Citrus Sinensis ID: 015324

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MEEQAENRNKRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQSPSSDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE
Secondary Structure (PSIPRED)
cHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHccccccccccEEEEccHHHHHHHHHccccccccHHHHHHHHHHHcccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHcccccccEEcHHHHcccccccccccEEEEcccccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHccccHHcccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccHcccccccccccccccccccccccccccEEcccccccccEEEcHHHHHHccccccccHHHHHHHHHHHHHHccccHHHcccEEEEEHHHHHHHHHccccccccHHHHHHHHHHHcccccEccccEEEEEcccc
Coil and Loop (DISEMBL)
MEEQAENRNkrklnidweevlpgrnddvpaelivkksgpptpaqksvpmsddpgsgeeldrqipdqELGVRIARMKDTYSkvrhclpdkgkKILATVTRLEKECERRrlagavpvcldidgcdkltqspssdcftqrtpspqiqskssFTSVFREKMEENRDCREANAFDKELSILAhcdrrkmrsdgdlsqrgrqnvrsssrkwpfhkgdksfnsngsqkdrasltcpshqsgensssclpkkkesfevlpsknprlrkeqnlvlldedespvedaseesegslhietTEQADEFAECMIdakiyypsrvdpesveicytdinhlapaayltspIMNFYIRYLQlqasptnrairdchfFNTYFYSKLKEAvshkggdkdsFFIKFRRWWKgvnifqksyvlipihee
Flexible Loop (DISEMBL)
meeqaenrnkrklnidweevlpgrnDDVPAELIVKksgpptpaqksvpmsddpgsgeeldrqipdqeLGVRIARMKdtyskvrhclpdkgkkilATVTRLEKEcerrrlagavpvcLDIDGCDKLTQSPSSDcftqrtpspqiqskssftSVFREKMEENrdcreanafdkelsilahcdrrkmrsdgdlsqrgrqnvrsssrkwpfhkgdksfnsngsqKDRASltcpshqsgensssclpkkkesfevlpsknprlrkeqnlvlldedespvedaseesegslhiETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEavshkggdkDSFFIKFRRWWKgvnifqksyvlipihee
Low Complexity Region (SEG)
MEEQAENRNKRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQSPSSDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE
Disordered region (IsUnstruct)
********************************************************************GVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKL*************************************************************************************************************************************************************************EFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPI***
Disordered Region (DISOPRED)
***************DWEEVLP*************************************************************************************************************************************************************************************************************************************************************************************MIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH*GGD*DSFFIKFRRWWKGVNIFQKSYVLIPIHE*
Disordered Region (DISEMBL)
**********RKLNIDWEEVLPGRNDDVPAELIVKKSG*********************DRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQS*******************SFTSVFREKMEENRDCREANAFDKELSILAHCDRR**********************WPFHKGDKSF***************************PKKKESFEVLPSKNPRLRKEQNLVLLD******************IETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE
Disordered Region (DISPRO)
**********RKLNIDWEEVLPGRNDDVPAELIVKKS*******************EELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLA********************************************************************************************************************************************************************************************CMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEQAENRNKRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQSPSSDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
Q2PS26	584	Ubiquitin-like-specific p	yes	no	0.909	0.636	0.327	3e-46
Q8RWN0	571	Ubiquitin-like-specific p	no	no	0.880	0.630	0.303	2e-36
O13769	638	Ubiquitin-like-specific p	yes	no	0.207	0.133	0.316	6e-10
D3ZF42	1037	Sentrin-specific protease	no	no	0.251	0.099	0.254	9e-07
Q9BQF6	1050	Sentrin-specific protease	no	no	0.264	0.102	0.243	1e-06
Q8BUH8	1037	Sentrin-specific protease	no	no	0.251	0.099	0.254	1e-06
Q8L7S0	931	Probable ubiquitin-like-s	no	no	0.249	0.109	0.252	1e-06
Q91ZX6	588	Sentrin-specific protease	no	no	0.195	0.136	0.336	2e-06
Q9HC62	589	Sentrin-specific protease	no	no	0.185	0.129	0.333	2e-06
Q5R7K7	589	Sentrin-specific protease	yes	no	0.185	0.129	0.333	2e-06

>sp|Q2PS26|ULP1D_ARATH Ubiquitin-like-specific protease 1D OS=Arabidopsis thaliana GN=ULP1D PE=1 SV=1

 Score =  186 bits (472), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 147/449 (32%), Positives = 217/449 (48%), Gaps = 77/449 (17%)

Query: 10  KRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELG 69
           K+   IDW   +  + D+VP EL +  +  PTP       SDD     +L   + D++L 
Sbjct: 16  KKDFVIDWSSAM-DKEDEVP-ELEIVNTTKPTPPPPPTFFSDDQTDSPKL---LTDRDLD 70

Query: 70  VRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGA----------------- 112
            ++ R K   + +   LPDKG+KI   +  LE+E +RR L G+                 
Sbjct: 71  EQLERKKAILT-LGPGLPDKGEKIRLKIADLEEEKQRRVLEGSKMEVDRSSKVVSSTSSG 129

Query: 113 ---VPVCLDIDGCDKLTQSPSSDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAF 169
              +P    +        + S D   Q     +  S+S+F++VF +      D +   AF
Sbjct: 130 SDVLPQGNAVSKDTSRGNADSKDTSRQGNADSKEVSRSTFSAVFSKP---KTDSQSKKAF 186

Query: 170 DKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKW--------------PFHKGDKSFN 215
            KEL  L  C+RRK ++       GR+ V   S  W               F  G K   
Sbjct: 187 GKELEDLG-CERRKHKA-------GRKPVTRLSNGWRLLPDVGKAEHSAKQFDSGLKESK 238

Query: 216 SNGSQKDRASLTCPSHQSG---------------ENSSSCLPKKKESFEVLPSKNPRLRK 260
            N   K+      P   S                 ++S     ++ S+E  PS++ R RK
Sbjct: 239 GNKKSKEPYGKKRPMESSTYSLIDDDDDDDDDDDNDTSGHETPREWSWEKSPSQSSRRRK 298

Query: 261 EQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICY 320
           +    +++ DE       EE++ S      EQA E  E +    I YP+R DP  V++C 
Sbjct: 299 KSEDTVINVDE-------EEAQPST---VAEQAAELPEGL-QEDICYPTRDDPHFVQVCL 347

Query: 321 TDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDK 380
            D+  LAP  YLTSP+MNFY+R+LQ Q S +N+   DCHFFNTYFY KL +AV++KG DK
Sbjct: 348 KDLECLAPREYLTSPVMNFYMRFLQQQISSSNQISADCHFFNTYFYKKLSDAVTYKGNDK 407

Query: 381 DSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409
           D+FF++FRRWWKG+++F+K+Y+ IPIHE+
Sbjct: 408 DAFFVRFRRWWKGIDLFRKAYIFIPIHED 436

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Protease activity mainly directed at deconjugating SUM1 and SUM2 from their target proteins. Regulates salt stress responses and flowering time. Redundant with ULP1C.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8

>sp|Q8RWN0|ULP1C_ARATH Ubiquitin-like-specific protease 1C OS=Arabidopsis thaliana GN=ULP1C PE=1 SV=1

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 137/451 (30%), Positives = 202/451 (44%), Gaps = 91/451 (20%)

Query: 10  KRKLNIDWEEVLPGRNDDVP-AELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQEL 68
           K  LNIDW++ L   +++VP  E+I     PP     S     +P       R + D EL
Sbjct: 14  KTMLNIDWDDALG--DEEVPELEIIATDKIPPREPTLS---GYEPAVSV---RSLRDNEL 65

Query: 69  GVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQS 128
              + R +   +++   L DKG+KI   +  LE E +RR       +    +GC  L + 
Sbjct: 66  DDHLKRQRSLLTRLGDKLADKGEKIRNRIGELEYEKQRRMFQQRTKMQDADNGCQILEKP 125

Query: 129 PSSDCFT-----------QRTPSPQIQSKSSFTSVFREKM-------------------- 157
            SSD F            Q T   +  S+S+F + F + +                    
Sbjct: 126 KSSDVFMRASTASKDTSGQGTSGSKDVSRSTFAAHFSDNLKMGPQPVKLVNDKLQDLGRG 185

Query: 158 ----EENRD-CREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDK 212
               + NRD   E N   + L  L+ C            +   +N  S S+     KGD+
Sbjct: 186 SWISKANRDSIIEKNNVWRSLPRLSKC------------KVSLKNFYSESKD---PKGDR 230

Query: 213 SFN-SNGSQKDRAS----LTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQN--LV 265
             N + G  K   S    L        +        +  S +  P ++   RK+ +  ++
Sbjct: 231 RPNEAYGKGKPNESSPYLLVDDDDGDDDKVIGYETPRHWSLKASPLQSSSCRKKSDDKVI 290

Query: 266 LLDEDE--SP--VEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPES---VEI 318
            LDEDE  SP  VE+A E  EG                 +   IYYPS    +    V++
Sbjct: 291 NLDEDEPLSPMVVEEACELPEG-----------------LPEDIYYPSSDQSDGRDLVQV 333

Query: 319 CYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGG 378
              D+  L+P  YLTSP++NFYIRY+Q      ++   +CHFFNT+FY KL EAVS+KG 
Sbjct: 334 SLKDLKCLSPGEYLTSPVINFYIRYVQHHVFSADKTAANCHFFNTFFYKKLTEAVSYKGN 393

Query: 379 DKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409
           D+D++F+KFRRWWKG ++F KSY+ IPIHE+
Sbjct: 394 DRDAYFVKFRRWWKGFDLFCKSYIFIPIHED 424

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Protease activity mainly directed at deconjugating SUM1 and SUM2 from their target proteins. Regulates salt stress responses and flowering time. Redundant with ULP1D.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|O13769|ULP2_SCHPO Ubiquitin-like-specific protease 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp2 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 16/101 (15%)

Query: 315 SVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAI-RDCHFFNTYFYSKLKEA- 372
           S+ I  TD+  L    +L   I++FY+RYL  +    N ++  D H FNT+FY++L    
Sbjct: 346 SIAITNTDLTRLNEGEFLNDTIVDFYLRYLYCKLQTQNPSLANDTHIFNTFFYNRLTSKD 405

Query: 373 -----VSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE 408
                + H+G          R+W + V++F K Y+++PI+E
Sbjct: 406 KDGKRLGHRG---------VRKWTQKVDLFHKKYIIVPINE 437

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|D3ZF42|SENP7_RAT Sentrin-specific protease 7 OS=Rattus norvegicus GN=Senp7 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTY 364
           I YP       + +   D+  L    +L   I++FY++YL L+ + ++  +   H F+++
Sbjct: 736 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLLLEKA-SDELVERSHIFSSF 794

Query: 365 FYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHE 408
           FY  L    ++   D     +  RR      W + +NIF K Y+ +P++E
Sbjct: 795 FYKCLTRKENNLTEDNPDLSVAQRRHRRVRTWTRHINIFNKDYIFVPVNE 844

Protease that deconjugates SUMO2 and SUMO3 from targeted proteins, but not SUMO1. Catalyzes the deconjugation of poly-SUMO2 and poly-SUMO3 chains. Has very low efficiency in processing full-length SUMO proteins to their mature forms.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q9BQF6|SENP7_HUMAN Sentrin-specific protease 7 OS=Homo sapiens GN=SENP7 PE=1 SV=4

 Score = 55.1 bits (131), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 7/115 (6%)

Query: 300 MIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCH 359
           ++   I YP       + +   D+  L    +L   I++FY++YL L+ + ++  +   H
Sbjct: 744 LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKA-SDELVERSH 802

Query: 360 FFNTYFYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHE 408
            F+++FY  L    ++   D  +  +  RR      W + +NIF K Y+ +P++E
Sbjct: 803 IFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNE 857

Protease that deconjugates SUMO2 and SUMO3 from targeted proteins, but not SUMO1. Catalyzes the deconjugation of poly-SUMO2 and poly-SUMO3 chains. Has very low efficiency in processing full-length SUMO proteins to their mature forms.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q8BUH8|SENP7_MOUSE Sentrin-specific protease 7 OS=Mus musculus GN=Senp7 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 7/110 (6%)

Query: 305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTY 364
           I YP       + +   D+  L    +L   I++FY++YL L+ + ++  +   H F+++
Sbjct: 736 IVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLLLEKA-SDELVERSHIFSSF 794

Query: 365 FYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHE 408
           FY  L    ++   D     +  RR      W + +NIF K Y+ +P++E
Sbjct: 795 FYKCLTRKENNLTEDNPDLSVAQRRHRRVRTWTRHINIFNKDYIFVPVNE 844

Protease that deconjugates SUMO2 and SUMO3 from targeted proteins, but not SUMO1. Catalyzes the deconjugation of poly-SUMO2 and poly-SUMO3 chains. Has very low efficiency in processing full-length SUMO proteins to their mature forms.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q8L7S0|ULP2B_ARATH Probable ubiquitin-like-specific protease 2B OS=Arabidopsis thaliana GN=ULP2B PE=2 SV=3

