                      ....+++..+|++|.+.........+.+. .+....+.+|.|....|.+..+++  .-+++||.+++
T Consensus       309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~G  373 (538)
T PLN03043        309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYG  373 (538)
T ss_pred             EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC--cEEEEeeEEee
Confidence            34457899999999986433344555553 457799999999988888877664  24566665555

>PLN02201 probable pectinesterase/pectinesterase inhibitor

Probab=85.54  E-value=7.2  Score=41.78  Aligned_cols=114  Identities=10%  Similarity=0.062  Sum_probs=73.0

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      +-.....+++..++++|.|...-    .+-+ ...+...+.+|.|..     ..|=+.....+ -..++|+|...=|=| 
T Consensus       286 AT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G-----~QDTLy~~~~R-qyy~~C~I~GtVDFI-  358 (520)
T PLN02201        286 ATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRG-----YQDTLYTHTMR-QFYRECRITGTVDFI-  358 (520)
T ss_pred             EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeec-----cCCeeEeCCCC-EEEEeeEEeecccEE-
Confidence            44556788999999999998532    2222 457888999999998     56666655443 466889988654544 


Q ss_pred             eCCCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          339 IQTGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       339 i~sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      ++  .-..+|+||++..     +..-.|--.++. ....-.-+.|.||+|....
T Consensus       359 FG--~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~Gfvf~~C~it~~~  409 (520)
T PLN02201        359 FG--DATAVFQNCQILAKKGLPNQKNTITAQGRK-DPNQPTGFSIQFSNISADT  409 (520)
T ss_pred             ec--CceEEEEccEEEEecCCCCCCceEEecCCC-CCCCCcEEEEEeeEEecCc
Confidence            23  3567899998875     111223222221 1223457899999998743

>PLN02468 putative pectinesterase/pectinesterase inhibitor

Probab=85.42  E-value=5.6  Score=43.05  Aligned_cols=122  Identities=14%  Similarity=0.122  Sum_probs=60.9

Q ss_pred             EEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC
Q 015319          266 RFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ  340 (409)
Q Consensus       266 ~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~  340 (409)
                      .....+++..++++|+|....    .+- ....+...+.+|.|..     ..|=+..... .-..++|+|...=|=| + 
T Consensus       340 ~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G-----~QDTLy~~~~-rq~y~~C~I~GtvDFI-F-  411 (565)
T PLN02468        340 FAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDA-----FQDTLYAHAQ-RQFYRECNIYGTVDFI-F-  411 (565)
T ss_pred             eeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEe-----ccchhccCCC-ceEEEeeEEeccccee-e-
Confidence            333456666677777665322    111 2345666666666666     3333333322 3346666665433322 1 


Q ss_pred             CCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC
Q 015319          341 TGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV  397 (409)
Q Consensus       341 sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G  397 (409)
                       |.-.++|+||.+..     +..-.|--.|+. +...-.-+.|.||+|......-..+++=|
T Consensus       412 -G~a~avfq~c~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~~~~~~~~yLG  471 (565)
T PLN02468        412 -GNSAVVFQNCNILPRRPMKGQQNTITAQGRT-DPNQNTGISIQNCTILPLGDLTSVKTFLG  471 (565)
T ss_pred             -ccceEEEeccEEEEecCCCCCCceEEecCCC-CCCCCceEEEEccEEecCCCccccceeee
Confidence             23566777777653     111223222221 12233568889998886543223344433

>PLN02665 pectinesterase family protein

Probab=84.95  E-value=9.7  Score=38.98  Aligned_cols=115  Identities=13%  Similarity=0.040  Sum_probs=73.5

Q ss_pred             eeEEEEeeeeEEEeceEEecCCC---------CeEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEee
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQ---------CHLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLAC  332 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~---------~~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~  332 (409)
                      .+-....++++..+||+|+|+..         ..+- ....+...+.||+|..     ..|=+.... -.-..+||+|..
T Consensus       146 SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G-----~QDTL~~~~-gr~yf~~CyIeG  219 (366)
T PLN02665        146 SATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIG-----FQDTLCDDK-GRHFFKDCYIEG  219 (366)
T ss_pred             eEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceecc-----ccceeEeCC-CCEEEEeeEEee
Confidence            35556688999999999999742         1222 2357889999999998     455554433 357788999987


Q ss_pred             CCCeEEeCCCceeEEEEEEEEcC-CCe--eEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          333 GDDCVSIQTGCSNVYVHNVNCGP-GHG--ISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       333 gDD~Iai~sg~~nV~I~n~~~~~-g~G--isIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      .=|=|. +.  -...+++|++.. ..|  -.|--.++. ....-.-..|.||++.+..
T Consensus       220 ~VDFIF-G~--g~a~fe~C~i~s~~~~~~g~ITA~~r~-~~~~~~GfvF~~C~itg~~  273 (366)
T PLN02665        220 TVDFIF-GS--GKSLYLNTELHVVGDGGLRVITAQARN-SEAEDSGFSFVHCKVTGTG  273 (366)
T ss_pred             ccceec-cc--cceeeEccEEEEecCCCcEEEEcCCCC-CCCCCceEEEEeeEEecCC
Confidence            655542 33  466899998875 332  122222211 1122346789999998754

>PLN02933 Probable pectinesterase/pectinesterase inhibitor

Probab=84.75  E-value=7.2  Score=41.85  Aligned_cols=114  Identities=10%  Similarity=0.067  Sum_probs=73.7

Q ss_pred             eeEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeE
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCV  337 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~I  337 (409)
                      .+-.....+++..++++|.|....    .+-+ ...+...+.+|.|..     ..|=+..... .-..++|+|...=|=|
T Consensus       297 SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G-----~QDTLy~~~~-Rqyy~~C~IeGtVDFI  370 (530)
T PLN02933        297 TATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDG-----YQDTLYVHSA-KQFYRECDIYGTIDFI  370 (530)
T ss_pred             ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEe-----cccccccCCC-ceEEEeeEEeccccee
Confidence            344556788999999999998532    2333 458889999999998     4555555443 4588999998654433


Q ss_pred             EeCCCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          338 SIQTGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       338 ai~sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                       ++  .-..+|+||.+..     +....|--.++. ....-.-+.|.||++...
T Consensus       371 -FG--~a~avFq~C~i~~~~~~~~~~~~iTAq~r~-~~~~~tGfvf~~C~it~~  420 (530)
T PLN02933        371 -FG--NAAVVFQNCSLYARKPNPNHKIAFTAQSRN-QSDQPTGISIISSRILAA  420 (530)
T ss_pred             -cc--CceEEEeccEEEEeccCCCCceEEEecCCC-CCCCCceEEEEeeEEecC
Confidence             23  3557888898764     122233333321 122335799999999874

>PLN02488 probable pectinesterase/pectinesterase inhibitor

Probab=84.73  E-value=7.5  Score=41.39  Aligned_cols=114  Identities=9%  Similarity=0.054  Sum_probs=76.1

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      +-.....+++..++++|+|...-    .+-+ ...+...+.+|.|..     ..|=+.... ..-..++|+|...=|=|.
T Consensus       277 ATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~G-----yQDTLy~~~-~RqyyrdC~I~GtVDFIF  350 (509)
T PLN02488        277 ATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEG-----YQDALYPHR-DRQFYRECFITGTVDFIC  350 (509)
T ss_pred             EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeec-----cCcceeeCC-CCEEEEeeEEeeccceEe
Confidence            44555778999999999998532    2333 467889999999998     555555443 356889999987655542


Q ss_pred             eCCCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          339 IQTGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       339 i~sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                         |.-.++|+||++..     +..-.|--.++. ....-.-+.|.||++....
T Consensus       351 ---G~a~avFq~C~I~sr~~~~~~~~~ITAq~R~-~~~~~tGfvf~~C~it~~~  400 (509)
T PLN02488        351 ---GNAAAVFQFCQIVARQPMMGQSNVITAQSRE-SKDDNSGFSIQKCNITASS  400 (509)
T ss_pred             ---cceEEEEEccEEEEecCCCCCCEEEEeCCCC-CCCCCcEEEEEeeEEecCC
Confidence               34678899998874     122234333321 1222347999999999754

>PRK10781 rcsF outer membrane lipoprotein; Reviewed

Probab=84.65  E-value=7.9  Score=33.88  Aligned_cols=23  Identities=17%  Similarity=0.172  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHhhcCCcEEEECC
Q 015319          126 TKAFEAAWAAACKVEASIMVVPA  148 (409)
Q Consensus       126 T~Aiq~Ai~~a~~~gg~~v~vP~  148 (409)
                      ..|-+++-..|.+.|+.-|+|-+
T Consensus        86 ~~Ar~~~r~kAa~~gaN~Vvl~~  108 (133)
T PRK10781         86 PTARKRMQINASKMKANAVLLHS  108 (133)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEE
Confidence            35566666667777776666643

>PLN02745 Putative pectinesterase/pectinesterase inhibitor

Probab=84.63  E-value=6.8  Score=42.67  Aligned_cols=72  Identities=8%  Similarity=0.099  Sum_probs=51.5

Q ss_pred             EeecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEE
Q 015319          289 KFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIG  362 (409)
Q Consensus       289 ~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIG  362 (409)
                      .....+++..+|++|.+.........+.+. .+....+.||.|....|.+..+.+  .-+++||.+++.-.+=+|
T Consensus       367 ~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG  439 (596)
T PLN02745        367 FVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTH--RQFYRSCVITGTIDFIFG  439 (596)
T ss_pred             EEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCC--cEEEEeeEEEeeccEEec
Confidence            344678899999999986432233444443 467899999999998888877764  578999998885444443

>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue

Probab=84.34  E-value=38  Score=32.12  Aligned_cols=129  Identities=14%  Similarity=0.079  Sum_probs=75.4

Q ss_pred             eeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcc-cEEEEeeEEeeCCCeEEeCCCceeEEEE
Q 015319          271 FNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSK-DVLIHTSNLACGDDCVSIQTGCSNVYVH  349 (409)
Q Consensus       271 ~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~-nV~I~n~~i~~gDD~Iai~sg~~nV~I~  349 (409)
                      .+.+|+++.|=....-+||...  +.+|+|+....    --.|.+.+.+.. .++|.+.-..+.+|=|.=..+.-.+.|+
T Consensus        61 ~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I~  134 (215)
T PF03211_consen   61 DGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTIK  134 (215)
T ss_dssp             TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEEE
T ss_pred             CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEEE
Confidence            4567888888666566777776  67788887776    466777776655 7777777777666655445555667777


Q ss_pred             EEEEcCCCeeEEEecCCCCCC-CcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEE
Q 015319          350 NVNCGPGHGISIGSLGKDNTK-ACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCY  406 (409)
Q Consensus       350 n~~~~~g~GisIGs~g~~~~~-~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~  406 (409)
                      |..... .|--+-|.|.-... +.-|+|.+++........-+.|-...|-.-.++++.
T Consensus       135 nF~a~d-~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~  191 (215)
T PF03211_consen  135 NFYAED-FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSC  191 (215)
T ss_dssp             EEEEEE-EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEE
T ss_pred             eEEEcC-CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEE
Confidence            754332 33222233211111 234566776666555555566777777766666554

It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.

>PLN02671 pectinesterase

Probab=84.32  E-value=12  Score=38.26  Aligned_cols=112  Identities=14%  Similarity=0.075  Sum_probs=72.3

Q ss_pred             eeEEEEeeeeEEEeceEEecCCC--------CeEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQ--------CHLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG  333 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~--------~~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g  333 (409)
                      .+-....++++..+||+|+|...        ..+- ....+.+.+.+|+|..     ..|=+.... -.-..+||+|...
T Consensus       146 SaTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G-----~QDTLy~~~-gR~yf~~CyIeG~  219 (359)
T PLN02671        146 TASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLG-----AQDTLLDET-GSHYFYQCYIQGS  219 (359)
T ss_pred             eEEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEec-----cccccEeCC-CcEEEEecEEEEe
Confidence            34455677899999999999831        1222 2357889999999998     455554433 3468899999876


Q ss_pred             CCeEEeCCCceeEEEEEEEEcC---CCe-eEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          334 DDCVSIQTGCSNVYVHNVNCGP---GHG-ISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       334 DD~Iai~sg~~nV~I~n~~~~~---g~G-isIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      =|=|. +.  -...|+||++..   ..| |.--+  +. ....-.-..|.||++.+.
T Consensus       220 VDFIF-G~--g~A~Fe~C~I~s~~~~~G~ITA~~--r~-~~~~~~GfvF~~C~itg~  270 (359)
T PLN02671        220 VDFIF-GN--AKSLYQDCVIQSTAKRSGAIAAHH--RD-SPTEDTGFSFVNCVINGT  270 (359)
T ss_pred             ccEEe-cc--eeEEEeccEEEEecCCCeEEEeec--cC-CCCCCccEEEEccEEccC
Confidence            56553 33  468899998875   224 33322  11 112235689999999763

>PLN02217 probable pectinesterase/pectinesterase inhibitor

Probab=84.08  E-value=5  Score=44.15  Aligned_cols=114  Identities=8%  Similarity=0.025  Sum_probs=72.1

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      +-.....+++..+||+|+|...-    .+- ....+...+.+|.|..     .+|=+.... ..-..++|+|...=|=|.
T Consensus       330 AT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G-----~QDTLy~~~-~Rqyy~~C~I~GtVDFIF  403 (670)
T PLN02217        330 ATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDG-----YQDTLYAHS-HRQFYRDCTISGTIDFLF  403 (670)
T ss_pred             EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeee-----ccchhccCC-CcEEEEeCEEEEeccEEe
Confidence            44455678888999999887531    222 2457888889999887     455554443 345788888876544442


Q ss_pred             eCCCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          339 IQTGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       339 i~sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                         |.-..+|+||++..-     ..-.|--.|+. +...-.-+.|.||+|.+..
T Consensus       404 ---G~a~avfq~C~I~~r~~~~~~~~~ITAqgr~-~~~~~tGfvf~~C~i~~~~  453 (670)
T PLN02217        404 ---GDAAAVFQNCTLLVRKPLLNQACPITAHGRK-DPRESTGFVLQGCTIVGEP  453 (670)
T ss_pred             ---cCceEEEEccEEEEccCCCCCceeEecCCCC-CCCCCceEEEEeeEEecCc
Confidence               335678999988741     22333333322 1223457999999999753

>PLN02197 pectinesterase

Probab=84.01  E-value=7.2  Score=42.40  Aligned_cols=66  Identities=9%  Similarity=0.190  Sum_probs=49.5

Q ss_pred             ecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCe
Q 015319          291 DNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHG  358 (409)
Q Consensus       291 ~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~G  358 (409)
                      ...+++..+|++|.+.........+.+. .+....+.+|.|....|.+...++  .-+++||.+++.-.
T Consensus       361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVD  427 (588)
T PLN02197        361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVD  427 (588)
T ss_pred             EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEeccc
Confidence            4567888999999986433344555553 468899999999999999988774  45899999987433

>PLN02314 pectinesterase

Probab=83.88  E-value=6.6  Score=42.70  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=55.8

Q ss_pred             EEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC
Q 015319          266 RFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ  340 (409)
Q Consensus       266 ~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~  340 (409)
                      .....+++..++++|+|....    .+- -...+...+.+|.|..     ..|=+..... .-..++|+|...=|=| + 
T Consensus       360 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G-----~QDTLy~~~~-rq~y~~C~I~GtvDFI-F-  431 (586)
T PLN02314        360 FAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDA-----FQDTLYAHSN-RQFYRDCDITGTIDFI-F-  431 (586)
T ss_pred             EEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEe-----ccchheeCCC-CEEEEeeEEEecccee-c-
Confidence            334556666666666665321    111 2345556666666666     3333333322 2455666665443322 1 


Q ss_pred             CCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          341 TGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       341 sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                       |.-..+|+||.+..-     ..-.|-..|+. +...-.-+.|.||+|.+..
T Consensus       432 -G~a~avf~~c~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~  481 (586)
T PLN02314        432 -GNAAVVFQNCNIQPRQPLPNQFNTITAQGKK-DPNQNTGISIQRCTISAFG  481 (586)
T ss_pred             -cCceeeeeccEEEEecCCCCCCceEecCCCC-CCCCCCEEEEEeeEEecCC
Confidence             224566777766531     11123222221 1223457888999888753

>PLN02698 Probable pectinesterase/pectinesterase inhibitor

Probab=83.70  E-value=6.4  Score=41.94  Aligned_cols=112  Identities=8%  Similarity=-0.020  Sum_probs=74.0

Q ss_pred             EEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeC
Q 015319          266 RFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ  340 (409)
Q Consensus       266 ~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~  340 (409)
                      .....+++..++|+|+|....    .+- ....+...+.+|.|..     ..|=+..... .-..++|+|...=|=|. +
T Consensus       265 ~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G-----~QDTLy~~~~-rqyy~~C~I~G~vDFIF-G  337 (497)
T PLN02698        265 FTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAG-----YQDTLYAAAL-RQFYRECDIYGTIDFIF-G  337 (497)
T ss_pred             EEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeec-----ccchheeCCC-cEEEEeeEEEeccceEe-c
Confidence            445778999999999998543    222 2468899999999998     5565655544 35888999986555442 3


Q ss_pred             CCceeEEEEEEEEcC---CCe--eEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          341 TGCSNVYVHNVNCGP---GHG--ISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       341 sg~~nV~I~n~~~~~---g~G--isIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      .  -..+|+||++..   ..|  -.|-..++. ....-.-+.|.||+|....
T Consensus       338 ~--a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~c~i~~~~  386 (497)
T PLN02698        338 N--AAAVFQNCYLFLRRPHGKSYNVILANGRS-DPGQNTGFSLQSCRIRTSS  386 (497)
T ss_pred             c--cceeecccEEEEecCCCCCceEEEecCCC-CCCCCceEEEEeeEEecCC
Confidence            3  557899998864   111  133333322 1223357999999999753

>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein

Probab=83.40  E-value=1.1  Score=46.74  Aligned_cols=9  Identities=11%  Similarity=0.368  Sum_probs=3.7

Q ss_pred             cEEEEeeEE
Q 015319          322 DVLIHTSNL  330 (409)
Q Consensus       322 nV~I~n~~i  330 (409)
                      ++.|.+|.|
T Consensus       163 D~e~N~c~F  171 (465)
T PF01690_consen  163 DLELNGCHF  171 (465)
T ss_pred             CceecCccc
Confidence            344444443

This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid

>PLN02313 Pectinesterase/pectinesterase inhibitor

Probab=83.26  E-value=7.3  Score=42.37  Aligned_cols=71  Identities=7%  Similarity=0.112  Sum_probs=51.4

Q ss_pred             eecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEE
Q 015319          290 FDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIG  362 (409)
Q Consensus       290 ~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIG  362 (409)
                      ....+++..+|++|.+.........+.+. .+....+.+|.|....|.+..+++  .-++++|.+.+.-.+=+|
T Consensus       358 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG  429 (587)
T PLN02313        358 AAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFG  429 (587)
T ss_pred             EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceecc
Confidence            34567899999999986433334445553 467899999999999999888774  458999999885444333

>PLN02990 Probable pectinesterase/pectinesterase inhibitor

Probab=82.93  E-value=7.8  Score=42.04  Aligned_cols=113  Identities=12%  Similarity=0.135  Sum_probs=62.0

Q ss_pred             EEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEe
Q 015319          265 LRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSI  339 (409)
Q Consensus       265 i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai  339 (409)
                      -.....+++..++++|+|....    .+-+ ...+...+.+|.|..     ..|=+..... .-..++|+|...=|=|. 
T Consensus       341 T~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFIF-  413 (572)
T PLN02990        341 TVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDG-----YQDTLYVHSH-RQFFRDCTVSGTVDFIF-  413 (572)
T ss_pred             EEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEec-----ccchhccCCC-cEEEEeeEEecccceEc-
Confidence            3344566777777777776422    1222 346667777777776     3444443332 34557777765444332 


Q ss_pred             CCCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          340 QTGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       340 ~sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                        |.-..+|+||++..     +..-.|--.++. +...-.-+.|.||+|.+..
T Consensus       414 --G~a~avf~~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~G~vf~~C~it~~~  463 (572)
T PLN02990        414 --GDAKVVLQNCNIVVRKPMKGQSCMITAQGRS-DVRESTGLVLQNCHITGEP  463 (572)
T ss_pred             --cCceEEEEccEEEEecCCCCCceEEEeCCCC-CCCCCceEEEEeeEEecCc
Confidence              23457788887764     111233333321 1122347889999998754

>PLN02484 probable pectinesterase/pectinesterase inhibitor

Probab=82.86  E-value=6.7  Score=42.64  Aligned_cols=113  Identities=11%  Similarity=0.080  Sum_probs=58.4

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eEEe-ecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HLKF-DNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i~~-~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      +-.....+++..++|+|+|...-    .+-+ ...+...+.+|.|..     ..|=+..... .-..++|+|...=|=| 
T Consensus       353 aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI-  425 (587)
T PLN02484        353 ASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIG-----YQDTLYVHSN-RQFFRECDIYGTVDFI-  425 (587)
T ss_pred             EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEec-----cCcccccCCC-cEEEEecEEEecccee-
Confidence            33444566666677777665321    1222 245666666676666     3343333322 3455666666443322 


Q ss_pred             eCCCceeEEEEEEEEcC-----CCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          339 IQTGCSNVYVHNVNCGP-----GHGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       339 i~sg~~nV~I~n~~~~~-----g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                        -|.-..+|+||++..     +..-.|--.++. +...-.-+.|.||+|...
T Consensus       426 --FG~a~avfq~C~i~~~~~~~~~~~~ITAq~r~-~~~~~~G~vf~~c~i~~~  475 (587)
T PLN02484        426 --FGNAAVVLQNCSIYARKPMAQQKNTITAQNRK-DPNQNTGISIHACRILAA  475 (587)
T ss_pred             --cccceeEEeccEEEEecCCCCCceEEEecCCC-CCCCCcEEEEEeeEEecC
Confidence              123566777777764     111233222221 122345789999999864

>PRK10531 acyl-CoA thioesterase; Provisional

Probab=82.84  E-value=10  Score=39.57  Aligned_cols=89  Identities=12%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             EEeecCccEEEEeEEEeCCCC----CCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCC----------ceeEEEEEEE
Q 015319          288 LKFDNCIGVVVHDVSVSSPGD----SPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTG----------CSNVYVHNVN  352 (409)
Q Consensus       288 i~~~~~~nV~I~n~~I~s~~~----~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg----------~~nV~I~n~~  352 (409)
                      ......+++..+|++|.+...    ..+...+.|. ....+.+.+|.|....|.+...+.          ....+++||.
T Consensus       200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy  279 (422)
T PRK10531        200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY  279 (422)
T ss_pred             EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence            445678899999999998632    1122334442 467899999999988888877421          2368999999


Q ss_pred             EcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          353 CGPGHGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       353 ~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      +++.-.+=+|.-          ..+|+||+|+-.
T Consensus       280 IeG~VDFIFG~g----------~AvFenC~I~s~  303 (422)
T PRK10531        280 IEGDVDFVFGRG----------AVVFDNTEFRVV  303 (422)
T ss_pred             EeecccEEccCc----------eEEEEcCEEEEe
Confidence            999877777752          667888887753

>PRK09752 adhesin; Provisional

Probab=82.77  E-value=1.2  Score=51.23  Aligned_cols=10  Identities=30%  Similarity=0.494  Sum_probs=5.0

Q ss_pred             ceEEEecceE
Q 015319          167 NIIFQLDGTI  176 (409)
Q Consensus       167 ~~~l~l~Gtl  176 (409)
                      ...+++.|.|
T Consensus      1010 ~y~vQLGGDl 1019 (1250)
T PRK09752       1010 TSTVQLSGDL 1019 (1250)
T ss_pred             eEEEeeccch
Confidence            3445665544

>PLN02432 putative pectinesterase

Probab=82.69  E-value=15  Score=36.43  Aligned_cols=108  Identities=9%  Similarity=0.003  Sum_probs=70.1

Q ss_pred             EEEeeeeEEEeceEEecCCCC---eE-EeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCC
Q 015319          266 RFYGSFNVTVTGITIQNSPQC---HL-KFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQT  341 (409)
Q Consensus       266 ~~~~~~nv~I~gvti~ns~~~---~i-~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~s  341 (409)
                      ....++++.++||+|+|.-.-   .+ .....+...+.+|.|..     ..|=+.... -.-..+||+|...=|=|. +.
T Consensus        89 ~~v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G-----~QDTLy~~~-gr~yf~~c~I~G~VDFIF-G~  161 (293)
T PLN02432         89 LSVLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILS-----YQDTLLDDT-GRHYYRNCYIEGATDFIC-GN  161 (293)
T ss_pred             EEEECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEec-----ccceeEECC-CCEEEEeCEEEecccEEe-cC
Confidence            345678999999999998421   22 22457889999999998     455554433 356888999987656553 33


Q ss_pred             CceeEEEEEEEEcC---CCe-eEEEecCCCCCCCcEEEEEEEeEEEec
Q 015319          342 GCSNVYVHNVNCGP---GHG-ISIGSLGKDNTKACVSNITVRDVMMHN  385 (409)
Q Consensus       342 g~~nV~I~n~~~~~---g~G-isIGs~g~~~~~~~v~nI~v~n~~~~~  385 (409)
                        -...|++|++..   ..| |.--  ++. ....-.-..|.||++.+
T Consensus       162 --g~a~Fe~c~i~s~~~~~g~itA~--~r~-~~~~~~Gfvf~~c~itg  204 (293)
T PLN02432        162 --AASLFEKCHLHSLSPNNGAITAQ--QRT-SASENTGFTFLGCKLTG  204 (293)
T ss_pred             --ceEEEEeeEEEEecCCCCeEEec--CCC-CCCCCceEEEEeeEEcc
Confidence              458899998874   234 3322  211 11222468999999985

>PRK13855 type IV secretion system protein VirB10; Provisional

Probab=81.98  E-value=6.2  Score=40.27  Aligned_cols=12  Identities=0%  Similarity=0.066  Sum_probs=6.4

Q ss_pred             CCceEEEeeccc
Q 015319          106 HSSVFNVKDFGA  117 (409)
Q Consensus       106 ~~~~~~V~d~GA  117 (409)
                      .++.--|..|++
T Consensus       109 ~~~~~pv~a~~~  120 (376)
T PRK13855        109 RPEETPIFAYSS  120 (376)
T ss_pred             ccccCceEEecc
Confidence            444455666743

>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional

Probab=81.95  E-value=3.8  Score=40.40  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=19.1

Q ss_pred             eeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeC
Q 015319          270 SFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSS  305 (409)
Q Consensus       270 ~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s  305 (409)
                      ++|+++.+++=.|+.+ -+++.+-+.+.|+|++..+
T Consensus       245 vknfvvanitgs~crq-lvhvengkhfvirnvkakn  279 (464)
T PRK10123        245 VKNFVVANITGSDCRQ-LIHVENGKHFVIRNIKAKN  279 (464)
T ss_pred             hhhEEEEeccCcChhh-eEEecCCcEEEEEeeeccc
Confidence            3455555555555422 3555666666666665543

>PLN02698 Probable pectinesterase/pectinesterase inhibitor

Probab=81.87  E-value=24  Score=37.69  Aligned_cols=113  Identities=12%  Similarity=0.102  Sum_probs=56.0

Q ss_pred             eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCC------CeE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGD------DCV  337 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gD------D~I  337 (409)
                      ++++ ..+...+.++.|. .-+..+... ...--+++|.|...     .|=|  .+.-...++||.|..-.      ..|
T Consensus       292 Al~v-~~D~~~fy~c~~~-G~QDTLy~~-~~rqyy~~C~I~G~-----vDFI--FG~a~avf~~C~i~~~~~~~~~~~~i  361 (497)
T PLN02698        292 ALSI-TSDHSVLYRCSIA-GYQDTLYAA-ALRQFYRECDIYGT-----IDFI--FGNAAAVFQNCYLFLRRPHGKSYNVI  361 (497)
T ss_pred             EEEe-cCCcEEEEcceee-cccchheeC-CCcEEEEeeEEEec-----cceE--ecccceeecccEEEEecCCCCCceEE
Confidence            4443 3556666666665 223333332 23356777888763     2222  23345677777775421      134


Q ss_pred             EeCC-----CceeEEEEEEEEcCCCee-EE-----EecCCCCCCCcEEEEEEEeEEEecccc
Q 015319          338 SIQT-----GCSNVYVHNVNCGPGHGI-SI-----GSLGKDNTKACVSNITVRDVMMHNTMN  388 (409)
Q Consensus       338 ai~s-----g~~nV~I~n~~~~~g~Gi-sI-----Gs~g~~~~~~~v~nI~v~n~~~~~~~~  388 (409)
                      ..+.     ....+.|+||++.+...+ ..     .-+|+  -...-..+.|.+++|.+.-.
T Consensus       362 TAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGR--PW~~ysr~vf~~s~l~~~I~  421 (497)
T PLN02698        362 LANGRSDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGR--PWKKYSRAIVMESYIDDAIA  421 (497)
T ss_pred             EecCCCCCCCCceEEEEeeEEecCCcccccccccceeccC--CCCCCceEEEEecccCCccc
Confidence            3322     134677888877763211 00     12332  12224567777777765433

>PLN02995 Probable pectinesterase/pectinesterase inhibitor

Probab=81.86  E-value=8.5  Score=41.43  Aligned_cols=113  Identities=12%  Similarity=0.101  Sum_probs=68.0

Q ss_pred             eEEEEeeeeEEEeceEEecCCCC----eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQC----HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~----~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      +-.....+++..++++|+|....    .+- ....+...+.+|.|..     ..|=+..... .-..++|+|...=|=| 
T Consensus       305 aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G-----~QDTLy~~~~-Rqyy~~C~I~GtVDFI-  377 (539)
T PLN02995        305 ATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEG-----YQDTLMVHSQ-RQFYRECYIYGTVDFI-  377 (539)
T ss_pred             EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEec-----ccchhccCCC-ceEEEeeEEeeccceE-
Confidence            44445677888888888887432    222 2357778888888888     4444444333 3477888887654433 


Q ss_pred             eCCCceeEEEEEEEEcCC-----CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          339 IQTGCSNVYVHNVNCGPG-----HGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       339 i~sg~~nV~I~n~~~~~g-----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      ++  .-..+|+||++..-     ..-.|--.|+. ....-.-+.|.||+|.+.
T Consensus       378 FG--~a~avf~~C~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~  427 (539)
T PLN02995        378 FG--NAAAVFQNCIILPRRPLKGQANVITAQGRA-DPFQNTGISIHNSRILPA  427 (539)
T ss_pred             ec--ccceEEeccEEEEecCCCCCcceEecCCCC-CCCCCceEEEEeeEEecC
Confidence            22  25667888877641     11233223321 122335889999999974

>PHA01732 proline-rich protein

Probab=81.39  E-value=1.9  Score=34.60  Aligned_cols=9  Identities=11%  Similarity=0.128  Sum_probs=5.0

Q ss_pred             cHHHHHHHH
Q 015319          125 DTKAFEAAW  133 (409)
Q Consensus       125 dT~Aiq~Ai  133 (409)
                      |..+|.++-
T Consensus        43 ~apki~~~~   51 (94)
T PHA01732         43 EAPKIREAQ   51 (94)
T ss_pred             chhHHHHHH
Confidence            555665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	409
3jur_A	448	The Crystal Structure Of A Hyperthermoactive Exopol		2e-16
1bhe_A	376	Polygalacturonase From Erwinia Carotovora Ssp. Caro		9e-16
1nhc_A	336	Structural Insights Into The Processivity Of Endopo		2e-11
2iq7_A	339	Crystal Structure Of The Polygalacturonase From Col		3e-10
1ia5_A	339	Polygalacturonase From Aspergillus Aculeatus Length		8e-10
1czf_A	362	Endo-Polygalacturonase Ii From Aspergillus Niger Le		2e-08
1k5c_A	335	Endopolygalacturonase I From Stereum Purpureum At 0		2e-07
1hg8_A	349	Endopolygalacturonase From The Phytopathogenic Fung		2e-06
1rmg_A	422	Rhamnogalacturonase A From Aspergillus Aculeatus Le		8e-06
2uve_A	608	Structure Of Yersinia Enterocolitica Family 28 Exop		4e-04

>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 144/343 (41%), Gaps = 54/343 (15%)
Query: 88  LAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTXXXXXXXXXXXXXXXSIMVVP 147
           LA  +  + +  V  P       N+ DFGA+G+G +D +                 ++VP
Sbjct: 6   LAKKIEEEILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVP 65
Query: 148 AESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKL--------- 198
            E VFL GP+     + ++NI   + GTI      + +   +L   +  +L         
Sbjct: 66  -EGVFLTGPI-----HLKSNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYA 119
Query: 199 ---KGITIQGKGIIDGRG--SVWW-----QDYPYDDPIDDESKLIIPLHNNTLPYKPPTP 248
              + + I G G++DG      WW     +D+ + + + ++ + +  L       +  TP
Sbjct: 120 LDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMA---ERGTP 176
Query: 249 IRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGD 308
           +   + GK   ++P+ ++FY   NV V G+ I NSP   +       V++ ++ +SS G 
Sbjct: 177 VEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTG- 235
Query: 309 SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG-----------------CSNVYVHNV 351
            PN DGI  ++ K +LI       GDD V I++G                   N+ +   
Sbjct: 236 -PNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQA 294
Query: 352 NCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKT 394
           + G   G+ IGS         V N+  R+ +  N    +R+KT
Sbjct: 295 SHG---GLVIGS----EMSGGVRNVVARNNVYMNVERALRLKT 330

>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 78/269 (28%), Positives = 118/269 (43%), Gaps = 55/269 (20%)
Query: 148 AESVFLVGPMSF-SGPYCQANIIFQLDGTIIAPTGSKDW-------------GKGLLWWL 193
           + SVFL GP+S  SG     +++     T+ A   +K +             GKG   ++
Sbjct: 48  STSVFLSGPLSLPSG----VSLLIDKGVTLRAVNNAKSFENAPSSCGVVDKNGKGCDAFI 103
Query: 194 DFTKLKGITIQGKGIIDGRGSVWWQDYP---YDDPIDDESKLIIPLHNNTLPYKPPTPIR 250
                    I G G IDG+G V  QD     ++   D + K    L  NT          
Sbjct: 104 TAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVK---KLKQNT---------- 150
Query: 251 SELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSP 310
                      P  ++   S N T+  +++ NSP  H+ F +  G      ++ +P  + 
Sbjct: 151 -----------PRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTAR 199
Query: 311 NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNC-----GPGHGISIGSLG 365
           NTDGI   +SK++ I  SN+A GDD V+I+         N++      G GHG+SIGS  
Sbjct: 200 NTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGS-- 257
Query: 366 KDNTKACVSNITVRDVMMHNTMNGVRIKT 394
                  V N+TV D+ M+ T NG+RIK+
Sbjct: 258 ---ETMGVYNVTVDDLKMNGTTNGLRIKS 283

>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 96/220 (43%), Gaps = 46/220 (20%)
Query: 181 GSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNT 240
           G K+W KG L       L  +T+    +IDG GS WW                       
Sbjct: 54  GYKEW-KGPLIRFGGKDLT-VTMADGAVIDGDGSRWWDS--------------------- 90
Query: 241 LPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHD 300
                    +    GK    KP  +  +   + T  GI I+N+P   +       V ++D
Sbjct: 91  ---------KGTNGGKT---KPKFMYIHDVEDSTFKGINIKNTPVQAISV-QATNVHLND 137
Query: 301 VSV-SSPGDSP---NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPG 356
            ++ +S GD     NTDG  +  S  V I  + +   DDC++I +G S  +     C  G
Sbjct: 138 FTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSGESISFTGGT-CSGG 196
Query: 357 HGISIGSLG--KDNTKACVSNITVRDVMMHNTMNGVRIKT 394
           HG+SIGS+G   DNT   V N+T+ D  + N+ NGVRIKT
Sbjct: 197 HGLSIGSVGGRDDNT---VKNVTISDSTVSNSANGVRIKT 233

>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 71/126 (56%), Gaps = 10/126 (7%)
Query: 275 VTGITIQNSPQCHLKFDNCIGVVVHDVSV-SSPGDSP---NTDGIHLQNSKDVLIHTSNL 330
           + G+ + N+P      ++   + V+DV + +S GDS    NTD   + +S  V I  +N+
Sbjct: 113 IKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANV 172
Query: 331 ACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLG--KDNTKACVSNITVRDVMMHNTMN 388
              DDC++I +G +N+      C  GHG+SIGS+G   DNT   V  +T+ +  + N+ N
Sbjct: 173 KNQDDCLAINSG-TNITFTGGTCSGGHGLSIGSVGGRSDNT---VKTVTISNSKIVNSDN 228
Query: 389 GVRIKT 394
           GVRIKT
Sbjct: 229 GVRIKT 234

>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Query: 255 GKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSV-SSPGDSP--- 310
           G     KP     +   N  ++G+ I NSP           + + D+++ +S GD     
Sbjct: 97  GNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGH 156
Query: 311 NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLG--KDN 368
           NTD   +  S  V I  + +   DDCV++ +G  N+Y     C  GHG+SIGS+G   DN
Sbjct: 157 NTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVGGRSDN 215
Query: 369 TKACVSNITVRDVMMHNTMNGVRIKT 394
           T   V N+T  D  + N+ NGVRIKT
Sbjct: 216 T---VKNVTFVDSTIINSDNGVRIKT 238

>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 261 KPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVS-SPGDSP---NTDGIH 316
           KP     +G  + ++TG+ I+N+P           +   DV+++ + GD+    NTD   
Sbjct: 125 KPKFFYAHGLDSSSITGLNIKNTPLMAFSV-QANDITFTDVTINNADGDTQGGHNTDAFD 183
Query: 317 LQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNI 376
           + NS  V I    +   DDC+++ +G  N++     C  GHG+SIGS+G D +   V N+
Sbjct: 184 VGNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGTCIGGHGLSIGSVG-DRSNNVVKNV 241
Query: 377 TVRDVMMHNTMNGVRIKT 394
           T+    + N+ N VRIKT
Sbjct: 242 TIEHSTVSNSENAVRIKT 259

>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 285 QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCS 344
             HL  D   G+ V D +  +     NTDG  +  + +V I    +   DDC++I  G +
Sbjct: 128 DAHLTLD---GITVDDFAGDTKNLGHNTDGFDVS-ANNVTIQNCIVKNQDDCIAINDG-N 182
Query: 345 NVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPS 401
           N+   N  C  GHGISIGS+    T   VSN+ ++   +  +M GVRIK  +    +
Sbjct: 183 NIRFENNQCSGGHGISIGSIA---TGKHVSNVVIKGNTVTRSMYGVRIKAQRTATSA 236

>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 311 NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTK 370
           NTDG  + +S  V +  +++   DDCV++ +G +N+ V N+ C  GHG+SIGS+G   + 
Sbjct: 165 NTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVVSNMYCSGGHGLSIGSVGGK-SD 222
Query: 371 ACVSNITVRDVMMHNTMNGVRIKT 394
             V  +      + N+ NG RIK+
Sbjct: 223 NVVDGVQFLSSQVVNSQNGCRIKS 246

>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 265 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVL 324
           LR     + +V  I + ++P  H   D C    V+++++   G+    DGI +  S ++ 
Sbjct: 130 LRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVWGS-NIW 187
Query: 325 IHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMH 384
           +H   +   D+CV++++  +N+ V ++ C    G ++GSLG D     V++I  R+V   
Sbjct: 188 VHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRNVYTW 244
Query: 385 NTMNGVRIKT 394
           ++     IK+
Sbjct: 245 SSNQMYMIKS 254

>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 33/221 (14%)
Query: 198 LKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIP---------LHNNTLPYKPPTP 248
            + I I G G+IDG G  W +    +  I DE    +P         +H + +  K    
Sbjct: 258 FRNIRITGSGVIDGNG--WLRAKTAE--ITDELGRSLPQYVASKNSKVHEDGILAKNQVE 313
Query: 249 IR----SELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVS 304
                  +L       + + +   G  NV + G T++N P  H   +     VV +  + 
Sbjct: 314 KAVSDGMDLKNAYGQRRSSLMTLRGVENVYLAGFTVRN-PAFHGIMNLENHNVVANGLIH 372
Query: 305 SPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSN----------VYVHNVNCG 354
              D+ N DGI   NS++V++  +    GDDC++   G              ++ N    
Sbjct: 373 QTYDANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFR 432
Query: 355 PGHG-ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKT 394
            GHG I  GS    +T A + +I   + +M+ T  G+R K+
Sbjct: 433 MGHGAIVTGS----HTGAWIEDILAENNVMYLTDIGLRAKS 469

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	8e-90
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	4e-89
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	8e-88
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	3e-84
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	6e-80
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	5e-73
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	2e-68
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	7e-67
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	9e-65
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	2e-64
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	2e-30
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	3e-30
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	1e-28
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	1e-20
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	7e-20
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	1e-13
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	5e-12
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	2e-05
2x3h_A	542	K5 lyase, K5A lyase; bacteriophage, glycosaminogly	8e-04

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448

 Score =  277 bits (711), Expect = 8e-90
 Identities = 82/329 (24%), Positives = 132/329 (40%), Gaps = 42/329 (12%)

Query: 99  DVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMS 158
            V  P       N+ DFGA+G+G +D +++F+ A     K     ++VP   VFL GP+ 
Sbjct: 17  HVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPE-GVFLTGPIH 75

Query: 159 FSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLW------------WLDFTKLKGITIQGK 206
                 ++NI   + GTI      + +   +L              +     + + I G 
Sbjct: 76  L-----KSNIELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGS 130

Query: 207 GIIDGRG--SVWWQDYPYDDPIDDESKLIIPLHNNTLP--YKPPTPIRSELSGKMPSIKP 262
           G++DG      WW      D    E           L    +  TP+   + GK   ++P
Sbjct: 131 GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRP 190

Query: 263 TALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKD 322
           + ++FY   NV V G+ I NSP   +       V++ ++ +SS    PN DGI  ++ K 
Sbjct: 191 SFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKY 248

Query: 323 VLIHTSNLACGDDCVSIQTG-----------CSNVYVHN--VNCGPGH-GISIGSLGKDN 368
           +LI       GDD V I++G              + V +  V     H G+ IGS     
Sbjct: 249 MLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGS----E 304

Query: 369 TKACVSNITVRDVMMHNTMNGVRIKTWQV 397
               V N+  R+ +  N    +R+KT   
Sbjct: 305 MSGGVRNVVARNNVYMNVERALRLKTNSR 333

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422

 Score =  275 bits (704), Expect = 4e-89
 Identities = 59/295 (20%), Positives = 114/295 (38%), Gaps = 51/295 (17%)

Query: 101 PPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFS 160
                 +   N+  +GA  +  +D   A  +AWAA CK    ++ +P+ +  L   ++ +
Sbjct: 12  ASTKGATKTCNILSYGAVADNSTDVGPAITSAWAA-CK-SGGLVYIPSGNYALNTWVTLT 69

Query: 161 GPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDY 220
           G    +    QLDG I            ++   D T  +  +   KG + G G V+  + 
Sbjct: 70  GG---SATAIQLDGIIYRTG---TASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEG 123

Query: 221 PYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITI 280
            Y                                          LR     + +V  I +
Sbjct: 124 TY--------------------------------------GARILRLTDVTHFSVHDIIL 145

Query: 281 QNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340
            ++P  H   D C    V+++++    +    DGI +  S ++ +H   +   D+CV+++
Sbjct: 146 VDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVK 203

Query: 341 TGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTW 395
           +  +N+ V ++ C    G ++GSLG D     V++I  R+V   ++     IK+ 
Sbjct: 204 SPANNILVESIYCNWSGGCAMGSLGADTD---VTDIVYRNVYTWSSNQMYMIKSN 255

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376

 Score =  270 bits (692), Expect = 8e-88
 Identities = 84/320 (26%), Positives = 133/320 (41%), Gaps = 63/320 (19%)

Query: 100 VPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSF 159
           V  P   SS   +K         S  T   + A     + +A  +   + SVFL GP+S 
Sbjct: 6   VSEPKTPSSCTTLKADS------STATSTIQKALNNCDQGKAVRLSAGSTSVFLSGPLSL 59

Query: 160 SGPYCQANIIFQLDG--TIIAPTGSKDW-------------GKGLLWWLDFTKLKGITIQ 204
                 + +   +D   T+ A   +K +             GKG   ++         I 
Sbjct: 60  -----PSGVSLLIDKGVTLRAVNNAKSFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIY 114

Query: 205 GKGIIDGRGSVWWQDYP---YDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIK 261
           G G IDG+G V  QD     ++   D + K                        K+    
Sbjct: 115 GPGTIDGQGGVKLQDKKVSWWELAADAKVK------------------------KLKQNT 150

Query: 262 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSK 321
           P  ++   S N T+  +++ NSP  H+ F +  G      ++ +P  + NTDGI   +SK
Sbjct: 151 PRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSK 210

Query: 322 DVLIHTSNLACGDDCVSIQTG-----CSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNI 376
           ++ I  SN+A GDD V+I+         N+ + + + G GHG+SIGS         V N+
Sbjct: 211 NITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSET-----MGVYNV 265

Query: 377 TVRDVMMHNTMNGVRIKTWQ 396
           TV D+ M+ T NG+RIK+ +
Sbjct: 266 TVDDLKMNGTTNGLRIKSDK 285

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608

 Score =  268 bits (685), Expect = 3e-84
 Identities = 76/402 (18%), Positives = 142/402 (35%), Gaps = 58/402 (14%)

Query: 36  RHGRSSNSVSLSKKNNKGNTHRKGGHHNYHNGKPKPKPKPKPKAPSHNKSPPLAPAVPTK 95
               +   +     N+K N   K    N+     KP+   +    +      L+ A  +K
Sbjct: 87  NFSPAKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADGSLSVA--SK 144

Query: 96  PVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVG 155
           P+      S    + NV+DFGA  +G + +TKA + A  +        + +PA   +  G
Sbjct: 145 PI--TAKTSAKPQIVNVRDFGAIDDGKTLNTKAIQQAIDSCKP--GCRVEIPA-GTYKSG 199

Query: 156 PMSFSGPYCQANIIFQLD--GTIIAPTGSKDWGKGLLWW-------------------LD 194
            +       ++++   L     ++      D+  G   +                     
Sbjct: 200 ALWL-----KSDMTLNLQAGAILLGSENPDDYPAGYRLYPYSTIERPASLINAIDPNNSK 254

Query: 195 FTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTL---------PYKP 245
               + I I G G+IDG G +  +     D +       +   N+ +           + 
Sbjct: 255 PGTFRNIRITGSGVIDGNGWLRAKTAEITDELGRSLPQYVASKNSKVHEDGILAKNQVEK 314

Query: 246 PTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSS 305
                 +L       + + +   G  NV + G T++N     +       VV + +    
Sbjct: 315 AVSDGMDLKNAYGQRRSSLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGLIHQ- 373

Query: 306 PGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG----------CSNVYVHNVNCGP 355
             D+ N DGI   NS++V++  +    GDDC++   G              ++ N     
Sbjct: 374 TYDANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRM 433

Query: 356 GHG-ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           GHG I  GS    +T A + +I   + +M+ T  G+R K+  
Sbjct: 434 GHGAIVTGS----HTGAWIEDILAENNVMYLTDIGLRAKSTS 471

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362

 Score =  249 bits (638), Expect = 6e-80
 Identities = 62/295 (21%), Positives = 107/295 (36%), Gaps = 53/295 (17%)

Query: 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQ 165
            + F         +  +  T A   A  A C  +  + + VPA +         +G    
Sbjct: 15  GATFASASPIEARDSCTFTTAAAAKAGKAKCSTITLNNIEVPAGTTLD-----LTGL--T 67

Query: 166 ANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDP 225
           +      +GT       ++W  G L  +    +  +T     +I+  G+ WW        
Sbjct: 68  SGTKVIFEGTTTFQY--EEWA-GPLISMSGEHIT-VTGASGHLINCDGARWWDGK----- 118

Query: 226 IDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQ 285
                                        G     KP     +G  + ++TG+ I+N+P 
Sbjct: 119 -----------------------------GTSGKKKPKFFYAHGLDSSSITGLNIKNTPL 149

Query: 286 CHLKFDNCIGVVVHDVSVSSP----GDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQT 341
                     +   DV++++         NTD   + NS  V I    +   DDC+++ +
Sbjct: 150 MAFSV-QANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNS 208

Query: 342 GCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           G  N++     C  GHG+SIGS+G   +   V N+T+    + N+ N VRIKT  
Sbjct: 209 G-ENIWFTGGTCIGGHGLSIGSVGD-RSNNVVKNVTIEHSTVSNSENAVRIKTIS 261

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339

 Score =  231 bits (590), Expect = 5e-73
 Identities = 60/277 (21%), Positives = 101/277 (36%), Gaps = 50/277 (18%)

Query: 124 DDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSK 183
            D  A     A+   +  + +VVPA +   +          ++       G        K
Sbjct: 6   TDAAAAIKGKASCTSIILNGIVVPAGTTLDMTG-------LKSGTTVTFQGKTTFGY--K 56

Query: 184 DWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPY 243
           +W +G L     T +  I       ID +GS WW                          
Sbjct: 57  EW-EGPLISFSGTNIN-INGASGHSIDCQGSRWWDSK----------------------- 91

Query: 244 KPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSV 303
                            KP     +   +  + G+ + N+P      ++   + V+DV +
Sbjct: 92  ----------GSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVII 141

Query: 304 SSPGDSP----NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGI 359
            +         NTD   + +S  V I  +N+   DDC++I +G +N+      C  GHG+
Sbjct: 142 DNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSG-TNITFTGGTCSGGHGL 200

Query: 360 SIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           SIGS+G   +   V  +T+ +  + N+ NGVRIKT  
Sbjct: 201 SIGSVGG-RSDNTVKTVTISNSKIVNSDNGVRIKTVS 236

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339

 Score =  218 bits (558), Expect = 2e-68
 Identities = 64/283 (22%), Positives = 103/283 (36%), Gaps = 59/283 (20%)

Query: 123 SDDTKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTG 181
             +  +  +    +C  +  S + VP+ +                ++    DGT +  +G
Sbjct: 8   GSNGASSASKSKTSCSTIVLSNVAVPSGTTL--------------DLTKLNDGTHVIFSG 53

Query: 182 SKDWG----KGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLH 237
              +G     G L  +  + L  IT      I+G GS WW                    
Sbjct: 54  ETTFGYKEWSGPLISVSGSDLT-ITGASGHSINGDGSRWWDGE----------------- 95

Query: 238 NNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVV 297
                            G     KP     +   N  ++G+ I NSP           + 
Sbjct: 96  ----------------GGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLT 139

Query: 298 VHDVSVSSPGDSP----NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNC 353
           + D+++ +         NTD   +  S  V I  + +   DDCV++ +G  N+Y     C
Sbjct: 140 LKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYC 198

Query: 354 GPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
             GHG+SIGS+G   +   V N+T  D  + N+ NGVRIKT  
Sbjct: 199 SGGHGLSIGSVGG-RSDNTVKNVTFVDSTIINSDNGVRIKTNI 240

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349

 Score =  215 bits (549), Expect = 7e-67
 Identities = 54/285 (18%), Positives = 97/285 (34%), Gaps = 54/285 (18%)

Query: 124 DDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSK 183
            +      A ++   +  +   VP      +          Q +      GT    T + 
Sbjct: 6   TEYSGLATAVSSCKNIVLNGFQVPTGKQLDLSS-------LQNDSTVTFKGTTTFATTAD 58

Query: 184 DWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPY 243
           +        +  + +  IT     +IDG G  +W                    N+    
Sbjct: 59  NDFN--PIVISGSNIT-ITGASGHVIDGNGQAYWDGKG---------------SNSNSNQ 100

Query: 244 KPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSV 303
           KP                   +    + N  +T + IQN P           + +  + +
Sbjct: 101 KP---------------DHFIVVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISGLIL 145

Query: 304 S------------SPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNV 351
                        S   + NTDG  + +S  V +  +++   DDCV++ +G +N+ V N+
Sbjct: 146 DNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVVSNM 204

Query: 352 NCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
            C  GHG+SIGS+G   +   V  +      + N+ NG RIK+  
Sbjct: 205 YCSGGHGLSIGSVGG-KSDNVVDGVQFLSSQVVNSQNGCRIKSNS 248

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335

 Score =  209 bits (534), Expect = 9e-65
 Identities = 60/279 (21%), Positives = 94/279 (33%), Gaps = 61/279 (21%)

Query: 126 TKAFEAAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD 184
               +A   A C  V  +   VPA +  ++ P               + G I     + D
Sbjct: 6   KSVDDAKDIAGCSAVTLNGFTVPAGNTLVLNPDK--------GATVTMAGDITFAKTTLD 57

Query: 185 WGKGLLWWLDFTKLKGITIQGKG-IIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPY 243
                   L      GI   G   I DG G+++W     ++                   
Sbjct: 58  G------PLFTIDGTGINFVGADHIFDGNGALYWDGKGTNNGTH---------------- 95

Query: 244 KPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCI------GVV 297
                            KP         + T     + NSP   +            G+ 
Sbjct: 96  -----------------KPHPFLKIKG-SGTYKKFEVLNSPAQAISVGPTDAHLTLDGIT 137

Query: 298 VHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGH 357
           V D +  +     NTDG  + ++ +V I    +   DDC++I  G +N+   N  C  GH
Sbjct: 138 VDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDCIAINDG-NNIRFENNQCSGGH 195

Query: 358 GISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
           GISIGS+        VSN+ ++   +  +M GVRIK  +
Sbjct: 196 GISIGSIATGKH---VSNVVIKGNTVTRSMYGVRIKAQR 231

