Citrus Sinensis ID: 015325

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHFE
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHcccccccccccEEEEcccccEEcHHHHHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHcccEEccccccccHHHHHHHHHHcccEEEEEcccHHHHHHcccccEEEEccccccHHHccccccccccccccccccEEEEEcccccccccccEEEccHHHHHHHHHHcccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHccccEEcccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHccccEEEEcccccHHccccccccccccccccccEEccccccEEEEEccccccccccccccEEEEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEcccccEEcHHHHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHcccEEEEEcHHHHHHHHccccEEEEEccccccHHHHHccccccccccccccccEEEEEEccccccccccEEEcHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHcccEEEcccHHHHHHHHHcccccccccHHHHHHHcccccccHHHHHHHHHHccccEEEccccccccccEEEEcccccccccccccccEccccEEEEEcccccccccccccEEEEEccccHEEcccccccc
Coil and Loop (DISEMBL)
mekktpqlfdtksgfnsatktfhslrppidlppedapisaVDYVSSLratlpwrdddtVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLskndtafvlstnsieiPILYFSLLSLgviispanpvnteseISRQIQLSNPVIAFATSSVVHKLAKLKHrtilidspefdsmtmswnskheldrakVCQSDVAAIMyssgttgrvKGVMLTHRNLTAAVASsfasspkrvspavMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVthaavtppIVVAmskggstdgydlssletvacgaaplgkDTIMAFASKFPKVVLVQAYgltestagvfrtvgpdecrrwgstgrlsagleakivdpetgdslppgkegelsirgptimkgiflphfe
Flexible Loop (DISEMBL)
mekktpqlfdtksgfnsaTKTFHSLRPPIDLPPEDAPISAVDYVSSLRatlpwrdddtVALINsvtglrvsfseftrrTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAvassfasspkrVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLtestagvfrtvgpdecrrwgstgrlsagleakivdpetgdslppgkegelsirgptimKGIFLPHFE
Low Complexity Region (SEG)
MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHFE
Disordered region (IsUnstruct)
*************************************ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA***KRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAG*****************************MKGIF*****
Disordered Region (DISOPRED)
****************SATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK*IFLP***
Disordered Region (DISEMBL)
********FDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV**********VSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHFE
Disordered Region (DISPRO)
*****PQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	409	2.2.26 [Sep-21-2011]
Q84P23	562	4-coumarate--CoA ligase-l	yes	no	0.953	0.693	0.473	1e-99
Q8RU95	598	4-coumarate--CoA ligase-l	yes	no	0.955	0.653	0.414	8e-79
Q7F1X5	542	4-coumarate--CoA ligase-l	yes	no	0.897	0.677	0.432	2e-78
Q84P21	546	4-coumarate--CoA ligase-l	no	no	0.946	0.708	0.387	7e-70
P0C5B6	550	4-coumarate--CoA ligase-l	no	no	0.946	0.703	0.385	3e-68
Q3E6Y4	552	4-coumarate--CoA ligase-l	no	no	0.946	0.701	0.376	9e-68
Q84P25	565	4-coumarate--CoA ligase-l	no	no	0.926	0.670	0.395	8e-67
Q84P26	550	4-coumarate--CoA ligase-l	no	no	0.958	0.712	0.365	2e-64
Q69RG7	558	4-coumarate--CoA ligase-l	no	no	0.943	0.691	0.388	2e-62
Q10S72	552	4-coumarate--CoA ligase-l	no	no	0.951	0.704	0.374	5e-62

>sp|Q84P23|4CLL9_ARATH 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2

 Score =  363 bits (933), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 196/414 (47%), Positives = 270/414 (65%), Gaps = 24/414 (5%)

Query: 7   QLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLR------ATLPWRDDDTVA 60
           +L D  SGF+  T  +HSLRP + LPP D P+SA ++  SL       AT     +    
Sbjct: 9   RLIDRSSGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTY 68

Query: 61  LINSVTGLRVSFSEFTRRTNSLA-SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
           L+NS +G  +++ E  RR  SLA S  +    L+  + AF+LS +S++IP+LY +L+S+G
Sbjct: 69  LVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIG 128

Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDSMTMS 177
           V++SPANP+ +ESE+S Q+++S PVIAFATS  V KL  + L   T+L+DS EF    +S
Sbjct: 129 VVVSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEF----LS 184

Query: 178 WNSKHELD-----RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV 232
           W ++ +       + +V QSD AAI++SSGTTGRVKGV+LTHRNL A+ A S   + +  
Sbjct: 185 WLNRSDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQ-- 242

Query: 233 SPA----VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVT 288
            P     V LF++P FH++G     RA +L ET V++ RF+L+ M KAVE+++VT   V+
Sbjct: 243 DPVNYDRVGLFSLPLFHVFGFMMMIRAISLGETLVLLGRFELEAMFKAVEKYKVTGMPVS 302

Query: 289 PPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348
           PP++VA+ K   T  YDL SL ++ CG APLGKD    F  KFP V +VQ YGLTES+  
Sbjct: 303 PPLIVALVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGP 362

Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
              T GP+E  ++GS GR+S  +EAKIVDP TG+SLPPGK GEL +RGP IMKG
Sbjct: 363 AASTFGPEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKG 416

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) into OPDA-CoA.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q8RU95|4CLL6_ORYSJ 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2

 Score =  294 bits (753), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 172/415 (41%), Positives = 238/415 (57%), Gaps = 24/415 (5%)

Query: 11  TKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLP--WRDDDTVALINSVTGL 68
           ++SGF +AT+TFHSLR    LPPE+ P++   Y  SL ++ P         AL+++ TG+
Sbjct: 40  SRSGFCAATRTFHSLRSVGPLPPEELPLTVAAYAFSLLSSAPPLVVAGRGPALVDAATGI 99

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
            VS+  F  R   LA  L     L   D A V+S + +++ +LYF+L+S+GV++SPANP 
Sbjct: 100 AVSYPAFVARVRFLAGGLWCSLGLRPGDVALVVSPSCLDVAVLYFALMSIGVVVSPANPA 159

Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
           +T  E + Q++LS P IAF    V  +L +   R ++I S  FD +  +  +        
Sbjct: 160 STADEYAHQVRLSRPAIAFVAPEVAARLPRHVSR-VVIGSEVFDRLASASAAGGWAAPPA 218

Query: 189 VC--QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-------------ASSFASSPKRVS 233
           V   Q   AA++YSSGTTGRVK V +THRNL A +             A++ A   K   
Sbjct: 219 VAMKQPSTAALLYSSGTTGRVKAVAITHRNLIAQISAYNAIRETVAREAATDAGKGKPPP 278

Query: 234 ------PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
                  AV LF +P FH+ G     R  +  ETAVVM+RFDL    +AVE +RVT  + 
Sbjct: 279 PSPSPPAAVTLFPLPLFHVMGFGLLTRTISSGETAVVMRRFDLAAAARAVERYRVTKLSA 338

Query: 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
            PP+VVA++K       DLSSL  +  G APLG++    FA+ FP V +VQ+YGLTEST 
Sbjct: 339 APPVVVALTKSDEARRRDLSSLVAIVVGGAPLGREVSQRFATVFPSVQIVQSYGLTESTG 398

Query: 348 GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            V    GP+E   +GS GRL+  ++AKIVD  TG+ L PG+ GEL IRGP +MKG
Sbjct: 399 PVATMAGPEESAAYGSVGRLAPRVQAKIVDTATGEVLGPGRRGELWIRGPVVMKG 453

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q7F1X5|4CLL5_ORYSJ 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1

 Score =  293 bits (749), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 168/388 (43%), Positives = 234/388 (60%), Gaps = 21/388 (5%)

Query: 9   FDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSL--RATLPWRDDDTVALINSVT 66
            D++SGF +AT+ FHS R P DLPPE  P++A  Y  SL   +TLP R     AL+++ T
Sbjct: 15  IDSRSGFCAATRIFHSTRAPGDLPPESLPMTAAAYAFSLLSSSTLPGRP----ALVDAAT 70

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
           G+ +S+  F     SLA  L     L   D A V++ + +E+P+L F+L+S+G ++SPAN
Sbjct: 71  GIAISYPSFLAAVRSLAGGLWCSLGLRPGDVALVVAPSRLEVPVLDFALMSIGAVVSPAN 130

Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDR 186
           PV+T  E + Q+ LS PV+AFA   V  KL +   R ++I S E+  +  S   +     
Sbjct: 131 PVSTPEEYAHQVALSRPVVAFAAPEVAAKLPE-HVRCVVIGSDEYGRLAASDGRRAAAPA 189

Query: 187 AKVC-QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS------------ 233
           A    QSD AA++YSSGTTGRVK V +THRNL A + S  A + ++V+            
Sbjct: 190 AVAVKQSDTAAVLYSSGTTGRVKAVAITHRNLIA-LMSLHADNREKVAREAAEAGEEPPP 248

Query: 234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
           PAV L  +P FH++G     R+ ++ ET+V+M+RFD    L+A+E +RVT     PP++V
Sbjct: 249 PAVTLLPIPLFHVFGFMMVLRSVSMGETSVLMERFDFIAALRAIERYRVTLLPAAPPVLV 308

Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353
           AM K       DLSSL  +  G APLG++    FAS FP V LVQ YGLTES+  V  TV
Sbjct: 309 AMVKYEEARRRDLSSLLVIGIGGAPLGREVAEQFASVFPNVELVQGYGLTESSGAVAATV 368

Query: 354 GPDECRRWGSTGRLSAGLEAKIVDPETG 381
           GP+E + +GS G+L + L+AKIVDP TG
Sbjct: 369 GPEESKAYGSVGKLGSHLQAKIVDPSTG 396

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P21|4CLL5_ARATH 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana GN=4CLL5 PE=1 SV=2

 Score =  265 bits (676), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 158/408 (38%), Positives = 231/408 (56%), Gaps = 21/408 (5%)

Query: 10  DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
           +++SGF ++  TF+S R PI LPP +  +    ++SS            +A I++ TG  
Sbjct: 5   NSRSGFCNSNSTFYSKRTPIPLPP-NPSLDVTTFISS------QAHRGRIAFIDASTGQN 57

Query: 70  VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
           ++F+E  R   S+A  L  +  + K     +LS NSI  P++  S++SLG II+  NP+N
Sbjct: 58  LTFTELWRAVESVADCLSEIG-IRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLN 116

Query: 130 TESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDSM--------TMSWN 179
           T +EI++QI+ SNPV+AF TS ++ K+  A  K   +L+D    DS+         M   
Sbjct: 117 TSNEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKE 176

Query: 180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF 239
                 + +V Q D A ++YSSGTTG  KGV+ +HRNL A V +              + 
Sbjct: 177 PSGNRVKERVDQDDTATLLYSSGTTGMSKGVISSHRNLIAMVQTIVNRFGSDDGEQRFIC 236

Query: 240 TMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
           T+P FHIYGL  F     A   T +V+ +F++  M+ A+ +++ T   + PPI+VAM  G
Sbjct: 237 TVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNG 296

Query: 299 GST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
                  YDLSS+ TV CG APL K+    FA K+P V ++Q YGLTEST     T   +
Sbjct: 297 ADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTDTVE 356

Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
           E RR+G+ G+LSA +E +IVDP TG  L P + GEL ++GP+IMKG F
Sbjct: 357 ESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYF 404

Contributes to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors. Converts 12-oxo-phytodienoic acid (OPDA) and 3-oxo-2-(2'-pentenyl)-cyclopentane-1-octanoic acid (OPC-8:0) into OPDA-CoA and OPC-8:0-CoA, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P0C5B6|4CLL4_ARATH 4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1

 Score =  259 bits (661), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 159/412 (38%), Positives = 230/412 (55%), Gaps = 25/412 (6%)

Query: 8   LFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG 67
           + D +SGF  +  TF+S R P+ LPP     +    V++  ++ P R     A I++ TG
Sbjct: 9   IVDPRSGFCKSNSTFYSKRQPLSLPP-----NLSRDVTTFISSQPHRG--KTAFIDAATG 61

Query: 68  LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
             ++FS+  R  + +A  L +   + + D   +LS NSI IP++  S++SLG + + AN 
Sbjct: 62  QCLTFSDLWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANT 121

Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMT--------MSWN 179
           +NT  EIS+QI  SNP + F T  +  KL  +    +L D   +  +T        +S  
Sbjct: 122 LNTSGEISKQIADSNPTLVFTTRQLAPKLP-VAISVVLTDDEVYQELTSAIRVVGILSEM 180

Query: 180 SKHELD----RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA 235
            K E      R +V Q D A ++YSSGTTG  KGV+ +HRNLTA VA   + + KR    
Sbjct: 181 VKKEPSGQRVRDRVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDNLKR--DD 238

Query: 236 VMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
           + + T+P FH YGL  F     AL  T V+++RF L  M+ AVE+ R T  A+ PP++VA
Sbjct: 239 IFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVA 298

Query: 295 MSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
           M          YDLSSL+TV CG APL K+    F  K+P V ++Q Y LTES  G   T
Sbjct: 299 MINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGAFT 358

Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
              +E RR+G+ G L++ +EA+IVDP TG  +   + GEL ++GP+I KG F
Sbjct: 359 NSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYF 410

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q3E6Y4|4CLL3_ARATH 4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2

 Score =  257 bits (657), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 156/414 (37%), Positives = 234/414 (56%), Gaps = 27/414 (6%)

Query: 8   LFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG 67
           + D +SGF  +  TF+S R P+ LPP      ++D V++  ++ P R   T A I++ TG
Sbjct: 9   IVDPRSGFCKSNSTFYSKRNPLCLPPN----PSLD-VTTFISSQPQRG--TTAFIDASTG 61

Query: 68  LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
            R++FS+  R  + +A  L +   + + D   +LS NSI IP++  S++SLG +++ AN 
Sbjct: 62  HRLTFSDLWRVVDRVADCLYHEVGIRRGDVVLILSPNSIYIPVVCLSVMSLGAVVTTANT 121

Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFD--------------S 173
           +NT  EIS+QI  SNP + F TS +  KLA      +L D  +                S
Sbjct: 122 LNTSGEISKQIAQSNPTLVFTTSQLAPKLAA-AISVVLTDEEDEKRVELTSGVRVVGILS 180

Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233
             M   +  +  R +V Q D A ++YSSGTTG  KGV+ +HRNLTA VA       KR  
Sbjct: 181 EMMKKETSGQRVRDRVNQDDTAMMLYSSGTTGTSKGVISSHRNLTAYVAKYIDDKWKR-- 238

Query: 234 PAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV 292
             + + T+P FH +GL  F   + A   T V+++RF L  M++AVE+++ T  ++ PP++
Sbjct: 239 DEIFVCTVPMFHSFGLLAFAMGSVASGSTVVILRRFGLDDMMQAVEKYKATILSLAPPVL 298

Query: 293 VAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
           VAM  G       YDL+SL  V CG APL K+ + +F  K+P V + Q Y LTES     
Sbjct: 299 VAMINGADQLKAKYDLTSLRKVRCGGAPLSKEVMDSFLEKYPTVNIFQGYALTESHGSGA 358

Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
            T   +E  ++G+ G LS+G+EA+IVDP+TG  +   + GEL ++GP+I KG F
Sbjct: 359 STESVEESLKYGAVGLLSSGIEARIVDPDTGRVMGVNQPGELWLKGPSISKGYF 412

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P25|4CLL2_ARATH 4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2

 Score =  254 bits (649), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 166/420 (39%), Positives = 232/420 (55%), Gaps = 41/420 (9%)

Query: 10  DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
           D KSGF  +T  F+S R P+ LPP       +D V+S  A+ P R       +++VTG R
Sbjct: 22  DRKSGFCESTSIFYSKREPMALPPNQF----LD-VTSFIASQPHRGK--TVFVDAVTGRR 74

Query: 70  VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
           +SF E       +A  L  +  + K +   +LS NSI  PI+  S++SLG II+ ANP+N
Sbjct: 75  LSFPELWLGVERVAGCLYALG-VRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPIN 133

Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT---ILIDSPEFDSMTMSWNSKHELD- 185
           T  EIS+QI  S PV+AF T  +V KLA   +     +L+D  ++   + S+  + +L  
Sbjct: 134 TSDEISKQIGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMD--DYHVPSQSYGDRVKLVG 191

Query: 186 ---------------RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS---SFAS 227
                          + +V Q D AA++YSSGTTG  KGVML+HRNL A V +    F  
Sbjct: 192 RLETMIETEPSESRVKQRVNQDDTAALLYSSGTTGTSKGVMLSHRNLIALVQAYRARFGL 251

Query: 228 SPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAA 286
             + +       T+P  HI+G   F     AL  T VV+ +FD+  +L AVE  R ++ +
Sbjct: 252 EQRTIC------TIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVETHRSSYLS 305

Query: 287 VTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
           + PPIVVAM  G +     YDLSSL TV  G APL ++    F   +PKV ++Q YGLTE
Sbjct: 306 LVPPIVVAMVNGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKILQGYGLTE 365

Query: 345 STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
           STA        +E +R+G++G L+  +E KIVDP+TG  L   + GEL IR PT+MKG F
Sbjct: 366 STAIAASMFNKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRSPTVMKGYF 425

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q84P26|4CLL8_ARATH 4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2

 Score =  246 bits (628), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 153/419 (36%), Positives = 228/419 (54%), Gaps = 27/419 (6%)

Query: 3   KKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI 62
           +++  L D ++GF ++  TF+S R P+ LP +++ +    ++SS      +R     A I
Sbjct: 5   QRSSSLIDPRNGFCTSNSTFYSKRKPLALPSKES-LDITTFISSQT----YRGK--TAFI 57

Query: 63  NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVII 122
           ++ T  R+SFS+     + +A  L +   + + D   VLS N+I IPI+  S++SLG ++
Sbjct: 58  DAATDHRISFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVL 117

Query: 123 SPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-------- 174
           + ANP+NT SEI RQI  SNP +AF T  +  K+A     +I+++  E D++        
Sbjct: 118 TTANPLNTASEILRQIADSNPKLAFTTPELAPKIAS-SGISIVLERVE-DTLRVPRGLKV 175

Query: 175 ------TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
                  M      +  R +V + D A ++YSSGTTGR KGV  +H NL A VA  + + 
Sbjct: 176 VGNLTEMMKKEPSGQAVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVAR-YIAE 234

Query: 229 PKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
           P        + T+P FH +GL  F     AL  T V++ RFDL  M+ AVE++R T   +
Sbjct: 235 PFEQPQQTFICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLIL 294

Query: 288 TPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
            PP++V M          YD+S L TV CG APL K+    F  K+P V + Q Y LTES
Sbjct: 295 VPPVLVTMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTES 354

Query: 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
                     +E RR+G+ G LS G+EA+IVDP TG  +   + GEL ++GP+I KG F
Sbjct: 355 NGAGASIESVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYF 413

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q69RG7|4CLL7_ORYSJ 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1

 Score =  239 bits (611), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 157/404 (38%), Positives = 221/404 (54%), Gaps = 18/404 (4%)

Query: 11  TKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYV-----SSLRATLPWRDDDTVALINSV 65
           T++G+ +ATK+F SLRPP+ LPP D P+S  ++       S  ++         AL+++ 
Sbjct: 15  TRTGYCAATKSFRSLRPPVPLPPPDVPLSFPEFAFSLLPRSSSSSSSSLLPANPALVDAA 74

Query: 66  TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125
           TG  VSF  F  R  +LA  L++   L   D AFVL+   +++P+LYF+LLS+G ++SPA
Sbjct: 75  TGEAVSFQAFLSRVRALAGALRSRVGLRGGDVAFVLAPAGLDVPVLYFALLSIGAVVSPA 134

Query: 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSW---NSKH 182
           NP  T +E+SR + LS   +AFA SS   KL       +L+DSP F S+ M       + 
Sbjct: 135 NPALTPAEVSRLVSLSGASVAFAVSSTATKLPAGLTTVVLLDSPHFRSLLMDCGQAQGQE 194

Query: 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242
            L    V QS+ AAI YSSGTTGRVK   L HR+  A VA  F +   +      L   P
Sbjct: 195 PLPVVVVRQSETAAIQYSSGTTGRVKAAALPHRSFIAMVA-GFHALRAKAREVRTLLGAP 253

Query: 243 YFHIYGLFFCFRAAALMETAVV----MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
            FH  G  F  +  AL  T VV    + R  ++ +++A E + V     +PP+V+ M+K 
Sbjct: 254 MFHSMGFLFVLQGVALGATTVVVTDAVARAGIRGLVEAAERWAVMDMTASPPVVLGMTK- 312

Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358
                  L +LE + CG APL    I  F  +FP V L   YG TE+  G+ R +  +EC
Sbjct: 313 ---QRCRLPALERITCGGAPLPAPAIERFRRRFPHVDLCMGYGSTEA-GGISRMISQEEC 368

Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
              GS GR++  +E KIVD  TG  LP G++GEL +RGP +M G
Sbjct: 369 NHIGSAGRVTENVEVKIVDHVTGKPLPAGQQGELWVRGPAVMTG 412

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q10S72|4CLL4_ORYSJ 4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1

 Score =  238 bits (608), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 158/422 (37%), Positives = 236/422 (55%), Gaps = 33/422 (7%)

Query: 4   KTPQL-FDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI 62
           ++P++  D +SG+ +AT+TF S R  + LP  D  +  V +++S R +        VAL+
Sbjct: 3   RSPEMEVDARSGYCAATRTFRSRRADVPLP-ADPEVDVVSFLASRRHS------GVVALV 55

Query: 63  NSVTGLRVSFSEFTRRTNSLASYLQ-NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI 121
           ++ TG R++F+E  R     AS L  +   L K   A +LS NS+  P+   + +SLG +
Sbjct: 56  DAATGRRITFTELWRAVAGAASALAAHPVSLRKGHVALILSPNSVHFPVAALAAMSLGAV 115

Query: 122 ISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-RTILIDSPEF--DS----- 173
           ++ ANP+NT +EI++Q+  + PV+AF T  ++ KL +    R +L++S     DS     
Sbjct: 116 LTTANPLNTPAEIAKQVADARPVLAFTTRELLPKLPRAHDLRVVLLESARLPGDSSDPRI 175

Query: 174 -MTMSWNSKHELDRAK----VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS----- 223
             T+   S    D A+    V Q D A ++YSSGTTG  KGV+ THR+L + V       
Sbjct: 176 VATIEEISATTPDPARRKDRVTQDDPATLLYSSGTTGPSKGVVATHRSLISMVQIIMTRF 235

Query: 224 SFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRV 282
               S K  +    L T+P FH+YGL  F         T VV+ +++L  ML+++  + V
Sbjct: 236 RLEGSDKTET---FLCTVPMFHVYGLVAFATGLLGCGATVVVLSKYELPEMLRSINAYGV 292

Query: 283 THAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
           T+  + PPI+VAM          L  +  V  G APLGK+ I  F  K+P+V ++Q YGL
Sbjct: 293 TYLPLVPPILVAMV--AHPKPLPLGQMRKVLSGGAPLGKELIEGFREKYPQVEILQGYGL 350

Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           TESTA    T   +E RR+G+ G LS   EAKIVDP++G++LP  + GEL IRGP +MKG
Sbjct: 351 TESTAIGASTDSAEESRRYGTAGLLSPNTEAKIVDPDSGEALPVNRTGELWIRGPYVMKG 410

Query: 403 IF 404
            F
Sbjct: 411 YF 412

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
224133070	548	4-coumarate-coa ligase [Populus trichoca	0.977	0.729	0.633	1e-145
225452165	543	PREDICTED: 4-coumarate--CoA ligase-like	0.970	0.731	0.604	1e-133
444475573	540	4-coumarate CoA ligase [Lonicera japonic	0.960	0.727	0.624	1e-132
255536983	540	AMP dependent CoA ligase, putative [Rici	0.963	0.729	0.587	1e-126
225452163	541	PREDICTED: 4-coumarate--CoA ligase-like	0.946	0.715	0.541	1e-118
296090250	513	unnamed protein product [Vitis vinifera]	0.897	0.715	0.564	1e-116
224149251	341	predicted protein [Populus trichocarpa]	0.821	0.985	0.615	1e-114
255547814	548	AMP dependent CoA ligase, putative [Rici	0.970	0.724	0.542	1e-112
359491536	851	PREDICTED: 4-coumarate--CoA ligase-like	0.977	0.470	0.513	1e-110
225425844	550	PREDICTED: 4-coumarate--CoA ligase-like	0.948	0.705	0.525	1e-110

>gi|224133070|ref|XP_002327954.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|224133074|ref|XP_002327955.1| acyl:coa ligase [Populus trichocarpa] gi|222837363|gb|EEE75742.1| 4-coumarate-coa ligase [Populus trichocarpa] gi|222837364|gb|EEE75743.1| acyl:coa ligase [Populus trichocarpa]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 258/407 (63%), Positives = 312/407 (76%), Gaps = 7/407 (1%)

Query: 1   MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATL-PWRDDDTV 59
           M+++     + KSGFNS+ KTFHSLRPPI LPPE+ P SA DY  SL A   PW   D++
Sbjct: 1   MDQQANSPINPKSGFNSSAKTFHSLRPPIHLPPEETPFSAADYALSLHANHSPW--PDSL 58

Query: 60  ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
           A+INS T  ++S+S+F  R  SL  YLQNVT+L KNDTAF+L  NSI++PILYFSLLSLG
Sbjct: 59  AIINSSTSQKLSYSDFIERIKSLTLYLQNVTQLRKNDTAFILCPNSIQVPILYFSLLSLG 118

Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-TMS- 177
           V+ISPANP++TESEIS QI LSNPVIAFA S   HKL KLKH TILIDSPEFDS+ TMS 
Sbjct: 119 VVISPANPISTESEISHQISLSNPVIAFAISKTCHKLPKLKHGTILIDSPEFDSIITMSP 178

Query: 178 --WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA 235
               ++ +L++  V QSD+AAIM+SSGTTG+VKGVMLTHRNL A +A  +    +R SP 
Sbjct: 179 ATTTARQDLEKVTVNQSDLAAIMFSSGTTGKVKGVMLTHRNLMAVIAGYYPFKQERKSPT 238

Query: 236 VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295
           VML+T+PYFH++G F+ F++ AL ET VVM+RFDLK ML+AVE+FRVTH AV PP+VVAM
Sbjct: 239 VMLYTVPYFHVFGFFYSFKSVALSETVVVMERFDLKKMLRAVEKFRVTHLAVAPPVVVAM 298

Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP 355
           +K   TDGYDL SLETV CG APLGKD +  FA +FP V L Q YGLTEST  + R+  P
Sbjct: 299 AKSDLTDGYDLRSLETVGCGGAPLGKDVMKVFADRFPTVDLWQGYGLTESTGVLSRSNSP 358

Query: 356 DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           +E R WGS GRL+A  EAKIVD +TGD+LPPGK+GEL +RG TIMKG
Sbjct: 359 EESRHWGSVGRLTACCEAKIVDADTGDALPPGKQGELWVRGSTIMKG 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452165|ref|XP_002270592.1| PREDICTED: 4-coumarate--CoA ligase-like 9 [Vitis vinifera]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/402 (60%), Positives = 298/402 (74%), Gaps = 5/402 (1%)

Query: 1   MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
           MEK    + D KSGF SATKTFHSL+P ++LPP+   +SA  Y  SLR+ L     D+ A
Sbjct: 1   MEKSNLHI-DPKSGFCSATKTFHSLKPTVELPPQHLLLSADAYAFSLRSGLGC--PDSAA 57

Query: 61  LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
           LINS TG R+ +SEF  R+ +LA+YLQ V  LSK DTAFVLS+N I++PILYFSLLSLGV
Sbjct: 58  LINSTTGHRLLYSEFALRSKTLAAYLQTVIGLSKGDTAFVLSSNLIQVPILYFSLLSLGV 117

Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
           IISPANP+NT+SEISR I+L  PVIAF+ S+  HKL  L HRT++IDS EFDSM      
Sbjct: 118 IISPANPINTQSEISRLIELCKPVIAFSISTAAHKLPSLHHRTVIIDSFEFDSMMT--GP 175

Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
             EL   +V QSD+AAIMYSSGTTGRVKGVMLTHRNL A  AS       R SP V+L+T
Sbjct: 176 IRELVPVEVSQSDLAAIMYSSGTTGRVKGVMLTHRNLIAMTASIHEGQSVRSSPDVLLYT 235

Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
           +P+FH+ G F+C ++ AL ET VVM+RFDL+ ML  VE+F+VTH AV PP++VAM+KG +
Sbjct: 236 VPFFHMIGFFYCVKSVALNETVVVMERFDLRRMLTLVEKFKVTHMAVVPPVLVAMAKGDA 295

Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
           TD  DL+SLE+V+CG APLGKD   AF +KFP V + Q YGLTES+  V R + P+ECR 
Sbjct: 296 TDNNDLTSLESVSCGGAPLGKDLCQAFTAKFPNVAIRQGYGLTESSGAVSRLLDPEECRH 355

Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           WGS GRL+   EAKIVDP+TG +LPP K+GEL +RGP +MKG
Sbjct: 356 WGSVGRLTGIFEAKIVDPDTGLALPPCKQGELWVRGPAVMKG 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444475573|gb|AGE10595.1| 4-coumarate CoA ligase [Lonicera japonica]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/402 (62%), Positives = 302/402 (75%), Gaps = 9/402 (2%)

Query: 1   MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
           MEK     FD  SGF+S TKTFHSL PP+ LPPE A IS+  Y  SL+ T PW   D+  
Sbjct: 1   MEK-----FDPNSGFSSQTKTFHSLTPPLPLPPETALISSATYSLSLQLTSPW--PDSTX 53

Query: 61  LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
           LI+S TG R+S+S+FT +TN+L+S LQ+   LSK D AF+LS NS++IP+LYFSLLSLGV
Sbjct: 54  LIDSATGQRLSYSQFTTQTNNLSSSLQSHLGLSKGDVAFILSLNSLQIPLLYFSLLSLGV 113

Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
           IISP+NP +TESEISRQI+LS PVIAFATS+  HK+  L+H T+LIDSPEF SMT S  S
Sbjct: 114 IISPSNPSSTESEISRQIKLSKPVIAFATSATSHKIPALRHGTVLIDSPEFVSMTTS--S 171

Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
             EL    V Q D+AAIMYSSGTTG+VKGVMLTHRNLTA VA+  A  P+R SPAV+L+T
Sbjct: 172 GRELSCVGVSQCDIAAIMYSSGTTGQVKGVMLTHRNLTAIVANYHALRPERKSPAVVLYT 231

Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
           MPYFH+ GLF C ++ AL ET VVM+RF+LK ML+AVEE RVT+ A+ PP+VVAM+K   
Sbjct: 232 MPYFHVIGLFCCMKSVALSETVVVMERFNLKRMLRAVEELRVTNVAMAPPVVVAMTKAEV 291

Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
           T  YDL SLE   CG APLGKD I AF +KFP V+L Q YG+TE+    FR V P+E  R
Sbjct: 292 TKEYDLKSLEGFGCGGAPLGKDVIAAFTAKFPGVLLTQGYGMTETAGPAFRAVTPEESFR 351

Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           WGS GRL A  EA+IVDP+TG +LPPGK+GEL ++GP  MKG
Sbjct: 352 WGSVGRLQANCEARIVDPDTGTALPPGKQGELWLKGPITMKG 393

Source: Lonicera japonica

Species: Lonicera japonica

Genus: Lonicera

Family: Caprifoliaceae

Order: Dipsacales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536983|ref|XP_002509558.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223549457|gb|EEF50945.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/402 (58%), Positives = 283/402 (70%), Gaps = 8/402 (1%)

Query: 1   MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
           M++ T    D KSGFN  TK FHSLRP +DLP EDA IS  DY  S        D  ++A
Sbjct: 1   MDQTTSASVDPKSGFNRITKIFHSLRPTVDLPSEDASISVADYALSSSP-----DFGSLA 55

Query: 61  LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
           LI+S +G  +S+S+F   T SL  YL NV +LSKND AFVL   S +IPILYFSLLSLGV
Sbjct: 56  LIDSSSGHGISYSDFYLFTKSLTCYLHNVIKLSKNDVAFVLCPKSTKIPILYFSLLSLGV 115

Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
           IISP+NP+NTE EISRQI LS PVIAFATSS  HK+ KL H+TIL+DSPEF+S+  +   
Sbjct: 116 IISPSNPLNTELEISRQISLSKPVIAFATSSTAHKIPKLNHKTILLDSPEFNSILTTSCP 175

Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
            HELD+  V QSD+A I YSSGTTG+VK VMLTHRNLTA V    A   ++   AV L  
Sbjct: 176 THELDKVTVRQSDLAGIFYSSGTTGKVKAVMLTHRNLTAVVGGYLALKQEK---AVTLNP 232

Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
           +PYFH+YG F+  ++ AL E  VVM++F+LK ML+AV+EFRVT  AV PPIVV M K G 
Sbjct: 233 VPYFHVYGFFYSLKSVALREVVVVMEKFELKKMLRAVQEFRVTQLAVAPPIVVQMVKDGL 292

Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
           TD YDL SL+ V CGAAPLG+D I AF ++FP V L Q YGLTES+    R  GP E   
Sbjct: 293 TDCYDLRSLQAVGCGAAPLGRDVIAAFKARFPTVELWQGYGLTESSGVCSRATGPGESHC 352

Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           WGS GRL+A  + KIV+P+T  +L PGK+GEL I+GPTIMKG
Sbjct: 353 WGSVGRLTAYCKVKIVNPDTMVALLPGKQGELWIKGPTIMKG 394

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452163|ref|XP_002270555.1| PREDICTED: 4-coumarate--CoA ligase-like 9-like [Vitis vinifera]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/393 (54%), Positives = 281/393 (71%), Gaps = 6/393 (1%)

Query: 10  DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
           D +SGF + T+TFHSLRP + LPPE+  +SA  Y  SLRA  P   DD+  +INS TG R
Sbjct: 9   DPRSGFCAETRTFHSLRPTVQLPPENVLLSADAYTYSLRAPSP--GDDSPVIINSTTGQR 66

Query: 70  VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
           +S+SEF RR+ +LA+YLQ++  L+K D A++LS N I++P+LYF+LLSLGV++SPANP+N
Sbjct: 67  LSYSEFVRRSKTLAAYLQSIVGLNKGDAAYILSNNLIQVPVLYFALLSLGVVVSPANPIN 126

Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKV 189
           T++E++RQ QL  PVIAF  S+ VHK+ KL++ TI+IDS EF+ M  S   + E+   KV
Sbjct: 127 TKAEVARQTQLCRPVIAFTISTAVHKIPKLRYGTIVIDSFEFELMMTS--PRREMVDVKV 184

Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
            QSD+A IMYSSGTTG VKGVM+THRNL A   S      K  SP V+L  +PYFH+YG 
Sbjct: 185 SQSDLAGIMYSSGTTGNVKGVMVTHRNLIAMTGSYMQR--KANSPVVLLQIVPYFHVYGF 242

Query: 250 FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
            + F+  A+  T V+M+++DL+  + AVE+++VT  AV PP+VVAMSK   T+G DLSSL
Sbjct: 243 HYVFKCMAMNVTVVIMEKYDLEKTIDAVEKYKVTDLAVAPPVVVAMSKKAVTEGRDLSSL 302

Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSA 369
           ETVA G APLGK+ I AF +KFP  V+ Q YG+TE    +   +  +EC RWGS+G+   
Sbjct: 303 ETVASGGAPLGKELIEAFTAKFPGTVISQGYGMTEVIGRISEALDREECSRWGSSGKFPG 362

Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             EAKIVD ETG SLPP K GEL ++GP+IMKG
Sbjct: 363 IWEAKIVDQETGASLPPLKRGELWVKGPSIMKG 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090250|emb|CBI40069.3| unnamed protein product [Vitis vinifera]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/402 (56%), Positives = 274/402 (68%), Gaps = 35/402 (8%)

Query: 1   MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
           MEK    + D KSGF SATKTFHSL+P ++LPP+   +SA  Y  SLR+ L     D+ A
Sbjct: 1   MEKSNLHI-DPKSGFCSATKTFHSLKPTVELPPQHLLLSADAYAFSLRSGLGC--PDSAA 57

Query: 61  LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
           LINS TG R+ +SEF  R+ +LA+YLQ V  LSK DTAFVLS+N I++PILYFSLLSLGV
Sbjct: 58  LINSTTGHRLLYSEFALRSKTLAAYLQTVIGLSKGDTAFVLSSNLIQVPILYFSLLSLGV 117

Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
           IISPANP+NT+SEISR I+L  PVIAF+ S+  HKL  L HRT++IDS EFDSM      
Sbjct: 118 IISPANPINTQSEISRLIELCKPVIAFSISTAAHKLPSLHHRTVIIDSFEFDSMMT--GP 175

Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
             EL   +V QSD+AAIMYSSGTTGRVKGVMLTHRNL A  AS       R SP V+   
Sbjct: 176 IRELVPVEVSQSDLAAIMYSSGTTGRVKGVMLTHRNLIAMTASIHEGQSVRSSPDVL--- 232

Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
                                      FDL+ ML  VE+F+VTH AV PP++VAM+KG +
Sbjct: 233 ---------------------------FDLRRMLTLVEKFKVTHMAVVPPVLVAMAKGDA 265

Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
           TD  DL+SLE+V+CG APLGKD   AF +KFP V + Q YGLTES+  V R + P+ECR 
Sbjct: 266 TDNNDLTSLESVSCGGAPLGKDLCQAFTAKFPNVAIRQGYGLTESSGAVSRLLDPEECRH 325

Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           WGS GRL+   EAKIVDP+TG +LPP K+GEL +RGP +MKG
Sbjct: 326 WGSVGRLTGIFEAKIVDPDTGLALPPCKQGELWVRGPAVMKG 367

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224149251|ref|XP_002336775.1| predicted protein [Populus trichocarpa] gi|222836688|gb|EEE75081.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/343 (61%), Positives = 261/343 (76%), Gaps = 7/343 (2%)

Query: 1   MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATL-PWRDDDTV 59
           M+++     + KSGFNS+ KTFHSLRPPI LPPE+ P SA DY  SL A   PW   D++
Sbjct: 1   MDQQANSPINPKSGFNSSAKTFHSLRPPIHLPPEETPFSAADYALSLHANHSPW--PDSL 58

Query: 60  ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
           A+INS T  ++S+S+F  R  SL  YLQNVT+L KNDTAF+L  NSI++PILYFSLLSLG
Sbjct: 59  AIINSSTSQKLSYSDFIERIKSLTLYLQNVTQLRKNDTAFILCPNSIKVPILYFSLLSLG 118

Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-TMS- 177
           V+ISPAN ++TESEIS QI LS+PVIAFA S   HKL KLK+ TILIDSPEFDS+ TMS 
Sbjct: 119 VVISPANLISTESEISHQISLSSPVIAFAISKTCHKLPKLKYGTILIDSPEFDSIITMSP 178

Query: 178 --WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA 235
               ++ +L++  V QSD+AAIM+SSGTTG+VKGV+LTHRNL A +A  +    +R SP 
Sbjct: 179 ATTTTRQDLEKVTVNQSDLAAIMFSSGTTGKVKGVLLTHRNLMAVIAGYYPFKQERKSPT 238

Query: 236 VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295
           V+L+T+PYFH++G F+ F++ AL ET VVM+RFDLK ML+AVE+FRVTH AV PP+VVAM
Sbjct: 239 VLLYTVPYFHVFGFFYSFKSIALSETVVVMERFDLKKMLRAVEKFRVTHLAVAPPVVVAM 298

Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338
           +K   TDGYDL SLETV CG APLGKD +  FA +FP V L Q
Sbjct: 299 TKSDLTDGYDLRSLETVGCGGAPLGKDVMKVFADRFPTVDLWQ 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547814|ref|XP_002514964.1| AMP dependent CoA ligase, putative [Ricinus communis] gi|223546015|gb|EEF47518.1| AMP dependent CoA ligase, putative [Ricinus communis]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/404 (54%), Positives = 274/404 (67%), Gaps = 7/404 (1%)

Query: 1   MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
           +EK      D KSGF S TKTF+SLR    LPP  +PIS  D++ SL  + P     T A
Sbjct: 4   IEKNPSSSIDPKSGFCSKTKTFYSLRSLAQLPPLASPISVTDFIFSLLQSFP-PSAATPA 62

Query: 61  LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
           LI++VTG R+S+ EF   T SL+SYL  V  L K DTAF+LS NS+ IPI+ FSLLSLGV
Sbjct: 63  LIDAVTGHRISYPEFIILTKSLSSYLHIVLGLRKGDTAFILSPNSVHIPIICFSLLSLGV 122

Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
           I+SP NP ++ESEI  QI LS PV+AF T    HK+  L   TI+IDS  F+S+    + 
Sbjct: 123 IVSPGNPASSESEIQHQIHLSKPVVAFVTGHTAHKITNLN--TIVIDSHWFESIRS--HR 178

Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
           + E  + ++ QSD AAI+YSSGTTGRVKGV+LTHRN T   A+  A    R +P V    
Sbjct: 179 EPEPVKPRIYQSDPAAILYSSGTTGRVKGVILTHRNFTYVAAAGHAVRAPRQTPPVSFCV 238

Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG-- 298
           +PYFH+YGL +  R   + ET V M RFD+KMMLKA+++FR+TH A+ PP+VVAM+KG  
Sbjct: 239 VPYFHVYGLSYFIRTLTVGETLVSMGRFDMKMMLKAIQDFRITHMALAPPVVVAMAKGNN 298

Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358
           G  DGYDLSSLE V CG APL +  +  F  KFP V+L QAYGLTESTA VF T+G +E 
Sbjct: 299 GMVDGYDLSSLEVVGCGGAPLRESVVQQFRKKFPNVILGQAYGLTESTARVFGTLGSEEG 358

Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           +  G+TG+L +  EAKIV PETG  LPPG  GE+ +RGP+IMKG
Sbjct: 359 QVMGATGKLMSNCEAKIVHPETGTHLPPGSPGEIWVRGPSIMKG 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491536|ref|XP_002279522.2| PREDICTED: 4-coumarate--CoA ligase-like 9-like [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/405 (51%), Positives = 276/405 (68%), Gaps = 5/405 (1%)

Query: 2   EKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTV-A 60
           E       D KSGF+  TKT+HSLRPP+  PP+  P+S  +YV SL  + P    +T   
Sbjct: 3   EMNGNHWIDPKSGFSPTTKTYHSLRPPVPFPPKHRPLSLAEYVISLLRSAPDSPLETTNV 62

Query: 61  LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
           LI++ +  R+S+S+F R+  SLA+ LQ +T LSK DTAF+L   S++IP++YFSLLSLGV
Sbjct: 63  LIDASSDYRLSYSQFLRQVQSLAASLQRITGLSKGDTAFILCPPSLKIPVIYFSLLSLGV 122

Query: 121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNS 180
            ISP NP+ ++SE+S QI L  P IAFA+S   HKL  L+  T+L+DS EFDSM M+ N 
Sbjct: 123 TISPTNPLGSDSEVSHQIHLCKPAIAFASSKTAHKLPSLRLGTVLVDSLEFDSM-MTENG 181

Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA---VM 237
                R +V QSD AAI+YSSGTTGRVKGV+LTHRNL   +A    +  ++       V 
Sbjct: 182 AGYGKRVEVSQSDPAAILYSSGTTGRVKGVLLTHRNLITLIAGFHHNRLEKEEDGPRPVS 241

Query: 238 LFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
           LFT+P FH++G F   RA +L ET V+M+RFD + MLKAVE++R+T+  V+PP+VVA++K
Sbjct: 242 LFTLPLFHVFGFFMLVRAVSLAETLVLMERFDFENMLKAVEKYRITYMPVSPPLVVALAK 301

Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357
                 YDLSSL+ +  G APLGK+    F+++FP V +VQ YGLTES  G       DE
Sbjct: 302 SEFVGKYDLSSLQLLGSGGAPLGKEVSERFSARFPNVQMVQGYGLTESGGGAAGMADLDE 361

Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            +R GS GRL   +EAKIVDP+TG++LPPG++GEL +RGPTIMKG
Sbjct: 362 AKRHGSVGRLMHDMEAKIVDPKTGEALPPGQQGELWLRGPTIMKG 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425844|ref|XP_002265545.1| PREDICTED: 4-coumarate--CoA ligase-like 9 [Vitis vinifera] gi|297738374|emb|CBI27575.3| unnamed protein product [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/392 (52%), Positives = 275/392 (70%), Gaps = 4/392 (1%)

Query: 12  KSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVS 71
            +GF S T  +HSLRP   LPPE AP+S  DYV S  +T     +  VA I++ TG  +S
Sbjct: 15  NTGFCSKTMIYHSLRPHPPLPPETAPLSLSDYVFSHLST-SSAPETAVAFIDATTGRSIS 73

Query: 72  FSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTE 131
           FS+  R + +LA+ LQ    L++ D+A V+S NS+ +P+LYF+L SLGVI+SP+NP +TE
Sbjct: 74  FSQLVRFSETLAASLQRRLGLTRGDSALVISPNSLHVPVLYFALFSLGVIVSPSNPASTE 133

Query: 132 SEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQ 191
           SEISRQI+L  PVIAFATSS  HK+  LK  T+++DSPEF SM M+  + + L R +V Q
Sbjct: 134 SEISRQIELCKPVIAFATSSTAHKVPSLKFSTVVLDSPEFHSM-MTVETGN-LRRVRVSQ 191

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251
           SD A I+YSSGTTGRVKGV+LTHRN  +AVA +     +R SP V + T+PYFH+YG   
Sbjct: 192 SDPAMILYSSGTTGRVKGVVLTHRNWISAVAGANVLRQERASPTVTMCTVPYFHVYGCGL 251

Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS-TDGYDLSSLE 310
           C RA AL ++ V ++R +++ ++ AV+EFRVTH AV PP++V M+ GG   DG DL SLE
Sbjct: 252 CMRAVALGQSVVAIERLNVRSLMSAVQEFRVTHLAVAPPVIVMMANGGDLVDGCDLRSLE 311

Query: 311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAG 370
            V CG AP+    I  F  +FP V++ QAYGLTE+T G+ RTVG +E +R G++GRL   
Sbjct: 312 AVLCGGAPVSTAVIERFKKRFPNVLVTQAYGLTETTGGISRTVGLEESQRLGASGRLIPY 371

Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            +AKIVDP+TG +LPP + GEL +RGP+IMKG
Sbjct: 372 CQAKIVDPDTGIALPPLRTGELWVRGPSIMKG 403

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	409
TAIR|locus:2158559	562	AT5G63380 [Arabidopsis thalian	0.968	0.704	0.482	3.9e-92
TAIR|locus:2034392	546	OPCL1 "OPC-8:0 CoA ligase1" [A	0.946	0.708	0.394	4.5e-66
TAIR|locus:2034403	550	AT1G20500 [Arabidopsis thalian	0.946	0.703	0.390	1.1e-64
TAIR|locus:2176662	550	4CL8 [Arabidopsis thaliana (ta	0.963	0.716	0.369	2.1e-61
TAIR|locus:2117209	566	AT4G19010 [Arabidopsis thalian	0.931	0.673	0.369	3.3e-56
TAIR|locus:2115673	544	AT4G05160 [Arabidopsis thalian	0.936	0.704	0.352	2.9e-55
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.823	0.606	0.366	1.8e-48
TAIR|locus:2015499	542	ACOS5 "acyl-CoA synthetase 5"	0.911	0.688	0.325	3.3e-47
TAIR|locus:2034423	565	AT1G20480 [Arabidopsis thalian	0.948	0.686	0.364	1.4e-46
FB|FBgn0039156	544	CG6178 [Drosophila melanogaste	0.508	0.382	0.390	7.6e-45

TAIR|locus:2158559 AT5G63380 [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 197/408 (48%), Positives = 270/408 (66%)

Query:     7 QLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLR------ATLPWRDDDTVA 60
             +L D  SGF+  T  +HSLRP + LPP D P+SA ++  SL       AT     +    
Sbjct:     9 RLIDRSSGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTY 68

Query:    61 LINSVTGLRVSFSEFTRRTNSLA-SYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
             L+NS +G  +++ E  RR  SLA S  +    L+  + AF+LS +S++IP+LY +L+S+G
Sbjct:    69 LVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIG 128

Query:   120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDS-MTM 176
             V++SPANP+ +ESE+S Q+++S PVIAFATS  V KL  + L   T+L+DS EF S +  
Sbjct:   129 VVVSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEFLSWLNR 188

Query:   177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR-VS-P 234
             S +S     + +V QSD AAI++SSGTTGRVKGV+LTHRNL A+ A S   + +  V+  
Sbjct:   189 SDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTAVSHQRTLQDPVNYD 248

Query:   235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
              V LF++P FH++G     RA +L ET V++ RF+L+ M KAVE+++VT   V+PP++VA
Sbjct:   249 RVGLFSLPLFHVFGFMMMIRAISLGETLVLLGRFELEAMFKAVEKYKVTGMPVSPPLIVA 308

Query:   295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
             + K   T  YDL SL ++ CG APLGKD    F  KFP V +VQ YGLTES+     T G
Sbjct:   309 LVKSELTKKYDLRSLRSLGCGGAPLGKDIAERFKQKFPDVDIVQGYGLTESSGPAASTFG 368

Query:   355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             P+E  ++GS GR+S  +EAKIVDP TG+SLPPGK GEL +RGP IMKG
Sbjct:   369 PEEMVKYGSVGRISENMEAKIVDPSTGESLPPGKTGELWLRGPVIMKG 416

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2034392 OPCL1 "OPC-8:0 CoA ligase1" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
 Identities = 161/408 (39%), Positives = 235/408 (57%)

Query:    10 DTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLR 69
             +++SGF ++  TF+S R PI LPP  + +    ++SS +A         +A I++ TG  
Sbjct:     5 NSRSGFCNSNSTFYSKRTPIPLPPNPS-LDVTTFISS-QA-----HRGRIAFIDASTGQN 57

Query:    70 VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
             ++F+E  R   S+A  L  +  + K     +LS NSI  P++  S++SLG II+  NP+N
Sbjct:    58 LTFTELWRAVESVADCLSEIG-IRKGHVVLLLSPNSILFPVVCLSVMSLGAIITTTNPLN 116

Query:   130 TESEISRQIQLSNPVIAFATSSVVHKL--AKLKHRTILIDSPEFDSM-----TMSWNSKH 182
             T +EI++QI+ SNPV+AF TS ++ K+  A  K   +L+D    DS+      +    K 
Sbjct:   117 TSNEIAKQIKDSNPVLAFTTSQLLPKISAAAKKLPIVLMDEERVDSVGDVRRLVEMMKKE 176

Query:   183 EL-DRAK--VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF 239
                +R K  V Q D A ++YSSGTTG  KGV+ +HRNL A V +              + 
Sbjct:   177 PSGNRVKERVDQDDTATLLYSSGTTGMSKGVISSHRNLIAMVQTIVNRFGSDDGEQRFIC 236

Query:   240 TMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
             T+P FHIYGL  F     A   T +V+ +F++  M+ A+ +++ T   + PPI+VAM  G
Sbjct:   237 TVPMFHIYGLAAFATGLLAYGSTIIVLSKFEMHEMMSAIGKYQATSLPLVPPILVAMVNG 296

Query:   299 GST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
                    YDLSS+ TV CG APL K+    FA K+P V ++Q YGLTEST     T   +
Sbjct:   297 ADQIKAKYDLSSMHTVLCGGAPLSKEVTEGFAEKYPTVKILQGYGLTESTGIGASTDTVE 356

Query:   357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
             E RR+G+ G+LSA +E +IVDP TG  L P + GEL ++GP+IMKG F
Sbjct:   357 ESRRYGTAGKLSASMEGRIVDPVTGQILGPKQTGELWLKGPSIMKGYF 404

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IMP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2034403 AT1G20500 [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 161/412 (39%), Positives = 232/412 (56%)

Query:     8 LFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG 67
             + D +SGF  +  TF+S R P+ LPP    +S  D V++  ++ P R     A I++ TG
Sbjct:     9 IVDPRSGFCKSNSTFYSKRQPLSLPPN---LSR-D-VTTFISSQPHRGK--TAFIDAATG 61

Query:    68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
               ++FS+  R  + +A  L +   + + D   +LS NSI IP++  S++SLG + + AN 
Sbjct:    62 QCLTFSDLWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANT 121

Query:   128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMT--------MSWN 179
             +NT  EIS+QI  SNP + F T  +  KL  +    +L D   +  +T        +S  
Sbjct:   122 LNTSGEISKQIADSNPTLVFTTRQLAPKLP-VAISVVLTDDEVYQELTSAIRVVGILSEM 180

Query:   180 SKHELD----RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA 235
              K E      R +V Q D A ++YSSGTTG  KGV+ +HRNLTA VA   + + KR    
Sbjct:   181 VKKEPSGQRVRDRVNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARFISDNLKRDD-- 238

Query:   236 VMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
             + + T+P FH YGL  F     AL  T V+++RF L  M+ AVE+ R T  A+ PP++VA
Sbjct:   239 IFICTVPMFHTYGLLTFAMGTVALGSTVVILRRFQLHDMMDAVEKHRATALALAPPVLVA 298

Query:   295 MSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
             M          YDLSSL+TV CG APL K+    F  K+P V ++Q Y LTES  G   T
Sbjct:   299 MINDADLIKAKYDLSSLKTVRCGGAPLSKEVTEGFLEKYPTVDILQGYALTESNGGGAFT 358

Query:   353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
                +E RR+G+ G L++ +EA+IVDP TG  +   + GEL ++GP+I KG F
Sbjct:   359 NSAEESRRYGTAGTLTSDVEARIVDPNTGRFMGINQTGELWLKGPSISKGYF 410

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2176662 4CL8 [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 154/417 (36%), Positives = 229/417 (54%)

Query:     3 KKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI 62
             +++  L D ++GF ++  TF+S R P+ LP +++ +    ++SS      +R     A I
Sbjct:     5 QRSSSLIDPRNGFCTSNSTFYSKRKPLALPSKES-LDITTFISSQT----YRGK--TAFI 57

Query:    63 NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVII 122
             ++ T  R+SFS+     + +A  L +   + + D   VLS N+I IPI+  S++SLG ++
Sbjct:    58 DAATDHRISFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVL 117

Query:   123 SPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTIL--IDS----PE----FD 172
             + ANP+NT SEI RQI  SNP +AF T  +  K+A      +L  ++     P       
Sbjct:   118 TTANPLNTASEILRQIADSNPKLAFTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVG 177

Query:   173 SMT--MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230
             ++T  M      +  R +V + D A ++YSSGTTGR KGV  +H NL A VA  + + P 
Sbjct:   178 NLTEMMKKEPSGQAVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHVAR-YIAEPF 236

Query:   231 RVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTP 289
                    + T+P FH +GL  F     AL  T V++ RFDL  M+ AVE++R T   + P
Sbjct:   237 EQPQQTFICTVPLFHTFGLLNFVLATLALGTTVVILPRFDLGEMMAAVEKYRATTLILVP 296

Query:   290 PIVVAM-SKGGST-DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
             P++V M +K       YD+S L TV CG APL K+    F  K+P V + Q Y LTES  
Sbjct:   297 PVLVTMINKADQIMKKYDVSFLRTVRCGGAPLSKEVTQGFMKKYPTVDVYQGYALTESNG 356

Query:   348 GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
                     +E RR+G+ G LS G+EA+IVDP TG  +   + GEL ++GP+I KG F
Sbjct:   357 AGASIESVEESRRYGAVGLLSCGVEARIVDPNTGQVMGLNQTGELWLKGPSIAKGYF 413

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TAIR|locus:2117209 AT4G19010 [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 149/403 (36%), Positives = 225/403 (55%)

Query:    15 FNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSE 74
             F+S T  + S  P + LP  D  + AV  + S +        DT ALI+S+TG  +S +E
Sbjct:    25 FSSKTGIYTSKFPSLHLPV-DPNLDAVSALFSHK-----HHGDT-ALIDSLTGFSISHTE 77

Query:    75 FTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEI 134
                   S+A+ + +V  + + D   ++  NS+  P+++ SL+SLG I++  NP ++  EI
Sbjct:    78 LQIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEI 137

Query:   135 SRQIQLSNPVIAFATSSVVHKLAKLKHRTILI-DSPEFDSMTMS----WNSKHE----LD 185
              +Q+   +  +AF ++  V KL+ L    I + +S +FDS+ +     ++   E    + 
Sbjct:   138 KKQVSECSVGLAFTSTENVEKLSSLGVSVISVSESYDFDSIRIENPKFYSIMKESFGFVP 197

Query:   186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS--SFASSPKRV--SPAVMLFTM 241
             +  + Q DVAAIMYSSGTTG  KGV+LTHRNL A++     F +S      S  V L  +
Sbjct:   198 KPLIKQDDVAAIMYSSGTTGASKGVLLTHRNLIASMELFVRFEASQYEYPGSSNVYLAAL 257

Query:   242 PYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
             P  HIYGL  F     +L  T VVM+RFD   ++  +E F++TH  V PP+++A++K   
Sbjct:   258 PLCHIYGLSLFVMGLLSLGSTIVVMKRFDASDVVNVIERFKITHFPVVPPMLMALTKKAK 317

Query:   301 -TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR 359
                G    SL+ V+ GAAPL +  I  F    P V L+Q YG+TESTA   R    ++  
Sbjct:   318 GVCGEVFKSLKQVSSGAAPLSRKFIEDFLQTLPHVDLIQGYGMTESTAVGTRGFNSEKLS 377

Query:   360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             R+ S G L+  ++AK+VD  +G  LPPG  GEL I+GP +MKG
Sbjct:   378 RYSSVGLLAPNMQAKVVDWSSGSFLPPGNRGELWIQGPGVMKG 420

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

TAIR|locus:2115673 AT4G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 144/408 (35%), Positives = 225/408 (55%)

Query:    12 KSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVS 71
             KSG+      + SLRP + LP +D   S V ++    ++ P +    +A+ +S TG  ++
Sbjct:     3 KSGYGR-DGIYRSLRPTLVLP-KDPNTSLVSFLFRNSSSYPSK----LAIADSDTGDSLT 56

Query:    72 FSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTE 131
             FS+       LA     +  + KND   + + NS + P+ + ++ ++G + + ANP+ T 
Sbjct:    57 FSQLKSAVARLAHGFHRLG-IRKNDVVLIFAPNSYQFPLCFLAVTAIGGVFTTANPLYTV 115

Query:   132 SEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS-------PEFDSMTMSWNSKHEL 184
             +E+S+QI+ SNP I  + + +  K+       +L+ S       P  +S  +S+++  EL
Sbjct:   116 NEVSKQIKDSNPKIIISVNQLFDKIKGFDLPVVLLGSKDTVEIPPGSNSKILSFDNVMEL 175

Query:   185 DR-------AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA-VASSFASSPKRVSPAV 236
                       ++ QSD AA++YSSGTTG  KGV LTH N  AA +  +           V
Sbjct:   176 SEPVSEYPFVEIKQSDTAALLYSSGTTGTSKGVELTHGNFIAASLMVTMDQDLMGEYHGV 235

Query:   237 MLFTMPYFHIYGLFFCFRAAALMETAVV-MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295
              L  +P FH++GL     +      A+V M RF+L+++LK +E+FRVTH  V PP+ +A+
Sbjct:   236 FLCFLPMFHVFGLAVITYSQLQRGNALVSMARFELELVLKNIEKFRVTHLWVVPPVFLAL 295

Query:   296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP 355
             SK      +DLSSL+ +  GAAPLGKD +       P V+L+Q YG+TE T G+     P
Sbjct:   296 SKQSIVKKFDLSSLKYIGSGAAPLGKDLMEECGRNIPNVLLMQGYGMTE-TCGIVSVEDP 354

Query:   356 DECRR-WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
                +R  GS G L+ G+EA+IV  ETG S PP ++GE+ +RGP +MKG
Sbjct:   355 RLGKRNSGSAGMLAPGVEAQIVSVETGKSQPPNQQGEIWVRGPNMMKG 402

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0009695 "jasmonic acid biosynthetic process" evidence=IDA

GO:0009850 "auxin metabolic process" evidence=IDA

GO:0009851 "auxin biosynthetic process" evidence=IDA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 133/363 (36%), Positives = 199/363 (54%)

Query:    61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV 120
             LIN  TG   ++++    +  LA+ L N+  + ++D   +L  NS E+ + + +   +G 
Sbjct:    55 LINGPTGEVYTYADVHVTSRKLAAGLHNLG-VKQHDVVMILLPNSPEVVLTFLAASFIGA 113

Query:   121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILI---DS---PE---- 170
             I + ANP  T +EIS+Q + S   +    S  V K+  L++  +LI   DS   PE    
Sbjct:   114 ITTSANPFFTPAEISKQAKASAAKLIVTQSRYVDKIKNLQNDGVLIVTTDSDAIPENCLR 173

Query:   171 FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF-ASSP 229
             F  +T S   + +    K+   DV A+ +SSGTTG  KGVMLTH+ L  +VA      +P
Sbjct:   174 FSELTQSEEPRVDSIPEKISPEDVVALPFSSGTTGLPKGVMLTHKGLVTSVAQQVDGENP 233

Query:   230 KRV--SPAVMLFTMPYFHIYGL---FFC-FRAAALMETAVVMQRFDLKMMLKAVEEFRVT 283
                     V+L  +P FHIY L     C  R  A   T ++M +F++ ++L+ ++  +VT
Sbjct:   234 NLYFNRDDVILCVLPMFHIYALNSIMLCSLRVGA---TILIMPKFEITLLLEQIQRCKVT 290

Query:   284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
              A V PPIV+A++K   T+ YDLSS+  V  GAAPLGK+   A ++KFP   L Q YG+T
Sbjct:   291 VAMVVPPIVLAIAKSPETEKYDLSSVRMVKSGAAPLGKELEDAISAKFPNAKLGQGYGMT 350

Query:   344 ESTAGVFRTVG----PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399
             E+   +  ++G    P   +  G+ G +    E KI+DP+TGDSLP  K GE+ IRG  I
Sbjct:   351 EAGPVLAMSLGFAKEPFPVKS-GACGTVVRNAEMKILDPDTGDSLPRNKPGEICIRGNQI 409

Query:   400 MKG 402
             MKG
Sbjct:   410 MKG 412

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2015499 ACOS5 "acyl-CoA synthetase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 130/400 (32%), Positives = 207/400 (51%)

Query:    22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNS 81
             F SL P + +P +   ++  ++V  L+    + ++  VA + +VTG  V++ +  R T  
Sbjct:    13 FRSLYPSVPIPDK---LTLPEFV--LQGVEEYTEN--VAFVEAVTGKAVTYGDVVRDTKR 65

Query:    82 LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
             LA  L ++  L K     V+  N  E  I+   ++S G + S ANP    SEI +Q++ S
Sbjct:    66 LAKALTSLG-LRKGQVMVVVLPNVAEYGIIALGIMSAGGVFSGANPTALVSEIKKQVEAS 124

Query:   142 NP--VIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHEL-------DRAKVCQS 192
                 +I  AT+    K+  L    I++   + +   ++W    E        D  ++ Q+
Sbjct:   125 GARGIITDATN--YEKVKSLGLPVIVLGEEKIEG-AVNWKDLLEAGDKCGDTDNEEILQT 181

Query:   193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLFTMPYFHIYGLF- 250
             D+ A+ +SSGTTG  KGVMLTHRNL A + S+ F    + +   V L  +P+FHIYG+  
Sbjct:   182 DLCALPFSSGTTGLQKGVMLTHRNLIANLCSTLFGVRSEMIGQIVTLGLIPFFHIYGIVG 241

Query:   251 FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL- 309
              C          V M R+DL++ L A+    V+ A + PPI++ + K    D +DLS L 
Sbjct:   242 ICCATMKNKGKVVAMSRYDLRIFLNALIAHEVSFAPIVPPIILNLVKNPIVDEFDLSKLK 301

Query:   310 -ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR---RWGSTG 365
              ++V   AAPL  + + AF +KFP V + +AYGLTE +        P++ +   +  S G
Sbjct:   302 LQSVMTAAAPLAPELLTAFEAKFPNVQVQEAYGLTEHSCITLTHGDPEKGQGIAKRNSVG 361

Query:   366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFL 405
              +   LE K +DP+TG SLP    GEL +R   +M+G F+
Sbjct:   362 FILPNLEVKFIDPDTGRSLPKNTSGELCVRSQCVMQGYFM 401

GO:0003824 "catalytic activity" evidence=IEA

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS;IDA

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031956 "medium-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IDA

GO:0080110 "sporopollenin biosynthetic process" evidence=IMP;TAS

TAIR|locus:2034423 AT1G20480 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 156/428 (36%), Positives = 219/428 (51%)

Query:     1 MEKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVA 60
             +E +T  + D KSGF  +T  F+S R P+ LPP       +D V+S  A+ P R   TV 
Sbjct:    14 IESRTLAV-DRKSGFCESTSIFYSKREPMALPPNQF----LD-VTSFIASQPHRGK-TV- 65

Query:    61 LINSVTGLRVSFSEFTRRTNSLAS--YLQNVTR------LSKNDTAFV---LSTNSIEIP 109
              +++VTG R+SF E       +A   Y   V +      LS N   F    LS  S+   
Sbjct:    66 FVDAVTGRRLSFPELWLGVERVAGCLYALGVRKGNVVIILSPNSILFPIVSLSVMSLGAI 125

Query:   110 ILYFSLLSLGVIISP----ANPV---NTESEISRQIQLSN---PVIAFATSSVVHKLAKL 159
             I   + ++    IS     + PV    T   +S+    SN   PV+      V  +    
Sbjct:   126 ITTANPINTSDEISKQIGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMDDYHVPSQ--SY 183