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTY 364
           + YP + DP++V IC  D+  L P  ++   I++FYI YL+ Q     +          +
Sbjct: 384 VVYP-KGDPDAVSICKRDVELLQPETFVNDTIIDFYINYLKNQIQTEEKHRFHFFNSFFF 442

Query: 365 FYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
                 +       D  + F++ R+W + V++F K Y+ +P++
Sbjct: 443 RKLADLDKDPSSIADGKAAFLRVRKWTRKVDMFGKDYIFVPVN 485

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q91ZX6|SENP2_MOUSE Sentrin-specific protease 2 OS=Mus musculus GN=Senp2 PE=1 SV=2

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 12/92 (13%)

Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
           + I   DI  L    +L   ++NFY+  L  ++    +     H F+T+FY KLK     
Sbjct: 394 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERSK--KQGYPALHAFSTFFYPKLKS---- 447

Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
            GG     +   +RW KGVN+F++  VL+PIH
Sbjct: 448 -GG-----YQAVKRWTKGVNLFEQELVLVPIH 473

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. May down-regulate CTNNB1 levels and thereby modulate the Wnt pathway (By similarity). Isoform 3 activates transcription.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q9HC62|SENP2_HUMAN Sentrin-specific protease 2 OS=Homo sapiens GN=SENP2 PE=1 SV=3

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 20/96 (20%)

Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 371
           + I   DI  L    +L   ++NFY+  L    + Q  P        H F+T+FY KLK 
Sbjct: 395 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 448

Query: 372 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
                GG     +   +RW KGVN+F++  +L+PIH
Sbjct: 449 -----GG-----YQAVKRWTKGVNLFEQEIILVPIH 474

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. May down-regulate CTNNB1 levels and thereby modulate the Wnt pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

>sp|Q5R7K7|SENP2_PONAB Sentrin-specific protease 2 OS=Pongo abelii GN=SENP2 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 20/96 (20%)

Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 371
           + I   DI  L    +L   ++NFY+  L    + Q  P        H F+T+FY KLK 
Sbjct: 395 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 448

Query: 372 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
                GG     +   +RW KGVN+F++  +L+PIH
Sbjct: 449 -----GG-----YQAVKRWTKGVNLFEQEIILVPIH 474

Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMO1, SUMO2 and SUMO3 to their mature forms and deconjugation of SUMO1, SUMO2 and SUMO3 from targeted proteins. May down-regulate CTNNB1 levels and thereby modulate the Wnt pathway.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
356565950	586	PREDICTED: ubiquitin-like-specific prote	0.853	0.595	0.428	1e-59
356524061	594	PREDICTED: LOW QUALITY PROTEIN: ubiquiti	0.941	0.648	0.393	4e-59
255568770	283	sentrin/sumo-specific protease, putative	0.293	0.424	0.783	1e-51
145336892	584	ubiquitin-like-specific protease 1D [Ara	0.909	0.636	0.327	2e-44
296086552	241	unnamed protein product [Vitis vinifera]	0.545	0.925	0.472	1e-43
297840529	593	cysteine-type peptidase [Arabidopsis lyr	0.907	0.625	0.322	3e-42
307135980	445	sentrin/sumo-specific protease [Cucumis	0.775	0.712	0.354	1e-36
297843874	569	Ulp1 protease family protein [Arabidopsi	0.889	0.639	0.303	5e-36
42571423	570	ubiquitin-like-specific protease 1C [Ara	0.877	0.629	0.305	1e-34
22329476	571	ubiquitin-like-specific protease 1C [Ara	0.880	0.630	0.303	2e-34

>gi|356565950|ref|XP_003551198.1| PREDICTED: ubiquitin-like-specific protease 1D-like [Glycine max]

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 161/376 (42%), Positives = 216/376 (57%), Gaps = 27/376 (7%)

Query: 47  VPMSDDPGSGEELD-RQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECE 105
           VP S    S ++ D   IPD +L   I   K T       LPDKG K+ AT+ R ++E  
Sbjct: 36  VPASAVMSSADQDDLSAIPDHKLRESIQSKKRTLDVTGKNLPDKGVKLRATIDRYQQELT 95

Query: 106 RRRLAGAVPVCLDID--------GC-DKLTQSPSSDCFTQRTPSPQIQSKSSFTSVFREK 156
           RR     +    D D         C D +T+  S+D   +   S Q QS+S+F S F  K
Sbjct: 96  RREQQKRLRQEDDKDRKPQPGQASCTDAVTEGVSND-LREENLSSQAQSQSTFASCFVNK 154

Query: 157 MEENRDCREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKW--PFHKGDKSF 214
           ME+N +C  ++AF KE+S+  H   +K++ +G+  +R R    S   ++  P     +  
Sbjct: 155 MEDNTNCTASDAFRKEISLFKHRGNQKIQDNGEPRRRKRHRSSSRKLQFQCPSKLSKRDT 214

Query: 215 NSNGSQKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDEDESPV 274
            S+G +  RA+       +G N   C PK K++F+ +     R RK   +VL  +D+   
Sbjct: 215 FSDG-KTCRATSPFSLWNNGRNLPRCYPKVKDAFQAIQLDGSRPRKP--IVLDIDDDDDD 271

Query: 275 EDASEESEGSLHI-ETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLT 333
           ++A        HI E TE  ++F E + +AKIY+PSR DPE VEICYTD N LAP  YLT
Sbjct: 272 DEA--------HIVEKTE--NKFPEYLKEAKIYFPSRDDPECVEICYTDTNCLAPEGYLT 321

Query: 334 SPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKG 393
           S IMNFYI+YLQ QA  TNR++ D HFFNTYFY KLKEAVS+K  D++  F KFRRWWKG
Sbjct: 322 STIMNFYIQYLQQQALLTNRSLSDYHFFNTYFYKKLKEAVSYKQSDREMIFAKFRRWWKG 381

Query: 394 VNIFQKSYVLIPIHEE 409
           VNIFQK+YVLIPIHE+
Sbjct: 382 VNIFQKAYVLIPIHED 397

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524061|ref|XP_003530651.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin-like-specific protease 1D-like [Glycine max]

 Score =  234 bits (598), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 169/429 (39%), Positives = 231/429 (53%), Gaps = 44/429 (10%)

Query: 1   MEEQAENRNKRK--LNIDWEEVL----PGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPG 54
           MEEQ   + K K  L IDW        P R+ D+             PA  S    D   
Sbjct: 1   MEEQQRQQQKPKSPLPIDWSRQFQSDSPPRDYDI------------LPASSSADQDDLSA 48

Query: 55  SGEELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVP 114
                   IPD +L   I   K T       LPDKG K+ AT+ R ++E   R     + 
Sbjct: 49  --------IPDHKLRESIQSKKRTLDVTGKNLPDKGTKLRATIDRYQQELTHREQQKRLR 100

Query: 115 VCLDIDGCDKLTQSPSSDCFTQRTPS--------PQIQSKSSFTSVFREKMEENRDCREA 166
              D D   +  Q+ S+D  T+   +         Q QS+S+FTS F ++ME+N +C  +
Sbjct: 101 QEDDKDRKPQPGQASSTDAVTEGVSNDLREENLLSQAQSQSTFTSCFVKQMEDNTNCTAS 160

Query: 167 NAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKW--PFHKGDKSFNSNGSQKDRA 224
           +AF KE+S+  H D +K++  G+  +R R    S   ++  P     ++  S+G +  RA
Sbjct: 161 DAFRKEMSLFKHSDYQKIQDKGEPRRRKRHRSSSRQLQFQCPSKLSKRNTFSDG-KTCRA 219

Query: 225 SLTCPSHQSGENSSSCLPK---KKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEES 281
           + +     +G N   C PK   +K++F+ +     R RK   +VL  +D+   ++  E  
Sbjct: 220 TSSFGLRNNGRNLPRCYPKVHGRKDAFQAIQLDGSRSRKGLPIVLDVDDDDGGDNNDEYD 279

Query: 282 EGSLHI-ETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFY 340
           +   HI E TE  ++F E + +AKIY+PSR DPE VEIC+TD N LAP  YLTS IMNFY
Sbjct: 280 DDEAHIVEKTE--NKFPEYLKEAKIYFPSRDDPECVEICFTDTNCLAPEGYLTSTIMNFY 337

Query: 341 IRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKS 400
           I+YLQ QA  TNR++   HFFNTYFY KLKEAVS+K  D +  F KFRRWWKGVNIFQK+
Sbjct: 338 IQYLQQQALLTNRSLSAYHFFNTYFYKKLKEAVSYKQSDXE-IFAKFRRWWKGVNIFQKA 396

Query: 401 YVLIPIHEE 409
           YVLIPIHE+
Sbjct: 397 YVLIPIHED 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568770|ref|XP_002525356.1| sentrin/sumo-specific protease, putative [Ricinus communis] gi|223535319|gb|EEF36994.1| sentrin/sumo-specific protease, putative [Ricinus communis]

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 107/120 (89%)

Query: 290 TEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQAS 349
            +Q +E AECM DAKIYYPSR D ESVEICYTDIN LAP ++LTSPIMNFYIRYL+LQ S
Sbjct: 1   MDQENELAECMKDAKIYYPSRDDRESVEICYTDINSLAPNSFLTSPIMNFYIRYLRLQTS 60

Query: 350 PTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409
           PTN+AI DCHFFNT+FY KLK+AVS+KG DK+SFFIKFRRWWKGVNIFQK+YV IPIH++
Sbjct: 61  PTNKAISDCHFFNTFFYKKLKQAVSYKGSDKESFFIKFRRWWKGVNIFQKAYVFIPIHDD 120

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336892|ref|NP_176228.3| ubiquitin-like-specific protease 1D [Arabidopsis thaliana] gi|122202545|sp|Q2PS26.1|ULP1D_ARATH RecName: Full=Ubiquitin-like-specific protease 1D; AltName: Full=Protein OVERLY TOLERANT TO SALT 1 gi|83316254|gb|ABC02400.1| SUMO isopeptidase [Arabidopsis thaliana] gi|332195546|gb|AEE33667.1| ubiquitin-like-specific protease 1D [Arabidopsis thaliana]

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/449 (32%), Positives = 217/449 (48%), Gaps = 77/449 (17%)

Query: 10  KRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELG 69
           K+   IDW   +  + D+VP EL +  +  PTP       SDD     +L   + D++L 
Sbjct: 16  KKDFVIDWSSAM-DKEDEVP-ELEIVNTTKPTPPPPPTFFSDDQTDSPKL---LTDRDLD 70

Query: 70  VRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGA----------------- 112
            ++ R K   + +   LPDKG+KI   +  LE+E +RR L G+                 
Sbjct: 71  EQLERKKAILT-LGPGLPDKGEKIRLKIADLEEEKQRRVLEGSKMEVDRSSKVVSSTSSG 129

Query: 113 ---VPVCLDIDGCDKLTQSPSSDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAF 169
              +P    +        + S D   Q     +  S+S+F++VF +      D +   AF
Sbjct: 130 SDVLPQGNAVSKDTSRGNADSKDTSRQGNADSKEVSRSTFSAVFSKP---KTDSQSKKAF 186

Query: 170 DKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKW--------------PFHKGDKSFN 215
            KEL  L  C+RRK ++       GR+ V   S  W               F  G K   
Sbjct: 187 GKELEDLG-CERRKHKA-------GRKPVTRLSNGWRLLPDVGKAEHSAKQFDSGLKESK 238

Query: 216 SNGSQKDRASLTCPSHQSG---------------ENSSSCLPKKKESFEVLPSKNPRLRK 260
            N   K+      P   S                 ++S     ++ S+E  PS++ R RK
Sbjct: 239 GNKKSKEPYGKKRPMESSTYSLIDDDDDDDDDDDNDTSGHETPREWSWEKSPSQSSRRRK 298

Query: 261 EQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICY 320
           +    +++ DE       EE++ S      EQA E  E +    I YP+R DP  V++C 
Sbjct: 299 KSEDTVINVDE-------EEAQPST---VAEQAAELPEGL-QEDICYPTRDDPHFVQVCL 347

Query: 321 TDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDK 380
            D+  LAP  YLTSP+MNFY+R+LQ Q S +N+   DCHFFNTYFY KL +AV++KG DK
Sbjct: 348 KDLECLAPREYLTSPVMNFYMRFLQQQISSSNQISADCHFFNTYFYKKLSDAVTYKGNDK 407

Query: 381 DSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409
           D+FF++FRRWWKG+++F+K+Y+ IPIHE+
Sbjct: 408 DAFFVRFRRWWKGIDLFRKAYIFIPIHED 436

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086552|emb|CBI32141.3| unnamed protein product [Vitis vinifera]

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/252 (47%), Positives = 145/252 (57%), Gaps = 29/252 (11%)