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336

 Score =  208 bits (532), Expect = 2e-64
 Identities = 66/271 (24%), Positives = 101/271 (37%), Gaps = 52/271 (19%)

Query: 131 AAWAAACK-VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGL 189
           +   ++C  V  S + VPA           S            +GT       K+W KG 
Sbjct: 12  SESISSCSDVVLSSIEVPAGETLD-----LSDA--ADGSTITFEGTTSFGY--KEW-KGP 61

Query: 190 LWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPI 249
           L       L  +T+    +IDG GS WW     +                          
Sbjct: 62  LIRFGGKDLT-VTMADGAVIDGDGSRWWDSKGTNGGKT---------------------- 98

Query: 250 RSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSV----SS 305
                      KP  +  +   + T  GI I+N+P   +       V ++D ++      
Sbjct: 99  -----------KPKFMYIHDVEDSTFKGINIKNTPVQAISV-QATNVHLNDFTIDNSDGD 146

Query: 306 PGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLG 365
                NTDG  +  S  V I  + +   DDC++I +G  ++      C  GHG+SIGS+G
Sbjct: 147 DNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCSGGHGLSIGSVG 205

Query: 366 KDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
             +    V N+T+ D  + N+ NGVRIKT  
Sbjct: 206 GRDD-NTVKNVTISDSTVSNSANGVRIKTIY 235

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609

 Score =  121 bits (304), Expect = 3e-30
 Identities = 44/293 (15%), Positives = 85/293 (29%), Gaps = 59/293 (20%)

Query: 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQA 166
               +VK +GAKG+GV+DD +AFE A  +   V      VP  +  +   +    P    
Sbjct: 20  QFGVSVKTYGAKGDGVTDDIRAFEKAIESGFPV-----YVPYGTFMVSRGIKL--PSNTV 72

Query: 167 NIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKL-KGITIQGKGIIDGRGSVWWQDYPYDDP 225
                    +I    S   G+ L++  + T   + I +     +DG      Q       
Sbjct: 73  LTGAGKRNAVIRFMDSVGRGESLMYNENVTTGNENIFLSS-FTLDGNNKRLGQG------ 125

Query: 226 IDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQ 285
                  I  +  +                       + L      NV +  I   +   
Sbjct: 126 -------ISGIGGSR---------------------ESNLSIRACHNVYIRDIEAVDCTL 157

Query: 286 CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKD--VLIHTSNLACGDDCVSIQTGC 343
                 + I     D++          DG    N  +   + +      GDD ++     
Sbjct: 158 ------HGI-----DITCGGLDYPYLGDGTTAPNPSENIWIENCEATGFGDDGITT-HHS 205

Query: 344 SNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
             + + N         +  +  + +      ++ + +        G+ IK   
Sbjct: 206 QYINILNCYSHDPRLTANCNGFEIDDG--SRHVVLSNNRSKGCYGGIEIKAHG 256

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464

 Score =  116 bits (290), Expect = 1e-28
 Identities = 40/314 (12%), Positives = 88/314 (28%), Gaps = 62/314 (19%)

Query: 88  LAPAVPTKPVYDVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVP 147
           ++P       + V P     +   V DFGA GN  SDD+ A + A  A  +      ++ 
Sbjct: 1   VSPKTYKDADFYVAPTQQDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLI 60

Query: 148 AESVFLVGPMSFSGPYCQANIIFQLD-GTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGK 206
               +    +       ++N+  +++   II PT + D     L    F       ++  
Sbjct: 61  PNGTYHFLGIQM-----KSNVHIRVESDVIIKPTWNGDGKNHRL----FEVGVNNIVRNF 111

Query: 207 GIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALR 266
               G G+ +  D+                                             +
Sbjct: 112 SF-QGLGNGFLVDF----------------------------------KDSRDKNLAVFK 136

Query: 267 FYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIH 326
                N  ++  TI ++                 + V     +           + +  +
Sbjct: 137 LGDVRNYKISNFTIDDNKTIF-----------ASILVDVTERNGRLHWSRNGIIERIKQN 185

Query: 327 TSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGS---LGKDNTKACVSNITVRDVMM 383
            +        +    G  N+   N++   G  + + +   L K+  +  + NI   ++  
Sbjct: 186 NAL---FGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNYKQGGIRNIFADNIRC 242

Query: 384 HNTMNGVRIKTWQV 397
              +  V      +
Sbjct: 243 SKGLAAVMFGPHFM 256

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377

 Score = 92.2 bits (228), Expect = 1e-20
 Identities = 55/303 (18%), Positives = 105/303 (34%), Gaps = 18/303 (5%)

Query: 110 FNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANII 169
           +NVKDFGA G+GVSDD  + +AA  AA       + +PA   + V      G  C   ++
Sbjct: 3   YNVKDFGALGDGVSDDRASIQAAIDAAYAAGGGTVYLPA-GEYRVSAAGEPGDGC---LM 58

Query: 170 FQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDE 229
            +    +      +   K     +D +  K   +      +   +   +D   D   D+ 
Sbjct: 59  LKDGVYLAGAGMGETVIK----LIDGSDQKITGMVRSAYGEETSNFGMRDLTLDGNRDNT 114

Query: 230 SKLIIPLHNNTLPYKPPTPIRSELSGKM--PSIKPTALRFYGSFNVTVTGITIQNSPQCH 287
           S  +    N  +P          +                  + N+T+      ++    
Sbjct: 115 SGKVDGWFNGYIPGGDGADRDVTIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDG 174

Query: 288 LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLAC--GDDCVSIQTGCSN 345
              D  +  V  +        + +  G ++  S    + T+N+A   G   + +Q G   
Sbjct: 175 FVADYLVDSVFENNVA----YANDRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRG-LE 229

Query: 346 VYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMH-NTMNGVRIKTWQVMIPSGTQ 404
                 N     G    +  +       S+IT+++  +H N  +GVR+   Q +     Q
Sbjct: 230 DLALPSNILIDGGAYYDNAREGVLLKMTSDITLQNADIHGNGSSGVRVYGAQDVQILDNQ 289

Query: 405 CYN 407
            ++
Sbjct: 290 IHD 292

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549

 Score = 90.7 bits (224), Expect = 7e-20
 Identities = 30/209 (14%), Positives = 53/209 (25%), Gaps = 36/209 (17%)

Query: 191 WWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIR 250
                +    +   G G++ G   VW+ D        DE        NN           
Sbjct: 237 AVEFLSTASEVKASGHGVLSGEQYVWYAD-------PDEGYQKASGANNNGLRMWRG--- 286

Query: 251 SELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKF----DNCIGVVVHDVSVSSP 306
                              S    + G+T+   P   + +     + I   V D      
Sbjct: 287 --------------TLGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGA 332

Query: 307 GDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGK 366
                TDG+ +      ++        DD + +    SNV   N+         +   G 
Sbjct: 333 -FYGQTDGLEM--YPGTILQDVFYHTDDDGLKM--YYSNVTARNIVMWKESVAPVVEFGW 387

Query: 367 DNTKACVSNITVRDV-MMHNTMNGVRIKT 394
                   N+   +V ++H          
Sbjct: 388 TP--RNTENVLFDNVDVIHQAYANAGNNP 414

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600

 Score = 71.8 bits (175), Expect = 1e-13
 Identities = 43/329 (13%), Positives = 88/329 (26%), Gaps = 75/329 (22%)

Query: 110 FNVKDFGAKGNGV-------SDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSF--- 159
            ++ DF    +G         D  +  +AA           + +PA   + +G       
Sbjct: 41  VSLWDFHCDPSGNVIQPGPNVDSRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGI 100

Query: 160 ---SGP-YCQANIIFQLDGTIIAPTGSKDW------GKGLLWWLDFTKLKGITIQGKGII 209
              SG    ++N+   ++G I               G           L+   I G G++
Sbjct: 101 AGHSGIIQLRSNVNLNIEGRIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVV 160

Query: 210 DGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYG 269
           D  G  +                                                + F  
Sbjct: 161 DFGGYEFGASSQL---------------------------------------RNGVAFGR 181

Query: 270 SFNVTVTGITIQNSPQC-------HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKD 322
           S+N +VTGIT QN           +    NC       +++ +   + +   +++ N   
Sbjct: 182 SYNCSVTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNSSVNADHSTVYV-NCPY 240

Query: 323 VLIHTSNLACGDD-----CVSIQTGCSNVYVHN-VNCGPGHGISIGSLGKDNT--KACVS 374
             + +   +           S+Q    + +       G   G  +     +     +   
Sbjct: 241 SGVESCYFSMSSSFARNIACSVQLHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAY 300

Query: 375 NITVRDVMMHNTMNGVRIKTWQVMIPSGT 403
           N+ V + +       V + +      SG 
Sbjct: 301 NMQVENNIAVIYGQFVILGSDVTATVSGH 329

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758

 Score = 66.6 bits (161), Expect = 5e-12
 Identities = 45/304 (14%), Positives = 90/304 (29%), Gaps = 31/304 (10%)

Query: 101 PPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFS 160
             P  +    NVK++GAKG+G +DDT A +AA  A  +          +   +  P    
Sbjct: 41  GNPGGYPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFP---- 96

Query: 161 GPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDY 220
                    +++   ++    ++  G         T L      G  +ID    +     
Sbjct: 97  ------PGTYKVSSPLVVLYQTQLIGD---AKNLPTLLAAPNFSGIALIDADPYLAGGAQ 147

Query: 221 PYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITI 280
            Y +  +    +   + +        T I           + T+L      N+     T 
Sbjct: 148 YYVNQNNFFRSVRNFVIDLRQVSGSATGIH------WQVSQATSLI-----NIVFQMSTA 196

Query: 281 QNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340
             +    +  +N  G  + D+  +        +      ++   +        +  ++  
Sbjct: 197 AGNQHQGIFMENGSGGFLGDLVFN------GGNIGATFGNQQFTVRNLTFNNANTAINAI 250

Query: 341 TGCSNVYVHNVNCGPGHGISIGSLGKDNTKA-CVSNITVRDVMMHNTMNGVRIKTWQVMI 399
                 +          G  +   G  NT A  V    + D ++ NT   VR        
Sbjct: 251 WNWGWTFQRITINNCQVGFDLTQGGTSNTGAQGVGAEAIIDAVVTNTQTFVRWSGASSGH 310

Query: 400 PSGT 403
             G+
Sbjct: 311 LQGS 314

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 41/262 (15%), Positives = 85/262 (32%), Gaps = 18/262 (6%)

Query: 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQA 166
               ++ DFG   +GV+D+ +A + A  A   + +   +    S   VG +  S      
Sbjct: 49  KEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIVGSTLLIPG 108

Query: 167 NIIFQLDG--TIIAPTGSKDWGKGLLWWLDFT---KLKGITIQGKGIIDGRGSVWWQDYP 221
            +  +  G  + +            L +   T    L+ I + G    +G  +    +  
Sbjct: 109 GVNIRGVGKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAEDS 168

Query: 222 YDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGS-FNVTVTGITI 280
               +       + ++     Y       S+            L F G   +V+V+    
Sbjct: 169 VIRQVYGWVFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRVGLHFLGQCVSVSVSSCHF 228

Query: 281 QNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQ 340
                 +   D   G+ +   + +   ++  ++ I L +   + I   N     DC+ + 
Sbjct: 229 SRG---NYSADESFGIRIQPQTYAWSSEAVRSEAIILDSE-TMCIGFKNAVYVHDCLDLH 284

Query: 341 --------TGCSNVYVHNVNCG 354
                    G + V + NVN G
Sbjct: 285 MEQLDLDYCGSTGVVIENVNGG 306

>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Length = 542

 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 36/189 (19%), Positives = 66/189 (34%), Gaps = 22/189 (11%)

Query: 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQA 166
           + V   K FGA G+  +DDT+   A+  +   V  S      + VF    ++ +  YC  
Sbjct: 62  ARVLTSKPFGAAGDATTDDTEVIAASLNSQKAVTIS------DGVFSSSGINSN--YC-- 111

Query: 167 NIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIID----------GRGSVW 216
           N+  +  G +   + + ++   +       +L  IT++     D          G   V 
Sbjct: 112 NLDGRGSGVLSHRSSTGNY--LVFNNPRTGRLSNITVESNKATDTTQGQQVSLAGGSDVT 169

Query: 217 WQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVT 276
             D  + +       LI   ++          IR   SG   +     +    S N  + 
Sbjct: 170 VSDVNFSNVKGTGFSLIAYPNDAPPDGLMIKGIRGSYSGYATNKAAGCVLADSSVNSLID 229

Query: 277 GITIQNSPQ 285
            +  +N PQ
Sbjct: 230 NVIAKNYPQ 238

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	100.0
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	100.0
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	100.0
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	100.0
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	100.0
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	100.0
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	100.0
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	100.0
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	100.0
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	100.0
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	100.0
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	100.0
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	100.0
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	100.0
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	100.0
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	99.98
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	99.97
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	99.96
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	99.88
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	99.72
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	99.69
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	99.68
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	99.65
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	99.64
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	99.63
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	99.63
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	99.59
1ogo_X	574	Dextranase; hydrolase, dextran degradation, glycos	99.58
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	99.54
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	99.53
2inu_A	410	Insulin fructotransferase; right-handed parallel b	99.52
1x0c_A	549	Isopullulanase; glycoside hydrolase family 49, gly	99.52
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	99.05
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	99.0
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	98.98
1h80_A	464	IOTA-carrageenase; hydrolase, IOTA-carrageenan dou	98.91
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	98.9
2pyg_A	377	Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli	98.47
1gq8_A	319	Pectinesterase; hydrolase, carboxylic ester hydrol	98.42
2x6w_A	600	Tail spike protein; viral protein, beta-helix, hyd	98.41
1xg2_A	317	Pectinesterase 1; protein-protein complex, beta he	98.38
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	98.38
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	98.35
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	98.34
1pcl_A	355	Pectate lyase E; lyase (acting on polysaccharides)	98.3
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	98.27
2x3h_A	542	K5 lyase, K5A lyase; bacteriophage, glycosaminogly	98.25
1pxz_A	346	Major pollen allergen JUN A 1; parallel beta-helix	98.23
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	98.16
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	98.14
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	98.11
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	98.1
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	98.08
3zsc_A	340	Pectate trisaccharide-lyase; hydrolase; HET: ADA A	98.05
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	98.05
1air_A	353	Pectate lyase C, PELC; pectate cleavage, pectinoly	98.03
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	98.03
2qy1_A	330	Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca	98.02
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	97.94
1qcx_A	359	Pectin lyase B; beta-helix protein, plant cell WAL	97.87
2nsp_A	342	Pectinesterase A; michaelis complex, hydrolase; HE	97.79
3uw0_A	364	Pectinesterase; right-handed beta-helix, carbohydr	97.77
1idk_A	359	Pectin lyase A; signal, glycoprotein, multigene fa	97.73
1pe9_A	361	Pectate lyase A; parallel beta helix; 1.60A {Erwin	97.64
1vbl_A	416	Pectate lyase 47; PL 47, thermostable, bacillus su	97.55
2inu_A	410	Insulin fructotransferase; right-handed parallel b	97.47
1ru4_A	400	Pectate lyase, PEL9A; parallel beta-helix; 1.60A {	97.47
2o04_A	399	Pectate lyase, PL; hexasaccharide compound II, cal	97.28
3vmv_A	326	Pectate lyase; polysaccharide lyase family 1, beta	97.23
1dbg_A	506	Chondroitinase B; beta helix, polysaccharide lyase	96.33
2vbk_A	514	Tailspike-protein; viral adhesion protein, viral p	96.27
3grh_A	422	YBHC, acyl-COA thioester hydrolase YBGC; beta-heli	95.93
1gq8_A	319	Pectinesterase; hydrolase, carboxylic ester hydrol	94.55
1xg2_A	317	Pectinesterase 1; protein-protein complex, beta he	94.53
2nsp_A	342	Pectinesterase A; michaelis complex, hydrolase; HE	94.01
3t9g_A	196	Pectate lyase; PL3, parallel beta-helix; HET: GOL;	92.91
3uw0_A	364	Pectinesterase; right-handed beta-helix, carbohydr	91.34
1ee6_A	197	Pectate lyase; parallel beta-helix, high-alkaline,	89.14
3b4n_A	344	Endo-pectate lyase; pectin, galacturonic acid, rig	88.23
3t9g_A	196	Pectate lyase; PL3, parallel beta-helix; HET: GOL;	88.01
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	84.17

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=100.00  E-value=4.9e-55  Score=450.03  Aligned_cols=285  Identities=27%  Similarity=0.416  Sum_probs=239.8

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCccc
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDW  185 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~  185 (409)
                      ++.+++|++|||+|||++|||+|||+||++|++.++++|+||+| +|+++||.|     +++++|+++|+|++++++.+|
T Consensus        24 ~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~~~ggg~v~vP~G-~yl~~~l~l-----~s~v~l~l~gtL~~s~d~~~y   97 (448)
T 3jur_A           24 PDREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPEG-VFLTGPIHL-----KSNIELHVKGTIKFIPDPERY   97 (448)
T ss_dssp             CSCEEEGGGGTCCCEEEEECHHHHHHHHHHHHHHTCEEEEECSS-EEEESCEEC-----CTTEEEEESSEEEECCCGGGG
T ss_pred             CCcEEEEEecccCCCCCeecHHHHHHHHHhhhhcCCeEEEECCC-cEEEeeeEe-----CCCcEEEEEEEEEecCCHHHh
Confidence            34789999999999999999999999999877778999999999 899999998     789999999999999999888


Q ss_pred             -CC------C-----ceeeEEEecccCeeeeeceEEeCCC--cccccCCCCC----CCCCcc----ccccccccCCCCCC
Q 015319          186 -GK------G-----LLWWLDFTKLKGITIQGKGIIDGRG--SVWWQDYPYD----DPIDDE----SKLIIPLHNNTLPY  243 (409)
Q Consensus       186 -~~------g-----~~~~i~~~~~~nVtI~G~G~IdG~G--~~~w~~~~~~----~p~~~~----~~~~~~~~~~~~~~  243 (409)
                       +.      +     ..+||.+.+++||+|+|+|+|||+|  +.||......    .+....    .+.+..      +.
T Consensus        98 ~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~------~~  171 (448)
T 3jur_A           98 LPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKE------MA  171 (448)
T ss_dssp             CSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHH------HH
T ss_pred             CcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhh------hh
Confidence             21      1     2468999999999999999999999  8999753100    000000    000000      00


Q ss_pred             CCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccE
Q 015319          244 KPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDV  323 (409)
Q Consensus       244 ~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV  323 (409)
                      .+..+...++.+.....||++|.|.+|+|++|+|++++|+++|++++..|++|+|+|++|.++  ++|+|||++.+|+||
T Consensus       172 ~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV  249 (448)
T 3jur_A          172 ERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYM  249 (448)
T ss_dssp             HHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEE
T ss_pred             cccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCE
Confidence            001122222223344579999999999999999999999999999999999999999999986  589999999999999


Q ss_pred             EEEeeEEeeCCCeEEeCCC-----------ceeEEEEEEEE--cCCC-eeEEEecCCCCCCCcEEEEEEEeEEEecccce
Q 015319          324 LIHTSNLACGDDCVSIQTG-----------CSNVYVHNVNC--GPGH-GISIGSLGKDNTKACVSNITVRDVMMHNTMNG  389 (409)
Q Consensus       324 ~I~n~~i~~gDD~Iai~sg-----------~~nV~I~n~~~--~~g~-GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~G  389 (409)
                      +|+||+|.++||||+++++           ++||+|+||+|  ..+| ||+|||++    .+.|+||+|+||+|.++.+|
T Consensus       250 ~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~G  325 (448)
T 3jur_A          250 LIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERA  325 (448)
T ss_dssp             EEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEE
T ss_pred             EEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccce
Confidence            9999999999999999998           89999999999  6677 89999984    56799999999999999999


Q ss_pred             EEEEeecCCCCeEEEEEeC
Q 015319          390 VRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       390 i~Ikt~~G~~g~v~~~~~~  408 (409)
                      ++||||.|++|+|+||+.+
T Consensus       326 irIKt~~g~gG~v~nI~f~  344 (448)
T 3jur_A          326 LRLKTNSRRGGYMENIFFI  344 (448)
T ss_dssp             EEEECCTTTCSEEEEEEEE
T ss_pred             EEEEEEcCCCceEeeEEEE
Confidence            9999999999999999864

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=100.00  E-value=3.2e-49  Score=399.21  Aligned_cols=254  Identities=30%  Similarity=0.449  Sum_probs=221.5

Q ss_pred             ceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECC---ceEEEeCCcccCCCccccceEEEecc--eEEcCCCC
Q 015319          108 SVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPA---ESVFLVGPMSFSGPYCQANIIFQLDG--TIIAPTGS  182 (409)
Q Consensus       108 ~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~---G~~y~~~~i~l~g~~~~s~~~l~l~G--tl~~~~~~  182 (409)
                      .+++|++||     .+|||+|||+||+ ||.. |++|+||+   | +|++++|.|     +++++|++++  +|+++.+.
T Consensus        13 ~~~~v~~~G-----~~~dT~aiq~Ai~-ac~~-Gg~v~~~~~~~g-~yl~g~i~l-----~s~vtL~l~~Ga~L~~s~~~   79 (376)
T 1bhe_A           13 SSCTTLKAD-----SSTATSTIQKALN-NCDQ-GKAVRLSAGSTS-VFLSGPLSL-----PSGVSLLIDKGVTLRAVNNA   79 (376)
T ss_dssp             CEEEEEECC-----SSBCHHHHHHHHT-TCCT-TCEEEEECSSSS-EEEESCEEC-----CTTCEEEECTTCEEEECSCS
T ss_pred             CeEEECCCC-----CCccHHHHHHHHH-Hhcc-CCcEEEECCCCc-eEEEeEEEE-----CCCCEEEECCCeEEEeCCCH
Confidence            369999986     4899999999998 5655 45555554   6 999999999     7899999995  99999998


Q ss_pred             cccCCC-------------ceeeEEEecccCeeeeeceEEeCCC--------cccccCCCCCCCCCccccccccccCCCC
Q 015319          183 KDWGKG-------------LLWWLDFTKLKGITIQGKGIIDGRG--------SVWWQDYPYDDPIDDESKLIIPLHNNTL  241 (409)
Q Consensus       183 ~~~~~g-------------~~~~i~~~~~~nVtI~G~G~IdG~G--------~~~w~~~~~~~p~~~~~~~~~~~~~~~~  241 (409)
                      .+|...             ..+||.+.+++||+|+|.|+|||+|        +.||+....       .           
T Consensus        80 ~~y~~~~~~~g~~~~~g~~~~~~I~~~~~~ni~I~G~G~IdG~G~~~~~~~~~~ww~~~~~-------~-----------  141 (376)
T 1bhe_A           80 KSFENAPSSCGVVDKNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAAD-------A-----------  141 (376)
T ss_dssp             GGGBSSTTCSSCEESCSCCBCCSEEEESCBSCEEECSSEEECCTTSCCSSSSSCTTHHHHH-------H-----------
T ss_pred             HHCcCCCccccccccCCCCcccEEEEECCEeEEEEeCEEEECCCCcccCCCcccccccccc-------c-----------
Confidence            888542             3579999999999999999999999        467753100       0           


Q ss_pred             CCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcc
Q 015319          242 PYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSK  321 (409)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~  321 (409)
                                .. ......||.+|.|.+|+|++|+|++|+|+++|++++..|++++|+|++|.++.+++|+|||++.+|+
T Consensus       142 ----------~~-~~~~~~rp~~i~~~~~~nv~I~~iti~nsp~~~i~~~~~~~v~i~~v~I~~~~~~~NtDGid~~~s~  210 (376)
T 1bhe_A          142 ----------KV-KKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSK  210 (376)
T ss_dssp             ----------HH-HTCEECCCCSEEEESCEEEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCE
T ss_pred             ----------cc-cCccCCCCeEEEEEcceEEEEEeEEEECCCcEEEEEeCCCcEEEEeEEEECCCCCCCCceEeecCCc
Confidence                      00 0112248999999999999999999999999999999999999999999998888999999999999


Q ss_pred             cEEEEeeEEeeCCCeEEeCC-----CceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeec
Q 015319          322 DVLIHTSNLACGDDCVSIQT-----GCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ  396 (409)
Q Consensus       322 nV~I~n~~i~~gDD~Iai~s-----g~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~  396 (409)
                      ||+|+||+|.++||||++++     +++||+|+||+|.++|||+|||++.     .|+||+|+||+|.++.+|+|||||+
T Consensus       211 nV~I~n~~i~~gDDcIaiks~~~~~~s~nI~I~n~~~~~ghGisiGSe~~-----~v~nV~v~n~~~~~t~~GirIKt~~  285 (376)
T 1bhe_A          211 NITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSETM-----GVYNVTVDDLKMNGTTNGLRIKSDK  285 (376)
T ss_dssp             EEEEESCEEECSSCSEEEEECTTSCCEEEEEEEEEEECSSSCEEEEEEES-----SEEEEEEEEEEEESCSEEEEEECCT
T ss_pred             eEEEEeCEEecCCCeEEEcccCCCCCceEEEEEeeEEEccccEEeccCCc-----cEeeEEEEeeEEeCCCcEEEEEEec
Confidence            99999999999999999996     6999999999999999999999852     7999999999999999999999999


Q ss_pred             CCCCeEEEEEeC
Q 015319          397 VMIPSGTQCYNS  408 (409)
Q Consensus       397 G~~g~v~~~~~~  408 (409)
                      |++|+|+||+.+
T Consensus       286 g~~G~v~ni~f~  297 (376)
T 1bhe_A          286 SAAGVVNGVRYS  297 (376)
T ss_dssp             TTCCEEEEEEEE
T ss_pred             CCCceEeeEEEE
Confidence            999999999864

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=100.00  E-value=1.9e-49  Score=406.21  Aligned_cols=247  Identities=23%  Similarity=0.426  Sum_probs=219.3

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCC-cccCCCccccceEEEecceEEcCCCCcc
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGP-MSFSGPYCQANIIFQLDGTIIAPTGSKD  184 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~-i~l~g~~~~s~~~l~l~Gtl~~~~~~~~  184 (409)
                      ...+++|++|||++||++|||+|||+||++ |+ ++++|+||+| +|++++ |.|.+   .++++|+++|+++++.+.. 
T Consensus        17 ~~~~~~V~~~GA~~dg~tddT~Aiq~Ai~a-c~-~g~~V~vP~G-~Yli~~~l~l~g---~s~v~l~l~G~~l~~~~~~-   89 (422)
T 1rmg_A           17 ATKTCNILSYGAVADNSTDVGPAITSAWAA-CK-SGGLVYIPSG-NYALNTWVTLTG---GSATAIQLDGIIYRTGTAS-   89 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHHH-HT-BTCEEEECSS-EEEECSCEEEES---CEEEEEEECSEEEECCCCS-
T ss_pred             CCcEEEeeeccccCCCCcccHHHHHHHHHH-CC-CCCEEEECCC-eEEeCCceeecC---CCeEEEEEcCcEEcccCCC-
Confidence            456899999999999999999999999984 55 4889999999 788885 99976   4899999999988865421 


Q ss_pred             cCCCceeeE---EEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCC
Q 015319          185 WGKGLLWWL---DFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIK  261 (409)
Q Consensus       185 ~~~g~~~~i---~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  261 (409)
                           ..|+   ...++++++|+|+|+|||+|..||...                                      ..|
T Consensus        90 -----~~~~~~~~~~~~~~i~i~G~G~IdG~G~~~w~~~--------------------------------------~~r  126 (422)
T 1rmg_A           90 -----GNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEG--------------------------------------TYG  126 (422)
T ss_dssp             -----SEEEEEEEEEEEEEECSSSCCEEECCTHHHHTTT--------------------------------------CCC
T ss_pred             -----CceEEEEecCceeEEeeccCEEEECCcchhhcCC--------------------------------------CCC
Confidence                 2344   446677778899999999999999531                                      128


Q ss_pred             ceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCC
Q 015319          262 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQT  341 (409)
Q Consensus       262 p~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~s  341 (409)
                      |.+|+|.+|+|++|+|++|+|+++|++++..|++|+|+|++|.+ .+..++|||++.+ +||+|+||+|.++||||++++
T Consensus       127 p~~i~~~~~~nv~I~~iti~nsp~~~i~i~~~~nv~I~n~~I~~-~d~~ntDGidi~~-~nV~I~n~~i~~gDD~Iai~s  204 (422)
T 1rmg_A          127 ARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRG-GNEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKS  204 (422)
T ss_dssp             CEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEEEEEEEEEEC-CSSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEE
T ss_pred             ceEEEEcccceEEEECeEEECCCceEEEEeCcCCEEEEeEEEEC-CCCCCCccEeecC-CeEEEEeeEEeCCCCeEEeCC
Confidence            99999999999999999999999999999999999999999999 4557999999999 999999999999999999999


Q ss_pred             CceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          342 GCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       342 g~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      +++||+|+||+|.++|||+|||+|++   +.|+||+|+||+|.++.+||+||+|.| .|+|+||+.+
T Consensus       205 ~~~nI~I~n~~~~~~~GisIGS~g~~---~~v~nV~v~n~~~~~~~~Gi~Ikt~~g-~G~v~nI~~~  267 (422)
T 1rmg_A          205 PANNILVESIYCNWSGGCAMGSLGAD---TDVTDIVYRNVYTWSSNQMYMIKSNGG-SGTVSNVLLE  267 (422)
T ss_dssp             EEEEEEEEEEEEESSSEEEEEEECTT---EEEEEEEEEEEEEESSSCSEEEEEBBC-CEEEEEEEEE
T ss_pred             CCcCEEEEeEEEcCCcceeecccCCC---CcEEEEEEEeEEEeccceEEEEEecCC-CcEEEEEEEE
Confidence            99999999999999999999999743   579999999999999999999999865 6899999864

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=100.00  E-value=4e-48  Score=412.72  Aligned_cols=282  Identities=23%  Similarity=0.374  Sum_probs=227.8

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEec--ceEEcCCCCc
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD--GTIIAPTGSK  183 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~--Gtl~~~~~~~  183 (409)
                      ...+++|++|||+|||++|||+|||+||+ +|.. |++|+||+| +|++++|.|     +++++|+|+  ++|+++.+..
T Consensus       153 ~~~~~~v~~~Ga~~dg~~ddt~aiq~Ai~-~c~~-g~~v~vP~G-~y~~g~i~l-----ks~v~L~l~~gatL~~s~d~~  224 (608)
T 2uvf_A          153 KPQIVNVRDFGAIDDGKTLNTKAIQQAID-SCKP-GCRVEIPAG-TYKSGALWL-----KSDMTLNLQAGAILLGSENPD  224 (608)
T ss_dssp             CCCEEEGGGGTCCSSSSCCCHHHHHHHHH-TCCT-TEEEEECSE-EEEECCEEC-----CSSEEEEECTTEEEEECSCGG
T ss_pred             CCCEEecccccccCCCCccCHHHHHHHHH-hcCC-CCEEEECCC-ceEecceec-----cCceEEEecCCcEEEecCCHH
Confidence            45699999999999999999999999997 4554 899999999 899999998     789999994  7999999988


Q ss_pred             ccCCCc-----------eeeEEEec--------ccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCC
Q 015319          184 DWGKGL-----------LWWLDFTK--------LKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYK  244 (409)
Q Consensus       184 ~~~~g~-----------~~~i~~~~--------~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~  244 (409)
                      +|..+.           ..+|.+.+        ++||+|+|+|+|||+|..||.....    .++...-.|....    .
T Consensus       225 ~y~~~~~~~~~~~~~~~~~lI~~~~~~~~~~g~~~ni~I~G~GtIDG~G~~~~~~~~~----~~~~g~~~p~~~~----~  296 (608)
T 2uvf_A          225 DYPAGYRLYPYSTIERPASLINAIDPNNSKPGTFRNIRITGSGVIDGNGWLRAKTAEI----TDELGRSLPQYVA----S  296 (608)
T ss_dssp             GSCEEECSSTTCCSCEECCSEEECCSSCCCTTSEEEEEEESSCEEECCCBCEEEEEEE----ECTTSCEEEEECC----C
T ss_pred             HCcCcceeeeccccccccceEEeeccccccccceeeEEEEeeEEEcCccccccccccc----ccccccccccccc----c
Confidence            886321           14677776        7999999999999999888743100    0000000000000    0


Q ss_pred             CCCCccc---------------ccc--CCCCCCCceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCC
Q 015319          245 PPTPIRS---------------ELS--GKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPG  307 (409)
Q Consensus       245 ~~~~~~~---------------~~~--~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~  307 (409)
                      ..+....               ...  ......||.+|.|.+|+|++|+|++|+|+++|++++..|++|+|+|++|.. .
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~rP~~i~~~~~~nv~I~giti~ns~~~~i~~~~~~nv~i~~v~i~~-~  375 (608)
T 2uvf_A          297 KNSKVHEDGILAKNQVEKAVSDGMDLKNAYGQRRSSLMTLRGVENVYLAGFTVRNPAFHGIMNLENHNVVANGLIHQT-Y  375 (608)
T ss_dssp             CTTTHHHHBSHHHHHHHHHHHTTCCHHHHHHHSSCCSEEEESEEEEEEESCEEECCSSCSEEEESCEEEEEESCEEEC-T
T ss_pred             ccccccccccccccccccccccccccccccccCCCeEEEEEeeeeEEEeCcEEecCCCCEEEEecCCCEEEeeEEEcC-C
Confidence            0000000               000  000114899999999999999999999999999999999999999999875 4


Q ss_pred             CCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCC----------ceeEEEEEEEEcCCCee-EEEecCCCCCCCcEEEE
Q 015319          308 DSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG----------CSNVYVHNVNCGPGHGI-SIGSLGKDNTKACVSNI  376 (409)
Q Consensus       308 ~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg----------~~nV~I~n~~~~~g~Gi-sIGs~g~~~~~~~v~nI  376 (409)
                      +++|+|||++.+|+||+|+||+|.++||||++++|          ++||+|+||+|.++||+ .|||+    +.+.|+||
T Consensus       376 ~~~NtDGidi~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~~~s~nI~I~n~~~~~ghg~~~iGS~----~~~~v~nI  451 (608)
T 2uvf_A          376 DANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVTGSH----TGAWIEDI  451 (608)
T ss_dssp             TCTTCCSEEEESCEEEEEESCEEECSSCSEEEECCCSGGGGGSCCEEEEEEESCEECSSSCSEEEESC----CTTCEEEE
T ss_pred             CCCCCCeEEecCCceEEEEeeEEecCCceEEecCCcCccccccccccCEEEEeEEEeCCCCeEEEccc----CCCCEEEE
Confidence            56899999999999999999999999999999986          79999999999999985 58996    66789999


Q ss_pred             EEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          377 TVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       377 ~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      +|+||+|.++.+||+||||+|++|.|+||+.+
T Consensus       452 ~v~n~~~~~t~~GirIKt~~g~gG~v~nI~~~  483 (608)
T 2uvf_A          452 LAENNVMYLTDIGLRAKSTSTIGGGARNVTFR  483 (608)
T ss_dssp             EEESCEEESCSEEEEEEEETTTCCEEEEEEEE
T ss_pred             EEEeEEEECCCceEEEeeecCCCceEECcEEE
Confidence            99999999999999999999999999999864

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=100.00  E-value=4e-45  Score=367.26  Aligned_cols=240  Identities=25%  Similarity=0.400  Sum_probs=210.4

Q ss_pred             ceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCC
Q 015319          108 SVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGK  187 (409)
Q Consensus       108 ~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~  187 (409)
                      .+++|++           ++|||+|+++|...++++|+||+|.|+.+.  .|     +++++|+++|++.+.  ...|. 
T Consensus        28 ~~Ctv~~-----------~~aiq~ai~~c~~~~g~~v~vP~G~~l~l~--~l-----~~~~~l~~~g~~~~~--~~~w~-   86 (362)
T 1czf_A           28 DSCTFTT-----------AAAAKAGKAKCSTITLNNIEVPAGTTLDLT--GL-----TSGTKVIFEGTTTFQ--YEEWA-   86 (362)
T ss_dssp             CEEEESS-----------HHHHHHHGGGCSEEEEESCEECTTCCEEEC--SC-----CTTCEEEEESEEEEC--CCCSC-
T ss_pred             CEEEECC-----------HHHHHHHHHHhhccCCCEEEECCCEEEEee--cc-----CCCeEEEEeCcEEec--cccCC-
Confidence            5788877           689999998766567889999999554322  23     679999999998863  35675 


Q ss_pred             CceeeEEEecccCeeeee--ceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeE
Q 015319          188 GLLWWLDFTKLKGITIQG--KGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTAL  265 (409)
Q Consensus       188 g~~~~i~~~~~~nVtI~G--~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i  265 (409)
                        ..||.+. .+||+|+|  .|+|||+|+.||+...                                  .....||.++
T Consensus        87 --g~~i~~~-~~nv~I~G~~~g~IdG~G~~~w~~~~----------------------------------~~~~~rP~~i  129 (362)
T 1czf_A           87 --GPLISMS-GEHITVTGASGHLINCDGARWWDGKG----------------------------------TSGKKKPKFF  129 (362)
T ss_dssp             --CCSEEEE-EESCEEEECTTCEEECCGGGTCCSCT----------------------------------TSSSCCCCCE
T ss_pred             --CcEEEEe-CccEEEEcCCCcEEECCCchhhcccC----------------------------------CCCCCCCeEE
Confidence              3688874 59999999  6999999999997641                                  1123589999


Q ss_pred             EEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCC-C---CCCCCceeecCcccEEEEeeEEeeCCCeEEeCC
Q 015319          266 RFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPG-D---SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQT  341 (409)
Q Consensus       266 ~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~-~---~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~s  341 (409)
                      .|.+|+|++|+|++++|+++|++++. |++|+|+|++|.++. +   ++|+||||+.+|+||+|+||+|.++||||++++
T Consensus       130 ~~~~~~nv~i~~iti~nsp~~~i~i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks  208 (362)
T 1czf_A          130 YAHGLDSSSITGLNIKNTPLMAFSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNS  208 (362)
T ss_dssp             EEEEEETEEEESCEEECCSSCCEEEE-CSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEECSSCSEEESS
T ss_pred             EEeecccEEEEEEEEecCCccEEEEe-eCCEEEEEEEEECCccccccCCCCCceeecCcceEEEEeeEEecCCCEEEEeC
Confidence            99999999999999999999999999 999999999999963 3   789999999999999999999999999999999


Q ss_pred             CceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          342 GCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       342 g~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      + +||+|+||+|.++|||+|||+|.+ +.+.|+||+|+||+|.++.+|+|||+|+|+.|.|+||+.+
T Consensus       209 g-~nI~i~n~~~~~ghGisiGS~G~~-~~~~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nI~~~  273 (362)
T 1czf_A          209 G-ENIWFTGGTCIGGHGLSIGSVGDR-SNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYS  273 (362)
T ss_dssp             E-EEEEEESCEEESSCCEEEEEECSS-SCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEE
T ss_pred             C-eEEEEEEEEEeCCceeEEeecccc-CCCCEEEEEEEeeEEECCceEEEEEEeCCCCceEeeEEEE
Confidence            6 999999999999999999999876 6788999999999999999999999999999999999864

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=100.00  E-value=8.3e-45  Score=362.23  Aligned_cols=237  Identities=26%  Similarity=0.404  Sum_probs=207.7

Q ss_pred             ccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEecccCeee
Q 015319          124 DDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITI  203 (409)
Q Consensus       124 DdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI  203 (409)
                      .||+|||+||++|...++++|+||+|+|+.+.  .|     +++++|+++|++.+.  +..|.   ..||.+.. +||+|
T Consensus         6 ~dt~aiq~ai~~c~~~~g~~v~vP~G~~~~l~--~l-----~~~~~l~~~g~~~~~--~~~w~---g~~i~~~~-~nv~I   72 (339)
T 2iq7_A            6 TDAAAAIKGKASCTSIILNGIVVPAGTTLDMT--GL-----KSGTTVTFQGKTTFG--YKEWE---GPLISFSG-TNINI   72 (339)
T ss_dssp             SCHHHHHHHGGGCSEEEEESCEECTTCCEEEC--SC-----CTTCEEEEESEEEEC--CCCSC---CCSEEEEE-ESCEE
T ss_pred             CCHHHHHHHHHHhhccCCCeEEECCCEEEEee--cc-----CCCeEEEEeCcEEcc--ccccc---CcEEEEEc-ccEEE
Confidence            47999999998766666889999999544322  33     679999999988863  45665   35787765 99999


Q ss_pred             eec--eEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEe
Q 015319          204 QGK--GIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQ  281 (409)
Q Consensus       204 ~G~--G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~  281 (409)
                      +|.  |+|||+|+.||+...                                 ......||.+|.|.+|+|++|++++++
T Consensus        73 ~G~~gG~IdG~G~~~w~~~~---------------------------------~~~~~~rp~~i~~~~~~nv~i~giti~  119 (339)
T 2iq7_A           73 NGASGHSIDCQGSRWWDSKG---------------------------------SNGGKTKPKFFYAHSLKSSNIKGLNVL  119 (339)
T ss_dssp             EECTTCEEECCGGGTCCSCG---------------------------------GGSSSCCCCCEEEEEEEEEEEECCEEE
T ss_pred             EcCCCCEEECCccccccccc---------------------------------ccCCCCCCeEEEEeeeCcEEEEEEEEE
Confidence            997  799999999997531                                 011235899999999999999999999


Q ss_pred             cCCCCeEEeecCccEEEEeEEEeCCCC----CCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCC
Q 015319          282 NSPQCHLKFDNCIGVVVHDVSVSSPGD----SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGH  357 (409)
Q Consensus       282 ns~~~~i~~~~~~nV~I~n~~I~s~~~----~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~  357 (409)
                      |+++|++++..|++|+|++++|.++.+    ++|+|||++.+|+||+|+||+|.++||||+++++ +||+|+||+|.++|
T Consensus       120 nsp~~~i~i~~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~gDDciaiksg-~nI~i~n~~~~~gh  198 (339)
T 2iq7_A          120 NTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSG-TNITFTGGTCSGGH  198 (339)
T ss_dssp             CCSSCCEEEESCEEEEEESCEEECGGGGGTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESSE-EEEEEESCEEESSC
T ss_pred             eCCcceEEEeccCCEEEEEEEEECCccccccCCCCCcEEEcCcceEEEEecEEecCCCEEEEcCC-ccEEEEeEEEECCc
Confidence            999999999999999999999998742    7899999999999999999999999999999996 99999999999999


Q ss_pred             eeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          358 GISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       358 GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      ||+|||+|.+ +.+.|+||+|+||+|.++.+|+|||+|+|+.|+|+||+.+
T Consensus       199 GisiGSlg~~-~~~~v~nV~v~n~~~~~~~~girIkt~~g~~G~v~nI~~~  248 (339)
T 2iq7_A          199 GLSIGSVGGR-SDNTVKTVTISNSKIVNSDNGVRIKTVSGATGSVSGVTYS  248 (339)
T ss_dssp             CEEEEEESSS-SCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEE
T ss_pred             eEEECcCCcc-cCCCEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEE
Confidence            9999999877 6688999999999999999999999999999999999864

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=100.00  E-value=1.1e-44  Score=360.79  Aligned_cols=236  Identities=27%  Similarity=0.427  Sum_probs=206.4

Q ss_pred             ccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEecccCeee
Q 015319          124 DDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITI  203 (409)
Q Consensus       124 DdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI  203 (409)
                      .||+|||+|+++|...++++|+||+|.|+.+.  .|     +++++|+++|++.+.  +..|.   ..||.+. .+||+|
T Consensus         6 ~~t~aiq~ai~~c~~~gg~~v~vP~G~~~~l~--~l-----~~~~~l~~~g~~~~~--~~~w~---g~li~~~-~~nv~I   72 (336)
T 1nhc_A            6 TSASEASESISSCSDVVLSSIEVPAGETLDLS--DA-----ADGSTITFEGTTSFG--YKEWK---GPLIRFG-GKDLTV   72 (336)
T ss_dssp             SSHHHHHHHGGGCSEEEEESCEECTTCCEECT--TC-----CTTCEEEEESEEEEC--CCCSC---CCSEECC-EESCEE
T ss_pred             CCHHHHHHHHHHhhccCCCeEEECCCEEEEee--cc-----CCCeEEEEeceEEcc--ccccc---CcEEEEe-cCCEEE
Confidence            58999999998766667789999999544321  33     679999999998863  35565   3577775 499999


Q ss_pred             eec--eEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEe
Q 015319          204 QGK--GIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQ  281 (409)
Q Consensus       204 ~G~--G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~  281 (409)
                      +|.  |+|||+|+.||+...                                 ......||++|.|.+|+|++|++++|+
T Consensus        73 ~G~~gG~IdG~G~~~w~~~~---------------------------------~~~~~~rp~~i~~~~~~nv~i~~i~i~  119 (336)
T 1nhc_A           73 TMADGAVIDGDGSRWWDSKG---------------------------------TNGGKTKPKFMYIHDVEDSTFKGINIK  119 (336)
T ss_dssp             EECTTCEEECCGGGTCCSCT---------------------------------TTSSSCCCCCEEEEEEEEEEEESCEEE
T ss_pred             EcCCCeEEECCccccccccC---------------------------------cCCCCCCceEEEEeeeCcEEEEEEEEE
Confidence            997  799999999997631                                 011235899999999999999999999


Q ss_pred             cCCCCeEEeecCccEEEEeEEEeCCCC----CCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCC
Q 015319          282 NSPQCHLKFDNCIGVVVHDVSVSSPGD----SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGH  357 (409)
Q Consensus       282 ns~~~~i~~~~~~nV~I~n~~I~s~~~----~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~  357 (409)
                      |+++|++++. |++|+|++++|.++..    ++|+|||++.+|+||+|+||+|.++||||+++++ +||+|+||+|.++|
T Consensus       120 nsp~~~i~i~-~~nv~i~~~~I~~~~~d~~~~~ntDGidi~~s~nV~I~n~~i~~gDDciaiksg-~nI~i~n~~~~~gh  197 (336)
T 1nhc_A          120 NTPVQAISVQ-ATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCSGGH  197 (336)
T ss_dssp             CCSSCCEEEE-EEEEEEESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEESSSEEEEESSE-EEEEEESCEEESSS
T ss_pred             eCCccEEEEE-eCCEEEEEEEEECCCcccccCCCCCcEEecCCCeEEEEeCEEEcCCCEEEEeCC-eEEEEEeEEEECCc
Confidence            9999999999 9999999999999743    7899999999999999999999999999999996 99999999999999


Q ss_pred             eeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          358 GISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       358 GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      ||+|||+|.+ ..+.|+||+|+||+|.++.+|+|||+|+|+.|+|+||+.+
T Consensus       198 GisiGS~g~~-~~~~v~nV~v~n~~~~~t~~girIkt~~g~~G~v~nI~~~  247 (336)
T 1nhc_A          198 GLSIGSVGGR-DDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYS  247 (336)
T ss_dssp             EEEEEEESSS-SCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEE
T ss_pred             CceEccCccc-cCCCEEEEEEEeeEEECCCcEEEEEEECCCCCEEeeeEEe
Confidence            9999999876 6688999999999999999999999999999999999864

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=100.00  E-value=4e-44  Score=358.53  Aligned_cols=238  Identities=23%  Similarity=0.372  Sum_probs=205.6

Q ss_pred             cHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEecccCeeee
Q 015319          125 DTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQ  204 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI~  204 (409)
                      ||+|||+|+++|...++++|+||+|+|+.+.  .|     +++++|+++|++.+.  ...|..  ..||.+.. +||+|+
T Consensus         7 ~t~aiq~ai~~c~~~gg~~v~vP~G~~l~l~--~l-----~~~~~l~~~g~~~~~--~~~w~~--g~~i~~~~-~ni~I~   74 (349)
T 1hg8_A            7 EYSGLATAVSSCKNIVLNGFQVPTGKQLDLS--SL-----QNDSTVTFKGTTTFA--TTADND--FNPIVISG-SNITIT   74 (349)
T ss_dssp             SGGGHHHHHHHCSEEEECCCEECTTCCEEET--TC-----CTTCEEEECSEEEEC--CCCCTT--CCSEEEEE-ESCEEE
T ss_pred             CHHHHHHHHHhccccCCCEEEECCCEEEEee--cc-----CCCeEEEEcCceecc--cccccC--CceEEEEC-ccEEEE
Confidence            7999999998776667889999999544322  22     679999999998763  356732  36788854 999999


Q ss_pred             e--ceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEE-E-eeeeEEEeceEE
Q 015319          205 G--KGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRF-Y-GSFNVTVTGITI  280 (409)
Q Consensus       205 G--~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~-~-~~~nv~I~gvti  280 (409)
                      |  .|+|||+|+.||+....                                ......||++|.| . .|+|++|+|++|
T Consensus        75 G~~~G~IdG~G~~ww~~~~~--------------------------------~~~~~~rP~~i~~~~~~~~nv~I~giti  122 (349)
T 1hg8_A           75 GASGHVIDGNGQAYWDGKGS--------------------------------NSNSNQKPDHFIVVQKTTGNSKITNLNI  122 (349)
T ss_dssp             ECTTCEEECCGGGTCCSCTT--------------------------------CTTSCCCCSEEEEEEEEESSEEEESCEE
T ss_pred             ecCCCEEcCCcchhhhcccc--------------------------------cCCCCCCCeEEEEeecCcCcEEEEEEEE
Confidence            9  69999999999976310                                0011258999999 7 788999999999


Q ss_pred             ecCCCCeEEeecCccEEEEeEEEeCCC-C-----------CCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEE
Q 015319          281 QNSPQCHLKFDNCIGVVVHDVSVSSPG-D-----------SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYV  348 (409)
Q Consensus       281 ~ns~~~~i~~~~~~nV~I~n~~I~s~~-~-----------~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I  348 (409)
                      +|+++|++++..|++|+|++++|.++. +           ++|+|||++.+|+||+|+||+|.++||||+++++ +||+|
T Consensus       123 ~nsp~~~i~i~~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~~s~nV~I~n~~i~~gDDcIaiksg-~nI~i  201 (349)
T 1hg8_A          123 QNWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVV  201 (349)
T ss_dssp             ECCSSEEEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEECSSCSEEESSE-EEEEE
T ss_pred             EcCCCceEEEeccCCEEEEEEEEECCCCccccccccccccCCCCCeEEEccccEEEEEeeEEecCCCeEEeeCC-eEEEE
Confidence            999999999999999999999999852 2           5899999999999999999999999999999995 99999


Q ss_pred             EEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          349 HNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       349 ~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      +||+|.++|||+|||+|.+ +.+.|+||+|+||+|.++.+|+|||+|+|+.|.|+||+.+
T Consensus       202 ~n~~~~~ghGisiGS~G~~-~~~~v~nV~v~n~~~~~~~~GirIKt~~g~~G~v~nI~~~  260 (349)
T 1hg8_A          202 SNMYCSGGHGLSIGSVGGK-SDNVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQ  260 (349)
T ss_dssp             EEEEEESSCCEEEEEESSS-SCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEE
T ss_pred             EeEEEeCCcceEEcccccc-ccCCEEEEEEEEEEEECCCcEEEEEecCCCCccccceEEE
Confidence            9999999999999999877 6788999999999999999999999999999999999864

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=100.00  E-value=3.1e-44  Score=358.04  Aligned_cols=236  Identities=26%  Similarity=0.402  Sum_probs=206.4

Q ss_pred             cHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEecccCeeee
Q 015319          125 DTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQ  204 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI~  204 (409)
                      -++|||+|+++|...++++|+||+|.|+.+.  .|     +++++|+++|++.+.  +..|.   ..||.+.. +||+|+
T Consensus        11 g~~aiq~ai~~c~~~gg~~v~vP~G~~l~l~--~l-----~~~~~l~~~g~~~~~--~~~w~---g~li~~~~-~nv~I~   77 (339)
T 1ia5_A           11 GASSASKSKTSCSTIVLSNVAVPSGTTLDLT--KL-----NDGTHVIFSGETTFG--YKEWS---GPLISVSG-SDLTIT   77 (339)
T ss_dssp             HHHHHHHHGGGCSEEEEESCEECTTCCEEEC--SC-----CTTCEEEEESEEEEC--CCCSC---CCSEEEEE-ESCEEE
T ss_pred             chHHHHHHHHHhhccCCCeEEECCCEEEEee--cc-----CCCeEEEEeCcEEcc--ccccc---CcEEEEEc-CcEEEE
Confidence            3679999998776667889999999544322  33     689999999998863  45665   36787765 999999


Q ss_pred             ec--eEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEec
Q 015319          205 GK--GIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQN  282 (409)
Q Consensus       205 G~--G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~n  282 (409)
                      |.  |+|||+|+.||+...                                 ......||.+|.|.+|+|++|++++|+|
T Consensus        78 G~~gG~IdG~G~~~w~~~~---------------------------------~~~~~~rp~~i~~~~~~nv~i~~i~i~n  124 (339)
T 1ia5_A           78 GASGHSINGDGSRWWDGEG---------------------------------GNGGKTKPKFFAAHSLTNSVISGLKIVN  124 (339)
T ss_dssp             ECTTCEEECCGGGTCSSCT---------------------------------TTSSSCCCCCEEEEEEEEEEEESCEEEC
T ss_pred             cCCCeEEeCCCCccccccc---------------------------------cCCCCCCCeEEEEeecCcEEEEEEEEEc
Confidence            97  799999999997641                                 0112358999999999999999999999