Query:   160 KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA 219
               R  L+     ++M  +  S+  + + +V Q D AA++YSSGTTG  KGVML+HRNL A
Sbjct:   184 GDRVKLVG--RLETMIETEPSESRV-KQRVNQDDTAALLYSSGTTGTSKGVMLSHRNLIA 240

Query:   220 AVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVE 278
              V +  A           + T+P  HI+G   F     AL  T VV+ +FD+  +L AVE
Sbjct:   241 LVQAYRARFGLEQRT---ICTIPMCHIFGFGGFATGLIALGWTIVVLPKFDMAKLLSAVE 297

Query:   279 EFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL 336
               R ++ ++ PPIVVAM  G +     YDLSSL TV  G APL ++    F   +PKV +
Sbjct:   298 THRSSYLSLVPPIVVAMVNGANEINSKYDLSSLHTVVAGGAPLSREVTEKFVENYPKVKI 357

Query:   337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396
             +Q YGLTESTA        +E +R+G++G L+  +E KIVDP+TG  L   + GEL IR 
Sbjct:   358 LQGYGLTESTAIAASMFNKEETKRYGASGLLAPNVEGKIVDPDTGRVLGVNQTGELWIRS 417

Query:   397 PTIMKGIF 404
             PT+MKG F
Sbjct:   418 PTVMKGYF 425

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

FB|FBgn0039156 CG6178 [Drosophila melanogaster (taxid:7227)]

 Score = 363 (132.8 bits), Expect = 7.6e-45, Sum P(2) = 7.6e-45
 Identities = 82/210 (39%), Positives = 117/210 (55%)

Query:   193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252
             DV+ I+ SSGTTG  KGV LT  NL A + S    +   +    +L  +P+FH +G    
Sbjct:   192 DVSLIVCSSGTTGLPKGVQLTQMNLLATLDSQIQPTVIPMEEVTLLTVIPWFHAFGCLTL 251

Query:   253 FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
                A +    V + +F+ K+ L A+E++RV  A + PP++V ++K    D YDLSSL  +
Sbjct:   252 ITTACVGARLVYLPKFEEKLFLSAIEKYRVMMAFMVPPLMVFLAKHPIVDKYDLSSLMVL 311

Query:   313 ACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLE 372
              CGAAPL ++T      +     + Q YGL+EST  V   V  DE  + GS G L  G+ 
Sbjct:   312 LCGAAPLSRETEDQIKERIGVPFIRQGYGLSESTLSVL--VQNDEFCKPGSVGVLKVGIY 369

Query:   373 AKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             AK++DP+TG  L   + GEL  +G  IMKG
Sbjct:   370 AKVIDPDTGKLLGANERGELCFKGDGIMKG 399

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IDA

GO:0045289 "luciferin monooxygenase activity" evidence=IDA

GO:0006637 "acyl-CoA metabolic process" evidence=IDA

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	409
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	1e-135
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	4e-92
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	1e-84
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	6e-72
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	8e-72
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	6e-68
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	1e-61
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-58
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	3e-54
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	7e-54
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	2e-53
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	4e-53
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-45
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-44
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-42
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	7e-38
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	9e-38
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	4e-37
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-36
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	2e-36
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	2e-35
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	5e-35
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	9e-35
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	2e-32
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	3e-32
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	1e-31
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	1e-31
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	4e-31
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	3e-30
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	5e-30
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	6e-30
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	8e-29
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	2e-28
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	4e-27
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	1e-26
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	1e-26
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	6e-26
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	9e-26
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	9e-26
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	4e-25
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	6e-25
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	7e-25
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	1e-24
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-24
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	3e-24
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-24
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	9e-24
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-22
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	3e-22
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	5e-22
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	6e-22
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	6e-22
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	9e-22
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	1e-21
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	1e-21
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	2e-21
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-21
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	2e-21
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-21
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	3e-21
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	4e-21
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	1e-20
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-20
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	8e-20
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	9e-20
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-19
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-18
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	6e-18
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	7e-18
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	7e-18
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	3e-17
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	4e-17
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	7e-17
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	2e-16
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	2e-16
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-16
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-16
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	6e-16
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	9e-16
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	1e-15
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-15
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	4e-15
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	9e-15
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	1e-14
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-14
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	3e-14
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-13
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	1e-13
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	1e-13
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	2e-13
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	3e-13
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	3e-13
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	5e-13
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	7e-13
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	1e-12
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	2e-12
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-12
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	2e-12
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	5e-12
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	5e-12
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	1e-11
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	1e-11
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	4e-11
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	5e-11
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	7e-11
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	8e-11
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	1e-10
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	3e-10
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	4e-10
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	5e-10
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	7e-10
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	1e-09
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	1e-09
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	2e-09
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	3e-09
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	5e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	7e-09
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-08
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	1e-08
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	2e-08
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	3e-08
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	5e-08
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	5e-08
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	7e-08
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	3e-07
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-07
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	4e-07
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	4e-07
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	5e-07
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	5e-07
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	9e-07
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	9e-07
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-06
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	2e-06
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	2e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	2e-06
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	3e-06
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	7e-05
cd05913	424	cd05913, PaaK, Phenylacetate-CoA ligase (also know	7e-05
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-04
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	2e-04
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	3e-04
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	3e-04
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	4e-04
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	4e-04
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	7e-04
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	8e-04
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	0.001
cd05943	616	cd05943, AACS, Acetoacetyl-CoA synthetase (acetoac	0.001
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	0.001
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	0.001
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	0.002
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	0.002
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	0.003
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	0.004
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	0.004

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  397 bits (1023), Expect = e-135
 Identities = 157/379 (41%), Positives = 216/379 (56%), Gaps = 13/379 (3%)

Query: 32  PPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR 91
            P+D  + +   + +          D  ALI++ TG  ++++E  R    LA+ L     
Sbjct: 1   IPKDLSLDSASLLFASEFG------DRPALIDAATGRALTYAELERLVRRLAAGLAARG- 53

Query: 92  LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS 151
             K D   +LS NS+E P+++ ++LS G +++ ANP+ T +EI++Q++ S   +A  TS 
Sbjct: 54  GRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTANPLYTPAEIAKQVKDSGAKLAITTSE 113

Query: 152 VVHKLAKLK-HRTILIDSPEFDSMTMSWNSKH---ELDRAKVCQSDVAAIMYSSGTTGRV 207
           +  KLA L     +L+DS +  S  +         E     + Q DVAA+ YSSGTTGR 
Sbjct: 114 LAEKLASLALEPVVLLDSADDGSAAIDDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRS 173

Query: 208 KGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIYGL-FFCFRAAALMETAVVM 265
           KGVMLTHRNL A VA   A          V L  +P FHIYGL         L  T VVM
Sbjct: 174 KGVMLTHRNLIANVAQLVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVM 233

Query: 266 QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIM 325
            RFDL+  L A+E+++VTH  V PPIV+A+ K    D YDLSSL+ +  GAAPLGK+   
Sbjct: 234 PRFDLEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAE 293

Query: 326 AFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLP 385
           AF ++FP V L Q YG+TES+        P++  + GS GRL   +EAKIVDPETG+SLP
Sbjct: 294 AFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLP 353

Query: 386 PGKEGELSIRGPTIMKGIF 404
           P + GEL +RGP +MKG  
Sbjct: 354 PNQPGELWVRGPQVMKGYL 372

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  285 bits (731), Expect = 4e-92
 Identities = 124/360 (34%), Positives = 193/360 (53%), Gaps = 21/360 (5%)

Query: 60  ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
           ALI++ TG  ++F++  ++   LA  L+ +  L + D   ++S NSIE P ++   L+ G
Sbjct: 1   ALIDADTGTELTFADLLKKALRLAKGLRKL-GLKQGDVVALISPNSIEFPPVFLGCLAAG 59

Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------AKLKHRTILIDS----- 168
            I+S ANP  T  E++ Q+++S P + F     + K+           R I++DS     
Sbjct: 60  GIVSAANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGV 119

Query: 169 -PEFDSMTMSWNSKHEL--DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
               D +     ++ E         + D AA++YSSGTTG  KGVML+H+N+ A ++   
Sbjct: 120 LRIEDLLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQ 179

Query: 226 AS---SPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRV 282
            +   +P   +  V+ F +P++H YGL     +     T ++M +FD +  LK +E+++V
Sbjct: 180 DTLKGNPDSSNDVVLTF-LPFYHAYGLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKV 238

Query: 283 THAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
           T   + PPI VA++K    D YDLSSL  +  GAAPL K+       +FP   + Q YG+
Sbjct: 239 TSLFLVPPIAVALAKSPLVDKYDLSSLRVIFSGAAPLSKELQEELRKRFPNTTIKQGYGM 298

Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           TE+      T  P    + GS GRL   +EAKIVD + G SL P + GEL ++GP IMKG
Sbjct: 299 TETGPATTLT--PPGDEKPGSVGRLVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKG 356

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  268 bits (686), Expect = 1e-84
 Identities = 155/406 (38%), Positives = 225/406 (55%), Gaps = 27/406 (6%)

Query: 15  FNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSE 74
           ++  T  + S  PP+ LP  D  + AV ++ S        + DT ALI+S TG  +S+SE
Sbjct: 18  YSPETGIYSSKHPPVPLP-SDPNLDAVSFIFSHHN----HNGDT-ALIDSSTGFSISYSE 71

Query: 75  FTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEI 134
                 S+A+ L +V  + + D   +L  NS+  P+++ ++LSLG I++  NP ++  EI
Sbjct: 72  LQPLVKSMAAGLYHVMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEI 131

Query: 135 SRQIQLSNPVIAFATSSVVHKLAKLKHRTILI-DSPEFDSMTMSWNSKHELDRAK----- 188
            +++   +  +AF +   V KL+ L    I + ++ +FDS  + +   +EL +       
Sbjct: 132 KKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPENYDFDSKRIEFPKFYELIKEDFDFVP 191

Query: 189 ---VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-------ASSFASSPKRVSPAVML 238
              + Q DVAAIMYSSGTTG  KGV+LTHRNL A V       AS +       S  V L
Sbjct: 192 KPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPG---SDNVYL 248

Query: 239 FTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
             +P FHIYGL  F     +L  T VVM+RFD   M+K ++ F+VTH  V PPI++A++K
Sbjct: 249 AALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTK 308

Query: 298 GG-STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
                 G  L SL+ V+CGAAPL    I  F    P V  +Q YG+TESTA   R    +
Sbjct: 309 KAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTE 368

Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           +  ++ S G L+  ++AK+VD  TG  LPPG  GEL I+GP +MKG
Sbjct: 369 KLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKG 414

Length = 560

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  234 bits (598), Expect = 6e-72
 Identities = 113/362 (31%), Positives = 179/362 (49%), Gaps = 18/362 (4%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D  ALI    G R+++ E  RR N LA+ LQ +  +   D   +L  NS E  I + + L
Sbjct: 26  DRPALIFLGRGGRLTYRELDRRANRLAAALQAL-GVKPGDRVAILLPNSPEFLIAFLAAL 84

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEF 171
             G +  P NP  T  E++  +  +   +   ++     L  +         +L+     
Sbjct: 85  RAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDAD 144

Query: 172 DSMTMSWNSKH------ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
           D + ++  +        + D   V   D+A ++Y+SGTTG  KGV+LTHRNL A  A   
Sbjct: 145 DRLPITLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIA 204

Query: 226 ASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVM---QRFDLKMMLKAVEEFR 281
           A+    ++P  V+L  +P FHI+GL     A  L    +V+   + FD + +L  +E+++
Sbjct: 205 AALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYK 264

Query: 282 VTHAAVTPPIVVAMSKGGSTDGYDLSS-LETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340
           VT  +  P  +  +      D  DLSS L  V  G APL  + +  F  +F  + +++ Y
Sbjct: 265 VTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGY 324

Query: 341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400
           GLTE++  V      D   + GS GR   G+E +IVDP+ G+ L PG+ GE+ +RGP +M
Sbjct: 325 GLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVL-PGEVGEIWVRGPNVM 383

Query: 401 KG 402
           KG
Sbjct: 384 KG 385

Length = 534

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  234 bits (598), Expect = 8e-72
 Identities = 137/422 (32%), Positives = 196/422 (46%), Gaps = 64/422 (15%)

Query: 16  NSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEF 75
            S    F S  P I +P     +   DY     +       D   LI+  TG   ++++ 
Sbjct: 4   ASEEFIFRSKLPDIYIPNH---LPLHDYCFERLSEFS----DRPCLIDGATGRVYTYADV 56

Query: 76  TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135
              +  +A+ L  +  + + D   +L  N  E  + +      G + + ANP  T +EI+
Sbjct: 57  ELLSRRVAAGLHKLG-IRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIA 115

Query: 136 RQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPE-----FDSMTMSWNSKHELDR 186
           +Q + S   +    S  V KL  L        + ID P      F  +T +  +  EL  
Sbjct: 116 KQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFSELTQADEN--ELPE 173

Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV----------SPAV 236
            ++   DV A+ YSSGTTG  KGVMLTH+ L  +VA       ++V          S  V
Sbjct: 174 VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVA-------QQVDGENPNLYFHSDDV 226

Query: 237 MLFTMPYFHIYGL---FFC-FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV 292
           +L  +P FHIY L     C  R  A     ++M +F++  +L+ ++  +VT A   PPIV
Sbjct: 227 ILCVLPMFHIYSLNSVLLCGLRVGA---AILIMPKFEIGALLELIQRHKVTIAPFVPPIV 283

Query: 293 VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG---- 348
           +A++K    + YDLSS+  V  GAAPLGK+   AF +K P  VL Q YG+TE  AG    
Sbjct: 284 LAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTE--AGPVLA 341

Query: 349 --------VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400
                    F         + GS G +    E KIVDPETG SLP  + GE+ IRGP IM
Sbjct: 342 MCLAFAKEPFPV-------KSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIM 394

Query: 401 KG 402
           KG
Sbjct: 395 KG 396

Length = 537

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  220 bits (563), Expect = 6e-68
 Identities = 95/348 (27%), Positives = 150/348 (43%), Gaps = 19/348 (5%)

Query: 71  SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
           ++ E   R N LA+ L+ +  +   D   +L  NS E  +   ++L  G    P +P   
Sbjct: 1   TYRELDERANRLAAALRAL-GVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLP 59

Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLA------KLKHRTILIDSPEFDSMTMSWNSKHEL 184
              ++  ++ S   +      ++ KL        +    I++         +        
Sbjct: 60  AERLAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGA 119

Query: 185 DRAKVCQS----DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
                       D+A I+Y+SGTTG+ KGVMLTHRNL A  A             V+L  
Sbjct: 120 SAEPPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLL 179

Query: 241 MPYF--HIYGLFFCFRAAALMETAVVMQRFDL--KMMLKAVEEFRVTHAAVTPPIVVAMS 296
             +F   ++ +F    A     T V++ +F L    +L  +E+++VT     P ++  + 
Sbjct: 180 PLHFDGSVWEIFGPLLAGG---TLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLL 236

Query: 297 KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
           K      YDLSSL  V  G  PL  + +     +F  V LV  YG TE+T      +  D
Sbjct: 237 KAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGD 296

Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
              + GS GR   G+E K++D E    +PPG+ GEL IRGP + +G  
Sbjct: 297 PEVKPGSIGRPLPGVEVKVLDEEGEP-VPPGEVGELCIRGPGVARGYL 343

Length = 412

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  205 bits (524), Expect = 1e-61
 Identities = 111/351 (31%), Positives = 154/351 (43%), Gaps = 35/351 (9%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D  AL     G +++++E    ++  A+YLQ    + K D   ++  N  + PI YF +L
Sbjct: 14  DRPALTF--FGRKLTYAELDELSDRFAAYLQQ-LGVKKGDRVALMLPNCPQFPIAYFGIL 70

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
             G ++ P NP+ T  E+  Q+  S   +     S    LA                   
Sbjct: 71  KAGAVVVPVNPLYTPRELEHQLNDSGAKVLIVAISFEDALA------------------- 111

Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA- 235
             +        ++   D+A + Y+ GTTG  KG MLTHRNL A V    A          
Sbjct: 112 --SGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGED 169

Query: 236 VMLFTMPYFHIYGLFFC----FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPI 291
             L  +P FHI+GL        R  A   T V++  F    +LK ++ +R T     P +
Sbjct: 170 RFLTALPLFHIFGLTVNMLLGLRLGA---TNVLVPNFRPINVLKEIKRYRFTIFPGVPTL 226

Query: 292 VVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFR 351
             A+        YD SSL     G APL  +    F  K     LV+ YGLTE T+ V  
Sbjct: 227 YNALLNHPEFKKYDFSSLRLCISGGAPLPVEVAERFEEKT-GAPLVEGYGLTE-TSPVTT 284

Query: 352 TVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
               D  R+ GS G    G E KIVD E G+ LPPG+ GEL +RGP +MKG
Sbjct: 285 VNPLDGERKPGSIGLPLPGTEVKIVDDE-GNELPPGEVGELVVRGPQVMKG 334

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  199 bits (508), Expect = 1e-58
 Identities = 127/398 (31%), Positives = 198/398 (49%), Gaps = 24/398 (6%)

Query: 22  FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNS 81
           F S  P +   P+   +   D+V  L+    + D   VA + +VTG  V++ E  R T  
Sbjct: 15  FRSRYPSV-PVPDKLTLP--DFV--LQDAELYADK--VAFVEAVTGKAVTYGEVVRDTRR 67

Query: 82  LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
            A  L+++  L K     V+  N  E  I+   +++ G + S ANP   ESEI +Q + +
Sbjct: 68  FAKALRSLG-LRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAEAA 126

Query: 142 NPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWN--------SKHELDRAKVCQSD 193
              +     +   K+  L    I++   E     ++W         +    D  ++ Q+D
Sbjct: 127 GAKLIVTNDTNYGKVKGLGLPVIVL-GEEKIEGAVNWKELLEAADRAGDTSDNEEILQTD 185

Query: 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLFTMPYFHIYGLF-F 251
           + A+ +SSGTTG  KGVMLTHRNL A + SS F+  P+ +   V L  +P+FHIYG+   
Sbjct: 186 LCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGI 245

Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS--SL 309
           C          VVM RF+L+  L A+    V+ A + PPI++ + K    + +DLS   L
Sbjct: 246 CCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKL 305

Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR---RWGSTGR 366
           + +   AAPL  + + AF +KFP V + +AYGLTE +        P++     +  S G 
Sbjct: 306 QAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGF 365

Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
           +   LE K +DP+TG SLP    GEL +R   +M+G +
Sbjct: 366 ILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYY 403

Length = 546

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  187 bits (477), Expect = 3e-54
 Identities = 112/367 (30%), Positives = 166/367 (45%), Gaps = 44/367 (11%)

Query: 66  TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPA 125
            G R +++E   R N LA+ L+ +  + K D   V   NS E    YF++  +G +    
Sbjct: 28  DGRRTTYAELDERVNRLANALRALG-VKKGDRVAVFDWNSHEYLEAYFAVPKIGAV---L 83

Query: 126 NPVNT---ESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFDSMTMS 177
           +P+N      EI+  +  +   +    S  V  LA +       RT++++          
Sbjct: 84  HPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGD--GPAAPL 141

Query: 178 WNSKHELDRAKVCQS-----------DVAAIMYSSGTTGRVKGVMLTHRNL---TAAVAS 223
                E +      S           D AA++Y+SGTTG  KGV+L+HRNL   + AV +
Sbjct: 142 APEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCA 201

Query: 224 SFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVT 283
               S   V     L  +P FH++     + A       V+ +RFD + +L  +E  RVT
Sbjct: 202 WLKLSRDDVY----LVIVPMFHVHAWGLPYLALMAGAKQVIPRRFDPENLLDLIETERVT 257

Query: 284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
                P I   + K       D SSL  V  G A L    +  F  KF  + LVQ YG+T
Sbjct: 258 FFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGYGMT 316

Query: 344 ESTAGVFRTVGP------DECRRWGSTGRLSAGLEAKIVDPETGDSLPP-GKE-GELSIR 395
           E T+ V  +V P       +  +  S GR   G+EA+IVD + GD LPP G E GE+ +R
Sbjct: 317 E-TSPVV-SVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDD-GDELPPDGGEVGEIIVR 373

Query: 396 GPTIMKG 402
           GP +M+G
Sbjct: 374 GPWLMQG 380

Length = 521

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  184 bits (469), Expect = 7e-54
 Identities = 102/338 (30%), Positives = 153/338 (45%), Gaps = 51/338 (15%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
            ++++E     + LA  LQ    + K D   +   NS +  I Y+++L  G ++ P NP+
Sbjct: 1   VITYAELLELVDRLAGLLQEKG-VRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPM 59

Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
           N E+E+   +  S   +    S                                ELD   
Sbjct: 60  NREAELEHILNDSGARVLIVGS--------------------------------ELD--- 84

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
               DVA I Y+SGTTG  KG M THR + A  A+S A S       V+L  +P FH+ G
Sbjct: 85  ----DVAVIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDS-VLLAFLPLFHVAG 139

Query: 249 LFFCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
           +     A      T V++ R+D +   +A+E +RVTH      +VV +        YDLS
Sbjct: 140 MQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFADYDLS 199

Query: 308 SLETVACGAAPLGKDTIMAFASKFPK---VVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
           SL+ V  G A L      A A +      ++  + YGLTE+         P +  +    
Sbjct: 200 SLKVVGGGGAALPP----AVAERLKALTGLLYEEGYGLTETHTCT--HFNPPDRPKPQCL 253

Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           G    G +A+++DPETG+ LPPG+EGE+ +RGP + KG
Sbjct: 254 GIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKG 291

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  180 bits (459), Expect = 2e-53
 Identities = 84/213 (39%), Positives = 112/213 (52%), Gaps = 7/213 (3%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251
            D A I+Y+SGTTGR KGVMLTHRNL A   +   +        V L   P +H  G  F
Sbjct: 1   DDPALILYTSGTTGRPKGVMLTHRNLLANAVN-ALAGVDLSPGDVYLLAAPLYHAAGGLF 59

Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
              A A   T V+M +FD + +L  +E  RVTH  + P +   + +      YDLSSL  
Sbjct: 60  LLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSSLRL 119

Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC--RRWGSTGRLSA 369
           +  GAAP+  +   A    F   V VQ YG+TE+      T+   E   R+ GS GR   
Sbjct: 120 IIYGAAPMPAELKRAMIEWFG-PVFVQGYGMTETGPTT--TLLSPEDWLRKLGSVGRPVP 176

Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           G+E +IVD + G  LPPG+ GE+ +RGP +M G
Sbjct: 177 GVEVRIVDED-GRELPPGEVGEIVVRGPAVMAG 208

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  180 bits (458), Expect = 4e-53
 Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 4/212 (1%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252
           D A I Y+SGTTGR KG MLTHRN+      S A           L  +P FH++GL   
Sbjct: 3   DPALIQYTSGTTGRPKGAMLTHRNVLNN-GYSIARRLGLTEGDRTLVPVPLFHVFGLVLG 61

Query: 253 FRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
             A+     T V+M++FD    L+ +E  R+T     P + +A+ +    D +DLSSL T
Sbjct: 62  VLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLRT 121

Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW-GSTGRLSAG 370
              G AP+  + +     +FP   +   YG+TE++    +T G D      G+ GR   G
Sbjct: 122 GISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPG 181

Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           +E KIVDP+ G+ +PPG+ GE+ +RG ++MKG
Sbjct: 182 VEVKIVDPDGGE-VPPGEVGEICVRGYSVMKG 212

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  158 bits (403), Expect = 3e-45
 Identities = 77/212 (36%), Positives = 113/212 (53%), Gaps = 6/212 (2%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252
           D A I+Y+SGTTG+ KGV+L+HRNL A   +   +        V+L  +P FH+ G    
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGD-VLLSVLPLFHVVGGGSG 59

Query: 253 -FRAAALMETAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLE 310
              A     T V+ + F      L+ +E++RVT     P +  A++K     GYDLSSL 
Sbjct: 60  LLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSSLR 119

Query: 311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAG 370
            +  G  PL  + +     + P   +++ YGLTE T+ V  T    E ++ G+ GR   G
Sbjct: 120 LLISGGEPLSPELL-ERFEERPGAPILEGYGLTE-TSVVTSTNPDSELKKPGTVGRPVPG 177

Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           +E ++VD E    LPPG+ GEL +RGP +MKG
Sbjct: 178 VEVRVVDEEGKP-LPPGEVGELVVRGPWVMKG 208

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  162 bits (411), Expect = 1e-44
 Identities = 102/375 (27%), Positives = 162/375 (43%), Gaps = 49/375 (13%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
           G  +S+ E       LA YLQ    + K D   +   NS +  I Y+++L    ++ P N
Sbjct: 33  GRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQNSPQFVIAYYAILRANAVVVPVN 92

Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTIL-----------------IDSP 169
           P+N E E++  +  S   +A   S +  K+A       L                 I  P
Sbjct: 93  PMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVP 152

Query: 170 EF-----------DSMTMSWN----SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH 214
            +               ++W     +            D+A + Y+SGTTG  KG M TH
Sbjct: 153 AWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDLAVLPYTSGTTGVPKGCMHTH 212

Query: 215 RNLTAAVASS---FASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFDL 270
           R + A    S     S+P+    +V+L  +P FH+ G+     A      T V+M R+D 
Sbjct: 213 RTVMANAVGSVLWSNSTPE----SVVLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDR 268

Query: 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330
           +   + +E +RVTH    P +VV           DLSSL  +  G A + +    A A +
Sbjct: 269 EAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPE----AVAER 324

Query: 331 FPK---VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG 387
             +   +  V+ YGLTE+ A       P +  +    G  + G++A+++DPET + LPPG
Sbjct: 325 LKELTGLDYVEGYGLTETMA--QTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPG 382

Query: 388 KEGELSIRGPTIMKG 402
           + GE+ + GP + KG
Sbjct: 383 EVGEIVVHGPQVFKG 397

Length = 546

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  154 bits (392), Expect = 1e-42
 Identities = 99/344 (28%), Positives = 143/344 (41%), Gaps = 53/344 (15%)

Query: 69  RVSFSEFTRRTNSLASYL--QNVTRLSKNDT-AFVLSTNSIEIPILYFSLLSLGVIISPA 125
           R+++ E     + LA+ L    V      D  AF L  N  E  ++Y +   +G +I+P 
Sbjct: 1   RLTYGELDDAADRLAAALAELGVRP---GDVVAFQL-PNWWEFVVVYLACARIGAVINPI 56

Query: 126 NPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELD 185
            P+  E E+   ++ +   + F              R        FD   M         
Sbjct: 57  VPIYRERELGFILRQARARVLFVPDEF---------RG-------FDYAAMP-------- 92

Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFTMP 242
                  DVA ++Y+SGTTG  KGVM TH  L A V S       +P  V    M   + 
Sbjct: 93  ------DDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVL--MPSPLA 144

Query: 243 YFHI----YGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
             HI    YGL       A   T V+  R+D    L+ + E  VT      P +  +   
Sbjct: 145 --HITGFLYGLELPLLLGA---TVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAA 199

Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358
               G DL SL    CG AP+ ++     A      V V+AYG+TE       T    + 
Sbjct: 200 ADAAGPDLPSLRVFLCGGAPVPRELARRAAEALGAKV-VRAYGMTEVPLVTVGTPDDPDD 258

Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           +R  + GR   G+E +IVD + G+ +PPG+EGEL +RGP +  G
Sbjct: 259 KRAATDGRPVPGVEVRIVDDD-GNDVPPGEEGELQVRGPQLFLG 301

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  142 bits (360), Expect = 7e-38
 Identities = 88/343 (25%), Positives = 133/343 (38%), Gaps = 39/343 (11%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
           R+++ E     + LA+ L  +  +   D   V   N  E  ILYF+L  LG I   A P 
Sbjct: 40  RLTYRELDAAVDRLAAGLLALG-IGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPA 98

Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
           +   EI    + S    A+  +                    FD   ++     EL    
Sbjct: 99  HRAHEIGHFARQSEAK-AYIIADRFSG---------------FDYAALARELLEEL---- 138

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIY 247
               DVA    S GTTG  K +  TH +   +  +S  +    + P  V L  +P  H +
Sbjct: 139 ---PDVALFQLSGGTTGLPKLIPRTHNDYLYSARASAEAC--GLDPGTVYLAVLPAAHNF 193

Query: 248 -----GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD 302
                GL     A     T V+       +    +E  +VTH A+ P ++    +    D
Sbjct: 194 TLSSPGLLGALLAGG---TVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWD 250

Query: 303 GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWG 362
             DLSSL  +  G APL    +     +     L Q +G+ E      R   P +     
Sbjct: 251 QADLSSLRVIQVGGAPL-SPELARRVEERLGCPLQQVFGMAEGLVNYTRLDDPPDVIM-R 308

Query: 363 STGR-LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
           + GR +S   E +IVD +    +PPG+ GEL  RGP  ++G +
Sbjct: 309 TQGRPISPADEIRIVDDQGEP-VPPGEVGELLTRGPYTIRGYY 350

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  142 bits (361), Expect = 9e-38
 Identities = 100/361 (27%), Positives = 161/361 (44%), Gaps = 33/361 (9%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
             R++++E   R    A+ L  +  + K D   + + NS    I     L  G ++ P N
Sbjct: 28  DQRLTYAELNARVRRAAAALAALG-IGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLN 86

Query: 127 PVNTESEISRQIQLSNPVIAFATS-------SVVHKLAKLKHRTIL--IDSPEFDSMTMS 177
              T  E +  +   +    F          S   +L  L+H  I    +         +
Sbjct: 87  TRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKT 146

Query: 178 W----NSKHELDRA-KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV 232
           +     +    +RA +V   DVA I+++SGTTGR KG MLTHR L +  A+ +A      
Sbjct: 147 FTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSN-AADWAEYLGLT 205

Query: 233 SPAVMLFTMPYFHIYGLFFCFRA---AALME--TAVVMQRFDLKMMLKAVEEFRVTHAAV 287
                L   P+FH+    F ++A   A LM   T + +  FD   + + +E  R+T    
Sbjct: 206 EGDRYLAANPFFHV----FGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPG 261

Query: 288 TPPIVVAM--SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
            P +  ++      S    DLSSL     GAA +    +  F S+    +++  YGL+E+
Sbjct: 262 PPTMYNSLLQHPDRSA--EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEA 319

Query: 346 TAGVFRTVGPDECRRW--GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGI 403
            +GV      D+ R+   G+ G   AG+E KIV+   G+ +P G+ GEL +RGP +MKG 
Sbjct: 320 -SGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNEL-GEEVPVGEVGELLVRGPNVMKGY 377

Query: 404 F 404
           +
Sbjct: 378 Y 378

Length = 513

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  141 bits (357), Expect = 4e-37
 Identities = 110/376 (29%), Positives = 174/376 (46%), Gaps = 46/376 (12%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
           G  ++FS F  +    A+YLQ +  + K D   ++  N  +  I Y+  L  G I+   N
Sbjct: 47  GKDITFSVFHDKVKRFANYLQKLG-VEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTN 105

Query: 127 PVNTESEISRQIQLSNPVI------AFATSSVVHKLAKLKH------------------- 161
           P+ TE E+  Q+  S   +       F   + V    K++H                   
Sbjct: 106 PLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYP 165

Query: 162 -----RTILIDSPEFDSMTMSWNS-KHELDRA--KVC--QSDVAAIMYSSGTTGRVKGVM 211
                ++ L+           WNS + E++      C  ++D+A + Y+ GTTG  KGVM
Sbjct: 166 FVQKKQSNLVVKVSESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVM 225

Query: 212 LTHRNLTAAVASSFASSPKRVS-PAVMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFD 269
           LTH+NL +                 V+L  +P+FH+YG+      + +     V++ +FD
Sbjct: 226 LTHKNLVSNTLMGVQWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFD 285

Query: 270 LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFAS 329
           +KM+ +A+++ +VT     P I +A+        YD+SS+     G+APL  +       
Sbjct: 286 MKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEV----QE 341

Query: 330 KFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP 386
           KF  V    LV+ YGLTES+  V  +    E R  GS G      EA I+  ETG++LPP
Sbjct: 342 KFETVTGGKLVEGYGLTESSP-VTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPP 400

Query: 387 GKEGELSIRGPTIMKG 402
           G+ GE+ ++GP IMKG
Sbjct: 401 GEIGEIVVKGPQIMKG 416

Length = 563

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  136 bits (344), Expect = 1e-36
 Identities = 74/216 (34%), Positives = 104/216 (48%), Gaps = 12/216 (5%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG--- 248
            D+AAI+Y+SG+TG  KGVML+HRNLTA  A S A   +      +L  +P+   YG   
Sbjct: 2   DDLAAIIYTSGSTGEPKGVMLSHRNLTAG-ARSIAQYLELTEDDRILAVLPFSFDYGLSQ 60

Query: 249 LFFCFRAAALMETAVVMQRFDL-KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
           L   FR      T V+  RF   + +LK + + R+T  A  P     + +       D  
Sbjct: 61  LLTAFRVGG---TLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLAREDFP 117

Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC-RRWGSTGR 366
           SL  +      L   TI+     FP   L   YGLTE+    +  + P+E  RR  S G+
Sbjct: 118 SLRYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRSTY--LPPEELDRRPDSIGK 175

Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
               +E  +VD + G+   PG+ GEL  RG  +MKG
Sbjct: 176 AIPNVELWVVDED-GNRCAPGEVGELVHRGANVMKG 210

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  135 bits (342), Expect = 2e-36
 Identities = 74/221 (33%), Positives = 108/221 (48%), Gaps = 22/221 (9%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAA---VASSFASSPKRVSPAVMLFTMPYFHIYG 248
            D A I+++SGTTGR KGV LTH+NL A+   +A S   +P      V    MP FHI+G
Sbjct: 2   DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNV----MPLFHIHG 57

Query: 249 LFFCFRAAALMET------AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD 302
           L       +L+ T       V   +F        + ++RVT  +  P I   + K    +
Sbjct: 58  L-----IVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPN 112

Query: 303 GYD-LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW 361
                  L  +   +APL    +     +F  V +++AYG+TE+   +     P   R+ 
Sbjct: 113 PGKPPPRLRFIRSASAPLPPAVLDRLEKRF-GVPVLEAYGMTEAAHQIASNPLPPLVRKP 171

Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           GS GR  AG+E  I+D + G  LPPG+EGE+ IRGP +  G
Sbjct: 172 GSVGR-PAGVEVAILDDD-GRPLPPGQEGEIVIRGPNVTAG 210

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  137 bits (347), Expect = 2e-35
 Identities = 89/408 (21%), Positives = 152/408 (37%), Gaps = 95/408 (23%)

Query: 70  VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
           +++ E   R  +LAS L +   +   D   + + N  E  I   ++L+LG +  P    +
Sbjct: 46  ITYRELYERVRALASGLLS-LGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTS 104

Query: 130 TESEISRQIQLSNPVIAFA-TSSVVHKLAKLKHRTILI-----------DSPEFDSMTMS 177
           T  +++  +  S   + F     ++  +  +      +           ++ E  ++ + 
Sbjct: 105 TPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLE 164

Query: 178 WNSK-----HELDRAKVCQS-------DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
                      +D A +          D+A I+Y+SGTTG  KGVMLTHRNL A VA   
Sbjct: 165 VFPDEGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGID 224

Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
              P       +L  +P  HI+   F     AL     V+ + D + +L+ ++E R T  
Sbjct: 225 EVLPPIGPGDRVLSFLPLAHIFERAFEG-GLALYGGVTVLFKEDPRTLLEDLKEVRPTVM 283

Query: 286 AVTPPI------------------------------VVAMSKGGSTDGYDL--------- 306
              P +                                 +S+     G            
Sbjct: 284 IGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLV 343

Query: 307 ---------SSLETVACGAAPLGKDTIMAFASKFPKVVLV---QAYGLTESTAGVFRTVG 354
                      +     G APL  + +  F S     + +   + YGLTE++A V  +V 
Sbjct: 344 FRKIRDALGGRIRYALSGGAPLSPELLHFFRS-----LGIPILEGYGLTETSAVV--SVN 396

Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           P +    G+ G+   G+E KI D           +GE+ +RGP +MKG
Sbjct: 397 PPDRFVLGTVGKPLPGIEVKIAD-----------DGEILVRGPNVMKG 433

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  134 bits (339), Expect = 5e-35
 Identities = 81/348 (23%), Positives = 135/348 (38%), Gaps = 71/348 (20%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
            ++++E   R   LA+ L  +  +   D   +L+ N  E  I   ++L+ G +  P  P 
Sbjct: 5   TITWAELAERVRRLAAGLIALG-VKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPT 63

Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
           ++  E++  +  S   + F                   D P+                  
Sbjct: 64  SSPEEVAYILNDSGARVVFVE-----------------DKPD------------------ 88

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
               D+A ++Y+SGTTG  KGVMLTHRNL A  A+     P      V+ F +P  H++ 
Sbjct: 89  ----DLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSF-LPLAHVFE 143

Query: 249 LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTP--------PIVVAMSKGGS 300
                    L   A V      + +L+ + E R T     P         I   ++  G 
Sbjct: 144 QRLGE-YLPLSSGARVNFAESPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAKVAAAGP 202

Query: 301 TDG--YD----LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
                +        L     G APL  + +  F +    + +++ YGLTE++     TV 
Sbjct: 203 LKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFFRAL--GIPILEGYGLTETSGVA--TVN 258

Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
                R G+ G+   G+E +I +           +GE+ +RGP +MKG
Sbjct: 259 RPGDIRIGTVGKPLPGVEVRIAE-----------DGEILVRGPNVMKG 295

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  134 bits (339), Expect = 9e-35
 Identities = 78/370 (21%), Positives = 141/370 (38%), Gaps = 37/370 (10%)

Query: 51  LPWRDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107
           L     D  A+I          +++ +  R    LA+ L++     K D   +   NS E
Sbjct: 19  LEADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKD-LGGVKGDRVAIYMPNSPE 77

Query: 108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS---------VVHKLAK 158
             I   +   +G I +  +P  +   ++ +I    P +  A            ++     
Sbjct: 78  AVIALLATARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADA 137

Query: 159 LKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT 218
           +    +++             +  + +   +   D   ++Y+SGTTG+ KG++ +H    
Sbjct: 138 VLSSVVVVPRLGLWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYL 197

Query: 219 AAVASSFASSPKRV---SPAVMLFTMP-----YFHIYGLFFCFRAAALMETAVVMQR--- 267
                +     K      P    +        Y   Y +F    + A   T V+      
Sbjct: 198 VEHRLTA----KFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGA---TTVLYDGRPF 250

Query: 268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAF 327
           +  + + +A+E+++VT    +P  +  + K G  + YDLSSL  +     PL  +    F
Sbjct: 251 YSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWF 310

Query: 328 ASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG 387
            S    V ++  YG TE+  G     G    +  GS+G    G   + VD E G+ +PPG
Sbjct: 311 YSAL-GVWILDIYGQTETGMGFI--AGRPPVKN-GSSGLPLPGYAVRRVDDE-GNPVPPG 365

Query: 388 KEGELSIRGP 397
             GEL +R P
Sbjct: 366 -VGELVVRLP 374

Length = 528

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  126 bits (319), Expect = 2e-32
 Identities = 87/341 (25%), Positives = 130/341 (38%), Gaps = 59/341 (17%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
           R +++E   R N LA+ L  +  +   D   ++  N  E    +F+L  LG +  P N  
Sbjct: 3   RYTYAELAERVNRLAAGLLALG-VRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTA 61

Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
               E++  +  S   +                                           
Sbjct: 62  LRGEELAHILDHSGARLIVV---------------------------------------- 81

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
               D AAI+Y+SGTTG  KGV+LTH  L  A   +      R    V+L  +P FHI  
Sbjct: 82  ----DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARLLGLR-PDDVLLTPLPLFHINA 136

Query: 249 LFFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
             +    AAL+   T V++ RF        V +   T   +   +   + K       D 
Sbjct: 137 QAYSV-YAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMK--QPPSPDD 193

Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR 366
                     APL      AF  +F  V LV+ YG+TE+   +     P +    GS GR
Sbjct: 194 RDHPLRFVFGAPLPAAIWPAFEERF-GVKLVEGYGMTETGVPII---APGDPAPPGSCGR 249

Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIR---GPTIMKGIF 404
              G+E +IVD + G  +PPG+ GEL +R      + KG +
Sbjct: 250 PRPGVEVRIVDED-GREVPPGEVGELVVRPRRPWAMFKGYY 289

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  126 bits (318), Expect = 3e-32
 Identities = 88/360 (24%), Positives = 140/360 (38%), Gaps = 76/360 (21%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D +AL++   G  +++ E   R+  LA  L  +  L   D   VL+  S E  +LY ++ 
Sbjct: 1   DRIALVDG--GRSLTYGELDARSGRLAKALLALGLL-PGDRVAVLAPKSAEYVVLYLAIW 57

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
             G +  P NP    +E++  +  S P +                               
Sbjct: 58  RAGGVAVPLNPSYPAAELAYILSDSQPSLLV----------------------------- 88

Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-----SFASSPKR 231
                           D A I+Y+SGTTGR KGV+LTH NL A   +      + +S   
Sbjct: 89  ----------------DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRWTASD-- 130

Query: 232 VSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPP 290
               V+L  +P  H++GLF           +V    RFD +         R+T     P 
Sbjct: 131 ----VLLHALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQERDALRLLPRITVFMGVPT 186

Query: 291 IVVAMSKGGSTDGYDLSSLETVAC--------GAAPLGKDTIMAFASKFPKVVLVQAYGL 342
           I   +      + Y+       A         G+A L    +  +  +    +L + YG+
Sbjct: 187 IYTRL-----LEHYEFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTGHTLL-ERYGM 240

Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           TE   G+  +   D  RR G+ G    G+E +IVD + G+ L  G+ GE+ +RGP +   
Sbjct: 241 TE--TGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSE 298

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  125 bits (315), Expect = 1e-31
 Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 14/224 (6%)

Query: 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFT 240
           L  A     D A I+++SG+ G  KGV+L+HRNL A    +A+    + + V    +L  
Sbjct: 137 LFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDV----LLGA 192

Query: 241 MPYFHIYGLFFCFRAAALMETAVVMQR--FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
           +P FH +GL        L    VV      D K + + + +++ T    TP  +   ++ 
Sbjct: 193 LPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLRGYAR- 251

Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC 358
            +    D SSL  V  GA  L + T   F  KF  + +++ YG TE +  +  +V     
Sbjct: 252 -NAHPEDFSSLRLVVAGAEKLPEATRELFEEKF-GIRILEGYGATECSPVI--SVNTPMG 307

Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            + G+ GR   G+E +IV PET + LP G+ G L +RGP +M G
Sbjct: 308 NKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSG 351

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score =  125 bits (317), Expect = 1e-31
 Identities = 99/390 (25%), Positives = 149/390 (38%), Gaps = 73/390 (18%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
            ++++E  RR  ++A+ LQ     +  D   +L+   ++    +F  L  G I  PA P 
Sbjct: 23  TLTYAELDRRARAIAARLQ--ALGAPGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPP 80

Query: 129 NTESEISRQIQL----SNPVIAFATSSVVHKLAK-------LKHRTILIDSPEFDSMTMS 177
                   ++      +       TS+V+  L         L    I  D     +    
Sbjct: 81  RRLGRHLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAADDLAALA---- 136

Query: 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSP 234
                +         D+A + Y+SG+TG  KGVM+TH NL A   A+A +F   P     
Sbjct: 137 ---AADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAIARAFGLDP----D 189

Query: 235 AVMLFTMPYFH----IYGLFFCF---RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
            V +  +P +H    I GL           LM     ++R      L+A+  +R T +  
Sbjct: 190 DVGVSWLPLYHDMGLIGGLLQPLYAGFPVVLMSPLAFLRRPLR--WLEAISRYRATVSGA 247

Query: 288 TPP----IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF------PKVVLV 337
            P     + V   +     G DLSS      GA P+  DT+  FA +F      P+  L 
Sbjct: 248 -PNFAYDLCVRRVRDEQLAGLDLSSWRVAFNGAEPVRADTLERFAERFAPAGFRPEAFL- 305

Query: 338 QAYGLTESTAGV--------FRTVGPDECRRWG-----------------STGRLSAGLE 372
             YGL E+T  V           +  D                       S GR   G E
Sbjct: 306 PCYGLAEATLAVSGGPPGAGPVVLRVDRDALARGGAAVAAADGAAARELVSCGRPLPGHE 365

Query: 373 AKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            +IVDPET   LP G+ GE+ +RGP++  G
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAG 395

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  123 bits (311), Expect = 4e-31
 Identities = 86/353 (24%), Positives = 161/353 (45%), Gaps = 14/353 (3%)

Query: 53  WRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112
           +   D +A+I     +  ++ +     + +A+YL     + K +   +LS NS+E  +L 
Sbjct: 13  YLHPDRIAIITEEEEM--TYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLL 70

Query: 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFD 172
           F++  +  I  P N   TE+E+  Q++ S   + F   +  +    ++  + +       
Sbjct: 71  FAIAKVECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYV--QRVIS 128

Query: 173 SMTMSWNSKHELDRA-KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT-AAVASSFASSPK 230
             ++      ++D   +  +S    I Y+SGTTG+ KG +LT  N+   A+ ++FA    
Sbjct: 129 ITSLKEIEDRKIDNFVEKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLT 188

Query: 231 RVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTP 289
               +++L  +P FHI G+  F F         +V ++F+    L  +E+ +VT     P
Sbjct: 189 MHDRSIVL--LPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVP 246

Query: 290 PIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTESTAG 348
            I  A+      +  +L S+     G AP  ++ +  F  + F      Q +G+TE++  
Sbjct: 247 TIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDRGFL---FGQGFGMTETSPT 303

Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401
           VF     D  R+ GS G+     + +++D      +  G+ GEL IRGP +MK
Sbjct: 304 VFMLSEEDARRKVGSIGKPVLFCDYELIDENKNK-VEVGEVGELLIRGPNVMK 355

Length = 496

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  121 bits (306), Expect = 3e-30
 Identities = 90/372 (24%), Positives = 159/372 (42%), Gaps = 37/372 (9%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D +A++++  G   ++S      + LA++L        +  AF L     E  I+Y + L
Sbjct: 38  DKIAVVDN-HGASYTYSALDHAASRLANWLLAKGIEPGDRVAFQLPGWC-EFTIIYLACL 95

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATS------------SVVHKLAKLKHRTI 164
            +G +  P  P   E+E+   +      + FA +             + ++L +L+   +
Sbjct: 96  KVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQ-IV 154

Query: 165 LID--SPEFDSMTMSWNSKHELDRAKVCQS-------DVAAIMYSSGTTGRVKGVMLTHR 215
            +D  +P   S+++S      +   +   +       ++AA++++SGT G  KGVMLTH 
Sbjct: 155 GVDKLAPATSSLSLS----QIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHN 210

Query: 216 NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFDLKMML 274
           N+ A+   ++ +        V +   P  H  G      A  L+   +V++  F     L
Sbjct: 211 NILAS-ERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACL 269

Query: 275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKV 334
             +E+ R T      P +  +         DLS+L    CG   + K   +A   +   +
Sbjct: 270 ALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKK--VARECQQRGI 327

Query: 335 VLVQAYGLTESTAGVFRTVGPDECRRW--GSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
            L+  YG TES+      V  D+       + G  +AG+E K+VD E   +LPPG EGE 
Sbjct: 328 KLLSVYGSTESSPHAV--VNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEE 384

Query: 393 SIRGPTIMKGIF 404
           + RGP +  G  
Sbjct: 385 ASRGPNVFMGYL 396

Length = 547

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  121 bits (305), Expect = 5e-30
 Identities = 96/335 (28%), Positives = 145/335 (43%), Gaps = 47/335 (14%)

Query: 112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFA---TSSVVHKLAK-LKHRTI--- 164
           ++++L LG ++   NP+ T  E+    +     +A      +  V +L +     TI   
Sbjct: 99  FYAVLRLGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSV 158

Query: 165 -LIDS-------------PEFDSM----------TMSWNS---------KHELDRAKVCQ 191
            +I +             P               T+ W +           ++   +   
Sbjct: 159 NMIAAMPLLQRLALRLPIPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTP 218

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAVMLFTMPYFHIYGLF 250
            DVA I+Y+SGTTG+ KG  LTHRNL A  A   A  P     P  +L  +P FH YGL 
Sbjct: 219 DDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLT 278

Query: 251 FCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
            C   A  +    V++   D+ ++L A+++   T     PP+   +++     G DLS +
Sbjct: 279 LCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGV 338

Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPDECRRWGSTGRLS 368
                GA  L   T+     K    +LV+ YGLTE S   V   +  D  RR G  G   
Sbjct: 339 RNAFSGAMALPVSTV-ELWEKLTGGLLVEGYGLTETSPIIVGNPMSDD--RRPGYVGVPF 395

Query: 369 AGLEAKIVDPETGD-SLPPGKEGELSIRGPTIMKG 402
              E +IVDPE  D ++P G+EGEL +RGP + KG
Sbjct: 396 PDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKG 430

Length = 573

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  119 bits (300), Expect = 6e-30
 Identities = 86/337 (25%), Positives = 144/337 (42%), Gaps = 67/337 (19%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
            ++F E  +R + LA  L  +  + + D   +L+ NSIE  +L+ +LL LG ++ P NP 
Sbjct: 1   SLTFQELDQRVSQLAEQLAALG-VRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPR 59

Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
             + E+ +Q                                              L   +
Sbjct: 60  LPQEELQQQ----------------------------------------------LADLQ 73

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVM-LFTMPYFHIY 247
                 A I+++SG+TG+ K V+ T  N  A+   S  +    ++P    L ++P FH+ 
Sbjct: 74  PDLDRPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENLG--LTPDDNWLLSLPLFHVS 131

Query: 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
           GL    R+       V+  +FD + + +A+E   VTH ++ P  +  + +  S     LS
Sbjct: 132 GLAIVMRSLLAGGALVLPDKFDAEAIAEALENHGVTHISLVPTQLQRLLE--SLGARWLS 189

Query: 308 SLETVACGAAPLGKDTI-MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR-WGSTG 365
           SL  V  G AP+    +  A     P   L   YG+TE+ + V  T+ PD+     GS G
Sbjct: 190 SLRAVLLGGAPIPPSLLEQARQRGIP---LYPTYGMTETASQVA-TLKPDDFLAKLGSVG 245

Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           +   G E +IV+P+          GE+ +RGP++  G
Sbjct: 246 KPLPGRELRIVNPQD---------GEILVRGPSLFLG 273

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  117 bits (294), Expect = 8e-29
 Identities = 104/378 (27%), Positives = 164/378 (43%), Gaps = 43/378 (11%)

Query: 46  SLRATLPW---RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLS 102
           +L A++ +   R  D  AL+       +S++EF +R    A  L     + + D   +L 
Sbjct: 3   NLSASIAFHARRTPDRAALV--YRDQEISYAEFHQRILQAAGMLH-ARGIGQGDVVALLM 59

Query: 103 TNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------ 156
            NS     L F+   LG +  P N            +L+   +A+       KL      
Sbjct: 60  KNSAAFLELAFAASYLGAVFLPIN-----------YRLAADEVAYILGDAGAKLLLVDEE 108

Query: 157 ----AKLKHRTILIDSP-EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVM 211
                 L+   I+ID+  + DS  ++        +A V  +D+  +MY+SGTT R KGVM
Sbjct: 109 FDAIVALETPKIVIDAAAQADSRRLAQGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVM 168

Query: 212 LTHRNLT-----AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME--TAVV 264
            ++ NL        +A    +S +      +L   P +H+ G F     A L    T  +
Sbjct: 169 HSYGNLHWKSIDHVIALGLTASER------LLVVGPLYHV-GAFDLPGIAVLWVGGTLRI 221

Query: 265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI 324
            + FD + +L A+E  R+T A + P ++  +      D +DL SL     G     +  I
Sbjct: 222 HREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRI 281

Query: 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSL 384
             F   F +   + AYGLTE+ +G        E  + GSTGR  A +E +I D   G  L
Sbjct: 282 RDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIAD-GAGRWL 340

Query: 385 PPGKEGELSIRGPTIMKG 402
           PP  +GE+ +RGP + KG
Sbjct: 341 PPNMKGEICMRGPKVTKG 358

Length = 497

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  116 bits (292), Expect = 2e-28
 Identities = 100/373 (26%), Positives = 144/373 (38%), Gaps = 50/373 (13%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
             R ++ E   R   LAS L  +  + K D   VL+ N+  +   +F +   G ++    
Sbjct: 27  DRRYTYRETYDRCRRLASALSKLG-IGKGDVVAVLAPNTPAMLEAHFGVPMAGAVL---V 82

Query: 127 PVNT---ESEISRQIQLSNPVIAFA----TSSVVHKLAKLKHRTILIDSPEFDSMTMSW- 178
           P+NT     +I+  +  S   + F      S     LA L  + I+       S      
Sbjct: 83  PLNTRLDADDIAFILNHSEAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDS 142

Query: 179 -----------NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN--LTAAVASSF 225
                           L      + D  ++ Y+SGTTG  KGV+ THR   L A      
Sbjct: 143 EEGDYEDLLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIE 202

Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
              P R    V L+T+P FH  G  F +   A+  T V +++ D   +   +E+ +VTH 
Sbjct: 203 WGMPDR---PVYLWTLPMFHCNGWCFPWAITAVGGTHVCLRKVDAPAIYDLIEKHKVTHL 259

Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
              P ++  ++     D   L     V    AP     I        +V     YGLTE 
Sbjct: 260 CGAPTVLNMLANAPEADKLPLPRPVRVMTAGAPPPPAVIKKMEELGFEV--THVYGLTE- 316

Query: 346 TAGVFRTV---------GPDECR-----RWGSTGRLSAGLEAKIVDPETGDSLPP-GKE- 389
           T G   TV          P E R     R G   R     E  +VDPET   +P  GK  
Sbjct: 317 TYGPI-TVCEWKPEWDALPAEERARLKARQGV--RYVGLEEVDVVDPETMKDVPRDGKTI 373

Query: 390 GELSIRGPTIMKG 402
           GE+ +RG T+MKG
Sbjct: 374 GEIVMRGNTVMKG 386

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  112 bits (283), Expect = 4e-27
 Identities = 96/369 (26%), Positives = 154/369 (41%), Gaps = 27/369 (7%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D  AL+        +++E     N +A+ L +   L K D    L  NS    +L+ 
Sbjct: 23  RYPDKTALVFG--DRSWTYAELDAAVNRVAAALLD-LGLKKGDRVAALGHNSDAYALLWL 79

Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS----VVHKLAKLKH-RTILIDS 168
           +    G +  P N + T  E++  +  S         +        LA L     IL   
Sbjct: 80  ACARAGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLV 139

Query: 169 PEFDSMTMSWNSKHEL--------DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
                    W    +            ++   D+A I+Y+SGT    KG MLTHR L A 
Sbjct: 140 LGGREAPGGWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAE 199

Query: 221 VASSFASSPKRVSPA-VMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVE 278
             S   +    +S   + L  +P +H   L  F      +  T V++   D +++L+ +E
Sbjct: 200 YVSCIVAG--DMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIE 257

Query: 279 EFRVTHAAVTPPIV-VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
             R+T +   PP V +++ +    D  DLSSL     GA+ +  + +     + P +   
Sbjct: 258 AERIT-SFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFY 316

Query: 338 QAYGLTESTAGVFRTV-GPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395
             YG TE       TV GP+E  RR GS GR    +E ++VD + G+ + PG+ GE+  R
Sbjct: 317 NCYGQTE--IAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHR 373

Query: 396 GPTIMKGIF 404
            P +M G +
Sbjct: 374 SPQLMLGYW 382

Length = 523

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  111 bits (280), Expect = 1e-26
 Identities = 73/226 (32%), Positives = 107/226 (47%), Gaps = 18/226 (7%)

Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPY 243
            A     D+A + Y+ GTTG+ KGVM THR++        A    P        L   P 
Sbjct: 162 VAAALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADPR---FLMCTPL 218

Query: 244 FHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
            H  G FF      L+   T +V+ +FD   +L+A+EE R+T   + P ++ A+      
Sbjct: 219 SHAGGAFF---LPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL 275

Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKF-PKVVLVQAYGLTE--STAGVFRTV--GPD 356
              DLSSLETV  GA+P+    +     +F P  +  Q YG TE        R     PD
Sbjct: 276 RTRDLSSLETVYYGASPMSPVRLAEAIERFGP--IFAQYYGQTEAPMVITYLRKRDHDPD 333

Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           + +R  S GR + GL   ++D + G  +  G+ GE+ +RGP +M G
Sbjct: 334 DPKRLTSCGRPTPGLRVALLDED-GREVAQGEVGEICVRGPLVMDG 378

Length = 524

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  111 bits (280), Expect = 1e-26
 Identities = 113/408 (27%), Positives = 168/408 (41%), Gaps = 83/408 (20%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILY 112
           R  D  AL+    GLR ++ EF    ++LA  L  +   + K D   + + N  E  +  
Sbjct: 28  RYPDREALVYRDQGLRWTYREFNEEVDALAKGL--LALGIEKGDRVGIWAPNVPEWVLTQ 85

Query: 113 FSLLSLGVIISPANPVNTESEIS---RQIQLSNPVIA--FATSSVV-------------- 153
           F+   +G I+   NP    SE+     Q      + A  F  S  V              
Sbjct: 86  FATAKIGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCE 145

Query: 154 ------HKLAKLKHRTILIDSPEFDSMTMSWN---------SKHELDR--AKVCQSDVAA 196
                  +L +L+ R I +   +   M ++++            EL    A +   D   
Sbjct: 146 PGQLQSARLPELR-RVIFLGDEKHPGM-LNFDELLALGRAVDDAELAARQATLDPDDPIN 203

Query: 197 IMYSSGTTGRVKGVMLTHRNLT---AAVASSFASSPK-RVSPAVMLFTMPYFHIYGLFF- 251
           I Y+SGTTG  KG  LTHRN+      +  +   + + R+   V     P +H +G+   
Sbjct: 204 IQYTSGTTGFPKGATLTHRNILNNGYFIGEAMKLTEEDRLCIPV-----PLYHCFGMVLG 258

Query: 252 ---CFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
              C    A   T V   + FD    L AVEE R T     P + +A         +DLS
Sbjct: 259 NLACVTHGA---TMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLS 315

Query: 308 SLETVACGAAPLGKDTIMAFASKFP-----KVV-------LVQAYGLTESTAGVFRT-VG 354
           SL T        G   IMA  S  P     +V+       +  AYG+TE++    +T   
Sbjct: 316 SLRT--------G---IMA-GSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTD 363

Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
               +R  + GR    LE KIVDPETG+++P G++GEL  RG ++MKG
Sbjct: 364 DPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKG 411

Length = 559

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  108 bits (273), Expect = 6e-26
 Identities = 89/348 (25%), Positives = 149/348 (42%), Gaps = 41/348 (11%)

Query: 70  VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
           V+F E      S+A  L  +  + K D   +L  N +E+ ++  +L  LG +    N   
Sbjct: 28  VTFMELHEAVVSVAGKLAALG-VKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRL 86

Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTI--LIDSPEFDSMTMSWNSKHELDRA 187
           +  E+  Q+  +             KL          L++ P+ +        + +LD  
Sbjct: 87  SREELLWQLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPKEE---AEIQEEFDLD-- 141

Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAV---------ML 238
                +VA IMY+SGTTG+ KGV+ T+ N        + S+   V  A+          L
Sbjct: 142 -----EVATIMYTSGTTGKPKGVIQTYGN-------HWWSA---VGSALNLGLTEDDCWL 186

Query: 239 FTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
             +P FHI GL    R+       V++++FD + + K ++   VT  +V   ++  + + 
Sbjct: 187 AAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLER 246

Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTESTAGVFRTVGPDE 357
                Y  SS   +  G  P  K  +     K  P   + Q+YG+TE TA    T+ P++
Sbjct: 247 LGEGTYP-SSFRCMLLGGGPAPKPLLEQCKEKGIP---VYQSYGMTE-TASQIVTLSPED 301

Query: 358 CR-RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
              + GS G+     E KI     G  +PP +EGE+ ++GP + KG  
Sbjct: 302 ALTKLGSAGKPLFPCELKIEK--DGVVVPPFEEGEIVVKGPNVTKGYL 347

Length = 483

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score =  107 bits (269), Expect = 9e-26
 Identities = 87/346 (25%), Positives = 148/346 (42%), Gaps = 28/346 (8%)

Query: 71  SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG---VIISPANP 127
           ++ E   R N LA +L+    +   D   VL   S E+ +   ++L  G   V + PA P
Sbjct: 1   TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYP 60

Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRA 187
                 ++  ++ +   +    S++  +LA L    IL+D  E  ++  +         A
Sbjct: 61  ---AERLAFILEDAGARLLLTDSALASRLAGLVLPVILLDPLELAALDDAPAP--PPPDA 115

Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPY--- 243
                D+A ++Y+SG+TGR KGV++THR+L   +A    +    + P   +L        
Sbjct: 116 PSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAW--LARRYGLDPDDRVLQFASLSFD 173

Query: 244 FHIYGLFFCFRAAALMETAVV----MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
             +  +F    A A   T VV     +R D  ++   + E  VT   +TP ++  ++   
Sbjct: 174 ASVEEIFGALLAGA---TLVVPPEDEERDDAALLAALIAEHPVTVLNLTPSLLALLA--- 227

Query: 300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDEC 358
           +     L+SL  V  G   L    +  + ++ P   L+  YG TE+T       V PD+ 
Sbjct: 228 AALPPALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDPDDA 287

Query: 359 RRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            R      GR  A     ++D +    +P G  GEL I GP + +G
Sbjct: 288 PRESPVPIGRPLANTRLYVLDDD-LRPVPVGVVGELYIGGPGVARG 332

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  108 bits (272), Expect = 9e-26
 Identities = 93/384 (24%), Positives = 166/384 (43%), Gaps = 55/384 (14%)

Query: 64  SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIIS 123
           S  G  +++ E  + + + A++LQ  T L   D   V   N ++ P+  F  +  G+I+ 
Sbjct: 44  SNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLIVV 103

Query: 124 PANPVNTESEISRQIQ---------LSN---------------------------PVIAF 147
             NP+ T  E+  Q           L+N                           P+   
Sbjct: 104 NTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRL 163

Query: 148 ATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207
             ++VV  + K+     L  + +F+   ++  +   +  A     DVA + Y+ GTTG  
Sbjct: 164 LINAVVKHVKKMVPAYHLPQAVKFNDA-LAKGAGQPVTEANPQADDVAVLQYTGGTTGVA 222

Query: 208 KGVMLTHRNLTAAVASSFASSPKRVSPA--VMLFTMPYFHIYGLFFCFRAAALMETA--- 262
           KG MLTHRNL A +    A     ++    +++  +P +HIY   F F   A+M      
Sbjct: 223 KGAMLTHRNLVANMLQCRALMGSNLNEGCEILIAPLPLYHIYA--FTFHCMAMMLIGNHN 280

Query: 263 -VVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321
            ++    DL  M+K + +++ +       + VA+    +    D S+L+    G   L  
Sbjct: 281 ILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQL 340

Query: 322 DTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP 378
            T    A ++ +V    + + YG+TE++  V  +V P +  + G+ G        K++D 
Sbjct: 341 AT----AERWKEVTGCAICEGYGMTETSPVV--SVNPSQAIQVGTIGIPVPSTLCKVIDD 394

Query: 379 ETGDSLPPGKEGELSIRGPTIMKG 402
           + G+ LP G+ GEL ++GP +MKG
Sbjct: 395 D-GNELPLGEVGELCVKGPQVMKG 417

Length = 562

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  106 bits (267), Expect = 4e-25
 Identities = 78/221 (35%), Positives = 108/221 (48%), Gaps = 18/221 (8%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS----SFASSPKRVSPAVMLFTMPYFHIYG 248
           DVA + Y+ GTTG  KG MLTH NLT+AV+        S   R     ++  +P FHIY 
Sbjct: 193 DVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIYA 252

Query: 249 ----LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
               L    R   L+    + QRFD+  + + +EE R T     P + +A++   S +  
Sbjct: 253 LTVILLRSLRRGDLIS---LHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKR 309

Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE--STAGVFRTVGPDECRRWG 362
           DLSSL T+  G APL  +    F  K     L   +G+TE  S        GPD   + G
Sbjct: 310 DLSSLATIGSGGAPLPVEVANFFERKTGL-KLKSGWGMTETCSPGTGHPPEGPD---KPG 365

Query: 363 STGRLSAGLEAKIVD-PETGDSLPPGKEGELSIRGPTIMKG 402
           S G +  G+E  +V   +    LPPG+ GEL IRGP + +G
Sbjct: 366 SIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRG 406

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  106 bits (266), Expect = 6e-25
 Identities = 95/377 (25%), Positives = 166/377 (44%), Gaps = 58/377 (15%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRL--SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
           R ++++F RR   LA+ L+    L     D    L+ N+     LYF++  +G ++   N
Sbjct: 25  RYTYADFYRRVRRLANALE---SLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLN 81

Query: 127 PVNTESEISRQIQLSN-----------PVIAFATSSVVHKLAKLKHRTILIDSPEFDSMT 175
           P  +  +I+  I  +            P++     ++  +L  +K   +  D+   ++  
Sbjct: 82  PRLSPEQIAYIINHAEDKVIFVDDDFLPLLE----AIAPRLPTVKAVVVYDDADMPETSL 137

Query: 176 MSWNSKHELDRA--------KVCQSDVAAIMYSSGTTGRVKGVMLTHRN-----LTAAVA 222
            +  +  EL           ++ ++  A + Y+SGTTG  KGV+ +HR+     L +A+ 
Sbjct: 138 PNVYAYEELLEEESPEYEWPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALP 197