Query: 105 ERRRLAGAVPVCLDIDGCDKLTQS------PSSDCFTQRTPSPQIQSKSSFTSVFREKME 158
           ERR+L     V  D D C+K TQS       +S+   Q TPS Q   +SSF S     M+
Sbjct: 5   ERRKLCR---VEKDADICEKPTQSHNSSFCGASEGSRQVTPSSQAHPQSSFASHLCRMMD 61

Query: 159 ENR-DCREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKG------- 210
           EN  DCR  +AFDKEL  L  CDRRKM+ +G  S RGRQ  R S R+             
Sbjct: 62  ENEADCRTVDAFDKELLQLRRCDRRKMKMNGQHSHRGRQRTRQSLREASIQSSSSISLDR 121

Query: 211 DKSFNSNGSQKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDED 270
           DK+  SNG QK RA+ TC      EN   C PKK+ + +VLPS + R RK Q +VLLDE+
Sbjct: 122 DKNICSNGDQKGRAASTCSLRHLSENLPVCSPKKRSASQVLPSNDSRQRKGQTVVLLDEE 181

Query: 271 ESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAA 330
           E  +            IET +QA +  E M + KIYYPSR DPESVEI ++DI+ LAP A
Sbjct: 182 EPQL------------IETNQQATKITERMKETKIYYPSREDPESVEILFSDIDCLAPQA 229

Query: 331 YLTSPIMNFYIR 342
           YLTSPIMNFYI+
Sbjct: 230 YLTSPIMNFYIQ 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840529|ref|XP_002888146.1| cysteine-type peptidase [Arabidopsis lyrata subsp. lyrata] gi|297333987|gb|EFH64405.1| cysteine-type peptidase [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 148/459 (32%), Positives = 218/459 (47%), Gaps = 88/459 (19%)

Query: 10  KRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQI--PDQE 67
           K+   IDW   +  + D+VP EL +  +  P P Q    +SDD     + D QI   D+ 
Sbjct: 16  KKDFVIDWSSAM-DKEDEVP-ELEIVNTTKPPPPQTPTFLSDD-----QTDSQISLTDRA 68

Query: 68  LGVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRL------------------ 109
           L  ++ R K     +   LPDKG++I   +  LE+E +RR L                  
Sbjct: 69  LDEQLERSKTNLVTLGPGLPDKGERIRLRIVYLEEEKQRRVLDRSKMEVDRSSKVVSSTS 128

Query: 110 -----------AGAVPV---CLDIDGCDKLTQSPSSDCFTQRTPSPQIQSKSSFTSVFRE 155
                      A   P      D     K   + S D   Q     +  S+S+F++ F +
Sbjct: 129 SGSDVLIQGKAASKDPSRQGKTDSKDTSKQGNAASKDISKQGNTDSKEVSRSTFSAFFSK 188

Query: 156 KMEENRDCREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPF-------- 207
                 D +   AF KEL  L  C+ +K ++D       R+ V   S  W          
Sbjct: 189 P---KTDTQSKKAFGKELEDLG-CESKKHKAD-------RKPVTRLSSGWRLLSDIGNAE 237

Query: 208 ---HKGDKSF-NSNGSQKDRASLTCPSHQSGENSSSCLPK-------------KKESFEV 250
               + D  F  SNG+QK + S      +     S                  ++ S++ 
Sbjct: 238 HSEKQLDSGFKGSNGNQKSKESYGKKKRKESSIYSLLDDDDDDDNDPIGHETPREWSWQE 297

Query: 251 LPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSR 310
            PS++ + RK+   ++++ DE       EE + S      EQA E  E +++  I YPSR
Sbjct: 298 SPSESSKRRKKSEDIVINVDE-------EEPQPST---VAEQAVELPEGLLE-DICYPSR 346

Query: 311 VDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLK 370
            DP  V++C  D+  LAP  +LTSP+MNFYIR+LQ Q S +N+   DCHFFNTYFY KL 
Sbjct: 347 DDPHLVQVCLKDLECLAPREFLTSPVMNFYIRFLQQQISSSNQISADCHFFNTYFYKKLS 406

Query: 371 EAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409
           +AV++KG DKD+FF+KFRRWWKG+++F+K+Y+ IPIHE+
Sbjct: 407 DAVTYKGNDKDAFFVKFRRWWKGIDLFRKAYIFIPIHED 445

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135980|gb|ADN33839.1| sentrin/sumo-specific protease [Cucumis melo subsp. melo]

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/353 (35%), Positives = 188/353 (53%), Gaps = 36/353 (10%)

Query: 13  LNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRI 72
           L IDW +V   ++DD   +L++      T     +    +  S EEL  ++ D EL  +I
Sbjct: 13  LKIDWGKVWARKDDDPIPDLLI------TTTTSKMDSDWEHSSREEL-LKLSDGELEDKI 65

Query: 73  ARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQ-SPSS 131
            RM +      + LPDKG+K+   +   E+E E R+L     +  +  GC+ L+Q + SS
Sbjct: 66  RRMTNLLKTSCYRLPDKGEKLRRCIELAEEERESRKLRR---IEKEATGCENLSQPTTSS 122

Query: 132 DCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAFDKELSILAHCDRRKMRSDGDLS 191
               +R  S    S  +FT+ F +K+E+  + R  +AF +ELSIL HCD R+ RS+G LS
Sbjct: 123 IVARERIASSSADSVCAFTARFNQKLEQKTE-RNNSAFGEELSILGHCDNRRQRSNGKLS 181

Query: 192 QRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQS-------GENSSSCLPKK 244
            + +Q  ++SSR+ PF K   S +++  QK  +     S +S        E    C  KK
Sbjct: 182 PKVKQKGQTSSRQQPF-KCVNSLSTDVHQKVSSVAAQNSKRSDHIDFHVSEWQPECFGKK 240

Query: 245 KESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAK 304
            +S EV  S  P  +K Q +V++DE+E+            L ++  +  D+   CM +AK
Sbjct: 241 DDS-EVQHSDTPMPQKRQTIVVVDEEEA------------LAMKIPKHDDK---CMKEAK 284

Query: 305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRD 357
           IYYPSR DPESVEIC+ DI  L P  YLTS IMNFYIR+++ +    +R + D
Sbjct: 285 IYYPSRDDPESVEICFEDIKCLDPEGYLTSTIMNFYIRFVKEEWCYLDREVAD 337

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843874|ref|XP_002889818.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297335660|gb|EFH66077.1| Ulp1 protease family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 134/442 (30%), Positives = 198/442 (44%), Gaps = 78/442 (17%)

Query: 12  KLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEE---LDRQIPDQEL 68
           K NIDW++ L    ++VP   I+        A   +P  +   SG+E     R + D EL
Sbjct: 17  KFNIDWDDALG--EEEVPELEII--------ATDKIPQREPTLSGDEPAVCVRSLRDNEL 66

Query: 69  GVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQS 128
              + R +   +++   LPDKG+KI   +  LE E +RR       +    +GC  L + 
Sbjct: 67  DDHLKRQRSLLTRLGDKLPDKGEKIRNRIGDLEYEKQRRMFQQRTKMQDADNGCQILEKP 126

Query: 129 PSSDCFTQRTPSPQIQSKSSFT-------SVFREKMEENR--DCREANAFDKELSILAHC 179
            SSD F Q + + +  S    T       S F     +N     +    F+ +L  L   
Sbjct: 127 KSSDVFMQASTASKDTSGQGNTGSKDVSRSTFAAHFSDNHKAGAQSVKLFNDKLQDLGRG 186

Query: 180 DRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQSGENSSS 239
              K +++ D         RS  R       +K+F S    KD      P+   G+    
Sbjct: 187 SW-KSKANSDSIIEKSNGWRSLPRLSKCKVSEKNFYSEA--KDPKGDRKPNEAYGKGK-- 241

Query: 240 CLPKKKESFEVLPSK---NP----------------------RLRKEQNLVLLDEDE--S 272
             PK+   + ++      NP                      R + +  ++ LDEDE  S
Sbjct: 242 --PKESSPYLLVDDDDDDNPVISYETPREWSSKASPSQSSSCRKKSDDKVINLDEDEPQS 299

Query: 273 P--VEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPES---VEICYTDINHLA 327
           P  V++A E  EG                 +   IYYPS    +    V++   D+  L+
Sbjct: 300 PMVVDEACELPEG-----------------LPEDIYYPSSDQSDGRDLVQVSLKDLKCLS 342

Query: 328 PAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKF 387
           P  YLTSP++NFYIR+LQ      +    +CHFFNT+FY KL EAVS+KG DKD++F+KF
Sbjct: 343 PGEYLTSPVINFYIRFLQHHVFSADETAANCHFFNTFFYKKLIEAVSYKGNDKDAYFVKF 402

Query: 388 RRWWKGVNIFQKSYVLIPIHEE 409
           RRWWKG ++F KSY+ IPIHE+
Sbjct: 403 RRWWKGFDLFCKSYIFIPIHED 424

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571423|ref|NP_973802.1| ubiquitin-like-specific protease 1C [Arabidopsis thaliana] gi|332190475|gb|AEE28596.1| ubiquitin-like-specific protease 1C [Arabidopsis thaliana]

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 203/451 (45%), Gaps = 92/451 (20%)

Query: 10  KRKLNIDWEEVLPGRNDDVP-AELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQEL 68
           K  LNIDW++ L   +++VP  E+I     PP     S     +P       R + D EL
Sbjct: 14  KTMLNIDWDDALG--DEEVPELEIIATDKIPPREPTLS---GYEPAVSV---RSLRDNEL 65

Query: 69  GVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQS 128
              + R +   +++   L DKG+KI   +  LE E +RR       +  D +GC  L + 
Sbjct: 66  DDHLKRQRSLLTRLGDKLADKGEKIRNRIGELEYEKQRRMFQQRTKMDAD-NGCQILEKP 124

Query: 129 PSSDCFT-----------QRTPSPQIQSKSSFTSVFREKM-------------------- 157
            SSD F            Q T   +  S+S+F + F + +                    
Sbjct: 125 KSSDVFMRASTASKDTSGQGTSGSKDVSRSTFAAHFSDNLKMGPQPVKLVNDKLQDLGRG 184

Query: 158 ----EENRD-CREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDK 212
               + NRD   E N   + L  L+ C            +   +N  S S+     KGD+
Sbjct: 185 SWISKANRDSIIEKNNVWRSLPRLSKC------------KVSLKNFYSESKD---PKGDR 229

Query: 213 SFN-SNGSQKDRAS----LTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQN--LV 265
             N + G  K   S    L        +        +  S +  P ++   RK+ +  ++
Sbjct: 230 RPNEAYGKGKPNESSPYLLVDDDDGDDDKVIGYETPRHWSLKASPLQSSSCRKKSDDKVI 289

Query: 266 LLDEDE--SP--VEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPES---VEI 318
            LDEDE  SP  VE+A E  EG                 +   IYYPS    +    V++
Sbjct: 290 NLDEDEPLSPMVVEEACELPEG-----------------LPEDIYYPSSDQSDGRDLVQV 332

Query: 319 CYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGG 378
              D+  L+P  YLTSP++NFYIRY+Q      ++   +CHFFNT+FY KL EAVS+KG 
Sbjct: 333 SLKDLKCLSPGEYLTSPVINFYIRYVQHHVFSADKTAANCHFFNTFFYKKLTEAVSYKGN 392

Query: 379 DKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409
           D+D++F+KFRRWWKG ++F KSY+ IPIHE+
Sbjct: 393 DRDAYFVKFRRWWKGFDLFCKSYIFIPIHED 423

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329476|ref|NP_172527.2| ubiquitin-like-specific protease 1C [Arabidopsis thaliana] gi|75158722|sp|Q8RWN0.1|ULP1C_ARATH RecName: Full=Ubiquitin-like-specific protease 1C; AltName: Full=Protein OVERLY TOLERANT TO SALT 2 gi|20260164|gb|AAM12980.1| similar to protein-tyrosine phosphatase 2 [Arabidopsis thaliana] gi|22136240|gb|AAM91198.1| similar to protein-tyrosine phosphatase 2 [Arabidopsis thaliana] gi|332190474|gb|AEE28595.1| ubiquitin-like-specific protease 1C [Arabidopsis thaliana]

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 137/451 (30%), Positives = 202/451 (44%), Gaps = 91/451 (20%)

Query: 10  KRKLNIDWEEVLPGRNDDVP-AELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQEL 68
           K  LNIDW++ L   +++VP  E+I     PP     S     +P       R + D EL
Sbjct: 14  KTMLNIDWDDALG--DEEVPELEIIATDKIPPREPTLS---GYEPAVSV---RSLRDNEL 65

Query: 69  GVRIARMKDTYSKVRHCLPDKGKKILATVTRLEKECERRRLAGAVPVCLDIDGCDKLTQS 128
              + R +   +++   L DKG+KI   +  LE E +RR       +    +GC  L + 
Sbjct: 66  DDHLKRQRSLLTRLGDKLADKGEKIRNRIGELEYEKQRRMFQQRTKMQDADNGCQILEKP 125