Q ss_pred             CCCCeEEeecCccEEEEeEEEeCCC-C---CCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCe
Q 015319          283 SPQCHLKFDNCIGVVVHDVSVSSPG-D---SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHG  358 (409)
Q Consensus       283 s~~~~i~~~~~~nV~I~n~~I~s~~-~---~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~G  358 (409)
                      +++|++++..|++|+|++++|.++. +   ++|+|||++.+|+||+|+||+|.++||||+++++ +||+|+||+|.++||
T Consensus       125 sp~~~i~i~~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~gDDcIaiksg-~nI~i~n~~~~~ghG  203 (339)
T 1ia5_A          125 SPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHG  203 (339)
T ss_dssp             CSSCCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESSE-EEEEEESCEEESSSC
T ss_pred             CCcceEEEecccCeEEeeEEEECCccccccCCCCCcEEecCCceEEEEeeEEEcCCCeEEEeCC-eEEEEEeEEEECCce
Confidence            9999999999999999999999873 3   6899999999999999999999999999999996 999999999999999


Q ss_pred             eEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          359 ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       359 isIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      |+|||+|.+ +.+.|+||+|+||+|.++.+|++||+|+|+.|+|+||+.+
T Consensus       204 isiGS~g~~-~~~~v~nV~v~n~~~~~t~~girIKt~~g~~G~v~nI~~~  252 (339)
T 1ia5_A          204 LSIGSVGGR-SDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYK  252 (339)
T ss_dssp             EEEEEECSS-SCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEE
T ss_pred             EEECcCCcc-cCCCEEEEEEEeeEEECCCcEEEEEEeCCCCcEEEeeEEE
Confidence            999999876 6688999999999999999999999999999999999864

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=100.00  E-value=8e-45  Score=361.57  Aligned_cols=229  Identities=24%  Similarity=0.379  Sum_probs=201.4

Q ss_pred             HHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEecccCeeeee
Q 015319          126 TKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQG  205 (409)
Q Consensus       126 T~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI~G  205 (409)
                      ++|||+ +++|...++++|+||+|.||.   |.|     +++++|+++|++.+.  ...|..   +||.+. .+||+|+|
T Consensus         8 ~~aiq~-i~aC~~~gg~~v~vP~G~~l~---l~l-----~~~~~l~~~g~~~~~--~~~w~~---~~i~~~-~~ni~I~G   72 (335)
T 1k5c_A            8 VDDAKD-IAGCSAVTLNGFTVPAGNTLV---LNP-----DKGATVTMAGDITFA--KTTLDG---PLFTID-GTGINFVG   72 (335)
T ss_dssp             TTGGGG-CTTCSEEEECCEEECTTCCEE---ECC-----CTTCEEEECSCEEEC--CCCSCS---CSEEEE-EEEEEEEC
T ss_pred             HHHhHH-HHhcccCCCCEEEECCCEEEE---EEe-----CCCeEEEEeccEecc--cccccC---cEEEEE-ccCEEEEe
Confidence            689999 876555678899999995442   343     789999999999873  356753   688886 59999999


Q ss_pred             -ceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCC
Q 015319          206 -KGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP  284 (409)
Q Consensus       206 -~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~  284 (409)
                       .|+|||+|+.||+...                                 ......||++|.|..|+ ++|+|++++|++
T Consensus        73 ~~G~idG~G~~ww~~~~---------------------------------~~~~~~rP~~i~~~~~~-v~i~giti~nsp  118 (335)
T 1k5c_A           73 ADHIFDGNGALYWDGKG---------------------------------TNNGTHKPHPFLKIKGS-GTYKKFEVLNSP  118 (335)
T ss_dssp             TTCEEECCGGGTCCSCT---------------------------------TTSSSCCCCCSEEEEEE-EEEESCEEESCS
T ss_pred             CccEEcCChhHhhhccc---------------------------------ccCCCCCCeEEEEeceE-EEEEEEEEECCC
Confidence             5999999999997631                                 01123589999999999 999999999999


Q ss_pred             CCeEEeecCcc-EEEEeEEEeCCC-C----CCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCe
Q 015319          285 QCHLKFDNCIG-VVVHDVSVSSPG-D----SPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHG  358 (409)
Q Consensus       285 ~~~i~~~~~~n-V~I~n~~I~s~~-~----~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~G  358 (409)
                      +|++++..|++ |+|+|++|.++. +    ++|+||||+ +|+||+|+||+|.++||||+++++ +||+|+||+|.++||
T Consensus       119 ~~~i~i~~~~n~v~i~~v~I~~~~~d~~~~~~NtDGidi-~s~nV~I~n~~i~~gDDcIaiksg-~nI~i~n~~~~~ghG  196 (335)
T 1k5c_A          119 AQAISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDCIAINDG-NNIRFENNQCSGGHG  196 (335)
T ss_dssp             SCCEEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEESSSCSEEEEEE-EEEEEESCEEESSCC
T ss_pred             cceEEEEccCCeEEEEEEEEECCCCcccccCCCCCeEcc-cCCeEEEEeeEEEcCCCEEEeeCC-eeEEEEEEEEECCcc
Confidence            99999999999 999999999974 3    789999999 999999999999999999999997 999999999999999


Q ss_pred             eEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCC-CeEEEEEeC
Q 015319          359 ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMI-PSGTQCYNS  408 (409)
Q Consensus       359 isIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~-g~v~~~~~~  408 (409)
                      |+|||+++   .+.|+||+|+||+|.++.+|+|||||+|++ |.|+||+.+
T Consensus       197 isIGS~g~---~~~v~nV~v~n~~~~~t~~girIKt~~g~~~G~v~nI~f~  244 (335)
T 1k5c_A          197 ISIGSIAT---GKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYD  244 (335)
T ss_dssp             EEEEEECT---TCEEEEEEEESCEEEEEEEEEEEEEETTCCSCEEEEEEEE
T ss_pred             CeEeeccC---CCCEEEEEEEeeEEECCCceEEEEEeCCCCcceEeeeEEE
Confidence            99999964   578999999999999999999999999999 999999864

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=100.00  E-value=2.1e-42  Score=360.66  Aligned_cols=228  Identities=18%  Similarity=0.132  Sum_probs=185.9

Q ss_pred             CceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEe------------CCcccCCCccccceEEEecc
Q 015319          107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLV------------GPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       107 ~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~------------~~i~l~g~~~~s~~~l~l~G  174 (409)
                      ..++||+||||++|    ||+|||+||++|++.++++|+||+|.+|++            ++|.|     +++++|+|+|
T Consensus        49 ~~~~nV~dfGA~gD----dT~AIqkAIdaCs~~GGgtV~VPaG~tYLt~sv~~gp~~~~sGpI~L-----kSnVtL~LdG  119 (600)
T 2x6w_A           49 DPSGNVIQPGPNVD----SRQYLQAAIDYVSSNGGGTITIPAGYTWYLGSYGVGGIAGHSGIIQL-----RSNVNLNIEG  119 (600)
T ss_dssp             CTTSCBCCCCTTCC----CHHHHHHHHHHHHHTTCEEEEECTTCEEEECSCCCGGGGGGTEEEEC-----CTTEEEEECS
T ss_pred             CcEEeeecCCCCcc----CHHHHHHHHHHhhhcCCCEEEECCCCEEEecccccccccccccceEE-----cCceEEeeec
Confidence            35799999999999    999999999987778899999999977888            78887     7999999999


Q ss_pred             eEEcCCCCcccCCC---ceee---EEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCC
Q 015319          175 TIIAPTGSKDWGKG---LLWW---LDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTP  248 (409)
Q Consensus       175 tl~~~~~~~~~~~g---~~~~---i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  248 (409)
                      +|+++.+..+|+..   ...|   |.+.+++||+|+|+|+|||+|..||...                            
T Consensus       120 tL~as~d~~~yp~~~~v~~~w~slI~~~~~~NItItG~GtIDGqG~~wW~~~----------------------------  171 (600)
T 2x6w_A          120 RIHLSPFFDLKPFQVFVGFDNGDPASSGNLENCHIYGHGVVDFGGYEFGASS----------------------------  171 (600)
T ss_dssp             EEEECGGGTTSCEEEEECCSSSSGGGCCCEEEEEEESSCEEECTTCCCSSTT----------------------------
T ss_pred             EEEEcCChHHCcccccccccccceEEEecceeEEEecceeeeCCcccccccc----------------------------
Confidence            99999999888641   1334   8889999999999999999999999531                            


Q ss_pred             ccccccCCCCCCCceeEEEEeeeeEEEeceEEecC-CCCeEEe---ecCccEEEEeEE----EeCCCCCCCCCceeecCc
Q 015319          249 IRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNS-PQCHLKF---DNCIGVVVHDVS----VSSPGDSPNTDGIHLQNS  320 (409)
Q Consensus       249 ~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns-~~~~i~~---~~~~nV~I~n~~----I~s~~~~~n~DGI~l~~s  320 (409)
                             ..+..||. +.|.+|+   |+|++++|+ ++|++++   ..|+||+|+|++    |.+   ++|+|||     
T Consensus       172 -------~~~~~RP~-l~f~~c~---I~GITi~NSDP~w~I~iG~~~~c~NVtI~nvtfi~aI~s---spNTDGI-----  232 (600)
T 2x6w_A          172 -------QLRNGVAF-GRSYNCS---VTGITFQNGDVTWAITLGWNGYGSNCYVRKCRFINLVNS---SVNADHS-----  232 (600)
T ss_dssp             -------CCEEEEEC-CSEEEEE---EESCEEESCCCSCSEEECBTTBEEEEEEESCEEECCCCC---SSCCCEE-----
T ss_pred             -------ccCCCCCE-EEEeeeE---EeCeEEECCCCccEEEeCCCCCcccEEEeCeEEcceEec---CCCCCEE-----
Confidence                   00113677 7888888   999999999 9999999   999999999999    776   6899999     


Q ss_pred             ccEEEEeeEEeeCCCeEEe-CCCce-eEEEEEEEEcCCC-eeEEEecCCC---------------CCCCcEEEEEEEeEE
Q 015319          321 KDVLIHTSNLACGDDCVSI-QTGCS-NVYVHNVNCGPGH-GISIGSLGKD---------------NTKACVSNITVRDVM  382 (409)
Q Consensus       321 ~nV~I~n~~i~~gDD~Iai-~sg~~-nV~I~n~~~~~g~-GisIGs~g~~---------------~~~~~v~nI~v~n~~  382 (409)
                        |+|+||+|.++||||+| +++.+ ++.++  +|.++| ||+|||+...               +.++.|+||+|+|++
T Consensus       233 --V~I~nc~I~tGDDCIAI~KSGs~~ni~~e--~~~~GHgGISIGSe~~ggV~NV~V~NrIKt~~G~GG~V~NItfeNI~  308 (600)
T 2x6w_A          233 --TVYVNCPYSGVESCYFSMSSSFARNIACS--VQLHQHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNI  308 (600)
T ss_dssp             --EEEECSSSEEEESCEEECCCTTHHHHEEE--EEECSSSEEEESCEEEEESEEEEEEECGGGCTTTCSEEEEEEEESCE
T ss_pred             --EEEEeeEEecCCcEEEEecCCCcCCeEEE--EEcCCCCcEEecccccCcEEEEEEEEEEEeecCCCceEEEEEEEEEE
Confidence              99999999999999999 99964 47777  677777 8999996310               123445555555555


Q ss_pred             EecccceEEEEe
Q 015319          383 MHNTMNGVRIKT  394 (409)
Q Consensus       383 ~~~~~~Gi~Ikt  394 (409)
                      |.+...+|.|..
T Consensus       309 m~nV~~~I~i~q  320 (600)
T 2x6w_A          309 AVIYGQFVILGS  320 (600)
T ss_dssp             EEESSEEEEEEE
T ss_pred             EEccceEEEeCC
Confidence            555554444443

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=100.00  E-value=4.3e-38  Score=329.64  Aligned_cols=230  Identities=18%  Similarity=0.198  Sum_probs=187.1

Q ss_pred             CceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEe-CCcccCCCccccceEEEecc----eEEcCCC
Q 015319          107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLV-GPMSFSGPYCQANIIFQLDG----TIIAPTG  181 (409)
Q Consensus       107 ~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~-~~i~l~g~~~~s~~~l~l~G----tl~~~~~  181 (409)
                      +++++|+||||+|||++|||+|||+||++     |++|+||+| +|++ ++|.|     +++++|++++    +|+++++
T Consensus        20 ~~~~nV~dfGA~gDG~tDdT~Aiq~Ai~~-----Gg~V~iP~G-tYlis~~l~l-----~snv~L~g~g~~~t~L~~~~~   88 (609)
T 3gq8_A           20 QFGVSVKTYGAKGDGVTDDIRAFEKAIES-----GFPVYVPYG-TFMVSRGIKL-----PSNTVLTGAGKRNAVIRFMDS   88 (609)
T ss_dssp             SSSEEGGGGTCCCEEEEECHHHHHHHHHT-----SSCEEECSE-EEEESSCEEE-----CSSEEEEESCTTTEEEEECTT
T ss_pred             CcEEEeEecccCCCCCchhHHHHHHHHHc-----CCEEEECCc-cEEEeCceEE-----CCCcEEEEeeCCCCEEEeCCC
Confidence            35799999999999999999999999985     389999999 7888 99999     6899999985    6777766


Q ss_pred             CcccCCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCC
Q 015319          182 SKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIK  261 (409)
Q Consensus       182 ~~~~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  261 (409)
                      ...|......|+.+.+++||+|+|. +|||+|+.||....                                  .....|
T Consensus        89 ~p~~~~li~~lI~a~~~~NItItG~-TIDGNG~~~g~~~~----------------------------------~~g~~R  133 (609)
T 3gq8_A           89 VGRGESLMYNENVTTGNENIFLSSF-TLDGNNKRLGQGIS----------------------------------GIGGSR  133 (609)
T ss_dssp             CCSSCCSEEESCTTTCCEEEEEEEE-EEECCGGGGCSSCC----------------------------------CSSTTT
T ss_pred             CCCCCceeeeeeeecccccEEEEee-EEECCccccCcccc----------------------------------cCCCCC
Confidence            5544333345667889999999996 99999984432110                                  012258


Q ss_pred             ceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecC------cccEEEEeeEE-eeCC
Q 015319          262 PTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN------SKDVLIHTSNL-ACGD  334 (409)
Q Consensus       262 p~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~------s~nV~I~n~~i-~~gD  334 (409)
                      |.+|.|..|+|++|++++++|++.+++.+..+.+               | ||+++++      |+||+|+||+| .++|
T Consensus       134 P~lI~f~~c~NV~I~gVti~NSp~~gI~I~~~~~---------------N-DGid~DGi~fd~~S~NV~I~Nc~I~~tGD  197 (609)
T 3gq8_A          134 ESNLSIRACHNVYIRDIEAVDCTLHGIDITCGGL---------------D-YPYLGDGTTAPNPSENIWIENCEATGFGD  197 (609)
T ss_dssp             TCSEEEESCEEEEEEEEEEESCSSCSEEEECSSS---------------S-CCCCCTTCCCSSCCEEEEEESCEEESCSS
T ss_pred             ccEEEEEeeceEEEEeeEEEeCCCCCeEEeCCCC---------------C-ccccCCCccccccceeEEEEeeEEEecCC
Confidence            9999999999999999999999986554433332               2 6666666      99999999999 6799


Q ss_pred             CeEEeCCCceeEEEEEEEEcC------CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          335 DCVSIQTGCSNVYVHNVNCGP------GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       335 D~Iai~sg~~nV~I~n~~~~~------g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      |||++++ ++||+|+||+|.+      ++||+||+.        .+||+|+||+|.++.+||+||++.+ .+.++||++.
T Consensus       198 DcIaIks-seNI~I~Nc~~~gp~G~S~~~GIsIGsg--------s~NVtV~Nc~i~nt~~GIrIKt~~~-~~~v~NV~I~  267 (609)
T 3gq8_A          198 DGITTHH-SQYINILNCYSHDPRLTANCNGFEIDDG--------SRHVVLSNNRSKGCYGGIEIKAHGD-APAAYNISIN  267 (609)
T ss_dssp             CSEEECS-CEEEEEESCEEECCSSCSSCCSEEECTT--------CEEEEEESEEEESSSEEEEEEECTT-SCCCEEEEEE
T ss_pred             CEEEecC-CeeEEEEeEEEECCCCCCCcccEEccCC--------cccEEEEeeEEECCCCEEEEEecCC-CCccccEEEE
Confidence            9999987 8999999999943      478999853        3999999999999999999999874 5788988763

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=100.00  E-value=1.2e-33  Score=291.12  Aligned_cols=219  Identities=17%  Similarity=0.259  Sum_probs=176.2

Q ss_pred             CceEE-EeeccccCCCCCccHHHHHHHHHHHhhc-CCcEEEECCceEEEeCCcccCCCccccceEEEec--ceEEcCCC-
Q 015319          107 SSVFN-VKDFGAKGNGVSDDTKAFEAAWAAACKV-EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD--GTIIAPTG-  181 (409)
Q Consensus       107 ~~~~~-V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~-gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~--Gtl~~~~~-  181 (409)
                      ..+|+ |++|||+|||++|||+|||+||++|++. ++++|+||+| +|++++|.|     +++++|+|+  ++|+++.+ 
T Consensus        19 ~~~~~~V~dfGA~gDG~tDdT~Aiq~Aidac~~~~ggg~V~vP~G-tYl~g~I~l-----ks~v~L~l~~GatL~~s~~t   92 (464)
T 1h80_A           19 DVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNG-TYHFLGIQM-----KSNVHIRVESDVIIKPTWNG   92 (464)
T ss_dssp             SEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHHTSTTCEEEEECSS-EEEECSEEC-----CTTEEEEECTTCEEEECCCT
T ss_pred             cceeeehhccCcCCCCCchhHHHHHHHHHHHhhccCCcEEEECCC-eEEEeeEec-----cCceEEEEcCCcEEEeccCC
Confidence            46889 9999999999999999999999887776 7899999999 899999998     789999998  47888764 


Q ss_pred             -CcccCCCceeeEEE---ecccCeeeeece---EEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCcccccc
Q 015319          182 -SKDWGKGLLWWLDF---TKLKGITIQGKG---IIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELS  254 (409)
Q Consensus       182 -~~~~~~g~~~~i~~---~~~~nVtI~G~G---~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (409)
                       ...|     .++.+   .+++||+|+|.|   +|||+|..                                       
T Consensus        93 d~~~y-----~~~~~~~~~~~~nItI~G~Gg~~~iDG~G~~---------------------------------------  128 (464)
T 1h80_A           93 DGKNH-----RLFEVGVNNIVRNFSFQGLGNGFLVDFKDSR---------------------------------------  128 (464)
T ss_dssp             TCSCE-----EEEEESSSSCEEEEEEEECTTCEEEECTTCS---------------------------------------
T ss_pred             CcccC-----CceEeecccCccceEEECcCcceEEeCCCCC---------------------------------------
Confidence             3332     34443   789999999998   88887731                                       


Q ss_pred             CCCCCCCceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCC
Q 015319          255 GKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGD  334 (409)
Q Consensus       255 ~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gD  334 (409)
                          ..+|++|.|.+|+|++|++++|+|  .|.++  .|.+|.+           .|+|||++ .|+||+|+||+|.++|
T Consensus       129 ----~~rp~~i~~~~~~Nv~I~gIti~n--~w~ih--~s~~V~i-----------~NtDGi~i-~s~nV~I~n~~I~~gd  188 (464)
T 1h80_A          129 ----DKNLAVFKLGDVRNYKISNFTIDD--NKTIF--ASILVDV-----------TERNGRLH-WSRNGIIERIKQNNAL  188 (464)
T ss_dssp             ----CCBEEEEEECSEEEEEEEEEEEEC--CSCBS--CSEEECE-----------EEETTEEE-EEEEEEEEEEEEESCC
T ss_pred             ----CCCceEEEEEeeccEEEeeeEEec--cceEe--eceeeee-----------ecCCCcee-eccCEEEeceEEecCC
Confidence                127889999999999999999999  45543  4433322           16899988 7899999999999998


Q ss_pred             CeEE--eCCCceeEEEEEEEEcCCCeeEEEecC----CCCCCCcEEEEEEEeEEEecccceEEEEeec
Q 015319          335 DCVS--IQTGCSNVYVHNVNCGPGHGISIGSLG----KDNTKACVSNITVRDVMMHNTMNGVRIKTWQ  396 (409)
Q Consensus       335 D~Ia--i~sg~~nV~I~n~~~~~g~GisIGs~g----~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~  396 (409)
                      ||+.  ...+++||+|+||+|.+++||+|.+-+    .. ..+.++||+|+||+|.+..++|+|+++.
T Consensus       189 dgiGs~~~~~~~NV~V~n~~~~gg~GIrIktg~d~IG~~-~~g~v~NI~~~Ni~~~nv~~~I~I~p~~  255 (464)
T 1h80_A          189 FGYGLIQTYGADNILFRNLHSEGGIALRMETDNLLMKNY-KQGGIRNIFADNIRCSKGLAAVMFGPHF  255 (464)
T ss_dssp             TTCEEEEESEEEEEEEEEEEEESSEEEEEECCCHHHHHH-TCCEEEEEEEEEEEEESSSEEEEEECTT
T ss_pred             CeEEecccCCEeEEEEEeeEEECCCEEEEEeCCceeccC-CCCcEEEEEEEeEEEECCceeEEEeCCC
Confidence            8774  234589999999999998888886530    11 3567999999999999999999999654

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=100.00  E-value=4.2e-34  Score=300.62  Aligned_cols=236  Identities=16%  Similarity=0.225  Sum_probs=188.1

Q ss_pred             eeccccCCCCCccHHHHHHHHHHHhh--------------------------cCCcEEEECCceEEEe---CCcccCCCc
Q 015319          113 KDFGAKGNGVSDDTKAFEAAWAAACK--------------------------VEASIMVVPAESVFLV---GPMSFSGPY  163 (409)
Q Consensus       113 ~d~GA~gdg~tDdT~Aiq~Ai~~a~~--------------------------~gg~~v~vP~G~~y~~---~~i~l~g~~  163 (409)
                      ..|||++||.+|++.+|. +|++++.                          .++++|+||+| +|++   ++|.|    
T Consensus       146 ~~~~~~~dg~~~~~~~l~-ifa~p~~~~~~~P~~~~~~~~~~~~g~~~~~~~~ggg~v~vP~G-~yl~g~~G~i~l----  219 (549)
T 1x0c_A          146 DLISLAPSGARQPENALL-IFASPFENSSTKPQPGSPNSIAPAPGRVLGLNTTSASTVVFNPG-VYYFTGHDHMVL----  219 (549)
T ss_dssp             GEEEETTTTEEEESEEEE-EEEECCCCTTTSCCTTCSSEECCCSEECCCTTTCCCSEEEECSE-EEECCTTCCEEE----
T ss_pred             ccccccccCcCCCcceEE-EEcCChhhccCCCCcCCCCceeeccccccccccCCCCEEEECCe-EEecCCceEEEe----
Confidence            469999999999999887 5554433                          35889999999 8886   58888    


Q ss_pred             cccceE-EEec-ceEEcCCCCcccCCCceeeEEEe-cccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCC
Q 015319          164 CQANII-FQLD-GTIIAPTGSKDWGKGLLWWLDFT-KLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNT  240 (409)
Q Consensus       164 ~~s~~~-l~l~-Gtl~~~~~~~~~~~g~~~~i~~~-~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~  240 (409)
                       +++++ |+++ |..+.            .++.+. +++||+|+|+|+|||+|..||....        ..         
T Consensus       220 -~s~~~~L~l~~GA~L~------------gs~~~~~~~~nv~ItG~GtIDG~G~~ww~~~~--------~~---------  269 (549)
T 1x0c_A          220 -SSSVTWVYFAPGAYVK------------GAVEFLSTASEVKASGHGVLSGEQYVWYADPD--------EG---------  269 (549)
T ss_dssp             -CTTCCEEEECTTEEEE------------SCEEECCCSSEEEEESSCEEECTTSCTTEEGG--------GT---------
T ss_pred             -cCCCCeEecCCCCEEE------------EEEEEecCceeEEEEeeEEEECCCceecccCc--------cc---------
Confidence             78999 9998 64332            123344 8999999999999999999995310        00         


Q ss_pred             CCCCCCCCccccccCCCCCCCceeEEE------EeeeeEEEeceEEecCCCCeEEee-cC-cc--EEEEeEEEeCCCCCC
Q 015319          241 LPYKPPTPIRSELSGKMPSIKPTALRF------YGSFNVTVTGITIQNSPQCHLKFD-NC-IG--VVVHDVSVSSPGDSP  310 (409)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~rp~~i~~------~~~~nv~I~gvti~ns~~~~i~~~-~~-~n--V~I~n~~I~s~~~~~  310 (409)
                                  +. ..-..||++|.|      .+|+|++|+|++++|+++|++++. .| ++  |+|+|+++.++. ..
T Consensus       270 ------------~~-~~~~~rp~~i~~~~~~~~~~c~nV~I~Giti~Nsp~w~i~i~~~~~~ni~V~I~n~~i~~~~-~~  335 (549)
T 1x0c_A          270 ------------YQ-KASGANNNGLRMWRGTLGNSSQTFVLNGVTVSAPPFNSMDWSGNSLDLITCRVDDYKQVGAF-YG  335 (549)
T ss_dssp             ------------TE-ECGGGCSCCCCSEEEECCSSCEEEEEESCEEECCSSCSEEEECSCGGGEEEEEEEEEEECCC-BT
T ss_pred             ------------cc-ccccCCCceEEEeeccccCCceEEEEECcEEECCCceeEEeeccCCCCCeEEEEeeEeEcCC-CC
Confidence                        00 000125667777      999999999999999999999965 56 69  999999998743 36


Q ss_pred             CCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC--CCe-eEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          311 NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP--GHG-ISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       311 n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~--g~G-isIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      |+|||++.  +||+|+||+|.++||||++++  +||+|+||+|..  +|+ |+||+.     .+.|+||+|+||+|.++.
T Consensus       336 NTDGidi~--~nV~I~n~~i~~gDDcIaIks--~NI~I~n~~~~~~~g~~~IsiGs~-----~~~V~NV~v~n~~i~~s~  406 (549)
T 1x0c_A          336 QTDGLEMY--PGTILQDVFYHTDDDGLKMYY--SNVTARNIVMWKESVAPVVEFGWT-----PRNTENVLFDNVDVIHQA  406 (549)
T ss_dssp             TCCCCBCC--TTCEEEEEEEEESSCCEECCS--SSEEEEEEEEEECSSSCSEECCBS-----CCCEEEEEEEEEEEEECC
T ss_pred             CCCccccc--CCEEEEeeEEeCCCCEEEECC--CCEEEEeeEEEcCCCCceEEECCC-----CCcEEEEEEEeeEEECcc
Confidence            89999999  999999999999999999999  999999999975  567 999983     567999999999999886


Q ss_pred             c------eEEEEe---ec-C-------CCCeEEEEEe
Q 015319          388 N------GVRIKT---WQ-V-------MIPSGTQCYN  407 (409)
Q Consensus       388 ~------Gi~Ikt---~~-G-------~~g~v~~~~~  407 (409)
                      +      |.+|++   |+ |       .+|.|+||+.
T Consensus       407 ~~k~~~~g~iI~~~~~~~~g~~~~~~d~~G~i~nI~f  443 (549)
T 1x0c_A          407 YANAGNNPGIFGAVNNYLYAPDGLSSNHSTGNSNMTV  443 (549)
T ss_dssp             CCSGGGCCCSEEECCBTTTCTTSCCSCCCCBEEEEEE
T ss_pred             ccccccceEEEecccccccCccccCcCCCceEccEEE
Confidence            4      666888   31 3       3678887763

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=99.98  E-value=4.6e-32  Score=285.45  Aligned_cols=203  Identities=18%  Similarity=0.204  Sum_probs=158.9

Q ss_pred             cCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCc-ccCC-C--ceeeEEEecccCeeeeeceEEeCCCc
Q 015319          139 VEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSK-DWGK-G--LLWWLDFTKLKGITIQGKGIIDGRGS  214 (409)
Q Consensus       139 ~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~-~~~~-g--~~~~i~~~~~~nVtI~G~G~IdG~G~  214 (409)
                      .++++||||+| +|+++++.|.|| |+     ++.|+|.+..+.+ -|.. |  +..||.+.+++||+|+|+|+|||+|.
T Consensus       229 ~ggg~v~vP~G-~yl~~~~~~~gp-c~-----~g~G~i~lkSnvt~L~L~~GA~l~g~i~~~~~~nv~ItG~GtIDG~G~  301 (574)
T 1ogo_X          229 GAKSILYFPPG-VYWMNQDQSGNS-GK-----LGSNHIRLNSNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENY  301 (574)
T ss_dssp             CSSSEEEECSE-EEEECBCTTCCB-SC-----SSSCCEECCTTCCEEEECTTEEEESCEEECCSSCEEEESSCEEECTTS
T ss_pred             CCCCEEEECCc-EEEEeccccCCc-cc-----ccceEEEecCCCceEEecCCcEEEccEEEeCceeEEEEeCEEEeCCCc
Confidence            47899999999 899966666554 32     2223333333332 2211 1  24568899999999999999999999


Q ss_pred             ccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEE------eeeeEEEeceEEecCCCCeE
Q 015319          215 VWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFY------GSFNVTVTGITIQNSPQCHL  288 (409)
Q Consensus       215 ~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~------~~~nv~I~gvti~ns~~~~i  288 (409)
                      .||....   ..                          +  .....||.++.|.      +|+||+|+|++++|+++|++
T Consensus       302 ~ww~~~~---~~--------------------------~--~~~~~rp~~i~~~~~~~~~~c~NV~I~Giti~NSp~w~i  350 (574)
T 1ogo_X          302 VYQANAG---DN--------------------------Y--IAVKSDSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTM  350 (574)
T ss_dssp             CTTCBTT---TT--------------------------T--BSCCCTTTBCCSEEECSCCSSEEEEEESCEEECCSSCSE
T ss_pred             ccccccc---cc--------------------------c--ccccCCcceEEEEeccccCCceeEEEECeEEECCCCcEE
Confidence            9995420   00                          0  0001367777777      99999999999999999999


Q ss_pred             EeecCccE--EEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC--CCe-eEEEe
Q 015319          289 KFDNCIGV--VVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP--GHG-ISIGS  363 (409)
Q Consensus       289 ~~~~~~nV--~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~--g~G-isIGs  363 (409)
                      ++..|++|  +|+|+++.++. ..++||||++  +||+|+||+|.++||||+|++  +||+|+||+|..  +|| |+|||
T Consensus       351 ~~~~c~nV~~~I~nv~i~~~~-~~nTDGIDi~--~NV~I~nc~I~~gDDcIaIks--~NI~I~nc~i~~g~g~g~IsIGS  425 (574)
T 1ogo_X          351 DFNGNSGISSQISDYKQVGAF-FFQTDGPEIY--PNSVVHDVFWHVNDDAIKIYY--SGASVSRATIWKCHNDPIIQMGW  425 (574)
T ss_dssp             EECSSSCEEEEEEEEEEECCC-STTCCCCBCC--TTCEEEEEEEEESSCSEECCS--TTCEEEEEEEEECSSSCSEECCS
T ss_pred             eecCCCChhhEEEeeEeeCCC-CCCCccCccc--CCEEEEeeEEECCCCEEEECC--ccEEEEeEEEECCCCCceEEEcC
Confidence            99999999  99999998642 2469999999  999999999999999999998  999999999775  567 99998


Q ss_pred             cCCCCCCCcEEEEEEEeEEEecccce
Q 015319          364 LGKDNTKACVSNITVRDVMMHNTMNG  389 (409)
Q Consensus       364 ~g~~~~~~~v~nI~v~n~~~~~~~~G  389 (409)
                      .     .+.|+||+|+||+|.++.++
T Consensus       426 ~-----~g~V~NV~v~N~~i~~~~~~  446 (574)
T 1ogo_X          426 T-----SRDISGVTIDTLNVIHTRYI  446 (574)
T ss_dssp             S-----CCCEEEEEEEEEEEEECCCS
T ss_pred             C-----CCcEEEEEEEeEEEECCccc
Confidence            3     57899999999999987653

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A*

Probab=99.97  E-value=9.7e-32  Score=268.41  Aligned_cols=212  Identities=16%  Similarity=0.156  Sum_probs=163.2

Q ss_pred             CceEEEeeccccCCCCCccHHHHHHHHHHHhhc-CCcEEEECCce---EEEe-CCcccCCCccccceEEEecc--eEEcC
Q 015319          107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKV-EASIMVVPAES---VFLV-GPMSFSGPYCQANIIFQLDG--TIIAP  179 (409)
Q Consensus       107 ~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~-gg~~v~vP~G~---~y~~-~~i~l~g~~~~s~~~l~l~G--tl~~~  179 (409)
                      ..++||+||||+|||++|||+|||+||++||+. +|++||||+|.   +|++ ++|.|     +++++|.+++  +|+.+
T Consensus        49 s~~~NVkDFGAkGDGvTDDTaAIQkAIdaA~a~~GGGtVyVPaG~~~~tYlvt~tI~L-----kSnV~L~Ge~~AtIl~s  123 (514)
T 2vbk_A           49 KEAISILDFGVIDDGVTDNYQAIQNAIDAVASLPSGGELFIPASNQAVGYIVGSTLLI-----PGGVNIRGVGKASQLRA  123 (514)
T ss_dssp             TTCCBGGGGCCCCSSSSCCHHHHHHHHHHHHTSTTCEEEECCCCSSTTCEEESSCEEE-----CTTEEEECCSTTSEEEE
T ss_pred             CcEEEeeccCcCCCCCcccHHHHHHHHHHHhhcCCCeEEEECCCCcceeEEECCeEEe-----cCCeEEEEecCceEeec
Confidence            468999999999999999999999999999987 78999999993   4655 67777     7899999884  55443


Q ss_pred             CCC-c-c-cCCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCC
Q 015319          180 TGS-K-D-WGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGK  256 (409)
Q Consensus       180 ~~~-~-~-~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (409)
                      ... . . .......|+.+.+++||+|+|+|+|||++..|+...                                    
T Consensus       124 ~~~I~GtIia~~y~s~I~~~~VeNIaITG~GTIDG~g~n~t~e~------------------------------------  167 (514)
T 2vbk_A          124 KSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNTCNGIDTNITAED------------------------------------  167 (514)
T ss_dssp             CTTCCSEEEEECCCSCCSCEEEESCEEECCSSSEEEEESCCTTC------------------------------------
T ss_pred             cccccccEEeccCCccccccCceEEEEECCCeEeCCCCCccccc------------------------------------
Confidence            221 0 0 000123567788999999999999999876442111                                    


Q ss_pred             CCCCCceeEEEEeeeeEEEeceEE--ecCCCCeEEeecCccEEEE-eEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC
Q 015319          257 MPSIKPTALRFYGSFNVTVTGITI--QNSPQCHLKFDNCIGVVVH-DVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG  333 (409)
Q Consensus       257 ~~~~rp~~i~~~~~~nv~I~gvti--~ns~~~~i~~~~~~nV~I~-n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g  333 (409)
                      ....++..+   .+++|.|++++.  .+++.|++++..|++++++ ++.+.             ++|+||+|.||.|+.|
T Consensus       168 ~~~Rq~~~~---~fdnV~Vn~Vt~~v~~Sg~WTIhPi~Cqnvt~r~gL~f~-------------eSCrNV~IsnC~FsVG  231 (514)
T 2vbk_A          168 SVIRQVYGW---VFDNVMVNEVETAYLMQGLWHSKFIACQAGTCRVGLHFL-------------GQCVSVSVSSCHFSRG  231 (514)
T ss_dssp             SSCCCEESE---EEESCEEEEEEEEEEEESEEEEEEESCEEEEEEEEEEEE-------------SCCEEEEEESCEEECT
T ss_pred             eeeeccceE---EeeeEEEEeEEEeEeccCcEEEeEeccCceecccCcccc-------------CCCCeEEEeccEEecC
Confidence            000122233   367999999954  4788999999999999988 66654             3799999999999999


Q ss_pred             CCeEEeCCC-----------ceeEEEEEEEEcCCCe-eEEEecCCCCCCCcEEE-EEEEeEEEeccc
Q 015319          334 DDCVSIQTG-----------CSNVYVHNVNCGPGHG-ISIGSLGKDNTKACVSN-ITVRDVMMHNTM  387 (409)
Q Consensus       334 DD~Iai~sg-----------~~nV~I~n~~~~~g~G-isIGs~g~~~~~~~v~n-I~v~n~~~~~~~  387 (409)
                      ||||++++|           ++||.         || +.||||.   +.++|+| |+|++|.|.+++
T Consensus       232 DdciaiksGk~~~~~~~~~~se~~~---------hgav~igSE~---m~~Gvk~~v~v~~Clf~~td  286 (514)
T 2vbk_A          232 NYSADESFGIRIQPQTYAWSSEAVR---------SEAIILDSET---MCIGFKNAVYVHDCLDLHME  286 (514)
T ss_dssp             TSCCTTCEEEEEECBCCTTTSSCBC---------CEEEEEESSE---EEESCSEEEEESCCEEEEEE
T ss_pred             cceeeeecCceecccccCCcchhcc---------cccEEECchh---hcccccccEEEEeeeccCCc
Confidence            999999997           55665         76 9999982   4567999 999999998763

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=99.96  E-value=3.5e-28  Score=244.20  Aligned_cols=225  Identities=22%  Similarity=0.333  Sum_probs=163.4

Q ss_pred             eEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeC--------CcccCCCccccceEEEecc---e-E
Q 015319          109 VFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVG--------PMSFSGPYCQANIIFQLDG---T-I  176 (409)
Q Consensus       109 ~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~--------~i~l~g~~~~s~~~l~l~G---t-l  176 (409)
                      +++|+||||+|||++|||+|||+||++|++.++++|+||+| +|++.        +|.+     +++++|+++|   + |
T Consensus         2 ~~~v~~~ga~~dg~~ddt~aiq~Ai~~a~~~gg~~v~~p~G-~y~~~~~~~~~~g~l~~-----~~~v~l~g~g~~~t~l   75 (377)
T 2pyg_A            2 DYNVKDFGALGDGVSDDRASIQAAIDAAYAAGGGTVYLPAG-EYRVSAAGEPGDGCLML-----KDGVYLAGAGMGETVI   75 (377)
T ss_dssp             CEEGGGGTCCCEEEEECHHHHHHHHHHHHHTTSEEEEECSE-EEEECCCSSGGGCSEEC-----CTTEEEEESSBTTEEE
T ss_pred             EeeeeecCCCCCCCcchHHHHHHHHHHHHhcCCCEEEECCe-EEEEcccccCCcccEEe-----cCCeEEEEcCCCCcEE
Confidence            68999999999999999999999999999888999999999 78874        6776     7899999985   4 4


Q ss_pred             EcCCCCcccCCCc-----eeeEEEecccCeeeeec-----eEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCC
Q 015319          177 IAPTGSKDWGKGL-----LWWLDFTKLKGITIQGK-----GIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPP  246 (409)
Q Consensus       177 ~~~~~~~~~~~g~-----~~~i~~~~~~nVtI~G~-----G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  246 (409)
                      ++.++...+..+.     ..-..+..++|++|.|.     |++||    ||....   +                     
T Consensus        76 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~I~G~~~~~~G~idG----w~~~~~---~---------------------  127 (377)
T 2pyg_A           76 KLIDGSDQKITGMVRSAYGEETSNFGMRDLTLDGNRDNTSGKVDG----WFNGYI---P---------------------  127 (377)
T ss_dssp             EECTTCBSCEEEEEECCTTSCCEEEEEEEEEEECCGGGCBSCEEE----EEECSC---T---------------------
T ss_pred             EecCCCccCccceEeccCCCcceEEEEEEEEEECCCccCCccccc----eecccC---c---------------------
Confidence            5555443321110     00013457889999997     88887    886520   0                     


Q ss_pred             CCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCCCCeEEeecCc-cEEEEeEEEeCCC------------------
Q 015319          247 TPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCI-GVVVHDVSVSSPG------------------  307 (409)
Q Consensus       247 ~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~-nV~I~n~~I~s~~------------------  307 (409)
                                .        .+..|++++|+++++++++.|++++..|. +++++|+.+....                  
T Consensus       128 ----------~--------~~~~~~nv~I~~~~i~n~~~~gi~~~~~~~~~~i~n~~~~~~~~dGI~~~~s~~~~i~~N~  189 (377)
T 2pyg_A          128 ----------G--------GDGADRDVTIERVEVREMSGYGFDPHEQTINLTIRDSVAHDNGLDGFVADYLVDSVFENNV  189 (377)
T ss_dssp             ----------T--------SSCCEEEEEEEEEEEECCSSCSEEECSSEEEEEEESCEEESCSSCSEEEESEEEEEEESCE
T ss_pred             ----------c--------ccccccceEEEeEEEEecccceEEeecccCCeEEEeEEeecCCCCceeEeccCCcEEECcE
Confidence                      0        11368899999999999999999888775 5677777663310                  


Q ss_pred             -CCCCCCceeecC-cccEEEEeeEEeeCCCeEEeC-------CCceeEEEEEEEEcC--CCeeEEEecCCCCCCCcEEEE
Q 015319          308 -DSPNTDGIHLQN-SKDVLIHTSNLACGDDCVSIQ-------TGCSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNI  376 (409)
Q Consensus       308 -~~~n~DGI~l~~-s~nV~I~n~~i~~gDD~Iai~-------sg~~nV~I~n~~~~~--g~GisIGs~g~~~~~~~v~nI  376 (409)
                       ...++|||++.. |++++|++|.+...++|+++.       ..+++++|++|++.+  .+|+.+..         ++++
T Consensus       190 ~~~~~~~GI~~~~~s~~v~I~nN~i~~~~~g~~~~~~g~~~~~~s~nv~i~~N~~~~n~~~Gi~~~~---------~~~v  260 (377)
T 2pyg_A          190 AYANDRHGFNVVTSTHDFVMTNNVAYGNGSSGLVVQRGLEDLALPSNILIDGGAYYDNAREGVLLKM---------TSDI  260 (377)
T ss_dssp             EESCSSCSEEEETTCEEEEEESCEEESCSSCSEEEECCSSCCCCCEEEEEESCEEESCSSCSEEEEE---------EEEE
T ss_pred             EEccccCcEEEEeccCCeEEECCEEECccCceEEEeccccCCCCCccEEEECCEEEcCccCceEecc---------ccCe
Confidence             013567777655 677777777777666666662       346777777777665  45666532         7899


Q ss_pred             EEEeEEEecc-cceEEEEe
Q 015319          377 TVRDVMMHNT-MNGVRIKT  394 (409)
Q Consensus       377 ~v~n~~~~~~-~~Gi~Ikt  394 (409)
                      +|+||+|.++ ..||+|+.
T Consensus       261 ~i~~N~i~~~~~~GI~i~g  279 (377)
T 2pyg_A          261 TLQNADIHGNGSSGVRVYG  279 (377)
T ss_dssp             EEESCEEESCSSCSEEEEE
T ss_pred             EEECCEEECCCCceEEEec
Confidence            9999999988 79999984

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=99.88  E-value=4.1e-22  Score=212.15  Aligned_cols=221  Identities=19%  Similarity=0.255  Sum_probs=161.3

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhhcCC---------cEEEECCceEEEe-CCcccCCCccccceEEEecc-
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEA---------SIMVVPAESVFLV-GPMSFSGPYCQANIIFQLDG-  174 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg---------~~v~vP~G~~y~~-~~i~l~g~~~~s~~~l~l~G-  174 (409)
                      ....+||+||||+|||++|||+|||+||++|.+.|+         ++||||+| +|++ ++|.+     .+++.|..++ 
T Consensus        46 y~v~~nV~dfGA~GDG~tDDT~Aiq~Ai~~a~~~Gggc~~st~~~~~V~~P~G-tYlvs~tI~l-----~~~t~L~G~~~  119 (758)
T 3eqn_A           46 YPVFRNVKNYGAKGDGNTDDTAAIQAAINAGGRCGQGCDSTTTQPALVYFPPG-TYKVSSPLVV-----LYQTQLIGDAK  119 (758)
T ss_dssp             CCSEEEGGGGTCCCEEEEECHHHHHHHHHTTSCSCTTCCCCSSSCEEEEECSS-EEEESSCEEC-----CTTEEEEECSS
T ss_pred             CeEEEEHHHcCcCCCCCchhHHHHHHHHHHhhhcccccccccccceEEEECCc-eEEEcccEEc-----cCCeEEEecCC
Confidence            346789999999999999999999999998766544         59999999 6765 68988     6899999985 


Q ss_pred             ---eEEcCCCCcccCCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccc
Q 015319          175 ---TIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRS  251 (409)
Q Consensus       175 ---tl~~~~~~~~~~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (409)
                         +|++..++..     ..+          |.+ ..++++|..||..                                
T Consensus       120 ~~pvIka~~~F~G-----~~l----------i~~-d~y~~~G~~w~~~--------------------------------  151 (758)
T 3eqn_A          120 NLPTLLAAPNFSG-----IAL----------IDA-DPYLAGGAQYYVN--------------------------------  151 (758)
T ss_dssp             SCCEEEECTTCCS-----SCS----------EES-SCBCGGGCBSSCG--------------------------------
T ss_pred             CCCeEecCCCCCC-----cce----------eec-cccCCCCcccccc--------------------------------
Confidence               6777555421     111          333 3455677777733                                


Q ss_pred             cccCCCCCCCceeEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCC-CCCCceeecCcccEEEEeeEE
Q 015319          252 ELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDS-PNTDGIHLQNSKDVLIHTSNL  330 (409)
Q Consensus       252 ~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~-~n~DGI~l~~s~nV~I~n~~i  330 (409)
                                 +...++.++|++|+ ++..+....+|++..|+++.|+||.|..+..+ ...+||++++++++.|+|++|
T Consensus       152 -----------~~~F~r~irNlviD-~t~~~~~~~gIhw~vaQatsL~Nv~i~m~~~sg~~~~GI~~e~GSgg~i~Dl~f  219 (758)
T 3eqn_A          152 -----------QNNFFRSVRNFVID-LRQVSGSATGIHWQVSQATSLINIVFQMSTAAGNQHQGIFMENGSGGFLGDLVF  219 (758)
T ss_dssp             -----------GGCCCEEEEEEEEE-CTTCSSCEEEEECCCCSSEEEEEEEEECCCSTTCCEEEEEECSCCCCEEEEEEE
T ss_pred             -----------ccceeeeecceEEe-ccccCCCceEEEEEecCceEEEEEEEEecCCCCCcceeEEecCCCceEEEeeEE
Confidence                       12345688899998 66666667889999999999999999997554 459999999999999999999


Q ss_pred             eeCCCeEEeCCC---ceeEEEEEEE-----------------EcC-CCeeEEEecCCCC-CCCcEEEEEEEeEEEecccc
Q 015319          331 ACGDDCVSIQTG---CSNVYVHNVN-----------------CGP-GHGISIGSLGKDN-TKACVSNITVRDVMMHNTMN  388 (409)
Q Consensus       331 ~~gDD~Iai~sg---~~nV~I~n~~-----------------~~~-g~GisIGs~g~~~-~~~~v~nI~v~n~~~~~~~~  388 (409)
                      ..|+-++.++..   .+|++|+||.                 |.+ .-||.+-+.+... ....+-.|++.|.++.|+..
T Consensus       220 ~GG~~G~~~gnQQfT~rnltF~~~~taI~~~w~wgwt~~~~~i~nc~vGi~~~~g~~~~~~~q~vGsv~l~Ds~~~n~~~  299 (758)
T 3eqn_A          220 NGGNIGATFGNQQFTVRNLTFNNANTAINAIWNWGWTFQRITINNCQVGFDLTQGGTSNTGAQGVGAEAIIDAVVTNTQT  299 (758)
T ss_dssp             ESCSEEEEEECSCCEEEEEEEESCSEEEEEEEBSCEEEEEEEEESCSEEEEECCCCSSTTSCCCBCEEEEEEEEEESCSE
T ss_pred             eCCceEEEcCCcceEEeccEEeChHHHHhhhcCceEEEEEeEEECCCccEEEcCCCCCcccCcceeeEEEEEeeEEcccc
Confidence            999999988653   5677666662                 222 1244443321100 12346688888888888765


Q ss_pred             eEEE
Q 015319          389 GVRI  392 (409)
Q Consensus       389 Gi~I  392 (409)
                      +|..
T Consensus       300 ~i~t  303 (758)
T 3eqn_A          300 FVRW  303 (758)
T ss_dssp             EEEE
T ss_pred             eEEe
Confidence            5543

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=99.72  E-value=1.1e-16  Score=164.63  Aligned_cols=138  Identities=15%  Similarity=0.194  Sum_probs=116.3

Q ss_pred             eEEEEeeeeEEEeceEEecC--CCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecC------------cccEEEEeeE
Q 015319          264 ALRFYGSFNVTVTGITIQNS--PQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN------------SKDVLIHTSN  329 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns--~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~------------s~nV~I~n~~  329 (409)
                      .+++..|+|++|++++|.+.  ...+|++..|++|+|+||+|.+     .+|+|.+.+            |+||+|+||+
T Consensus       215 ~i~~~~~~nv~i~~v~I~~~~~NtDGidi~~s~nV~I~n~~i~~-----gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~  289 (448)
T 3jur_A          215 CIHPVLSENVIIRNIEISSTGPNNDGIDPESCKYMLIEKCRFDT-----GDDSVVIKSGRDADGRRIGVPSEYILVRDNL  289 (448)
T ss_dssp             SEEEESCEEEEEESCEEEECSTTCCSBCCBSCEEEEEESCEEEE-----SSEEEEEBCCCHHHHHHHCCCEEEEEEESCE
T ss_pred             eEeeeccCCEEEEeEEEeeccCCCccccccCCcCEEEEeeEEEe-----CCCcEEeccCccccccccCCCceeEEEEEeE
Confidence            57889999999999999985  2446999999999999999998     567777753            7999999999


Q ss_pred             E--eeCCCeEEeCCC----ceeEEEEEEEEcCC-CeeEEEecCCCCCCCcEEEEEEEeEEEecccceE-EEEeecC----
Q 015319          330 L--ACGDDCVSIQTG----CSNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNTMNGV-RIKTWQV----  397 (409)
Q Consensus       330 i--~~gDD~Iai~sg----~~nV~I~n~~~~~g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi-~Ikt~~G----  397 (409)
                      +  ..+..||+|++.    ++||+|+||+|.+. +|+.|++...  .++.|+||+|+|++|.+..+++ .|+.+.+    
T Consensus       290 ~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~GirIKt~~g--~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~~  367 (448)
T 3jur_A          290 VISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSR--RGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEG  367 (448)
T ss_dssp             EECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEEEEECCTT--TCSEEEEEEEESCEEEEESSEEEEEESCGGGCCC
T ss_pred             EecCCCcceEEECCcccCcEEEEEEEEEEEecccceEEEEEEcC--CCceEeeEEEEEEEEECCccccEEEEeeccCCCC
Confidence            9  455569999874    69999999999884 7999998642  4578999999999999999988 9988654    


Q ss_pred             -CCCeEEEEEeC
Q 015319          398 -MIPSGTQCYNS  408 (409)
Q Consensus       398 -~~g~v~~~~~~  408 (409)
                       ..+.++||+.+
T Consensus       368 ~~~~~i~nI~~~  379 (448)
T 3jur_A          368 EYLPVVRSVFVK  379 (448)
T ss_dssp             SCCCEEEEEEEE
T ss_pred             CCCceEEEEEEE
Confidence             45688998764

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=99.69  E-value=2.2e-15  Score=151.70  Aligned_cols=187  Identities=18%  Similarity=0.224  Sum_probs=145.5

Q ss_pred             ccceEEEecceEEcCCCC------cccCCC------------ceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCC
Q 015319          165 QANIIFQLDGTIIAPTGS------KDWGKG------------LLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPI  226 (409)
Q Consensus       165 ~s~~~l~l~Gtl~~~~~~------~~~~~g------------~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~  226 (409)
                      .++++|...|+|-.....      ..|+..            .-.+|.|.+++|+.|+|-=+.+..              
T Consensus       108 ~~ni~I~G~G~IdG~G~~~~~~~~~~ww~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~iti~nsp--------------  173 (376)
T 1bhe_A          108 TTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--------------  173 (376)
T ss_dssp             CBSCEEECSSEEECCTTSCCSSSSSCTTHHHHHHHHHTCEECCCCSEEEESCEEEEEEEEEEECCS--------------
T ss_pred             CEeEEEEeCEEEECCCCcccCCCccccccccccccccCccCCCCeEEEEEcceEEEEEeEEEECCC--------------
Confidence            478888888888765431      234321            124688999999999983222211              


Q ss_pred             CccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCC----CCeEEeecCccEEEEeEE
Q 015319          227 DDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSP----QCHLKFDNCIGVVVHDVS  302 (409)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~----~~~i~~~~~~nV~I~n~~  302 (409)
                                                         -..+.+.+|+|++|++++|.+..    ..+|++.+|++|+|+||+
T Consensus       174 -----------------------------------~~~i~~~~~~~v~i~~v~I~~~~~~~NtDGid~~~s~nV~I~n~~  218 (376)
T 1bhe_A          174 -----------------------------------NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSN  218 (376)
T ss_dssp             -----------------------------------SCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCE
T ss_pred             -----------------------------------cEEEEEeCCCcEEEEeEEEECCCCCCCCceEeecCCceEEEEeCE
Confidence                                               02467889999999999999853    346999999999999999