Query: 223 SSFASSPKRVSPAVMLFTMPYFHI--YGLFFCFRAAALMETAVVM--QRFDLKMMLKAVE 278
            S   S       V+    P FH+  +GL +   AA ++   +V+  +  D   +L  +E
Sbjct: 198 DSLGLSESDT---VLPVV-PMFHVNAWGLPY---AATMVGAKLVLPGRYLDPASLLDLIE 250

Query: 279 EFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338
           E +VT +A  P I + +      +G DLSSL  V  G + L +  I     +  +V  + 
Sbjct: 251 EEKVTVSAGVPTIWLGLLNYLEANGKDLSSLRRVVVGGSALPRSLIEKLEERGVEV--IH 308

Query: 339 AYGLTE----STAGVFRT--VGPDECRRWG---STGRLSAGLEAKIVDPETGDSLPP-GK 388
           A+G+TE     T    +   V   E  +       GR   G+E +IVD E  + LP  GK
Sbjct: 309 AWGMTETSPLGTVSRLKPHLVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNE-LPWDGK 367

Query: 389 -EGELSIRGPTIMKGIF 404
             GEL +RGP +    +
Sbjct: 368 TVGELVVRGPWVTGSYY 384

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  106 bits (265), Expect = 7e-25
 Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 6/211 (2%)

Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFR 254
           A IMY+SGTTGR KG +LTH NLT    +   ++   ++  V    +P FHI G+     
Sbjct: 177 ALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTNGADINSDVGFVGVPLFHIAGIGSMLP 236

Query: 255 AAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
              L    V+  +  FD   +L  +E  +VT   + P    A+         DL +L  +
Sbjct: 237 GLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDL-ALRVL 295

Query: 313 ACGAAPLGKDTIM-AFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGL 371
           + GAAP   DT++   A+ FP+  ++ A+G TE +      +G D  R+ GS G++   +
Sbjct: 296 SWGAAP-ASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTV 354

Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            A++VD    D +P G+ GE+  R PT+M G
Sbjct: 355 AARVVDENMND-VPVGEVGEIVYRAPTLMSG 384

Length = 542

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  103 bits (260), Expect = 1e-24
 Identities = 69/229 (30%), Positives = 96/229 (41%), Gaps = 27/229 (11%)

Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF 250
             D+AA  ++ GTTG  K    +HRN  A    +   S       V+L  +P FH+ G  
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPG-DVLLNGLPLFHVGGAI 59

Query: 251 ----FCFRAAA--LMETAV------VMQRFDLKMMLKAVEEFRVTH-AAVTPPIVVAMSK 297
                     A  ++ T        V+  F      K VE +RVT  +AV  P V+A   
Sbjct: 60  VTGLAPLARGATVVLPTPSGFRNPAVVANF-----WKIVERYRVTLLSAV--PTVLAALL 112

Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357
                  D+SSL     GAAPL  +    F +    V +V+ YG+TE T GV        
Sbjct: 113 QVPLGDADISSLRYALTGAAPLPVEVARRFEAV-TGVPVVEGYGMTEGT-GVSAINPRGG 170

Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLP----PGKEGELSIRGPTIMKG 402
            RR GS G        ++   + G +L     PG+ G L+IRGP +  G
Sbjct: 171 PRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPG 219

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  104 bits (260), Expect = 2e-24
 Identities = 85/340 (25%), Positives = 140/340 (41%), Gaps = 39/340 (11%)

Query: 71  SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
           ++ +       LA  L+    +       ++  NSIE+ +L  + L LG  I+  N   T
Sbjct: 1   TWQDLDCEAAHLAKALK-AQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLT 59

Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC 190
           E+E + Q++  +  +    S        L+ +    DS   D +  +   +  L  A   
Sbjct: 60  ENERTNQLEDLDVQLLLTDS-------LLEEKDFQADS--LDRIEAAGRYETSLS-ASFN 109

Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRN-LTAAVAS--SFASSPKRVSPAVMLFTMPYFHIY 247
              +A +M++SGTTG+ K V  T RN   +AV S  +   +         L ++P +HI 
Sbjct: 110 MDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGFTED----DNWLLSLPLYHIS 165

Query: 248 GLFFCFRAAALMETAVVMQRF-DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
           GL   FR      T  ++ +F  L  M+      RVTH ++ P  +  +   G  +    
Sbjct: 166 GLSILFRWLIEGATLRIVDKFNQLLEMIA---NERVTHISLVPTQLNRLLDEGGHN---- 218

Query: 307 SSLETVACGAAPLGKDTI-MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG 365
            +L  +  G + +    I  A     P   +  +YG+TE T     T  P+        G
Sbjct: 219 ENLRKILLGGSAIPAPLIEEAQQYGLP---IYLSYGMTE-TCSQVTTATPEMLHARPDVG 274

Query: 366 RLSAGLEAKI-VDPETGDSLPPGKEGELSIRGPTIMKGIF 404
           R  AG E KI VD + G        GE+ ++G  +MKG  
Sbjct: 275 RPLAGREIKIKVDNKEG-------HGEIMVKGANLMKGYL 307

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  104 bits (261), Expect = 3e-24
 Identities = 103/391 (26%), Positives = 162/391 (41%), Gaps = 61/391 (15%)

Query: 64  SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIIS 123
           S  G+ +S++E  R + + A+YLQ  T L   D   V   N ++ PI  F  L  G+I+ 
Sbjct: 44  SNLGVTLSYAELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLIVV 103

Query: 124 PANPVNTESEISRQIQ--------------------LSNPVIAFA--------------- 148
             NP+ T  E+  Q +                    L +  I +                
Sbjct: 104 NTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGW 163

Query: 149 -TSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207
             ++VV K+ K+     L  +  F    +       L    V   D+A + Y+ GTTG  
Sbjct: 164 LVNTVVDKVKKMVPAYHLPQAVPFKQA-LRQGRGLSLKPVPVGLDDIAVLQYTGGTTGLA 222

Query: 208 KGVMLTHRNLTA---AVASSFASSPKRVSP------AVMLFTMPYFHIYGLFFCFRAAAL 258
           KG MLTH NL A    V +  +       P       VM+  +P +HIY   F      +
Sbjct: 223 KGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYA--FTANCMCM 280

Query: 259 META----VVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVAC 314
           M +     ++    D+   +K + ++R +       + VA+         D S+L+    
Sbjct: 281 MVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNS 340

Query: 315 GAAPLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGL 371
           G   L K T    A ++ ++    +V+ YGLTE T+ V  T    E  R G+ G    G 
Sbjct: 341 GGTALVKAT----AERWEQLTGCTIVEGYGLTE-TSPVASTNPYGELARLGTVGIPVPGT 395

Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             K++D + G+ LP G+ GEL I+GP +MKG
Sbjct: 396 ALKVIDDD-GNELPLGERGELCIKGPQVMKG 425

Length = 562

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  103 bits (258), Expect = 4e-24
 Identities = 86/350 (24%), Positives = 152/350 (43%), Gaps = 18/350 (5%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
             +A ++   G R +++E       LA+ L+        +   VL+ NS+ +  L+F+  
Sbjct: 10  QRLAAVDLALGRRWTYAELDALVGRLAAVLRR-RGCVDGERLAVLARNSVWLVALHFACA 68

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
            +G I  P N   + SE+   +Q + P +      ++   A    RT + D     +   
Sbjct: 69  RVGAIYVPLNWRLSASELDALLQDAEPRL------LLGDDAVAAGRTDVED---LAAFIA 119

Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAV 236
           S ++    D   +    V+ I+++SGT+G+ KGVML+ RNL    A +F    +  + + 
Sbjct: 120 SADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQT-AHNFGVLGRVDAHSS 178

Query: 237 MLFTMPYFHIYGLFFCFRAAALMETAV-VMQRFDLKMMLK--AVEEFRVTHAAVTPPIVV 293
            L   P FHI GL    R    +  ++ V   F+ K  L         +TH    P +  
Sbjct: 179 FLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQ 238

Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353
           A       D   L  L  +  G AP   + I+ +      + +V  +G++E+      +V
Sbjct: 239 AFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSV 296

Query: 354 GPDECR-RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             D  R + G+ G  +  ++ ++VD + G+  P G  GEL +RGP +  G
Sbjct: 297 DCDVIRAKAGAAGIPTPTVQTRVVD-DQGNDCPAGVPGELLLRGPNLSPG 345

Length = 488

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  102 bits (257), Expect = 9e-24
 Identities = 101/403 (25%), Positives = 157/403 (38%), Gaps = 74/403 (18%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D  AL+     LR ++ +     + LA  L  +  +   D   + + N  E  +  F
Sbjct: 30  RFPDREALVVRHQALRYTWRQLADAVDRLARGLLALG-VQPGDRVGIWAPNCAEWLLTQF 88

Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP--VI---AFATSSVVHKL------------ 156
           +   +G I+   NP    SE+   +  S    VI   AF TS     L            
Sbjct: 89  ATARIGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQP 148

Query: 157 -----AKLKH--RTILIDSPEFDSMTMSWN---------SKHELD--RAKVCQSDVAAIM 198
                 +L      + +          +W+         S+  L   +A + + D   I 
Sbjct: 149 GALACERLPELRGVVSLAPAPPPGFL-AWHELQARGETVSREALAERQASLDRDDPINIQ 207

Query: 199 YSSGTTGRVKGVMLTHRNLT-----AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCF 253
           Y+SGTTG  KG  L+H N+       A +       +   P      +P +H +G+    
Sbjct: 208 YTSGTTGFPKGATLSHHNILNNGYFVAESLGLTEHDRLCVP------VPLYHCFGMVLAN 261

Query: 254 RAAALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
                +   +V   + FD    L+AVEE R T     P + +A         +DLSSL T
Sbjct: 262 LGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRT 321

Query: 312 VACGAAPLGKDTIMAFASKFPKVV-----------LVQAYGLTESTAGVFRTVGPDEC-R 359
                       IMA A    +V+           +  AYG+TE++    +T   D+  R
Sbjct: 322 -----------GIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLER 370

Query: 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           R  + GR    LE K+VDP+ G ++P G+ GEL  RG ++MKG
Sbjct: 371 RVETVGRTQPHLEVKVVDPD-GATVPRGEIGELCTRGYSVMKG 412

Length = 558

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 98.6 bits (246), Expect = 3e-22
 Identities = 103/413 (24%), Positives = 176/413 (42%), Gaps = 56/413 (13%)

Query: 32  PPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR 91
           P  + P++  +Y+ +     P       A+I    G  ++++E    ++  A+ L+    
Sbjct: 29  PHGERPLT--EYLRAWARERP----QRPAII--FYGHVITYAELDELSDRFAALLRQRG- 79

Query: 92  LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNP--VIAF-A 148
           +   D   V   N  +  I++F +L LG +  P +P+  E E+S ++  +    ++A   
Sbjct: 80  VGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQ 139

Query: 149 TSSVVHK-LAKLKHRTILIDS--------------PEFDSMTMSWNSKHELDRAKVCQS- 192
            + VV +  A+   R +++ S                  +  ++     +L  A    + 
Sbjct: 140 LAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTA 199

Query: 193 ----------DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242
                      +AA+ Y+ GTTG  KG   T R++    A+++A +      +V L  +P
Sbjct: 200 PVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVGGEDSVFLSFLP 259

Query: 243 YFHIYG-----LFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
            F I G     LF  F  A    T V++ R+D    + AVE +RVT   +     V +  
Sbjct: 260 EFWIAGENFGLLFPLFSGA----TLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMD 315

Query: 298 GGSTDGYDLSSLETVACGA--APLGKDTIMAFASKFPKVVLVQAYGLTES------TAGV 349
                 YDLSSL  V   +    L  D    + +    V+   A+G+TE+      TAG 
Sbjct: 316 HPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAG- 374

Query: 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           F+    D   +    G    G E KI D ETG+ LP G EGE+ +R P+++KG
Sbjct: 375 FQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKG 427

Length = 567

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score = 98.4 bits (245), Expect = 3e-22
 Identities = 93/394 (23%), Positives = 163/394 (41%), Gaps = 78/394 (19%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
           G  +++ E  +     A+YL    +L K D   ++  N ++ PI  F +L  G+ +   N
Sbjct: 48  GKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVN 107

Query: 127 PVNTESEISRQIQLS---------------------NPV-----------IAFATSSVVH 154
           P+ T  E+  Q+  S                      PV           + F  +++V+
Sbjct: 108 PLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVN 167

Query: 155 KLAKLKHRTILIDSPEFD-------SMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207
            + K   + +    PE+           ++   KH +   ++   D+A + Y+ GTTG  
Sbjct: 168 FVVKYVKKLV----PEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVA 223

Query: 208 KGVMLTHRNLTAAV--ASSFASSPKRVSPA--VMLFTMPYFHIYGLFFCFRAAALMETAV 263
           KG MLTHRNL A +  A  + +   ++     V++  +P +HI+         AL    +
Sbjct: 224 KGAMLTHRNLVANMQQAHQWLAGTGKLEEGCEVVITALPLYHIF---------ALTANGL 274

Query: 264 VMQRF-----------DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
           V  +            D+   +K +++ R T       +   +      D  D SSL+  
Sbjct: 275 VFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMT 334

Query: 313 ACGAAPLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRW-GSTGRLS 368
             G   + +    + A ++ +V    LV+AYGLTE++      + P   + + GS G   
Sbjct: 335 LGGGMAVQR----SVAERWKQVTGLTLVEAYGLTETSPAA--CINPLTLKEYNGSIGLPI 388

Query: 369 AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
              +A I D + G  L  G+ GEL I+GP +MKG
Sbjct: 389 PSTDACIKD-DAGTVLAIGEIGELCIKGPQVMKG 421

Length = 560

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 97.5 bits (243), Expect = 5e-22
 Identities = 95/370 (25%), Positives = 155/370 (41%), Gaps = 33/370 (8%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D  AL++      ++++  + R  +LAS L+ +  L++ +   +     +E     F
Sbjct: 12  RLPDATALVH--HDRTLTYAALSERVLALASGLRGLG-LARGERVAIYLDKRLETVTAMF 68

Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------AKLKHRTILID 167
                G +  P NP+    +++  +   N  +   +S  +  L             I++ 
Sbjct: 69  GAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVG 128

Query: 168 SPEFDSMTMSWNSKHELDRAK----------VCQSDVAAIMYSSGTTGRVKGVMLTHRNL 217
            P   S            +            V  SD+AAI+Y+SG+TGR KGV+L+HRNL
Sbjct: 129 DPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNL 188

Query: 218 TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277
            A  A S A+  +      +L  +P    YG      A  +  T V+      + +LKA+
Sbjct: 189 VAG-AQSVATYLENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATVVLHDYLLPRDVLKAL 247

Query: 278 EEFRVTHAAVTPPIVVAMS--KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335
           E+  +T  A  PP+   ++      +    L  L T + GA P  + T+    S  P   
Sbjct: 248 EKHGITGLAAVPPLWAQLAQLDWPESAAPSLRYL-TNSGGAMP--RATLSRLRSFLPNAR 304

Query: 336 LVQAYGLTESTAGVFR--TVGPDEC-RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
           L   YGLTE+    FR   + P+E  RR  S G+     E  ++  + G    PG+EGEL
Sbjct: 305 LFLMYGLTEA----FRSTYLPPEEVDRRPDSIGKAIPNAEVLVLRED-GSECAPGEEGEL 359

Query: 393 SIRGPTIMKG 402
             RG  +  G
Sbjct: 360 VHRGALVAMG 369

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 96.6 bits (241), Expect = 6e-22
 Identities = 73/341 (21%), Positives = 131/341 (38%), Gaps = 55/341 (16%)

Query: 70  VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
            +F+E    ++  A++L+++  + + D   VL     E+  +    + LG +  P     
Sbjct: 1   WTFAELKEESDRAANFLKDLG-VGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTT-- 57

Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKV 189
                                 + ++L +   R I+                        
Sbjct: 58  ----------------QLGPKDIRYRLERAGARAIVTS---------------------- 79

Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM--PYFHIY 247
              D A + ++SGTTG  K V+ TH      + +   +    + P  + +T+  P +   
Sbjct: 80  -ADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVT--GAYWLDLRPDDLHWTIADPGW-AK 135

Query: 248 GLFFCFRAAALMETAVV---MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
           G +    A  L+  AV     +RFD +  L+ +E + VT     P     + +   +  Y
Sbjct: 136 GAWSSLFAPWLLGAAVFVYHGRRFDAERTLELLERYGVTTFCAPPTAYRMLLQQDLS-SY 194

Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
           D S L  V     PL  + I  + +    + +   YG TE+   V     P    + GS 
Sbjct: 195 DFSHLRHVVSAGEPLNPEVIDWWRAAT-GLPIRDGYGQTETGLLV--ANFPGMEVKPGSM 251

Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFL 405
           GR + G    I+D E G+ LPPG+EG++++R      G+F 
Sbjct: 252 GRPAPGYRVAIIDDE-GNELPPGEEGDIAVRVKPRPPGLFR 291

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 97.4 bits (243), Expect = 6e-22
 Identities = 100/393 (25%), Positives = 168/393 (42%), Gaps = 60/393 (15%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D  A IN   G  ++F +   R+ + A+YLQN   L K D   ++  N ++ PI  F +L
Sbjct: 38  DQPAFIN--MGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGIL 95

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KH--------- 161
             G+I+   NP+ T  E+  Q+  S        S+  H L K+      KH         
Sbjct: 96  RAGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQ 155

Query: 162 -----RTIL-------------IDSPEFDSM--TMSWNSKHELDRAKVCQSDVAAIMYSS 201
                 T++                P+  S    +    + +  + ++   D+A + Y+ 
Sbjct: 156 LSTAKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPELVPEDLAFLQYTG 215

Query: 202 GTTGRVKGVMLTHRNLTAAV--ASSFASSPKRVSPAVMLFTMPYFHIYG------LFFCF 253
           GTTG  KG MLTHRN+ A +  A +           +++  +P +HI+       LF   
Sbjct: 216 GTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVTALPLYHIFALTVNCLLFIEL 275

Query: 254 RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVA 313
               L+ T       D+   +K ++++  T       +  A+         D SSL+   
Sbjct: 276 GGQNLLIT----NPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSV 331

Query: 314 CGAAPLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRW-GSTGRLSA 369
            G   + +    A A ++ K+    L++ YGLTE +  V  +V P +   + GS G    
Sbjct: 332 GGGMAVQQ----AVAERWVKLTGQYLLEGYGLTECSPLV--SVNPYDLDYYSGSIGLPVP 385

Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             E K+VD + G+ +PPG+ GEL ++GP +M G
Sbjct: 386 STEIKLVDDD-GNEVPPGEPGELWVKGPQVMLG 417

Length = 560

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 96.9 bits (242), Expect = 9e-22
 Identities = 104/398 (26%), Positives = 157/398 (39%), Gaps = 83/398 (20%)

Query: 45  SSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTN 104
            +LRA     D D    I +  GLR ++ +    +  LA+ L  +  +   D   V    
Sbjct: 7   DALRAAFA--DRDAPF-IETPDGLRYTYGDLDAASARLANLLVAL-GVKPGDRVAVQVEK 62

Query: 105 SIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL--KHR 162
           S E   LY + L  G +  P N   T +E+   I  + P +     +    L+K+     
Sbjct: 63  SPEALALYLATLRAGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAG 122

Query: 163 TILIDSPEFDSMTMSWNSKHEL-DRAKVCQS----------DVAAIMYSSGTTGRVKGVM 211
              +        T+  +    L + A               D+AAI+Y+SGTTGR KG M
Sbjct: 123 APHV-------ETLDADGTGSLLEAAAAAPDDFETVPRGADDLAAILYTSGTTGRSKGAM 175

Query: 212 LTHRNLTAAVASSFASSPK---RVSPA-VMLFTMPYFHIYGLFF----CFRAAALMETAV 263
           L+H NL      S A +     R +P  V++  +P FH +GLF        A A M   +
Sbjct: 176 LSHGNL-----LSNALTLVDYWRFTPDDVLIHALPIFHTHGLFVATNVALLAGASM---I 227

Query: 264 VMQRFDLKMMLKA---------VEEFRV---THAAVTPPIVVAMSKGGSTDGYDLSSLET 311
            + +FD   +L           V  F         +T                     E 
Sbjct: 228 FLPKFDPDAVLALMPRATVMMGVPTFYTRLLQEPRLTR--------------------EA 267

Query: 312 VA------CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP-DECRRWGST 364
            A       G+APL  +T   F  +    +L + YG+TE+      T  P D  RR G+ 
Sbjct: 268 AAHMRLFISGSAPLLAETHREFQERTGHAIL-ERYGMTET---NMNTSNPYDGERRAGTV 323

Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           G    G+  ++ DPETG  LPPG+ G + ++GP + KG
Sbjct: 324 GFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKG 361

Length = 504

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 96.6 bits (241), Expect = 1e-21
 Identities = 98/360 (27%), Positives = 146/360 (40%), Gaps = 38/360 (10%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
             ++ E   R ++LA+ L    R + K D   V S N  ++    F+   LG +  P N 
Sbjct: 32  SWTWREIDARVDALAAALA--ARGVRKGDRILVHSRNCNQMFESMFAAFRLGAVWVPTNF 89

Query: 128 VNTESEISRQIQLSNPVI-----AFAT-SSVVHKLAKLKHRTILIDSPEF----DSMTMS 177
             T  E++   + S          F   ++ V   +      + I         +++   
Sbjct: 90  RQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVAR 149

Query: 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS-SPKRVSPAV 236
            +    +  A V   D     ++SGTTGR K  +LTH  +   + +  A   P       
Sbjct: 150 -HLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDA 208

Query: 237 MLFTMPYFH---IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
            L   P  H   I+ L    R AA +      +RFD   +   VE  RVT+    P I+ 
Sbjct: 209 SLVVAPLSHGAGIHQLCQVARGAATVLLPS--ERFDPAEVWALVERHRVTNLFTVPTILK 266

Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGK-DTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
            + +  + D YD SSL  V    AP+ + D   A A      VLVQ +GL E T  +  T
Sbjct: 267 MLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGK--VLVQYFGLGEVTGNI--T 322

Query: 353 V----------GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           V          GPD   R G+ G    G+E +I D E G  LPPG+ GE+ + GP +  G
Sbjct: 323 VLPPALHDAEDGPDA--RIGTCGFERTGMEVQIQDDE-GRELPPGETGEICVIGPAVFAG 379

Length = 528

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 96.3 bits (240), Expect = 1e-21
 Identities = 93/398 (23%), Positives = 160/398 (40%), Gaps = 53/398 (13%)

Query: 42  DYVSSLRATLPWRDDDTVALI--NSVTGL--RVSFSEFTRRTNSLASYLQNVTRL--SKN 95
           D + +  A+ P    D  A+      TG   R ++ E     + +A  L    RL   + 
Sbjct: 28  DDLDACVASCP----DKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGL---ARLGVGRG 80

Query: 96  DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-- 153
           D       N  E  +LY +   +G +++P  P+  E E+S        ++  A S V+  
Sbjct: 81  DVVSCQLPNWWEFTVLYLACSRIGAVLNPLMPIFRERELSF-------MLKHAESKVLVV 133

Query: 154 -----------------HKLAKLKHRTILIDSPEFDS-----MTMSWNSKHE----LDRA 187
                             +L  L+H  +++     DS     +T +W  + +    L R 
Sbjct: 134 PKTFRGFDHAAMARRLRPELPALRH-VVVVGGDGADSFEALLITPAWEQEPDAPAILARL 192

Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247
           +    DV  ++Y+SGTTG  KGVM T   L A +   +A      +  V+L   P  H  
Sbjct: 193 RPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIV-PYAERLGLGADDVILMASPMAHQT 251

Query: 248 GLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
           G  +      ++    V+Q  +D     + +    VT    + P +  +++     G  +
Sbjct: 252 GFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPV 311

Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR 366
           SSL T  C  AP+    ++  A       +V A+G+TE+ A     +   + R   + G 
Sbjct: 312 SSLRTFLCAGAPIPG-ALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGC 370

Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
              G+E ++VD + G  LP G+ G L +RG +   G  
Sbjct: 371 PLPGVEVRVVDAD-GAPLPAGQIGRLQVRGCSNFGGYL 407

Length = 547

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 83/341 (24%), Positives = 132/341 (38%), Gaps = 64/341 (18%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
             +F +    +N LA+ L+ +  + + D   V    S E  I + ++  LG +  P + +
Sbjct: 6   EYTFGQLKDASNRLANALRELG-VERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVL 64

Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
                             F   +V H+L     R ++ D  +                  
Sbjct: 65  ------------------FGPDAVEHRLRDSGARVLVTDGSD------------------ 88

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFH 245
               D A ++Y+SGTTG  KG +  HR L      V   F  +P+     V      +  
Sbjct: 89  ----DPAILIYTSGTTGPPKGALHGHRVLLGHLPGVELYFELAPRP--GDVFWTPADWAW 142

Query: 246 IYGLFFCFRAAALMETAVV---MQRFDLKMMLKAVEEFRVTHAAVTPPIV-VAMSKGGST 301
           I GL      A      VV   MQRFD +     +  + VT+A + P  + +    G   
Sbjct: 143 IGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMRRVGSER 202

Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW 361
             YDL  L  VA G   LG+  ++ +A     + + + YG TE+       VG   C   
Sbjct: 203 ARYDL-RLRAVASGGESLGE-ELLEWARDELGLTVNEFYGQTEANL----VVG--NCAAL 254

Query: 362 -----GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
                GS G+   G E  +VD   G  +PPG+ GE++++ P
Sbjct: 255 GPARPGSMGKPVPGHEVAVVDDA-GRPVPPGEVGEIAVKRP 294

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 95.9 bits (239), Expect = 2e-21
 Identities = 91/340 (26%), Positives = 142/340 (41%), Gaps = 65/340 (19%)

Query: 104 NSIEIPILYFSLLSLGVIISPANPVNTESE---ISRQIQLSNPVIAFATSSVVHKLAK-- 158
           N  E    +F L  +G I+ P N      E   I +  Q S  V +     +  ++ +  
Sbjct: 71  NCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQED 130

Query: 159 ---LKHRTIL-IDSPEFDSMTMSWNSKHELDRAKVCQS------DVAAIMYSSGTTGRVK 208
              L+H  +  +  P  D    S+        A +C +      D A I+++SGTT R K
Sbjct: 131 ATPLRHICLTRVALPADDG-VSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPK 189

Query: 209 GVMLTHRNLT-AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM------ET 261
           GV++TH NL  A   S++  + +     V L  MP FHI       +  A M       T
Sbjct: 190 GVVITHYNLRFAGYYSAWQCALR--DDDVYLTVMPAFHID-----CQCTAAMAAFSAGAT 242

Query: 262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV-VAMSKGGSTDGYD-----------LSSL 309
            V+++++  +     V ++R T     P ++   M +  S +              LS  
Sbjct: 243 FVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYLNLSDQ 302

Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG--PDECRRWGSTGRL 367
           E          KD   AF  +F  V L+ +YG+TE+  G+   +G  P + RRW S GR 
Sbjct: 303 E----------KD---AFEERF-GVRLLTSYGMTETIVGI---IGDRPGDKRRWPSIGRP 345

Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIR---GPTIMKGIF 404
               EA+I D +    LP G+ GE+ I+   G TI K  +
Sbjct: 346 GFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYY 384

Length = 517

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score = 96.2 bits (240), Expect = 2e-21
 Identities = 66/230 (28%), Positives = 85/230 (36%), Gaps = 31/230 (13%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYG 248
            DVAA  ++ GTTG  K    TH N  A     A      P       +   +P FH+  
Sbjct: 213 DDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLLGLGPGDT----VFCGLPLFHVNA 268

Query: 249 LFFCFRAAALMETAVV------------MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMS 296
           L     A       VV            +  F      K VE +R+       P V A  
Sbjct: 269 LLVTGLAPLARGAHVVLATPQGYRGPGVIANF-----WKIVERYRIN-FLSGVPTVYAAL 322

Query: 297 KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
                DG+D+SSL    CGAAPL  +    F +    V +V+ YGLTE+T        PD
Sbjct: 323 LQVPVDGHDISSLRYALCGAAPLPVEVFRRFEAA-TGVRIVEGYGLTEATCVSSVNP-PD 380

Query: 357 ECRRWGSTGRLSAGLEAKIV--DPETGDS--LPPGKEGELSIRGPTIMKG 402
             RR GS G        ++V  D            + G L I GP +  G
Sbjct: 381 GERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSG 430

Length = 632

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 95.4 bits (238), Expect = 3e-21
 Identities = 97/365 (26%), Positives = 157/365 (43%), Gaps = 43/365 (11%)

Query: 60  ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
           A+I + +G  V++ E   R+N LA  L+ +  L + D   +L  N+ E   +Y++    G
Sbjct: 2   AVIMAPSGEVVTYGELEARSNRLAHGLRALG-LREGDVVAILLENNPEFFEVYWAARRSG 60

Query: 120 VIISPANPVNTESEISRQIQLSNP---VIAFATSSVVHKLAK-----LKHRTILI-DSPE 170
           +  +P N   T +EI+  +  S     +++ A +    +LA      +    ++    P 
Sbjct: 61  LYYTPINWHLTAAEIAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPG 120

Query: 171 FDSMTMSWNSKHELDRAKVCQSDV--------AAIMYSSGTTGRVKGVM--LTHRNLTAA 220
           F S           + A   Q D         A ++YSSGTTGR KG+   L   +   A
Sbjct: 121 FRS----------YEEALAAQPDTPIADETAGADMLYSSGTTGRPKGIKRPLPGLDPDEA 170

Query: 221 ---VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277
              + +           +V L   P +H   L F   A AL  T VVM++FD +  L  +
Sbjct: 171 PGMMLALLGFGMYGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALI 230

Query: 278 EEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKF-PKV 334
           E +RVTH+ + P + V M K        YD+SSL      AAP   +   A    + P  
Sbjct: 231 ERYRVTHSQLVPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGP-- 288

Query: 335 VLVQAYGLTESTAGVFRTVGPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELS 393
           ++ + Y  +E   G    +  ++     GS G+   G E +I+D E G+ LPPG+ G + 
Sbjct: 289 IIHEYYASSE--GGGVTVITSEDWLAHPGSVGKAVLG-EVRILD-EDGNELPPGEIGTVY 344

Query: 394 IRGPT 398
                
Sbjct: 345 FEMDG 349

Length = 502

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 95.2 bits (237), Expect = 3e-21
 Identities = 93/376 (24%), Positives = 147/376 (39%), Gaps = 40/376 (10%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D +A+I+    L  S++E  +R + LA+ L+ +  +   DT  V   N  E  I +F
Sbjct: 40  RYPDRIAVIDGERRL--SYAELDQRADRLAAGLRRLG-IKPGDTVLVQLPNVAEFYITFF 96

Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP---VIAFATS---------SVVHKLAKLKH 161
           +LL LGV    A P +  SE+            ++A   S          +V K   L+H
Sbjct: 97  ALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRH 156

Query: 162 RTILIDSPEFDSMTMSWNSKHEL--DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR---- 215
             +  ++     +  +      L          +VA    S GTTG  K +  TH     
Sbjct: 157 VIVAGEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYY 216

Query: 216 NLTAAVASSFASSPKR---VSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
           ++ A+                PA   F +      G+F          T V+      ++
Sbjct: 217 SVRASAEICGFDQQTVYLCALPAAHNFPLSSPGALGVFLA------GGTVVLAPDPSPEL 270

Query: 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332
               +E   VT  A+ PP+     +    +  DLSSL  +  G A L        A + P
Sbjct: 271 CFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSA----TLARRVP 326

Query: 333 KVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVDPETGDSLPPGK 388
            V+   L Q +G+ E      R   P E     + GR LS   E ++VD + G+ + PG+
Sbjct: 327 AVLGCQLQQVFGMAEGLVNYTRLDDPPE-IIIHTQGRPLSPDDEVRVVDAD-GNPVAPGE 384

Query: 389 EGELSIRGPTIMKGIF 404
            GEL  RGP  ++G +
Sbjct: 385 VGELLTRGPYTIRGYY 400

Length = 542

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 95.8 bits (239), Expect = 4e-21
 Identities = 69/225 (30%), Positives = 104/225 (46%), Gaps = 22/225 (9%)

Query: 193  DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV-SPAVMLFTMPYFHIYGLFF 251
            D A I++SSG+ G  KGVML+H N+ + +     S    + +  V+L ++P+FH +GL  
Sbjct: 783  DTATIIFSSGSEGEPKGVMLSHHNILSNIEQ--ISDVFNLRNDDVILSSLPFFHSFGLTV 840

Query: 252  CFRAAAL--METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
                  L  ++        D   + K V + R T    TP  +    +         +SL
Sbjct: 841  TLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASL 900

Query: 310  ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST------------AGVFRTVGPDE 357
              V  GA  L  +   AF  KF  + +++ YG TE++            A   R  G  E
Sbjct: 901  RLVVAGAEKLKPEVADAFEEKF-GIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKE 959