Query: 129 PSSDCFT-----------QRTPSPQIQSKSSFTSVFREKM-------------------- 157
            SSD F            Q T   +  S+S+F + F + +                    
Sbjct: 126 KSSDVFMRASTASKDTSGQGTSGSKDVSRSTFAAHFSDNLKMGPQPVKLVNDKLQDLGRG 185

Query: 158 ----EENRD-CREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPFHKGDK 212
               + NRD   E N   + L  L+ C            +   +N  S S+     KGD+
Sbjct: 186 SWISKANRDSIIEKNNVWRSLPRLSKC------------KVSLKNFYSESKD---PKGDR 230

Query: 213 SFN-SNGSQKDRAS----LTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQN--LV 265
             N + G  K   S    L        +        +  S +  P ++   RK+ +  ++
Sbjct: 231 RPNEAYGKGKPNESSPYLLVDDDDGDDDKVIGYETPRHWSLKASPLQSSSCRKKSDDKVI 290

Query: 266 LLDEDE--SP--VEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPES---VEI 318
            LDEDE  SP  VE+A E  EG                 +   IYYPS    +    V++
Sbjct: 291 NLDEDEPLSPMVVEEACELPEG-----------------LPEDIYYPSSDQSDGRDLVQV 333

Query: 319 CYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGG 378
              D+  L+P  YLTSP++NFYIRY+Q      ++   +CHFFNT+FY KL EAVS+KG 
Sbjct: 334 SLKDLKCLSPGEYLTSPVINFYIRYVQHHVFSADKTAANCHFFNTFFYKKLTEAVSYKGN 393

Query: 379 DKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409
           D+D++F+KFRRWWKG ++F KSY+ IPIHE+
Sbjct: 394 DRDAYFVKFRRWWKGFDLFCKSYIFIPIHED 424

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2195598	584	ULP1D "UB-like protease 1D" [A	0.647	0.453	0.374	2.8e-41
TAIR|locus:2194574	571	OTS2 "OVERLY TOLERANT TO SALT	0.356	0.255	0.432	9.1e-41
POMBASE|SPAC17A5.07c	638	ulp2 "SUMO deconjugating cyste	0.400	0.257	0.288	1.5e-08
RGD|1305510	1037	Senp7 "SUMO1/sentrin specific	0.315	0.124	0.241	8.1e-08
ZFIN|ZDB-GENE-070912-345	991	si:dkey-100n23.3 "si:dkey-100n	0.251	0.103	0.261	1.3e-07
UNIPROTKB|Q9BQF6	1050	SENP7 "Sentrin-specific protea	0.315	0.122	0.241	4.3e-07
FB|FBgn0030420	681	CG12717 [Drosophila melanogast	0.442	0.265	0.247	5.9e-07
UNIPROTKB|J3QT09	985	SENP7 "Sentrin-specific protea	0.315	0.130	0.241	1.2e-06
DICTYBASE|DDB_G0292290	769	DDB_G0292290 "Sentrin-specific	0.205	0.109	0.319	2.8e-06
RGD|1559489	413	RGD1559489 "similar to sentrin	0.198	0.196	0.344	9.4e-06

TAIR|locus:2195598 ULP1D "UB-like protease 1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 113/302 (37%), Positives = 163/302 (53%)

Query:   130 SSDCFTQRTPSPQIQSKSSFTSVFREKMEENRDCREANAFDKELSILAHCDRRKMRSDGD 189
             S D   Q     +  S+S+F++VF +      D +   AF KEL  L  C+RRK ++   
Sbjct:   150 SKDTSRQGNADSKEVSRSTFSAVFSKP---KTDSQSKKAFGKELEDLG-CERRKHKAGRK 205

Query:   190 ----LSQRGR--QNV-RSSSRKWPFHKGDKSFNSNGSQKDRASLTCPSHQS--------- 233
                 LS   R   +V ++      F  G K    N   K+      P   S         
Sbjct:   206 PVTRLSNGWRLLPDVGKAEHSAKQFDSGLKESKGNKKSKEPYGKKRPMESSTYSLIDDDD 265

Query:   234 -----GENSSSCLPKKKE-SFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHI 287
                   +N +S     +E S+E  PS++ R RK+    +++ DE       EE++ S   
Sbjct:   266 DDDDDDDNDTSGHETPREWSWEKSPSQSSRRRKKSEDTVINVDE-------EEAQPST-- 316

Query:   288 ETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQ 347
                EQA E  E + +  I YP+R DP  V++C  D+  LAP  YLTSP+MNFY+R+LQ Q
Sbjct:   317 -VAEQAAELPEGLQE-DICYPTRDDPHFVQVCLKDLECLAPREYLTSPVMNFYMRFLQQQ 374

Query:   348 ASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
              S +N+   DCHFFNTYFY KL +AV++KG DKD+FF++FRRWWKG+++F+K+Y+ IPIH
Sbjct:   375 ISSSNQISADCHFFNTYFYKKLSDAVTYKGNDKDAFFVRFRRWWKGIDLFRKAYIFIPIH 434

Query:   408 EE 409
             E+
Sbjct:   435 ED 436

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0016926 "protein desumoylation" evidence=RCA;IDA

GO:0016929 "SUMO-specific protease activity" evidence=IDA

GO:0009651 "response to salt stress" evidence=IGI

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI;RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2194574 OTS2 "OVERLY TOLERANT TO SALT 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 9.1e-41, Sum P(2) = 9.1e-41
 Identities = 70/162 (43%), Positives = 100/162 (61%)

Query:   251 LPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSR 310
             L S + R + +  ++ LDEDE P+                E+A E  E + +  IYYPS 
Sbjct:   276 LQSSSCRKKSDDKVINLDEDE-PLSPM-----------VVEEACELPEGLPE-DIYYPSS 322

Query:   311 VDPES---VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYS 367
                +    V++   D+  L+P  YLTSP++NFYIRY+Q      ++   +CHFFNT+FY 
Sbjct:   323 DQSDGRDLVQVSLKDLKCLSPGEYLTSPVINFYIRYVQHHVFSADKTAANCHFFNTFFYK 382

Query:   368 KLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409
             KL EAVS+KG D+D++F+KFRRWWKG ++F KSY+ IPIHE+
Sbjct:   383 KLTEAVSYKGNDRDAYFVKFRRWWKGFDLFCKSYIFIPIHED 424

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS

GO:0016926 "protein desumoylation" evidence=RCA;IDA

GO:0016929 "SUMO-specific protease activity" evidence=IDA

GO:0009651 "response to salt stress" evidence=IGI

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI;RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

POMBASE|SPAC17A5.07c ulp2 "SUMO deconjugating cysteine peptidase Ulp2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 161 (61.7 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 51/177 (28%), Positives = 85/177 (48%)

Query:   233 SGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLLDEDESPVEDASEESEGSLHIETTEQ 292
             SG++  S +    +S    P+ N   + EQN        +  + ++  S+GS   + T  
Sbjct:   273 SGDSLLSRIKNSNQSSSERPTANNGAQ-EQNQSSSSAGNTSNDFSTLCSQGS---DKTLL 328

Query:   293 ADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTN 352
             +D  A C     + YP      S+ I  TD+  L    +L   I++FY+RYL  +    N
Sbjct:   329 SD--ASCT--TILVYPFS-GTNSIAITNTDLTRLNEGEFLNDTIVDFYLRYLYCKLQTQN 383

Query:   353 RAI-RDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE 408
              ++  D H FNT+FY++L      K G K       R+W + V++F K Y+++PI+E
Sbjct:   384 PSLANDTHIFNTFFYNRLTS--KDKDG-KRLGHRGVRKWTQKVDLFHKKYIIVPINE 437

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016926 "protein desumoylation" evidence=ISO

GO:0016929 "SUMO-specific protease activity" evidence=ISO

GO:0030261 "chromosome condensation" evidence=ISO

RGD|1305510 Senp7 "SUMO1/sentrin specific peptidase 7" [Rattus norvegicus (taxid:10116)]

 Score = 132 (51.5 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
 Identities = 34/141 (24%), Positives = 64/141 (45%)

Query:   279 EESEGSLHIETTEQADE-FAECM----IDAKIYYPSRVDPESVEICYTDINHLAPAAYLT 333
             ++S G   +  T   DE + E      +   I YP       + +   D+  L    +L 
Sbjct:   705 KQSSGCYSLSITSSPDEEWREVRNTGPVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLN 764

Query:   334 SPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRR---- 389
               I++FY++YL L+ + ++  +   H F+++FY  L    ++   D     +  RR    
Sbjct:   765 DVIIDFYLKYLLLEKA-SDELVERSHIFSSFFYKCLTRKENNLTEDNPDLSVAQRRHRRV 823

Query:   390 --WWKGVNIFQKSYVLIPIHE 408
               W + +NIF K Y+ +P++E
Sbjct:   824 RTWTRHINIFNKDYIFVPVNE 844

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

ZFIN|ZDB-GENE-070912-345 si:dkey-100n23.3 "si:dkey-100n23.3" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 29/111 (26%), Positives = 56/111 (50%)

Query:   305 IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTY 364
             I +P      ++ +   D+  L    +L   I++FY++YL +Q +P     R  H F+++
Sbjct:   666 IQFPPPPSKGALTVTTEDLECLDSGEFLNDVIIDFYLKYLLVQKAPQASVARS-HIFSSF 724

Query:   365 FYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHEE 409
             FY +L     +   D  S   + RR      W + V+IF+K ++ +P+++E
Sbjct:   725 FYKQLTRR-DNANEDSTSTPAQVRRHQRVRTWTRHVDIFEKDFLFVPVNQE 774

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|Q9BQF6 SENP7 "Sentrin-specific protease 7" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query:   279 EESEGSLHIETTEQADE-FAEC----MIDAKIYYPSRVDPESVEICYTDINHLAPAAYLT 333
             ++S G   +  T   DE + E     ++   I YP       + +   D+  L    +L 
Sbjct:   718 KQSSGCYSLSITSNPDEEWREVRHTGLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLN 777

Query:   334 SPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRR---- 389
               I++FY++YL L+ + ++  +   H F+++FY  L    ++   D  +  +  RR    
Sbjct:   778 DVIIDFYLKYLILEKA-SDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRV 836

Query:   390 --WWKGVNIFQKSYVLIPIHE 408
               W + +NIF K Y+ +P++E
Sbjct:   837 RTWTRHINIFNKDYIFVPVNE 857

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=NAS

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

FB|FBgn0030420 CG12717 [Drosophila melanogaster (taxid:7227)]

 Score = 147 (56.8 bits), Expect = 5.9e-07, P = 5.9e-07
 Identities = 48/194 (24%), Positives = 87/194 (44%)

Query:   220 QKDRASLTCPSHQSGENSSSCLPKKKESFEVLPSKNPRLRKEQNLVLL-DEDESPVEDAS 278
             Q + AS++ P+ ++   S + +P   E  E       RLR+ +N +L  D DE  V   S
Sbjct:   292 QSNVASISSPAVKA--TSDAAIPTPAERAE-----RSRLRRNRNWILSRDVDEDAVVLVS 344

Query:   279 EESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMN 338
                E +   +  +     +         YP       + I   D   L+  +YL   I++
Sbjct:   345 SGDEETTAADDGQTERRLSPDENQTLFTYPP-TGTGGLSITIKDFMCLSKGSYLNDIIID 403

Query:   339 FYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRR---WWKGVN 395
             FY+R+L+    P  +  R  H F+T+F+ +L    + +   + +   +  R   W + VN
Sbjct:   404 FYLRWLKNNIIPEEQRDRT-HIFSTFFHKRLTTRTNPRNTKQTAAQKRHERVEKWTRNVN 462

Query:   396 IFQKSYVLIPIHEE 409
             IF K +++IP +E+
Sbjct:   463 IFDKDFIIIPFNEQ 476

GO:0006508 "proteolysis" evidence=IEA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0021952 "central nervous system projection neuron axonogenesis" evidence=IMP

GO:0060997 "dendritic spine morphogenesis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0016929 "SUMO-specific protease activity" evidence=ISS

GO:0016926 "protein desumoylation" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|J3QT09 SENP7 "Sentrin-specific protease 7" [Homo sapiens (taxid:9606)]

 Score = 133 (51.9 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 34/141 (24%), Positives = 66/141 (46%)

Query:   279 EESEGSLHIETTEQADE-FAEC----MIDAKIYYPSRVDPESVEICYTDINHLAPAAYLT 333
             ++S G   +  T   DE + E     ++   I YP       + +   D+  L    +L 
Sbjct:   653 KQSSGCYSLSITSNPDEEWREVRHTGLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLN 712

Query:   334 SPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRR---- 389
               I++FY++YL L+ + ++  +   H F+++FY  L    ++   D  +  +  RR    
Sbjct:   713 DVIIDFYLKYLILEKA-SDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRV 771

Query:   390 --WWKGVNIFQKSYVLIPIHE 408
               W + +NIF K Y+ +P++E
Sbjct:   772 RTWTRHINIFNKDYIFVPVNE 792

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

DICTYBASE|DDB_G0292290 DDB_G0292290 "Sentrin-specific protease 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 145 (56.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 31/97 (31%), Positives = 53/97 (54%)