Q ss_pred             EeCCCCCCCCCceeec------CcccEEEEeeEEeeCCCeEEeCC---CceeEEEEEEEEcC-CCeeEEEecCCCCCCCc
Q 015319          303 VSSPGDSPNTDGIHLQ------NSKDVLIHTSNLACGDDCVSIQT---GCSNVYVHNVNCGP-GHGISIGSLGKDNTKAC  372 (409)
Q Consensus       303 I~s~~~~~n~DGI~l~------~s~nV~I~n~~i~~gDD~Iai~s---g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~  372 (409)
                      |.+     .+|+|.+.      .|+||+|+||++..+ .+|+|++   +.+||+|+||++.+ .+|+.|.+.-  ...+.
T Consensus       219 i~~-----gDDcIaiks~~~~~~s~nI~I~n~~~~~g-hGisiGSe~~~v~nV~v~n~~~~~t~~GirIKt~~--g~~G~  290 (376)
T 1bhe_A          219 IAT-----GDDNVAIKAYKGRAETRNISILHNDFGTG-HGMSIGSETMGVYNVTVDDLKMNGTTNGLRIKSDK--SAAGV  290 (376)
T ss_dssp             EEC-----SSCSEEEEECTTSCCEEEEEEEEEEECSS-SCEEEEEEESSEEEEEEEEEEEESCSEEEEEECCT--TTCCE
T ss_pred             Eec-----CCCeEEEcccCCCCCceEEEEEeeEEEcc-ccEEeccCCccEeeEEEEeeEEeCCCcEEEEEEec--CCCce
Confidence            998     68999998      599999999999876 5699975   68999999999998 4699999752  25678


Q ss_pred             EEEEEEEeEEEecccceEEEEeecCC-----CCeEEEEEeC
Q 015319          373 VSNITVRDVMMHNTMNGVRIKTWQVM-----IPSGTQCYNS  408 (409)
Q Consensus       373 v~nI~v~n~~~~~~~~Gi~Ikt~~G~-----~g~v~~~~~~  408 (409)
                      |+||+|+|++|.+..++|.|......     .+.++||+.+
T Consensus       291 v~ni~f~ni~~~~v~~~i~i~~~y~~~~~~~~~~i~ni~~~  331 (376)
T 1bhe_A          291 VNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDWSDITFK  331 (376)
T ss_dssp             EEEEEEEEEEEESCSEEEEEETTSSCCCCCCCCEEEEEEEE
T ss_pred             EeeEEEEeEEEeCCCceEEEEeeccCCCCCcCcEEEEEEEE
Confidence            99999999999999999999864421     3567887753

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=99.68  E-value=2.3e-15  Score=149.71  Aligned_cols=137  Identities=18%  Similarity=0.227  Sum_probs=116.5

Q ss_pred             eEEEEeeeeEEEeceEEecCC--------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319          264 ALRFYGSFNVTVTGITIQNSP--------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD  335 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~--------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD  335 (409)
                      .+.+..|+|++|++++|.++.        ..++++..|++|+|+|++|.+     .+|+|.+.+++||+|+||++..++ 
T Consensus       125 ~i~i~~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~-----gDDciaiksg~nI~i~n~~~~~gh-  198 (339)
T 2iq7_A          125 AFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVKN-----QDDCLAINSGTNITFTGGTCSGGH-  198 (339)
T ss_dssp             CEEEESCEEEEEESCEEECGGGGGTTCCSCCSEEEESCEEEEEESCEEEC-----SSCSEEESSEEEEEEESCEEESSC-
T ss_pred             eEEEeccCCEEEEEEEEECCccccccCCCCCcEEEcCcceEEEEecEEec-----CCCEEEEcCCccEEEEeEEEECCc-
Confidence            588899999999999999753        335999999999999999998     789999999999999999999885 


Q ss_pred             eEEeCC-------CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccc-eEEEEeec---------C
Q 015319          336 CVSIQT-------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMN-GVRIKTWQ---------V  397 (409)
Q Consensus       336 ~Iai~s-------g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~-Gi~Ikt~~---------G  397 (409)
                      +|+|++       +++||+|+||++.+ .+|+.|.+..  +..+.|+||+|+|++|.+..+ +|.|....         +
T Consensus       199 GisiGSlg~~~~~~v~nV~v~n~~~~~~~~girIkt~~--g~~G~v~nI~~~ni~~~~v~~~~i~i~~~y~~~~~~~~p~  276 (339)
T 2iq7_A          199 GLSIGSVGGRSDNTVKTVTISNSKIVNSDNGVRIKTVS--GATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPT  276 (339)
T ss_dssp             CEEEEEESSSSCCEEEEEEEEEEEEESCSEEEEEEEET--TCCCEEEEEEEEEEEEEEESSEEEEEEEEEETTEECSCCC
T ss_pred             eEEECcCCcccCCCEEEEEEEeeEEECCCcEEEEEEeC--CCCeEEEEEEEEeEEccCcccccEEEEeecCCCCCCCCCC
Confidence            799976       27999999999988 5699999863  245789999999999999876 99998642         2


Q ss_pred             CCCeEEEEEeC
Q 015319          398 MIPSGTQCYNS  408 (409)
Q Consensus       398 ~~g~v~~~~~~  408 (409)
                      ....++||+.+
T Consensus       277 ~~~~i~ni~~~  287 (339)
T 2iq7_A          277 NGVPITGLTLS  287 (339)
T ss_dssp             SSSCEEEEEEE
T ss_pred             CCceEEEEEEE
Confidence            23578888753

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=99.65  E-value=2.9e-15  Score=159.64  Aligned_cols=132  Identities=14%  Similarity=0.129  Sum_probs=110.8

Q ss_pred             eEEEEeeeeEEEeceEEecC--C-CCeEEeecCccEEEEeEEEeCCCC------CCCCCceeecCcccEEEEeeEEeeCC
Q 015319          264 ALRFYGSFNVTVTGITIQNS--P-QCHLKFDNCIGVVVHDVSVSSPGD------SPNTDGIHLQNSKDVLIHTSNLACGD  334 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns--~-~~~i~~~~~~nV~I~n~~I~s~~~------~~n~DGI~l~~s~nV~I~n~~i~~gD  334 (409)
                      .+.+.+|+|++|+++++.+.  + ..+|++.+|++|+|+||+|.+.++      +.+.||++...|+||+|+||++..++
T Consensus       356 ~i~~~~~~nv~i~~v~i~~~~~~NtDGidi~~s~nV~I~n~~i~~gDD~Iaiksg~~~~g~~~~~s~nI~I~n~~~~~gh  435 (608)
T 2uvf_A          356 GIMNLENHNVVANGLIHQTYDANNGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGH  435 (608)
T ss_dssp             SEEEESCEEEEEESCEEECTTCTTCCSEEEESCEEEEEESCEEECSSCSEEEECCCSGGGGGSCCEEEEEEESCEECSSS
T ss_pred             EEEEecCCCEEEeeEEEcCCCCCCCCeEEecCCceEEEEeeEEecCCceEEecCCcCccccccccccCEEEEeEEEeCCC
Confidence            57889999999999998752  2 346999999999999999998543      23455555556899999999999999


Q ss_pred             CeEEeCC----CceeEEEEEEEEcCC-CeeEEEecCCCCCCCcEEEEEEEeEEEecc-cceEEEEeecC
Q 015319          335 DCVSIQT----GCSNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNT-MNGVRIKTWQV  397 (409)
Q Consensus       335 D~Iai~s----g~~nV~I~n~~~~~g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~~-~~Gi~Ikt~~G  397 (409)
                      +++++++    +++||+|+||+|.+. +||.|++...  .++.|+||+|+|++|.+. .++|.|+.+.+
T Consensus       436 g~~~iGS~~~~~v~nI~v~n~~~~~t~~GirIKt~~g--~gG~v~nI~~~ni~m~~v~~~~i~I~~~y~  502 (608)
T 2uvf_A          436 GAIVTGSHTGAWIEDILAENNVMYLTDIGLRAKSTST--IGGGARNVTFRNNAMRDLAKQVMVMTLDYA  502 (608)
T ss_dssp             CSEEEESCCTTCEEEEEEESCEEESCSEEEEEEEETT--TCCEEEEEEEEEEEEEEESSEEEEEEEECC
T ss_pred             CeEEEcccCCCCEEEEEEEeEEEECCCceEEEeeecC--CCceEECcEEEeeEEEccccccEEEEeccC
Confidence            9988887    469999999999985 7999998642  457799999999999999 59999998765

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=99.64  E-value=1e-14  Score=144.94  Aligned_cols=137  Identities=18%  Similarity=0.209  Sum_probs=116.1

Q ss_pred             eEEEEeeeeEEEeceEEecCC--------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319          264 ALRFYGSFNVTVTGITIQNSP--------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD  335 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~--------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD  335 (409)
                      .+.+..|+|++|++++|.++.        ..+|++..|++|+|+|++|.+     .+|+|.+.+++||+|+||++..+. 
T Consensus       129 ~i~i~~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~~-----gDDcIaiksg~nI~i~n~~~~~gh-  202 (339)
T 1ia5_A          129 VFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYN-----QDDCVAVNSGENIYFSGGYCSGGH-  202 (339)
T ss_dssp             CEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEEC-----SSCSEEESSEEEEEEESCEEESSS-
T ss_pred             eEEEecccCeEEeeEEEECCccccccCCCCCcEEecCCceEEEEeeEEEc-----CCCeEEEeCCeEEEEEeEEEECCc-
Confidence            578899999999999999752        345999999999999999998     789999999999999999999874 


Q ss_pred             eEEeCC-------CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccc-eEEEEeecC-------CC
Q 015319          336 CVSIQT-------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMN-GVRIKTWQV-------MI  399 (409)
Q Consensus       336 ~Iai~s-------g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~-Gi~Ikt~~G-------~~  399 (409)
                      +|+|++       +.+||+|+||++.+ .+|+.|.+..  +..+.|+||+|+|++|.+..+ +|.|....+       ..
T Consensus       203 GisiGS~g~~~~~~v~nV~v~n~~~~~t~~girIKt~~--g~~G~v~nI~~~ni~~~~v~~~~i~i~~~y~~~~~~p~~~  280 (339)
T 1ia5_A          203 GLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNI--DTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTG  280 (339)
T ss_dssp             CEEEEEECSSSCCEEEEEEEEEEEEESCSEEEEEEEET--TCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTSCCCSS
T ss_pred             eEEECcCCcccCCCEEEEEEEeeEEECCCcEEEEEEeC--CCCcEEEeeEEEEEEEECcccccEEEEccCCCCCCCCcCC
Confidence            799966       27999999999998 5699998853  245789999999999999876 999987532       23


Q ss_pred             CeEEEEEeC
Q 015319          400 PSGTQCYNS  408 (409)
Q Consensus       400 g~v~~~~~~  408 (409)
                      ..++||..+
T Consensus       281 ~~i~ni~~~  289 (339)
T 1ia5_A          281 VPITDFVLD  289 (339)
T ss_dssp             SCEEEEEEE
T ss_pred             ceEEEEEEE
Confidence            567877653

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=99.63  E-value=2.7e-14  Score=142.47  Aligned_cols=136  Identities=15%  Similarity=0.199  Sum_probs=115.0

Q ss_pred             eEEEEeeeeEEEeceEEecCC----------------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEe
Q 015319          264 ALRFYGSFNVTVTGITIQNSP----------------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHT  327 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~----------------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n  327 (409)
                      .+.+.+|+|++|++++|.+++                ..+|++..|++|+|+|++|.+     .+|+|.+.+++||+|+|
T Consensus       129 ~i~i~~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~~s~nV~I~n~~i~~-----gDDcIaiksg~nI~i~n  203 (349)
T 1hg8_A          129 CFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYN-----QDDCVAVTSGTNIVVSN  203 (349)
T ss_dssp             EEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEEC-----SSCSEEESSEEEEEEEE
T ss_pred             eEEEeccCCEEEEEEEEECCCCccccccccccccCCCCCeEEEccccEEEEEeeEEec-----CCCeEEeeCCeEEEEEe
Confidence            688999999999999999752                335999999999999999998     78999999999999999


Q ss_pred             eEEeeCCCeEEeCC-------CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc-ceEEEEeecC-
Q 015319          328 SNLACGDDCVSIQT-------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKTWQV-  397 (409)
Q Consensus       328 ~~i~~gDD~Iai~s-------g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~-~Gi~Ikt~~G-  397 (409)
                      |++..+. +|+|++       +++||+|+||++.+ .+|+.|.+..  +..+.|+||+|+|++|.+.. ++|.|..... 
T Consensus       204 ~~~~~gh-GisiGS~G~~~~~~v~nV~v~n~~~~~~~~GirIKt~~--g~~G~v~nI~~~ni~~~~v~~~~i~i~~~Y~~  280 (349)
T 1hg8_A          204 MYCSGGH-GLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNS--GATGTINNVTYQNIALTNISTYGVDVQQDYLN  280 (349)
T ss_dssp             EEEESSC-CEEEEEESSSSCCEEEEEEEEEEEEEEEEEEEEEEEET--TCCEEEEEEEEEEEEEEEEEEEEEEEEEEECS
T ss_pred             EEEeCCc-ceEEccccccccCCEEEEEEEEEEEECCCcEEEEEecC--CCCccccceEEEEEEEEccccccEEEEeeccC
Confidence            9999875 699965       28999999999998 5799999863  24577999999999999986 7999987532 


Q ss_pred             --------CCCeEEEEEe
Q 015319          398 --------MIPSGTQCYN  407 (409)
Q Consensus       398 --------~~g~v~~~~~  407 (409)
                              ....++||..
T Consensus       281 ~~~~~~p~~~~~i~~I~~  298 (349)
T 1hg8_A          281 GGPTGKPTNGVKISNIKF  298 (349)
T ss_dssp             SSBCSCCCSSEEEEEEEE
T ss_pred             CCCCCcccCCceEEEEEE
Confidence                    1246777765

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=99.63  E-value=2.1e-14  Score=142.63  Aligned_cols=135  Identities=19%  Similarity=0.252  Sum_probs=114.2

Q ss_pred             eEEEEeeeeEEEeceEEecCC--------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319          264 ALRFYGSFNVTVTGITIQNSP--------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD  335 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~--------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD  335 (409)
                      .+.+. |+|++|++++|.+..        ..+|++..|++|+|+|++|.+     .+|+|.+.+++||+|+||++..+. 
T Consensus       125 ~i~i~-~~nv~i~~~~I~~~~~d~~~~~ntDGidi~~s~nV~I~n~~i~~-----gDDciaiksg~nI~i~n~~~~~gh-  197 (336)
T 1nhc_A          125 AISVQ-ATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKN-----QDDCIAINSGESISFTGGTCSGGH-  197 (336)
T ss_dssp             CEEEE-EEEEEEESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEES-----SSEEEEESSEEEEEEESCEEESSS-
T ss_pred             EEEEE-eCCEEEEEEEEECCCcccccCCCCCcEEecCCCeEEEEeCEEEc-----CCCEEEEeCCeEEEEEeEEEECCc-
Confidence            57888 999999999999863        345999999999999999998     789999999999999999999874 


Q ss_pred             eEEeCC-------CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccc-eEEEEeecC---------
Q 015319          336 CVSIQT-------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMN-GVRIKTWQV---------  397 (409)
Q Consensus       336 ~Iai~s-------g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~-Gi~Ikt~~G---------  397 (409)
                      +|+|++       +.+||+|+||++.+ .+|+.|.+..  +..+.|+||+|+|++|.+..+ +|.|.....         
T Consensus       198 GisiGS~g~~~~~~v~nV~v~n~~~~~t~~girIkt~~--g~~G~v~nI~~~ni~~~~v~~~~i~i~~~y~~~~~~~~p~  275 (336)
T 1nhc_A          198 GLSIGSVGGRDDNTVKNVTISDSTVSNSANGVRIKTIY--KETGDVSEITYSNIQLSGITDYGIVIEQDYENGSPTGTPS  275 (336)
T ss_dssp             EEEEEEESSSSCCEEEEEEEEEEEEESCSEEEEEEEET--TCCCEEEEEEEEEEEEEEESSEEEEEEEEEETTEECSCCC
T ss_pred             CceEccCccccCCCEEEEEEEeeEEECCCcEEEEEEEC--CCCCEEeeeEEeeEEeeccccccEEEEeecCCCCCCCCCC
Confidence            799976       27999999999988 5699999852  245789999999999999876 999976421         


Q ss_pred             CCCeEEEEEe
Q 015319          398 MIPSGTQCYN  407 (409)
Q Consensus       398 ~~g~v~~~~~  407 (409)
                      ....++||..
T Consensus       276 ~~~~i~~i~~  285 (336)
T 1nhc_A          276 TGIPITDVTV  285 (336)
T ss_dssp             SSSCEEEEEE
T ss_pred             CCceEEEEEE
Confidence            2356777765

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=99.59  E-value=5.2e-14  Score=141.10  Aligned_cols=135  Identities=19%  Similarity=0.233  Sum_probs=113.4

Q ss_pred             eEEEEeeeeEEEeceEEecCC--------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319          264 ALRFYGSFNVTVTGITIQNSP--------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD  335 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~--------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD  335 (409)
                      .+.+. |+||+|++++|.++.        ..++++..|+||+|+|++|.+     .+|+|.+.+++||+|+||++..+. 
T Consensus       151 ~i~i~-~~nv~i~~~~I~~~~~d~~~~~NtDGidi~~s~nV~I~n~~i~~-----gDDcIaiksg~nI~i~n~~~~~gh-  223 (362)
T 1czf_A          151 AFSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHN-----QDDCLAVNSGENIWFTGGTCIGGH-  223 (362)
T ss_dssp             CEEEE-CSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEEC-----SSCSEEESSEEEEEEESCEEESSC-
T ss_pred             EEEEe-eCCEEEEEEEEECCccccccCCCCCceeecCcceEEEEeeEEec-----CCCEEEEeCCeEEEEEEEEEeCCc-
Confidence            47889 999999999999742        345999999999999999999     789999999999999999999874 


Q ss_pred             eEEeCC-------CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc-ceEEEEeec---------C
Q 015319          336 CVSIQT-------GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKTWQ---------V  397 (409)
Q Consensus       336 ~Iai~s-------g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~-~Gi~Ikt~~---------G  397 (409)
                      +|+|++       +.+||+|+||++.+ .+|+.|.+..  +..+.|+||+|+|++|.+.. ++|.|....         .
T Consensus       224 GisiGS~G~~~~~~v~nV~v~n~~~~~t~~GirIKt~~--g~~G~v~nI~~~ni~~~~v~~~~i~I~~~Y~~~~~~~~p~  301 (362)
T 1czf_A          224 GLSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTIS--GATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPT  301 (362)
T ss_dssp             CEEEEEECSSSCCEEEEEEEEEEEEEEEEEEEEEEEET--TCCEEEEEEEEEEEEEEEEEEEEEEEEEEEETTEECSCCC
T ss_pred             eeEEeeccccCCCCEEEEEEEeeEEECCceEEEEEEeC--CCCceEeeEEEEeEEEECcccccEEEEEecCCCCCCCCCC
Confidence            799966       27999999999998 5699998752  24578999999999999986 799997542         1


Q ss_pred             CCCeEEEEEe
Q 015319          398 MIPSGTQCYN  407 (409)
Q Consensus       398 ~~g~v~~~~~  407 (409)
                      ....++||..
T Consensus       302 ~~~~i~nI~~  311 (362)
T 1czf_A          302 NGVTIQDVKL  311 (362)
T ss_dssp             SSEEEEEEEE
T ss_pred             CCceEEEEEE
Confidence            2356777765

>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X*

Probab=99.58  E-value=8.4e-14  Score=146.69  Aligned_cols=200  Identities=12%  Similarity=0.140  Sum_probs=145.8

Q ss_pred             cE-EEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCC--------------C--ceeeEEEecccCeeee
Q 015319          142 SI-MVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGK--------------G--LLWWLDFTKLKGITIQ  204 (409)
Q Consensus       142 ~~-v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~--------------g--~~~~i~~~~~~nVtI~  204 (409)
                      -+ +++++| .++.+.+.|.+   ..+++|...|+|-....  .|..              .  ..+++.+.+++||.|+
T Consensus       265 vt~L~L~~G-A~l~g~i~~~~---~~nv~ItG~GtIDG~G~--~ww~~~~~~~~~~~~rp~~i~~~~~~~~~~c~NV~I~  338 (574)
T 1ogo_X          265 TYWVYLAPG-AYVKGAIEYFT---KQNFYATGHGILSGENY--VYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCV  338 (574)
T ss_dssp             CCEEEECTT-EEEESCEEECC---SSCEEEESSCEEECTTS--CTTCBTTTTTBSCCCTTTBCCSEEECSCCSSEEEEEE
T ss_pred             CceEEecCC-cEEEccEEEeC---ceeEEEEeCEEEeCCCc--ccccccccccccccCCcceEEEEeccccCCceeEEEE
Confidence            45 888888 77788888876   57999988898865421  1210              0  0112223489999999


Q ss_pred             eceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeE--EEeceEEec
Q 015319          205 GKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNV--TVTGITIQN  282 (409)
Q Consensus       205 G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv--~I~gvti~n  282 (409)
                      |-.+.+..   .|                                              .+++..|+||  +|+++++.+
T Consensus       339 Giti~NSp---~w----------------------------------------------~i~~~~c~nV~~~I~nv~i~~  369 (574)
T 1ogo_X          339 GPTINAPP---FN----------------------------------------------TMDFNGNSGISSQISDYKQVG  369 (574)
T ss_dssp             SCEEECCS---SC----------------------------------------------SEEECSSSCEEEEEEEEEEEC
T ss_pred             CeEEECCC---Cc----------------------------------------------EEeecCCCChhhEEEeeEeeC
Confidence            96666532   12                                              3667889999  999999987


Q ss_pred             CCCC---eEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC-e-EEeCC---CceeEEEEEEEEc
Q 015319          283 SPQC---HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD-C-VSIQT---GCSNVYVHNVNCG  354 (409)
Q Consensus       283 s~~~---~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD-~-Iai~s---g~~nV~I~n~~~~  354 (409)
                      ++.+   +|++.  +||+|+||+|.+     .+|+|.+.+ +||+|+||++.++.. + |++++   .++||+|+||++.
T Consensus       370 ~~~~nTDGIDi~--~NV~I~nc~I~~-----gDDcIaIks-~NI~I~nc~i~~g~g~g~IsIGS~~g~V~NV~v~N~~i~  441 (574)
T 1ogo_X          370 AFFFQTDGPEIY--PNSVVHDVFWHV-----NDDAIKIYY-SGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVI  441 (574)
T ss_dssp             CCSTTCCCCBCC--TTCEEEEEEEEE-----SSCSEECCS-TTCEEEEEEEEECSSSCSEECCSSCCCEEEEEEEEEEEE
T ss_pred             CCCCCCccCccc--CCEEEEeeEEEC-----CCCEEEECC-ccEEEEeEEEECCCCCceEEEcCCCCcEEEEEEEeEEEE
Confidence            6544   58887  999999999999     789999986 999999999998753 5 89985   4899999999997


Q ss_pred             CCC---------eeEEEecCCCC------CCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          355 PGH---------GISIGSLGKDN------TKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       355 ~g~---------GisIGs~g~~~------~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      +..         |..||++.-+.      .+..| ||+|+|++|.+..+++ |+.++  .+.++||+.+
T Consensus       442 ~~~~~~~~~~~~g~iiGs~~~y~~~~~~~~g~gV-NI~f~NI~~~~v~~~i-i~i~p--~~~I~nI~~~  506 (574)
T 1ogo_X          442 HTRYIKSETVVPSAIIGASPFYASGMSPDSRKSI-SMTVSNVVCEGLCPSL-FRITP--LQNYKNFVVK  506 (574)
T ss_dssp             ECCCSSCCTTTTCEEEEECCCSSSSCCCEEEEEE-EEEEEEEEECSSBCEE-EEECC--SEEEEEEEEE
T ss_pred             CCcccceeccccceeeccccccccccccCCCceE-EEEEEeEEEEceeEee-EEECC--CCCEEEEEEE
Confidence            643         44455543221      11128 9999999999998886 66554  3468887753

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=99.54  E-value=2.9e-13  Score=138.31  Aligned_cols=135  Identities=13%  Similarity=0.148  Sum_probs=114.0

Q ss_pred             eEEEEeeeeEEEeceEEecC---CCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecC-cccEEEEeeEEeeCCCeEEe
Q 015319          264 ALRFYGSFNVTVTGITIQNS---PQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN-SKDVLIHTSNLACGDDCVSI  339 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns---~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~-s~nV~I~n~~i~~gDD~Iai  339 (409)
                      .+.+..|+||+|++++|.+.   ...+|++.. ++|+|+||+|.+     .+|||.+.+ ++||+|+||++..+ .+|+|
T Consensus       152 ~i~i~~~~nv~I~n~~I~~~d~~ntDGidi~~-~nV~I~n~~i~~-----gDD~Iai~s~~~nI~I~n~~~~~~-~GisI  224 (422)
T 1rmg_A          152 HFTMDTCSDGEVYNMAIRGGNEGGLDGIDVWG-SNIWVHDVEVTN-----KDECVTVKSPANNILVESIYCNWS-GGCAM  224 (422)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSSTTCCSEEEEE-EEEEEEEEEEES-----SSEEEEEEEEEEEEEEEEEEEESS-SEEEE
T ss_pred             EEEEeCcCCEEEEeEEEECCCCCCCccEeecC-CeEEEEeeEEeC-----CCCeEEeCCCCcCEEEEeEEEcCC-cceee
Confidence            57889999999999999972   245699999 999999999998     689999987 99999999998877 49999


Q ss_pred             CC-----CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC-------CCCeEEEEE
Q 015319          340 QT-----GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV-------MIPSGTQCY  406 (409)
Q Consensus       340 ~s-----g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G-------~~g~v~~~~  406 (409)
                      ++     +.+||+|+||++.+ .+||.|.+.+   ..+.++||+|+|++|.+..++|.|..+.+       ....++||.
T Consensus       225 GS~g~~~~v~nV~v~n~~~~~~~~Gi~Ikt~~---g~G~v~nI~~~NI~~~~v~~~i~i~~~y~~~~~~~~~~~~i~nI~  301 (422)
T 1rmg_A          225 GSLGADTDVTDIVYRNVYTWSSNQMYMIKSNG---GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVAGDGVQLNNIT  301 (422)
T ss_dssp             EEECTTEEEEEEEEEEEEEESSSCSEEEEEBB---CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCCBSSSCCEEEEEE
T ss_pred             cccCCCCcEEEEEEEeEEEeccceEEEEEecC---CCcEEEEEEEEeEEEECccccEEEEeeccCCCcccCCCceEEEEE
Confidence            65     27999999999988 5799999753   23589999999999999999999986532       345777776


Q ss_pred             eC
Q 015319          407 NS  408 (409)
Q Consensus       407 ~~  408 (409)
                      .+
T Consensus       302 ~~  303 (422)
T 1rmg_A          302 VK  303 (422)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=99.53  E-value=2.7e-13  Score=134.49  Aligned_cols=136  Identities=18%  Similarity=0.196  Sum_probs=114.4

Q ss_pred             eEEEEeeee-EEEeceEEecCC---------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC
Q 015319          264 ALRFYGSFN-VTVTGITIQNSP---------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG  333 (409)
Q Consensus       264 ~i~~~~~~n-v~I~gvti~ns~---------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g  333 (409)
                      .+.+..|+| |+|++++|.++.         ..++++ .|+||+|+||+|.+     .+|+|.+.+++||+|+||++..+
T Consensus       121 ~i~i~~~~n~v~i~~v~I~~~~~d~~~~~~NtDGidi-~s~nV~I~n~~i~~-----gDDcIaiksg~nI~i~n~~~~~g  194 (335)
T 1k5c_A          121 AISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKN-----QDDCIAINDGNNIRFENNQCSGG  194 (335)
T ss_dssp             CEEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEES-----SSCSEEEEEEEEEEEESCEEESS
T ss_pred             eEEEEccCCeEEEEEEEEECCCCcccccCCCCCeEcc-cCCeEEEEeeEEEc-----CCCEEEeeCCeeEEEEEEEEECC
Confidence            588999999 999999999852         235999 99999999999999     78999999999999999999987


Q ss_pred             CCeEEeCC-----CceeEEEEEEEEcC-CCeeEEEecCCCCCC-CcEEEEEEEeEEEeccc-ceEEEEeecC-------C
Q 015319          334 DDCVSIQT-----GCSNVYVHNVNCGP-GHGISIGSLGKDNTK-ACVSNITVRDVMMHNTM-NGVRIKTWQV-------M  398 (409)
Q Consensus       334 DD~Iai~s-----g~~nV~I~n~~~~~-g~GisIGs~g~~~~~-~~v~nI~v~n~~~~~~~-~Gi~Ikt~~G-------~  398 (409)
                       .+|+|++     +.+||+|+||++.+ ..|+.|.+..  +.. +.|+||+|+|++|.+.. ++|.|....+       .
T Consensus       195 -hGisIGS~g~~~~v~nV~v~n~~~~~t~~girIKt~~--g~~~G~v~nI~f~ni~~~~v~~~~i~i~~~Y~~~~~~p~~  271 (335)
T 1k5c_A          195 -HGISIGSIATGKHVSNVVIKGNTVTRSMYGVRIKAQR--TATSASVSGVTYDANTISGIAKYGVLISQSYPDDVGNPGT  271 (335)
T ss_dssp             -CCEEEEEECTTCEEEEEEEESCEEEEEEEEEEEEEET--TCCSCEEEEEEEESCEEEEEEEEEEEEEEEETSSSSSCCS
T ss_pred             -ccCeEeeccCCCCEEEEEEEeeEEECCCceEEEEEeC--CCCcceEeeeEEEEEEEEccccccEEEEeeCCCCCCCCCC
Confidence             4698864     37999999999998 5699999763  234 67999999999999986 7999987432       2


Q ss_pred             CCeEEEEEeC
Q 015319          399 IPSGTQCYNS  408 (409)
Q Consensus       399 ~g~v~~~~~~  408 (409)
                      ...++||..+
T Consensus       272 ~~~i~nI~~~  281 (335)
T 1k5c_A          272 GAPFSDVNFT  281 (335)
T ss_dssp             SSCEEEEEEC
T ss_pred             CceEEEEEEE
Confidence            3578888764

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=99.52  E-value=9.6e-14  Score=139.11  Aligned_cols=206  Identities=14%  Similarity=0.160  Sum_probs=122.2

Q ss_pred             CCCceEEEeec----cccCCCCCccHHHHHHHHHHHhh-------cCCcEEEECCceEEE-eCCcccCCCccccceEEEe
Q 015319          105 HHSSVFNVKDF----GAKGNGVSDDTKAFEAAWAAACK-------VEASIMVVPAESVFL-VGPMSFSGPYCQANIIFQL  172 (409)
Q Consensus       105 ~~~~~~~V~d~----GA~gdg~tDdT~Aiq~Ai~~a~~-------~gg~~v~vP~G~~y~-~~~i~l~g~~~~s~~~l~l  172 (409)
                      +....|+|++|    +|+||+.+|+.++|+++|+++.+       ..|.+|+||+| +|. -+++.+.    ++.++|..
T Consensus        10 ~~~~~~~vt~~~~~~~~~~~~~~d~~~~i~~~ia~~~~~~~~~~A~pGdvI~L~~G-~Y~l~g~ivId----kp~LtL~G   84 (410)
T 2inu_A           10 NSPNTYDVTTWRIKAHPEVTAQSDIGAVINDIIADIKQRQTSPDARPGAAIIIPPG-DYDLHTQVVVD----VSYLTIAG   84 (410)
T ss_dssp             --CCEEETTTCCBTTBTTCCHHHHHHHHHHHHHHHHHHHCCCTTSCCCEEEECCSE-EEEECSCEEEC----CTTEEEEC
T ss_pred             ccCceEEEEEecccCCCcCCCchhHHHHHHHHHHHhhcccccccCCCCCEEEECCC-eeccCCcEEEe----cCcEEEEe
Confidence            35679999999    89999999999999999999886       45899999999 665 5888874    45578877


Q ss_pred             cc--e----EEcCCCCcc----cCCCce----------eeEEEec-----ccCeeeeeceEEeCCCcccccCCCCCCCCC
Q 015319          173 DG--T----IIAPTGSKD----WGKGLL----------WWLDFTK-----LKGITIQGKGIIDGRGSVWWQDYPYDDPID  227 (409)
Q Consensus       173 ~G--t----l~~~~~~~~----~~~g~~----------~~i~~~~-----~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~  227 (409)
                      ++  .    |..-.....    |+++..          .-|.++.     +++|+|.| =+|+|---.-|..        
T Consensus        85 ~~~g~~s~~Id~~~~~~g~~~~~g~Gs~I~V~a~~~~g~a~~V~~~g~~r~s~V~~~~-v~I~G~~~~~~G~--------  155 (410)
T 2inu_A           85 FGHGFFSRSILDNSNPTGWQNLQPGASHIRVLTSPSAPQAFLVKRAGDPRLSGIVFRD-FCLDGVGFTPGKN--------  155 (410)
T ss_dssp             SCCCCCCHHHHHTSCCTTCSCCSCCSEEEEECCCTTSCEEEEECCCSSSCEECCEEES-CEEECCCCSSSTT--------
T ss_pred             cCCCcceeEEecccccCcccccCCCCcEEEEeccccccceeEEeeccCcccCCcEECC-EEEECCEeecCCC--------
Confidence            53  2    331101112    333321          1122211     25566555 3444441100100        


Q ss_pred             ccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEe-eeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCC
Q 015319          228 DESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYG-SFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSP  306 (409)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~-~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~  306 (409)
                                                   .....-.+|.+.. +++++|+++.|.+. .++|.+..+++.+|+++.|...
T Consensus       156 -----------------------------s~~~~dAGI~v~~~~d~~~I~nn~i~~~-~fGI~l~~a~~~~I~~N~I~e~  205 (410)
T 2inu_A          156 -----------------------------SYHNGKTGIEVASDNDSFHITGMGFVYL-EHALIVRGADALRVNDNMIAEC  205 (410)
T ss_dssp             -----------------------------SCCCSCEEEEECSCEESCEEESCEEESC-SEEEEETTEESCEEESCEEESS
T ss_pred             -----------------------------CcccCceeEEEeccCCeEEEECCEEecc-cEEEEEccCCCcEEECCEEEec
Confidence                                         0001234666654 77788888888875 7788888888888888888741


Q ss_pred             C------------------CCCCCCc--eeecCcccEEEEeeEE-eeCCCeEEeCCCceeEEEEEEEEcC
Q 015319          307 G------------------DSPNTDG--IHLQNSKDVLIHTSNL-ACGDDCVSIQTGCSNVYVHNVNCGP  355 (409)
Q Consensus       307 ~------------------~~~n~DG--I~l~~s~nV~I~n~~i-~~gDD~Iai~sg~~nV~I~n~~~~~  355 (409)
                      +                  .....||  |.++.+.+.+|+++.+ ..+.|+|.+.. +.+..|+++.+..
T Consensus       206 GNgI~L~G~~~~~~I~~N~i~~~~dG~gIyl~ns~~~~I~~N~i~~~~R~gIh~m~-s~~~~i~~N~f~~  274 (410)
T 2inu_A          206 GNCVELTGAGQATIVSGNHMGAGPDGVTLLAENHEGLLVTGNNLFPRGRSLIEFTG-CNRCSVTSNRLQG  274 (410)
T ss_dssp             SEEEEECSCEESCEEESCEEECCTTSEEEEEESEESCEEESCEECSCSSEEEEEES-CBSCEEESCEEEE
T ss_pred             CCceeeccccccceEecceeeecCCCCEEEEEeCCCCEEECCCcccCcceEEEEEc-cCCCEEECCEEec
Confidence            0                  0112233  5555555555555544 33555555544 3444555555554

>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A*

Probab=99.52  E-value=6.4e-13  Score=139.70  Aligned_cols=207  Identities=14%  Similarity=0.120  Sum_probs=144.4

Q ss_pred             CcE-EEECCceEEEeCCcccC-CCccccceEEEecceEEcCCCC------cccCC-------C--ceeeEEEecccCeee
Q 015319          141 ASI-MVVPAESVFLVGPMSFS-GPYCQANIIFQLDGTIIAPTGS------KDWGK-------G--LLWWLDFTKLKGITI  203 (409)
Q Consensus       141 g~~-v~vP~G~~y~~~~i~l~-g~~~~s~~~l~l~Gtl~~~~~~------~~~~~-------g--~~~~i~~~~~~nVtI  203 (409)
                      +.+ +++++| .++.+++.|. +   ..+++|...|+|-.....      ..|..       .  +.+++.+.+++||.|
T Consensus       222 ~~~~L~l~~G-A~L~gs~~~~~~---~~nv~ItG~GtIDG~G~~ww~~~~~~~~~~~~~rp~~i~~~~~~~~~~c~nV~I  297 (549)
T 1x0c_A          222 SVTWVYFAPG-AYVKGAVEFLST---ASEVKASGHGVLSGEQYVWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVL  297 (549)
T ss_dssp             TCCEEEECTT-EEEESCEEECCC---SSEEEEESSCEEECTTSCTTEEGGGTTEECGGGCSCCCCSEEEECCSSCEEEEE
T ss_pred             CCCeEecCCC-CEEEEEEEEecC---ceeEEEEeeEEEECCCceecccCcccccccccCCCceEEEeeccccCCceEEEE
Confidence            456 999999 7888888776 3   468899888898765421      11210       0  011223388899999


Q ss_pred             eeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEE-ee-ee--EEEeceE
Q 015319          204 QGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFY-GS-FN--VTVTGIT  279 (409)
Q Consensus       204 ~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~-~~-~n--v~I~gvt  279 (409)
                      +|-.+.+..   +|                                              .+++. .| +|  ++|++++
T Consensus       298 ~Giti~Nsp---~w----------------------------------------------~i~i~~~~~~ni~V~I~n~~  328 (549)
T 1x0c_A          298 NGVTVSAPP---FN----------------------------------------------SMDWSGNSLDLITCRVDDYK  328 (549)
T ss_dssp             ESCEEECCS---SC----------------------------------------------SEEEECSCGGGEEEEEEEEE
T ss_pred             ECcEEECCC---ce----------------------------------------------eEEeeccCCCCCeEEEEeeE
Confidence            985544432   22                                              24444 34 58  9999999


Q ss_pred             EecCCCC---eEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCC-Ce-EEeCC---CceeEEEEEE
Q 015319          280 IQNSPQC---HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGD-DC-VSIQT---GCSNVYVHNV  351 (409)
Q Consensus       280 i~ns~~~---~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gD-D~-Iai~s---g~~nV~I~n~  351 (409)
                      +.++..|   ++++.  +||+|+||+|.+     .+|+|.+.+ +||+|+||++.++. .+ |++++   .++||+|+||
T Consensus       329 i~~~~~~NTDGidi~--~nV~I~n~~i~~-----gDDcIaIks-~NI~I~n~~~~~~~g~~~IsiGs~~~~V~NV~v~n~  400 (549)
T 1x0c_A          329 QVGAFYGQTDGLEMY--PGTILQDVFYHT-----DDDGLKMYY-SNVTARNIVMWKESVAPVVEFGWTPRNTENVLFDNV  400 (549)
T ss_dssp             EECCCBTTCCCCBCC--TTCEEEEEEEEE-----SSCCEECCS-SSEEEEEEEEEECSSSCSEECCBSCCCEEEEEEEEE
T ss_pred             eEcCCCCCCCccccc--CCEEEEeeEEeC-----CCCEEEECC-CCEEEEeeEEEcCCCCceEEECCCCCcEEEEEEEee
Confidence            9875433   57777  999999999999     789999987 99999999998764 45 88875   4899999999


Q ss_pred             EEcCCC-------eeEEEecCCC---------CCCCcEEEEEEEeEEEeccc-ceEEEEeecCCCC-eEEEEEeC
Q 015319          352 NCGPGH-------GISIGSLGKD---------NTKACVSNITVRDVMMHNTM-NGVRIKTWQVMIP-SGTQCYNS  408 (409)
Q Consensus       352 ~~~~g~-------GisIGs~g~~---------~~~~~v~nI~v~n~~~~~~~-~Gi~Ikt~~G~~g-~v~~~~~~  408 (409)
                      ++.+..       |.-|.+...+         ...+.|+||+|+|++|++.. +|+.+....|..+ .++||+.+
T Consensus       401 ~i~~s~~~k~~~~g~iI~~~~~~~~g~~~~~~d~~G~i~nI~f~NI~i~nv~~~g~~~~~~~g~pg~~I~nI~i~  475 (549)
T 1x0c_A          401 DVIHQAYANAGNNPGIFGAVNNYLYAPDGLSSNHSTGNSNMTVRNITWSNFRAEGSSSALFRINPIQNLDNISIK  475 (549)
T ss_dssp             EEEECCCCSGGGCCCSEEECCBTTTCTTSCCSCCCCBEEEEEEEEEEEEEEEEEEEECCSEEECCSEEEEEEEEE
T ss_pred             EEECccccccccceEEEecccccccCccccCcCCCceEccEEEEeEEEEeEEEeceEEeeecCCCCCcCccEEEE
Confidence            998743       4225542111         12567999999999999876 6665533334333 58888764

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=99.05  E-value=3.2e-09  Score=113.53  Aligned_cols=68  Identities=25%  Similarity=0.377  Sum_probs=56.6

Q ss_pred             CCCCceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEe-CCcccCCCccccceEEEecc--eEEcC
Q 015319          104 SHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLV-GPMSFSGPYCQANIIFQLDG--TIIAP  179 (409)
Q Consensus       104 ~~~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~-~~i~l~g~~~~s~~~l~l~G--tl~~~  179 (409)
                      .+...+++|+||||+|||++|||+|||+||++|  .++.+||||+| +|++ ++|.+     .++++|..++  +|.+.
T Consensus       395 ~~~~~~vnVkd~GA~GDG~tDDT~Ai~~al~aa--~~g~~v~~P~G-~Y~vt~Ti~i-----p~~~~ivG~~~~~I~~~  465 (758)
T 3eqn_A          395 YAPSDFVSVRSQGAKGDGHTDDTQAIKNVFAKY--AGCKIIFFDAG-TYIVTDTIQI-----PAGTQIVGEVWSVIMGT  465 (758)
T ss_dssp             CCGGGEEETTTTTCCCEEEEECHHHHHHHHHHH--TTTSEEECCSE-EEEESSCEEE-----CTTCEEECCSSEEEEEC
T ss_pred             ccccceEEeeeccccCCCCchhHHHHHHHHHHh--cCCCEEEECCC-EeEECCeEEc-----CCCCEEEecccceEecC
Confidence            356689999999999999999999999999854  35899999999 5665 67888     5799998875  66653

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=99.00  E-value=5.2e-09  Score=110.10  Aligned_cols=93  Identities=18%  Similarity=0.207  Sum_probs=66.8

Q ss_pred             CccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC-----CCeEEeCCCceeEEEEEEEEcCC-CeeEEEecCC
Q 015319          293 CIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG-----DDCVSIQTGCSNVYVHNVNCGPG-HGISIGSLGK  366 (409)
Q Consensus       293 ~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g-----DD~Iai~sg~~nV~I~n~~~~~g-~GisIGs~g~  366 (409)
                      |+||+|+||+|+.    ..+|||.+.+|+||+|+||++...     ..+|.|+++.+||+|+||++.+. .||.|...+ 
T Consensus       182 S~NV~I~Nc~I~~----tGDDcIaIksseNI~I~Nc~~~gp~G~S~~~GIsIGsgs~NVtV~Nc~i~nt~~GIrIKt~~-  256 (609)
T 3gq8_A          182 SENIWIENCEATG----FGDDGITTHHSQYINILNCYSHDPRLTANCNGFEIDDGSRHVVLSNNRSKGCYGGIEIKAHG-  256 (609)
T ss_dssp             CEEEEEESCEEES----CSSCSEEECSCEEEEEESCEEECCSSCSSCCSEEECTTCEEEEEESEEEESSSEEEEEEECT-
T ss_pred             ceeEEEEeeEEEe----cCCCEEEecCCeeEEEEeEEEECCCCCCCcccEEccCCcccEEEEeeEEECCCCEEEEEecC-
Confidence            8888888888865    367888888888888888888432     46788887778888888888874 578887653 


Q ss_pred             CCCCCcEEEEEEEeEEEeccc--ceEEE
Q 015319          367 DNTKACVSNITVRDVMMHNTM--NGVRI  392 (409)
Q Consensus       367 ~~~~~~v~nI~v~n~~~~~~~--~Gi~I  392 (409)
                        +...++||+|.|+...+..  +.+++
T Consensus       257 --~~~~v~NV~I~n~vs~~nvrsyn~r~  282 (609)
T 3gq8_A          257 --DAPAAYNISINGHMSVEDVRSYNFRH  282 (609)
T ss_dssp             --TSCCCEEEEEEEEEEESCSEEEEEEE
T ss_pred             --CCCccccEEEECCEeecCceEecceE
Confidence              3456788888887555443  34444

>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A

Probab=98.91  E-value=5.8e-08  Score=100.00  Aligned_cols=96  Identities=14%  Similarity=0.209  Sum_probs=80.1

Q ss_pred             EEeecCccEEEEeEEEeCCCCCCCCCc-eeecCcccEEEEeeEEeeCCCeEEeCCC-----------ceeEEEEEEEEcC
Q 015319          288 LKFDNCIGVVVHDVSVSSPGDSPNTDG-IHLQNSKDVLIHTSNLACGDDCVSIQTG-----------CSNVYVHNVNCGP  355 (409)
Q Consensus       288 i~~~~~~nV~I~n~~I~s~~~~~n~DG-I~l~~s~nV~I~n~~i~~gDD~Iai~sg-----------~~nV~I~n~~~~~  355 (409)
                      +++ .|++|+|+|++|.++   .+++| ++...++||+|+||++.. +++|.++++           ++||+|+||++.+
T Consensus       170 i~i-~s~nV~I~n~~I~~g---ddgiGs~~~~~~~NV~V~n~~~~g-g~GIrIktg~d~IG~~~~g~v~NI~~~Ni~~~n  244 (464)
T 1h80_A          170 RLH-WSRNGIIERIKQNNA---LFGYGLIQTYGADNILFRNLHSEG-GIALRMETDNLLMKNYKQGGIRNIFADNIRCSK  244 (464)
T ss_dssp             EEE-EEEEEEEEEEEEESC---CTTCEEEEESEEEEEEEEEEEEES-SEEEEEECCCHHHHHHTCCEEEEEEEEEEEEES
T ss_pred             cee-eccCEEEeceEEecC---CCeEEecccCCEeEEEEEeeEEEC-CCEEEEEeCCceeccCCCCcEEEEEEEeEEEEC
Confidence            444 899999999999995   35667 677889999999999877 667777654           7999999999998


Q ss_pred             C-CeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEE
Q 015319          356 G-HGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIK  393 (409)
Q Consensus       356 g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ik  393 (409)
                      . .+|.|++.     ...++||+|+|+++.+...+|.|.
T Consensus       245 v~~~I~I~p~-----~~~isnItfeNI~~t~~~~aI~i~  278 (464)
T 1h80_A          245 GLAAVMFGPH-----FMKNGDVQVTNVSSVSCGSAVRSD  278 (464)
T ss_dssp             SSEEEEEECT-----TCBCCCEEEEEEEEESSSCSEEEC
T ss_pred             CceeEEEeCC-----CceEeEEEEEEEEEEccceeEEEe
Confidence            4 57999864     246899999999999999999886

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=98.90  E-value=6.4e-08  Score=98.05  Aligned_cols=90  Identities=13%  Similarity=0.036  Sum_probs=66.9

Q ss_pred             eEEEEeeeeEEEeceEEecCCCCeEEeecCc-cEEEEeEEEeCCCC----CCCCCceeecCc--ccEEEEeeEEe-eCCC
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCI-GVVVHDVSVSSPGD----SPNTDGIHLQNS--KDVLIHTSNLA-CGDD  335 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~-nV~I~n~~I~s~~~----~~n~DGI~l~~s--~nV~I~n~~i~-~gDD  335 (409)
                      +|.+.+ .+.+|++++|.+....+|.+.... +.+|++|+|....+    ..+.|||.+..+  .+.+|++|++. +.||
T Consensus       131 GI~v~g-s~~~i~n~~i~~n~~~GI~l~~~~s~n~I~nn~i~~N~d~~~~g~~~dG~~~~~~~g~Gn~~~~~~~~~N~dd  209 (400)
T 1ru4_A          131 GAYVIG-SHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDD  209 (400)
T ss_dssp             SEEECS-SSCEEESCEEESCSSCSEEECTTCCSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSC
T ss_pred             cEEEeC-CCcEEEeEEEECCCceeEEEEcccCCeEEEceEEEcccCccccCcccceEEEEecccCCeEEECCEEeecCCC
Confidence            455555 677899999998877678887644 88888999887543    246789887543  78888888875 4688


Q ss_pred             eEEeCCCceeEEEEEEEEc
Q 015319          336 CVSIQTGCSNVYVHNVNCG  354 (409)
Q Consensus       336 ~Iai~sg~~nV~I~n~~~~  354 (409)
                      ++.+......|+|+||...
T Consensus       210 Gidl~~~~~~v~i~nn~a~  228 (400)
T 1ru4_A          210 GFDLFDSPQKVVIENSWAF  228 (400)
T ss_dssp             SEECTTCCSCCEEESCEEE
T ss_pred             cEEEEecCCCEEEEeEEEE
Confidence            8888765567888888774

>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A*

Probab=98.47  E-value=1.9e-06  Score=85.79  Aligned_cols=122  Identities=9%  Similarity=0.109  Sum_probs=97.4

Q ss_pred             eeEEEEeeeeEEEeceEEecCCCCeEEeec-CccEEEEeEEEeCCCCCCCCCceee--------cCcccEEEEeeEEee-
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQCHLKFDN-CIGVVVHDVSVSSPGDSPNTDGIHL--------QNSKDVLIHTSNLAC-  332 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~~-~~nV~I~n~~I~s~~~~~n~DGI~l--------~~s~nV~I~n~~i~~-  332 (409)
                      ..|.+..|.+.+|++.++.+....+|++.. |++++|+++++..     +.||+.+        ..+++++|+++.+.. 
T Consensus       173 dGI~~~~s~~~~i~~N~~~~~~~~GI~~~~~s~~v~I~nN~i~~-----~~~g~~~~~~g~~~~~~s~nv~i~~N~~~~n  247 (377)
T 2pyg_A          173 DGFVADYLVDSVFENNVAYANDRHGFNVVTSTHDFVMTNNVAYG-----NGSSGLVVQRGLEDLALPSNILIDGGAYYDN  247 (377)
T ss_dssp             CSEEEESEEEEEEESCEEESCSSCSEEEETTCEEEEEESCEEES-----CSSCSEEEECCSSCCCCCEEEEEESCEEESC
T ss_pred             CceeEeccCCcEEECcEEEccccCcEEEEeccCCeEEECCEEEC-----ccCceEEEeccccCCCCCccEEEECCEEEcC
Confidence            467788999999999877777788899887 9999999999998     6788887        678899999998764 


Q ss_pred             CCCeEEeCCCceeEEEEEEEEcC--CCeeEEEecCCCCCCCcEEEEEEEeEEEecccc-----eEEEEeecCCC
Q 015319          333 GDDCVSIQTGCSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNITVRDVMMHNTMN-----GVRIKTWQVMI  399 (409)
Q Consensus       333 gDD~Iai~sg~~nV~I~n~~~~~--g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~-----Gi~Ikt~~G~~  399 (409)
                      ...++.+.. +++++|+||++..  ..||.|..         +++++|+|++|.++..     .+.+..+.+..
T Consensus       248 ~~~Gi~~~~-~~~v~i~~N~i~~~~~~GI~i~g---------~~~~~i~~N~i~~n~~~~~~~~v~~~~~~~~~  311 (377)
T 2pyg_A          248 AREGVLLKM-TSDITLQNADIHGNGSSGVRVYG---------AQDVQILDNQIHDNAQAAAVPEVLLQSFDDTA  311 (377)
T ss_dssp             SSCSEEEEE-EEEEEEESCEEESCSSCSEEEEE---------EEEEEEESCEEESCCSSSSCCSEEEECEEETT
T ss_pred             ccCceEecc-ccCeEEECCEEECCCCceEEEec---------CCCcEEECcEEECCcccccccceEEEEecCCC
Confidence            456787776 7999999999987  46888863         6899999999997643     45555555443

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5

Probab=98.42  E-value=5.7e-06  Score=81.23  Aligned_cols=107  Identities=11%  Similarity=0.128  Sum_probs=73.3

Q ss_pred             eeeeEEEeceEEecCCC------CeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCC
Q 015319          269 GSFNVTVTGITIQNSPQ------CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG  342 (409)
Q Consensus       269 ~~~nv~I~gvti~ns~~------~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg  342 (409)
                      .+++++++||+|+|+..      -++.+ .++++.++||.|..     ..|++.....++ .+++|+|...-|-|. +. 
T Consensus        92 ~a~~f~~~nlt~~Nt~g~~~~qAvAl~v-~~d~~~f~~c~f~g-----~QDTLy~~~~r~-~~~~c~I~G~vDFIf-G~-  162 (319)
T 1gq8_A           92 VGAGFLARDITFQNTAGAAKHQAVALRV-GSDLSAFYRCDILA-----YQDSLYVHSNRQ-FFINCFIAGTVDFIF-GN-  162 (319)
T ss_dssp             CSTTCEEEEEEEEECCCGGGCCCCSEEE-CCTTEEEEEEEEEC-----STTCEEECSSEE-EEESCEEEESSSCEE-ES-
T ss_pred             ECCCEEEEEeEeEccCCCcCCceEEEEe-cCCcEEEEEeEECc-----cceeeeecCccE-EEEecEEEeeeeEEe-cC-
Confidence            57899999999998742      22554 68999999999998     788888887664 889999987766664 33 


Q ss_pred             ceeEEEEEEEEcC-C----CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          343 CSNVYVHNVNCGP-G----HGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       343 ~~nV~I~n~~~~~-g----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                       -...|+||++.. .    ..-.|--.++. ....-.-+.|.||+|...
T Consensus       163 -~~a~f~~c~i~~~~~~~~~~~~itA~~r~-~~~~~~G~vf~~c~i~~~  209 (319)
T 1gq8_A          163 -AAVVLQDCDIHARRPGSGQKNMVTAQGRT-DPNQNTGIVIQKSRIGAT  209 (319)
T ss_dssp             -CEEEEESCEEEECCCSTTCCEEEEEECCC-STTCCCEEEEESCEEEEC
T ss_pred             -CcEEEEeeEEEEecCCCCCceEEEeCCCC-CCCCCceEEEECCEEecC
Confidence             347888888764 1    11223222211 123345678888888754