Query: 358  CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
                GS G    G+  +IVDPET + LPPG++G + I GP +MKG
Sbjct: 960  ----GSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKG 1000

Length = 1146

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 93.2 bits (232), Expect = 1e-20
 Identities = 67/213 (31%), Positives = 95/213 (44%), Gaps = 19/213 (8%)

Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV----SPAVMLFTMPYFH----I 246
            +++Y+SGTTG  KGV       T   A++       +         L T P +H     
Sbjct: 155 QSMIYTSGTTGHPKGV--RRAAPTPEQAAAAEQMRALIYGLKPGIRALLTGPLYHSAPNA 212

Query: 247 YGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK--GGSTDGY 304
           YGL    RA  L    V+  RFD + +L+ +E  R+TH  + P + + + K        Y
Sbjct: 213 YGL----RAGRLGGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKY 268

Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
           D+SSL  V   AAP   D   A    +  V+  + YG TES A  F T   D     G+ 
Sbjct: 269 DVSSLRHVIHAAAPCPADVKRAMIEWWGPVI-YEYYGSTESGAVTFAT-SEDALSHPGTV 326

Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
           G+ + G E + VD E G  LP G+ GE+  R  
Sbjct: 327 GKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIA 358

Length = 509

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 91.7 bits (228), Expect = 5e-20
 Identities = 88/359 (24%), Positives = 141/359 (39%), Gaps = 23/359 (6%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
              D  A+I + TG  V++ E   R+N LA   +++  L + D   +   N++    + +
Sbjct: 9   TTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLG-LKRGDHVAIFMENNLRYLEVCW 67

Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP---VIAFATSSVVHKLAK----LKHRTILI 166
           +    G+  +  N   T +E +  +  S     + + A   V   L K    ++HR +L 
Sbjct: 68  AAERSGLYYTCVNSHLTPAEAAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLD 127

Query: 167 ---DSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVM--LTHRNLTAA- 220
              +   F     +         A   +S    ++YSSGTTGR KG+   L  +      
Sbjct: 128 GDGELEGFVGYAEAVAGLPATPIAD--ESLGTDMLYSSGTTGRPKGIKRPLPEQPPDTPL 185

Query: 221 -VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEE 279
            + +         S  V L   P +H            L  T +VM+ FD +  L  +EE
Sbjct: 186 PLTAFLQRLWGFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLALIEE 245

Query: 280 FRVTHAAVTPPIVVAMSK--GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
           + VTH  + P +   M K      D YDLSSLE     AAP            +  ++  
Sbjct: 246 YGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIH- 304

Query: 338 QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396
           + Y  TE   G       +     G+ GR   G +  I+D + G  LPPG+ G +   G
Sbjct: 305 EYYAATEG-LGFTACDSEEWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEG 360

Length = 511

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 90.7 bits (226), Expect = 8e-20
 Identities = 81/361 (22%), Positives = 130/361 (36%), Gaps = 64/361 (17%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           +  D  AL   V G  ++++E   R + LA+ L  +      D   V    S +      
Sbjct: 3   KHPDRPAL--VVGGDTLTYAELKERADRLAARLLALG-GRAGDPVAVYGHKSPDAYAAIL 59

Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
           + L  G    P +P      I++ ++ + P                              
Sbjct: 60  ACLKAGAAYVPLDPSQPAERIAKILEAAGPAALV-------------------------- 93

Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA---SSFASSPK 230
                              D+A I+++SG+TG+ KGV ++H NL + +      F  +  
Sbjct: 94  ---------------ADPDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEG 138

Query: 231 RVSPAVMLFTMPY---FHIYGLFFCFRAAALMETAVVMQRF---DLKMMLKAVEEFRVTH 284
                V     P+     ++ LF    + A   T  V+ +    D   + + ++E  +T 
Sbjct: 139 ----DVFSNQAPFSFDLSVFDLFPALASGA---TLYVIPKEQIADPLALFEFLKEHGLTV 191

Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
               P     +      +   L SL T       L K    A   +FP   ++  YG TE
Sbjct: 192 WVSVPSFASLLLLSRELNPESLPSLRTFLFCGEVLPKKLAKALRRRFPNARIINLYGPTE 251

Query: 345 STAGVFR-TVGPDECRRWGS--TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK 401
           +T  V    V P+   R      G    GL A I+D E G  +PPG+EGEL I GP +  
Sbjct: 252 ATVAVTAYEVTPEPLSRNEPLPIGYPKPGLRALILD-EDGRPVPPGEEGELVIAGPQVSP 310

Query: 402 G 402
           G
Sbjct: 311 G 311

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 90.2 bits (225), Expect = 9e-20
 Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 17/215 (7%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF--HIYGL 249
            D+A ++Y+SG+TGR KGVM+ HR L   +A             V+ F    F   ++ +
Sbjct: 93  DDLAYVIYTSGSTGRPKGVMVEHRGLVNLLAWLQERYGLTAGDRVLQFASFSFDASVWEI 152

Query: 250 FFCFRAAALME--TAVVM---QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
           F       L+   T V+       D + + + + E R+T   + P ++ A+      +  
Sbjct: 153 F-----PPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLDAL--EPA 205

Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV--FRTVGPDECRRWG 362
            L SL  V  G   L  + +  +   FP   LV AYG TE+T  V        D      
Sbjct: 206 ALPSLRLVIVGGEALPAELVRRWRELFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSV 265

Query: 363 STGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
             GR  A     ++D E    +P G  GEL I G 
Sbjct: 266 PIGRPIANTRVYVLD-EDLRPVPVGVPGELYIGGA 299

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 75/348 (21%), Positives = 146/348 (41%), Gaps = 24/348 (6%)

Query: 70  VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
           +++ E     N   + L+    + + +   ++  ++ E P  ++  + +G +  P N + 
Sbjct: 31  LTYGELQEEVNRWGNALRE-LGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLL 89

Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLA-------KLKHRTILIDSPEF-DSMT-MSWNS 180
           T  +    +  S   +   +  +   L         L+H  ++  +     S   +   +
Sbjct: 90  TPDDYRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYAQLIATA 149

Query: 181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT 240
             EL+ A     D+A  +YSSG+TGR KGV+  H ++    A ++A +   ++   ++F+
Sbjct: 150 AEELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDML-VTAEAYAKNVLGITEDDVVFS 208

Query: 241 MP-YFHIYGL----FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
               F  YGL    +F     A   T V+M +R     +   +E ++ T     P +  A
Sbjct: 209 AAKLFFAYGLGNGLYFPLSVGA---TTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAA 265

Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
           M         DLSSL         L  +    +   F  + ++   G TE    +F +  
Sbjct: 266 MLAAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELF-GLEILDGIGSTEMLH-IFLSNR 323

Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           P    ++G++G+   G E K+VD + G+ +  G+ GEL +RG +   G
Sbjct: 324 PGAV-KYGTSGKPVPGYEVKLVDED-GEEVADGEIGELWVRGDSSAAG 369

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 86.4 bits (214), Expect = 3e-18
 Identities = 91/354 (25%), Positives = 137/354 (38%), Gaps = 47/354 (13%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
           G R +++E  R   + A  L     + + D   ++  N IE   ++     LG I  P N
Sbjct: 44  GTRWTYAEAARAAAAAAHALA-AAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPIN 102

Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSPEFDSMTMSWN- 179
                 ++   ++ S   +    ++++  L              L+D+P   S+   W+ 
Sbjct: 103 TALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWST 162

Query: 180 -----SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH-------RNLTAAVASSFAS 227
                       A V   D AAI+Y+SGTTG  KGV   H       RN    +      
Sbjct: 163 APLPPLDAPAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLE----- 217

Query: 228 SPKRVSPAVMLFT-MPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVT--- 283
               +    +L+T +P FH   L   F+A     T V+  RF       AV     T   
Sbjct: 218 ----IGADDVLYTTLPLFHTNALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTY 273

Query: 284 --HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341
              A V   I+++     S   + +     VA G          AF  +F  V L+  YG
Sbjct: 274 LLGAMV--SILLSQPARESDRAHRV----RVALGPGVPAAL-HAAFRERF-GVDLLDGYG 325

Query: 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395
            TE+   V         +R GS GRL+ G EA++VD E    LP G+ GEL +R
Sbjct: 326 STETNF-VIAVTHGS--QRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLR 375

Length = 542

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 85.4 bits (211), Expect = 6e-18
 Identities = 86/364 (23%), Positives = 144/364 (39%), Gaps = 43/364 (11%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
           R S+ E   R + +A  L     + + D       N  E   LY +   +G +++P  P+
Sbjct: 53  RFSYRELDCRVDRIAVGL-ARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPI 111

Query: 129 NTESEISRQIQLSNPVIAFATSSVV---HKLAKLKH--------------RTILI---DS 168
             E E+S        ++  A S V           H              R +++   D 
Sbjct: 112 FRERELSF-------MLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDG 164

Query: 169 PE-FDSMTMSWNSKHELDRAKVCQ------SDVAAIMYSSGTTGRVKGVMLTHRNLTAAV 221
            + FD + M+       D A +         DV  ++Y+SGTTG  KGVM T   L + +
Sbjct: 165 DDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNI 224

Query: 222 ASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEF 280
              +A   +     V+L   P  H  G  +      ++    V+Q  ++     + + E 
Sbjct: 225 H-PYAERLELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRET 283

Query: 281 RVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340
            VT    + P +  + +     G  + SL T  C  AP+    ++  A +    ++V A+
Sbjct: 284 GVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPI-PGILVERAWELLGALIVSAW 342

Query: 341 GLTESTAGVFRTVGPDECRRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398
           G+TE+  G      PD+     ST  GR   G+E K++D   G  L  G+ G L +RG +
Sbjct: 343 GMTEN--GAVTVTEPDDALEKASTTDGRPLPGVEVKVIDAN-GAKLSQGETGRLLVRGCS 399

Query: 399 IMKG 402
              G
Sbjct: 400 NFGG 403

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 84.9 bits (210), Expect = 7e-18
 Identities = 91/358 (25%), Positives = 144/358 (40%), Gaps = 35/358 (9%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D  AL++   GLR+++SE   R   +A+ L       +   A V++ NS++  I   
Sbjct: 13  RAPDACALVDPARGLRLTYSELRARVEGVAARLHARGVRPQQRVA-VVAPNSVDAVIALL 71

Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
           +L  LG + +  NP    +EI+  I+          ++ V  +       I         
Sbjct: 72  ALHRLGAVPALMNPRLKPAEIAELIKRGE------MTAAVIAVDAQVMDAIFQSGSGVRV 125

Query: 174 MTMSWNSKHELDRAKVCQS-------------DVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
           + +      +L      +S               A + Y+SGTTG  KG ++  R   + 
Sbjct: 126 LALG-----DLVGLGEPESAGPPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQRAAESR 180

Query: 221 VASSFASSPKRV-SPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVE 278
           V      +  R     V+L  MP +H+ G F    AA AL  T VV++ FD    LK +E
Sbjct: 181 VLFMSTQAGLRHGRHNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIE 240

Query: 279 EFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338
           + RVT    TP  + A++         L SLE V    A +  D ++   ++      V 
Sbjct: 241 QERVTSLFATPTHLDALAAAAEGAPLKLDSLEHVTFAGATM-PDAVLERVNQHLPGEKVN 299

Query: 339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDS--LPPGKEGELSI 394
            YG TE+   ++         R G+  R     E +IV         LP G+EGEL +
Sbjct: 300 IYGTTEAMNSLY-----MRDPRTGTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVV 352

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 85.4 bits (211), Expect = 7e-18
 Identities = 71/348 (20%), Positives = 127/348 (36%), Gaps = 23/348 (6%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D VAL+     L  +++E   R N LA  L +   +   +T  +L+  S+E+ +   ++L
Sbjct: 242 DAVALVRGGQQL--TYAELDARANRLARLLIS-LGVGPGETVAILADRSLELVVALLAVL 298

Query: 117 SLG---VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
             G   V + P  P      ++  ++ S P +    + +      L    + +D      
Sbjct: 299 KAGAAYVPLDPLYPAER---LAYILEDSRPTLLLTQAHLRVDDVGL--PGLALDDALS-- 351

Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233
                    +     +    +A I+Y+SG+TG+ KGV + HR L   +  + A       
Sbjct: 352 ----EIPDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDAD 407

Query: 234 PAVMLFTMPYF--HIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPI 291
             V+      F   ++ +F      A +  A  + + D   +L+ +E   +T   + P +
Sbjct: 408 DRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLL 467

Query: 292 VVAMSKGG--STDGYDLSSLETVACGAAPLGKDTI-MAFASKFPKVVLVQAYGLTESTAG 348
           +  +               L  +  G   L    +            L+  YG TE+T  
Sbjct: 468 LRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLD 527

Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396
                   E       GR  A  +  I+D +    LP G  GEL I G
Sbjct: 528 APSFPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAG 574

Length = 642

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 83.0 bits (206), Expect = 3e-17
 Identities = 59/217 (27%), Positives = 92/217 (42%), Gaps = 23/217 (10%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY---FHIYG 248
            D A ++Y+SG+TG+ KGV++THRN+   + +  A    R    V+ F         I  
Sbjct: 99  DDPAYVIYTSGSTGKPKGVVITHRNICNFLRAEGAILGIRPGDRVLQF-ASIAFDVSILE 157

Query: 249 LFFCFRAAALMETAVVMQRFDLKMML-KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
           +F    A     T V+         L + +   RVT A +TP      S     D  D+ 
Sbjct: 158 IFTTLLAGG---TLVIPPEELRLEDLAEFLNRLRVTVAHLTP------SLLALLDPEDVP 208

Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST--AGVFRTVGPDECRRWGSTG 365
           SL T+  G     +  +  ++       L+  YG TE+T  A   R + P +     + G
Sbjct: 209 SLRTLILGGEACPQALVDRWS---KPRRLLNTYGPTEATVTATASR-LTPGKPV---NIG 261

Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           R        ++DP+    +P G  GEL I GP + +G
Sbjct: 262 RPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARG 298

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 82.7 bits (205), Expect = 4e-17
 Identities = 68/300 (22%), Positives = 101/300 (33%), Gaps = 83/300 (27%)

Query: 157 AKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
             L +  ++ D     S+                  D+A I +SSG+TG  KGV+LTH+N
Sbjct: 87  NILNNPFLITDRDSLLSLP----------------DDIAFIQFSSGSTGEPKGVILTHKN 130

Query: 217 LTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL----FFCFRAAA---LMETAVVMQRFD 269
           L   +  +   + +  S  V L  MP  H  GL               LM T + ++R  
Sbjct: 131 LLTNI-EAIIEAAEITSEDVFLSWMPLTHDMGLIGFHLTPTALGINQYLMPTRLFIRRPL 189

Query: 270 LKMMLKAVEEFRVT--------------HAAVTPPIVVAMSKGGSTDGYDLSSLETVACG 315
           L   L    + R T              H      I            +DLSS+  +  G
Sbjct: 190 L--WLDKASQHRATILSSPNFGYKYLLKHFKTEKII-----------DWDLSSVRLIFNG 236

Query: 316 AAPLGKDTIMAF-----ASKFPKVVLVQAYGLTESTAGV--------FRTV--------- 353
           A P+  D    F             +   YGL E+T  V        F+TV         
Sbjct: 237 AEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLDRNHLKV 296

Query: 354 ---------GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
                       +   +   G    G E +IVD + G+ LP    G + I+G  +  G +
Sbjct: 297 GVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVD-DAGEVLPDRTIGHIQIKGDNVTSGYY 355

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 81.6 bits (202), Expect = 7e-17
 Identities = 77/342 (22%), Positives = 129/342 (37%), Gaps = 56/342 (16%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
              +++ E     N  A+ L+    +S  D   +L  +S E+   + + L  G +    N
Sbjct: 8   EQSLTYRELHDLANRFANVLRA-LGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALN 66

Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDR 186
           P+ T  ++   +  S                      +L+   +                
Sbjct: 67  PLLTPQDLEHILDDSGA-------------------ALLVTEAD---------------- 91

Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP-YFH 245
                 D+A  +Y+SGTTG+ KGVM  HR+     A +FA     + P   +F+    F 
Sbjct: 92  ------DIAYWLYTSGTTGKPKGVMHRHRDPLTF-AEAFARELLGLQPGDRIFSSSKLFF 144

Query: 246 IYGL----FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
            YGL     F   + A   +AV++      + +L  +   R T     P +  A+ + G+
Sbjct: 145 AYGLGNSLLFPLFSGA---SAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGA 201

Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
                  S+         L       +A      +L    G TE    +F +  P   R 
Sbjct: 202 GSAPLFRSVRLCVSAGEALPAGLAERWAEATGIEIL-DGIGSTE-VLHIFISNRPGAARP 259

Query: 361 WGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            G+TGR   G EA++VD   G  +P G  G+L +RGP++  G
Sbjct: 260 -GTTGRPVPGYEARLVDES-GREVPAGTVGDLWVRGPSLAPG 299

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 81.1 bits (201), Expect = 2e-16
 Identities = 90/387 (23%), Positives = 143/387 (36%), Gaps = 65/387 (16%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D VAL+      R++++E   R N LA YL     L   D   + + N IE         
Sbjct: 18  DRVALV--CGDRRLTYAELEERANRLAHYLIAQG-LGPGDHVGIYARNRIEYVEAMLGAF 74

Query: 117 SLGVIISPANPVN-----TESEISRQIQLSNPVIAFATSS-------VVHKLAKLKHRTI 164
               +     PVN      E E+   +  S+ V              V+ +L KL+   +
Sbjct: 75  KARAV-----PVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRT-LV 128

Query: 165 LID---SPEFDSMTMSWNS-----KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
           +++     +     + +         E D  +    D+  ++Y+ GTTG  KGVM    +
Sbjct: 129 VVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLY-LLYTGGTTGMPKGVMWRQED 187

Query: 217 L--TAAVASSFASSP---------KRVS---PAVMLFTMPYFHIYGLFFCFRAAALMETA 262
           +         FA+           KR +           P  H  G +  F AA      
Sbjct: 188 IFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWAAF-AALFSGQT 246

Query: 263 VVM---QRFDLKMMLKAVEEFRVTHAAVT-----PPIVVAMSKGGSTDGYDLSSLETVAC 314
           VV+    RFD   + + +E  +V    +       P++ A+   G    YDLSSL  +A 
Sbjct: 247 VVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARG---PYDLSSLFAIAS 303

Query: 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG--RLSAGLE 372
           G A        A     P VVL  + G +E+  G   TV          TG  R + G  
Sbjct: 304 GGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGA----VHTGGPRFTIGPR 359

Query: 373 AKIVDPETGDSLPPG--KEGELSIRGP 397
             ++D + G+ + PG  + G ++ RG 
Sbjct: 360 TVVLDED-GNPVEPGSGEIGWIARRGH 385

Length = 533

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 81.2 bits (200), Expect = 2e-16
 Identities = 101/382 (26%), Positives = 160/382 (41%), Gaps = 63/382 (16%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
           R ++ +   R   LA+ L ++  ++KND   VL+ N+  +  ++F++   G +++P N  
Sbjct: 39  RFTWPQTYDRCCRLAASLISLN-ITKNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTR 97

Query: 129 NTESEISRQIQLSNPVIAFATSS-------VVHKL----AKLKHRTILIDSPEFDSMTMS 177
              + I+  ++ + P I F   S       V+H L    + L    I I   +F     S
Sbjct: 98  LDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSS 157

Query: 178 WNSKHE--LDRAKVCQSDVAAIM------------YSSGTTGRVKGVMLTHRNLTAAVAS 223
               +E  + R +   S VA +             Y+SGTT   KGV+++HR    +  S
Sbjct: 158 EELDYECLIQRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLS 217

Query: 224 SFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVT 283
           +         P V L+T+P FH  G  F +  AA   T+V M+      + K +E   VT
Sbjct: 218 AIIGWEMGTCP-VYLWTLPMFHCNGWTFTWGTAARGGTSVCMRHVTAPEIYKNIEMHNVT 276

Query: 284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ----- 338
           H    P +   + KG S D    S    V  G +P             P   LV+     
Sbjct: 277 HMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSP-------------PPAALVKKVQRL 323

Query: 339 ------AYGLTESTAGVFRTVGPDECRRWGSTGRLS----AGL------EAKIVDPETGD 382
                 AYGLTE+T  V      DE  R     ++      G+      +  + + ET +
Sbjct: 324 GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQE 383

Query: 383 SLP-PGKE-GELSIRGPTIMKG 402
           S+P  GK  GE+ I+G +IMKG
Sbjct: 384 SVPRDGKTMGEIVIKGSSIMKG 405

Length = 579

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 105/398 (26%), Positives = 145/398 (36%), Gaps = 99/398 (24%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
             R +++E   R   LAS L     + + DT  VL  N   +   +F +   G ++   N
Sbjct: 41  DRRRTWAETYARCRRLASALARRG-IGRGDTVAVLLPNIPAMVEAHFGVPMAGAVL---N 96

Query: 127 PVNTESEISRQIQLSNPVIAF--------------ATSSVVHK-LAKLKHRTIL---IDS 168
            +NT        +L    IAF                + V  + LA L     L   +D 
Sbjct: 97  TLNT--------RLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDD 148

Query: 169 PEFDSMTMSWNSKHELDRAKVCQS--------------DVAAIMYSSGTTGRVKGVMLTH 214
           PE+            LD      S              D  A+ Y+SGTTG  KGV+  H
Sbjct: 149 PEYPGGR----FIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHH 204

Query: 215 RN--LTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
           R   L A         PK     V L+T+P FH  G  F +  AA   T V +++ D K+
Sbjct: 205 RGAYLNALSNILAWGMPKH---PVYLWTLPMFHCNGWCFPWTVAARAGTNVCLRKVDPKL 261

Query: 273 MLKAVEEFRVTH--AAVTPPIVVAM---SKGGSTDGYDLSSLETVACGAAP----LGKDT 323
           +   + E  VTH   A   PIV++    +      G D      VA GAAP    + K  
Sbjct: 262 IFDLIREHGVTHYCGA---PIVLSALINAPAEWRAGIDHPVHAMVA-GAAPPAAVIAKME 317

Query: 324 IMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE-CRRWGSTGRLSAGLEAKI------- 375
            + F        L   YGLTE       T GP   C        L     A++       
Sbjct: 318 EIGFD-------LTHVYGLTE-------TYGPATVCAWQPEWDALPLDERAQLKARQGVR 363

Query: 376 ---------VDPETGDSLPPGKE--GELSIRGPTIMKG 402
                    +DP+T   +P   E  GE+  RG  +MKG
Sbjct: 364 YPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKG 401

Length = 545

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 80.0 bits (198), Expect = 3e-16
 Identities = 65/259 (25%), Positives = 104/259 (40%), Gaps = 41/259 (15%)

Query: 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242
            +D  +  + D+A +  +SG+TG  K V +TH NL A   + F ++   V   VM+  +P
Sbjct: 143 PIDPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVETDVMVSWLP 202

Query: 243 YFHIYGL--FF----CFRAAALMETAVVMQRFDLKMMLKAVEEFR--VTHAAVTPPIVVA 294
            FH  G+  F      F A  +  T +   R  L    + + ++R  +T A      ++A
Sbjct: 203 LFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWA-ELISKYRGTMTAAPNFAYALLA 261

Query: 295 --MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFAS-----KFPKVVLVQAYGLTESTA 347
             + +      +DLSSL     GA P+    +                ++ AYG+ E+T 
Sbjct: 262 RRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATL 321

Query: 348 GV-FRTVG-----------------------PDECRRWGSTGRLSAGLEAKIVDPETGDS 383
            V F   G                           RR  + G    GLE ++VD E G  
Sbjct: 322 AVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQV 380

Query: 384 LPPGKEGELSIRGPTIMKG 402
           LPP   G + +RG ++  G
Sbjct: 381 LPPRGVGVIELRGESVTPG 399

Length = 545

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 79.3 bits (196), Expect = 6e-16
 Identities = 68/262 (25%), Positives = 102/262 (38%), Gaps = 64/262 (24%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPYFHIYGL 249
           D A ++ +SG+TG  K V+LTHRN+ A  A +      +P  VS    L  MP  H+ G+
Sbjct: 168 DPALLLLTSGSTGVPKCVVLTHRNILARSAGTVQVNGFTPDDVS----LNWMPLDHVGGI 223

Query: 250 FFC-FRAAALM------ETAVVMQR----FDLKMMLKAVEEFRVTHAAVT--PPIVVAM- 295
                R   L        T  ++       DL      ++ +RVT   +T  P    A+ 
Sbjct: 224 VMLHLRDVYLGCQQIHVPTDYILADPLRWLDL------IDRYRVT---ITWAPNFAFALL 274

Query: 296 ---SKGGSTDGYDLSSLETVACGAAPLGKDTIMAF-----ASKFPKVVLVQAYGLTESTA 347
               +      +DLSSL  +      +   TI  F         P   +  A+G++E+ +
Sbjct: 275 NDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCS 334

Query: 348 GVFRTVGPDECRRWG-------------------------STGRLSAGLEAKIVDPETGD 382
           GV  + G       G                           GR   G+  +IVD E G 
Sbjct: 335 GVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD-EDGA 393

Query: 383 SLPPGKEGELSIRGPTIMKGIF 404
            LP G+ G L +RGPT+  G +
Sbjct: 394 LLPEGEVGRLQVRGPTVTSGYY 415

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 78.8 bits (195), Expect = 9e-16
 Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 12/211 (5%)

Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA 256
           ++ +SGTTG  KG      +  A +A   +  P R      L   P FH  G      A 
Sbjct: 212 VILTSGTTGTPKGAPRPEPSPLAPLAGLLSRVPFRAG-ETTLLPAPMFHATGWAHLTLAM 270

Query: 257 ALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA--MSKGGSTDG-YDLSSLETVA 313
           AL  T V+ +RFD +  L+ + + + T A V  P++++  +  G      YD SSL+ + 
Sbjct: 271 ALGSTVVLRRRFDPEATLEDIAKHKAT-ALVVVPVMLSRILDLGPEVLAKYDTSSLKIIF 329

Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPDECRRWGST-GRLSAGL 371
              + L  +        F   VL   YG TE + A +     P++      T GR   G+
Sbjct: 330 VSGSALSPELATRALEAFGP-VLYNLYGSTEVAFATI---ATPEDLAEAPGTVGRPPKGV 385

Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             KI+D E G+ +P G  G + +      +G
Sbjct: 386 TVKILD-ENGNEVPRGVVGRIFVGNGFPFEG 415

Length = 549

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 78.3 bits (193), Expect = 1e-15
 Identities = 68/224 (30%), Positives = 94/224 (41%), Gaps = 12/224 (5%)

Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA---VMLFTMPYFHIY 247
             DVA I+++SGT    KGV LTH NL A   +      K  SP    VM+  +P FH Y
Sbjct: 182 PEDVAVILFTSGTEKLPKGVPLTHANLLANQRACL----KFFSPKEDDVMMSFLPPFHAY 237

Query: 248 GLFFCFRAAALMETAVVMQRFDL--KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
           G   C     L    VV     L  K +++ ++E +VT    TP     + K        
Sbjct: 238 GFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESC 297

Query: 306 LSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
           L SL  V  G     KD++   A K FP + L Q YG TE +  V      +  +     
Sbjct: 298 LPSLRFVVIGGDAF-KDSLYQEALKTFPHIQLRQGYGTTECSP-VITINTVNSPKHESCV 355

Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408
           G    G++  IV  ET   +  G+ G +  RG ++  G     F
Sbjct: 356 GMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDF 399

Length = 539

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 15/211 (7%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIYGL-- 249
           DVA I ++SGTTG  KG M  HR++ A    +F     + +P  V + + P    +GL  
Sbjct: 148 DVALIGFTSGTTGLPKGTMHFHRDILAI-CDAFPRHVLQPTPDDVFIGSPPLAFTFGLGG 206

Query: 250 --FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
              F  R  A   +AV++++    ++LKA++E R T     P    AM        +D+S
Sbjct: 207 LVLFPLRFGA---SAVLLEQATPPLLLKAIQEHRATILFTAPTAYRAMLIK--VKAFDIS 261

Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL 367
           SL         L       +  +   + ++   G TE    +F +   +E  + G+TG+ 
Sbjct: 262 SLRKCVSAGETLPAKVWQDWYER-TGLKIIDGIGATEMLH-IFIS-ANEENAKPGATGKP 318

Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398
             G EA+IVD + G+ +P G+ G L++RGPT
Sbjct: 319 VPGYEARIVD-DQGNEVPRGEAGRLAVRGPT 348

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 76.8 bits (189), Expect = 4e-15
 Identities = 98/375 (26%), Positives = 152/375 (40%), Gaps = 40/375 (10%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D +A+I      + S+ E  +R ++LA+ L  +  + + DTA V   N  E  I++F
Sbjct: 35  RYPDAIAIICGNR--QWSYRELDQRADNLAAGLTKLG-IKQGDTAVVQLPNIAEFYIVFF 91

Query: 114 SLLSLGVIISPANPVNTESEI---SRQIQLSNPVI----------AFATSSVVHKLAKLK 160
           +LL LGV    A   + +SE+   + QI+ +  +I           FA   +  KL  L 
Sbjct: 92  ALLKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFA-RQLQSKLPTL- 149

Query: 161 HRTILIDSPEFDSMTMSW-NSKH-ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT 218
            R I++     ++    W  S    +        +VA    S G+TG  K +  TH +  
Sbjct: 150 -RNIIVAGQTGEAELFLWLESPAEPVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYY 208

Query: 219 AAVASSFASSPKRVSPAVMLFTMPYFHIY-----GLFFCFRAAALMETAVVMQRFDLKMM 273
            +V  S             L  +P  H Y     G    F A       V+         
Sbjct: 209 YSVRRS-VEICWLTQQTRYLCALPAAHNYPLSSPGALGVFYAGG---CVVLAPDPSPTDC 264

Query: 274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPK 333
              +E  +VT  A+ PP V    +  S    DLSSL+ +  G A        A A + P 
Sbjct: 265 FPLIERHKVTVTALVPPAVALWMQAASKSRADLSSLKLLQVGGAKFSA----AAARRVPA 320

Query: 334 VV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVDPETGDSLPPGKE 389
           V    L Q +G+ E      R   P E   + + GR +S   E ++VD + G+ + PG+ 
Sbjct: 321 VFGCQLQQVFGMAEGLVNYTRLDDPAE-IIFTTQGRPMSPDDEVRVVD-DHGNPVAPGET 378

Query: 390 GELSIRGPTIMKGIF 404
           G L  RGP   +G +
Sbjct: 379 GMLLTRGPYTFRGYY 393

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 75.4 bits (186), Expect = 9e-15
 Identities = 87/388 (22%), Positives = 153/388 (39%), Gaps = 66/388 (17%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
           G  +++ E    + +LA++LQ+   L+K     ++  N ++ P+   ++L  G ++   N
Sbjct: 46  GKAITYGELDELSRALAAWLQS-RGLAKGARVAIMMPNVLQYPVAIAAVLRAGYVVVNVN 104

Query: 127 PVNTESEISRQ---------IQLSNPVIAFATSSVVHKLAKLKHRTILIDS--------- 168
           P+ T  E+  Q         + L N    FA ++V   LAK   + +++ S         
Sbjct: 105 PLYTPRELEHQLKDSGAEAIVVLEN----FA-TTVQQVLAKTAVKHVVVASMGDLLGFKG 159

Query: 169 -------PEFDSMTMSWN--------------SKHELDRAKVCQSDVAAIMYSSGTTGRV 207
                       M  +W+              ++      K+   DVA + Y+ GTTG  
Sbjct: 160 HIVNFVVRRVKKMVPAWSLPGHVRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVS 219

Query: 208 KGVMLTHRNLTAAVASSFA------SSPKRVSPAVMLFTMPYFHIYGLFFCF----RAAA 257
           KG  L HRN+ A V    A          R      +  +P +HI+ L  C     R   
Sbjct: 220 KGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYHIFALTVCGLLGMRTGG 279

Query: 258 LMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAA 317
                ++    D+   +K +++++V        +  A+      D  D S L     G  
Sbjct: 280 R--NILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGM 337

Query: 318 PLGKDTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374
            + +      A ++ ++    + + YGL+E T+ V      D     G+ G      E  
Sbjct: 338 AVQR----PVAERWLEMTGCPITEGYGLSE-TSPVATCNPVDATEFSGTIGLPLPSTEVS 392

Query: 375 IVDPETGDSLPPGKEGELSIRGPTIMKG 402
           I D + G+ LP G+ GE+ IRGP +M G
Sbjct: 393 IRD-DDGNDLPLGEPGEICIRGPQVMAG 419

Length = 557

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 87/393 (22%), Positives = 144/393 (36%), Gaps = 74/393 (18%)

Query: 48  RATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107
           +  L W DDD    I        +F +    +N  A++ + +  + K DT  +      E
Sbjct: 33  KLALIWCDDDGEEKI-------FTFGDLKDYSNKAANFFKALG-IGKGDTVMLTLKRRYE 84