Query:   317 EICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPT-----NRAIRDCHFFNTYFYSKLKE 371
             E+  +D+  L+P  +L   ++NFY+  L+++ +       N +   CHFFNT+FY KL  
Sbjct:   565 EVRRSDVRLLSPGKWLNDEVINFYMEVLKIRDAEKKKISGNNSFPKCHFFNTFFYPKLCN 624

Query:   372 AVSHKGGDKDSF-FIKFRRWWKGVNIFQKSYVLIPIH 407
                    D  ++ + K RRW   +N+F+   ++IPIH
Sbjct:   625 -------DNHTYNYEKVRRWTARINLFEMDKIIIPIH 654

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|1559489 RGD1559489 "similar to sentrin 15" [Rattus norvegicus (taxid:10116)]

 Score = 133 (51.9 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 32/93 (34%), Positives = 51/93 (54%)

Query:   315 SVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVS 374
             ++ I   D+  L+ +A+L   ++NFY+  L +  + T +     H FNT+FY+KLK    
Sbjct:   218 NMTITRADMRTLSDSAWLNDNVINFYMNLL-VDRNQT-QGYPALHAFNTFFYTKLKS--- 272

Query:   375 HKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
               GG     +   RRW K VN+F K  +L+P+H
Sbjct:   273 --GG-----YRSVRRWTKAVNLFAKELILVPVH 298

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	2e-12
COG5160	578	COG5160, ULP1, Protease, Ulp1 family [Posttranslat	2e-11
PLN03189	490	PLN03189, PLN03189, Protease specific for SMALL UB	5e-04

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 13/91 (14%)

Query: 331 YLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAV----------SHKGGDK 380
           +L   +++FY++ L  +    +      HF N++FYSKL +            S K G K
Sbjct: 2   WLNDTVIDFYLKLLAHRLESEDYKNERVHFLNSFFYSKLTKLFPDFKKCKSKKSFKWGKK 61

Query: 381 DSFFIKFRRWWKGVN---IFQKSYVLIPIHE 408
             F+   RRW + VN   +F    + IPI+ 
Sbjct: 62  KDFYNGVRRWTRKVNKKWLFDVDIIYIPINW 92

This domain contains the catalytic triad Cys-His-Asn. Length = 216

>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 11/98 (11%)

Query: 311 VDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLK 370
            D  S+EI   D   L    +L   I++FY++ L    S         H FNT+FY+KL 
Sbjct: 376 NDRSSIEITNQDFKRLRNGDWLNDTIIDFYMKLLSKI-SKNTSKREQVHLFNTFFYTKLS 434

Query: 371 EAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE 408
               + G          RRW K  +IF K Y+ IPI+ 
Sbjct: 435 RR-GYSG---------VRRWTKKTDIFSKKYIFIPINI 462

Length = 578

>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)

Query: 326 LAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFI 385
           L P A+L   ++N Y+  L+ + +   +    CHFFNT+FY KL   VS K G     + 
Sbjct: 298 LKPGAWLNDEVINLYLELLKEREAREPKKFLKCHFFNTFFYKKL---VSGKSGYD---YK 351

Query: 386 KFRRWWK----GVNIFQKSYVLIPIHEE 409
             RRW      G ++     + +PIH+E
Sbjct: 352 AVRRWTTQKKLGYHLIDCDKIFVPIHQE 379

Length = 490

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	99.93
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	99.9
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	99.89
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	99.62
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.35
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	98.73
PF15328	223	GCOM2: Putative GRINL1B complex locus protein 2	91.51

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.7e-26  Score=239.95  Aligned_cols=111  Identities=28%  Similarity=0.542  Sum_probs=92.5

Q ss_pred             CCcCccchhhhHHHHhhhcc---ceeecCCCCCCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 015324          283 GSLHIETTEQADEFAECMID---AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCH  359 (409)
Q Consensus       283 ~~~~~~~~~~~~e~~~~~~e---~~i~yP~~~~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvh  359 (409)
                      +++.+++.+.+.++...+..   ..+..    ..+++.||..||+||.++.||||+||||||+||.++...++. .++||
T Consensus       286 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~-yp~~h  360 (511)
T KOG0778|consen  286 DSFPPLTEEREAQVQRAFSSRNSTEILV----THFNIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSK-YPKVH  360 (511)
T ss_pred             cccccccHHHHHHHHHHhccCCccccee----hhccccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCC-CceEE
Confidence            44667777666666555531   22221    236699999999999999999999999999999999876554 89999


Q ss_pred             EEcchhHHhHhhhhccCCCCCcccchhhhhhhccCCCCcccEEEEeccC
Q 015324          360 FFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE  408 (409)
Q Consensus       360 iFNSFFY~KL~~~~~~~g~d~~~~y~~VkRWtK~vDLF~kd~I~IPIne  408 (409)
                      +||||||++|...          ||.+|+|||++||||++|+||||||.
T Consensus       361 ~FnTFFy~kL~~~----------gy~~VkRWTk~v~if~~d~i~vPIH~  399 (511)
T KOG0778|consen  361 AFNTFFYTKLVGR----------GYAGVKRWTKKVDIFDKDIIFVPIHL  399 (511)
T ss_pred             EEechhhhhhhhc----------chHHHHhHhhccCccccceeEeeeec
Confidence            9999999999865          79999999999999999999999996

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.6e-24  Score=223.66  Aligned_cols=101  Identities=33%  Similarity=0.657  Sum_probs=87.6

Q ss_pred             HHHhhhccceeecCCCCCCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcchhHHhHhhhhc
Q 015324          295 EFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVS  374 (409)
Q Consensus       295 e~~~~~~e~~i~yP~~~~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFNSFFY~KL~~~~~  374 (409)
                      +...|+. . ..||.- +..+|+||..||.||.++.||||+||||||+||..+... ...+++||+||||||++|.+.  
T Consensus       363 ~~~s~~~-~-~~~~~~-~~~~i~IT~~D~~~L~~~~wLNDtIIdFy~k~ls~~sk~-~s~~~~vh~FnTFFYT~Lsrr--  436 (578)
T COG5160         363 QTPSCLK-S-SCYPFN-DRSSIEITNQDFKRLRNGDWLNDTIIDFYMKLLSKISKN-TSKREQVHLFNTFFYTKLSRR--  436 (578)
T ss_pred             hchhhhc-c-cccccc-CcCcceeehHhhhhhccccchhhHHHHHHHHHHHHhccC-cccccceEEeehhhHHHHHHH--
Confidence            4555664 3 378986 679999999999999999999999999999999666532 336789999999999999875  


Q ss_pred             cCCCCCcccchhhhhhhccCCCCcccEEEEeccCC
Q 015324          375 HKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE  409 (409)
Q Consensus       375 ~~g~d~~~~y~~VkRWtK~vDLF~kd~I~IPIned  409 (409)
                              ||++|+||++++|||+++|||||||..
T Consensus       437 --------Gy~gVrrW~kk~dif~~k~I~iPIni~  463 (578)
T COG5160         437 --------GYSGVRRWTKKTDIFSKKYIFIPINIS  463 (578)
T ss_pred             --------HhHHHHHHHhccCccccceEEEEeccc
Confidence                    799999999999999999999999973

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=99.89  E-value=3.5e-23  Score=214.05  Aligned_cols=117  Identities=23%  Similarity=0.468  Sum_probs=96.1

Q ss_pred             CCcCccchhhhHHHHhhhccc----eeecCCCCCCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcE
Q 015324          283 GSLHIETTEQADEFAECMIDA----KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDC  358 (409)
Q Consensus       283 ~~~~~~~~~~~~e~~~~~~e~----~i~yP~~~~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kv  358 (409)
                      ..+.+++++++.++...|...    .++.+   ++.+|+||+.||.||.|++||||+||||||+||.++....+...+++
T Consensus       254 ~~~~pLT~e~~~~V~~al~~~~~~~vlvs~---~~~~i~IT~~DL~~L~Pg~WLNDeVINfYm~LL~er~~~~p~~~~k~  330 (490)
T PLN03189        254 EPFIPLTREEETEVKRAFSANNRRKVLVTH---ENSNIDITGEILRCLKPGAWLNDEVINLYLELLKEREAREPKKFLKC  330 (490)
T ss_pred             ccCcCCCHHHHHHHHHHhcCCCccceeeec---CCCceEEEHHHhhccCCCCccCHHHHHHHHHHHHHhhhcCcccccce
Confidence            347899999999999988532    22322   35789999999999999999999999999999998764434456799


Q ss_pred             EEEcchhHHhHhhhhccCCCCCcccchhhhhhhcc----CCCCcccEEEEeccC
Q 015324          359 HFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKG----VNIFQKSYVLIPIHE  408 (409)
Q Consensus       359 hiFNSFFY~KL~~~~~~~g~d~~~~y~~VkRWtK~----vDLF~kd~I~IPIne  408 (409)
                      |+||||||++|....      ...+|.+|+|||++    ++||++|+||||||.
T Consensus       331 h~FNTFFytkL~~~~------~~ygY~~VrRWTk~kKigv~Lfs~D~IFIPIh~  378 (490)
T PLN03189        331 HFFNTFFYKKLVSGK------SGYDYKAVRRWTTQKKLGYHLIDCDKIFVPIHQ  378 (490)
T ss_pred             EEEehHHHHHHhhcC------CcCChHHHHHHhhhcccccccccCceEEeeeec
Confidence            999999999998751      12469999999973    689999999999996

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=2.9e-16  Score=168.25  Aligned_cols=364  Identities=15%  Similarity=0.127  Sum_probs=214.1

Q ss_pred             ccCCCcccccccccCCCCCCCCceeeeccCCCCCCCCCCCCCCCCCCCchhhcCCCCchHHHHHHHHhhhhhhccccCCC
Q 015324            8 RNKRKLNIDWEEVLPGRNDDVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRIARMKDTYSKVRHCLP   87 (409)
Q Consensus         8 ~~k~~l~idw~~~~~~~~~~~p~l~iv~~~~~~~~~~~p~~~~~~~~d~~~~~~~~sD~eL~e~i~R~~~~l~~~~~rLp   87 (409)
                      ..++...|.|.-++ .+..-.+.+++|-++++.    .|+.+.|...+..   ..+.|..|.+.-.|..+.+..++.+.+
T Consensus        10 ~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~----~~~~~~~i~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (595)
T KOG0779|consen   10 SEVKSSSIMVESAD-VKELLIRRLEFVVLIKKS----RPNYLNDIIIDLV---LLKDDNTLNDEYTRELSILFILAVKKG   81 (595)
T ss_pred             cccccceeEeccCC-CccceeeccccccccccC----Ccccccccccchh---eeccccCCCccccceeeecccCCcccc
Confidence            46888999999988 545567777777766644    4555677777777   889999999999999999988999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhCCC-----------Cccc---cccccCCCcCCCC------C---ccccccCC-----
Q 015324           88 DKGKKILATVTRLEKECERRRLAGAV-----------PVCL---DIDGCDKLTQSPS------S---DCFTQRTP-----  139 (409)
Q Consensus        88 D~G~Klr~~i~~~~~E~~RR~~~~~~-----------~~~~---d~~~~~~~~qs~s------s---d~~~~~~~-----  139 (409)
                      +.|.+-+..|..++.+..+|+..+.-           .-|.   |.. +++.....+      .   +.|....+     
T Consensus        82 ~~~~~~~~ki~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (595)
T KOG0779|consen   82 LTSLTEPLKIAVLEEQKPHAVVPKKIISVSELRNTNLTEGTFYSDYL-NRIKNIFESVRKFFNQVSYPKFMPNVTSFMPS  160 (595)
T ss_pred             ccccccccccccccccCCccccccccccchhccccCCcccceecccc-cccccccchhcchhhhcccccccchhhcccCC
Confidence            99999999999999999888776540           0011   111 111111110      0   00111000     


Q ss_pred             ------------CcccccccceehhhhhccccccccchhhhhhHhhhhhccCCccccccCCccccccccccccCCCcccc
Q 015324          140 ------------SPQIQSKSSFTSVFREKMEENRDCREANAFDKELSILAHCDRRKMRSDGDLSQRGRQNVRSSSRKWPF  207 (409)
Q Consensus       140 ------------ss~~~s~s~Fts~f~~~~e~~t~~~~~~af~kEls~l~~~~~~~~k~~g~~~~~~k~~~~~ss~~~~~  207 (409)
                                  ..-...+..|-.+|...  ..++-....++..++.......+.+-.......   ..+.+..++  -|
T Consensus       161 ~~~~~q~~~~~~~~i~i~~~~~~~~fi~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~k~~~--~~  233 (595)
T KOG0779|consen  161 PLEKCQLQRVFTWTINITRKLFKKLFIKI--FKNEPFHFKAVKFLLPSALTKSDVCDIADLEVI---FLNSRKDSH--SL  233 (595)
T ss_pred             cccccccccccceeeeeeecchhhhcccC--cccCchhhhhhhcccchhccchhhhhhhccccc---chhcccchh--hh
Confidence                        00012234444455442  122333334444444444322211111111000   000010000  11