>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A*

Probab=98.41  E-value=7.5e-07  Score=93.43  Aligned_cols=120  Identities=15%  Similarity=0.031  Sum_probs=82.1

Q ss_pred             eEEE---EeeeeEEEeceE----EecCC-CCeEEeecCccEEEEeEEEeCCCCCCCCCceee-cCcc--cEEEEeeEEee
Q 015319          264 ALRF---YGSFNVTVTGIT----IQNSP-QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHL-QNSK--DVLIHTSNLAC  332 (409)
Q Consensus       264 ~i~~---~~~~nv~I~gvt----i~ns~-~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l-~~s~--nV~I~n~~i~~  332 (409)
                      .+++   ..|+||+|++++    |.+++ ..+|       |+|+||+|.+     .+|+|.+ .+.+  ++.++  .+..
T Consensus       200 ~I~iG~~~~c~NVtI~nvtfi~aI~sspNTDGI-------V~I~nc~I~t-----GDDCIAI~KSGs~~ni~~e--~~~~  265 (600)
T 2x6w_A          200 AITLGWNGYGSNCYVRKCRFINLVNSSVNADHS-------TVYVNCPYSG-----VESCYFSMSSSFARNIACS--VQLH  265 (600)
T ss_dssp             SEEECBTTBEEEEEEESCEEECCCCCSSCCCEE-------EEEECSSSEE-----EESCEEECCCTTHHHHEEE--EEEC
T ss_pred             EEEeCCCCCcccEEEeCeEEcceEecCCCCCEE-------EEEEeeEEec-----CCcEEEEecCCCcCCeEEE--EEcC
Confidence            5778   899999999999    76632 1223       8999999988     6889999 6543  45666  4445


Q ss_pred             CCCeEEeCC----------------------C-ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEeccc-
Q 015319          333 GDDCVSIQT----------------------G-CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTM-  387 (409)
Q Consensus       333 gDD~Iai~s----------------------g-~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~-  387 (409)
                      +..+|+|++                      | .+||+|+|+++.+ ...|.|...........|+||+|+|++..... 
T Consensus       266 GHgGISIGSe~~ggV~NV~V~NrIKt~~G~GG~V~NItfeNI~m~nV~~~I~i~q~~~~~s~~~IsnItfkNItgTsas~  345 (600)
T 2x6w_A          266 QHDTFYRGSTVNGYCRGAYVVMHAAEAAGAGSYAYNMQVENNIAVIYGQFVILGSDVTATVSGHLNDVIVSGNIVSIGER  345 (600)
T ss_dssp             SSSEEEESCEEEEESEEEEEEECGGGCTTTCSEEEEEEEESCEEEESSEEEEEEECBCSSCBCEEEEEEEESCEEEECSC
T ss_pred             CCCcEEecccccCcEEEEEEEEEEEeecCCCceEEEEEEEEEEEEccceEEEeCCCCCCCCCceEEEEEEEeEEEEeccc
Confidence            555777765                      1 5777777777776 45677765322224457999999999988532 


Q ss_pred             ------ceEEEEeecC
Q 015319          388 ------NGVRIKTWQV  397 (409)
Q Consensus       388 ------~Gi~Ikt~~G  397 (409)
                            .|..|-.-++
T Consensus       346 aav~~~~g~~i~g~p~  361 (600)
T 2x6w_A          346 AAFSAPFGAFIDIGPD  361 (600)
T ss_dssp             CTTSSSCEEEEEECCC
T ss_pred             cccccccceEEEecCc
Confidence                  3456665544

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}

Probab=98.38  E-value=6.7e-06  Score=80.65  Aligned_cols=107  Identities=10%  Similarity=0.121  Sum_probs=71.8

Q ss_pred             eeeeEEEeceEEecCCC------CeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCC
Q 015319          269 GSFNVTVTGITIQNSPQ------CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG  342 (409)
Q Consensus       269 ~~~nv~I~gvti~ns~~------~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg  342 (409)
                      .+++++++||+|+|+..      -++.+ .++++.++||.|..     ..|++.....++ .+++|+|...-|-|. +. 
T Consensus        88 ~a~~f~~~~lt~~Nt~g~~~~qAvAl~v-~~d~~~f~~c~f~g-----~QDTLy~~~~r~-~~~~c~I~G~vDFIf-G~-  158 (317)
T 1xg2_A           88 VGQGFILQDICIQNTAGPAKDQAVALRV-GADMSVINRCRIDA-----YQDTLYAHSQRQ-FYRDSYVTGTVDFIF-GN-  158 (317)
T ss_dssp             CSTTCEEESCEEEECCCGGGCCCCSEEE-CCTTEEEESCEEEC-----STTCEEECSSEE-EEESCEEEESSSCEE-EC-
T ss_pred             ECCCEEEEEeEEecccCCccCceEEEEE-eCCcEEEEEeEeCc-----cccceeecCccE-EEEeeEEEeceeEEc-CC-
Confidence            67899999999998742      22544 68889999999998     788888877665 889999987666554 33 


Q ss_pred             ceeEEEEEEEEcC-C----CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          343 CSNVYVHNVNCGP-G----HGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       343 ~~nV~I~n~~~~~-g----~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                       -...|+||++.. .    ..-.|-..++. ....-.-..|.||+|...
T Consensus       159 -~~avf~~c~i~~~~~~~~~~~~itA~~r~-~~~~~~G~vf~~c~i~~~  205 (317)
T 1xg2_A          159 -AAVVFQKCQLVARKPGKYQQNMVTAQGRT-DPNQATGTSIQFCNIIAS  205 (317)
T ss_dssp             -CEEEEESCEEEECCCSTTCCEEEEEECCC-CTTSCCEEEEESCEEEEC
T ss_pred             -ceEEEeeeEEEEeccCCCCccEEEecCcC-CCCCCcEEEEECCEEecC
Confidence             347888887764 1    11222222211 122345677888888754

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=98.38  E-value=4.6e-06  Score=86.67  Aligned_cols=86  Identities=5%  Similarity=-0.133  Sum_probs=50.4

Q ss_pred             eeeEEEeceEEecCCCCe-EEee--------cCccEEEEeEEEeCCCCCCCCC----ceeecC-------cccEEEEeeE
Q 015319          270 SFNVTVTGITIQNSPQCH-LKFD--------NCIGVVVHDVSVSSPGDSPNTD----GIHLQN-------SKDVLIHTSN  329 (409)
Q Consensus       270 ~~nv~I~gvti~ns~~~~-i~~~--------~~~nV~I~n~~I~s~~~~~n~D----GI~l~~-------s~nV~I~n~~  329 (409)
                      .++++|+++.|.+...-. +.+.        ..++.+|++|+|..........    ||++..       +.+.+|++|+
T Consensus       125 G~~~~I~nn~I~~~~~gd~i~i~~~~~~~~l~g~~n~I~~N~I~Gk~~~G~~i~gnngI~l~~~~~~~~~~~~~~I~nN~  204 (506)
T 1dbg_A          125 GSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPGMYHRVDHCF  204 (506)
T ss_dssp             SSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSCSEEECSSCCCSCCCSCCCCCCCCEEESCE
T ss_pred             cCCeEEEeeEEEcCCCCceeeEeecccceeeeccccEEECcEEECCcCcceEEecCceeEeccCcccccccCCeEEeCcE
Confidence            367778888887764320 2222        4566678888887643222222    777764       3577888887


Q ss_pred             Eee------CCCeEEeCCC---ceeEEEEEEEEcC
Q 015319          330 LAC------GDDCVSIQTG---CSNVYVHNVNCGP  355 (409)
Q Consensus       330 i~~------gDD~Iai~sg---~~nV~I~n~~~~~  355 (409)
                      |..      +-+.+.++..   .++.+|+|+.|..
T Consensus       205 f~~~~~~~N~~e~iR~G~h~m~s~~~~VenN~f~~  239 (506)
T 1dbg_A          205 FSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMR  239 (506)
T ss_dssp             EEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEE
T ss_pred             EcccccCCCccccEEEEEEecccCCcEEECCEEEe
Confidence            764      2344555421   3566666666665

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=98.35  E-value=5.7e-06  Score=81.38  Aligned_cols=119  Identities=10%  Similarity=0.135  Sum_probs=73.7

Q ss_pred             eEEEEeeeeEEEeceEEecCC---CCeEEeec-CccEEEEeEEEeCCC----CCCCCCce-ee-cCcccEEEEeeEEeeC
Q 015319          264 ALRFYGSFNVTVTGITIQNSP---QCHLKFDN-CIGVVVHDVSVSSPG----DSPNTDGI-HL-QNSKDVLIHTSNLACG  333 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~---~~~i~~~~-~~nV~I~n~~I~s~~----~~~n~DGI-~l-~~s~nV~I~n~~i~~g  333 (409)
                      .|++..++||.|++++|.+..   ..+|.+.. +++|.|++|++....    +....||. ++ ..+.+|||.+|.|...
T Consensus        96 gl~i~~a~NVIIrNl~i~~~~~~~~DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl~di~~~s~~VTISnn~f~~h  175 (326)
T 3vmv_A           96 GIRLSNAHNIIIQNVSIHHVREGEGTAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENH  175 (326)
T ss_dssp             CEEEESEEEEEEESCEEECCCSTTSCSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCSEEECTTCEEEEEESCEEEEE
T ss_pred             EEEEEecceEEEECeEEEcCCCCCCCeEEEecCCCcEEEEeeEEeccccCCcCccccCcceEecCCCceEEEEceEEecC
Confidence            467778999999999999864   33477775 788888888886421    11223443 44 3467888888888766


Q ss_pred             CCeEEeCCC------ceeEEEEEEEEcCC--CeeEEEecCCCCCCCcEEEEEEEeEEEecc-cceEEE
Q 015319          334 DDCVSIQTG------CSNVYVHNVNCGPG--HGISIGSLGKDNTKACVSNITVRDVMMHNT-MNGVRI  392 (409)
Q Consensus       334 DD~Iai~sg------~~nV~I~n~~~~~g--~GisIGs~g~~~~~~~v~nI~v~n~~~~~~-~~Gi~I  392 (409)
                      +.+.-++..      -.+|++.+|.+.+.  +.=.+..          -.+++-||++.+. .+++..
T Consensus       176 ~k~~LiG~sd~~~~~~~~vT~~~N~f~~~~~R~Pr~r~----------G~~Hv~NN~~~n~~~~~~~~  233 (326)
T 3vmv_A          176 WKTMLVGHTDNASLAPDKITYHHNYFNNLNSRVPLIRY----------ADVHMFNNYFKDINDTAINS  233 (326)
T ss_dssp             EECEEECSSSCGGGCCEEEEEESCEEEEEEECTTEEES----------CEEEEESCEEEEESSCSEEE
T ss_pred             ceEEEECCCCCCcccCccEEEEeeEecCCcCcCCcccC----------CcEEEEccEEECCCceEEee
Confidence            666666553      13677777776541  1112210          1467777777764 355443

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=98.34  E-value=6.3e-06  Score=82.08  Aligned_cols=100  Identities=17%  Similarity=0.297  Sum_probs=65.9

Q ss_pred             eEEeecCccEEEEeEEEeCCCC---------C--CCCCceeecCcccEEEEeeEEeeC------------------CCeE
Q 015319          287 HLKFDNCIGVVVHDVSVSSPGD---------S--PNTDGIHLQNSKDVLIHTSNLACG------------------DDCV  337 (409)
Q Consensus       287 ~i~~~~~~nV~I~n~~I~s~~~---------~--~n~DGI~l~~s~nV~I~n~~i~~g------------------DD~I  337 (409)
                      ++.+..++||.|+|++|+...+         .  ...|+|.+.+++||.|++|.|..+                  |.++
T Consensus        97 gl~i~~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i~~s~nVWIDH~s~s~~~~~d~~~~~~~G~~~~~~Dgl~  176 (355)
T 1pcl_A           97 SLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGAL  176 (355)
T ss_pred             EEEEecCCeEEEeeeEEEcCcccccccccccCccccCceEEecCCCcEEEEeeEEeccccCccccccccCccccccccce
Confidence            5666778888888888875421         0  246888888888888888888753                  4456


Q ss_pred             EeCCCceeEEEEEEEEcC-CCeeEEEecCCCC-CCCcEEEEEEEeEEEecc
Q 015319          338 SIQTGCSNVYVHNVNCGP-GHGISIGSLGKDN-TKACVSNITVRDVMMHNT  386 (409)
Q Consensus       338 ai~sg~~nV~I~n~~~~~-g~GisIGs~g~~~-~~~~v~nI~v~n~~~~~~  386 (409)
                      .++.++.+|+|.||.|.. ..++-+|+...+. ......+|+|.+|.+.++
T Consensus       177 Di~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~~  227 (355)
T 1pcl_A          177 DIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDRV  227 (355)
T ss_pred             eeecCCCcEEEEeeEEcCCCceEEeCCCCCCcccccCcceEEEECcEEeCC
Confidence            666677888888888876 3355566532111 111234677777777654

>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1

Probab=98.30  E-value=5e-05  Score=75.54  Aligned_cols=92  Identities=24%  Similarity=0.230  Sum_probs=55.9

Q ss_pred             eEEEEeeeeEEEeceEEecCC---------------CCeEEeecCccEEEEeEEEeCCCC---------CC---CCCc-e
Q 015319          264 ALRFYGSFNVTVTGITIQNSP---------------QCHLKFDNCIGVVVHDVSVSSPGD---------SP---NTDG-I  315 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~---------------~~~i~~~~~~nV~I~n~~I~s~~~---------~~---n~DG-I  315 (409)
                      .|.+.+++||.|++|+|.+..               ..+|.+..+++|.|++|++....+         +.   ..|| +
T Consensus        97 gl~i~~~~NVIIrnl~i~~~~~~~p~~~~~~g~~~~~DaI~i~~s~nVWIDH~s~s~~~~~d~~~~~~~G~~~~~~Dgl~  176 (355)
T 1pcl_A           97 SLVIKGVKNVILRNLYIETPVDVAPHYESGDGWNAEWDAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGAL  176 (355)
T ss_pred             EEEEecCCeEEEeeeEEEcCcccccccccccCccccCceEEecCCCcEEEEeeEEeccccCccccccccCccccccccce
Confidence            455667788888888887531               235777788888888888875310         00   1355 3


Q ss_pred             eec-CcccEEEEeeEEeeCCCeEEeCCC---------ceeEEEEEEEEcC
Q 015319          316 HLQ-NSKDVLIHTSNLACGDDCVSIQTG---------CSNVYVHNVNCGP  355 (409)
Q Consensus       316 ~l~-~s~nV~I~n~~i~~gDD~Iai~sg---------~~nV~I~n~~~~~  355 (409)
                      ++. .+.+|||.+|.|...+.+.-++..         ..+|+|++|.+.+
T Consensus       177 Di~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~  226 (355)
T 1pcl_A          177 DIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSGKLRVTFHNNVFDR  226 (355)
T ss_pred             eeecCCCcEEEEeeEEcCCCceEEeCCCCCCcccccCcceEEEECcEEeC
Confidence            343 567888888888766555555432         1146666665543

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=98.27  E-value=9.4e-06  Score=80.58  Aligned_cols=72  Identities=14%  Similarity=0.197  Sum_probs=43.5

Q ss_pred             eEEEEeeeeEEEeceEEecCC----------------------CCeEEeecCccEEEEeEEEeCCCCCCCCCce-ee-cC
Q 015319          264 ALRFYGSFNVTVTGITIQNSP----------------------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGI-HL-QN  319 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~----------------------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI-~l-~~  319 (409)
                      .|.+..++||.|++++|.+..                      ..+|.+..+++|.|++|+|..     ..||+ ++ ..
T Consensus       107 gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~nVwIDHcs~s~-----~~Dg~id~~~~  181 (346)
T 1pxz_A          107 CLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSD-----CSDGLIDVTLG  181 (346)
T ss_dssp             CEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCEEEEEESCEEEC-----CSSEEEEEESS
T ss_pred             eEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCceEEEEeeEEec-----CCCCcEeeccC
Confidence            456678899999999998752                      123555566666666666655     34554 34 35


Q ss_pred             cccEEEEeeEEeeCCCeEEeC
Q 015319          320 SKDVLIHTSNLACGDDCVSIQ  340 (409)
Q Consensus       320 s~nV~I~n~~i~~gDD~Iai~  340 (409)
                      +.+|||++|.|...+.++-++
T Consensus       182 s~~vTISnn~f~~H~k~~l~G  202 (346)
T 1pxz_A          182 STGITISNNHFFNHHKVMLLG  202 (346)
T ss_dssp             CEEEEEESCEEESEEEEEEES
T ss_pred             cceEEEEeeEEecCCceeEEC
Confidence            556666666665544444443

>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5}

Probab=98.25  E-value=0.00015  Score=69.78  Aligned_cols=193  Identities=19%  Similarity=0.239  Sum_probs=128.6

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEec--ceEEcCCCCc
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD--GTIIAPTGSK  183 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~--Gtl~~~~~~~  183 (409)
                      .++++.+++|||.+|-.+||+++|.+.+..     -..|++|+| .|-..-+.+      +...|+..  |+|..-+.. 
T Consensus        61 darvls~k~fga~~~~~~d~~~~~~~sl~s-----~~~v~i~~g-vf~ss~i~~------~~c~l~g~g~g~~~~~~~~-  127 (542)
T 2x3h_A           61 DARVLTSKPFGAAGDATTDDTEVIAASLNS-----QKAVTISDG-VFSSSGINS------NYCNLDGRGSGVLSHRSST-  127 (542)
T ss_dssp             HHHBCBSSCTTCCCBSSSCCHHHHHHHHTS-----SSCEECCSE-EEEECCEEE------SCCEEECTTTEEEEECSSS-
T ss_pred             hheeeecccccccCCcccCcHHHHHhhhcc-----cccEecccc-ccccccccc------ccccccccCCceeeeecCC-
Confidence            467889999999999999999999987754     357999999 888777765      33467766  477653322 


Q ss_pred             ccCCCceeeEEEe-----cccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCC
Q 015319          184 DWGKGLLWWLDFT-----KLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMP  258 (409)
Q Consensus       184 ~~~~g~~~~i~~~-----~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (409)
                            ...+.|.     .+++++|.|+      -                                          ..+
T Consensus       128 ------gn~lvfn~p~~g~ls~~ti~~n------k------------------------------------------~~d  153 (542)
T 2x3h_A          128 ------GNYLVFNNPRTGRLSNITVESN------K------------------------------------------ATD  153 (542)
T ss_dssp             ------SCCEEEESCEEEEEEEEEEECC------C------------------------------------------SST
T ss_pred             ------CCEEEEeCCCCcceeeEEEecc------c------------------------------------------CCc
Confidence                  2223332     3566777662      1                                          111


Q ss_pred             CCCceeEEEEeeeeEEEeceEEecCCCCeEEee------cCccEEEEeEEEeCCCCCC--CCCceeecCcccEEEEeeEE
Q 015319          259 SIKPTALRFYGSFNVTVTGITIQNSPQCHLKFD------NCIGVVVHDVSVSSPGDSP--NTDGIHLQNSKDVLIHTSNL  330 (409)
Q Consensus       259 ~~rp~~i~~~~~~nv~I~gvti~ns~~~~i~~~------~~~nV~I~n~~I~s~~~~~--n~DGI~l~~s~nV~I~n~~i  330 (409)
                      ....+.+.|.+-.+|+++++.|.|....++.+.      --++..|++++=.-.+...  .+-++-++++.|-+|++...
T Consensus       154 s~qg~qvs~~gg~dvsv~~i~fsn~~g~gfsliayp~~~~p~g~~i~~irg~y~g~a~nk~agcvl~dss~nslid~via  233 (542)
T 2x3h_A          154 TTQGQQVSLAGGSDVTVSDVNFSNVKGTGFSLIAYPNDAPPDGLMIKGIRGSYSGYATNKAAGCVLADSSVNSLIDNVIA  233 (542)
T ss_dssp             TCBCCSEEEESCEEEEEEEEEEEEECSBEEEEEEECSSSCCBSCEEEEEEEEECSCCTTCSEEEEEEESCBSCEEEEEEE
T ss_pred             cccceEEEecCCCcceEeeeeeeecCCCceeEEEcCCCCCCCceEEeccccceeccccccccceEEeccchhhhhhhhhh
Confidence            224456888999999999999999887776543      2356788888876544433  33345557889999999988


Q ss_pred             eeCC--CeEEeCCCceeEEEEEEEEcCC-CeeEEEecC
Q 015319          331 ACGD--DCVSIQTGCSNVYVHNVNCGPG-HGISIGSLG  365 (409)
Q Consensus       331 ~~gD--D~Iai~sg~~nV~I~n~~~~~g-~GisIGs~g  365 (409)
                      ++.-  .++-++...+.-.|.|++-..+ |-..-|.++
T Consensus       234 ~nypqfgavelk~~a~ynivsnvig~~cqhv~yngte~  271 (542)
T 2x3h_A          234 KNYPQFGAVELKGTASYNIVSNVIGADCQHVTYNGTEG  271 (542)
T ss_dssp             ESCCTTEEEEEETTCBSCEEEEEEEESCSEEEEEECSS
T ss_pred             hcCCccceEEeecceeeehhhhhhhccceeEEECCccC
Confidence            8753  4677777655445555543333 223444443

>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1

Probab=98.23  E-value=5.8e-06  Score=82.08  Aligned_cols=101  Identities=15%  Similarity=0.178  Sum_probs=76.7

Q ss_pred             CCeEEeecCccEEEEeEEEeCCC------------------CCCCCCceeecCcccEEEEeeEEeeCCCeE-EeCCCcee
Q 015319          285 QCHLKFDNCIGVVVHDVSVSSPG------------------DSPNTDGIHLQNSKDVLIHTSNLACGDDCV-SIQTGCSN  345 (409)
Q Consensus       285 ~~~i~~~~~~nV~I~n~~I~s~~------------------~~~n~DGI~l~~s~nV~I~n~~i~~gDD~I-ai~sg~~n  345 (409)
                      ..++.+..++||.|+|++|+...                  .....|||.+.+++||.|++|.|..+.|++ .+.-++.+
T Consensus       105 G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~nVwIDHcs~s~~~Dg~id~~~~s~~  184 (346)
T 1pxz_A          105 GPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTG  184 (346)
T ss_dssp             SCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCEEEEEESCEEECCSSEEEEEESSCEE
T ss_pred             cceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCceEEEEeeEEecCCCCcEeeccCcce
Confidence            36788889999999999998531                  125789999999999999999999887775 67667999


Q ss_pred             EEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEE-ecc
Q 015319          346 VYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMM-HNT  386 (409)
Q Consensus       346 V~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~-~~~  386 (409)
                      |+|+||.+.. ..++-+|+...+ ......+|+|.+|.+ .++
T Consensus       185 vTISnn~f~~H~k~~l~G~sd~~-~~d~~~~vT~~~N~f~~~~  226 (346)
T 1pxz_A          185 ITISNNHFFNHHKVMLLGHDDTY-DDDKSMKVTVAFNQFGPNA  226 (346)
T ss_dssp             EEEESCEEESEEEEEEESCCSSC-GGGGGCEEEEESCEECSSE
T ss_pred             EEEEeeEEecCCceeEECCCCcc-ccCCceEEEEEeeEEeCCc
Confidence            9999999997 336777664221 112235778888887 543

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=98.16  E-value=8.5e-05  Score=73.83  Aligned_cols=129  Identities=12%  Similarity=0.145  Sum_probs=83.4

Q ss_pred             eEEEEeeeeEEEeceEEecCC-----CCeEEeecCccEEEEeEEEeCCCCC--------CCCCce-ee-cCcccEEEEee
Q 015319          264 ALRFYGSFNVTVTGITIQNSP-----QCHLKFDNCIGVVVHDVSVSSPGDS--------PNTDGI-HL-QNSKDVLIHTS  328 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~-----~~~i~~~~~~nV~I~n~~I~s~~~~--------~n~DGI-~l-~~s~nV~I~n~  328 (409)
                      .|.+.+++||.|++|+|...+     ...|.+..+++|.|++|++....+.        ...||. ++ ..+.+|||.+|
T Consensus       104 gl~i~~~~NVIIrnl~i~~~~~~~~~~DaI~i~~s~nVWIDH~s~s~~~~~~~g~~~~~~~~DGl~di~~~s~~VTISnn  183 (353)
T 1air_A          104 GIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSYN  183 (353)
T ss_dssp             EEEEESCCSEEEESCEEESCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGCCSSCCSEEEESSCCEEEEESC
T ss_pred             eEEEeccCcEEEeccEEEeCCCCCCCCCeEEeeCCCcEEEEeeEEecCCcccccccccccccccceeeecccCcEEEEee
Confidence            577789999999999999654     3458899999999999999864211        113554 55 46889999999


Q ss_pred             EEeeCCCeEEeCCC----ceeEEEEEEEEcC------------------------CCeeEEEecCCCCCCCcEEEEEEEe
Q 015319          329 NLACGDDCVSIQTG----CSNVYVHNVNCGP------------------------GHGISIGSLGKDNTKACVSNITVRD  380 (409)
Q Consensus       329 ~i~~gDD~Iai~sg----~~nV~I~n~~~~~------------------------g~GisIGs~g~~~~~~~v~nI~v~n  380 (409)
                      .|...+.+.-++..    ..+|+|++|.+.+                        ++||..+.         -..|.+++
T Consensus       184 ~f~~h~k~~LiG~sd~~~g~~vT~hhN~f~~~~~R~Pr~r~G~~Hv~NN~~~n~~~~~~~~~~---------~~~i~~e~  254 (353)
T 1air_A          184 YIHGVKKVGLDGSSSSDTGRNITYHHNYYNDVNARLPLQRGGLVHAYNNLYTNITGSGLNVRQ---------NGQALIEN  254 (353)
T ss_dssp             EEEEEEECCEESSSTTCCCCEEEEESCEEEEEEECSCEEESSEEEEESCEEEEESSCSEEEET---------TCEEEEES
T ss_pred             EEcCCCceeEECCCcCCCCceEEEEceEEcCCcCCCCCCcCceEEEEccEEECCCCceeccCC---------CcEEEEEc
Confidence            99865444444332    1345665554433                        12222211         13789999


Q ss_pred             EEEecccceEEEEeecCC-CCeE
Q 015319          381 VMMHNTMNGVRIKTWQVM-IPSG  402 (409)
Q Consensus       381 ~~~~~~~~Gi~Ikt~~G~-~g~v  402 (409)
                      |+|++..+.+ .+.+++. .|+.
T Consensus       255 N~F~~~~~p~-~~~~~~~~~g~~  276 (353)
T 1air_A          255 NWFEKAINPV-TSRYDGKNFGTW  276 (353)
T ss_dssp             CEEEEEESSE-EECSSSSSCCEE
T ss_pred             eEEECCCCce-EecCCCCCCcee
Confidence            9999877665 3444432 3443

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=98.14  E-value=5.1e-06  Score=84.33  Aligned_cols=99  Identities=15%  Similarity=0.243  Sum_probs=59.2

Q ss_pred             eEEeecCccEEEEeEEEeCCCC---------------CCCCCceeecCcccEEEEeeEEeeC------------------
Q 015319          287 HLKFDNCIGVVVHDVSVSSPGD---------------SPNTDGIHLQNSKDVLIHTSNLACG------------------  333 (409)
Q Consensus       287 ~i~~~~~~nV~I~n~~I~s~~~---------------~~n~DGI~l~~s~nV~I~n~~i~~g------------------  333 (409)
                      +|.+..++||.|+|++|+...+               ....|+|.+.+++||.|++|.|..+                  
T Consensus       149 gl~i~~~~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~~~  228 (416)
T 1vbl_A          149 GFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQH  228 (416)
T ss_dssp             EEEEESCEEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCC
T ss_pred             EEEeecCceEEEeCeEEEcCccccccccccccccccccCCCceEEecCCceEEEEccEEecCCCcccccccccCcceeec
Confidence            5666677777777777765321               1245778887788888888887743                  


Q ss_pred             CCeEEeCCCceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEec
Q 015319          334 DDCVSIQTGCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHN  385 (409)
Q Consensus       334 DD~Iai~sg~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~  385 (409)
                      |.++.++.++.+|+|.||.|.. ..++-||+...+.......+|+|.+|.|.+
T Consensus       229 DGl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g~~~VT~hhN~f~~  281 (416)
T 1vbl_A          229 DGALDIKNSSDFITISYNVFTNHDKVTLIGASDSRMADSGHLRVTLHHNYYKN  281 (416)
T ss_dssp             CCSEEEESSCEEEEEESCEEEEEEECCEECSCTTCGGGTTCCCEEEESCEEEE
T ss_pred             ccceeeecCCCcEEEEeeEEcCCCceeEeCCCCCCcccCCceEEEEECcEecC
Confidence            5556666667888888887776 224555543211111112245555555544

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=98.11  E-value=0.00016  Score=71.36  Aligned_cols=117  Identities=12%  Similarity=-0.022  Sum_probs=69.2

Q ss_pred             eeEEEEeeeeEEEeceEEecCCCCeEEee-cCccEEEEeEEEeCCCCC---CCCCcee---ecCcccEEEEeeEEeeCC-
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQCHLKFD-NCIGVVVHDVSVSSPGDS---PNTDGIH---LQNSKDVLIHTSNLACGD-  334 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~-~~~nV~I~n~~I~s~~~~---~n~DGI~---l~~s~nV~I~n~~i~~gD-  334 (409)
                      .+|.+.+++||-|+.++|.....-.+++. .+++|+|+++.|......   ...|+-.   ..+..+|+++++.+.+.. 
T Consensus       117 DaI~i~~s~nVWIDHcs~s~~~Dg~idi~~~s~~vTISnn~f~~h~k~~LiG~sd~~~~~~d~g~~~vT~hhN~f~~~~~  196 (340)
T 3zsc_A          117 DYINVENSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYFKNLIQ  196 (340)
T ss_dssp             CSEEEESCEEEEEESCEEESCSSCSEEEETTCEEEEEESCEEESCSBCCEECCCTTSCHHHHHHSCEEEEESCEEESCCB
T ss_pred             CeEEEecCCcEEEEeeeeccCCccceEEecCCceEEEECcEeccCceeeEeCcCCCCccccccCCcEEEEECeEecCCCC
Confidence            46777788888888888887755556665 478888888888764321   1112110   011236888888775421 


Q ss_pred             CeEEeCCCceeEEEEEEEEcC----------CCeeEEEecCCCCCCCcEEEEEEEeEEEecccc
Q 015319          335 DCVSIQTGCSNVYVHNVNCGP----------GHGISIGSLGKDNTKACVSNITVRDVMMHNTMN  388 (409)
Q Consensus       335 D~Iai~sg~~nV~I~n~~~~~----------g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~  388 (409)
                      ..=.++.|  .++|-||.+.+          -.+.+|+.-.       =..|.+|+|+|.+..+
T Consensus       197 R~Pr~r~G--~~Hv~NN~~~n~~~~~~~~~~~~~yai~~~~-------~a~i~~E~N~F~~~~~  251 (340)
T 3zsc_A          197 RMPRIRFG--MAHVFNNFYSMGLRTGVSGNVFPIYGVASAM-------GAKVHVEGNYFMGYGA  251 (340)
T ss_dssp             CTTEEESS--EEEEESCEEECCCCCSCSSCCSCCEEEEEET-------TCEEEEESCEEECSCH
T ss_pred             CCCcccCC--eEEEEccEEECCccccccccceeeeeEecCC-------CCEEEEECcEEECCCc
Confidence            11122222  56777777776          2223443320       1489999999998877

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=98.10  E-value=1.7e-05  Score=78.97  Aligned_cols=62  Identities=16%  Similarity=0.248  Sum_probs=38.8

Q ss_pred             EEEE-eeeeEEEeceEEecC------CCCeEEeecCccEEEEeEEEeCCCCCCCCCcee---ecCcccEEEEeeEEe
Q 015319          265 LRFY-GSFNVTVTGITIQNS------PQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIH---LQNSKDVLIHTSNLA  331 (409)
Q Consensus       265 i~~~-~~~nv~I~gvti~ns------~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~---l~~s~nV~I~n~~i~  331 (409)
                      |.+. +++||.|++|+|.+.      ...+|.+..+++|.|++|++...     .|+..   ...+.+|||.+|.|.
T Consensus       126 l~i~~~a~NVIIrnL~i~~~~~~~~~g~DaI~i~~s~nVwIDHcs~s~~-----~d~~~~~g~~~s~~VTISnn~f~  197 (359)
T 1idk_A          126 LRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARI-----GRQHYVLGTSADNRVSLTNNYID  197 (359)
T ss_dssp             EEECTTCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEEE-----SSCSEEECCCTTCEEEEESCEEE
T ss_pred             EEEecCCCcEEEeCeEEEcccccccccCCceeecCCCcEEEEeeEeecC-----CCCcEEecccCcceEEEECcEec
Confidence            4555 667777777777752      12346677777777777777752     33333   345667777777775

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=98.08  E-value=4.4e-05  Score=75.25  Aligned_cols=78  Identities=14%  Similarity=0.138  Sum_probs=56.5

Q ss_pred             eEEEE-eeeeEEEeceEEecCC----CCeEEee-----cCccEEEEeEEEeCCCC------CCCCCc-eeec-CcccEEE
Q 015319          264 ALRFY-GSFNVTVTGITIQNSP----QCHLKFD-----NCIGVVVHDVSVSSPGD------SPNTDG-IHLQ-NSKDVLI  325 (409)
Q Consensus       264 ~i~~~-~~~nv~I~gvti~ns~----~~~i~~~-----~~~nV~I~n~~I~s~~~------~~n~DG-I~l~-~s~nV~I  325 (409)
                      .|.+. +++||.|++|+|.+..    ..+|.+.     .+++|.|++|++....+      ....|| +++. .+.+|||
T Consensus        87 gl~i~~~~~NVIIrnl~i~~~~~~~~~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~~~~~~~Dg~idi~~~s~~VTI  166 (330)
T 2qy1_A           87 GIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSGAGDASFDGGIDMKKGVHHVTV  166 (330)
T ss_dssp             EEEEESSCEEEEEESCEEESCSSGGGCCSEEEECBTTBCCEEEEEESCEEECCCCCCTTCTTCSSCCSEEEESSCEEEEE
T ss_pred             eEEEeCCCCeEEEeCeEEeCCCCCCCCcceeeccccCcccccEEEEeEEEEccccccccCCcceeecccccccCcceEEE
Confidence            57777 8999999999999774    4568888     59999999999975321      011254 4553 5889999


Q ss_pred             EeeEEeeCCCeEEeCC
Q 015319          326 HTSNLACGDDCVSIQT  341 (409)
Q Consensus       326 ~n~~i~~gDD~Iai~s  341 (409)
                      .+|.|.+.+.++-++.
T Consensus       167 Snn~f~~h~k~~L~G~  182 (330)
T 2qy1_A          167 SYNYVYNYQKVALNGY  182 (330)
T ss_dssp             ESCEEEEEEECCEESS
T ss_pred             EcceeccCCeEEEECC
Confidence            9999986555554443

>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima}

Probab=98.05  E-value=2.3e-05  Score=77.46  Aligned_cols=116  Identities=17%  Similarity=0.170  Sum_probs=78.7

Q ss_pred             eeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCC-------CCCCCceeecCcccEEEEeeEEeeC-CCeEEeCCC
Q 015319          271 FNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGD-------SPNTDGIHLQNSKDVLIHTSNLACG-DDCVSIQTG  342 (409)
Q Consensus       271 ~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~-------~~n~DGI~l~~s~nV~I~n~~i~~g-DD~Iai~sg  342 (409)
                      .|.+|.|..-.--...+|.+..++||.|+|++|+....       ....|+|.+..++||.|++|.|..+ |.++.+..+
T Consensus        68 snkTI~G~ga~~I~G~Gi~I~~a~NVIIrnl~i~~~~~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~Dg~idi~~~  147 (340)
T 3zsc_A           68 SDKTIVGINDAKIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKYDFDYINVENSHHIWIDHITFVNGNDGAVDIKKY  147 (340)
T ss_dssp             SSEEEEEEEEEEEEEEEEEEESCEEEEEESCEEECCCCTTCTTSCSSCCCSEEEESCEEEEEESCEEESCSSCSEEEETT
T ss_pred             CCCEEEeccCcEEecCceEEEcCceEEEeCeEEECCccccCccCCcCCCCeEEEecCCcEEEEeeeeccCCccceEEecC
Confidence            45566555432001235777788999999999987521       1278999999999999999999865 556888878


Q ss_pred             ceeEEEEEEEEcCC-CeeEEEecCCCC--CCCcEEEEEEEeEEEecc
Q 015319          343 CSNVYVHNVNCGPG-HGISIGSLGKDN--TKACVSNITVRDVMMHNT  386 (409)
Q Consensus       343 ~~nV~I~n~~~~~g-~GisIGs~g~~~--~~~~v~nI~v~n~~~~~~  386 (409)
                      +.+|+|.||.|... .++-+|+.-.+.  ....-.+|+|.+|.+.++
T Consensus       148 s~~vTISnn~f~~h~k~~LiG~sd~~~~~~d~g~~~vT~hhN~f~~~  194 (340)
T 3zsc_A          148 SNYITVSWNKFVDHDKVSLVGSSDKEDPEQAGQAYKVTYHHNYFKNL  194 (340)
T ss_dssp             CEEEEEESCEEESCSBCCEECCCTTSCHHHHHHSCEEEEESCEEESC
T ss_pred             CceEEEECcEeccCceeeEeCcCCCCccccccCCcEEEEECeEecCC
Confidence            99999999999873 356666531100  000124677777777654

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=98.05  E-value=0.00018  Score=71.69  Aligned_cols=62  Identities=19%  Similarity=0.176  Sum_probs=42.4

Q ss_pred             EEEE-eeeeEEEeceEEecCC------CCeEEeecCccEEEEeEEEeCCCCCCCCCcee---ecCcccEEEEeeEEe
Q 015319          265 LRFY-GSFNVTVTGITIQNSP------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIH---LQNSKDVLIHTSNLA  331 (409)
Q Consensus       265 i~~~-~~~nv~I~gvti~ns~------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~---l~~s~nV~I~n~~i~  331 (409)
                      |.+. .++||.|++|+|++..      ..+|.+..+++|.|++|++..     ..|+..   ...+.+|||.+|.|.
T Consensus       126 l~i~~~a~NVIIrnl~i~~~~~~~~~~~DaI~i~~s~nvwIDHcs~s~-----~~d~~~~~~~~~s~~vTISnn~f~  197 (359)
T 1qcx_A          126 LRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTAR-----IGRQHIVLGTSADNRVTISYSLID  197 (359)
T ss_dssp             EEEETTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEE-----ESSCSEEECSSCCEEEEEESCEEE
T ss_pred             EEEecCCCCEEEeCcEEEecCCcccccCceeEecCCceEEEEeeEeec-----cCcCceeecccccccEEEECcEec
Confidence            5555 6778888888887643      235777778888888888876     234432   235778888888886

>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A*

Probab=98.03  E-value=1.5e-05  Score=79.32  Aligned_cols=112  Identities=18%  Similarity=0.183  Sum_probs=82.6

Q ss_pred             eeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCC-CCCCCCceeecCcccEEEEeeEEeeC--------------C
Q 015319          270 SFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPG-DSPNTDGIHLQNSKDVLIHTSNLACG--------------D  334 (409)
Q Consensus       270 ~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~-~~~n~DGI~l~~s~nV~I~n~~i~~g--------------D  334 (409)
                      ..|++|.|.+-. ....+|.+..++||.|+|++|+... .....|+|.+..++||.|++|.|..+              |
T Consensus        88 ~sn~TI~G~~~~-~~g~gl~i~~~~NVIIrnl~i~~~~~~~~~~DaI~i~~s~nVWIDH~s~s~~~~~~~g~~~~~~~~D  166 (353)
T 1air_A           88 TKGITIIGANGS-SANFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFE  166 (353)
T ss_dssp             CSCEEEEECTTC-CBSSEEEEESCCSEEEESCEEESCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGCCSSC
T ss_pred             CCCEEEEeccCC-CCCceEEEeccCcEEEeccEEEeCCCCCCCCCeEEeeCCCcEEEEeeEEecCCcccccccccccccc
Confidence            357788875321 1245788889999999999999642 23468999999999999999999643              4


Q ss_pred             CeEEeCCCceeEEEEEEEEcCCC-eeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          335 DCVSIQTGCSNVYVHNVNCGPGH-GISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       335 D~Iai~sg~~nV~I~n~~~~~g~-GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      ..+.++-++.+|+|.||.|...+ +.-+|+...  ..+  .+|+|.+|.+.++
T Consensus       167 Gl~di~~~s~~VTISnn~f~~h~k~~LiG~sd~--~~g--~~vT~hhN~f~~~  215 (353)
T 1air_A          167 SAVDIKGASNTVTVSYNYIHGVKKVGLDGSSSS--DTG--RNITYHHNYYNDV  215 (353)
T ss_dssp             CSEEEESSCCEEEEESCEEEEEEECCEESSSTT--CCC--CEEEEESCEEEEE
T ss_pred             cceeeecccCcEEEEeeEEcCCCceeEECCCcC--CCC--ceEEEEceEEcCC
Confidence            45777778899999999999733 355555321  112  6888888888764

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=98.03  E-value=9.9e-06  Score=81.79  Aligned_cols=98  Identities=13%  Similarity=0.220  Sum_probs=61.0

Q ss_pred             eEEeecCccEEEEeEEEeCCCC---------------CCCCCceeecCcccEEEEeeEEeeC------------------
Q 015319          287 HLKFDNCIGVVVHDVSVSSPGD---------------SPNTDGIHLQNSKDVLIHTSNLACG------------------  333 (409)
Q Consensus       287 ~i~~~~~~nV~I~n~~I~s~~~---------------~~n~DGI~l~~s~nV~I~n~~i~~g------------------  333 (409)
                      +|.+.. +||.|+|++|+...+               ....|+|.+..++||.|++|.|..+                  
T Consensus       144 gl~i~~-~NVIIrnl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~  222 (399)
T 2o04_A          144 NFQIKS-DNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHH  222 (399)
T ss_dssp             EEEECS-EEEEEESCEEECCCCSSCEEETTSSTTCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCC
T ss_pred             EEEeeC-CCEEEeCeEEecCccccccccccccccccccCCCCeEEecCCCcEEEEeeeeecCCCccccccccccceeecc
Confidence            566666 788888888875421               1246888888888888888888753                  


Q ss_pred             CCeEEeCCCceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEec
Q 015319          334 DDCVSIQTGCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHN  385 (409)
Q Consensus       334 DD~Iai~sg~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~  385 (409)
                      |.++.++.++.+|+|.||.|.. ..++-||+...+.......+|+|.+|.+.+
T Consensus       223 Dgl~Di~~~s~~VTISnn~f~~h~k~~LiG~sd~~~~d~g~~~vT~h~N~f~~  275 (399)
T 2o04_A          223 DGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKN  275 (399)
T ss_dssp             CCSEEEETTCEEEEEESCEEEEEEECCEESCCTTCGGGTTCCCEEEESCEEEE
T ss_pred             ccceeeeccCCcEEEEeeEEcCCCceeEeCCCCCCccccCceeEEEECcEecC
Confidence            5566777777888888888876 234555553211111112355555555554

>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A

Probab=98.02  E-value=1.8e-05  Score=77.98  Aligned_cols=119  Identities=13%  Similarity=0.209  Sum_probs=81.6

Q ss_pred             EEEeeeeEEEeceEEecCCCCeEEee-cCccEEEEeEEEeCCCCCCCCCceeec-----CcccEEEEeeEEeeC------
Q 015319          266 RFYGSFNVTVTGITIQNSPQCHLKFD-NCIGVVVHDVSVSSPGDSPNTDGIHLQ-----NSKDVLIHTSNLACG------  333 (409)
Q Consensus       266 ~~~~~~nv~I~gvti~ns~~~~i~~~-~~~nV~I~n~~I~s~~~~~n~DGI~l~-----~s~nV~I~n~~i~~g------  333 (409)
                      .+.-..|.+|.|-+.. -...+|.+. .++||.|+|++|+........|+|.+.     .++||.|++|.|..+      
T Consensus        67 ~l~v~sn~TI~G~~a~-i~g~gl~i~~~~~NVIIrnl~i~~~~~~~~~DaI~i~g~~~~~s~nVWIDH~s~s~~~~~~~~  145 (330)
T 2qy1_A           67 QIKNKSDVTIKGANGS-AANFGIRVVGNAHNVIIQNMTIGLLQGGEDADSISLEGNSSGEPSKIWVDHNTVFASLTKCSG  145 (330)
T ss_dssp             EEESCCSEEEEECTTC-BBSSEEEEESSCEEEEEESCEEESCSSGGGCCSEEEECBTTBCCEEEEEESCEEECCCCCCTT
T ss_pred             EEEcCCCeEEECCCcE-EeeeeEEEeCCCCeEEEeCeEEeCCCCCCCCcceeeccccCcccccEEEEeEEEEcccccccc
Confidence            3444566777542210 014568888 899999999999974322368999999     599999999999532      


Q ss_pred             ------CCeEEeCCCceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          334 ------DDCVSIQTGCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       334 ------DD~Iai~sg~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                            |..+.++.++.+|+|.||.|.. ..++-+|+...+.. ....+|+|.+|.+.++
T Consensus       146 ~~~~~~Dg~idi~~~s~~VTISnn~f~~h~k~~L~G~sd~~~~-~~~~~vT~h~N~f~~~  204 (330)
T 2qy1_A          146 AGDASFDGGIDMKKGVHHVTVSYNYVYNYQKVALNGYSDSDTK-NSAARTTYHHNRFENV  204 (330)
T ss_dssp             CTTCSSCCSEEEESSCEEEEEESCEEEEEEECCEESSSTTCGG-GGGCEEEEESCEEEEE
T ss_pred             CCcceeecccccccCcceEEEEcceeccCCeEEEECCCCcccc-CCCceEEEECcEEcCC
Confidence                  5567788789999999999986 23455665321111 1124788888877764

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=97.94  E-value=2.4e-05  Score=78.05  Aligned_cols=100  Identities=19%  Similarity=0.317  Sum_probs=60.9

Q ss_pred             CeEEe---ecCccEEEEeEEEeCCCCC-----------CCCCceeecC-cccEEEEeeEEeeC-----------------
Q 015319          286 CHLKF---DNCIGVVVHDVSVSSPGDS-----------PNTDGIHLQN-SKDVLIHTSNLACG-----------------  333 (409)
Q Consensus       286 ~~i~~---~~~~nV~I~n~~I~s~~~~-----------~n~DGI~l~~-s~nV~I~n~~i~~g-----------------  333 (409)
                      .+|.+   ..++||.|+|++|+...+.           ...|+|.+.. ++||.|++|.|..+                 
T Consensus       103 ~gl~i~~~~~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~DaI~i~~~s~nVWIDHcs~s~~~~~~~~~~~~~G~~~~~  182 (361)
T 1pe9_A          103 GSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQ  182 (361)
T ss_dssp             SEEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCC
T ss_pred             CEEEEecCCCCceEEEeCeEEEcCcccccccccccCcccCCceEEeecCCceEEEEccEeecccccccccccccCcceee
Confidence            35666   5677777777777754210           2467888887 88888888888743                 


Q ss_pred             -CCeEEeCCCceeEEEEEEEEcC-CCeeEEEecCCCC-CCCcEEEEEEEeEEEec
Q 015319          334 -DDCVSIQTGCSNVYVHNVNCGP-GHGISIGSLGKDN-TKACVSNITVRDVMMHN  385 (409)
Q Consensus       334 -DD~Iai~sg~~nV~I~n~~~~~-g~GisIGs~g~~~-~~~~v~nI~v~n~~~~~  385 (409)
                       |.++.++.++.+|+|.||.|.. ..++=||+...+. ....-.+|+|.+|.+.+
T Consensus       183 ~DgllDi~~~s~~VTiS~n~f~~h~k~~LiG~sd~~~~~d~g~~~vT~hhN~f~~  237 (361)
T 1pe9_A          183 HDGALDIKRGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNR  237 (361)
T ss_dssp             CCCSEEECTTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEE
T ss_pred             ccceeeeecCCCcEEEEeeEEcCCCceeEecCCCCCcccccCcceEEEECeEEcC
Confidence             5567777777888888888876 2244455421100 00012356666665554

>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2

Probab=97.87  E-value=0.00014  Score=72.48  Aligned_cols=121  Identities=13%  Similarity=0.020  Sum_probs=74.1

Q ss_pred             eeEEEEeeeeEEEeceEEecCCCCeEE--eecCccEEEEeEEEeCCCC-CCCCCcee-----e-cCcccEEEEeeEEeeC
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQCHLK--FDNCIGVVVHDVSVSSPGD-SPNTDGIH-----L-QNSKDVLIHTSNLACG  333 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~~~i~--~~~~~nV~I~n~~I~s~~~-~~n~DGI~-----l-~~s~nV~I~n~~i~~g  333 (409)
                      .+|.+.+++||-|++++|.....-.+.  ...+++|+|+++.|....+ +...+|.|     | ..+.+|+++++.+.+.
T Consensus       154 DaI~i~~s~nvwIDHcs~s~~~d~~~~~~~~~s~~vTISnn~f~~~~~~s~~~~G~H~~~~~l~G~sd~vT~~~N~f~~~  233 (359)
T 1qcx_A          154 DAITVDDSDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNL  233 (359)
T ss_dssp             CSEEEESCCCEEEESCEEEEESSCSEEECSSCCEEEEEESCEEECBCSSBTTSSSBBSCCEEECCSSEEEEEESCEEESB
T ss_pred             ceeEecCCceEEEEeeEeeccCcCceeecccccccEEEECcEecCCccccccCcccccceeEEecCCCCeehcccEeccC
Confidence            577888888888888888866443342  3468888888888875321 12233333     3 2356888888888643


Q ss_pred             CC-eEEeCCCceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEE
Q 015319          334 DD-CVSIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVR  391 (409)
Q Consensus       334 DD-~Iai~sg~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~  391 (409)
                      .. .=.+.. ...++|.|+.+..-.+.+|+.-       .-..|.+++|+|.+..+.+.
T Consensus       234 ~~R~Pr~r~-~~~~hv~NN~~~n~~~~a~~~~-------~~~~i~~e~N~F~~~~~~~~  284 (359)
T 1qcx_A          234 SGRMPKVQG-NTLLHAVNNLFHNFDGHAFEIG-------TGGYVLAEGNVFQDVNVVVE  284 (359)
T ss_dssp             CSCTTEECS-SEEEEEESCEEEEEEEEEEEEC-------TTEEEEEESCEEEEEEEEEC
T ss_pred             cccCceecC-CceEEEEccEEECccCeEEecC-------CCceEEEEeeEEECCCcccC
Confidence            21 111121 2467888887776333333321       12578888888888766654

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A

Probab=97.79  E-value=0.00031  Score=69.54  Aligned_cols=106  Identities=10%  Similarity=0.107  Sum_probs=72.8

Q ss_pred             EeeeeEEEeceEEecCCC------------------C--eEE-eecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEE
Q 015319          268 YGSFNVTVTGITIQNSPQ------------------C--HLK-FDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIH  326 (409)
Q Consensus       268 ~~~~nv~I~gvti~ns~~------------------~--~i~-~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~  326 (409)
                      ..+++++++||+|+|+..                  .  ++. -..++++.+++|.|..     ..|.+..... ...++
T Consensus        93 v~a~~f~a~nlt~~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~v~~d~~~f~~c~f~G-----~QDTLy~~~g-r~~~~  166 (342)
T 2nsp_A           93 ISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVG-----YQATLYVSGG-RSFFS  166 (342)
T ss_dssp             ECSBSCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCBSEEEEEEEEEC-----STTCEEECSS-EEEEE
T ss_pred             EECCCEEEEeeEEEccccccccccccccCCccccCCceEEEEEeeccCcEEEEeeEEec-----ccceEEECCC-CEEEE
Confidence            368899999999999751                  1  242 2578999999999999     7888888754 68889


Q ss_pred             eeEEeeCCCeEEeCCCceeEEEEEEEEcC-C-----C----e-eEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          327 TSNLACGDDCVSIQTGCSNVYVHNVNCGP-G-----H----G-ISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       327 n~~i~~gDD~Iai~sg~~nV~I~n~~~~~-g-----~----G-isIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      +|+|...-|=| ++.  -...|+||++.. .     +    | |.--+  ..  ...-.-+.|.||+|...
T Consensus       167 ~c~I~G~vDFI-FG~--a~a~f~~c~i~~~~~~~~~~~~~~g~ItA~~--~~--~~~~~G~vf~~c~i~~~  230 (342)
T 2nsp_A          167 DCRISGTVDFI-FGD--GTALFNNCDLVSRYRADVKSGNVSGYLTAPS--TN--INQKYGLVITNSRVIRE  230 (342)
T ss_dssp             SCEEEESEEEE-EES--SEEEEESCEEEECCCTTSCTTSCCEEEEEEC--CB--TTCSCCEEEESCEEEES
T ss_pred             cCEEEeceEEE-eCC--ceEEEecCEEEEecCcccccccCceEEEccC--CC--CCCCCEEEEEcCEEecC
Confidence            99998765544 333  348899998864 1     1    3 32222  11  11223478999999864

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}

Probab=97.77  E-value=0.0006  Score=67.95  Aligned_cols=107  Identities=14%  Similarity=0.109  Sum_probs=74.6