Query: 108 IPILYFSLLSL---GVIISPANPVNTESEISRQIQLSN----------PVIAFATSSVVH 154
               +FS+L+L   G I  PA  + T  +I  +I+ +            V      +   
Sbjct: 85  ---FWFSMLALHKIGAIAIPATHMLTAKDIVYRIEAAGIKMIVCIGEDGVPEHIDEAAPE 141

Query: 155 KLAKLKHRTILIDSPEFDSMTMSWNSKHEL------------DRAKVCQSDVAAIMYSSG 202
             +      +    PE       W    +                  C  D+  + ++SG
Sbjct: 142 CGSPTLLVLVGDPVPE------GWIDFDKEIENASPDFERPTGNDATCNDDILLVYFTSG 195

Query: 203 TTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP--------YFHIYGLFFCFR 254
           TTG  K  M+ H +         A   + V    +  T+         +  +YG +    
Sbjct: 196 TTGMPK--MVEHDHTYPLGHIVTAKYWQNVKEGGLHLTVADTGWGKAVWGKLYGQWIA-- 251

Query: 255 AAALMETAVV---MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET 311
                  AV      +FD K +L+ +E++ VT     P I   + K   +  YDLSSL  
Sbjct: 252 -----GAAVFVYDYDKFDPKNLLEKIEKYGVTTFCAPPTIYRFLIKEDLSK-YDLSSLRY 305

Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR--RWGSTGRLSA 369
                 PL  +    F  +   + L++ +G TE+T     T+        + GS G+ S 
Sbjct: 306 CTTAGEPLNPEVFNTF-KEKTGIKLMEGFGQTETTL----TIATFPWMEPKPGSMGKPSP 360

Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           G +  I+DP+ G S   G+EGE+ IR      G
Sbjct: 361 GYDIDIIDPD-GKSCEVGEEGEIVIR---TSDG 389

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 64/226 (28%), Positives = 102/226 (45%), Gaps = 22/226 (9%)

Query: 195 AAIMYSSGTTGRVKGVMLTHR-NLTAAVASSFASSPKRVSPAVMLFTMPYFHI--YGLFF 251
           A + Y+SGTTG  KGV+ +HR N+  A+ ++   +    +   ML  +P FH   +G+ F
Sbjct: 180 AGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAADTMLPVVPLFHANSWGIAF 239

Query: 252 CFRAAALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL 309
              +A  M T +VM   + D   + + ++  +VT  A  P + + + +    +G  L  L
Sbjct: 240 ---SAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHL 296

Query: 310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES----TAGV----FRTVGPDECRRW 361
           + V CG + + +  I AF      V +  A+G+TE     T       F  +  D     
Sbjct: 297 KMVVCGGSAMPRSMIKAFEDM--GVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDV 354

Query: 362 GST-GRLSAGLEAKIVDPETGDSLP-PGKE-GELSIRGPTIMKGIF 404
               G    G+E KI D   G  LP  GK  G L +RGP +    +
Sbjct: 355 LQKQGYPPFGVEMKITDDA-GKELPWDGKTFGRLKVRGPAVAAAYY 399

Length = 542

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 85/407 (20%), Positives = 135/407 (33%), Gaps = 49/407 (12%)

Query: 32  PPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR 91
            P DA     D ++SL         D VALI+      +S +E     + LA++L     
Sbjct: 1   TPHDA-APRADTLASLLDAHARARPDAVALIDE--DRPLSRAELRALVDRLAAWLAAQG- 56

Query: 92  LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI-----A 146
           + + D   V   N IE  +L+ +   LG  +   N      E++  +             
Sbjct: 57  VRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPG 116

Query: 147 FATSSVVHKLAKLKH-------RTILIDS----------------PEFDSMTMSWNSKHE 183
           F        LA +            ++D                            +   
Sbjct: 117 FKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLFALPDPAPPAAAGER 176

Query: 184 LDRAKVCQSDVAAIMYS-SGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLF 239
                    D  A++++ SGTT   K V+     L     A+A ++   P     AV+L 
Sbjct: 177 AA-----DPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAYGYDPG----AVLLA 227

Query: 240 TMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
            +P+  ++G      A A     V    FD     +A+   RVTH      ++  +    
Sbjct: 228 ALPFCGVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA 287

Query: 300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDEC 358
                D  S       +       + A A     V L   YG +E  A V  +       
Sbjct: 288 GERA-DFPSARLFGFASFAPALGELAALARA-RGVPLTGLYGSSEVQALVALQPATDPVS 345

Query: 359 RRWGSTGRL-SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
            R    GR  S     +  DP+ G  LP G+ GE+ IR P++M+G  
Sbjct: 346 VRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYL 392

Length = 540

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 72.2 bits (178), Expect = 1e-13
 Identities = 103/402 (25%), Positives = 160/402 (39%), Gaps = 89/402 (22%)

Query: 48  RATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE 107
           +  L + D             + ++ E    +N  A+ L+ +  + K D  F+       
Sbjct: 60  KVALRYLDASRK--------EKYTYKELKELSNKFANVLKELG-VEKGDRVFIFMP---R 107

Query: 108 IPILYFSLLS---LGVIISPANPVNTESEISRQIQLSNPVIAFATSS-----VVHKLAKL 159
           IP LYF+LL     G I+ P      E  +  +++ S   +   T +         L  L
Sbjct: 108 IPELYFALLGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSL 167

Query: 160 KHRTILIDSP-EFDSMTMSWNSK-----HELDRAKVCQSDVAAIMYSSGTTGRVKGV--- 210
           KH  +L+    E    T+ +N+       E D     + D A + Y+SG+TG+ KGV   
Sbjct: 168 KH-VLLVGEDVEEGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHV 226

Query: 211 ---MLTHRNLTAAVASSFASS--------PKRVSPAVMLFTMPYFHIYGLFFCFRAAALM 259
              ML H   T                  P  V+             YG+F  +   A  
Sbjct: 227 HNAMLQHY-QTGKYVLDLHEDDVYWCTADPGWVTGTS----------YGIFAPWLNGA-- 273

Query: 260 ETAVVMQ-RFDLKMMLKAVEEFRVTHAAV--TPPIVVAMSKGGSTD---GYDLSSLETVA 313
            T V+   RF  +   + +E+++VT   V  T P  + M  G   D    YDLSSL  + 
Sbjct: 274 -TNVIDGGRFSPERWYRILEDYKVT---VWYTAPTAIRMLMGAGDDLVKKYDLSSLRHIL 329

Query: 314 CGAAPLGKDTIMAFASKFPKVVL--VQAYGL--------TESTAGVFRTVGPDECRRWGS 363
               PL            P+VV   ++ +GL        TE T G+     P    + GS
Sbjct: 330 SVGEPLN-----------PEVVRWGMKVFGLPIHDNWWMTE-TGGIMIANYPAMDIKPGS 377

Query: 364 TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGI 403
            G+   G+EA IVD + G+ LPP + G L+I+   P++M+GI
Sbjct: 378 MGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGI 418

Length = 570

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 53/228 (23%), Positives = 88/228 (38%), Gaps = 37/228 (16%)

Query: 197 IMYSSGTTGRVKGVMLTHRNLTAA---------VASSFASSPKRVS----PAVMLFTMPY 243
           ++Y+ GTTG  KGVM    ++               +     K+V+        L   P 
Sbjct: 8   MLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRFLPACPL 67

Query: 244 FHIYGLFFCFRAAALMETAVVM---QRFDLKMMLKAVEEFRVTHAAVT-----PPIVVAM 295
            H  G +    +A      VV+    +FD   + + VE+ RV    +       P++ A+
Sbjct: 68  MHGAGQWLAL-SALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFARPLLEAL 126

Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG---VFRT 352
              G    YDLSSL  ++   A    +         P + LV A G +E+  G   V R 
Sbjct: 127 EAAG---RYDLSSLRAISSSGAMWSPEVKQGLLELLPNLALVDALGASETGGGGSSVSRA 183

Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG--KEGELSIRGPT 398
            G         TG+   G +  ++D +  + +PPG  + G ++  G  
Sbjct: 184 GGASA------TGKFELGPDTVVLDEDGSE-VPPGSGEVGWIARGGRV 224

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 71.9 bits (177), Expect = 1e-13
 Identities = 86/386 (22%), Positives = 151/386 (39%), Gaps = 78/386 (20%)

Query: 69  RVSFSEFTRRTNSLASYLQN--VTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
            +SF+E   R++++A  L    + R  +   A ++ T S+E   L F+L   G +     
Sbjct: 41  ELSFAELDARSDAIAHGLNAAGIGRGMR---AVLMVTPSLEFFALTFALFKAGAV----- 92

Query: 127 PVNTESEISRQ-----IQLSNP--VIAFATSSVVHKL-----AKLKHRTILIDSPEFDSM 174
           PV  +  +  +     +  + P   I    + +  +L       ++   + +        
Sbjct: 93  PVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRL-VTVGGRLLWGG 151

Query: 175 T-----MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFA 226
           T     +   +      A +   D+AAI+++SG+TG  KGV+ TH    A   A+   + 
Sbjct: 152 TTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDYG 211

Query: 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL--------KMMLKAVE 278
             P  +        +P F ++ LF      AL  T+V+    D           +  A+E
Sbjct: 212 IEPGEID-------LPTFPLFALF----GPALGMTSVI-PDMDPTRPATVDPAKLFAAIE 259

Query: 279 EFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ 338
            + VT+   +P ++  + + G  +G  L SL  V    AP+    I  F +  P    + 
Sbjct: 260 RYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEIL 319

Query: 339 A-YGLTE--------STAGVFRTV-----GPDECRRWGSTGRLSAGLEAKIVD------P 378
             YG TE        S   +F T      G   C      GR   G+E +I+       P
Sbjct: 320 TPYGATEALPISSIESREILFATRAATDNGAGIC-----VGRPVDGVEVRIIAISDAPIP 374

Query: 379 ETGDS--LPPGKEGELSIRGPTIMKG 402
           E  D+  L  G+ GE+ + GP + + 
Sbjct: 375 EWDDALRLATGEIGEIVVAGPMVTRS 400

Length = 552

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 88/358 (24%), Positives = 145/358 (40%), Gaps = 30/358 (8%)

Query: 39  SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA 98
           S+   V+ L   LP  +DD   L         S+ E  R + + A+ L+     ++    
Sbjct: 2   SSAPTVAEL--LLPLAEDDDRGL--YFEDSFTSWREHIRGSAARAAALRARLDPTRPPHV 57

Query: 99  FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK 158
            VL  N+ E  +L  +    G++    NP    + ++R I  ++  +    S+    L  
Sbjct: 58  GVLLDNTPEFSLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDG 117

Query: 159 LKH--RTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
           L    R I +DSP +    ++ +   E         D+  ++++SGT+G  K V  THR 
Sbjct: 118 LDPGVRVINVDSPAWAD-ELAAHRDAEPPFRVADPDDLFMLIFTSGTSGDPKAVRCTHRK 176

Query: 217 LTAA---VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM-QRFDLKM 272
           + +A   +A  F   P  V       +MP FH   +   +  A     ++ + ++F    
Sbjct: 177 VASAGVMLAQRFGLGPDDVC----YVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASG 232

Query: 273 MLKAVEEFRVTHAA-VTPPIVVAMSKGGSTDGYDLSSLETVAC--GAAPLGKDTIMAFAS 329
            L  V  +  T+A  V  P+   ++     D  D + L  V    GA       I  FA 
Sbjct: 233 FLPDVRRYGATYANYVGKPLSYVLATPERPDDAD-NPLRIVYGNEGAPG----DIARFAR 287

Query: 330 KFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG 387
           +F   V+V  +G TE    + RT         G+ G L  G+   IVDP+TG   PP 
Sbjct: 288 RF-GCVVVDGFGSTEGGVAITRTPDTPP----GALGPLPPGV--AIVDPDTGTECPPA 338

Length = 529

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 89/388 (22%), Positives = 139/388 (35%), Gaps = 64/388 (16%)

Query: 64  SVTGLRV-SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVII 122
           +++G R  +  EF     SLA+ L  +  L   D   + + NS        ++   G I+
Sbjct: 26  TISGNRRRTGHEFVDGVLSLAAGLLRLG-LRNGDVVAIAALNSDLYLEWLLAVACAGGIV 84

Query: 123 SPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTI-------LIDSP------ 169
           +P N   +  E    + L  PV+     +      +L++  +        ++SP      
Sbjct: 85  APLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFI 144

Query: 170 ---EFDSMTMSWN---SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT----A 219
               F +  M         ELD A     D   I ++SGTTGR KGV ++H  L     A
Sbjct: 145 FLNSFLTTEMLKQRALGTTELDYAWA-PDDAVLICFTSGTTGRPKGVTISHSALIVQSLA 203

Query: 220 AVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETA--VVMQRFDLKMMLKAV 277
            +A             V L T P  HI GL      A LM  A  V++ +FD K  L+A+
Sbjct: 204 KIAIVGYGEDD-----VYLHTAPLCHIGGLSSAL--AMLMVGACHVLLPKFDAKAALQAI 256

Query: 278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLS--SLETVACGAAPLGKDTIMAFASKFPKVV 335
           ++  VT     P ++  +              S+  +  G   L    +      FP   
Sbjct: 257 KQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAK 316

Query: 336 LVQAYGLTES------------TAGVFRTVGPDECRRWGSTGRLSAG---------LEAK 374
           L  AYG+TE+            T    +       +   S+     G         +E K
Sbjct: 317 LFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELK 376

Query: 375 IVDPETGDSLPPGKEGELSIRGPTIMKG 402
           I   E        + G +  RGP +M G
Sbjct: 377 IGLDE------SSRVGRILTRGPHVMLG 398

Length = 563

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 71.1 bits (175), Expect = 3e-13
 Identities = 65/230 (28%), Positives = 100/230 (43%), Gaps = 49/230 (21%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF-TMPYFHIYGLFF 251
           D A I+++SG+ G  KGV+L+HRNL A  A   A      SP   +F  +P FH +GL  
Sbjct: 794 DPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARID--FSPEDKVFNALPVFHSFGL-- 849

Query: 252 CFRAAALMETAVVMQRFDLKMMLKAVEEF---RVTHAAVTPPIVVAMSKGGST------- 301
                 ++             +L  V+ F      H  + P ++       +T       
Sbjct: 850 --TGGLVL------------PLLSGVKVFLYPSPLHYRIIPELIYDT---NATILFGTDT 892

Query: 302 ---------DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
                      YD  SL  V  GA  + ++T   +  KF  + +++ YG+TE TA V   
Sbjct: 893 FLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGYGVTE-TAPVIAL 950

Query: 353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             P   +  G+ GRL  G+E + ++P  G  +  G  G L +RGP +M G
Sbjct: 951 NTPMHNK-AGTVGRLLPGIEYR-LEPVPG--IDEG--GRLFVRGPNVMLG 994

Length = 1140

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 70.3 bits (173), Expect = 5e-13
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 151 SVVHKLAKLKHRTILIDSPEFDSM----TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGR 206
           ++ + L + +   +  D+ +  S      +   +K      K    D+A IMY+SGTTG 
Sbjct: 68  AIEYILNETEISIVFCDAVKVYSFEELEELGKKNKVPPTPPK--PEDLATIMYTSGTTGN 125

Query: 207 VKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFF 251
            KGVMLTH N+ A VA      P+ + P  V +  +P  HI+    
Sbjct: 126 PKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYISYLPLAHIFERVV 171

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 69.6 bits (171), Expect = 7e-13
 Identities = 96/426 (22%), Positives = 164/426 (38%), Gaps = 82/426 (19%)

Query: 25  LRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLAS 84
           LR    L P+DA  + +DY           + D   +  ++T     +S+  RRT ++A 
Sbjct: 7   LRERASLQPDDAAFTFIDY-----------EQDPAGVAETLT-----WSQLYRRTLNVAE 50

Query: 85  YLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI---ISPANPVNTESEISRQIQLS 141
            L+     S  D A +L+   +E  + +   L  G+I   +S       +  +S  ++ +
Sbjct: 51  ELRRHG--STGDRAVILAPQGLEYIVAFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDT 108

Query: 142 NPVIAFATSSVVHKLAKLKHR--------TILIDSPEFDSMTMSWNSKHELDRAKVCQSD 193
           +P +   TS+VV  + +             I +D  + DS           D        
Sbjct: 109 SPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLDLDS-------PRGSDARPRDLPS 161

Query: 194 VAAIMYSSGTTGRVKGVMLTHRNLTA----AVASSFASSPKRVSPAVMLFT-MPYFH--- 245
            A + Y+SG+T    GVM++HRN+ A     ++  F  +     P   + + +P++H   
Sbjct: 162 TAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMG 221

Query: 246 -IYGLF---FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
            + G+         A L      +QR    M L A        AA      +A+ K    
Sbjct: 222 LVLGVCAPILGGCPAVLTSPVAFLQRPARWMQLLA-SNPHAFSAAPNFAFELAVRKTSDD 280

Query: 302 D--GYDLSSLETVACGAAPLGKDTIMAFASKF-----PKVVLVQAYGLTESTAGVF---R 351
           D  G DL  +  +  G+  +   T+  FA +F      +  +  +YGL E+T  V+   R
Sbjct: 281 DMAGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEAT--VYVATR 338

Query: 352 TVG---------PDE--------CRRWGSTGRLSAGL----EAKIVDPETGDSLPPGKEG 390
             G          ++        C   G T  +S G       +IVDP+T    P G  G
Sbjct: 339 EPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPTVRIVDPDTCIECPAGTVG 398

Query: 391 ELSIRG 396
           E+ + G
Sbjct: 399 EIWVHG 404

Length = 578

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 68.9 bits (169), Expect = 1e-12
 Identities = 57/237 (24%), Positives = 92/237 (38%), Gaps = 38/237 (16%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYG 248
            D AAI+++SG+TG  KGV+ THR   A   A+ S +               +  F  + 
Sbjct: 85  DDPAAILFTSGSTGPPKGVVYTHRTFAAQIDALRSLYGIREGDRD-------LAAFPPFA 137

Query: 249 LFFCFRAAALMETAVV--MQ-----RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
           LF      AL  T V+  M        D   + +A+ E   +    +P ++  +++    
Sbjct: 138 LF----GPALGVTTVIPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVARYCEE 193

Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKF-PKVVLVQAYGLTE-------STAGVFRTV 353
           +G  L SL  V    AP+  D +  F +   P+  +   YG TE           V    
Sbjct: 194 NGIQLPSLRRVLSAGAPVPPDLLRRFVANLMPEAEIHTPYGATEALPVASIEGREVLAES 253

Query: 354 GPDECRRWGS-TGRLSAGLEAKIV----DPETGDS----LPPGKEGELSIRGPTIMK 401
                   G   G    G++ +I+     P         LPPG+ GE+ + GP + +
Sbjct: 254 AEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHVTR 310

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 78/369 (21%), Positives = 136/369 (36%), Gaps = 57/369 (15%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D +AL+       ++++E   R N LA  L+    +   D   +L   S E+ +   ++L
Sbjct: 2   DAIALVYG--DRSLTYAELNERANRLARRLRA-RGVGPGDVVALLLERSPELVVAILAIL 58

Query: 117 SLG---VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
             G   V + PA P    + +         ++   + + + +  +L    +  +    D 
Sbjct: 59  KAGAAYVPLDPAYPAERLAFMLEDSGARV-LLTDESLAPLARADQLPLVILEEELDAED- 116

Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA-AVASSFASSPKRV 232
                          V   D+A +MY+SG+TGR KGV + HR +      +++      +
Sbjct: 117 --------AGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVVRLVRNTNYI----AL 164

Query: 233 SPA-VMLFTMPY------FHIYGLFFCFRAAALMETA--VVMQR---FDLKMMLKAVEEF 280
            P    L   P       F I+G        AL+     V++ +    D   + + + E 
Sbjct: 165 DPDDRFLQLSPLSFDASTFEIWG--------ALLNGGRLVLIDKETLLDPDRLARLIAEQ 216

Query: 281 RVTHAAVTPPI---VVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
            VT   +T  +   +V        D   L+ L  +  G   L    +    +  P + L+
Sbjct: 217 GVTVLWLTAALFNQLVD------EDPEALAGLRQLLVGGDVLSPAHVRRVLAACPGLRLI 270

Query: 338 QAYGLTESTAGVFRTVGPDECRRWGST----GRLSAGLEAKIVDPETGDSLPPGKEGELS 393
             YG TE+T   F T          +     GR        I+D E G  +P G  GEL 
Sbjct: 271 NGYGPTENT--TFSTCHVITRLDEAADSIPIGRPIPNTTVYILD-EEGQPVPIGVPGELY 327

Query: 394 IRGPTIMKG 402
           + G  +  G
Sbjct: 328 VGGDGLALG 336

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 68.8 bits (168), Expect = 2e-12
 Identities = 71/229 (31%), Positives = 109/229 (47%), Gaps = 31/229 (13%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS---SPKRVSPAVMLFTMPYFHIYGL 249
           D A IM++ GTTG  K V  TH N+ ++V +       SP+  + AVM    P +H +GL
Sbjct: 177 DDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGYRLSPRDATVAVM----PLYHGHGL 232

Query: 250 FFCFRAAALMET-----AVVMQ---RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
                 AAL+ T     AV++    RF        ++    T     P I   + +  +T
Sbjct: 233 I-----AALLATLASGGAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAAT 287

Query: 302 D--GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT----VGP 355
           +  G   ++L  +   +APL  +T  A  ++F   V V A+G+TE+T  V  T    +G 
Sbjct: 288 EPSGRKPAALRFIRSCSAPLTAETAQALQTEFAAPV-VCAFGMTEATHQVTTTQIEGIGQ 346

Query: 356 DECRRW--GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            E      G  GR S G + +IV  + G  LP G  GE+ +RG T+++G
Sbjct: 347 TENPVVSTGLVGR-STGAQIRIVGSD-GLPLPAGAVGEVWLRGTTVVRG 393

Length = 534

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 103/387 (26%), Positives = 158/387 (40%), Gaps = 62/387 (16%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
              D +A+I      + S+ E  + +++LA  L+    +   DTA V   N  E  I +F
Sbjct: 35  AASDAIAVICG--ERQFSYRELNQASDNLACSLRR-QGIKPGDTALVQLGNVAEFYITFF 91

Query: 114 SLLSLGVIISPANPVNT-----ESEIS---RQIQLSNP--VIA------FATSSVVHKLA 157
           +LL LGV      PVN       SE++    QI+   P  +IA      F+    ++ L 
Sbjct: 92  ALLKLGVA-----PVNALFSHQRSELNAYASQIE---PALLIADRQHALFSDDDFLNTLV 143

Query: 158 K----LKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSD-VAAIMYSSGTTGRVKGVML 212
                L+   +L D  E  S+  + N   E   A    +D VA    S G+TG  K +  
Sbjct: 144 AEHSSLRVVLLLNDDGEH-SLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPR 202

Query: 213 THRNLTAAVASS-----FASSPKRVS--PAVMLFTMPYFHIYGLFFCFRAAALMETAVVM 265
           TH +   +V  S     F    + +   PA   + M      G+F       L       
Sbjct: 203 THNDYYYSVRRSVEICGFTPQTRYLCALPAAHNYPMSSPGALGVFLAGGTVVLAPDPSAT 262

Query: 266 QRFDLKMMLKAVEEFRVTHAAVTPPIVV----AMSKGGSTDGYDLSSLETVACGAAPLGK 321
             F L      +E+ +V   A+ PP V     A+++GGS     L+SL+ +  G A L +
Sbjct: 263 LCFPL------IEKHQVNVTALVPPAVSLWLQAIAEGGS--RAQLASLKLLQVGGARLSE 314

Query: 322 DTIMAFASKFPKVV---LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVD 377
                 A + P  +   L Q +G+ E      R    DE R + + GR +S   E  + D
Sbjct: 315 ----TLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDE-RIFTTQGRPMSPDDEVWVAD 369

Query: 378 PETGDSLPPGKEGELSIRGPTIMKGIF 404
              G+ LP G+ G L  RGP   +G +
Sbjct: 370 -ADGNPLPQGEVGRLMTRGPYTFRGYY 395

Length = 536

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 67.0 bits (163), Expect = 5e-12
 Identities = 98/347 (28%), Positives = 152/347 (43%), Gaps = 22/347 (6%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D  A+I + TG +VS+ +    + +LA  L +   L   D   +LS NS E  ++ ++ L
Sbjct: 12  DRPAVIVAETGEQVSYRQLDDDSAALARVLYDAG-LRTGDVVALLSDNSPEALVVLWAAL 70

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS--PEFDSM 174
             G+ I+  N   T  E    +  S   +  A++++    AK+     L  S   E D  
Sbjct: 71  RSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGF 130

Query: 175 TMSWNSKHELDRAKVCQSDVAAIM-YSSGTTGRVKGVM--LTHRNLTA------AVASSF 225
             S+ +       ++ +    A+M YSSGTTG  KG+   L  R++ A      A+A +F
Sbjct: 131 G-SFEAALAGAGPRLTEQPCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAF 189

Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
                     +   + P +H   L +C    AL  T V+ +RFD +  L  VE +R+T  
Sbjct: 190 YDI---SESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERYRITVT 246

Query: 286 AVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
            + P + V + K  +     YD+SSL  V   AAP   D   A       +V  + Y  T
Sbjct: 247 QMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVY-EYYSST 305

Query: 344 ESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEG 390
           E+    F    PD     GS GR   G +  I D + G+ LP G+ G
Sbjct: 306 EAHGMTF-IDSPDWLAHPGSVGRSVLG-DLHICD-DDGNELPAGRIG 349

Length = 501

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 58/212 (27%), Positives = 93/212 (43%), Gaps = 14/212 (6%)

Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA 256
           I+ +SGTTG  KG   +       + +    +P R     ++   P FH +G F     A
Sbjct: 201 ILLTSGTTGTPKGARRSGPGGIGTLKAILDRTPWRAEEPTVI-VAPMFHAWG-FSQLVLA 258

Query: 257 ALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPP----IVVAMSKGGSTDGYDLSSLET 311
           A +   +V +R FD +  L  ++  R T  AV P     I+   ++    + Y   SL  
Sbjct: 259 ASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEV--RNRYSGRSLRF 316

Query: 312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST-GRLSAG 370
            A   + +  D ++AF  +F   V+   Y  TE  AG+  T  P + R    T GR + G
Sbjct: 317 AAASGSRMRPDVVIAFMDQFGD-VIYNNYNATE--AGMIATATPADLRAAPDTAGRPAEG 373

Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            E +I+D +    +P G+ G + +R  T   G
Sbjct: 374 TEIRILDQD-FREVPTGEVGTIFVRNDTQFDG 404

Length = 537

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 66/270 (24%), Positives = 109/270 (40%), Gaps = 62/270 (22%)

Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFT-MPYFH 245
            ++D+  IMY+SGTTG  KGV+LT+R + A V S+      + +  +     F+ +P  H
Sbjct: 218 QKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPLAH 277

Query: 246 IY----GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP--------IVV 293
           +Y      +   + A+     +   + D++ +++ V+  + T     P         I+ 
Sbjct: 278 VYDQVIETYCISKGAS-----IGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQ 332

Query: 294 AMSKGGSTD--------GYDLSSLET-----------------------------VACGA 316
            +S GG            Y L +L                               +  GA
Sbjct: 333 KISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGA 392

Query: 317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIV 376
           APL +  +  F       VL Q YGLTES  G F ++  +     G+ G     +EA++ 
Sbjct: 393 APLPRH-VEEFLRVTSCSVLSQGYGLTESCGGCFTSIA-NVFSMVGTVGVPMTTIEARLE 450

Query: 377 D-PETG-DSLPPGKEGELSIRGPTIMKGIF 404
             PE G D+L     GE+ +RG T+  G  
Sbjct: 451 SVPEMGYDALSDVPRGEICLRGNTLFSGYH 480

Length = 660

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 66.5 bits (162), Expect = 1e-11
 Identities = 72/339 (21%), Positives = 131/339 (38%), Gaps = 15/339 (4%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
            + ++E  RR N LA  L     +  +    V    SIE+ +   ++L  G    P +P 
Sbjct: 536 TLDYAELNRRANRLAHALIERG-VGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDPE 594

Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLA-KLKHRTILIDSPEFDSMTMSWNSKH--ELD 185
                ++  ++ S   +  + S +  KL      + + +D P       +W   +  E  
Sbjct: 595 YPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRPA------AWLEGYSEENP 648

Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF- 244
             ++   ++A ++Y+SG+TG+ KG    HR L+  +     +    V   V+  T   F 
Sbjct: 649 GTELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAYGLGVGDTVLQKTPFSFD 708

Query: 245 -HIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG 303
             ++  F+   + A +  A      D   +++ +    V      P ++ A  +      
Sbjct: 709 VSVWEFFWPLMSGARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDEDVA- 767

Query: 304 YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS 363
              +SL  + C    L  D      +K P+  L   YG TE+   V      +E      
Sbjct: 768 -SCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVP 826

Query: 364 TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            GR  A L   I+D    + +P G  GEL + G  + +G
Sbjct: 827 IGRPIANLACYILDAN-LEPVPVGVLGELYLAGRGLARG 864

Length = 5163

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 78/345 (22%), Positives = 137/345 (39%), Gaps = 25/345 (7%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
            +S++E  R+ N LA  L              +   SIE+ +   ++L  G    P +P 
Sbjct: 537 VLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVE-RSIEMVVGLLAVLKAGGAYVPLDPE 595

Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKH----RTILIDSPEFDSMTMSWNSKHEL 184
             +  ++  +  S   +    S   H LA+L      R++ +D P      +   S H  
Sbjct: 596 YPQDRLAYMLDDSGVRLLLTQS---HLLAQLPVPAGLRSLCLDEPA---DLLCGYSGHNP 649

Query: 185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF 244
           + A    + +A ++Y+SG+TG+ KGV ++H  L   V             ++++ +   F
Sbjct: 650 EVALDPDN-LAYVIYTSGSTGQPKGVAISHGALANYVCVIAERLQLAADDSMLMVSTFAF 708

Query: 245 HIYGLFFCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
            +      F A A   T  ++      D +     + +  VT   + P  + A+ +    
Sbjct: 709 DLGVTEL-FGALASGATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASRV 767

Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP--DECR 359
                     + CG   L  D +    +  P   L+  YG TE+T GV  +     DE R
Sbjct: 768 AL--PRPQRALVCGGEALQVDLLARVRALGPGARLINHYGPTETTVGV--STYELSDEER 823

Query: 360 RWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            +G+   G+  A L   I+D    + +P G  GEL I G  + +G
Sbjct: 824 DFGNVPIGQPLANLGLYILDHYL-NPVPVGVVGELYIGGAGLARG 867

Length = 3956

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 60/242 (24%), Positives = 98/242 (40%), Gaps = 54/242 (22%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251
            D+A I+Y+SGTTG+ KGVML+      A A              +L  +P  HI     
Sbjct: 137 EDLATIVYTSGTTGQPKGVMLSFGAFAFA-AQGTIEIIGLTPNDRLLSYLPLAHIA---- 191

Query: 252 CFRAAALMETAVV-----------MQRF--DLKM----MLKAV----EEFRV-THAAVTP 289
                 ++E   +           +  F  DL+     +  +V     +F+    A + P
Sbjct: 192 ---ERVIVEGGSLYSGAEVFFVESLDTFAADLQRARPTVFFSVPRLWTKFQQGILAKLPP 248

Query: 290 ---------PIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY 340
                    PI+ ++ K     G  L        GAAP+    ++A+  K   + + + Y
Sbjct: 249 EKLNLLLKIPILSSLVKKKILKGLGLDQARLAGSGAAPMPPA-LIAWYRKL-GLPICEGY 306

Query: 341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM 400
           G+TE+ A  + T+     RR G+ G+   G+E KI +           +GE+ IR P +M
Sbjct: 307 GMTENFA--YSTLNYPGDRRIGTVGKPIPGVELKISE-----------DGEILIRSPGLM 353

Query: 401 KG 402
            G
Sbjct: 354 SG 355

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 64.8 bits (158), Expect = 5e-11
 Identities = 80/401 (19%), Positives = 147/401 (36%), Gaps = 51/401 (12%)

Query: 23   HSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSL 82
            H+        P +  +     + +  A  P    +  AL+      ++S++E  RR N L
Sbjct: 3082 HAWNATAAAYPSERLV--HQLIEAQVARTP----EAPALV--FGDQQLSYAELNRRANRL 3133

Query: 83   ASYLQNVTRLSKNDTAF-VLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
            A  L  +      D    V    S+E+ +   ++L  G    P +P      ++  I+ S
Sbjct: 3134 AHRL--IAIGVGPDVLVGVAVERSVEMIVALLAVLKAGGAYVPLDPEYPRERLAYMIEDS 3191