Q ss_pred             c------cCCCCCC-----CCCCCcCCCCCCCCCCCCCCCCCc-------------------ccCCccccccccCCCCcc
Q 015324          208 H------KGDKSFN-----SNGSQKDRASLTCPSHQSGENSSS-------------------CLPKKKESFEVLPSKNPR  257 (409)
Q Consensus       208 ~------~~~~~~~-----s~~~~k~~~~~~~~~~~~~~~~~~-------------------~~~k~~~~~~~~~~~~~r  257 (409)
                      .      ...+.+.     +.+..+....+.+  ..++...++                   ...+..|.+...+..+..
T Consensus       234 ~~~~~~~~~~~~~~s~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~dd~~~~~~~~~~~~~~~~~~~~~~~s~~q~~s  311 (595)
T KOG0779|consen  234 VISSINSPNIKTFFSKEVKSRPTPASYFIFSS--FLPGLDPPAELHQNDDIDDIGIILNESPLDKPFEWLLANSPNQSES  311 (595)
T ss_pred             hhcccccccchhhhccccccCCCccccccccc--ccCCCCccccccccchhhhhhhcccccccccchhhhhhcCcccchh
Confidence            1      1111111     1122222222221  111111111                   145666666666655554


Q ss_pred             cccc--CceEeccCCCCCccCCcccccCCcCccchhhhHHHHhhhccceeecCCC-CCCCceEEecchhhccCCCCCcCH
Q 015324          258 LRKE--QNLVLLDEDESPVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSR-VDPESVEICYTDINHLAPAAYLTS  334 (409)
Q Consensus       258 ~r~~--~~vv~ld~d~~~~e~~~~e~~~~~~~~~~~~~~e~~~~~~e~~i~yP~~-~~~~~v~It~sDl~~L~p~~wLND  334 (409)
                      ++..  ..+..+.+.+..            ..+..+.+.++.       ..|++. .. ..+.++..|+.||+++.+|||
T Consensus       312 ~~~~~~~~~~~~~~~~~~------------~~l~~~~~~el~-------~~~~p~~~~-~~~~v~~~Dl~cl~~~e~L~d  371 (595)
T KOG0779|consen  312 RSRDSLDNWFPVKEADKQ------------RTLIVKLAIELL-------EVRVPQICN-QSHQVNNNDLVCLEEGEFLND  371 (595)
T ss_pred             cccccccccccccccccc------------cchHHHhhcccc-------ccCCccccc-cccceeccchhhccccchhhh
Confidence            4443  334333333222            233344333443       333332 22 367999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCcEEEEcchhHHhHhhhhccCCCC--CcccchhhhhhhccCCCCcccEEEEeccCC
Q 015324          335 PIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGD--KDSFFIKFRRWWKGVNIFQKSYVLIPIHEE  409 (409)
Q Consensus       335 ~IINFYL~yL~~~~~~~~~~~~kvhiFNSFFY~KL~~~~~~~g~d--~~~~y~~VkRWtK~vDLF~kd~I~IPIned  409 (409)
                      .||+|||+|+...........+.+|+|+||||.+|.+...+++.+  ....+.++++|++++|+|.++||++|+|+.
T Consensus       372 ~i~dfyl~~i~~~~l~~~~~s~~~h~f~tffyk~l~~~~~~~~~d~~~~~~~~~~~~~~~~~d~~~k~yi~~P~~E~  448 (595)
T KOG0779|consen  372 TIKDFYLEYIRQYLLSQKELSNDRHIFSTFFYKRLCRKLRQKSNDQIQDNRAVRLRTWTRHFDLFNKDYVFVPTHER  448 (595)
T ss_pred             hhhhhhhHHHHHhhhcccccCcchhhhhhHHHhhhhhhhhhhhhhhhhccccCceeeeeeccccccceeEEecCchH
Confidence            999999999999987654467899999999999999998776666  567789999999999999999999999973

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.35  E-value=8.9e-13  Score=120.78  Aligned_cols=79  Identities=33%  Similarity=0.794  Sum_probs=58.0

Q ss_pred             CCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcchhHHhHhhhhccCCCC----------CcccchhhhhhhccC---CC
Q 015324          330 AYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGD----------KDSFFIKFRRWWKGV---NI  396 (409)
Q Consensus       330 ~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFNSFFY~KL~~~~~~~g~d----------~~~~y~~VkRWtK~v---DL  396 (409)
                      +||||.||||||+||..+.........++++|+||||++|......-+.+          ....+.++.+|++..   ++
T Consensus         1 ~wLnd~iId~y~~~l~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   80 (216)
T PF02902_consen    1 EWLNDSIIDFYLEYLRHRLESENKNSKRVHFFSSFFYQKLTECFKQFKKDKERSKFKWNESKDFYNGVQRWFRKKNKKNL   80 (216)
T ss_dssp             --EEHHHHHHHHHHHHHHTCCTHHTSTTEEEE-THHHHHHH----HHHCCH--S-----HHHHCHHHCGGGGTTCCTSTG
T ss_pred             CcCCHHHHHHHHHHHHHhhccCccCCCcEEEECceeeeccccccccccccccccccchhhhhHhhhhhhhhhhccccccc
Confidence            59999999999999986654333457899999999999999432210000          034578999999987   99


Q ss_pred             CcccEEEEeccC
Q 015324          397 FQKSYVLIPIHE  408 (409)
Q Consensus       397 F~kd~I~IPIne  408 (409)
                      +++++||||||.
T Consensus        81 ~~~~~i~iPin~   92 (216)
T PF02902_consen   81 FDKDYIFIPINI   92 (216)
T ss_dssp             GGSSEEEEEEEE
T ss_pred             cccCEEEEEEec
Confidence            999999999996

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=98.73  E-value=1.3e-08  Score=96.86  Aligned_cols=83  Identities=20%  Similarity=0.413  Sum_probs=65.8

Q ss_pred             CceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcchhHHhHhhhhccCCCCCcccchhhhhhhcc
Q 015324          314 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKG  393 (409)
Q Consensus       314 ~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFNSFFY~KL~~~~~~~g~d~~~~y~~VkRWtK~  393 (409)
                      ..|.++.+|+..|.+..||||.||+||.+||......+   .+..|+++    +.++..+++.+     .-+.+......
T Consensus        15 ~dv~Lr~sDVdlL~~p~wlnD~~I~F~~e~l~~~~~~s---~~~~~ll~----P~~t~~l~~~~-----~~~e~~~~~~p   82 (223)
T KOG3246|consen   15 FDVSLRQSDVDLLQPPEWLNDRLIDFYYEYLEHRRSRS---EPDLHLLR----PSLTFFLRHAP-----NPEEIAMVLDP   82 (223)
T ss_pred             eehhhhhhhhhhcCCCchhhhhHHHHHHHHHHHhhccc---CcchhccC----HHHHHHHHhCC-----CcHHHHHhcCh
Confidence            45899999999999999999999999999999987643   24467777    56666554433     22446666778


Q ss_pred             CCCCcccEEEEeccC
Q 015324          394 VNIFQKSYVLIPIHE  408 (409)
Q Consensus       394 vDLF~kd~I~IPIne  408 (409)
                      .|+++|+|||+|||.
T Consensus        83 l~l~~k~~iflpiND   97 (223)
T KOG3246|consen   83 LDLNDKDFIFLPIND   97 (223)
T ss_pred             hhcCCCceEEEEecC
Confidence            899999999999996

>PF15328 GCOM2: Putative GRINL1B complex locus protein 2

Probab=91.51  E-value=0.18  Score=48.78  Aligned_cols=37  Identities=35%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             HHhhhhhh--ccccCCCcchHHHHHHHHHHHHHHHHHhh
Q 015324           73 ARMKDTYS--KVRHCLPDKGKKILATVTRLEKECERRRL  109 (409)
Q Consensus        73 ~R~~~~l~--~~~~rLpD~G~Klr~~i~~~~~E~~RR~~  109 (409)
                      +|+..+|.  ++-.+|||||+||+.++..|..++.+|.-
T Consensus         3 ~rq~klL~nkkfi~kLpDKGkKI~~~~~kL~~ai~~r~e   41 (223)
T PF15328_consen    3 RRQEKLLRNKKFICKLPDKGKKIQDFVEKLKAAIAEREE   41 (223)
T ss_pred             hHHHHHhcchhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence            56666663  47789999999999999999999999833

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	409
3eay_A	323	Crystal Structure Of The Human Senp7 Catalytic Doma		8e-07
2io0_A	232	Crystal Structure Of Human Senp2 In Complex With Pr		1e-06
1tgz_A	226	Structure Of Human Senp2 In Complex With Sumo-1 Len		1e-06
2xph_A	238	Crystal Structure Of Human Senp1 With The Bound Cob		1e-05
2xre_A	230	Detection Of Cobalt In Previously Unassigned Human		2e-05
2iy0_A	226	Senp1 (Mutant) Sumo1 Rangap Length = 226		2e-05
2iyc_A	226	Senp1 Native Structure Length = 226		2e-05
2ckg_A	225	The Structure Of Senp1 Sumo-2 Co-Complex Suggests A		3e-05
2g4d_A	205	Crystal Structure Of Human Senp1 Mutant (C603s) In		4e-05

>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain Length = 323

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 300 MIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCH 359
           ++   I YP       + +   D+  L    +L   I++FY++YL L+ + ++  +   H
Sbjct: 17  LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKA-SDELVERSH 75
Query: 360 FFNTYFYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHE 408
            F+++FY  L    ++   D  +  +  RR      W + +NIF K Y+ +P++E
Sbjct: 76  IFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNE 130

>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2 Length = 232

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 371
           + I   DI  L    +L   ++NFY+  L    + Q  P        H F+T+FY KLK 
Sbjct: 38  LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 91
Query: 372 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
                GG     +   +RW KGVN+F++  +L+PIH
Sbjct: 92  -----GG-----YQAVKRWTKGVNLFEQEIILVPIH 117

>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1 Length = 226

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 371
           + I   DI  L    +L   ++NFY+  L    + Q  P        H F+T+FY KLK 
Sbjct: 32  LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 85
Query: 372 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
                GG     +   +RW KGVN+F++  +L+PIH
Sbjct: 86  -----GG-----YQAVKRWTKGVNLFEQEIILVPIH 111

>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
           + I   DI  L    +L   I+NFY+  L  ++    + +   H FNT+F++KLK A   
Sbjct: 44  LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 99
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
                   +   +RW K V++F    +L+PIH
Sbjct: 100 --------YQAVKRWTKKVDVFSVDILLVPIH 123

>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
           + I   DI  L    +L   I+NFY+  L  ++    + +   H FNT+F++KLK A   
Sbjct: 36  LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 91
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
                   +   +RW K V++F    +L+PIH
Sbjct: 92  --------YQAVKRWTKKVDVFSVDILLVPIH 115

>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
           + I   DI  L    +L   I+NFY+  L  ++    + +   H FNT+F++KLK A   
Sbjct: 32  LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 87
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
                   +   +RW K V++F    +L+PIH
Sbjct: 88  --------YQAVKRWTKKVDVFSVDILLVPIH 111

>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
           + I   DI  L    +L   I+NFY+  L  ++    + +   H FNT+F++KLK A   
Sbjct: 32  LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAGYQ 89
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
                       +RW K V++F    +L+PIH
Sbjct: 90  A----------VKRWTKKVDVFSVDILLVPIH 111

>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
           + I   DI  L    +L   I+NFY+  L  ++    + +   H FNT+F++KLK A   
Sbjct: 32  LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAGYQ 89
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
                       +RW K V++F    +L+PIH
Sbjct: 90  A----------VKRWTKKVDVFSVDILLVPIH 111

>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
           + I   DI  L    +L   I+NFY+    L      + +   H FNT+F++KLK A   
Sbjct: 11  LTITRKDIQTLNHLNWLNDEIINFYMN--MLMERSKEKGLPSVHAFNTFFFTKLKTAG-- 66
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407
                   +   +RW K V++F    +L+PIH
Sbjct: 67  --------YQAVKRWTKKVDVFSVDILLVPIH 90

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	5e-19
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	1e-14
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	3e-12
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	1e-11
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Length = 323

 Score = 86.4 bits (212), Expect = 5e-19
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 11/131 (8%)

Query: 289 TTEQADEFAECM----IDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYL 344
           T+   +E+ E      +   I YP       + +   D+  L    +L   I++FY++YL
Sbjct: 2   TSNPDEEWREVRHTGLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYL 61

Query: 345 QLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSF------FIKFRRWWKGVNIFQ 398
            L+   ++  +   H F+++FY  L    ++   D  +         + R W + +NIF 
Sbjct: 62  ILE-KASDELVERSHIFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFN 120

Query: 399 KSYVLIPIHEE 409
           K Y+ +P++E 
Sbjct: 121 KDYIFVPVNES 131

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 71.7 bits (175), Expect = 1e-14
 Identities = 34/137 (24%), Positives = 53/137 (38%), Gaps = 13/137 (9%)