Q ss_pred             EeeeeEEEeceEEecCCC--------------------CeEEee-cCccEEEEeEEEeCCCCCCCCCceeecCcccEEEE
Q 015319          268 YGSFNVTVTGITIQNSPQ--------------------CHLKFD-NCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIH  326 (409)
Q Consensus       268 ~~~~nv~I~gvti~ns~~--------------------~~i~~~-~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~  326 (409)
                      ..+++++++||+|+|+..                    -++.+. ..+.+.+.+|.|..     ..|.+.........++
T Consensus       119 V~a~~f~a~nitf~Nt~~~~~~~~~~~~~p~~~~~~QAvAl~v~~~~D~~~f~~C~f~G-----~QDTLy~~~~gr~yf~  193 (364)
T 3uw0_A          119 VNAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEG-----YQDTLYSKTGSRSYFS  193 (364)
T ss_dssp             ECSTTCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCEEEEEEEEEEEC-----SBSCEEECTTCEEEEE
T ss_pred             EECCCEEEEeeeeEcCCcccccccccccccccccCCccEEEEEecCCCeEEEEeeEEEe-----cccceEeCCCCCEEEE
Confidence            467899999999999842                    125554 58999999999999     7899988755678999


Q ss_pred             eeEEeeCCCeEEeCCCceeEEEEEEEEcC-C-------Ce-eEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          327 TSNLACGDDCVSIQTGCSNVYVHNVNCGP-G-------HG-ISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       327 n~~i~~gDD~Iai~sg~~nV~I~n~~~~~-g-------~G-isIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      +|+|...-|=|. +.  -...|+||++.. .       .| |.--+  .+  ...-.-+.|.||+|...
T Consensus       194 ~c~I~GtvDFIF-G~--a~a~f~~c~i~~~~~~~~~~~~g~ITA~~--~~--~~~~~G~vf~~c~i~~~  255 (364)
T 3uw0_A          194 DCEISGHVDFIF-GS--GITVFDNCNIVARDRSDIEPPYGYITAPS--TL--TTSPYGLIFINSRLTKE  255 (364)
T ss_dssp             SCEEEESEEEEE-ES--SEEEEESCEEEECCCSSCSSCCEEEEEEC--CC--TTCSCCEEEESCEEEEC
T ss_pred             cCEEEcCCCEEC-Cc--ceEEEEeeEEEEeccCcccCCccEEEeCC--cC--CCCCcEEEEEeeEEecC
Confidence            999987655443 33  457889998864 1       13 33322  21  11123478889988854

>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A

Probab=97.73  E-value=0.00014  Score=72.44  Aligned_cols=82  Identities=17%  Similarity=0.188  Sum_probs=63.9

Q ss_pred             eeEEEece----EEecCCCCeEEee-cCccEEEEeEEEeCC--CCCCCCCceeecCcccEEEEeeEEee-CCCeEEe-CC
Q 015319          271 FNVTVTGI----TIQNSPQCHLKFD-NCIGVVVHDVSVSSP--GDSPNTDGIHLQNSKDVLIHTSNLAC-GDDCVSI-QT  341 (409)
Q Consensus       271 ~nv~I~gv----ti~ns~~~~i~~~-~~~nV~I~n~~I~s~--~~~~n~DGI~l~~s~nV~I~n~~i~~-gDD~Iai-~s  341 (409)
                      .|.+|.|.    .|..   .+|.+. .++||.|+|++|+..  ......|+|.+..++||.|++|.|.. +|..+.. ..
T Consensus       108 snkTI~G~G~~~~i~G---~gl~i~~~a~NVIIrnL~i~~~~~~~~~g~DaI~i~~s~nVwIDHcs~s~~~d~~~~~g~~  184 (359)
T 1idk_A          108 SNKSLIGEGSSGAIKG---KGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIGRQHYVLGTS  184 (359)
T ss_dssp             SSEEEEECTTTCEEES---CCEEECTTCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEEESSCSEEECCC
T ss_pred             CCceEEEecCCeEEec---ceEEEecCCCcEEEeCeEEEcccccccccCCceeecCCCcEEEEeeEeecCCCCcEEeccc
Confidence            56677654    4543   357777 899999999999973  22246799999999999999999975 5667765 44


Q ss_pred             CceeEEEEEEEEcC
Q 015319          342 GCSNVYVHNVNCGP  355 (409)
Q Consensus       342 g~~nV~I~n~~~~~  355 (409)
                      ++.+|+|.||.|.+
T Consensus       185 ~s~~VTISnn~f~~  198 (359)
T 1idk_A          185 ADNRVSLTNNYIDG  198 (359)
T ss_dssp             TTCEEEEESCEEEC
T ss_pred             CcceEEEECcEecC
Confidence            68999999999974

>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A

Probab=97.64  E-value=0.00031  Score=69.98  Aligned_cols=77  Identities=23%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             eEEE---EeeeeEEEeceEEecCC---------------CCeEEeec-CccEEEEeEEEeCCCC------------CCCC
Q 015319          264 ALRF---YGSFNVTVTGITIQNSP---------------QCHLKFDN-CIGVVVHDVSVSSPGD------------SPNT  312 (409)
Q Consensus       264 ~i~~---~~~~nv~I~gvti~ns~---------------~~~i~~~~-~~nV~I~n~~I~s~~~------------~~n~  312 (409)
                      .|.+   .+++||.|++|+|.+..               ..+|.+.. +++|.|+.|++....+            ....
T Consensus       104 gl~i~~~~~~~NVIIrNl~i~~~~d~~p~~~~~~g~~~~~DaI~i~~~s~nVWIDHcs~s~~~~~~~~~~~~~G~~~~~~  183 (361)
T 1pe9_A          104 SLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQH  183 (361)
T ss_dssp             EEEEEGGGTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCC
T ss_pred             EEEEecCCCCceEEEeCeEEEcCcccccccccccCcccCCceEEeecCCceEEEEccEeecccccccccccccCcceeec
Confidence            4566   57788888888887531               23577777 8888888888875311            0113


Q ss_pred             Cc-eeec-CcccEEEEeeEEeeCCCeEEeC
Q 015319          313 DG-IHLQ-NSKDVLIHTSNLACGDDCVSIQ  340 (409)
Q Consensus       313 DG-I~l~-~s~nV~I~n~~i~~gDD~Iai~  340 (409)
                      || |++. .+.+|||.+|.|...+.++-++
T Consensus       184 DgllDi~~~s~~VTiS~n~f~~h~k~~LiG  213 (361)
T 1pe9_A          184 DGALDIKRGSDYVTISNSLIDQHDKTMLIG  213 (361)
T ss_dssp             CCSEEECTTCEEEEEESCEEEEEEECEEES
T ss_pred             cceeeeecCCCcEEEEeeEEcCCCceeEec
Confidence            54 4453 5778888888887544444343

>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP}

Probab=97.55  E-value=0.00042  Score=70.26  Aligned_cols=78  Identities=12%  Similarity=0.162  Sum_probs=56.9

Q ss_pred             eEEEEeeeeEEEeceEEecC-------------------CCCeEEeecCccEEEEeEEEeCCCC------------CCCC
Q 015319          264 ALRFYGSFNVTVTGITIQNS-------------------PQCHLKFDNCIGVVVHDVSVSSPGD------------SPNT  312 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns-------------------~~~~i~~~~~~nV~I~n~~I~s~~~------------~~n~  312 (409)
                      .|.+.+++||.|++|+|.+.                   ...+|.+..+++|.|++|++....+            ....
T Consensus       149 gl~i~~~~NVIIrNl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~Gr~~~~~  228 (416)
T 1vbl_A          149 GFLIKNVDNVIIRNIEFEAPLDYFPEWDPTDGTLGEWNSEYDSISIEGSSHIWIDHNTFTDGDHPDRSLGTYFGRPFQQH  228 (416)
T ss_dssp             EEEEESCEEEEEESCEEECCCCSSCEEETTSTTTCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCC
T ss_pred             EEEeecCceEEEeCeEEEcCccccccccccccccccccCCCceEEecCCceEEEEccEEecCCCcccccccccCcceeec
Confidence            57778999999999999764                   2345889999999999999986321            0124


Q ss_pred             Cc-eeec-CcccEEEEeeEEeeCCCeEEeCC
Q 015319          313 DG-IHLQ-NSKDVLIHTSNLACGDDCVSIQT  341 (409)
Q Consensus       313 DG-I~l~-~s~nV~I~n~~i~~gDD~Iai~s  341 (409)
                      || +++. .+.+|||.+|.|...+.++-++.
T Consensus       229 DGl~Di~~~s~~VTISnn~f~~h~k~~LiG~  259 (416)
T 1vbl_A          229 DGALDIKNSSDFITISYNVFTNHDKVTLIGA  259 (416)
T ss_dssp             CCSEEEESSCEEEEEESCEEEEEEECCEECS
T ss_pred             ccceeeecCCCcEEEEeeEEcCCCceeEeCC
Confidence            65 3454 68899999999986554444443

>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A*

Probab=97.47  E-value=0.0005  Score=68.99  Aligned_cols=111  Identities=6%  Similarity=0.108  Sum_probs=83.7

Q ss_pred             eeEEEeceEEecC-----C------CCeEEeec-CccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEE
Q 015319          271 FNVTVTGITIQNS-----P------QCHLKFDN-CIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVS  338 (409)
Q Consensus       271 ~nv~I~gvti~ns-----~------~~~i~~~~-~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Ia  338 (409)
                      .+|+|++++|++.     .      .-+|.+.. ++++.|+++.|..     +.-||.++.+++++|+++.|.....||.
T Consensus       136 s~V~~~~v~I~G~~~~~~G~s~~~~dAGI~v~~~~d~~~I~nn~i~~-----~~fGI~l~~a~~~~I~~N~I~e~GNgI~  210 (410)
T 2inu_A          136 SGIVFRDFCLDGVGFTPGKNSYHNGKTGIEVASDNDSFHITGMGFVY-----LEHALIVRGADALRVNDNMIAECGNCVE  210 (410)
T ss_dssp             ECCEEESCEEECCCCSSSTTSCCCSCEEEEECSCEESCEEESCEEES-----CSEEEEETTEESCEEESCEEESSSEEEE
T ss_pred             CCcEECCEEEECCEeecCCCCcccCceeEEEeccCCeEEEECCEEec-----ccEEEEEccCCCcEEECCEEEecCCcee
Confidence            6677777777766     3      22477775 8899999999999     7789999999999999999997678899


Q ss_pred             eCCCceeEEEEEEEEcC---CCeeEEEecCCCCCCCcEEEEEEEeEEE-ecccceEEEEee
Q 015319          339 IQTGCSNVYVHNVNCGP---GHGISIGSLGKDNTKACVSNITVRDVMM-HNTMNGVRIKTW  395 (409)
Q Consensus       339 i~sg~~nV~I~n~~~~~---g~GisIGs~g~~~~~~~v~nI~v~n~~~-~~~~~Gi~Ikt~  395 (409)
                      +...++...|+|+.+..   |+||.+..         ..+.+|++|++ .+...||.+..-
T Consensus       211 L~G~~~~~~I~~N~i~~~~dG~gIyl~n---------s~~~~I~~N~i~~~~R~gIh~m~s  262 (410)
T 2inu_A          211 LTGAGQATIVSGNHMGAGPDGVTLLAEN---------HEGLLVTGNNLFPRGRSLIEFTGC  262 (410)
T ss_dssp             ECSCEESCEEESCEEECCTTSEEEEEES---------EESCEEESCEECSCSSEEEEEESC
T ss_pred             eccccccceEecceeeecCCCCEEEEEe---------CCCCEEECCCcccCcceEEEEEcc
Confidence            98867888888988886   33455542         45666666655 446677776543

>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9

Probab=97.47  E-value=0.00027  Score=71.38  Aligned_cols=92  Identities=7%  Similarity=0.009  Sum_probs=70.7

Q ss_pred             eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCc-ccEEEEeeEEeeC---------
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNS-KDVLIHTSNLACG---------  333 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s-~nV~I~n~~i~~g---------  333 (409)
                      .|.+ ...+++|+|++|.|....+|.+.. .+.+|++|+|...    ...||.+... .+.+|++|++...         
T Consensus       109 ~i~i-~~~~~~i~gl~I~n~g~~GI~v~g-s~~~i~n~~i~~n----~~~GI~l~~~~s~n~I~nn~i~~N~d~~~~g~~  182 (400)
T 1ru4_A          109 GFYV-TGDYWYFKGVEVTRAGYQGAYVIG-SHNTFENTAFHHN----RNTGLEINNGGSYNTVINSDAYRNYDPKKNGSM  182 (400)
T ss_dssp             SEEE-CSSCEEEESEEEESCSSCSEEECS-SSCEEESCEEESC----SSCSEEECTTCCSCEEESCEEECCCCTTTTTSS
T ss_pred             EEEE-ECCeEEEEeEEEEeCCCCcEEEeC-CCcEEEeEEEECC----CceeEEEEcccCCeEEEceEEEcccCccccCcc
Confidence            3555 678999999999998877888886 7889999999982    3349999864 4899999998643         


Q ss_pred             CCeEEeCCC-ceeEEEEEEEEcC--CCeeEE
Q 015319          334 DDCVSIQTG-CSNVYVHNVNCGP--GHGISI  361 (409)
Q Consensus       334 DD~Iai~sg-~~nV~I~n~~~~~--g~GisI  361 (409)
                      .|+++++.. .++.+|++|+++.  ..||.+
T Consensus       183 ~dG~~~~~~~g~Gn~~~~~~~~~N~ddGidl  213 (400)
T 1ru4_A          183 ADGFGPKQKQGPGNRFVGCRAWENSDDGFDL  213 (400)
T ss_dssp             CCSEEECTTCCSCCEEESCEEESCSSCSEEC
T ss_pred             cceEEEEecccCCeEEECCEEeecCCCcEEE
Confidence            267887643 3777889998875  345555

>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A*

Probab=97.28  E-value=0.0011  Score=66.90  Aligned_cols=77  Identities=9%  Similarity=0.135  Sum_probs=53.5

Q ss_pred             eEEEEeeeeEEEeceEEecC-------------------CCCeEEeecCccEEEEeEEEeCCCC------------CCCC
Q 015319          264 ALRFYGSFNVTVTGITIQNS-------------------PQCHLKFDNCIGVVVHDVSVSSPGD------------SPNT  312 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns-------------------~~~~i~~~~~~nV~I~n~~I~s~~~------------~~n~  312 (409)
                      .|.+.. +||.|++|+|.+.                   ...+|.+..+++|.|++|++....+            ....
T Consensus       144 gl~i~~-~NVIIrnl~i~~~~~~~p~~~p~~~~~~~~~~~~DaI~i~~s~nVWIDHcs~s~~~~~d~~~~~~~G~~~~~~  222 (399)
T 2o04_A          144 NFQIKS-DNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHH  222 (399)
T ss_dssp             EEEECS-EEEEEESCEEECCCCSSCEEETTSSTTCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGSCEETTEECCCC
T ss_pred             EEEeeC-CCEEEeCeEEecCccccccccccccccccccCCCCeEEecCCCcEEEEeeeeecCCCccccccccccceeecc
Confidence            466777 8999999999753                   1245888899999999999986321            0124


Q ss_pred             Cce-eec-CcccEEEEeeEEeeCCCeEEeCC
Q 015319          313 DGI-HLQ-NSKDVLIHTSNLACGDDCVSIQT  341 (409)
Q Consensus       313 DGI-~l~-~s~nV~I~n~~i~~gDD~Iai~s  341 (409)
                      ||. ++. .+.+|||.+|.|...+.+.-++.
T Consensus       223 Dgl~Di~~~s~~VTISnn~f~~h~k~~LiG~  253 (399)
T 2o04_A          223 DGQTDASNGANYITMSYNYYHDHDKSSIFGS  253 (399)
T ss_dssp             CCSEEEETTCEEEEEESCEEEEEEECCEESC
T ss_pred             ccceeeeccCCcEEEEeeEEcCCCceeEeCC
Confidence            653 554 67899999999986544444443

>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A*

Probab=97.23  E-value=0.011  Score=58.01  Aligned_cols=108  Identities=13%  Similarity=0.048  Sum_probs=71.0

Q ss_pred             eeEEEEe-eeeEEEeceEEecCC------C--C-eEEee-cCccEEEEeEEEeCCCCCCCCCceeecC-------cccEE
Q 015319          263 TALRFYG-SFNVTVTGITIQNSP------Q--C-HLKFD-NCIGVVVHDVSVSSPGDSPNTDGIHLQN-------SKDVL  324 (409)
Q Consensus       263 ~~i~~~~-~~nv~I~gvti~ns~------~--~-~i~~~-~~~nV~I~n~~I~s~~~~~n~DGI~l~~-------s~nV~  324 (409)
                      .+|.+.+ ++||-|+.++|..+.      .  . .+++. .+++|+|.++.|...+.     +.-+..       -.+|+
T Consensus       121 DaI~i~~~s~nVWIDH~s~s~~~~g~~~~~~~Dgl~di~~~s~~VTISnn~f~~h~k-----~~LiG~sd~~~~~~~~vT  195 (326)
T 3vmv_A          121 TAIEVTDDSKNVWIDHNEFYSEFPGNGDSDYYDGLVDMKRNAEYITVSWNKFENHWK-----TMLVGHTDNASLAPDKIT  195 (326)
T ss_dssp             CSEEEETTCEEEEEESCEEECCSSTTSCTTSSCCSEEECTTCEEEEEESCEEEEEEE-----CEEECSSSCGGGCCEEEE
T ss_pred             CeEEEecCCCcEEEEeeEEeccccCCcCccccCcceEecCCCceEEEEceEEecCce-----EEEECCCCCCcccCccEE
Confidence            4788886 999999999997542      1  1 24553 58999999999986421     121211       13799


Q ss_pred             EEeeEEeeC-CCeEEeCCCceeEEEEEEEEcC--CCeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          325 IHTSNLACG-DDCVSIQTGCSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       325 I~n~~i~~g-DD~Iai~sg~~nV~I~n~~~~~--g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      ++++.+.+. ...=.+..  -.++|-|+.+.+  .+++..+..         ..|.+|+|+|.+.
T Consensus       196 ~~~N~f~~~~~R~Pr~r~--G~~Hv~NN~~~n~~~~~~~~~~~---------a~v~~e~N~F~~~  249 (326)
T 3vmv_A          196 YHHNYFNNLNSRVPLIRY--ADVHMFNNYFKDINDTAINSRVG---------ARVFVENNYFDNV  249 (326)
T ss_dssp             EESCEEEEEEECTTEEES--CEEEEESCEEEEESSCSEEEETT---------CEEEEESCEEEEE
T ss_pred             EEeeEecCCcCcCCcccC--CcEEEEccEEECCCceEEeecCC---------cEEEEEceEEECC
Confidence            999998642 11112222  267888888876  466665421         4889999999977

>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A*

Probab=96.33  E-value=0.014  Score=60.43  Aligned_cols=121  Identities=10%  Similarity=0.062  Sum_probs=73.8

Q ss_pred             EEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC-------eE
Q 015319          265 LRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD-------CV  337 (409)
Q Consensus       265 i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD-------~I  337 (409)
                      +....+.+.+|++-++.++. .++.+..+.+.+|++..|........+-||.+.++.+ +|+|+.|...+.       +|
T Consensus       246 im~skS~~n~i~~N~~~~~~-ggi~l~~~~~s~I~~N~f~gN~~~~~~~Gi~i~~~~~-~I~nN~f~~~~g~~~~~~~GI  323 (506)
T 1dbg_A          246 IITSKSQENVYYGNTYLNCQ-GTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWGSRH-VIACNYFELSETIKSRGNAAL  323 (506)
T ss_dssp             EEEEESBSCEEESCEEESCS-SEEEEEECSSCEEESCEEEECSSSSCBCCEEECSBSC-EEESCEEEESSBCGGGTSEEE
T ss_pred             EEEEecCCEEEECCEEEccc-CcEEEeecCccEEECCEEECCcCccCceEEEEECCCC-EEECCEEECCcCccccccccE
Confidence            33334445566766666663 3677777777777777776521101145777766655 788887776543       77


Q ss_pred             EeCCCc--------eeEEEEEEEEcCC-C-eeEEEe---------cCCCCCCCcEEEEEEEeEEEeccc
Q 015319          338 SIQTGC--------SNVYVHNVNCGPG-H-GISIGS---------LGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       338 ai~sg~--------~nV~I~n~~~~~g-~-GisIGs---------~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      .+..|+        +++.|.+++|.+. . ||.|+.         .|++.....-.|++|.|+.|.+..
T Consensus       324 ~i~~G~~~~~~~~~~~~~I~~Ntfi~n~~~gI~~~~~~~~~~~~~~g~~~~~~~p~~~~~~nN~i~~~~  392 (506)
T 1dbg_A          324 YLNPGAMASEHALAFDMLIANNAFINVNGYAIHFNPLDERRKEYCAANRLKFETPHQLMLKGNLFFKDK  392 (506)
T ss_dssp             EECCBCTTSTTCCCBSEEEESCEEESCSSEEEESSTTHHHHHHHHHHTTCCCBCCCSEEEESCEEECCS
T ss_pred             EEecCCCccccccccCcEEECCEEECCccccEEEcccccccccccccccccccCCCcEEEEccEEEcCC
Confidence            777655        6888888877764 3 777770         122222244567888888777654

>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A*

Probab=96.27  E-value=0.012  Score=59.42  Aligned_cols=71  Identities=21%  Similarity=0.282  Sum_probs=52.5

Q ss_pred             eEEEEeeeeEEEe-ceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecC------------cccEEEEeeEE
Q 015319          264 ALRFYGSFNVTVT-GITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN------------SKDVLIHTSNL  330 (409)
Q Consensus       264 ~i~~~~~~nv~I~-gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~------------s~nV~I~n~~i  330 (409)
                      .+++..|+++++. +|.+.         ++|+||+|.||.|+.     .+|.|.+.+            |++|.      
T Consensus       197 TIhPi~Cqnvt~r~gL~f~---------eSCrNV~IsnC~FsV-----GDdciaiksGk~~~~~~~~~~se~~~------  256 (514)
T 2vbk_A          197 HSKFIACQAGTCRVGLHFL---------GQCVSVSVSSCHFSR-----GNYSADESFGIRIQPQTYAWSSEAVR------  256 (514)
T ss_dssp             EEEEESCEEEEEEEEEEEE---------SCCEEEEEESCEEEC-----TTSCCTTCEEEEEECBCCTTTSSCBC------
T ss_pred             EEeEeccCceecccCcccc---------CCCCeEEEeccEEec-----CcceeeeecCceecccccCCcchhcc------
Confidence            4677788888877 66664         389999999999999     677777753            45555      


Q ss_pred             eeCCCeEEeCC-----Ccee-EEEEEEEEcCCC
Q 015319          331 ACGDDCVSIQT-----GCSN-VYVHNVNCGPGH  357 (409)
Q Consensus       331 ~~gDD~Iai~s-----g~~n-V~I~n~~~~~g~  357 (409)
                         ..+|.+++     |.+| |+|++|.+....
T Consensus       257 ---hgav~igSE~m~~Gvk~~v~v~~Clf~~td  286 (514)
T 2vbk_A          257 ---SEAIILDSETMCIGFKNAVYVHDCLDLHME  286 (514)
T ss_dssp             ---CEEEEEESSEEEESCSEEEEESCCEEEEEE
T ss_pred             ---cccEEECchhhcccccccEEEEeeeccCCc
Confidence               34566665     3688 999999877643

>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12}

Probab=95.93  E-value=0.09  Score=53.05  Aligned_cols=108  Identities=12%  Similarity=0.132  Sum_probs=71.8

Q ss_pred             EEEEeeeeEEEeceEEecCCCC----------eEEeecCccEEEEeEEEeCCCCCCCCCceeec-----------CcccE
Q 015319          265 LRFYGSFNVTVTGITIQNSPQC----------HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-----------NSKDV  323 (409)
Q Consensus       265 i~~~~~~nv~I~gvti~ns~~~----------~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-----------~s~nV  323 (409)
                      ..+..++++.+++|+|+|....          .+. ...+.+.+.+|.|..     ..|=+...           ....-
T Consensus       195 T~~V~g~~F~a~niTf~Ntag~~~~~~~~QAVAL~-v~gDr~~fy~C~f~G-----~QDTLy~~~~~~~~~~~~d~~gRq  268 (422)
T 3grh_A          195 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALR-TDGDQVQINNVNILG-----RQNTFFVTNSGVQNRLETNRQPRT  268 (422)
T ss_dssp             SEEECCTTCEEEEEEEEETTGGGSCSSCCCCCSEE-ECCSSEEEEEEEEEC-----STTCEEECCCCTTCSCCSSCCCEE
T ss_pred             EEEEECCCEEEEeeEEEeCCCCCCCCCCCceEEEE-ecCCcEEEEeeEEEe-----ecceeeeccccccccccccccccE
Confidence            3445678999999999988432          133 467899999999998     45555442           23467


Q ss_pred             EEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC-C-----Ce-eEEEecCCCCCCCcEEEEEEEeEEEec
Q 015319          324 LIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP-G-----HG-ISIGSLGKDNTKACVSNITVRDVMMHN  385 (409)
Q Consensus       324 ~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~-g-----~G-isIGs~g~~~~~~~v~nI~v~n~~~~~  385 (409)
                      ..++|+|...-|=|. +.  -..+|++|++.. .     .| |.-.+.    ....-.-+.|.||+|..
T Consensus       269 yy~~CyIeGtVDFIF-G~--a~AvFe~C~I~s~~~~~~~~g~ITA~~t----~~~~~~Gfvf~nC~ita  330 (422)
T 3grh_A          269 LVTNSYIEGDVDIVS-GR--GAVVFDNTEFRVVNSRTQQEAYVFAPAT----LSNIYYGFLAVNSRFNA  330 (422)
T ss_dssp             EEESCEEEESEEEEE-ES--SEEEEESCEEEECCSSCSSCCEEEEECC----BTTCCCCEEEESCEEEE
T ss_pred             EEEecEEeccccEEc-cC--ceEEEEeeEEEEecCCCCCceEEEecCC----CCCCCCEEEEECCEEEe
Confidence            889999987655443 32  467899998874 1     23 444322    12223568999999984

>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5

Probab=94.55  E-value=0.21  Score=48.74  Aligned_cols=84  Identities=10%  Similarity=0.175  Sum_probs=64.8

Q ss_pred             eecCccEEEEeEEEeCCCCC--CCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEEecCCC
Q 015319          290 FDNCIGVVVHDVSVSSPGDS--PNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKD  367 (409)
Q Consensus       290 ~~~~~nV~I~n~~I~s~~~~--~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIGs~g~~  367 (409)
                      ....++++++|++|.+....  ..+-+|.+ .+.++.++||.|....|.+..+.+ + .+++||.+.+.-.+=+|..   
T Consensus        90 ~v~a~~f~~~nlt~~Nt~g~~~~qAvAl~v-~~d~~~f~~c~f~g~QDTLy~~~~-r-~~~~~c~I~G~vDFIfG~~---  163 (319)
T 1gq8_A           90 AAVGAGFLARDITFQNTAGAAKHQAVALRV-GSDLSAFYRCDILAYQDSLYVHSN-R-QFFINCFIAGTVDFIFGNA---  163 (319)
T ss_dssp             EECSTTCEEEEEEEEECCCGGGCCCCSEEE-CCTTEEEEEEEEECSTTCEEECSS-E-EEEESCEEEESSSCEEESC---
T ss_pred             EEECCCEEEEEeEeEccCCCcCCceEEEEe-cCCcEEEEEeEECccceeeeecCc-c-EEEEecEEEeeeeEEecCC---
Confidence            34689999999999986422  24456666 468899999999998899988874 3 5999999998766666642   


Q ss_pred             CCCCcEEEEEEEeEEEecc
Q 015319          368 NTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       368 ~~~~~v~nI~v~n~~~~~~  386 (409)
                             ..+|+||+++..
T Consensus       164 -------~a~f~~c~i~~~  175 (319)
T 1gq8_A          164 -------AVVLQDCDIHAR  175 (319)
T ss_dssp             -------EEEEESCEEEEC
T ss_pred             -------cEEEEeeEEEEe
Confidence                   488999998853

>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum}

Probab=94.53  E-value=0.15  Score=49.66  Aligned_cols=84  Identities=6%  Similarity=0.155  Sum_probs=65.0

Q ss_pred             eecCccEEEEeEEEeCCCCC--CCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEEecCCC
Q 015319          290 FDNCIGVVVHDVSVSSPGDS--PNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGSLGKD  367 (409)
Q Consensus       290 ~~~~~nV~I~n~~I~s~~~~--~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIGs~g~~  367 (409)
                      ...+++++++|++|.+....  ..+-++.+ .+.++.++||.|....|.+..+.+ + .+++||.+++.-.+=+|..   
T Consensus        86 ~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v-~~d~~~f~~c~f~g~QDTLy~~~~-r-~~~~~c~I~G~vDFIfG~~---  159 (317)
T 1xg2_A           86 AAVGQGFILQDICIQNTAGPAKDQAVALRV-GADMSVINRCRIDAYQDTLYAHSQ-R-QFYRDSYVTGTVDFIFGNA---  159 (317)
T ss_dssp             EECSTTCEEESCEEEECCCGGGCCCCSEEE-CCTTEEEESCEEECSTTCEEECSS-E-EEEESCEEEESSSCEEECC---
T ss_pred             EEECCCEEEEEeEEecccCCccCceEEEEE-eCCcEEEEEeEeCccccceeecCc-c-EEEEeeEEEeceeEEcCCc---
Confidence            34789999999999986432  24456666 468899999999998899988875 3 4999999998766666642   


Q ss_pred             CCCCcEEEEEEEeEEEecc
Q 015319          368 NTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       368 ~~~~~v~nI~v~n~~~~~~  386 (409)
                             ..+|+||+++..
T Consensus       160 -------~avf~~c~i~~~  171 (317)
T 1xg2_A          160 -------AVVFQKCQLVAR  171 (317)
T ss_dssp             -------EEEEESCEEEEC
T ss_pred             -------eEEEeeeEEEEe
Confidence                   488999998853

>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A

Probab=94.01  E-value=0.33  Score=47.72  Aligned_cols=82  Identities=5%  Similarity=0.099  Sum_probs=62.7

Q ss_pred             cCccEEEEeEEEeCCCC----------------CCCCCceee-cCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEc
Q 015319          292 NCIGVVVHDVSVSSPGD----------------SPNTDGIHL-QNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCG  354 (409)
Q Consensus       292 ~~~nV~I~n~~I~s~~~----------------~~n~DGI~l-~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~  354 (409)
                      .+++++++|++|.+...                ...+-++.+ ..+.++.++||.|...-|.+..+.+  ..+++||.++
T Consensus        94 ~a~~f~a~nlt~~Nt~~~~~~~~~~~~~~~~~~~~QAvAl~v~v~~d~~~f~~c~f~G~QDTLy~~~g--r~~~~~c~I~  171 (342)
T 2nsp_A           94 SAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQATLYVSGG--RSFFSDCRIS  171 (342)
T ss_dssp             CSBSCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCBSEEEEEEEEECSTTCEEECSS--EEEEESCEEE
T ss_pred             ECCCEEEEeeEEEccccccccccccccCCccccCCceEEEEEeeccCcEEEEeeEEecccceEEECCC--CEEEEcCEEE
Confidence            47899999999998641                112234521 3478999999999998899988864  7899999999


Q ss_pred             CCCeeEEEecCCCCCCCcEEEEEEEeEEEec
Q 015319          355 PGHGISIGSLGKDNTKACVSNITVRDVMMHN  385 (409)
Q Consensus       355 ~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~  385 (409)
                      +.-.+=+|..          ..+|+||+++-
T Consensus       172 G~vDFIFG~a----------~a~f~~c~i~~  192 (342)
T 2nsp_A          172 GTVDFIFGDG----------TALFNNCDLVS  192 (342)
T ss_dssp             ESEEEEEESS----------EEEEESCEEEE
T ss_pred             eceEEEeCCc----------eEEEecCEEEE
Confidence            8877777752          57888888874

>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii}

Probab=92.91  E-value=3.7  Score=36.80  Aligned_cols=126  Identities=14%  Similarity=0.029  Sum_probs=77.8

Q ss_pred             eeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEE
Q 015319          271 FNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHN  350 (409)
Q Consensus       271 ~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n  350 (409)
                      .+.+|+++.|-....-+||..  -+.+|+|+....    --.|.+.+.++..++|.+.-..+.+|=|.-..+.-.+.|+|
T Consensus        52 ~GaTLkNvIIG~~~~dGIHC~--G~ctl~NVwwed----VcEDA~T~kg~g~~~I~GGgA~~A~DKV~Q~Ng~Gtv~I~n  125 (196)
T 3t9g_A           52 KGANLKNVIIGAPGCDGIHCY--GDNVVENVVWED----VGEDALTVKSEGVVEVIGGSAKEAADKVFQLNAPCTFKVKN  125 (196)
T ss_dssp             TTCEEEEEEECSCCTTCEEEC--SSEEEEEEEESS----CCSCSEEECSSEEEEEESCEEEEEEEEEEEECSSEEEEEEE
T ss_pred             CCCEEEEEEECCCCcCcEEEc--CCEeEEEEEeee----eeceeeEEcCCCeEEEECCCccCCCceEEEECCCceEEEee
Confidence            355788888866666667764  356788887776    46777777766677888887777766665555667777877


Q ss_pred             EEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEE
Q 015319          351 VNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCY  406 (409)
Q Consensus       351 ~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~  406 (409)
                      ....+ .|--+-|.|.   ..+=++|.++|+++.+....|.=.--.+......|+.
T Consensus       126 F~~~~-~GKl~RSCGn---c~~~r~v~i~~v~~~n~k~~l~rtdS~~~~~~~~n~~  177 (196)
T 3t9g_A          126 FTATN-IGKLVRQNGN---TTFKVVIYLEDVTLNNVKSCVAKSDSPVSELWYHNLN  177 (196)
T ss_dssp             EEEEE-EEEEEEECTT---CCSCEEEEEEEEEEEEEEEEEEECCCTTCEEEEEEEE
T ss_pred             EEEcc-CCEEEEcCCC---CCceeEEEEeCeEEeCCEEEEEEcCCCCCEEEEecce
Confidence            76553 4433333331   1234788888888887644432222233434444443

>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp}

Probab=91.34  E-value=1.1  Score=44.41  Aligned_cols=84  Identities=14%  Similarity=0.122  Sum_probs=64.2

Q ss_pred             ecCccEEEEeEEEeCCCC----------------CCCCCceeec-CcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEE
Q 015319          291 DNCIGVVVHDVSVSSPGD----------------SPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNC  353 (409)
Q Consensus       291 ~~~~nV~I~n~~I~s~~~----------------~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~  353 (409)
                      ...++++++|++|.+...                ...+-++.+. .+.++.++||.|....|.+..+. ....++++|.+
T Consensus       119 V~a~~f~a~nitf~Nt~~~~~~~~~~~~~p~~~~~~QAvAl~v~~~~D~~~f~~C~f~G~QDTLy~~~-~gr~yf~~c~I  197 (364)
T 3uw0_A          119 VNAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKT-GSRSYFSDCEI  197 (364)
T ss_dssp             ECSTTCEEEEEEEEECCCHHHHHHSCTTCTTCCSCCCCCSEEECTTCEEEEEEEEEEECSBSCEEECT-TCEEEEESCEE
T ss_pred             EECCCEEEEeeeeEcCCcccccccccccccccccCCccEEEEEecCCCeEEEEeeEEEecccceEeCC-CCCEEEEcCEE
Confidence            356799999999998642                1223355554 47889999999999889998873 35889999999


Q ss_pred             cCCCeeEEEecCCCCCCCcEEEEEEEeEEEec
Q 015319          354 GPGHGISIGSLGKDNTKACVSNITVRDVMMHN  385 (409)
Q Consensus       354 ~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~  385 (409)
                      ++.-.+=+|..          ..+|+||+++-
T Consensus       198 ~GtvDFIFG~a----------~a~f~~c~i~~  219 (364)
T 3uw0_A          198 SGHVDFIFGSG----------ITVFDNCNIVA  219 (364)
T ss_dssp             EESEEEEEESS----------EEEEESCEEEE
T ss_pred             EcCCCEECCcc----------eEEEEeeEEEE
Confidence            99888877752          67888888874

>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1

Probab=89.14  E-value=5.5  Score=35.76  Aligned_cols=124  Identities=10%  Similarity=0.071  Sum_probs=75.7

Q ss_pred             eeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEE
Q 015319          271 FNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHN  350 (409)
Q Consensus       271 ~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n  350 (409)
                      .+.+|+++.|-....-+||...  +.+|+|+....    --.|.+.+.++..++|.+.-..+.+|=|.-..+.-.+.|+|
T Consensus        48 ~GaTLkNvIIG~~~~dGIHC~G--~CtleNVwwed----VcEDA~T~k~~g~~~I~GGgA~~A~DKV~Q~Ng~Gtv~I~n  121 (197)
T 1ee6_A           48 AGASLKNVVIGAPAADGVHCYG--DCTITNVIWED----VGEDALTLKSSGTVNISGGAAYKAYDKVFQINAAGTINIRN  121 (197)
T ss_dssp             TTEEEEEEEECSSCTTCEEEES--CEEEEEEEESS----CCSCSEEEEESEEEEEESCEEEEEEEEEEEECSSEEEEEES
T ss_pred             CCCEEEEEEEcCCCcccEEEcC--ceeEEEEEeee----ccccccEEcCCCeEEEECCCccCCCccEEEecCCceEEEee
Confidence            3567888888666666777654  46777777776    46677777666667777777766666655555566677777


Q ss_pred             EEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEE
Q 015319          351 VNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQ  404 (409)
Q Consensus       351 ~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~  404 (409)
                      ..... .|==.-|.|.   ...-++|.++|+++.+....|.+....|....+.|
T Consensus       122 F~~~~-~GKl~RScGn---c~~~r~v~i~~v~~~~~k~~i~~~ds~gdtati~n  171 (197)
T 1ee6_A          122 FRADD-IGKLVRQNGG---TTYKVVMNVENCNISRVKDAILRTDSSTSTGRIVN  171 (197)
T ss_dssp             CEEEE-EEEEEEECTT---CCSCEEEEEESCEEEEEEEEEEECCCTTCEEEEES
T ss_pred             EEEcc-CCEEEEcCCC---CccceEEEEeceEEECceEEEEEecCCCCEEEEEe
Confidence            55432 3311222221   11237899999988886555544444555444443

>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A

Probab=88.23  E-value=20  Score=34.84  Aligned_cols=16  Identities=25%  Similarity=0.385  Sum_probs=11.8

Q ss_pred             CeeeeeceEEeCCCccc
Q 015319          200 GITIQGKGIIDGRGSVW  216 (409)
Q Consensus       200 nVtI~G~G~IdG~G~~~  216 (409)
                      +.+|.| +++||.+..|
T Consensus       124 ~~~i~g-~t~Dgg~k~~  139 (344)
T 3b4n_A          124 GATFEN-RTVDCGGVTI  139 (344)
T ss_dssp             TEEEES-SEEECTTCEE
T ss_pred             ceeEec-ceEcCCCcEE
Confidence            456776 6889998775

>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii}

Probab=88.01  E-value=2.9  Score=37.45  Aligned_cols=42  Identities=14%  Similarity=0.137  Sum_probs=23.4

Q ss_pred             eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeC
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSS  305 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s  305 (409)
                      ++.|.+...++|.|--.+++..--+....+-.+.|.|+++..
T Consensus        89 A~T~kg~g~~~I~GGgA~~A~DKV~Q~Ng~Gtv~I~nF~~~~  130 (196)
T 3t9g_A           89 ALTVKSEGVVEVIGGSAKEAADKVFQLNAPCTFKVKNFTATN  130 (196)
T ss_dssp             SEEECSSEEEEEESCEEEEEEEEEEEECSSEEEEEEEEEEEE
T ss_pred             eeEEcCCCeEEEECCCccCCCceEEEECCCceEEEeeEEEcc
Confidence            444444445566666665554444555566666666666543

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=84.17  E-value=0.31  Score=48.97  Aligned_cols=40  Identities=28%  Similarity=0.340  Sum_probs=28.9

Q ss_pred             ccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCc
Q 015319          115 FGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPM  157 (409)
Q Consensus       115 ~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i  157 (409)
                      =||+|||++|||+|+.+|++++.   ++.++=-.|.||.+..|
T Consensus         4 ~~a~gdgvtddt~a~~~~l~~~~---~~~~IDG~G~T~kVs~l   43 (670)
T 3ju4_A            4 GSAKGDGVTDDTAALTSALNDTP---VGQKINGNGKTYKVTSL   43 (670)
T ss_dssp             CCCCCEEEEECHHHHHHHHHHSC---TTSCEECTTCEEECSSC
T ss_pred             CcccCCCccCcHHHHHHHhccCC---CCeEEeCCCceEEeeeC
Confidence            48999999999999999997643   33444445556665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	409
d1rmga_	422	b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a	2e-53
d1czfa_	335	b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill	6e-45
d1ogmx2	373	b.80.1.10 (X:202-574) Dextranase, catalytic domain	3e-44
d1ia5a_	339	b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill	8e-39
d1bhea_	376	b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor	1e-38
d1k5ca_	333	b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p	5e-38
d1nhca_	336	b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill	1e-34
d1hg8a_	349	b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo	6e-33

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  181 bits (459), Expect = 2e-53
 Identities = 59/289 (20%), Positives = 114/289 (39%), Gaps = 51/289 (17%)

Query: 107 SSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQA 166
           +   N+  +GA  +  +D   A  +AW AACK    ++ +P+ +  L   ++ +G     
Sbjct: 18  TKTCNILSYGAVADNSTDVGPAITSAW-AACK-SGGLVYIPSGNYALNTWVTLTGGS--- 72

Query: 167 NIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPI 226
               QLDG I     +      ++   D T  +  +   KG + G G V+  +  Y    
Sbjct: 73  ATAIQLDGIIYRTGTASGN---MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTYG--- 126

Query: 227 DDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQC 286
                                                 LR     + +V  I + ++P  
Sbjct: 127 -----------------------------------ARILRLTDVTHFSVHDIILVDAPAF 151

Query: 287 HLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNV 346
           H   D C    V+++++    +    DGI +  S ++ +H   +   D+CV++++  +N+
Sbjct: 152 HFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNI 209

Query: 347 YVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTW 395
            V ++ C    G ++GSLG D     V++I  R+V   ++     IK+ 
Sbjct: 210 LVESIYCNWSGGCAMGSLGADTD---VTDIVYRNVYTWSSNQMYMIKSN 255

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

 Score =  156 bits (396), Expect = 6e-45
 Identities = 65/293 (22%), Positives = 109/293 (37%), Gaps = 57/293 (19%)

Query: 121 GVSDDTKAFEAAWAAAC-KVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAP 179
             +  T A   A  A C  +  + + VPA +         +G      +IF+  GT    
Sbjct: 2   SCTFTTAAAAKAGKAKCSTITLNNIEVPAGTTLD-----LTGLTSGTKVIFE--GTTTFQ 54

Query: 180 TGSKDWGKGLLWWLDFTKLKGITIQGKG--IIDGRGSVWWQDYPYDDPIDDESKLIIPLH 237
              ++W       L     + IT+ G    +I+  G+ WW                    
Sbjct: 55  Y--EEWAG----PLISMSGEHITVTGASGHLINCDGARWWDGK----------------- 91

Query: 238 NNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVV 297
                            G     KP     +G  + ++TG+ I+N+P           + 
Sbjct: 92  -----------------GTSGKKKPKFFYAHGLDSSSITGLNIKNTPLMAFSV-QANDIT 133

Query: 298 VHDVSVSSP----GDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNC 353
             DV++++         NTD   + NS  V I    +   DDC+++ +   N++     C
Sbjct: 134 FTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNS-GENIWFTGGTC 192

Query: 354 GPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCY 406
             GHG+SIGS+G D +   V N+T+    + N+ N VRIKT      S ++  
Sbjct: 193 IGGHGLSIGSVG-DRSNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEIT 244

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

 Score =  156 bits (394), Expect = 3e-44
 Identities = 32/290 (11%), Positives = 69/290 (23%), Gaps = 37/290 (12%)

Query: 115 FGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG 174
            G   +   D+T+             A  ++     V+ +            +     + 
Sbjct: 3   SGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMNQDQSGN-----SGKLGSNH 57

Query: 175 TIIAPTGSKDWGKGLLW---WLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESK 231
             +       +     +    +++   +     G GI+ G   V+  +        D   
Sbjct: 58  IRLNSNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENYVYQANA------GDNYI 111

Query: 232 LIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFD 291
            +     +                             G       G TI   P   + F+
Sbjct: 112 AVKSDSTSLRM-------------------WWHNNLGGGQTWYCVGPTINAPPFNTMDFN 152

Query: 292 NCIGVVVHDVSVSS-PGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVY-VH 349
              G+                TDG  +    + ++H       DD + I    ++V    
Sbjct: 153 GNSGISSQISDYKQVGAFFFQTDGPEI--YPNSVVHDVFWHVNDDAIKIYYSGASVSRAT 210

Query: 350 NVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMI 399
              C     I +G   +D +   +  + V       +   V         
Sbjct: 211 IWKCHNDPIIQMGWTSRDISGVTIDTLNVIHTRYIKSETVVPSAIIGASP 260

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

 Score =  140 bits (353), Expect = 8e-39
 Identities = 65/289 (22%), Positives = 104/289 (35%), Gaps = 51/289 (17%)

Query: 123 SDDTKAFEAAWAAAC-KVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTG 181
             +  +  +    +C  +  S + VP+ +         +      ++IF  + T     G
Sbjct: 8   GSNGASSASKSKTSCSTIVLSNVAVPSGTTLD-----LTKLNDGTHVIFSGETTF----G 58

Query: 182 SKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTL 241
            K+W  G L  +  + L  IT      I+G GS WW                        
Sbjct: 59  YKEWS-GPLISVSGSDLT-ITGASGHSINGDGSRWWDGE--------------------- 95

Query: 242 PYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDV 301
                        G     KP     +   N  ++G+ I NSP           + + D+
Sbjct: 96  ------------GGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDI 143

Query: 302 SV----SSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGH 357
           ++           NTD   +  S  V I  + +   DDCV++ +   N+Y     C  GH
Sbjct: 144 TIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNS-GENIYFSGGYCSGGH 202

Query: 358 GISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCY 406
           G+SIGS+G   +   V N+T  D  + N+ NGVRIKT      S +   
Sbjct: 203 GLSIGSVGG-RSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVT 250

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score =  140 bits (354), Expect = 1e-38
 Identities = 83/325 (25%), Positives = 132/325 (40%), Gaps = 67/325 (20%)

Query: 99  DVPPPSHHSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPA--ESVFLVGP 156
            V  P   SS   +K         S  T   + A     +     + + A   SVFL GP
Sbjct: 5   TVSEPKTPSSCTTLKADS------STATSTIQKALNNCDQ--GKAVRLSAGSTSVFLSGP 56

Query: 157 MSFSGPYCQANIIFQLD--GTIIAPTGSKDW-------------GKGLLWWLDFTKLKGI 201
           +S       + +   +D   T+ A   +K +             GKG   ++        
Sbjct: 57  LSL-----PSGVSLLIDKGVTLRAVNNAKSFENAPSSCGVVDKNGKGCDAFITAVSTTNS 111

Query: 202 TIQGKGIIDGRGSVWWQD---YPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMP 258
            I G G IDG+G V  QD     ++   D + K                        K+ 
Sbjct: 112 GIYGPGTIDGQGGVKLQDKKVSWWELAADAKVK------------------------KLK 147

Query: 259 SIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ 318
              P  ++   S N T+  +++ NSP  H+ F +  G      ++ +P  + NTDGI   
Sbjct: 148 QNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPM 207

Query: 319 NSKDVLIHTSNLACGDDCVSIQTG-----CSNVYVHNVNCGPGHGISIGSLGKDNTKACV 373
           +SK++ I  SN+A GDD V+I+         N+ + + + G GHG+SIG     +    V
Sbjct: 208 SSKNITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIG-----SETMGV 262

Query: 374 SNITVRDVMMHNTMNGVRIKTWQVM 398
            N+TV D+ M+ T NG+RIK+ +  
Sbjct: 263 YNVTVDDLKMNGTTNGLRIKSDKSA 287

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

 Score =  137 bits (347), Expect = 5e-38
 Identities = 63/281 (22%), Positives = 98/281 (34%), Gaps = 62/281 (22%)

Query: 127 KAFEAAWA-AAC-KVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKD 184
           K+ + A   A C  V  +   VPA +  ++ P         A +     G I        
Sbjct: 4   KSVDDAKDIAGCSAVTLNGFTVPAGNTLVLNPDKG------ATVTMA--GDITF--AKTT 53

Query: 185 WGKGLLWWLDFTKLKGITIQG-KGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPY 243
              G L+ +D T   GI   G   I DG G+++W     ++                   
Sbjct: 54  L-DGPLFTIDGT---GINFVGADHIFDGNGALYWDGKGTNN-----------------GT 92

Query: 244 KPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNC------IGVV 297
             P P                       + T     + NSP   +            G+ 
Sbjct: 93  HKPHPF-----------------LKIKGSGTYKKFEVLNSPAQAISVGPTDAHLTLDGIT 135

Query: 298 VHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGH 357
           V D +  +     NTDG  +  + +V I    +   DDC++I    +N+   N  C  GH
Sbjct: 136 VDDFAGDTKNLGHNTDGFDVSAN-NVTIQNCIVKNQDDCIAIND-GNNIRFENNQCSGGH 193

Query: 358 GISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVM 398
           GISIGS+        VSN+ ++   +  +M GVRIK  +  
Sbjct: 194 GISIGSIATGK---HVSNVVIKGNTVTRSMYGVRIKAQRTA 231

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

 Score =  128 bits (323), Expect = 1e-34
 Identities = 70/280 (25%), Positives = 107/280 (38%), Gaps = 57/280 (20%)

Query: 126 TKAFEAAWAAACKVEA------SIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAP 179
           T  F +A  A+  + +      S + VPA           S     + I F+  GT    
Sbjct: 2   TCTFTSASEASESISSCSDVVLSSIEVPAGETLD-----LSDAADGSTITFE--GTTSF- 53

Query: 180 TGSKDWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNN 239
            G K+W KG L       L  +T+    +IDG GS WW     +                
Sbjct: 54  -GYKEW-KGPLIRFGGKDLT-VTMADGAVIDGDGSRWWDSKGTN---------------- 94

Query: 240 TLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVH 299
                                KP  +  +   + T  GI I+N+P   +       V ++
Sbjct: 95  -----------------GGKTKPKFMYIHDVEDSTFKGINIKNTPVQAISV-QATNVHLN 136

Query: 300 DVSVSSPGDS----PNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP 355
           D ++ +         NTDG  +  S  V I  + +   DDC++I +   ++      C  
Sbjct: 137 DFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINS-GESISFTGGTCSG 195

Query: 356 GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTW 395
           GHG+SIGS+G       V N+T+ D  + N+ NGVRIKT 
Sbjct: 196 GHGLSIGSVGG-RDDNTVKNVTISDSTVSNSANGVRIKTI 234

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

 Score =  124 bits (312), Expect = 6e-33
 Identities = 52/285 (18%), Positives = 96/285 (33%), Gaps = 54/285 (18%)

Query: 124 DDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSK 183
            +      A ++   +  +   VP      +          Q +      GT      + 
Sbjct: 6   TEYSGLATAVSSCKNIVLNGFQVPTGKQLDLSS-------LQNDSTVTFKGTTTF--ATT 56

Query: 184 DWGKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPY 243
                    +  + +  IT     +IDG G  +W                    +N+   
Sbjct: 57  ADNDFNPIVISGSNIT-ITGASGHVIDGNGQAYWDGK----------------GSNSNSN 99

Query: 244 KPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSV 303
           + P                  +    + N  +T + IQN P           + +  + +
Sbjct: 100 QKPDHFI--------------VVQKTTGNSKITNLNIQNWPVHCFDITGSSQLTISGLIL 145

Query: 304 ------------SSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNV 351
                        S   + NTDG  + +S  V +  +++   DDCV++ +G +N+ V N+
Sbjct: 146 DNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTSG-TNIVVSNM 204

Query: 352 NCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ 396
            C  GHG+SIGS+G   +   V  +      + N+ NG RIK+  
Sbjct: 205 YCSGGHGLSIGSVGG-KSDNVVDGVQFLSSQVVNSQNGCRIKSNS 248

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	100.0
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	100.0
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	100.0
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	100.0
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	100.0
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	100.0
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	100.0
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	100.0
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	99.63
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	99.62
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	99.62
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	99.53
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	99.53
d1h80a_	464	iota-carrageenase {Alteromonas sp., atcc 43554 [Ta	99.5
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	99.36
d1rmga_	422	Rhamnogalacturonase A {Aspergillus aculeatus [TaxI	99.33
d1ogmx2	373	Dextranase, catalytic domain {Penicillium miniolut	99.23
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	98.39
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	98.18
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	98.1
d1ru4a_	400	Pectate transeliminase {Erwinia chrysanthemi [TaxI	98.04
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	97.86
d1o88a_	353	Pectate lyase {Erwinia chrysanthemi, type C [TaxId	97.8
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	97.62
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	97.58
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	97.5
d1qcxa_	359	Pectin lyase {Aspergillus niger, type B [TaxId: 50	97.36
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	97.26
d1bn8a_	399	Pectate lyase {Bacillus subtilis [TaxId: 1423]}	97.2
d1idka_	359	Pectin lyase {Aspergillus niger, type A [TaxId: 50	97.18
d1gq8a_	319	Pectin methylesterase PemA {Carrot (Daucus carota)	97.11
d1pxza_	346	Major pollen allergen Jun a 1 {Ozark white cedar (	97.06
d1pe9a_	361	Pectate lyase {Erwinia chrysanthemi, type A [TaxId	96.28
d1qjva_	342	Pectin methylesterase PemA {Erwinia chrysanthemi [	96.2
d1pcla_	355	Pectate lyase {Erwinia chrysanthemi, type E [TaxId	94.53
d1gq8a_	319	Pectin methylesterase PemA {Carrot (Daucus carota)	87.37
d1ee6a_	197	Pectate lyase {Bacillus sp., strain ksmp15 [TaxId:	85.69
d1ofla_	481	Chondroitinase B {Pedobacter heparinus [TaxId: 984	85.34

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=2.1e-48  Score=396.09  Aligned_cols=250  Identities=22%  Similarity=0.389  Sum_probs=220.4

Q ss_pred             CCceEEEeeccccCCCCCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCccc
Q 015319          106 HSSVFNVKDFGAKGNGVSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDW  185 (409)
Q Consensus       106 ~~~~~~V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~  185 (409)
                      ..++|||+||||+|||++|||+|||+||+ ||+. |++|+||+|+||+..+|.|.+   .+++.|+++|+|+++.....|
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~~-gg~V~iP~Gty~l~~~i~l~g---~~~~~l~~~G~i~~~~~~~~~   91 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAWA-ACKS-GGLVYIPSGNYALNTWVTLTG---GSATAIQLDGIIYRTGTASGN   91 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTB-TCEEEECSSEEEECSCEEEES---CEEEEEEECSEEEECCCCSSE
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHHH-hcCC-CCEEEECCCcEEEeCcEEEcC---CCceEEEEeEEEEeccCCccC
Confidence            46799999999999999999999999996 5764 789999999655677899987   578999999999987765433


Q ss_pred             CCCceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeE
Q 015319          186 GKGLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTAL  265 (409)
Q Consensus       186 ~~g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i  265 (409)
                         ...|..+.+.+++.+.|+|+|||+|..||...                                      ..+|.+|
T Consensus        92 ---~~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~--------------------------------------~~~p~~l  130 (422)
T d1rmga_          92 ---MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEG--------------------------------------TYGARIL  130 (422)
T ss_dssp             ---EEEEEEEEEEEEECSSSCCEEECCTHHHHTTT--------------------------------------CCCCEEE
T ss_pred             ---EEEeccCccEEEEEeecceEEecCcceecCCC--------------------------------------CCCCcEE
Confidence               24455566777788899999999999999653                                      1378899


Q ss_pred             EEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCcee
Q 015319          266 RFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSN  345 (409)
Q Consensus       266 ~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~n  345 (409)
                      +|.+|+|++|++++++|++.|++.+..|++++|+|++|.++ ...|+||||+.+ +||+|+||+|.++||||+++++++|
T Consensus       131 ~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~n  208 (422)
T d1rmga_         131 RLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANN  208 (422)
T ss_dssp             EEEEEEEEEEEEEEEECCSSCSEEEEEEEEEEEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred             EEEeeeeeEEECcEecCCCceEEEEeccccEEEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCcc
Confidence            99999999999999999999999999999999999999986 457999999975 5899999999999999999999999


Q ss_pred             EEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEe
Q 015319          346 VYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYN  407 (409)
Q Consensus       346 V~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~  407 (409)
                      |+|+|++|..+||++|||+|+   ...|+||+|+||++.++.+|++||+|. +.|+|+||..
T Consensus       209 I~i~n~~c~~g~GisiGs~g~---~~~V~nV~v~n~~~~~s~~g~~ik~~~-g~G~V~nI~f  266 (422)
T d1rmga_         209 ILVESIYCNWSGGCAMGSLGA---DTDVTDIVYRNVYTWSSNQMYMIKSNG-GSGTVSNVLL  266 (422)
T ss_dssp             EEEEEEEEESSSEEEEEEECT---TEEEEEEEEEEEEEESSSCSEEEEEBB-CCEEEEEEEE
T ss_pred             EEEEeeEEccccceeEeeccC---CCCEEEEEEEeEEEeCCCceEEEEEcC-CCceecceEE
Confidence            999999999999999999975   356999999999999999999999874 6699998864

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=100.00  E-value=4.7e-46  Score=373.66  Aligned_cols=255  Identities=30%  Similarity=0.408  Sum_probs=217.6

Q ss_pred             CCCccHHHHHHHHHHHhhcCCcEEEECCce--EEEeCCcccCCCccccceEEEec--ceEEcCCCCcccCC---------
Q 015319          121 GVSDDTKAFEAAWAAACKVEASIMVVPAES--VFLVGPMSFSGPYCQANIIFQLD--GTIIAPTGSKDWGK---------  187 (409)
Q Consensus       121 g~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~--~y~~~~i~l~g~~~~s~~~l~l~--Gtl~~~~~~~~~~~---------  187 (409)
                      +.+|||+|||+||++| . +|++|+||+|+  +|+.++|.|     +|+++|+|+  ++|+++++.++|..         
T Consensus        21 ~~~~~T~aIq~AIdac-~-~Gg~V~iP~G~~~vyltg~i~L-----kSnv~L~l~~ga~L~~s~d~~~y~~~~~~~~~~~   93 (376)
T d1bhea_          21 DSSTATSTIQKALNNC-D-QGKAVRLSAGSTSVFLSGPLSL-----PSGVSLLIDKGVTLRAVNNAKSFENAPSSCGVVD   93 (376)
T ss_dssp             CSSBCHHHHHHHHTTC-C-TTCEEEEECSSSSEEEESCEEC-----CTTCEEEECTTCEEEECSCSGGGBSSTTCSSCEE
T ss_pred             CCChhHHHHHHHHHHC-C-CCCEEEEcCCCcceEEEecEEE-----CCCCEEEEeCCEEEEEcCCHHHcccccceeeeEe
Confidence            5679999999999864 3 47899999995  399999998     899999998  48999998888743         


Q ss_pred             ----CceeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCce
Q 015319          188 ----GLLWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPT  263 (409)
Q Consensus       188 ----g~~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~  263 (409)
                          +..+||.+.+++||+|+|+|+|||+|..||.....   ..-+.                 ....+. ......||+
T Consensus        94 ~~~~~~~~~i~~~~~~Ni~ItG~G~IDG~G~~~~~~~~~---~~~~~-----------------~~~~~~-~~~~~~rP~  152 (376)
T d1bhea_          94 KNGKGCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKV---SWWEL-----------------AADAKV-KKLKQNTPR  152 (376)
T ss_dssp             SCSCCBCCSEEEESCBSCEEECSSEEECCTTSCCSSSSS---CTTHH-----------------HHHHHH-HTCEECCCC
T ss_pred             ccCcccceeEEecCcceEEEEeCcEEecccceeecCCcc---chhcc-----------------cccccc-ccCCCCCCe
Confidence                13568999999999999999999999877654310   00000                 000000 122346899


Q ss_pred             eEEEEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCC-
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG-  342 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg-  342 (409)
                      +|.|.+|+|++|+|++|+|+++|++++..|++++|+|++|.++...+|+|||++.+|+||+|+||+|.++||||+++++ 
T Consensus       153 ~i~~~~~~nv~i~~iti~ns~~~~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDD~i~~ks~~  232 (376)
T d1bhea_         153 LIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYK  232 (376)
T ss_dssp             SEEEESCEEEEEEEEEEECCSSCSEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEECSSCSEEEEECT
T ss_pred             EEEEEecccEEEEeeEEecCCceEEEEeCCceEEEEeEeccCCccCCCcceeeccccceEEEEeceeecCCCceeeeccc
Confidence            9999999999999999999999999999999999999999998888999999999999999999999999999999985 


Q ss_pred             ----ceeEEEEEEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          343 ----CSNVYVHNVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       343 ----~~nV~I~n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                          ++||+|+||+|..+||++||++.     ..++||+|+||+|.++.+|++||+|+|++|.|+||+.+
T Consensus       233 ~~~~~~ni~i~n~~~~~~~g~~iGs~~-----~~v~nv~i~n~~~~~~~~g~~Iks~~~~gG~v~nI~f~  297 (376)
T d1bhea_         233 GRAETRNISILHNDFGTGHGMSIGSET-----MGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYS  297 (376)
T ss_dssp             TSCCEEEEEEEEEEECSSSCEEEEEEE-----SSEEEEEEEEEEEESCSEEEEEECCTTTCCEEEEEEEE
T ss_pred             CCCCcceEEEEeeEEecCCCceecccc-----CCEEEEEEEeeeEcCCCceEEEEecCCCccEEEEEEEE
Confidence                78999999999999999999972     34999999999999999999999999999999998754

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=100.00  E-value=1.1e-45  Score=365.59  Aligned_cols=239  Identities=26%  Similarity=0.385  Sum_probs=208.2

Q ss_pred             CCCCccHHHHHHHHHHHhhc-CCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEecc
Q 015319          120 NGVSDDTKAFEAAWAAACKV-EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKL  198 (409)
Q Consensus       120 dg~tDdT~Aiq~Ai~~a~~~-gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~  198 (409)
                      ||.||||+||.+||.+||.. ++++|+||+|.|+.+..+       .++++|+++|++.+.  .+.|..    ++.+...
T Consensus         1 dg~t~~t~a~~~a~~~aC~~~~~~~v~VP~G~~l~l~~l-------~~g~~~~~~g~~~~~--~~~w~~----~~~~~~~   67 (335)
T d1czfa_           1 DSCTFTTAAAAKAGKAKCSTITLNNIEVPAGTTLDLTGL-------TSGTKVIFEGTTTFQ--YEEWAG----PLISMSG   67 (335)
T ss_dssp             CEEEESSHHHHHHHGGGCSEEEEESCEECTTCCEEECSC-------CTTCEEEEESEEEEC--CCCSCC----CSEEEEE
T ss_pred             CCcccchHHHHHHHHHHCCCCCCCeEEECCCCEEecccC-------CCCCEEEEEeEEecc--cccCCC----CEEEEec
Confidence            78999999999999999975 568999999965544332       578999999998874  345642    3445567


Q ss_pred             cCeeeeece--EEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEe
Q 015319          199 KGITIQGKG--IIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVT  276 (409)
Q Consensus       199 ~nVtI~G~G--~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~  276 (409)
                      +||+|+|.|  +|||+|+.||+...                                  .....||+++.|.+|+|++|+
T Consensus        68 ~ni~i~G~g~g~IDG~G~~ww~~~~----------------------------------~~~~~rP~~~~~~~~~nv~i~  113 (335)
T d1czfa_          68 EHITVTGASGHLINCDGARWWDGKG----------------------------------TSGKKKPKFFYAHGLDSSSIT  113 (335)
T ss_dssp             ESCEEEECTTCEEECCGGGTCCSCT----------------------------------TSSSCCCCCEEEEEEETEEEE
T ss_pred             ceEEEEeCCCCEEcCCCHHHhccCC----------------------------------CCCCCCceEEEEecceEEEEE
Confidence            999999965  99999999997641                                  223459999999999999999


Q ss_pred             ceEEecCCCCeEEeecCccEEEEeEEEeCC----CCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEE
Q 015319          277 GITIQNSPQCHLKFDNCIGVVVHDVSVSSP----GDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVN  352 (409)
Q Consensus       277 gvti~ns~~~~i~~~~~~nV~I~n~~I~s~----~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~  352 (409)
                      +++++|+++|++++ .|++|+|+|++|.++    ...+|+||||+.+|+||+|+||+|.++||||++++ .+||.|+||+
T Consensus       114 gi~~~nsp~w~~~i-~~~nv~i~~i~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~tgDDcIaiks-~~ni~i~n~~  191 (335)
T d1czfa_         114 GLNIKNTPLMAFSV-QANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNS-GENIWFTGGT  191 (335)
T ss_dssp             SCEEECCSSCCEEE-ECSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEECSSCSEEESS-EEEEEEESCE
T ss_pred             eeEEEcCCceEEEE-eeeeEEEEeEEEECcCCCcCccCCCCceEecCCCeEEEEeeEEecCCceEEecC-ceEEEEEEEE
Confidence            99999999999998 599999999999985    34679999999999999999999999999999999 4999999999


Q ss_pred             EcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          353 CGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       353 ~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      |..+||++++++|.+ ..+.|+||+|+||+|.++.+|+|||+|+|++|.|+||+.+
T Consensus       192 c~~~hG~sigslG~~-~~~~v~nV~v~n~~i~~t~~g~rIKt~~g~~G~v~nI~~~  246 (335)
T d1czfa_         192 CIGGHGLSIGSVGDR-SNNVVKNVTIEHSTVSNSENAVRIKTISGATGSVSEITYS  246 (335)
T ss_dssp             EESSCCEEEEEECSS-SCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEE
T ss_pred             EECCCCccccccCCC-CcCCEeEEEEEeeEEECCCccceEeccCCCCccEeEEEEE
Confidence            999999999999876 4577999999999999999999999999999999998753

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=1.5e-44  Score=357.47  Aligned_cols=239  Identities=26%  Similarity=0.388  Sum_probs=205.0

Q ss_pred             CCccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEecccCe
Q 015319          122 VSDDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGI  201 (409)
Q Consensus       122 ~tDdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nV  201 (409)
                      .+||++||++|++++...++++|+||+|.||.+..+       +++.++.++|+....  ...|..   +++ +...+||
T Consensus         8 g~d~~~~i~~a~~~C~~~~~~~v~vPaG~~l~l~~l-------~~g~~v~~~g~~~~~--~~~~~g---~l~-~~~g~ni   74 (339)
T d1ia5a_           8 GSNGASSASKSKTSCSTIVLSNVAVPSGTTLDLTKL-------NDGTHVIFSGETTFG--YKEWSG---PLI-SVSGSDL   74 (339)
T ss_dssp             GGGHHHHHHHHGGGCSEEEEESCEECTTCCEEECSC-------CTTCEEEEESEEEEC--CCCSCC---CSE-EEEEESC
T ss_pred             CcccHHHHHHHHHhCcCCCCCeEEECCCCeEeeecc-------CCCCEEEeeCCcccc--cCCccC---CeE-EEEeeeE
Confidence            479999999999765566788999999977766544       467788888876542  234542   333 3445899


Q ss_pred             eeeece--EEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceE
Q 015319          202 TIQGKG--IIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGIT  279 (409)
Q Consensus       202 tI~G~G--~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvt  279 (409)
                      +|+|.|  +|||+|+.||+...                                 ......||++|.|.+|+|++|+|++
T Consensus        75 ~i~G~g~g~IDG~G~~wW~~~~---------------------------------~~~~~~rP~~l~~~~~~nv~i~git  121 (339)
T d1ia5a_          75 TITGASGHSINGDGSRWWDGEG---------------------------------GNGGKTKPKFFAAHSLTNSVISGLK  121 (339)
T ss_dssp             EEEECTTCEEECCGGGTCSSCT---------------------------------TTSSSCCCCCEEEEEEEEEEEESCE
T ss_pred             EEEecCCCeEeCCchhhhhccc---------------------------------CCCCCCCCeEEEEEecCCCEEeceE
Confidence            999976  99999999997641                                 1233469999999999999999999


Q ss_pred             EecCCCCeEEeecCccEEEEeEEEeCCC----CCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcC
Q 015319          280 IQNSPQCHLKFDNCIGVVVHDVSVSSPG----DSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGP  355 (409)
Q Consensus       280 i~ns~~~~i~~~~~~nV~I~n~~I~s~~----~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~  355 (409)
                      |+|+++|++++..|++|+|+|++|.++.    .++|+||||+.+|+||+|+||+|.++||||+++++ +||+|+||+|..
T Consensus       122 l~nsp~w~~~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks~-~ni~i~n~~c~~  200 (339)
T d1ia5a_         122 IVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSG  200 (339)
T ss_dssp             EECCSSCCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESSE-EEEEEESCEEES
T ss_pred             EEcCCceEEEEecccEEEEEEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEcCCCeEEecCc-cEEEEEEeEEec
Confidence            9999999999999999999999999862    46899999999999999999999999999999995 999999999999


Q ss_pred             CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          356 GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       356 g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      +||++||++|.+ ..+.|+||+|+||+|.++.+|+|||||+|++|+|+||+.+
T Consensus       201 ghG~sigslG~~-~~~~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nV~f~  252 (339)
T d1ia5a_         201 GHGLSIGSVGGR-SDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYK  252 (339)
T ss_dssp             SSCEEEEEECSS-SCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEE
T ss_pred             cccceecccccC-ccccEEEEEEECCcccCCcceeEEeeeCCCCEEEEEEEEE
Confidence            999999999976 4578999999999999999999999999999999998753

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=100.00  E-value=8e-44  Score=351.97  Aligned_cols=237  Identities=26%  Similarity=0.425  Sum_probs=203.4

Q ss_pred             ccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEeccc-Cee
Q 015319          124 DDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLK-GIT  202 (409)
Q Consensus       124 DdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~-nVt  202 (409)
                      +|++|||+|++++...++++|+||+|.|+.+.++       +.+.+|+++|++.+.  +..|.   ..|+.+...+ +|+
T Consensus         6 ~~~~~i~~ai~~C~~~~~~~v~VP~G~~l~l~~~-------~~g~~v~~~g~~~~~--~~~~~---g~~~~~~g~~~~i~   73 (336)
T d1nhca_           6 TSASEASESISSCSDVVLSSIEVPAGETLDLSDA-------ADGSTITFEGTTSFG--YKEWK---GPLIRFGGKDLTVT   73 (336)
T ss_dssp             SSHHHHHHHGGGCSEEEEESCEECTTCCEECTTC-------CTTCEEEEESEEEEC--CCCSC---CCSEECCEESCEEE
T ss_pred             CcHHHHHHHHHHCcCCCCCeEEECCCCeEeCCCC-------CCCCEEEEEEEEecc--ccccc---CceEEEEEEEEEEE
Confidence            6899999999866566789999999966555443       356788899988773  44564   3566665544 688


Q ss_pred             eeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEec
Q 015319          203 IQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQN  282 (409)
Q Consensus       203 I~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~n  282 (409)
                      +.|+|+|||+|+.||+...                                 ......||++|.|.+|+|++|+||+|+|
T Consensus        74 ~~G~G~IDG~G~~ww~~~~---------------------------------~~~~~~rP~~i~~~~~~nv~i~giti~n  120 (336)
T d1nhca_          74 MADGAVIDGDGSRWWDSKG---------------------------------TNGGKTKPKFMYIHDVEDSTFKGINIKN  120 (336)
T ss_dssp             ECTTCEEECCGGGTCCSCT---------------------------------TTSSSCCCCCEEEEEEEEEEEESCEEEC
T ss_pred             EeCCeEEeCCcHHHhcccc---------------------------------cCCCCCCCeEEEEeccCCcEEEeEEEEc
Confidence            8899999999999997641                                 0123359999999999999999999999


Q ss_pred             CCCCeEEeecCccEEEEeEEEeCCC----CCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCe
Q 015319          283 SPQCHLKFDNCIGVVVHDVSVSSPG----DSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHG  358 (409)
Q Consensus       283 s~~~~i~~~~~~nV~I~n~~I~s~~----~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~G  358 (409)
                      +++|++++ .|++|+|+|++|.++.    ..+|+||||+.+|+||+|+||+|.++||||+++++ +||.|+||+|..+||
T Consensus       121 sp~~~i~i-~~~nv~i~nv~I~~~~~~~~~~~NtDGidi~~s~nv~I~n~~i~~gDDcIaik~g-~ni~i~n~~c~~~~g  198 (336)
T d1nhca_         121 TPVQAISV-QATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCSGGHG  198 (336)
T ss_dssp             CSSCCEEE-EEEEEEEESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEESSSEEEEESSE-EEEEEESCEEESSSE
T ss_pred             CCceEEEE-eeeEEEEEEEEEECcCCCccccCCCceEEcCCccCEeEecceEeecCCcEEeecc-ceEEEEEeeeccccc
Confidence            99999997 6999999999999874    35799999999999999999999999999999995 899999999999999


Q ss_pred             eEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          359 ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       359 isIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      +++|++|.+ ..+.|+||+|+||+|.++.+|+|||+|.|++|.|+||+.+
T Consensus       199 ~sigslG~~-~~~~v~nV~v~n~~~~~t~~G~rIKt~~~~~G~v~nV~f~  247 (336)
T d1nhca_         199 LSIGSVGGR-DDNTVKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYS  247 (336)
T ss_dssp             EEEEEESSS-SCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEE
T ss_pred             ceeeecccc-ccccEEEEEEEeceeeCCCceeEEEEecCCCceEeeEEEE
Confidence            999999976 4578999999999999999999999999999999998753

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=100.00  E-value=2.8e-43  Score=350.10  Aligned_cols=241  Identities=21%  Similarity=0.318  Sum_probs=206.1

Q ss_pred             ccHHHHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEecccCeee
Q 015319          124 DDTKAFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITI  203 (409)
Q Consensus       124 DdT~Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI  203 (409)
                      +|++|||+||+++.+.++++|+||+|.|+.+.+|       +++++|+++|++.++.....|.    .++ +...+||+|
T Consensus         6 ~d~~ai~~ai~~C~~~~~~~v~vPaG~~l~~~~l-------~~~~tl~~~g~~~~~~~~~~~~----~~~-~~~~~ni~I   73 (349)
T d1hg8a_           6 TEYSGLATAVSSCKNIVLNGFQVPTGKQLDLSSL-------QNDSTVTFKGTTTFATTADNDF----NPI-VISGSNITI   73 (349)
T ss_dssp             SSGGGHHHHHHHCSEEEECCCEECTTCCEEETTC-------CTTCEEEECSEEEECCCCCTTC----CSE-EEEEESCEE
T ss_pred             CCHHHHHHHHHHccCCCCCeEEECCCceEeCCCC-------CCCCEEEEEeeEEeeccccccC----CeE-EEeeeeEEE
Confidence            6899999999987777789999999966666653       5789999999888766654442    222 345689999


Q ss_pred             eece--EEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEe
Q 015319          204 QGKG--IIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQ  281 (409)
Q Consensus       204 ~G~G--~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~  281 (409)
                      +|+|  +|||+|+.||+......                              ......+|.++.|..|+|++|++++++
T Consensus        74 ~G~G~g~IDG~G~~ww~~~~~~~------------------------------~~~~~p~p~~i~~~~~~nv~i~~i~l~  123 (349)
T d1hg8a_          74 TGASGHVIDGNGQAYWDGKGSNS------------------------------NSNQKPDHFIVVQKTTGNSKITNLNIQ  123 (349)
T ss_dssp             EECTTCEEECCGGGTCCSCTTCT------------------------------TSCCCCSEEEEEEEEESSEEEESCEEE
T ss_pred             EecCCCEEeCCChHHhcccccCC------------------------------CCCCCCcceEEEEeccCCeEEEeeEEe
Confidence            9966  99999999997642100                              112234778999999999999999999


Q ss_pred             cCCCCeEEeecCccEEEEeEEEeCCC------------CCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEE
Q 015319          282 NSPQCHLKFDNCIGVVVHDVSVSSPG------------DSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVH  349 (409)
Q Consensus       282 ns~~~~i~~~~~~nV~I~n~~I~s~~------------~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~  349 (409)
                      |+++|++++..|++|+|+|++|.++.            ..+|+|||++.+|+||+|+||+|.++||||++++ ++||+|+
T Consensus       124 nsp~w~~~~~~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~~s~nv~I~n~~i~~gDD~iaik~-~~ni~i~  202 (349)
T d1hg8a_         124 NWPVHCFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVTS-GTNIVVS  202 (349)
T ss_dssp             CCSSEEEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEECSSCSEEESS-EEEEEEE
T ss_pred             CCCceEEEEeccceEEEEEEEEECCCcccccccccCccccCCCCeEeeCCCCeEEEEeeeecCCCCceEecc-ccceEEE
Confidence            99999999999999999999998742            4579999999999999999999999999999998 6999999


Q ss_pred             EEEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecCCCCeEEEEEeC
Q 015319          350 NVNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       350 n~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      ||+|.++||++++++|.+ ..+.|+||+|+||+|.++.+|+|||+|+|++|.|+||+.+
T Consensus       203 n~~~~~ghg~sigs~G~~-~~~~v~nV~v~n~~~~~~~~g~rIKs~~g~gG~v~nI~~~  260 (349)
T d1hg8a_         203 NMYCSGGHGLSIGSVGGK-SDNVVDGVQFLSSQVVNSQNGCRIKSNSGATGTINNVTYQ  260 (349)
T ss_dssp             EEEEESSCCEEEEEESSS-SCCEEEEEEEEEEEEEEEEEEEEEEEETTCCEEEEEEEEE
T ss_pred             EEEEeCCcccccccCCCc-ccccEEEEEEEcceecCCcceEEEEEEcCCCccEEEeEEE
Confidence            999999999999999876 5678999999999999999999999999999999999754

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=100.00  E-value=7.1e-40  Score=322.29  Aligned_cols=228  Identities=24%  Similarity=0.360  Sum_probs=185.0

Q ss_pred             HHHHHHHHHhhcCCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCCCceeeEEEecccCeeeeec-
Q 015319          128 AFEAAWAAACKVEASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGKGLLWWLDFTKLKGITIQGK-  206 (409)
Q Consensus       128 Aiq~Ai~~a~~~gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~g~~~~i~~~~~~nVtI~G~-  206 (409)
                      +.++|++++...++++|+||+|.||.+.   +     ..+.+|+++|++.+..  ..|..   +++.+ +.+||+|+|. 
T Consensus         7 ~~a~~i~~Cs~~~~~~v~VPaG~~l~L~---~-----~~g~~v~f~G~~~~~~--~~w~g---pl~~~-~g~~i~i~G~g   72 (333)
T d1k5ca_           7 DDAKDIAGCSAVTLNGFTVPAGNTLVLN---P-----DKGATVTMAGDITFAK--TTLDG---PLFTI-DGTGINFVGAD   72 (333)
T ss_dssp             TGGGGCTTCSEEEECCEEECTTCCEEEC---C-----CTTCEEEECSCEEECC--CCSCS---CSEEE-EEEEEEEECTT
T ss_pred             HhhhhHhhCcCCCCCeEEECCCCEEEEe---c-----ccCCEEEEeeeEeccc--ccccC---CEEEE-EeceEEEEcCC
Confidence            3345565444456889999999777653   3     4577889999877743  34652   34544 4599999995 


Q ss_pred             eEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCCCC
Q 015319          207 GIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQC  286 (409)
Q Consensus       207 G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~~  286 (409)
                      |+|||+|+.||....                                 ......||.++.+..+.+ +|++++++|++.|
T Consensus        73 gvIDG~G~~wW~~~~---------------------------------~~~~~~rP~~~~~~~~~~-~i~~i~~~nsp~~  118 (333)
T d1k5ca_          73 HIFDGNGALYWDGKG---------------------------------TNNGTHKPHPFLKIKGSG-TYKKFEVLNSPAQ  118 (333)
T ss_dssp             CEEECCGGGTCCSCT---------------------------------TTSSSCCCCCSEEEEEEE-EEESCEEESCSSC
T ss_pred             CeEeCCchHHhcccC---------------------------------CCCCCCCCeEEEEEecCc-eEEEEEEEECCce
Confidence            489999999997641                                 122335888887777665 5999999999999


Q ss_pred             eEEeecCc-cEEEEeEEEeCC-----CCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeE
Q 015319          287 HLKFDNCI-GVVVHDVSVSSP-----GDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGIS  360 (409)
Q Consensus       287 ~i~~~~~~-nV~I~n~~I~s~-----~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~Gis  360 (409)
                      ++++..|+ +++++|++|.+.     ..++|+||||+ +|+||+|+||+|.++||||+++++ +||+|+||+|.++|||+
T Consensus       119 ~~~i~~~~~~v~i~nv~I~~~~i~~~~~~~NTDGidi-~s~nV~I~n~~i~~gDDcIaik~g-~ni~i~n~~c~~ghGis  196 (333)
T d1k5ca_         119 AISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQDDCIAINDG-NNIRFENNQCSGGHGIS  196 (333)
T ss_dssp             CEEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEESSSCSEEEEEE-EEEEEESCEEESSCCEE
T ss_pred             EEEEecccCcEEEEeEEEEeeecCCCccCCCcceEeE-ecceEEEEecEEecCCCEEEEcCc-cEEEEEEEEECCCCcee
Confidence            99999886 788888888763     45789999999 589999999999999999999995 89999999999999999


Q ss_pred             EEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC-CCCeEEEEEeC
Q 015319          361 IGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV-MIPSGTQCYNS  408 (409)
Q Consensus       361 IGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G-~~g~v~~~~~~  408 (409)
                      |||++.   ++.|+||+|+||+|.++.+|+|||||++ ++|+|+||..+
T Consensus       197 iGS~g~---~~~V~nV~v~n~~~~~t~~G~rIKt~~~~~~G~v~nI~f~  242 (333)
T d1k5ca_         197 IGSIAT---GKHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYD  242 (333)
T ss_dssp             EEEECT---TCEEEEEEEESCEEEEEEEEEEEEEETTCCSCEEEEEEEE
T ss_pred             eecccC---CCcEEEEEEEEeEEeCCcEEEEEEEccCCCceEEEEEEEE
Confidence            999974   4569999999999999999999999985 67999999753

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=100.00  E-value=8.2e-39  Score=320.39  Aligned_cols=255  Identities=14%  Similarity=0.068  Sum_probs=209.6

Q ss_pred             eccccCCCCCccHHHHHHHHHHHhhc-CCcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCC-C--c
Q 015319          114 DFGAKGNGVSDDTKAFEAAWAAACKV-EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGK-G--L  189 (409)
Q Consensus       114 d~GA~gdg~tDdT~Aiq~Ai~~a~~~-gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~-g--~  189 (409)
                      .|||+|++++|+|+|||+|+.+++.. ++++||||+| +|+++++.+     +++++++++|+++.+.....|.. +  .
T Consensus         2 ~~ga~p~~~~d~t~a~~~a~~~~~~~~~~~vvy~PpG-~y~~g~~~~-----~~~~~~~~~g~~l~~~~~~~y~~~G~~~   75 (373)
T d1ogmx2           2 PSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPG-VYWMNQDQS-----GNSGKLGSNHIRLNSNTYWVYLAPGAYV   75 (373)
T ss_dssp             CGGGSCCCCTTTEEECCSEEECTTTTCSSSEEEECSE-EEEECBCTT-----CCBSCSSSCCEECCTTCCEEEECTTEEE
T ss_pred             CCCccCCCCCCchHHhhhhhhhhcccCCCCEEEECCc-eeEeCCeee-----cCceEEEcCceEeccCceEEecCCCcEE
Confidence            69999999999999999996666664 4689999999 999999987     78999999988887777655533 2  3


Q ss_pred             eeeEEEecccCeeeeeceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEe
Q 015319          190 LWWLDFTKLKGITIQGKGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYG  269 (409)
Q Consensus       190 ~~~i~~~~~~nVtI~G~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~  269 (409)
                      ..||.+.+.+||+|+|+|+|||+|..||.....   .....                     . .......||+++.|.+
T Consensus        76 ~~~i~~~~~~nv~I~G~G~idG~G~~~~~~~~~---~~~~~---------------------~-~~~~~~~~~~~i~~~~  130 (373)
T d1ogmx2          76 KGAIEYFTKQNFYATGHGILSGENYVYQANAGD---NYIAV---------------------K-SDSTSLRMWWHNNLGG  130 (373)
T ss_dssp             ESCEEECCSSCEEEESSCEEECTTSCTTCBTTT---TTBSC---------------------C-CTTTBCCSEEESCCCS
T ss_pred             EeEEEecCcceEEEEcceEEcCCcceecccccc---ccccc---------------------c-cCCcccCCceEEEEEc
Confidence            468999999999999999999999999976421   00000                     0 0112235899999999


Q ss_pred             eeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeC-CCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEE
Q 015319          270 SFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSS-PGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYV  348 (409)
Q Consensus       270 ~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s-~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I  348 (409)
                      |+|++|+|++++++++|++++..|++++++++++.+ +...+++|||++  |++|+|+||+++++||||++++  .|++|
T Consensus       131 ~~n~~i~giti~~s~~~~~~~~~~~~v~i~~~~i~~~~~~~~n~dgi~~--~~~~~i~~~~~~~gDD~i~~~s--~~i~v  206 (373)
T d1ogmx2         131 GQTWYCVGPTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTDGPEI--YPNSVVHDVFWHVNDDAIKIYY--SGASV  206 (373)
T ss_dssp             SEEEEEESCEEECCSSCCEEECSSSCEEEEEEEEEEECCCSTTCCCCBC--CTTCEEEEEEEEESSCSEECCS--TTCEE
T ss_pred             ceEEEEeCEEEECCCeeEEEEccCCeEEEEEEEEEecCCCCCCCeeeec--cCCEEEEeeEEecCCCEEEecC--CCEEE
Confidence            999999999999999999999999999999999975 455789999999  6899999999999999999997  69999


Q ss_pred             EEEEEcCC---CeeEEEecCCCCCCCcEEEEEEEeEEEecccc---------------eEEEEeecCCCCeEEEEEeC
Q 015319          349 HNVNCGPG---HGISIGSLGKDNTKACVSNITVRDVMMHNTMN---------------GVRIKTWQVMIPSGTQCYNS  408 (409)
Q Consensus       349 ~n~~~~~g---~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~---------------Gi~Ikt~~G~~g~v~~~~~~  408 (409)
                      +||+|..+   +++++|+++     ..++||+|+||+|.++..               ..+++++.+++|.++||+.+
T Consensus       207 ~n~~~~~~~~~~~~~~g~~g-----~~i~nv~v~ni~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ni~f~  279 (373)
T d1ogmx2         207 SRATIWKCHNDPIIQMGWTS-----RDISGVTIDTLNVIHTRYIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVS  279 (373)
T ss_dssp             EEEEEEECSSSCSEECCSSC-----CCEEEEEEEEEEEEECCCSSCCTTTTCEEEEECCCSSSSCCCEEEEEEEEEEE
T ss_pred             EEEEEECCCceeEEEeccCC-----CCcceeEEEeeEEECceeccccccccccccccccceeeeccCCCeEEEeEEEE
Confidence            99998864   457777653     459999999999987542               34567778889999988753

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=99.63  E-value=1.2e-14  Score=142.02  Aligned_cols=136  Identities=18%  Similarity=0.205  Sum_probs=112.5

Q ss_pred             eEEEEeeeeEEEeceEEecCC--------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319          264 ALRFYGSFNVTVTGITIQNSP--------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD  335 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~--------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD  335 (409)
                      .+++.+|+||+|++++|.+..        ..+|++..|++|+|+|++|.+     .+|+|.+.+++||+|+||++..+ .
T Consensus       129 ~~~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~-----gDDcIaiks~~ni~i~n~~c~~g-h  202 (339)
T d1ia5a_         129 VFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYN-----QDDCVAVNSGENIYFSGGYCSGG-H  202 (339)
T ss_dssp             CEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEEC-----SSCSEEESSEEEEEEESCEEESS-S
T ss_pred             EEEEecccEEEEEEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEc-----CCCeEEecCccEEEEEEeEEecc-c
Confidence            578899999999999998752        257999999999999999999     78999999999999999999876 4


Q ss_pred             eEEe---CC----CceeEEEEEEEEcCC-CeeEEEecCCCCCCCcEEEEEEEeEEEecc-cceEEEEeecCCCC------
Q 015319          336 CVSI---QT----GCSNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNT-MNGVRIKTWQVMIP------  400 (409)
Q Consensus       336 ~Iai---~s----g~~nV~I~n~~~~~g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~~-~~Gi~Ikt~~G~~g------  400 (409)
                      ++++   ++    +.+||+|+||++.+. +|+.|.+.-  +..+.|+||+|+|++|++. .++|.|....+...      
T Consensus       203 G~sigslG~~~~~~v~nV~v~n~~~~~t~~GirIKt~~--g~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~~~~~~  280 (339)
T d1ia5a_         203 GLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKTNI--DTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTPTTG  280 (339)
T ss_dssp             CEEEEEECSSSCCEEEEEEEEEEEEESCSEEEEEEEET--TCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTSCCCSS
T ss_pred             cceecccccCccccEEEEEEECCcccCCcceeEEeeeC--CCCEEEEEEEEEEEEEeccccccEEEEeecCCCCCCCCCC
Confidence            6655   32    279999999999984 699998762  2457899999999999996 57999987544222      


Q ss_pred             -eEEEEEe
Q 015319          401 -SGTQCYN  407 (409)
Q Consensus       401 -~v~~~~~  407 (409)
                       .++||+.
T Consensus       281 v~i~nI~~  288 (339)
T d1ia5a_         281 VPITDFVL  288 (339)
T ss_dssp             SCEEEEEE
T ss_pred             cEEEeEEE
Confidence             4777764

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=99.62  E-value=3.5e-14  Score=140.60  Aligned_cols=136  Identities=17%  Similarity=0.240  Sum_probs=112.8

Q ss_pred             eEEEEeeeeEEEeceEEecCCC----CeEEeecCccEEEEeEEEeCCCCCCCCCceeecC------cccEEEEeeEEeeC
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQ----CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQN------SKDVLIHTSNLACG  333 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~----~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~------s~nV~I~n~~i~~g  333 (409)
                      .+.+.+|+|++|++++|.+...    .+|++..|++|+|+||.|.+     .+|+|.+.+      ++||+|+||++..+
T Consensus       176 ~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~-----gDD~i~~ks~~~~~~~~ni~i~n~~~~~~  250 (376)
T d1bhea_         176 HVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIAT-----GDDNVAIKAYKGRAETRNISILHNDFGTG  250 (376)
T ss_dssp             SEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEEC-----SSCSEEEEECTTSCCEEEEEEEEEEECSS
T ss_pred             EEEEeCCceEEEEeEeccCCccCCCcceeeccccceEEEEeceeec-----CCCceeeecccCCCCcceEEEEeeEEecC
Confidence            4678899999999999997542    46999999999999999998     788998864      68999999999875


Q ss_pred             CCeEEeCC---CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC-----CCCeEEE
Q 015319          334 DDCVSIQT---GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV-----MIPSGTQ  404 (409)
Q Consensus       334 DD~Iai~s---g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G-----~~g~v~~  404 (409)
                       .++.+++   +.+||+|+||++.+ ..|+.|.+.-  ...+.|+||+|+|++|.+...+|.|.....     ..+.++|
T Consensus       251 -~g~~iGs~~~~v~nv~i~n~~~~~~~~g~~Iks~~--~~gG~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~i~n  327 (376)
T d1bhea_         251 -HGMSIGSETMGVYNVTVDDLKMNGTTNGLRIKSDK--SAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDWSD  327 (376)
T ss_dssp             -SCEEEEEEESSEEEEEEEEEEEESCSEEEEEECCT--TTCCEEEEEEEEEEEEESCSEEEEEETTSSCCCCCCCCEEEE
T ss_pred             -CCceeccccCCEEEEEEEeeeEcCCCceEEEEecC--CCccEEEEEEEEeEEEeccCccEEEEeecCCCCCCCCCEEee
Confidence             5788865   47999999999998 4699998752  345789999999999999999999986532     3445777


Q ss_pred             EEe
Q 015319          405 CYN  407 (409)
Q Consensus       405 ~~~  407 (409)
                      |..
T Consensus       328 It~  330 (376)
T d1bhea_         328 ITF  330 (376)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            754

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=99.62  E-value=2.5e-14  Score=140.36  Aligned_cols=125  Identities=15%  Similarity=0.253  Sum_probs=106.2

Q ss_pred             eEEEEeeeeEEEeceEEecCC----------------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEe
Q 015319          264 ALRFYGSFNVTVTGITIQNSP----------------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHT  327 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~----------------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n  327 (409)
                      .+++.+|+||+|++++|.+..                ..+|++.+|++|+|+||.|.+     .+|+|.+.+++||+|+|
T Consensus       129 ~~~~~~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~~s~nv~I~n~~i~~-----gDD~iaik~~~ni~i~n  203 (349)
T d1hg8a_         129 CFDITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYN-----QDDCVAVTSGTNIVVSN  203 (349)
T ss_dssp             EEEEESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEEC-----SSCSEEESSEEEEEEEE
T ss_pred             EEEEeccceEEEEEEEEECCCcccccccccCccccCCCCeEeeCCCCeEEEEeeeecC-----CCCceEeccccceEEEE
Confidence            578889999999999998743                246999999999999999999     78999999999999999


Q ss_pred             eEEeeCCCeEE---eCC----CceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccc-eEEEEeec
Q 015319          328 SNLACGDDCVS---IQT----GCSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMN-GVRIKTWQ  396 (409)
Q Consensus       328 ~~i~~gDD~Ia---i~s----g~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~-Gi~Ikt~~  396 (409)
                      |++..+. +++   +++    +.+||+|+||++.+ .+|+.|.+..  +..+.|+||+|+|++|++... +|.|....
T Consensus       204 ~~~~~gh-g~sigs~G~~~~~~v~nV~v~n~~~~~~~~g~rIKs~~--g~gG~v~nI~~~ni~~~~v~~~pI~i~~~y  278 (349)
T d1hg8a_         204 MYCSGGH-GLSIGSVGGKSDNVVDGVQFLSSQVVNSQNGCRIKSNS--GATGTINNVTYQNIALTNISTYGVDVQQDY  278 (349)
T ss_dssp             EEEESSC-CEEEEEESSSSCCEEEEEEEEEEEEEEEEEEEEEEEET--TCCEEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             EEEeCCc-ccccccCCCcccccEEEEEEEcceecCCcceEEEEEEc--CCCccEEEeEEEEEEEcCcccccEEEEeec
Confidence            9998764 444   343    27999999999998 5699998763  245789999999999999875 99998753

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=99.53  E-value=4.5e-13  Score=130.62  Aligned_cols=123  Identities=20%  Similarity=0.304  Sum_probs=102.8

Q ss_pred             eEEEEeeeeEEEeceEEecCC--------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC
Q 015319          264 ALRFYGSFNVTVTGITIQNSP--------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD  335 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~--------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD  335 (409)
                      .+.+ .|+|++|++++|.+..        ..+|++..|++|+|+|++|..     .+|+|.+.++++|+|+|+++..+ .
T Consensus       125 ~i~i-~~~nv~i~nv~I~~~~~~~~~~~NtDGidi~~s~nv~I~n~~i~~-----gDDcIaik~g~ni~i~n~~c~~~-~  197 (336)
T d1nhca_         125 AISV-QATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKN-----QDDCIAINSGESISFTGGTCSGG-H  197 (336)
T ss_dssp             CEEE-EEEEEEEESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEES-----SSEEEEESSEEEEEEESCEEESS-S
T ss_pred             EEEE-eeeEEEEEEEEEECcCCCccccCCCceEEcCCccCEeEecceEee-----cCCcEEeeccceEEEEEeeeccc-c
Confidence            3455 6999999999999863        257999999999999999998     78999999999999999998765 5


Q ss_pred             eEEe---CC----CceeEEEEEEEEcCC-CeeEEEecCCCCCCCcEEEEEEEeEEEeccc-ceEEEEee
Q 015319          336 CVSI---QT----GCSNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNTM-NGVRIKTW  395 (409)
Q Consensus       336 ~Iai---~s----g~~nV~I~n~~~~~g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~-~Gi~Ikt~  395 (409)
                      ++++   ++    +.+||+|+||++.+. .|+.|.+..  ...+.|+||+|+|++|++.. .+|.|...
T Consensus       198 g~sigslG~~~~~~v~nV~v~n~~~~~t~~G~rIKt~~--~~~G~v~nV~f~ni~~~~V~~~pi~I~~~  264 (336)
T d1nhca_         198 GLSIGSVGGRDDNTVKNVTISDSTVSNSANGVRIKTIY--KETGDVSEITYSNIQLSGITDYGIVIEQD  264 (336)
T ss_dssp             EEEEEEESSSSCCEEEEEEEEEEEEESCSEEEEEEEET--TCCCEEEEEEEEEEEEEEESSEEEEEEEE
T ss_pred             cceeeeccccccccEEEEEEEeceeeCCCceeEEEEec--CCCceEeeEEEEeEEEeccccccEEEEee
Confidence            5554   32    279999999999984 699998753  24578999999999999964 69999764

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=99.53  E-value=1.3e-13  Score=134.36  Aligned_cols=123  Identities=20%  Similarity=0.305  Sum_probs=103.1

Q ss_pred             EEEEeeeeEEEeceEEecCC--------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCe
Q 015319          265 LRFYGSFNVTVTGITIQNSP--------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDC  336 (409)
Q Consensus       265 i~~~~~~nv~I~gvti~ns~--------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~  336 (409)
                      +++ .|+|++|++++|.+..        ..+|++.+|++|+|+|++|.+     .+|+|.+.+++||+|+||++..+ .+
T Consensus       125 ~~i-~~~nv~i~~i~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~t-----gDDcIaiks~~ni~i~n~~c~~~-hG  197 (335)
T d1czfa_         125 FSV-QANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHN-----QDDCLAVNSGENIWFTGGTCIGG-HG  197 (335)
T ss_dssp             EEE-ECSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEEC-----SSCSEEESSEEEEEEESCEEESS-CC
T ss_pred             EEE-eeeeEEEEeEEEECcCCCcCccCCCCceEecCCCeEEEEeeEEec-----CCceEEecCceEEEEEEEEEECC-CC
Confidence            455 5999999999998742        356999999999999999999     79999999999999999998765 44


Q ss_pred             EEe---CCC----ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecccc-eEEEEeec
Q 015319          337 VSI---QTG----CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNTMN-GVRIKTWQ  396 (409)
Q Consensus       337 Iai---~sg----~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~-Gi~Ikt~~  396 (409)
                      +++   ++.    .+||+|+||++.+ .+|+.|.+.-  +..+.|+||+|+|++|.+..+ +|.|....
T Consensus       198 ~sigslG~~~~~~v~nV~v~n~~i~~t~~g~rIKt~~--g~~G~v~nI~~~ni~m~~v~~~pi~i~~~y  264 (335)
T d1czfa_         198 LSIGSVGDRSNNVVKNVTIEHSTVSNSENAVRIKTIS--GATGSVSEITYSNIVMSGISDYGVVIQQDY  264 (335)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEEEEEEEEEEEEEET--TCCEEEEEEEEEEEEEEEEEEEEEEEEEEE
T ss_pred             ccccccCCCCcCCEeEEEEEeeEEECCCccceEeccC--CCCccEeEEEEEeEEEcCccccCEEEEeec
Confidence            444   332    6999999999998 4699998862  345789999999999999875 89998753

>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: iota-carrageenase
domain: iota-carrageenase
species: Alteromonas sp., atcc 43554 [TaxId: 232]

Probab=99.50  E-value=3.9e-12  Score=119.65  Aligned_cols=226  Identities=19%  Similarity=0.337  Sum_probs=154.5

Q ss_pred             CCceEE-EeeccccCCCCCccHHHHHHHHHHHhhc-CCcEEEECCceEEEeCCcccCCCccccceEEEec-ceEEcCCCC
Q 015319          106 HSSVFN-VKDFGAKGNGVSDDTKAFEAAWAAACKV-EASIMVVPAESVFLVGPMSFSGPYCQANIIFQLD-GTIIAPTGS  182 (409)
Q Consensus       106 ~~~~~~-V~d~GA~gdg~tDdT~Aiq~Ai~~a~~~-gg~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~-Gtl~~~~~~  182 (409)
                      +..-++ |.||||.+....||+.++|.||.++.+. +|++|.+|.| +|.+..|.+     +||++|+++ ++++-|+.-
T Consensus        18 ~~~~~~lv~d~g~n~nDt~dDs~~L~~Ain~~sr~~~GG~l~lp~g-~y~l~~I~m-----~SNVhievE~~~viyPT~~   91 (464)
T d1h80a_          18 QDVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNG-TYHFLGIQM-----KSNVHIRVESDVIIKPTWN   91 (464)
T ss_dssp             CSEEEEHHHHHCCCTTSSSBCHHHHHHHHHHHHTSTTCEEEEECSS-EEEECSEEC-----CTTEEEEECTTCEEEECCC
T ss_pred             hhccccchhhcccCCCcccCcHHHHHHHHHHhhcCCCCcEEEEeCC-cEEEEEEee-----ccceEEEEecCeEEeecCC
Confidence            455566 6789999999999999999999998874 6899999999 666666665     799999999 777665533


Q ss_pred             cccCCCceeeEEE---ecccCeeeeece---EEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCC
Q 015319          183 KDWGKGLLWWLDF---TKLKGITIQGKG---IIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGK  256 (409)
Q Consensus       183 ~~~~~g~~~~i~~---~~~~nVtI~G~G---~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (409)
                      .+-.  ...++.|   ...+|+.|+|+|   +||-.+..                                         
T Consensus        92 ~d~K--NhrlF~fg~~n~veN~si~g~G~~FtID~~~n~-----------------------------------------  128 (464)
T d1h80a_          92 GDGK--NHRLFEVGVNNIVRNFSFQGLGNGFLVDFKDSR-----------------------------------------  128 (464)
T ss_dssp             TTCS--CEEEEEESSSSCEEEEEEEECTTCEEEECTTCS-----------------------------------------
T ss_pred             CCcc--cceeeeecccceeeeEEEEecCCcEEEEcccCC-----------------------------------------
Confidence            2211  1334555   357889999874   55544310                                         


Q ss_pred             CCCCCceeEEEEeeeeEEEeceEEecCCCC--eEEee---------cCccEEEEeEEEeCCCCCCCCCcee-ecCcccEE
Q 015319          257 MPSIKPTALRFYGSFNVTVTGITIQNSPQC--HLKFD---------NCIGVVVHDVSVSSPGDSPNTDGIH-LQNSKDVL  324 (409)
Q Consensus       257 ~~~~rp~~i~~~~~~nv~I~gvti~ns~~~--~i~~~---------~~~nV~I~n~~I~s~~~~~n~DGI~-l~~s~nV~  324 (409)
                       +. .-..+.+..++|+.|++++|++...-  .|.++         ....-.|+++.-...   ....|+- ..+..+|+
T Consensus       129 -~k-N~~~v~lg~V~nfkIsnf~I~DnkT~~asIlvdf~dk~g~~~~p~kGiIenIkq~~A---htGYGlIQ~YggD~Il  203 (464)
T d1h80a_         129 -DK-NLAVFKLGDVRNYKISNFTIDDNKTIFASILVDVTERNGRLHWSRNGIIERIKQNNA---LFGYGLIQTYGADNIL  203 (464)
T ss_dssp             -CC-BEEEEEECSEEEEEEEEEEEECCSCBSCSEEECEEEETTEEEEEEEEEEEEEEEESC---CTTCEEEEESEEEEEE
T ss_pred             -CC-ceeeEEeeeeeeeeeeeeeeccCceEEEEEEEeeecccCCcCCCccchhhhhhhcCc---cccceEEEeeccceEE
Confidence             00 11356777899999999999986522  12221         122345777776663   3444543 34567888


Q ss_pred             EEeeEEeeCCCeEEe-------------CCCceeEEEEEEEEcCCC-eeEEEecCCCCCCCcEEEEEEEeEEEecccceE
Q 015319          325 IHTSNLACGDDCVSI-------------QTGCSNVYVHNVNCGPGH-GISIGSLGKDNTKACVSNITVRDVMMHNTMNGV  390 (409)
Q Consensus       325 I~n~~i~~gDD~Iai-------------~sg~~nV~I~n~~~~~g~-GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi  390 (409)
                      ++|....+|   |.+             +.|+++|.+.|+.|..|- ++=++....     ...+|.++|++-.++..++
T Consensus       204 f~nl~~~gG---I~lRLEtdn~~mkN~kk~Gm~~IfatNIk~TnGlt~Vml~PHf~-----~ngdVsv~nItAi~cg~Av  275 (464)
T d1h80a_         204 FRNLHSEGG---IALRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHFM-----KNGDVQVTNVSSVSCGSAV  275 (464)
T ss_dssp             EEEEEEESS---EEEEEECCCHHHHHHTCCEEEEEEEEEEEEESSSEEEEEECTTC-----BCCCEEEEEEEEESSSCSE
T ss_pred             EccccccCC---eEEEEecCCchhhhhhhcchhhheeeeeeecCCccceeeccchh-----ccCceEEEEEEeecceeeE
Confidence            888776643   333             345889999999988864 666666532     2357888888888888888


Q ss_pred             EEE
Q 015319          391 RIK  393 (409)
Q Consensus       391 ~Ik  393 (409)
                      ++.
T Consensus       276 rv~  278 (464)
T d1h80a_         276 RSD  278 (464)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            874

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=99.36  E-value=4.2e-12  Score=123.28  Aligned_cols=136  Identities=18%  Similarity=0.192  Sum_probs=110.1

Q ss_pred             eEEEEeee-eEEEeceEEecCC---------CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC
Q 015319          264 ALRFYGSF-NVTVTGITIQNSP---------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG  333 (409)
Q Consensus       264 ~i~~~~~~-nv~I~gvti~ns~---------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g  333 (409)
                      .+++..|+ |+++++++|.+..         ..+|++ .|++|+|+|++|.+     .+|+|.+.+++||+|+||++..+
T Consensus       119 ~~~i~~~~~~v~i~nv~I~~~~i~~~~~~~NTDGidi-~s~nV~I~n~~i~~-----gDDcIaik~g~ni~i~n~~c~~g  192 (333)
T d1k5ca_         119 AISVGPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKN-----QDDCIAINDGNNIRFENNQCSGG  192 (333)
T ss_dssp             CEEEEEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEES-----SSCSEEEEEEEEEEEESCEEESS
T ss_pred             EEEEecccCcEEEEeEEEEeeecCCCccCCCcceEeE-ecceEEEEecEEec-----CCCEEEEcCccEEEEEEEEECCC
Confidence            46777775 8999999998632         256998 59999999999999     78999999999999999999887