Query: 273 PVEDASEESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYL 332
            + D   +SE      T E   E      +         +   + I   DI  L    +L
Sbjct: 2   AMADIGSDSEDEFPEITEEMEKEIKNVFRNGNQDEV-LSEAFRLTITRKDIQTLNHLNWL 60

Query: 333 TSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWK 392
              I+NFY+  L  ++          H FNT+F++KLK A           +   +RW K
Sbjct: 61  NDEIINFYMNMLMERSKEKGL--PSVHAFNTFFFTKLKTA----------GYQAVKRWTK 108

Query: 393 GVNIFQKSYVLIPIHEE 409
            V++F    +L+PIH  
Sbjct: 109 KVDVFSVDILLVPIHLG 125

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 64.9 bits (157), Expect = 3e-12
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 311 VDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLK 370
                + I   DI  L    +L   ++NFY+  L  +           H F+T+FY KL 
Sbjct: 27  SSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGY--PALHVFSTFFYPKL- 83

Query: 371 EAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409
                    K   +   +RW KGVN+F++  +L+PIH +
Sbjct: 84  ---------KSGGYQAVKRWTKGVNLFEQEIILVPIHRK 113

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 62.8 bits (152), Expect = 1e-11
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 19/101 (18%)

Query: 311 VDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLK 370
           ++ +++EI   D   LAP  +L   I+ F+++Y++       ++  +   FN++FY+ L 
Sbjct: 28  MNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIE-------KSTPNTVAFNSFFYTNL- 79

Query: 371 EAVSHKGGDKDSFFIKFRRWW--KGVNIFQKSYVLIPIHEE 409
                     +  +   RRW   K   I +   +  PI+  
Sbjct: 80  ---------SERGYQGVRRWMKRKKTQIDKLDKIFTPINLN 111

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 315 SVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVS 374
              +  +D++ L P ++L   I+ F   Y        +       F +      +K    
Sbjct: 10  DSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSD--HVSFISPEVTQFIK---- 63

Query: 375 HKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE 408
               +          + + +++  K  V + I++
Sbjct: 64  -CTSNPAE----IAMFLEPLDLPNKRVVFLAIND 92

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 53/430 (12%), Positives = 110/430 (25%), Gaps = 149/430 (34%)

Query: 57  EELD-RQIPDQELGV-------RIARMKDTYSKVRH---CLPDKGKKILAT--------- 96
           +  D + + D    +        I   KD  S        L  K ++++           
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90

Query: 97  ----VTRLEKECERRRLAGAVPVCLDIDGCDKLTQSPSSDCFTQRTPSPQIQSKSSFTSV 152
               ++ ++ E  +  +       + I+  D+L        F +              +V
Sbjct: 91  YKFLMSPIKTEQRQPSM----MTRMYIEQRDRLYNDNQV--FAKY-------------NV 131

Query: 153 FREKMEENRDCREANAFDKELSILAHCDRRKMRSDGDLSQRG----------RQNVRSSS 202
            R +       R+A         L      ++R   ++   G               S  
Sbjct: 132 SRLQPYLKL--RQA---------L-----LELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 203 RKWPFHKGDKSF--NSNGSQKDRASLT-----C----PSHQSGENSSSCLPKKKESFEVL 251
            +       K F  N          L           P+  S  + SS +  +  S +  
Sbjct: 176 VQCKM--DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233

Query: 252 PSKNPRLRKEQN-LVLLDEDESPVEDASEESEGSLHIE----------TTEQADEFAECM 300
             +  + +  +N L++L      V++A                     TT    +  + +
Sbjct: 234 LRRLLKSKPYENCLLVLLN----VQNAK-------AWNAFNLSCKILLTTRFK-QVTDFL 281

Query: 301 IDAKIYYPSRVD-------PESVEIC--YTDI--NHLAPAAYLTSPI------------M 337
             A   + S           E   +   Y D     L      T+P             +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 338 NFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIF 397
             +  +  +        I           + L+ A              +R+ +  +++F
Sbjct: 342 ATWDNWKHVNCDKLTTIIESS-------LNVLEPAE-------------YRKMFDRLSVF 381

Query: 398 QKSYVLIPIH 407
             S   IP  
Sbjct: 382 PPS-AHIPTI 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.94
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	99.85
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	99.84
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.82
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.75
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.38

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.94  E-value=1.3e-27  Score=237.20  Aligned_cols=105  Identities=26%  Similarity=0.607  Sum_probs=86.6

Q ss_pred             ceeecCCCCCCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcchhHHhHhhhhccCCCC---
Q 015324          303 AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGD---  379 (409)
Q Consensus       303 ~~i~yP~~~~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFNSFFY~KL~~~~~~~g~d---  379 (409)
                      ..|+||+++++++++|+++||.||.+++||||+||||||+||..+... ....+++||||||||++|.........+   
T Consensus        20 ~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~-~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~~   98 (323)
T 3eay_A           20 KLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKAS-DELVERSHIFSSFFYKCLTRKENNLTEDNPN   98 (323)
T ss_dssp             EEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSC-HHHHHTEEECCTHHHHHHSCC--------CC
T ss_pred             eeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhcc-ccccCcEEEEchHHHHHHHhccccccccccc
Confidence            679999998999999999999999999999999999999999755432 2235789999999999998652110000   


Q ss_pred             ---CcccchhhhhhhccCCCCcccEEEEeccC
Q 015324          380 ---KDSFFIKFRRWWKGVNIFQKSYVLIPIHE  408 (409)
Q Consensus       380 ---~~~~y~~VkRWtK~vDLF~kd~I~IPIne  408 (409)
                         ...+|.+|+|||+++|||++||||||||+
T Consensus        99 ~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~  130 (323)
T 3eay_A           99 LSMAQRRHKRVRTWTRHINIFNKDYIFVPVNE  130 (323)
T ss_dssp             SCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEE
T ss_pred             chhHHHHHHHHHHHHhhcccccCCEEEEecCC
Confidence               12469999999999999999999999996

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=99.85  E-value=7.2e-22  Score=185.28  Aligned_cols=108  Identities=30%  Similarity=0.542  Sum_probs=90.3

Q ss_pred             cCccchhhhHHHHhhhccc---eeecCCCCCCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 015324          285 LHIETTEQADEFAECMIDA---KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF  361 (409)
Q Consensus       285 ~~~~~~~~~~e~~~~~~e~---~i~yP~~~~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiF  361 (409)
                      ++++++++..++...|.+.   .++.    ...++.|+.+|+.||.+++||||+|||||++||.++...  ...+++|+|
T Consensus         2 ~~~lt~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~--~~~~~~~~f   75 (226)
T 1th0_A            2 LLELTEDMEKEISNALGHGPQDEILS----SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKK--QGYPALHVF   75 (226)
T ss_dssp             CCCCCHHHHHHHHHHHSSSCTTCEEE----EETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHH--HTCCCEEEC
T ss_pred             CCCCCHHHHHHHHHHhccCCccceee----ccCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhh--ccCCcEEEE
Confidence            4678888888988887421   1111    236799999999999999999999999999999876532  235789999


Q ss_pred             cchhHHhHhhhhccCCCCCcccchhhhhhhccCCCCcccEEEEeccC
Q 015324          362 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE  408 (409)
Q Consensus       362 NSFFY~KL~~~~~~~g~d~~~~y~~VkRWtK~vDLF~kd~I~IPIne  408 (409)
                      |||||++|...          +|.+|+||++++|||++++||||||.
T Consensus        76 ~s~f~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~  112 (226)
T 1th0_A           76 STFFYPKLKSG----------GYQAVKRWTKGVNLFEQEIILVPIHR  112 (226)
T ss_dssp             CTTHHHHHHHH----------TGGGTGGGGTTCCGGGSSEEEEEEEE
T ss_pred             eHHHHHHhhhc----------ccHHHHHHhhcCCcccCCEEEEeEEe
Confidence            99999999874          58999999999999999999999985

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=99.84  E-value=2.1e-21  Score=183.63  Aligned_cols=108  Identities=29%  Similarity=0.520  Sum_probs=91.2

Q ss_pred             CcCccchhhhHHHHhhhccc----eeecCCCCCCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEE
Q 015324          284 SLHIETTEQADEFAECMIDA----KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCH  359 (409)
Q Consensus       284 ~~~~~~~~~~~e~~~~~~e~----~i~yP~~~~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvh  359 (409)
                      ++++++.+...++...|...    .+.     ...++.|+.+|+.||.+++||||+|||||++||.++...  ...+++|
T Consensus        13 ~~~~lt~e~~~~v~~~l~~~~~~~vl~-----~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~--~~~~~~~   85 (238)
T 2xph_A           13 EFPEITEEMEKEIKNVFRNGNQDEVLS-----EAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVH   85 (238)
T ss_dssp             CCCCCCHHHHHHHHHHSSSSCTTCCCE-----EETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTS--TTSCCEE
T ss_pred             CCCCCCHHHHHHHHHHHcCCChhheee-----cCCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhh--cCCCcee
Confidence            37788888888888777421    111     235799999999999999999999999999999987643  2357899


Q ss_pred             EEcchhHHhHhhhhccCCCCCcccchhhhhhhccCCCCcccEEEEeccC
Q 015324          360 FFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE  408 (409)
Q Consensus       360 iFNSFFY~KL~~~~~~~g~d~~~~y~~VkRWtK~vDLF~kd~I~IPIne  408 (409)
                      +||||||++|...          +|.+|+|||+++|||++++||||||.
T Consensus        86 ~f~sff~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~  124 (238)
T 2xph_A           86 AFNTFFFTKLKTA----------GYQAVKRWTKKVDVFSVDILLVPIHL  124 (238)
T ss_dssp             ECCTTTTHHHHTT----------CHHHHTTTTTTCCGGGSSEEEEEEEE
T ss_pred             eeecHHHHHhhhc----------ccHHHHHHhccCCcccCCEEEEcccC
Confidence            9999999999764          58999999999999999999999985

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.82  E-value=1.3e-20  Score=176.50  Aligned_cols=103  Identities=23%  Similarity=0.507  Sum_probs=86.7

Q ss_pred             cCccchhhhHHHHhhhccce--eecCCCCCCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEc
Q 015324          285 LHIETTEQADEFAECMIDAK--IYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFN  362 (409)
Q Consensus       285 ~~~~~~~~~~e~~~~~~e~~--i~yP~~~~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFN  362 (409)
                      .++++.++..++...|....  +..    ..+++.|+.+|+.||.+++||||+|||||++||....       +++|+||
T Consensus         4 ~~~l~~~~~~~v~~~l~~~~~~~l~----~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-------~~~~~f~   72 (221)
T 1euv_A            4 VPELNEKDDDQVQKALASRENTQLM----NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAFN   72 (221)
T ss_dssp             SCCCCHHHHHHHHHHHTCSSCCEEE----EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEECC
T ss_pred             CCCCCHHHHHHHHHHhcCCCCeeee----cCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-------CCeEEEE
Confidence            35677888888877775321  111    3478999999999999999999999999999998752       5799999


Q ss_pred             chhHHhHhhhhccCCCCCcccchhhhhhhc--cCCCCcccEEEEeccC
Q 015324          363 TYFYSKLKEAVSHKGGDKDSFFIKFRRWWK--GVNIFQKSYVLIPIHE  408 (409)
Q Consensus       363 SFFY~KL~~~~~~~g~d~~~~y~~VkRWtK--~vDLF~kd~I~IPIne  408 (409)
                      ||||++|...          +|.+|+||++  +++||++++||||||.
T Consensus        73 s~f~~~l~~~----------~~~~v~rw~~~~~~~~~~~~~i~iPin~  110 (221)
T 1euv_A           73 SFFYTNLSER----------GYQGVRRWMKRKKTQIDKLDKIFTPINL  110 (221)
T ss_dssp             THHHHHHHHH----------TGGGTTTTTGGGTSCGGGCSEEEEEEEE
T ss_pred             cHHHHHhhhh----------ccHHHHHHHHhccCCcccCCEEEEEEEc
Confidence            9999999874          5899999998  7899999999999995

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.75  E-value=6.9e-19  Score=163.17  Aligned_cols=81  Identities=16%  Similarity=0.275  Sum_probs=71.6

Q ss_pred             CceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEc---chhHHhHhhhhccCCCCCcccchhhhhh
Q 015324          314 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFN---TYFYSKLKEAVSHKGGDKDSFFIKFRRW  390 (409)
Q Consensus       314 ~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFN---SFFY~KL~~~~~~~g~d~~~~y~~VkRW  390 (409)
                      .++.|+.+|+.+|.+++||||+||||||+||..+..++  ..+++|+||   ||||..+.            .|.+|+||
T Consensus         9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~~~p~~s~f~~~~~------------~~~~v~~~   74 (212)
T 2bkr_A            9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHD--SSDHVSFISPEVTQFIKCTS------------NPAEIAMF   74 (212)
T ss_dssp             TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGG--GTTTEEEECHHHHHHHHHCC------------CHHHHHHH
T ss_pred             CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccC--CCCcEEEEChHHHHHHHhCC------------CHHHHHHH
Confidence            45999999999999999999999999999999987532  257899999   99995542            26789999