Q ss_pred             CCeEEeCC----C-ceeEEEEEEEEcC-CCeeEEEecCCCCCCCcEEEEEEEeEEEecc-cceEEEEeecCC-------C
Q 015319          334 DDCVSIQT----G-CSNVYVHNVNCGP-GHGISIGSLGKDNTKACVSNITVRDVMMHNT-MNGVRIKTWQVM-------I  399 (409)
Q Consensus       334 DD~Iai~s----g-~~nV~I~n~~~~~-g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~-~~Gi~Ikt~~G~-------~  399 (409)
                       .+|+|++    + .+||+|+||++.+ .+|+.|.+... ...+.|+||+|+|++|++. .++|.|......       .
T Consensus       193 -hGisiGS~g~~~~V~nV~v~n~~~~~t~~G~rIKt~~~-~~~G~v~nI~f~ni~m~~v~~~pI~I~q~Y~~~~~~~~s~  270 (333)
T d1k5ca_         193 -HGISIGSIATGKHVSNVVIKGNTVTRSMYGVRIKAQRT-ATSASVSGVTYDANTISGIAKYGVLISQSYPDDVGNPGTG  270 (333)
T ss_dssp             -CCEEEEEECTTCEEEEEEEESCEEEEEEEEEEEEEETT-CCSCEEEEEEEESCEEEEEEEEEEEEEEEETSSSSSCCSS
T ss_pred             -CceeeecccCCCcEEEEEEEEeEEeCCcEEEEEEEccC-CCceEEEEEEEEEEEEECcccCCEEEEeeCCCCCCCCCCC
Confidence             4899975    2 6999999999998 46999988421 2457799999999999996 589999875421       1


Q ss_pred             CeEEEEEe
Q 015319          400 PSGTQCYN  407 (409)
Q Consensus       400 g~v~~~~~  407 (409)
                      ..++||..
T Consensus       271 v~i~nI~~  278 (333)
T d1k5ca_         271 APFSDVNF  278 (333)
T ss_dssp             SCEEEEEE
T ss_pred             CEEEeEEE
Confidence            13777764

>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=99.33  E-value=2.7e-11  Score=121.26  Aligned_cols=124  Identities=15%  Similarity=0.214  Sum_probs=104.0

Q ss_pred             eEEEEeeeeEEEeceEEecCCC---CeEEeecCccEEEEeEEEeCCCCCCCCCceeec-CcccEEEEeeEEeeCCCeEEe
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQ---CHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQ-NSKDVLIHTSNLACGDDCVSI  339 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~---~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~-~s~nV~I~n~~i~~gDD~Iai  339 (409)
                      .+.+.+|++++|++++|.....   .+|++.. ++|.|+|++|.+     .+|+|.+. .|+||+|+|+++..+ .++++
T Consensus       152 ~i~i~~c~~v~i~nv~I~~~~~~NtDGIdi~~-snv~I~n~~i~~-----gDDcIaiks~s~nI~i~n~~c~~g-~Gisi  224 (422)
T d1rmga_         152 HFTMDTCSDGEVYNMAIRGGNEGGLDGIDVWG-SNIWVHDVEVTN-----KDECVTVKSPANNILVESIYCNWS-GGCAM  224 (422)
T ss_dssp             SEEEEEEEEEEEEEEEEECCSSTTCCSEEEEE-EEEEEEEEEEES-----SSEEEEEEEEEEEEEEEEEEEESS-SEEEE
T ss_pred             EEEEeccccEEEEeeEEcCCCCCccceEeecc-cEEEEEeeEEEc-----CCCccccCCCCccEEEEeeEEccc-cceeE
Confidence            4678899999999999986432   4688876 489999999998     78999986 488999999988765 58888


Q ss_pred             CC-----CceeEEEEEEEEcCC-CeeEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeecC
Q 015319          340 QT-----GCSNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQV  397 (409)
Q Consensus       340 ~s-----g~~nV~I~n~~~~~g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~G  397 (409)
                      ++     +.+||+|+||++.+. +|+.|.+.+   ..+.|+||+|+|++|++..++|.|..+.+
T Consensus       225 Gs~g~~~~V~nV~v~n~~~~~s~~g~~ik~~~---g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~  285 (422)
T d1rmga_         225 GSLGADTDVTDIVYRNVYTWSSNQMYMIKSNG---GSGTVSNVLLENFIGHGNAYSLDIDGYWS  285 (422)
T ss_dssp             EEECTTEEEEEEEEEEEEEESSSCSEEEEEBB---CCEEEEEEEEEEEEEEEESCSEEEETBCT
T ss_pred             eeccCCCCEEEEEEEeEEEeCCCceEEEEEcC---CCceecceEEEEEEEecccccEEEecccC
Confidence            76     279999999999984 578888764   34679999999999999999999987654

>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

Probab=99.23  E-value=8e-11  Score=115.92  Aligned_cols=208  Identities=12%  Similarity=0.036  Sum_probs=140.8

Q ss_pred             CcEEEECCceEEEeCCcccCCCccccceEEEecceEEcCCCCcccCC---------------CceeeEEEecccCeeeee
Q 015319          141 ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDGTIIAPTGSKDWGK---------------GLLWWLDFTKLKGITIQG  205 (409)
Q Consensus       141 g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~Gtl~~~~~~~~~~~---------------g~~~~i~~~~~~nVtI~G  205 (409)
                      ...+|+++| .|+.+.+.+.+   .+++.|...|+|-... ..-|..               .....+.|.+++|+.|.|
T Consensus        64 ~~~~y~~~G-~~~~~~i~~~~---~~nv~I~G~G~idG~G-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~n~~i~g  138 (373)
T d1ogmx2          64 TYWVYLAPG-AYVKGAIEYFT---KQNFYATGHGILSGEN-YVYQANAGDNYIAVKSDSTSLRMWWHNNLGGGQTWYCVG  138 (373)
T ss_dssp             CCEEEECTT-EEEESCEEECC---SSCEEEESSCEEECTT-SCTTCBTTTTTBSCCCTTTBCCSEEESCCCSSEEEEEES
T ss_pred             ceEEecCCC-cEEEeEEEecC---cceEEEEcceEEcCCc-ceecccccccccccccCCcccCCceEEEEEcceEEEEeC
Confidence            457899999 77778888766   6899999999887532 222211               012346678888899987


Q ss_pred             ceEEeCCCcccccCCCCCCCCCccccccccccCCCCCCCCCCCccccccCCCCCCCceeEEEEeeeeEEEeceEEecCCC
Q 015319          206 KGIIDGRGSVWWQDYPYDDPIDDESKLIIPLHNNTLPYKPPTPIRSELSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQ  285 (409)
Q Consensus       206 ~G~IdG~G~~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~gvti~ns~~  285 (409)
                      - +|....                                                -..+++..|++++++++++.+.+.
T Consensus       139 i-ti~~s~------------------------------------------------~~~~~~~~~~~v~i~~~~i~~~~~  169 (373)
T d1ogmx2         139 P-TINAPP------------------------------------------------FNTMDFNGNSGISSQISDYKQVGA  169 (373)
T ss_dssp             C-EEECCS------------------------------------------------SCCEEECSSSCEEEEEEEEEEECC
T ss_pred             E-EEECCC------------------------------------------------eeEEEEccCCeEEEEEEEEEecCC
Confidence            2 221111                                                125677899999999999987654


Q ss_pred             Ce---EEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCC--eEEeCC---CceeEEEEEEEEcCCC
Q 015319          286 CH---LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDD--CVSIQT---GCSNVYVHNVNCGPGH  357 (409)
Q Consensus       286 ~~---i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD--~Iai~s---g~~nV~I~n~~~~~g~  357 (409)
                      |.   --++.|++++|+||.|++     .+|+|.+.+ .+++|+||++..+.-  .++++.   ..+|++|+||++....
T Consensus       170 ~~~n~dgi~~~~~~~i~~~~~~~-----gDD~i~~~s-~~i~v~n~~~~~~~~~~~~~~g~~g~~i~nv~v~ni~v~~~~  243 (373)
T d1ogmx2         170 FFFQTDGPEIYPNSVVHDVFWHV-----NDDAIKIYY-SGASVSRATIWKCHNDPIIQMGWTSRDISGVTIDTLNVIHTR  243 (373)
T ss_dssp             CSTTCCCCBCCTTCEEEEEEEEE-----SSCSEECCS-TTCEEEEEEEEECSSSCSEECCSSCCCEEEEEEEEEEEEECC
T ss_pred             CCCCCeeeeccCCEEEEeeEEec-----CCCEEEecC-CCEEEEEEEEECCCceeEEEeccCCCCcceeEEEeeEEECce
Confidence            42   112348999999999998     789999974 699999999987543  456543   2689999999876421


Q ss_pred             ------e----eEEEecC----CCCCCCcEEEEEEEeEEEecccceEEEEeec--CCCCeEEEEEeC
Q 015319          358 ------G----ISIGSLG----KDNTKACVSNITVRDVMMHNTMNGVRIKTWQ--VMIPSGTQCYNS  408 (409)
Q Consensus       358 ------G----isIGs~g----~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~--G~~g~v~~~~~~  408 (409)
                            +    ..+.+..    .....+.++||+|+|++|++..+++.+-.+.  ...+.+++|.++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ni~f~nI~~~~~~~~~i~~~~~~~~~~~~i~nV~i~  310 (373)
T d1ogmx2         244 YIKSETVVPSAIIGASPFYASGMSPDSRKSISMTVSNVVCEGLCPSLFRITPLQNYKNFVVKNVAFP  310 (373)
T ss_dssp             CSSCCTTTTCEEEEECCCSSSSCCCEEEEEEEEEEEEEEECSSBCEEEEECCSEEEEEEEEEEEEET
T ss_pred             eccccccccccccccccceeeeccCCCeEEEeEEEEeEEEECcccCeEEEEEcCCCCCCccceEEEE
Confidence                  1    1111110    0123466999999999999988777544431  133467777654

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=98.39  E-value=3.5e-07  Score=88.77  Aligned_cols=115  Identities=18%  Similarity=0.185  Sum_probs=85.7

Q ss_pred             EEeeeeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCC-CCCCCCCceeecCcccEEEEeeEEeeCCC-e--------
Q 015319          267 FYGSFNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSP-GDSPNTDGIHLQNSKDVLIHTSNLACGDD-C--------  336 (409)
Q Consensus       267 ~~~~~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~-~~~~n~DGI~l~~s~nV~I~n~~i~~gDD-~--------  336 (409)
                      ...+.+++|.|.+.... .|+|++.+|+||.|+|++|+.. ....+.|+|.+++++||.|++|.|.-+.| |        
T Consensus        85 ~~~~~~i~i~G~~~~~~-~~gl~i~~~~nViirnl~i~~~~~~~~~~D~i~~~~~~~vwIDH~s~s~~~d~~~~~~~~~~  163 (353)
T d1o88a_          85 KEFTKGITIIGANGSSA-NFGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDT  163 (353)
T ss_dssp             ESBCSCEEEEECTTCCB-SSEEEEESCCSEEEESCEEECCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGTC
T ss_pred             EecCCCEEEEcCCCccc-cceEEEeccceEEEeCcEEecCCCCCCCCcEEEEecccEEEEEccEEeccccccccccCccc
Confidence            34577888888777654 5999999999999999999853 44568899999999999999999975532 3        


Q ss_pred             -----EEeCCCceeEEEEEEEEcCC-CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          337 -----VSIQTGCSNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       337 -----Iai~sg~~nV~I~n~~~~~g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                           +-++-++.+|+|.+|.+.+. .+.-+|+..    ...-.+|+|.+|.+.++
T Consensus       164 ~~~~~~di~~~~~~vTis~n~~~~~~k~~l~g~~~----~~~~~~vT~hhN~~~~~  215 (353)
T d1o88a_         164 TFESAVDIKGASNTVTVSYNYIHGVKKVGLDGSSS----SDTGRNITYHHNYYNDV  215 (353)
T ss_dssp             SSCCSEEEESSCCEEEEESCEEEEEEECCEESSSS----SCCCCEEEEESCEEEEE
T ss_pred             cceeeEEeccCcccEEEECcccccccccceeCCcc----CcCCceEEEEeeEEcCC
Confidence                 33445578999999999863 345565531    11234788888888764

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=98.18  E-value=4.6e-06  Score=82.88  Aligned_cols=128  Identities=6%  Similarity=-0.126  Sum_probs=73.9

Q ss_pred             EEeeeeEEEeceEEecCCCC---------eEEeecCccEEEEeEEEeCCCC-----------CCCCCceeecCcccEEEE
Q 015319          267 FYGSFNVTVTGITIQNSPQC---------HLKFDNCIGVVVHDVSVSSPGD-----------SPNTDGIHLQNSKDVLIH  326 (409)
Q Consensus       267 ~~~~~nv~I~gvti~ns~~~---------~i~~~~~~nV~I~n~~I~s~~~-----------~~n~DGI~l~~s~nV~I~  326 (409)
                      ...+.+++|+++.+.+...-         .+....+.+.+|+++.|.....           ....++.......+..|+
T Consensus        97 ~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~n~~I~~n~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~~I~  176 (481)
T d1ofla_          97 AIYGSYNRITACVFDCFDEANSAYITTSLTEDGKVPQHCRIDHCSFTDKITFDQVINLNNTARAIKDGSVGGPAMYHRVD  176 (481)
T ss_dssp             EECSSSCEEESCEEESCCSSCSCSEEECCCTTCCCCCSCEEESCEEECCCSSSCSEEECSSCCCSCCCSCCCCCCCCEEE
T ss_pred             EeEeecceEeeeEeecccccccceeccceeEEEeeccceEEECceEecCCCCccEEEecCCCceeecCcccccccccEEE
Confidence            34556778888888764321         2334456788999999886421           011112222234567788


Q ss_pred             eeEEee------CCCeEEeCC---CceeEEEEEEEEcCCCe-eEEEecCCCCCCCcEEEEEEEeEEEecccceEEEEeec
Q 015319          327 TSNLAC------GDDCVSIQT---GCSNVYVHNVNCGPGHG-ISIGSLGKDNTKACVSNITVRDVMMHNTMNGVRIKTWQ  396 (409)
Q Consensus       327 n~~i~~------gDD~Iai~s---g~~nV~I~n~~~~~g~G-isIGs~g~~~~~~~v~nI~v~n~~~~~~~~Gi~Ikt~~  396 (409)
                      ++++..      ..+++.++.   ...+.+|+|+.+....| ..|.+..       -.+.+|+++++.++..++.+.  .
T Consensus       177 ~n~~~~~~~~gn~~~~i~~G~s~~~~sn~~v~nN~~~~~~g~~~ii~~~-------s~~n~I~nN~~~~~~ggi~~~--~  247 (481)
T d1ofla_         177 HCFFSNPQKPGNAGGGIRIGYYRNDIGRCLVDSNLFMRQDSEAEIITSK-------SQENVYYGNTYLNCQGTMNFR--H  247 (481)
T ss_dssp             SCEEEECCCSSSCCCSEEECSSTTCBCCCEEESCEEEEECSSSEEEEEE-------SBTCEEESCEEESCSSEEEEE--E
T ss_pred             eeEecCccccCCceeEEEeeeEeeccCCEEEEeeeEEccCCceEEEEec-------CCCcEEeeeEEecCcceEEEc--c
Confidence            888753      234565543   25688899988876332 2232210       135578999999888776654  3


Q ss_pred             CCCCeEE
Q 015319          397 VMIPSGT  403 (409)
Q Consensus       397 G~~g~v~  403 (409)
                      |....|+
T Consensus       248 g~~~~i~  254 (481)
T d1ofla_         248 GDHQVAI  254 (481)
T ss_dssp             CSSCEEE
T ss_pred             ccCcEEE
Confidence            4444444

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=98.10  E-value=9.7e-06  Score=78.10  Aligned_cols=112  Identities=17%  Similarity=0.228  Sum_probs=68.1

Q ss_pred             eEEEEeeeeEEEeceEEecCCCCe---EEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEee-CCCeEEe
Q 015319          264 ALRFYGSFNVTVTGITIQNSPQCH---LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLAC-GDDCVSI  339 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~~~~---i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~-gDD~Iai  339 (409)
                      .+.+..++||.|++++|.+.....   +......+.        ........|+|.+.+++||.|++|.+.. .|.++.+
T Consensus       107 ~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~gDai~i~~s~nvwIDH~s~s~~~D~~idi  178 (346)
T d1pxza_         107 CLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGV--------EPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDV  178 (346)
T ss_dssp             CEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEE--------EEECCCCCCSEEEESCEEEEEESCEEECCSSEEEEE
T ss_pred             eEEEecCCEEEEeceEEecCcccCCcccccccccCc--------cccccCCCceeeeecCceEEEECcEeeccccCceeE
Confidence            456778899999999998764221   111111110        0001236788888888888888888864 4777888


Q ss_pred             CCCceeEEEEEEEEcCCC-eeEEEecCCCCCCCcEEEEEEEeEEEe
Q 015319          340 QTGCSNVYVHNVNCGPGH-GISIGSLGKDNTKACVSNITVRDVMMH  384 (409)
Q Consensus       340 ~sg~~nV~I~n~~~~~g~-GisIGs~g~~~~~~~v~nI~v~n~~~~  384 (409)
                      +-++.+|+|.+|.+.... +..+|+..... ...-.+|++.+|.+.
T Consensus       179 ~~~s~~vTis~~~f~~~~~~~~~G~~~~~~-~~~~~~vT~hhN~~~  223 (346)
T d1pxza_         179 TLGSTGITISNNHFFNHHKVMLLGHDDTYD-DDKSMKVTVAFNQFG  223 (346)
T ss_dssp             ESSCEEEEEESCEEESEEEEEEESCCSSCG-GGGGCEEEEESCEEC
T ss_pred             ecCCEEEEEEeeEEccCccccccCCCcccc-cCCCceEEEEccccC
Confidence            777888888888887632 45555432211 112235555555553

>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate transeliminase
domain: Pectate transeliminase
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.04  E-value=4.4e-05  Score=72.36  Aligned_cols=86  Identities=12%  Similarity=0.001  Sum_probs=49.6

Q ss_pred             eeeEEEeceEEecCCCCeEEeec-CccEEEEeEEEeCCCC----CC--CCCceeecCcccEEEEeeEEee-CCCeEEeCC
Q 015319          270 SFNVTVTGITIQNSPQCHLKFDN-CIGVVVHDVSVSSPGD----SP--NTDGIHLQNSKDVLIHTSNLAC-GDDCVSIQT  341 (409)
Q Consensus       270 ~~nv~I~gvti~ns~~~~i~~~~-~~nV~I~n~~I~s~~~----~~--n~DGI~l~~s~nV~I~n~~i~~-gDD~Iai~s  341 (409)
                      ..+..|+++.+.+....++.+.. .....+.++.+.....    ..  ...++....+.+.+|++|.+.+ .++++.+..
T Consensus       136 ~~~~~i~n~~i~~~~~~g~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~G~~~~~  215 (400)
T d1ru4a_         136 GSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFD  215 (400)
T ss_dssp             SSSCEEESCEEESCSSCSEEECTTCCSCEEESCEEECCCCTTTTTSSCCSEEECTTCCSCCEEESCEEESCSSCSEECTT
T ss_pred             ccccccccceEecCCcceEEEeccccccEEEEeeEEeccccccccccceeeeEEecccccceeecceeeeccCcceeEEe
Confidence            45666777777766655555543 3445566665554321    11  2223333445677777777653 466777766


Q ss_pred             CceeEEEEEEEEcC
Q 015319          342 GCSNVYVHNVNCGP  355 (409)
Q Consensus       342 g~~nV~I~n~~~~~  355 (409)
                      ...++.|+||.+..
T Consensus       216 ~~~~~~i~nn~~~~  229 (400)
T d1ru4a_         216 SPQKVVIENSWAFR  229 (400)
T ss_dssp             CCSCCEEESCEEES
T ss_pred             cCCCEEEECeEEEc
Confidence            66777777776653

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=97.86  E-value=8.6e-05  Score=71.45  Aligned_cols=20  Identities=25%  Similarity=0.341  Sum_probs=14.5

Q ss_pred             eEEEEeeeeEEEeceEEecC
Q 015319          264 ALRFYGSFNVTVTGITIQNS  283 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns  283 (409)
                      .|.+.+++||.|++|+|+..
T Consensus        97 gl~i~~a~NVIirnl~ir~~  116 (355)
T d1pcla_          97 SLVIKGVKNVILRNLYIETP  116 (355)
T ss_pred             EEEEEccccEEEEeeEeecC
Confidence            46667778888888888643

>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type C [TaxId: 556]

Probab=97.80  E-value=0.00021  Score=68.57  Aligned_cols=92  Identities=13%  Similarity=0.070  Sum_probs=64.3

Q ss_pred             eeEEEEeeeeEEEeceEEecCCC-----CeEEeecCccEEEEeEEEeCCCC--------CCCCCceee--cCcccEEEEe
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQ-----CHLKFDNCIGVVVHDVSVSSPGD--------SPNTDGIHL--QNSKDVLIHT  327 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~-----~~i~~~~~~nV~I~n~~I~s~~~--------~~n~DGI~l--~~s~nV~I~n  327 (409)
                      ..|++.+|+||.|++++|...+.     .+|.+++|++|.|++|++....+        ..-+||...  ..+.+|+|.+
T Consensus       103 ~gl~i~~~~nViirnl~i~~~~~~~~~~D~i~~~~~~~vwIDH~s~s~~~d~~~~~~~~~~~~~~~~di~~~~~~vTis~  182 (353)
T d1o88a_         103 FGIWIKKSSDVVVQNMRIGYLPGGAKDGDMIRVDDSPNVWVDHNELFAANHECDGTPDNDTTFESAVDIKGASNTVTVSY  182 (353)
T ss_dssp             SEEEEESCCSEEEESCEEECCSCGGGTCCSEEEESCCSEEEESCEEECCSCCCTTCGGGTCSSCCSEEEESSCCEEEEES
T ss_pred             ceEEEeccceEEEeCcEEecCCCCCCCCcEEEEecccEEEEEccEEeccccccccccCccccceeeEEeccCcccEEEEC
Confidence            46888999999999999987653     45999999999999999986432        123444332  4678999999


Q ss_pred             eEEeeCCCeEEeCCC----ceeEEEEEEEEc
Q 015319          328 SNLACGDDCVSIQTG----CSNVYVHNVNCG  354 (409)
Q Consensus       328 ~~i~~gDD~Iai~sg----~~nV~I~n~~~~  354 (409)
                      +.|.....+..++.+    ..+|++++|.+.
T Consensus       183 n~~~~~~k~~l~g~~~~~~~~~vT~hhN~~~  213 (353)
T d1o88a_         183 NYIHGVKKVGLDGSSSSDTGRNITYHHNYYN  213 (353)
T ss_dssp             CEEEEEEECCEESSSSSCCCCEEEEESCEEE
T ss_pred             cccccccccceeCCccCcCCceEEEEeeEEc
Confidence            999864444444331    234555555443

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=97.62  E-value=0.00011  Score=70.84  Aligned_cols=61  Identities=20%  Similarity=0.192  Sum_probs=41.0

Q ss_pred             EeeeeEEEeceEEecCC------CCeEEeecCccEEEEeEEEeCCCCCCCCCceee--cCcccEEEEeeEEee
Q 015319          268 YGSFNVTVTGITIQNSP------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHL--QNSKDVLIHTSNLAC  332 (409)
Q Consensus       268 ~~~~nv~I~gvti~ns~------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l--~~s~nV~I~n~~i~~  332 (409)
                      .+++||.|++++|++..      ..+|.+..+++|.|++|++...    ..|++..  ..+.+|+|.+|.|..
T Consensus       130 ~~~~NVIirnl~ir~~~~~~~~~~Dai~i~~s~nvwIDH~s~s~~----~d~~~~~~~~~s~~vTvs~~~f~~  198 (359)
T d1qcxa_         130 SGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARI----GRQHIVLGTSADNRVTISYSLIDG  198 (359)
T ss_dssp             TTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEEE----SSCSEEECSSCCEEEEEESCEEEC
T ss_pred             eCCccEEEeCeEEecCCCCCCCCCCeEEeeCCCCEEEEeeecccc----CCCceEeeccCCCceEeeccEecc
Confidence            46788888888887543      2357777888888888888652    3345432  335678888887754

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=97.58  E-value=8.8e-05  Score=71.52  Aligned_cols=59  Identities=14%  Similarity=0.237  Sum_probs=32.6

Q ss_pred             eeeeEEEeceEEecCC------CCeEEeecCccEEEEeEEEeCCCCCCCCCcee--ecCcccEEEEeeEEe
Q 015319          269 GSFNVTVTGITIQNSP------QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIH--LQNSKDVLIHTSNLA  331 (409)
Q Consensus       269 ~~~nv~I~gvti~ns~------~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~--l~~s~nV~I~n~~i~  331 (409)
                      +++||.|++|+|++..      ..+|.+..+++|.|++|++...    ..+.+.  ...+.+|+|.+|.|.
T Consensus       131 ~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~s~nVwIDH~s~s~~----~d~~~~~~~~~s~~vTis~~~~~  197 (359)
T d1idka_         131 GAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARI----GRQHYVLGTSADNRVSLTNNYID  197 (359)
T ss_dssp             TCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEEE----SSCSEEECCCTTCEEEEESCEEE
T ss_pred             cCceEEEECcEEecCCCCCCCCCCeEEeeCCccEEEEeeeeccC----CCCceeeeccCCCceeeeceeee
Confidence            4666677777665432      1346666666666666666552    112221  234556666666664

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.50  E-value=0.00012  Score=71.54  Aligned_cols=116  Identities=14%  Similarity=0.197  Sum_probs=70.3

Q ss_pred             EEeeeeEEEec----eEEecCCCCeEEeecCccEEEEeEEEeCCCC---------------CCCCCceeecCcccEEEEe
Q 015319          267 FYGSFNVTVTG----ITIQNSPQCHLKFDNCIGVVVHDVSVSSPGD---------------SPNTDGIHLQNSKDVLIHT  327 (409)
Q Consensus       267 ~~~~~nv~I~g----vti~ns~~~~i~~~~~~nV~I~n~~I~s~~~---------------~~n~DGI~l~~s~nV~I~n  327 (409)
                      +.-..|.+|-|    .+|+.   .++.+ .++||.|+|++|+....               ....|+|.+.+++||.|++
T Consensus       123 i~V~SNkTIiG~G~~~~i~g---~gl~i-~a~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~s~~VWIDH  198 (399)
T d1bn8a_         123 VDIPANTTIVGSGTNAKVVG---GNFQI-KSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDH  198 (399)
T ss_dssp             EEECSSEEEEECTTCCEEES---CEEEE-CSEEEEEESCEEECCCCSSCEEETTSSSSCEEECCCCSEEEESCEEEEEES
T ss_pred             EecCCCceEEecCCCcEEec---cEEEE-eCceEEEeCeEEEcCcccccccccccccccCcCCCCceEEEecCccEEEEC
Confidence            33445666643    34443   24555 57888888888875421               1236888888888899999


Q ss_pred             eEEeeC------------------CCeEEeCCCceeEEEEEEEEcCC-CeeEEEecCCCCCCCcEEEEEEEeEEEecc
Q 015319          328 SNLACG------------------DDCVSIQTGCSNVYVHNVNCGPG-HGISIGSLGKDNTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       328 ~~i~~g------------------DD~Iai~sg~~nV~I~n~~~~~g-~GisIGs~g~~~~~~~v~nI~v~n~~~~~~  386 (409)
                      |.|..+                  |..+-++.++.+|+|.+|.+... .++-+|+...+.....-.+|+|.+|.+.++
T Consensus       199 ~t~s~~~~e~~~~~~~~~~~~~~~Dg~lDi~~gs~~VTvS~n~f~~h~k~~L~G~~d~~~~d~g~~~vT~hhN~f~~~  276 (399)
T d1bn8a_         199 CTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNI  276 (399)
T ss_dssp             CEEECTTCCGGGCCEETTEECCCCCCSEEEETTCEEEEEESCEEEEEEECCEECCCTTCGGGTTCCCEEEESCEEEEE
T ss_pred             ceeccCCcccccccccccccccccccceeecccceeEEeECccccCCcceeEecCCCCcccccCCceEEEEeeEecCc
Confidence            988643                  44566777788899998888763 234455432111111223577777766653

>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type B [TaxId: 5061]

Probab=97.36  E-value=0.00033  Score=67.43  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=61.7

Q ss_pred             eeEEEece----EEecCCCCeEEe-ecCccEEEEeEEEeCCCC--CCCCCceeecCcccEEEEeeEEe-eCCCeEE-eCC
Q 015319          271 FNVTVTGI----TIQNSPQCHLKF-DNCIGVVVHDVSVSSPGD--SPNTDGIHLQNSKDVLIHTSNLA-CGDDCVS-IQT  341 (409)
Q Consensus       271 ~nv~I~gv----ti~ns~~~~i~~-~~~~nV~I~n~~I~s~~~--~~n~DGI~l~~s~nV~I~n~~i~-~gDD~Ia-i~s  341 (409)
                      .|.+|.|.    .|..   +++.+ ..++||.|+|++|+....  ..+.|+|.+..++||.|++|.+. .+||++. ++.
T Consensus       108 sn~TI~G~g~~~~i~g---~g~~~~~~~~NVIirnl~ir~~~~~~~~~~Dai~i~~s~nvwIDH~s~s~~~d~~~~~~~~  184 (359)
T d1qcxa_         108 SNKSIVGQGTKGVIKG---KGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDDSDLVWIDHVTTARIGRQHIVLGTS  184 (359)
T ss_dssp             SSEEEEECTTCCEEES---CCEEEETTCCCEEEESCEEEEECTTEETSCCSEEEESCCCEEEESCEEEEESSCSEEECSS
T ss_pred             CCCeEEeccCCeEEEc---cceEEEeCCccEEEeCeEEecCCCCCCCCCCeEEeeCCCCEEEEeeeccccCCCceEeecc
Confidence            36666654    3433   24444 578999999999985322  24679999999999999999986 5688875 456


Q ss_pred             CceeEEEEEEEEcC
Q 015319          342 GCSNVYVHNVNCGP  355 (409)
Q Consensus       342 g~~nV~I~n~~~~~  355 (409)
                      +..+|+|.+|.+..
T Consensus       185 ~s~~vTvs~~~f~~  198 (359)
T d1qcxa_         185 ADNRVTISYSLIDG  198 (359)
T ss_dssp             CCEEEEEESCEEEC
T ss_pred             CCCceEeeccEecc
Confidence            67899999999975

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=97.26  E-value=0.00036  Score=67.14  Aligned_cols=96  Identities=18%  Similarity=0.324  Sum_probs=65.0

Q ss_pred             ecCccEEEEeEEEeCCCC-----------CCCCCceeec-CcccEEEEeeEEeeC------------------CCeEEeC
Q 015319          291 DNCIGVVVHDVSVSSPGD-----------SPNTDGIHLQ-NSKDVLIHTSNLACG------------------DDCVSIQ  340 (409)
Q Consensus       291 ~~~~nV~I~n~~I~s~~~-----------~~n~DGI~l~-~s~nV~I~n~~i~~g------------------DD~Iai~  340 (409)
                      ..+.||.|+|++|+...+           ....|+|.+. +++||.|++|.|..+                  |..+-++
T Consensus       111 ~~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~  190 (361)
T d1pe9a_         111 DGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIK  190 (361)
T ss_dssp             GTCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCCCCSEEEC
T ss_pred             cccceEEEEeEEeecCccCCCccccCCCcccCCCeeEEecCCceEEEEccEeccCCccccccccccCcceeeeeeeEEee
Confidence            356788899998886432           1246889885 588999999998743                  4456777


Q ss_pred             CCceeEEEEEEEEcC-CCeeEEEecCCC-CCCCcEEEEEEEeEEEecc
Q 015319          341 TGCSNVYVHNVNCGP-GHGISIGSLGKD-NTKACVSNITVRDVMMHNT  386 (409)
Q Consensus       341 sg~~nV~I~n~~~~~-g~GisIGs~g~~-~~~~~v~nI~v~n~~~~~~  386 (409)
                      -++++|+|.+|.+.. ..+.-+|+.-.. .....-.+|++.+|.+.++
T Consensus       191 ~~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~~~  238 (361)
T d1pe9a_         191 RGSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFNRV  238 (361)
T ss_dssp             TTCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEEEE
T ss_pred             cCccceEecCCcccCCCcceEeccCCCCccccCCcceEEEECccccCC
Confidence            778999999999876 335666642100 0012345788888888754

>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.20  E-value=0.0019  Score=62.72  Aligned_cols=70  Identities=11%  Similarity=0.160  Sum_probs=46.9

Q ss_pred             eEEEEeeeeEEEeceEEecCC-------------------CCeEEeecCccEEEEeEEEeCCCC------------CCCC
Q 015319          264 ALRFYGSFNVTVTGITIQNSP-------------------QCHLKFDNCIGVVVHDVSVSSPGD------------SPNT  312 (409)
Q Consensus       264 ~i~~~~~~nv~I~gvti~ns~-------------------~~~i~~~~~~nV~I~n~~I~s~~~------------~~n~  312 (409)
                      .|.+ +++||.|++|+|++..                   ..+|.+..+++|.|+.|++....+            ....
T Consensus       144 gl~i-~a~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~DaI~i~~s~~VWIDH~t~s~~~~e~~~~~~~~~~~~~~~  222 (399)
T d1bn8a_         144 NFQI-KSDNVIIRNIEFQDAYDYFPQWDPTDGSSGNWNSQYDNITINGGTHIWIDHCTFNDGSRPDSTSPKYYGRKYQHH  222 (399)
T ss_dssp             EEEE-CSEEEEEESCEEECCCCSSCEEETTSSSSCEEECCCCSEEEESCEEEEEESCEEECTTCCGGGCCEETTEECCCC
T ss_pred             EEEE-eCceEEEeCeEEEcCcccccccccccccccCcCCCCceEEEecCccEEEECceeccCCccccccccccccccccc
Confidence            3444 6788999999987543                   345888888899999998876431            1122


Q ss_pred             Cc-eee-cCcccEEEEeeEEeeCC
Q 015319          313 DG-IHL-QNSKDVLIHTSNLACGD  334 (409)
Q Consensus       313 DG-I~l-~~s~nV~I~n~~i~~gD  334 (409)
                      || +++ ..+.+|||.+|.|...+
T Consensus       223 Dg~lDi~~gs~~VTvS~n~f~~h~  246 (399)
T d1bn8a_         223 DGQTDASNGANYITMSYNYYHDHD  246 (399)
T ss_dssp             CCSEEEETTCEEEEEESCEEEEEE
T ss_pred             ccceeecccceeEEeECccccCCc
Confidence            43 333 35678899888887533

>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin lyase
domain: Pectin lyase
species: Aspergillus niger, type A [TaxId: 5061]

Probab=97.18  E-value=0.00042  Score=66.56  Aligned_cols=83  Identities=17%  Similarity=0.207  Sum_probs=62.2

Q ss_pred             eeeEEEece----EEecCCCCeEEe-ecCccEEEEeEEEeCCC--CCCCCCceeecCcccEEEEeeEEee-CCCeEEeC-
Q 015319          270 SFNVTVTGI----TIQNSPQCHLKF-DNCIGVVVHDVSVSSPG--DSPNTDGIHLQNSKDVLIHTSNLAC-GDDCVSIQ-  340 (409)
Q Consensus       270 ~~nv~I~gv----ti~ns~~~~i~~-~~~~nV~I~n~~I~s~~--~~~n~DGI~l~~s~nV~I~n~~i~~-gDD~Iai~-  340 (409)
                      ..|.+|.|.    +|..   .++.+ ..++||.|+|++|+...  ...+.|+|.+.+++||.|++|.|.. +|+.+... 
T Consensus       107 ~sn~TI~G~g~~~~i~g---~g~~i~~~~~NVIiRNl~i~~~~~~~~~~~DaI~i~~s~nVwIDH~s~s~~~d~~~~~~~  183 (359)
T d1idka_         107 TSNKSLIGEGSSGAIKG---KGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIGRQHYVLGT  183 (359)
T ss_dssp             CSSEEEEECTTTCEEES---CCEEECTTCEEEEEESCEEEEECTTEETSCCSEEECSCEEEEEESCEEEEESSCSEEECC
T ss_pred             CCCceEEeccCCeEEec---CceEEEecCceEEEECcEEecCCCCCCCCCCeEEeeCCccEEEEeeeeccCCCCceeeec
Confidence            357777654    4443   34555 46899999999998542  2246799999999999999999875 56666554 


Q ss_pred             CCceeEEEEEEEEcC
Q 015319          341 TGCSNVYVHNVNCGP  355 (409)
Q Consensus       341 sg~~nV~I~n~~~~~  355 (409)
                      .+..+|+|.||.+..
T Consensus       184 ~~s~~vTis~~~~~~  198 (359)
T d1idka_         184 SADNRVSLTNNYIDG  198 (359)
T ss_dssp             CTTCEEEEESCEEEC
T ss_pred             cCCCceeeeceeeec
Confidence            457899999999864

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=97.11  E-value=0.009  Score=56.05  Aligned_cols=78  Identities=10%  Similarity=0.037  Sum_probs=46.6

Q ss_pred             EeeeeEEEeceEEecCCCC----e-EEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCC
Q 015319          268 YGSFNVTVTGITIQNSPQC----H-LKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTG  342 (409)
Q Consensus       268 ~~~~nv~I~gvti~ns~~~----~-i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg  342 (409)
                      ..+++++++||+|+|....    . -.....+.+.+.+|.|..     ..|=+.....+ -..+||+|...-|=|. +. 
T Consensus        91 v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G-----~QDTL~~~~gr-~yf~~c~IeG~vDFIf-G~-  162 (319)
T d1gq8a_          91 AVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILA-----YQDSLYVHSNR-QFFINCFIAGTVDFIF-GN-  162 (319)
T ss_dssp             ECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEEC-----STTCEEECSSE-EEEESCEEEESSSCEE-ES-
T ss_pred             eecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecc-----cCCeeEECCCC-EEEEeeEEEeeccEEe-cC-
Confidence            3557788888888886421    1 123456788899999988     45555554443 4667777766544442 22 


Q ss_pred             ceeEEEEEEEEc
Q 015319          343 CSNVYVHNVNCG  354 (409)
Q Consensus       343 ~~nV~I~n~~~~  354 (409)
                       -...|++|++.
T Consensus       163 -~~a~f~~c~i~  173 (319)
T d1gq8a_         163 -AAVVLQDCDIH  173 (319)
T ss_dssp             -CEEEEESCEEE
T ss_pred             -ceeEeecceee
Confidence             13445555554

>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=97.06  E-value=0.0028  Score=60.39  Aligned_cols=117  Identities=12%  Similarity=0.076  Sum_probs=78.3

Q ss_pred             eeEEEEeeeeEEEeceEEecCCCCeEEee-cCccEEEEeEEEeCCCCC---CCCCceeecCcccEEEEeeEEeeCCC-eE
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQCHLKFD-NCIGVVVHDVSVSSPGDS---PNTDGIHLQNSKDVLIHTSNLACGDD-CV  337 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~~~i~~~-~~~nV~I~n~~I~s~~~~---~n~DGI~l~~s~nV~I~n~~i~~gDD-~I  337 (409)
                      .++.+.+++||.|+++++.+...-.+.+. .+++|+|+++.|......   ...|.-......+|+++++.+...-+ ..
T Consensus       151 Dai~i~~s~nvwIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~  230 (346)
T d1pxza_         151 DAITMRNVTNAWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRM  230 (346)
T ss_dssp             CSEEEESCEEEEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECT
T ss_pred             ceeeeecCceEEEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCC
Confidence            47899999999999999998877677764 589999999999764210   01111111233579999998854311 11


Q ss_pred             EeCCCceeEEEEEEEEcC--CCeeEEEecCCCCCCCcEEEEEEEeEEEecccce
Q 015319          338 SIQTGCSNVYVHNVNCGP--GHGISIGSLGKDNTKACVSNITVRDVMMHNTMNG  389 (409)
Q Consensus       338 ai~sg~~nV~I~n~~~~~--g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~~G  389 (409)
                      .+.. ...++|.|+.+.+  .+++..+..         ..|.+++|+|.+..+.
T Consensus       231 p~~r-~g~~hv~NN~~~n~~~~~~~~~~~---------~~v~~e~N~F~~~~~~  274 (346)
T d1pxza_         231 PRAR-YGLVHVANNNYDPWNIYAIGGSSN---------PTILSEGNSFTAPSES  274 (346)
T ss_dssp             TEEE-SSEEEEESCEECCCSSCSEEEESC---------CEEEEESCEEECCSCG
T ss_pred             Cccc-cceEEEECcEeecCccEEEeccCc---------eEEEEEeeEEECCCCc
Confidence            1111 2478899999987  345654432         4889999999876544

>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type A [TaxId: 556]

Probab=96.28  E-value=0.011  Score=56.38  Aligned_cols=86  Identities=21%  Similarity=0.189  Sum_probs=46.4

Q ss_pred             eeeeEEEeceEEecCC---------------CCeEEee-cCccEEEEeEEEeCCCC------------CCCCCce-ee-c
Q 015319          269 GSFNVTVTGITIQNSP---------------QCHLKFD-NCIGVVVHDVSVSSPGD------------SPNTDGI-HL-Q  318 (409)
Q Consensus       269 ~~~nv~I~gvti~ns~---------------~~~i~~~-~~~nV~I~n~~I~s~~~------------~~n~DGI-~l-~  318 (409)
                      +++||.|++++|++..               ...|.+. .+++|.|+.|++....+            ....||+ ++ .
T Consensus       112 ~~~NVIiRnl~ir~~~~~~~~~~~~~~~~~~~Dai~i~~~s~~VwIDH~s~s~~~~~~~~~~~~~~~~~~~~Dg~~di~~  191 (361)
T d1pe9a_         112 GTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKR  191 (361)
T ss_dssp             TCEEEEEESCEEECCCCSSCEEETTTEEECCCCSEEEETTCEEEEEESCEEECTTSCGGGCCEETTEECCCCCCSEEECT
T ss_pred             ccceEEEEeEEeecCccCCCccccCCCcccCCCeeEEecCCceEEEEccEeccCCccccccccccCcceeeeeeeEEeec
Confidence            4567777777776432               2345554 46777777777765321            0122443 23 2


Q ss_pred             CcccEEEEeeEEeeCCCeEEeCCC---------ceeEEEEEEEEc
Q 015319          319 NSKDVLIHTSNLACGDDCVSIQTG---------CSNVYVHNVNCG  354 (409)
Q Consensus       319 ~s~nV~I~n~~i~~gDD~Iai~sg---------~~nV~I~n~~~~  354 (409)
                      .+++|||.+|.|.....+..++..         ..+|++++|.+.
T Consensus       192 ~s~~vTiS~~~f~~h~~~~l~G~~d~~~~~d~g~~~vT~hhN~~~  236 (361)
T d1pe9a_         192 GSDYVTISNSLIDQHDKTMLIGHSDSNGSQDKGKLHVTLFNNVFN  236 (361)
T ss_dssp             TCEEEEEESCEEEEEEECEEESCCTTCHHHHTTCCEEEEESCEEE
T ss_pred             CccceEecCCcccCCCcceEeccCCCCccccCCcceEEEECcccc
Confidence            456777777777654444444321         235666555444

>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.20  E-value=0.01  Score=56.23  Aligned_cols=44  Identities=14%  Similarity=0.197  Sum_probs=28.7

Q ss_pred             cHHHHHHHHHHHhhcC-CcEEEECCceEEEeCCcccCCCccccceEEEecc
Q 015319          125 DTKAFEAAWAAACKVE-ASIMVVPAESVFLVGPMSFSGPYCQANIIFQLDG  174 (409)
Q Consensus       125 dT~Aiq~Ai~~a~~~g-g~~v~vP~G~~y~~~~i~l~g~~~~s~~~l~l~G  174 (409)
                      +-..||+||+++.... .-+|+|.+| +|.- .|.+.    +++++|+.+|
T Consensus        17 ~f~TIq~AI~a~p~~~~~~vI~I~~G-~Y~E-~V~I~----k~~itl~G~~   61 (342)
T d1qjva_          17 TFKTIADAIASAPAGSTPFVILIKNG-VYNE-RLTIT----RNNLHLKGES   61 (342)
T ss_dssp             CBSSHHHHHHTSCSSSSCEEEEECSE-EECC-CEEEC----STTEEEEESC
T ss_pred             CchhHHHHHHhCccCCceEEEEEcCe-EEEE-EEEEc----CCCeEEEEcC
Confidence            6778999998776532 236899999 8852 34442    4566665553

>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Erwinia chrysanthemi, type E [TaxId: 556]

Probab=94.53  E-value=0.64  Score=43.35  Aligned_cols=116  Identities=16%  Similarity=0.078  Sum_probs=67.9

Q ss_pred             eeEEEEeeeeEEEeceEEecCCC-----------------CeEEe-ecCccEEEEeEEEeCCCCC----CC-CCceeecC
Q 015319          263 TALRFYGSFNVTVTGITIQNSPQ-----------------CHLKF-DNCIGVVVHDVSVSSPGDS----PN-TDGIHLQN  319 (409)
Q Consensus       263 ~~i~~~~~~nv~I~gvti~ns~~-----------------~~i~~-~~~~nV~I~n~~I~s~~~~----~n-~DGI~l~~  319 (409)
                      .+|.+.+++||-|+.+++.....                 +.+++ ..+++|+|.++.|......    .. .+......
T Consensus       134 D~i~~~~~~~vwIDHcs~s~~~d~~~~~~~~~~~~~~~~dg~~d~~~~s~~vTiS~~~~~~~~~~~l~G~~~~~~~~~~~  213 (355)
T d1pcla_         134 DAAVIDNSTNVWVDHVTISDGSFTDDKYTTKDGEKYVQHDGALDIKKGSDYVTISYSRFELHDKTILIGHSDSNGSQDSG  213 (355)
T ss_pred             ceEEecCCccEEEECcccccCcccccccccccccccccccceeeeccceeeEEEeeeecCCcccceeecCCCCCccccCC
Confidence            57888899999999999875431                 12333 2467899999888764221    11 11111233


Q ss_pred             cccEEEEeeEEeeC-CCeEEeCCCceeEEEEEEEEcC--CCe-----eEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          320 SKDVLIHTSNLACG-DDCVSIQTGCSNVYVHNVNCGP--GHG-----ISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       320 s~nV~I~n~~i~~g-DD~Iai~sg~~nV~I~n~~~~~--g~G-----isIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      ..+|+++++.+.+. ...=.++.|  .+.|-|+.+..  ++.     .+++.-       .=..|.+++|+|....
T Consensus       214 ~~~vT~hhNl~~~~~~R~P~~r~G--~~hv~NN~~~n~~~~~~~~~~y~~~~~-------~~~~v~~e~NyF~~~~  280 (355)
T d1pcla_         214 KLRVTFHNNVFDRVTERAPRVRFG--SIHAYNNVYLGDVKHSVYPYLYSFGLG-------TSGSILSESNSFTLSN  280 (355)
T ss_pred             cceEEEecccccCCcccCCccccc--EEEEECcEEECCCCcccccceeeeccC-------cCceEEEeCCEEECCC
Confidence            56899988888653 223233333  46777777665  221     233221       1136889999988653

>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=87.37  E-value=1.2  Score=40.85  Aligned_cols=69  Identities=9%  Similarity=0.158  Sum_probs=50.5

Q ss_pred             cCccEEEEeEEEeCCCCCC--CCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEEEEEcCCCeeEEEe
Q 015319          292 NCIGVVVHDVSVSSPGDSP--NTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHNVNCGPGHGISIGS  363 (409)
Q Consensus       292 ~~~nV~I~n~~I~s~~~~~--n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n~~~~~g~GisIGs  363 (409)
                      ..+++.++|++|.+.....  .+-.+.+. ...+.+.+|.|....|.+....|  .-+++||.+++.-.+=+|.
T Consensus        92 ~~~~f~a~nitf~Nt~g~~~~QAvAl~v~-gd~~~fy~c~f~G~QDTL~~~~g--r~yf~~c~IeG~vDFIfG~  162 (319)
T d1gq8a_          92 VGAGFLARDITFQNTAGAAKHQAVALRVG-SDLSAFYRCDILAYQDSLYVHSN--RQFFINCFIAGTVDFIFGN  162 (319)
T ss_dssp             CSTTCEEEEEEEEECCCGGGCCCCSEEEC-CTTEEEEEEEEECSTTCEEECSS--EEEEESCEEEESSSCEEES
T ss_pred             ecCCeEEEeeEEEeCCCCCCCcEEEEEec-CcceEEEcceecccCCeeEECCC--CEEEEeeEEEeeccEEecC
Confidence            4568889999999854222  33344444 46899999999998899988775  5699999999865555554

>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Pectate lyase
species: Bacillus sp., strain ksmp15 [TaxId: 1409]

Probab=85.69  E-value=5.4  Score=33.79  Aligned_cols=107  Identities=12%  Similarity=0.111  Sum_probs=67.5

Q ss_pred             eeEEEeceEEecCCCCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeCCCeEEeCCCceeEEEEE
Q 015319          271 FNVTVTGITIQNSPQCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACGDDCVSIQTGCSNVYVHN  350 (409)
Q Consensus       271 ~nv~I~gvti~ns~~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~gDD~Iai~sg~~nV~I~n  350 (409)
                      ++.+|+++.|-....-+||...  +.+|+|+....    --.|.+-+.++..++|.+.-..+.+|=|.=..+.-.+.|+|
T Consensus        48 ~GaTlkNviIG~~~adGIHc~G--~ctl~NV~wed----VcEDA~T~k~~gt~~I~gGgA~~A~DKV~Q~Ng~gt~~I~n  121 (197)
T d1ee6a_          48 AGASLKNVVIGAPAADGVHCYG--DCTITNVIWED----VGEDALTLKSSGTVNISGGAAYKAYDKVFQINAAGTINIRN  121 (197)
T ss_dssp             TTEEEEEEEECSSCTTCEEEES--CEEEEEEEESS----CCSCSEEEEESEEEEEESCEEEEEEEEEEEECSSEEEEEES
T ss_pred             CCCEEEEEEEcCCCCceEEEeC--cEEEEEEEeee----cccccceecCCceEEEECCEecCCCccEEEECCCCcEEEee
Confidence            3567888888655566777653  46788887776    46777777777778888777776666555555567777877


Q ss_pred             EEEcCCCeeEEEecCCCCCCCcEEEEEEEeEEEeccc
Q 015319          351 VNCGPGHGISIGSLGKDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       351 ~~~~~g~GisIGs~g~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      .+..+ .|--+-|.|.   ...-.++.|+++.+.+..
T Consensus       122 F~v~~-~GKl~RScGn---c~~~~~~~v~~~~~~~~~  154 (197)
T d1ee6a_         122 FRADD-IGKLVRQNGG---TTYKVVMNVENCNISRVK  154 (197)
T ss_dssp             CEEEE-EEEEEEECTT---CCSCEEEEEESCEEEEEE
T ss_pred             EEEec-CCEEEEeCCC---CCcceEEEEEeccceecc
Confidence            76665 4433334331   111245556666665543

>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Chondroitinase B
domain: Chondroitinase B
species: Pedobacter heparinus [TaxId: 984]

Probab=85.34  E-value=1.2  Score=42.36  Aligned_cols=110  Identities=5%  Similarity=-0.058  Sum_probs=68.3

Q ss_pred             eeEEEeceEEecCC-CCeEEeecCccEEEEeEEEeCCCCCCCCCceeecCcccEEEEeeEEeeC-CC----eEEeCCCce
Q 015319          271 FNVTVTGITIQNSP-QCHLKFDNCIGVVVHDVSVSSPGDSPNTDGIHLQNSKDVLIHTSNLACG-DD----CVSIQTGCS  344 (409)
Q Consensus       271 ~nv~I~gvti~ns~-~~~i~~~~~~nV~I~n~~I~s~~~~~n~DGI~l~~s~nV~I~n~~i~~g-DD----~Iai~sg~~  344 (409)
                      .+.+|++-.+.++. ...+....+.+.+|++.+|..     +..|+.+..+.+.+|+++.|... .+    +|.+..  +
T Consensus       203 sn~~v~nN~~~~~~g~~~ii~~~s~~n~I~nN~~~~-----~~ggi~~~~g~~~~i~~N~~~~n~~~~~~gGi~v~~--~  275 (481)
T d1ofla_         203 GRCLVDSNLFMRQDSEAEIITSKSQENVYYGNTYLN-----CQGTMNFRHGDHQVAINNFYIGNDQRFGYGGMFVWG--S  275 (481)
T ss_dssp             CCCEEESCEEEEECSSSEEEEEESBTCEEESCEEES-----CSSEEEEEECSSCEEESCEEEECSSSSCBCCEEECS--B
T ss_pred             CCEEEEeeeEEccCCceEEEEecCCCcEEeeeEEec-----CcceEEEccccCcEEECCEEECCCCcCccceEEEEc--C
Confidence            45566666665443 334666677888888888877     55788887788888888887532 22    455544  4


Q ss_pred             eEEEEEEEEcCC-----C--eeEEEecC-CCCCCCcEEEEEEEeEEEeccc
Q 015319          345 NVYVHNVNCGPG-----H--GISIGSLG-KDNTKACVSNITVRDVMMHNTM  387 (409)
Q Consensus       345 nV~I~n~~~~~g-----~--GisIGs~g-~~~~~~~v~nI~v~n~~~~~~~  387 (409)
                      +.+|+|+.+.+.     .  ++..+..+ .......+.|+++.++++.++.
T Consensus       276 ~~~I~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~N~~~n~~  326 (481)
T d1ofla_         276 RHVIACNYFELSETIKSRGNAALYLNPGAMASEHALAFDMLIANNAFINVN  326 (481)
T ss_dssp             SCEEESCEEEESSBCGGGTSEEEEECCBCTTSTTCCCBSEEEESCEEESCS
T ss_pred             CeEEECcEEECCCCccccccceEEcCCCCcccccccccccEEECCEEECCC
Confidence            567778877652     1  12111111 0112345789999999999763