Q ss_pred             hccCCCCcccEEEEeccC
Q 015324          391 WKGVNIFQKSYVLIPIHE  408 (409)
Q Consensus       391 tK~vDLF~kd~I~IPIne  408 (409)
                      ++++|||++++||||||.
T Consensus        75 ~~~~~l~~~~~i~iPIn~   92 (212)
T 2bkr_A           75 LEPLDLPNKRVVFLAIND   92 (212)
T ss_dssp             HGGGTGGGCSEEEEEEEC
T ss_pred             hcccccccCCEEEEEEec
Confidence            999999999999999994

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.38  E-value=2.4e-13  Score=124.46  Aligned_cols=71  Identities=18%  Similarity=0.250  Sum_probs=54.5

Q ss_pred             CCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcchhHHhHhhhhccCCCCCcccchhhhhhhccCCCCcccEEEEecc
Q 015324          328 PAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH  407 (409)
Q Consensus       328 p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFNSFFY~KL~~~~~~~g~d~~~~y~~VkRWtK~vDLF~kd~I~IPIn  407 (409)
                      +++||||+||||||+||.++..... ...++||||++|+..|...       ...+|.++++|+++.++  +++||||||
T Consensus         1 ~~~WLND~iI~fy~~~L~~~~~~~~-~~~~v~f~~p~~~~~l~~~-------~~~~~~~~~~~~~~~~~--~~~i~iPin   70 (186)
T 2oix_A            1 ATSWLLDGHLRAYTDDLARRLRGEP-NAHLLHFADSQVVTMLSSA-------DPDQQARAQRLLAGDDI--PPIVFLPIN   70 (186)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHTTTST-TGGGEEECCHHHHHHTTCS-------SHHHHHHHHHHHHSTTS--CSEEEEEEE
T ss_pred             CCCCcChHHHHHHHHHHHHHhhhcc-CcceEEEECHHHHHHHHhC-------CHHHHHHHHHHcccccc--cCEEEEEEe
Confidence            4789999999999999999975322 2245999998766655332       11358889999998887  999999999


Q ss_pred             C
Q 015324          408 E  408 (409)
Q Consensus       408 e  408 (409)
                      .
T Consensus        71 ~   71 (186)
T 2oix_A           71 Q   71 (186)
T ss_dssp             E
T ss_pred             C
Confidence            5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	409
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	2e-13
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	2e-12
d2bkra1	212	d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN	2e-10
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	8e-10

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 2e-13
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 311 VDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLK 370
                + I   DI  L    +L   ++NFY+  L  +           H F+T+FY KLK
Sbjct: 27  SSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYP--ALHVFSTFFYPKLK 84

Query: 371 EAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE 408
                        +   +RW KGVN+F++  +L+PIH 
Sbjct: 85  SG----------GYQAVKRWTKGVNLFEQEIILVPIHR 112

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 2e-12
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 12/98 (12%)

Query: 311 VDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLK 370
            +   + I   DI  L    +L   I+NFY+  L  ++    + +   H FNT+F++K  
Sbjct: 27  SEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTK-- 82

Query: 371 EAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE 408
                    K + +   +RW K V++F    +L+PIH 
Sbjct: 83  --------LKTAGYQAVKRWTKKVDVFSVDILLVPIHL 112

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 2e-10
 Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 11/102 (10%)

Query: 308 PSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYS 367
           P  +      +  +D++ L P ++L   I+ F   Y        +       F +     
Sbjct: 3   PVVLSYMDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDSSD--HVSFISPEVTQ 60

Query: 368 KLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEE 409
            +K   +           +   + + +++  K  V + I++ 
Sbjct: 61  FIKCTSNPA---------EIAMFLEPLDLPNKRVVFLAINDN 93

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (135), Expect = 8e-10
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 26/130 (20%)

Query: 283 GSLHIETTEQADEFAECMIDAKIYYPSR---VDPESVEICYTDINHLAPAAYLTSPIMNF 339
           GSL  E  E+ D+     +   +        ++ +++EI   D   LAP  +L   I+ F
Sbjct: 1   GSLVPELNEKDDDQ----VQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEF 56

Query: 340 YIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWW--KGVNIF 397
           +++Y++       ++  +   FN++FY+ L E            +   RRW   K   I 
Sbjct: 57  FMKYIE-------KSTPNTVAFNSFFYTNLSE----------RGYQGVRRWMKRKKTQID 99

Query: 398 QKSYVLIPIH 407
           +   +  PI+
Sbjct: 100 KLDKIFTPIN 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.72
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.7
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.7
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.58

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.5e-18  Score=155.66  Aligned_cols=106  Identities=28%  Similarity=0.527  Sum_probs=89.3

Q ss_pred             ccchhhhHHHHhhhccceeecCCCC---CCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcc
Q 015324          287 IETTEQADEFAECMIDAKIYYPSRV---DPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNT  363 (409)
Q Consensus       287 ~~~~~~~~e~~~~~~e~~i~yP~~~---~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFNS  363 (409)
                      ++|.+.++++.+.+....    ...   ..+++.|+++|+.+|.+++||||+|||||++||..+...  ....++|+|||
T Consensus         4 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~Dl~~L~~~~WLnD~iI~~y~~~l~~~~~~--~~~~~~~~~~~   77 (226)
T d1th0a_           4 ELTEDMEKEISNALGHGP----QDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKK--QGYPALHVFST   77 (226)
T ss_dssp             CCCHHHHHHHHHHHSSSC----TTCEEEEETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHH--HTCCCEEECCT
T ss_pred             cCCHHHHHHHHHHhcCCC----ccceeeecCCceeEHHHHHhcCCCcccccHHHHHHHHHHHHhhhh--ccCCceEEecH
Confidence            567778888888876331    110   257899999999999999999999999999999887542  24578999999


Q ss_pred             hhHHhHhhhhccCCCCCcccchhhhhhhccCCCCcccEEEEeccC
Q 015324          364 YFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE  408 (409)
Q Consensus       364 FFY~KL~~~~~~~g~d~~~~y~~VkRWtK~vDLF~kd~I~IPIne  408 (409)
                      |||++|...          +|..+++|+++++++++++||||||.
T Consensus        78 ~f~~~l~~~----------~~~~~~~~~~~~~l~~~~~i~iPin~  112 (226)
T d1th0a_          78 FFYPKLKSG----------GYQAVKRWTKGVNLFEQEIILVPIHR  112 (226)
T ss_dssp             THHHHHHHH----------TGGGTGGGGTTCCGGGSSEEEEEEEE
T ss_pred             HHHHHHhhc----------cHHHHHHHHhccCcccCCEEEEeEEc
Confidence            999999875          58999999999999999999999985

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.8e-17  Score=150.82  Aligned_cols=108  Identities=29%  Similarity=0.518  Sum_probs=89.8

Q ss_pred             cCccchhhhHHHHhhhccceeecCCCC---CCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q 015324          285 LHIETTEQADEFAECMIDAKIYYPSRV---DPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF  361 (409)
Q Consensus       285 ~~~~~~~~~~e~~~~~~e~~i~yP~~~---~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiF  361 (409)
                      +++++.+...++.+.+....    ...   ...++.|+++|+.+|.++.||||.|||||++||..+...  ....++|+|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~it~~Dl~~L~~~~wLnd~iI~~y~~~l~~~~~~--~~~~~~~~~   75 (225)
T d2iy1a1           2 FPEITEEMEKEIKNVFRNGN----QDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAF   75 (225)
T ss_dssp             CCCCCHHHHHHHHHHSSSSC----TTCEEEEETTEEEEHHHHHTTSTTCCCBHHHHHHHHHHHHHHTTS--TTSCCEEEC
T ss_pred             CCCCCHHHHHHHHHHhcCCC----cCceeeecCCceeeHHHHHHhcCCcchhhHHHHHHHHHHHHHhhh--hccCceEEe
Confidence            56778877888877764211    100   246799999999999999999999999999999988653  346799999


Q ss_pred             cchhHHhHhhhhccCCCCCcccchhhhhhhccCCCCcccEEEEeccC
Q 015324          362 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHE  408 (409)
Q Consensus       362 NSFFY~KL~~~~~~~g~d~~~~y~~VkRWtK~vDLF~kd~I~IPIne  408 (409)
                      |||||..+...          +|..+++|+++++++++++||||||.
T Consensus        76 ~t~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~I~iPin~  112 (225)
T d2iy1a1          76 NTFFFTKLKTA----------GYQAVKRWTKKVDVFSVDILLVPIHL  112 (225)
T ss_dssp             CTTHHHHHHHS----------CGGGTGGGGTTCCGGGSSEEEEEEEC
T ss_pred             ccHHHhhhccc----------CHHHHHHHHhccccccCCEEEEEEeC
Confidence            99999998764          58899999999999999999999996

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=8.6e-18  Score=154.49  Aligned_cols=101  Identities=24%  Similarity=0.511  Sum_probs=81.9

Q ss_pred             ccchhhhHHHHhhhccc--eeecCCCCCCCceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcch
Q 015324          287 IETTEQADEFAECMIDA--KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTY  364 (409)
Q Consensus       287 ~~~~~~~~e~~~~~~e~--~i~yP~~~~~~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFNSF  364 (409)
                      .++.+...++...+...  ..+.    ...++.||.+|+.+|.|++||||+|||||++||..+.       +++|+||||
T Consensus         6 ~lt~~~~~~~~~~l~~~~~~~~~----~~~~~~it~~Dl~~L~~~~WLnD~iIn~y~~~l~~~~-------~~~~~~~s~   74 (221)
T d1euva_           6 ELNEKDDDQVQKALASRENTQLM----NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAFNSF   74 (221)
T ss_dssp             CCCHHHHHHHHHHHTCSSCCEEE----EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEECCTH
T ss_pred             CCCHHHHHHHHHHHcCCCCceee----ecCCcEEeHHHHhhcCCCcccCcHHHHHHHHHHHhcC-------CCeEEeccH
Confidence            34556666666665421  1111    2367999999999999999999999999999998763       578999999


Q ss_pred             hHHhHhhhhccCCCCCcccchhhhhhh--ccCCCCcccEEEEeccC
Q 015324          365 FYSKLKEAVSHKGGDKDSFFIKFRRWW--KGVNIFQKSYVLIPIHE  408 (409)
Q Consensus       365 FY~KL~~~~~~~g~d~~~~y~~VkRWt--K~vDLF~kd~I~IPIne  408 (409)
                      ||++|.+.          +|.++++|+  ++++++.+++||||||.
T Consensus        75 f~~~l~~~----------~~~~~~~w~~~~~~~~~~~~~i~iPin~  110 (221)
T d1euva_          75 FYTNLSER----------GYQGVRRWMKRKKTQIDKLDKIFTPINL  110 (221)
T ss_dssp             HHHHHHHH----------TGGGTTTTTGGGTSCGGGCSEEEEEEEE
T ss_pred             HHHhHhhh----------chHHHHHHHHhcccchhhcceeEeeEec
Confidence            99999886          589999999  57899999999999984

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.3e-16  Score=138.55  Aligned_cols=84  Identities=15%  Similarity=0.245  Sum_probs=73.1

Q ss_pred             CceEEecchhhccCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCcEEEEcchhHHhHhhhhccCCCCCcccchhhhhhhcc
Q 015324          314 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKG  393 (409)
Q Consensus       314 ~~v~It~sDl~~L~p~~wLND~IINFYL~yL~~~~~~~~~~~~kvhiFNSFFY~KL~~~~~~~g~d~~~~y~~VkRWtK~  393 (409)
                      ..+.|+.+|+.+|.+++||||+||||||+||..+...  .....+++|+++|+..+...         ..+..+++|+++
T Consensus         9 ~d~~l~~~D~~~L~~~~WLND~iId~y~~~l~~~~~~--~~~~~~~f~~~~~~~~~~~~---------~~~~~~~~~~~~   77 (212)
T d2bkra1           9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFH--DSSDHVSFISPEVTQFIKCT---------SNPAEIAMFLEP   77 (212)
T ss_dssp             TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTG--GGTTTEEEECHHHHHHHHHC---------CCHHHHHHHHGG
T ss_pred             eCeeeeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhhc--cccCcEEEEChHHHHHHhcc---------ccHHHHHHHHhc
Confidence            4478999999999999999999999999999887543  23568999999999888653         258899999999


Q ss_pred             CCCCcccEEEEeccC
Q 015324          394 VNIFQKSYVLIPIHE  408 (409)
Q Consensus       394 vDLF~kd~I~IPIne  408 (409)
                      ++++++++||||||.
T Consensus        78 ~~~~~~~~ifiPIn~   92 (212)
T d2bkra1          78 LDLPNKRVVFLAIND   92 (212)
T ss_dssp             GTGGGCSEEEEEEEC
T ss_pred             cChhhccEEEEeccc
Confidence            999999999999985