Query: 142  NPVIAFATSSVVHKLAKLKH-RTILIDSPEFDSMTMSWNSKHELDRAKVCQSD-VAAIMY 199
               +    + ++ +L        + +D        +  N   E + +     + +A ++Y
Sbjct: 3192 GVKLLLTQAHLLEQLPAPAGDTALTLDR-------LDLNGYSENNPSTRVMGENLAYVIY 3244

Query: 200  SSGTTGRVKGVMLTH---RNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA 256
            +SG+TG+ KGV + H    N    +A ++       +  V+LF           F F  A
Sbjct: 3245 TSGSTGKPKGVGVRHGALANHLCWIAEAYELD---ANDRVLLFMS---------FSFDGA 3292

Query: 257  ------ALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
                   L+    ++ R    +D + + +A+   R++ A   P  +   ++     G D 
Sbjct: 3293 QERFLWTLICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADC 3350

Query: 307  SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST- 364
            +SL+    G   +          K     L   YG TE+   V     G D         
Sbjct: 3351 ASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAP 3410

Query: 365  -GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
             GR  AG    ++D    + +P G  GEL I G  + +G  
Sbjct: 3411 IGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYH 3450

Length = 3956

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 63.0 bits (154), Expect = 7e-11
 Identities = 70/347 (20%), Positives = 112/347 (32%), Gaps = 83/347 (23%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
             R+S++EF    N  A  L+ +  + K D   +L  N  E  + + +L  LG + +  N
Sbjct: 1   DRRLSYAEFNAWANRYAHALRAL-GVKKGDVVALLMENRPEYLLAWLALAKLGAVAALIN 59

Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDR 186
                  ++  I +S+                                            
Sbjct: 60  TTQRGEVLAHCINVSD-------------------------------------------- 75

Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHI 246
           A+    D A  +Y+SGTTG  K  +++HR    A  + F          V+   +P +H 
Sbjct: 76  ARAVIVDPAFYIYTSGTTGLPKAAIMSHRRWLRA-GAVFGGLGLLKPDDVLYLCLPLYHS 134

Query: 247 YGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
             L   + +A     ++ ++R F        V  +  T         V     G    Y 
Sbjct: 135 NALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAF-----QYV-----GELCRYL 184

Query: 306 LSSLE---------TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
           L+  E             G   L  D    F  +F    +V+ YG TE   G        
Sbjct: 185 LNQPEKPDDRDHPLRKIIGNG-LRPDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNKP 243

Query: 357 ECRRWGSTGRL-SAGLEAKIVDPETGDSL----------PPGKEGEL 392
                G+ GRL  A +     D ET + +          PPG+ G L
Sbjct: 244 -----GAVGRLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLL 285

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 64.0 bits (156), Expect = 8e-11
 Identities = 90/385 (23%), Positives = 152/385 (39%), Gaps = 61/385 (15%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
           G+ +S+ +   R  ++A+ LQ   R S  D A +L  +  +    +F  L  GVI  PA 
Sbjct: 38  GVVLSYRDLDLRARTIAAALQ--ARASFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAY 95

Query: 127 PVNTESEISRQ---------IQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-TM 176
           P     E +R+         I  + P +    + +   L +++      ++PE   + T+
Sbjct: 96  P----PESARRHHQERLLSIIADAEPRLLLTVADLRDSLLQMEELAA-ANAPELLCVDTL 150

Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVS 233
                       +   D+A + Y+SG+T   KGV ++H NL A    +   F      ++
Sbjct: 151 DPALAEAWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVANEQLIRHGFGID---LN 207

Query: 234 P-AVMLFTMPYFHIYGL-------FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
           P  V++  +P +H  GL        F      LM  A  ++R  L+  L+A+ E+  T +
Sbjct: 208 PDDVIVSWLPLYHDMGLIGGLLQPIFSGVPCVLMSPAYFLER-PLR-WLEAISEYGGTIS 265

Query: 286 A---VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKV-----VLV 337
                   +        + +  DLS       G+ P+ +D++  FA KF           
Sbjct: 266 GGPDFAYRLCSERVSESALERLDLSRWRVAYSGSEPIRQDSLERFAEKFAACGFDPDSFF 325

Query: 338 QAYGLTEST---AGVFRTVGPDECRRWG-----------------STGRLSAGLEAKIVD 377
            +YGL E+T   +G  R  G                         S GR   G    IVD
Sbjct: 326 ASYGLAEATLFVSGGRRGQGIPALELDAEALARNRAEPGTGSVLMSCGRSQPGHAVLIVD 385

Query: 378 PETGDSLPPGKEGELSIRGPTIMKG 402
           P++ + L   + GE+   GP+I  G
Sbjct: 386 PQSLEVLGDNRVGEIWASGPSIAHG 410

Length = 4334

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 21/222 (9%)

Query: 199 YSSGTTGRVKGVMLTHRNLTA-AVASSFASSPKRVSPAVMLFTMPYFHI--YGLFFCFRA 255
           Y+SGTTG  KG + +HR+    A  ++   +    +   +L  +P FH+  +GL +   +
Sbjct: 183 YTSGTTGNPKGALYSHRSTVLHAYGAALPDAMGLSARDAVLPVVPMFHVNAWGLPY---S 239

Query: 256 AALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVA 313
           A L    +V+     D K + + +E  RVT +A  P + + +       G   S+L    
Sbjct: 240 APLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTV 299

Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTV-------GPDECRR-WGST 364
            G +      I  F  ++  V ++ A+G+TE S  G    +         DE R+     
Sbjct: 300 IGGSACPPAMIRTFEDEY-GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQ 358

Query: 365 GRLSAGLEAKIVDPETGDSLP-PGKE-GELSIRGPTIMKGIF 404
           GR+  G++ KIV  + G  LP  GK  G+L +RGP ++   F
Sbjct: 359 GRVIYGVDMKIVGDD-GRELPWDGKAFGDLQVRGPWVIDRYF 399

Length = 539

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 61.6 bits (149), Expect = 3e-10
 Identities = 71/271 (26%), Positives = 113/271 (41%), Gaps = 66/271 (24%)

Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRN---LTAAVASSFASSPKRVSPA-VMLFTMPYFHI 246
           +SD+  IMY+SGTTG  KGVM+++ +   L A V     S+   ++   V L  +P  HI
Sbjct: 222 KSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAHI 281

Query: 247 YGLFF--CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV--------VAMS 296
           +      CF        A+   R D+K++++ + E + T     P ++          +S
Sbjct: 282 FDRVIEECFIQHG---AAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLS 338

Query: 297 KGG--------STDGYDLSSLET-----------------------------VACGAAPL 319
            GG        S   Y   +++                              +  GAAPL
Sbjct: 339 DGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPL 398

Query: 320 GKDTIMAFASKFPKVV----LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKI 375
                 +    F +VV    ++Q YGLTES AG F ++ PDE    G+ G     ++ ++
Sbjct: 399 A-----SHVESFLRVVACCHVLQGYGLTESCAGTFVSL-PDELDMLGTVGPPVPNVDIRL 452

Query: 376 VD-PETG-DSLPPGKEGELSIRGPTIMKGIF 404
              PE   D+L     GE+ IRG T+  G +
Sbjct: 453 ESVPEMEYDALASTPRGEICIRGKTLFSGYY 483

Length = 666

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 75/359 (20%), Positives = 129/359 (35%), Gaps = 34/359 (9%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D  A+I+      +++ E  RR N++A+ L+    ++  D   V+     E  +    +L
Sbjct: 2   DATAVIDG--AGTLTYGELARRANAIAAALRAA-GVAPGDLVAVVMPKGWEQIVAVLGIL 58

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
             G    P +P       +  +  +          +           +  D+   +S   
Sbjct: 59  LAGAAYVPIDPDQPAERRAAILARAGARAVLTDPGLAQPEEAPDLLVVADDAAAAESP-- 116

Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVS 233
                      +V   D+A ++++SG+TG  KGVM+THR   N    V   F   P    
Sbjct: 117 ------APPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRAAVNTILDVNRRFGVGPADRV 170

Query: 234 PAV--MLFTMPYFHIYGLFFCFRAAALMETAVVM----QRFDLKMMLKAVEEFRVTHAAV 287
            A+  + F +  + I+G      A A    A+V+    +R D     + V+   VT    
Sbjct: 171 LALSALHFDLSVYDIFGA---LSAGA----ALVLPDEARRRDPDHWAELVQRHGVTVWNS 223

Query: 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST- 346
            P ++  +          L SL  V      +  D      +  P   LV   G TE++ 
Sbjct: 224 VPALMDMLLTYAEDAARLLPSLRLVMLSGDWIPLDLPRRLRALAPGARLVSLGGATEASI 283

Query: 347 -AGVFRTVGPDECRRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            +  +     D    W S   G+     +  ++D E G   P    GEL I G  +  G
Sbjct: 284 WSIYYPIDDVDP--DWRSIPYGKPLPNQKFYVLD-EDGRDCPDWVPGELYIGGVGVALG 339

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 69/228 (30%), Positives = 99/228 (43%), Gaps = 32/228 (14%)

Query: 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRA 255
           A+ Y+SGTT   KGV+L HR     +A S A        AV L+T+P FH  G  F +  
Sbjct: 199 ALGYTSGTTASPKGVVLHHRG-AYLMALSNALIWGMNEGAVYLWTLPMFHCNGWCFTWTL 257

Query: 256 AALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY-DLSSLETV-A 313
           AAL  T + +++   K +  A+  + VTH    P ++  +     ++    L  +  V  
Sbjct: 258 AALCGTNICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMT 317

Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWG---------ST 364
            GAAP      + FA       +   YGL+E       T GP     W            
Sbjct: 318 AGAAP---PPSVLFAMSEKGFRVTHTYGLSE-------TYGPSTVCAWKPEWDSLPPEEQ 367

Query: 365 GRLSA-------GLEA-KIVDPETGDSLPP-GKE-GELSIRGPTIMKG 402
            RL+A       GLE   +VD +T   +P  GK  GE+ +RG  +MKG
Sbjct: 368 ARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKG 415

Length = 567

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 60.5 bits (147), Expect = 7e-10
 Identities = 27/58 (46%), Positives = 34/58 (58%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
           +D+A IMY+SG+TG  KGVM+TH N+ A VA      PK     V L  +P  HI  L
Sbjct: 250 NDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHILEL 307

Length = 696

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 33/92 (35%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374
           G APL  DT   F        ++Q YGLTE+ AG   T+        G  G      E K
Sbjct: 277 GGAPLSPDT-QEFLRVALGCPVLQGYGLTETCAGG--TLSDPGDTTTGHVGPPLPCCEIK 333

Query: 375 IVD-PETG-DSLPPGKEGELSIRGPTIMKGIF 404
           +VD PE G  +      GE+ IRGP + KG +
Sbjct: 334 LVDVPEMGYFAKDDPPRGEICIRGPNVFKGYY 365

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 12/219 (5%)

Query: 193  DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF- 251
            ++A ++Y+SG+TGR KGV ++H +L   + ++           V+ F    F        
Sbjct: 4695 NLAYVIYTSGSTGRPKGVAVSHGSLVNHLHATGERYELTPDDRVLQFMSFSFDGSHEGLY 4754

Query: 252  ---CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
                  A+ ++        +D + +   + E RVT     P  +  +++    DG +  S
Sbjct: 4755 HPLINGASVVIRDD---SLWDPERLYAEIHEHRVTVLVFPPVYLQQLAEHAERDG-EPPS 4810

Query: 309  LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV--FRTVGPDEC-RRWGSTG 365
            L     G   + + +          V L   YG TE+T  V  ++    D C   +   G
Sbjct: 4811 LRVYCFGGEAVAQASYDLAWRALKPVYLFNGYGPTETTVTVLLWKARDGDACGAAYMPIG 4870

Query: 366  RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
                     ++D +  + LP G  GEL + G  + +G  
Sbjct: 4871 TPLGNRSGYVLDGQ-LNPLPVGVAGELYLGGEGVARGYL 4908

Length = 5163

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 75/346 (21%), Positives = 123/346 (35%), Gaps = 84/346 (24%)

Query: 70  VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
            S+++ ++R+N +A++L+    + + D   ++  N  E+     + + LG ++ PA  + 
Sbjct: 1   YSYAQLSKRSNRVANFLRK-HGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLL 59

Query: 130 TESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKV 189
           T +++  +     P    A                                     RA  
Sbjct: 60  TPADLRDRFSRGKPKAIVADE----------------------------------TRAD- 84

Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA-------------SSPKRVSPAV 236
              D   + ++SGTTG  K V+ TH +      S+               SSP     A 
Sbjct: 85  ---DPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDIHLNISSPGWAKHA- 140

Query: 237 MLFTMPYFHIYGLFFCFRAAALMETAVVM---QRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
                        +  F A       V      RFD +  L A+E+F VT     PP V 
Sbjct: 141 -------------WSSFFAPWNAGATVFGINYPRFDARRYLGALEKFGVT-TFCAPPTVW 186

Query: 294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV---- 349
            M        YD+   E V+ G  PL  + I      +  + +   YG TE+TA +    
Sbjct: 187 RMFIQQDLAQYDVRLREAVSAG-EPLNPEVIERVKKAW-GLTIRDGYGQTETTAMIGNSP 244

Query: 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395
            + V P      GS GR   G    ++D E      P  EGE+++ 
Sbjct: 245 GQKVKP------GSMGRPLPGYRVVLLDDE--GKEIPVTEGEIALD 282

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 75/357 (21%), Positives = 141/357 (39%), Gaps = 26/357 (7%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
              A I+ ++ L  S+ E   +   L + L+ +    +     ++  + ++ PI +   +
Sbjct: 20  GKTAFIDDISSL--SYGELEAQVRRLGAALRRLGVKREERVLLLM-LDGVDFPIAFLGAI 76

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSS-------VVHKLAKLKHRTILID-- 167
             G++    N + T  + +  ++ S   + F +          + K   L+HR ++    
Sbjct: 77  RAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPE 136

Query: 168 SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS 227
           + E     +      +   A     D A  +YSSG+TG  KGV+ TH N     A  +A 
Sbjct: 137 AGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPY-WTAELYAR 195

Query: 228 SPKRVSPAVMLFTMP-YFHIYGL----FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFR 281
           +   +    ++F+    F  YGL     F     A   T V+M +R     +   +   +
Sbjct: 196 NTLGIREDDVVFSAAKLFFAYGLGNALTFPMSVGA---TTVLMGERPTPDAVFDRLRRHQ 252

Query: 282 VTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG 341
            T     P +  AM    +    D   L         L  +    + ++F  V +V   G
Sbjct: 253 PTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIG 311

Query: 342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398
            TE    +F +  P +  R+G++G+   G   ++V  + G  +  G+ GEL I GP+
Sbjct: 312 STE-MLHIFLSNLPGDV-RYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPS 365

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 79/357 (22%), Positives = 144/357 (40%), Gaps = 47/357 (13%)

Query: 69   RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTN-SIEIPILYFSLLSLGVIISPANP 127
             +++ E  RR N LA  L  +      +    ++   S+E+ +   ++L  G    P +P
Sbjct: 1599 ELTYGELNRRANRLAHRL--IALGVGPEVLVGIAVERSLEMVVGLLAILKAGGAYVPLDP 1656

Query: 128  VNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDR 186
                  ++  I+ S   +    S +  +L      R++++D  +       W   +    
Sbjct: 1657 EYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQED------DWLEGYSDSN 1710

Query: 187  AKVCQSD--VAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTM 241
              V  +   +A ++Y+SG+TGR KG    H  L     A   ++  S    +  V+ FT 
Sbjct: 1711 PAVNLAPQNLAYVIYTSGSTGRPKGAGNRHGALVNRLCATQEAYQLSA---ADVVLQFT- 1766

Query: 242  PY---FHIYGLFFCFRAAALMETA-VVMQRF----DLKMMLKAVEEFRVTHAAVTPPIVV 293
             +     ++ LF+      L+  A +V+       D + +++ +E  +VT     P ++ 
Sbjct: 1767 SFAFDVSVWELFW-----PLINGARLVIAPPGAHRDPEQLIQLIERQQVTTLHFVPSMLQ 1821

Query: 294  AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRT 352
             + +      + L SL  V CG   L  + +  +  + P   L   YG TE+   V   T
Sbjct: 1822 QLLQMDEQVEHPL-SLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWT 1880

Query: 353  VGPDECRRWGSTGRLS-------AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
                 CRR    GR S       A L   I+D  + + +P G  GEL + G  + +G
Sbjct: 1881 -----CRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARG 1931

Length = 3956

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 81/356 (22%), Positives = 135/356 (37%), Gaps = 74/356 (20%)

Query: 71  SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
           S+ E    +   A+ L ++  + K +  F L   S E+ +     L LG +  P      
Sbjct: 2   SYQELKELSARFANVLASLG-VGKGERVFTLLPRSPELYVAALGTLKLGAVYGPLFSAFG 60

Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC 190
              I  +++L    +   T         L  RT     PE                    
Sbjct: 61  PEPIRDRLELGEAKVLITTPE-------LYERT----DPE-------------------- 89

Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF-------------ASSPKRVSPAVM 237
             D A + ++SGTTG+ KGV+  HR + A  A++               + P  V+    
Sbjct: 90  --DPALLHFTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDVYWCTADPGWVTGTS- 146

Query: 238 LFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAM 295
                    YG+     A  L    +V+    FD +     +EE +VT     P  +  +
Sbjct: 147 ---------YGII----APLLNGVTLVVDEGEFDAERWYGILEEEKVTVWYTAPTALRML 193

Query: 296 SKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353
            + G      YDLSSL  +A    PL  + +  +  K   + +   +  TE T  +    
Sbjct: 194 MRAGPELAARYDLSSLRHIASVGEPLNPEVV-VWGEKVLGMPIHDTWWQTE-TGAIMIAN 251

Query: 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSL----PPGKEGELSIRG--PTIMKGI 403
            P    + GS GR   G+EA +++ + GD L     PG+ GEL+++   P++ +G 
Sbjct: 252 YPGIPVKPGSMGRPLPGIEAAVIERD-GDGLTPVTGPGQVGELALKPGWPSMFRGY 306

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 58.0 bits (140), Expect = 7e-09
 Identities = 79/352 (22%), Positives = 131/352 (37%), Gaps = 17/352 (4%)

Query: 54   RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
            R  D VAL       R+S++E  RR N LA  L     +  +    V    S+E+ +   
Sbjct: 3069 RTPDAVALA--FGEQRLSYAELNRRANRLAHRLIERG-VGPDVLVGVAVERSLEMVVGLL 3125

Query: 114  SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDS 173
            ++L  G    P +P   E  ++  ++ S   +  + S +   LA+      L    E   
Sbjct: 3126 AILKAGGAYVPLDPEYPEERLAYMLEDSGAQLLLSQSHLRLPLAQGVQVLDLDRGDE--- 3182

Query: 174  MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS 233
                 N        +    ++A ++Y+SG+TG+ KGV + H  L+  +     +    V 
Sbjct: 3183 -----NYAEANPAIRTMPENLAYVIYTSGSTGKPKGVGIRHSALSNHLCWMQQAYGLGVG 3237

Query: 234  PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVV 293
              V+ FT   F ++     F         V+    D +     VE        V      
Sbjct: 3238 DRVLQFTTFSFDVFVEEL-FWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPS 3296

Query: 294  AMSKG-GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT 352
             +       D +  +SL+ + CG   L  D      +  P   L   YG TE+T  V   
Sbjct: 3297 MLQAFLEEEDAHRCTSLKRIVCGGEALPADLQQQVFAGLP---LYNLYGPTEATITVTHW 3353

Query: 353  VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
               +E +     GR  A     I+D  + + +P G  GEL + G  + +G  
Sbjct: 3354 QCVEEGKDAVPIGRPIANRACYILD-GSLEPVPVGALGELYLGGEGLARGYH 3404

Length = 5163

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 54/235 (22%), Positives = 89/235 (37%), Gaps = 56/235 (23%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF-TMPYFHIYGLFF 251
           D+A ++Y+SG+TG+ KGV ++HR L   +  S A  P   +   +L  T   F I     
Sbjct: 94  DLAYVIYTSGSTGKPKGVEVSHRALVNFL-LSMARRPGLGASDRLLAVTTISFDI----- 147

Query: 252 CFRAAALME---------TAVVMQRFDLK---MMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
                +++E         T V+     ++    + + + + R+T    TP    A  +  
Sbjct: 148 -----SVLELLLPLLSGATVVIASAETVRDPERLARLIADERITIMQATP----ATWRML 198

Query: 300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR 359
              G+      T  CG   L +D      S      L   YG TE+T             
Sbjct: 199 LAAGWRGRESLTALCGGEALPRDLAERLLST--GAELWNMYGPTETTI------------ 244

Query: 360 RWGSTGRLSAGLEAK------------IVDPETGDSLPPGKEGELSIRGPTIMKG 402
            W +  R++A                 ++D +    +PPG  GEL I G  + +G
Sbjct: 245 -WSTCARVTAADGPVTIGRPIANTQVYVLDED-LQPVPPGVPGELYIGGDGVARG 297

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 82/362 (22%), Positives = 150/362 (41%), Gaps = 41/362 (11%)

Query: 68  LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
           ++ SF E    +   A+ L     L + D   V+     E  ++  + +  G++  P   
Sbjct: 40  VKWSFRELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTI 99

Query: 128 VNTESEISRQIQLS-------NPVIAFATSSVVHKLAKLKHRTILIDSPE-------FDS 173
             T  +I  ++Q S       +  +A A  S+  +   LK  T L+ S         F  
Sbjct: 100 QLTAKDILYRLQASKAKCIVTSDELAPAVDSIASECPSLK--TKLLVSEHSRDGWLNFKE 157

Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR-V 232
           +    +++H   + K    +  AI ++SGTTG  K  M  H + +  +           +
Sbjct: 158 LLKEASTEHTCVKTK--SQEPMAIYFTSGTTGFPK--MAEHSHSSLGLGLKVNGRYWLDL 213

Query: 233 SPAVMLFTMP-----YFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV 287
           +P+ +++ M         I+ LF  +   A +     + RFD K++L+ + ++ +T    
Sbjct: 214 TPSDIMWNMSDTGWIKAAIWSLFSPWIQGACVFVHH-LPRFDPKVILQTLSKYPITTF-C 271

Query: 288 TPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES-- 345
           + P V  M        Y   SL     G  PL  + +  + ++   + L + YG TE+  
Sbjct: 272 SAPTVYRMLVQQDLTSYKFKSLRHCVTGGEPLNPEVLEQWKAQ-TGLDLYEGYGQTETGL 330

Query: 346 TAGVFRT--VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-GPTIMKG 402
               F+   + P      GS G+ S   + +I+D + G+ LPPG EG++ IR  PT    
Sbjct: 331 ICANFKGMKIKP------GSMGKASPPYDVQIID-DNGNVLPPGTEGDIGIRVKPTRPFC 383

Query: 403 IF 404
           +F
Sbjct: 384 LF 385

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 1/56 (1%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247
            DVA I Y+SGTTG  KGV+LTH NL A VA S  S+    S  V +  +P  HIY
Sbjct: 221 EDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSD-VHISYLPLAHIY 275

Length = 651

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 71/269 (26%), Positives = 102/269 (37%), Gaps = 64/269 (23%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS------SFASSPKRVSPAVMLFTMPYFH 245
            D+  IMY+SGT+G  KGV+LTH  +   V         F    K     V L  +P  H
Sbjct: 220 LDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFED--KMTHDDVYLSFLPLAH 277

Query: 246 IYGLF---FCFRAAA---------------LMET-----AVVMQRFD--LKMMLKAVEEF 280
           I       + FR  A               LME      A V + F+   + + KA++E 
Sbjct: 278 ILDRMIEEYFFRKGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQEL 337

Query: 281 R---------------------VTHAAVTP-PIVVAMSKGGSTDGYDLSSLETVACGAAP 318
                                  +H   +P    +A  K  +  G     L  +  G AP
Sbjct: 338 NPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLG---GRLRLLISGGAP 394

Query: 319 LGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGLEAKIVD 377
           L  + I  F        +VQ YGLTE+      T+G PDE    G+ G  +   E ++ +
Sbjct: 395 LSTE-IEEFLRVTSCAFVVQGYGLTETLGPT--TLGFPDEMCMLGTVGAPAVYNELRLEE 451

Query: 378 -PETG-DSLPPGKEGELSIRGPTIMKGIF 404
            PE G D L     GE+ +RG  +  G +
Sbjct: 452 VPEMGYDPLGEPPRGEICVRGKCLFSGYY 480

Length = 660

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 66/265 (24%), Positives = 104/265 (39%), Gaps = 64/265 (24%)

Query: 176 MSWNSKHELD----RAKVCQSDVAA----------IMYSSGTTGRVKGVMLTHRNLTAAV 221
           M+  +  ++D    RA+   + V            I+Y+SGTTG+ KGV    R+ T   
Sbjct: 203 MARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGV---QRD-TGGY 258

Query: 222 ASSFASSPKRVSPAVMLFTMPYFHIYG-----LFFC-------------FRAAALMETAV 263
           A + A+S                 I+G      FFC               A  L   A 
Sbjct: 259 AVALATSMD--------------TIFGGKAGETFFCASDIGWVVGHSYIVYAPLLAGMAT 304

Query: 264 VMQ-----RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD---GYDLSSLETVACG 315
           +M      R D  +  + VE+++V     + P  + + K         +DLSSL  +   
Sbjct: 305 IMYEGLPTRPDAGIWWRIVEKYKVNRM-FSAPTAIRVLKKQDPALLRKHDLSSLRALFLA 363

Query: 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTES---TAGVFRTVGPDECRRWGSTGRLSAGLE 372
             PL + T  ++ S+   V ++  Y  TE+      + R V  D   R GS G    G  
Sbjct: 364 GEPLDEPT-ASWISEALGVPVIDNYWQTETGWPILAIARGVE-DRPTRLGSPGVPMYGYN 421

Query: 373 AKIVDPETGDSLPPGKEGELSIRGP 397
            K+++  TG+   P ++G L I GP
Sbjct: 422 VKLLNEVTGEPCGPNEKGVLVIEGP 446

Length = 629

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 93/392 (23%), Positives = 151/392 (38%), Gaps = 75/392 (19%)

Query: 70  VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI----ISPA 125
           +++S+F  R  ++ + LQ VT+    D   +L+  +++  I +F  L  G I      PA
Sbjct: 56  LTWSQFGARNRAVGARLQQVTK--PGDRVAILAPQNLDYLIAFFGALYAGRIAVPLFDPA 113

Query: 126 NPVNTESEISRQIQLSNPVIAFATSSV--VHKL-----AKLKHRTILIDS-PEFDSMTMS 177
            P +     +     +   I   T S   V K      AK + R I +D+ P  D +  +
Sbjct: 114 EPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDAVP--DEVGAT 171

Query: 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-----ASSFASSPKRV 232
           W         +  +  +A + Y+SG+T    GV +TH NL   V     A       + V
Sbjct: 172 W------VPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDALEGQEGDRGV 225

Query: 233 SPAVMLFTMPYFHIYGLF------FCFRAAALMETAVVMQ---RFDLKMMLKAVEEFRVT 283
           S       +P+FH  GL               M  A  ++   R+  ++  K        
Sbjct: 226 S------WLPFFHDMGLITVLLPALLGHYITFMSPAAFVRRPGRWIRELARKPGGTGGTF 279

Query: 284 HAAVTPPIVVAMSKGGSTDG---YDLSSLETVACGAAPLGKDTIMAFASKF-----PKVV 335
            AA       A ++G   DG    DLS+++ +  G+ P+   ++  F   F     P   
Sbjct: 280 SAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTA 339

Query: 336 LVQAYGLTESTAGVFRTVGPDECR------------RW-------------GSTGRLSAG 370
           +  +YG+ E+T  V  T   +E              R+              S G++   
Sbjct: 340 IKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVS 399

Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             A IVDPET   LP G+ GE+ + G  I  G
Sbjct: 400 EWAVIVDPETASELPDGQIGEIWLHGNNIGTG 431

Length = 631

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 52/222 (23%), Positives = 83/222 (37%), Gaps = 25/222 (11%)

Query: 186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFASSPKRVSPAVMLFTMPYF 244
           R K+   D+ A MY+SGTTG  KGV +    L A  A   +A   +            ++
Sbjct: 83  RGKL-DDDLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRD--------DDVFW 133

Query: 245 HI------YGLFFCFRAAALMETAVVMQR--FDLKMMLKAVEEFRVTHAAVTPPIVVAM- 295
           +I      YGL++       M    V     F  +     +E   VT+ A +P     + 
Sbjct: 134 NIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLM 193

Query: 296 SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES--TAGVFRTV 353
           + G          L   +    PL  + +  +      V +   YG TE+    G    +
Sbjct: 194 AAGADAAARIKLKLRVASSAGEPLNPEVV-RWFQANLGVTIHDHYGQTETGMPVGNHHAL 252

Query: 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR 395
             +   R GS G    G    ++D + G  L  G+ G+L+I 
Sbjct: 253 AHEV--RAGSMGLPLPGYRIAVLD-DDGQPLADGEPGQLAID 291

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 23/200 (11%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI---ISPA 125
           RV+++E  R+  ++A  L ++  LS      +LS NSIE  +L  + +  GV    +SPA
Sbjct: 25  RVTYAEALRQVRAIAQALLDL-GLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPA 83

Query: 126 NPVNTE--SEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSPEFDSMTMSWN 179
             + ++  +++     L  P   FA        A     L    ++          +++ 
Sbjct: 84  YSLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVVAVRGAPGGPAIAFA 143

Query: 180 S------KHELDRA--KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASS 228
           +         +D A   V    VA  +++SG+TG  K V+ THR L A    +A  +   
Sbjct: 144 ALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTHRMLCANQAMIAQCWPFL 203

Query: 229 PKRVSPAVMLFTMPYFHIYG 248
            +   P V++  +P+ H +G
Sbjct: 204 TEE--PPVLVDWLPWNHTFG 221

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 18/215 (8%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVM-----LFTMPYFHIY 247
           D+A ++Y+SG+TGR KGV + HRN  A +  + A         V+      F +  F I+
Sbjct: 106 DLAYVIYTSGSTGRPKGVAIEHRNAAALLQWAAAVFSAEELAGVLAATSICFDLSVFEIF 165

Query: 248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS 307
                     L +    +   D    L A  E  VT     P     + +  +      S
Sbjct: 166 VPLSTGGRVVLADN--ALALPD----LPAKAE--VTLINTVPSAARELLRHDALP----S 213

Query: 308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRL 367
           S+ TV     PL ++ +    +      +   YG +E T             R  S GR 
Sbjct: 214 SVRTVNLAGEPLPQELVQRLYALPQVERVYNLYGPSEDTTYSTYAEVEPGASRTPSIGRP 273

Query: 368 SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            AG +A ++D      +P G  GEL I G  + +G
Sbjct: 274 LAGTQAYVLD-AHLQPVPVGVPGELYIGGAGVARG 307

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 53/225 (23%), Positives = 90/225 (40%), Gaps = 31/225 (13%)

Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHR----NLTAAVASSFASSPKRVS--PAVMLFTMPYF 244
           + D A I+Y+SGTTG+ KG + TH          +   F   P         M + M  +
Sbjct: 99  KDDPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDMGWMMGPW 158

Query: 245 HIYG--LF----FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV-VAMSK 297
            + G  L       +  A        + R         VE  +VTH  ++P ++    + 
Sbjct: 159 LVLGGLLLGATIVLYEGAPDYPDPDRLWRI--------VERHKVTHLGLSPTLIRALRAH 210

Query: 298 GGST-DGYDLSSLETVACGAAPLGKDTIMAFASKFPK--VVLVQAYGLTESTAGVFRTVG 354
           G +  +G+DLSSL  +     P   ++ +    +       ++   G TE + G+   +G
Sbjct: 211 GDAPVEGHDLSSLRVLGSTGEPWDPESWLWLFERVGGGRAPIINYSGGTEISGGI---LG 267

Query: 355 PDECR--RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
               R  +  S    S G++A +VD + G  +     GEL +R P
Sbjct: 268 NVPIRPIKPCSFNGPSPGMDADVVDED-GRPVRGE-VGELVVRAP 310

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 83/372 (22%), Positives = 137/372 (36%), Gaps = 55/372 (14%)

Query: 70  VSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN 129
           V++ E  R  ++LA  L ++  L       +LS NSIE  ++  + +  GV  +P +P  
Sbjct: 81  VTYGEAKRAVDALAQALLDL-GLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSP-- 137

Query: 130 TESEIS------RQI-QLSNPVIAFATSSV-----VHKLAKLKHRTILIDSPEFDSMTMS 177
             S +S      + +  L  P + FA S       +  L  L    + +  P     +++
Sbjct: 138 AYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGIASIA 197

Query: 178 W--------NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA--S 227
           +         +      A +    VA  +++SG+TG  K V+ T R + A +A       
Sbjct: 198 FADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRP 257

Query: 228 SPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV--------VMQRFDLKMMLKAVEE 279
                 P V L  MP+ H  G    F    L             +   F+    ++ + E
Sbjct: 258 REPDPPPPVSLDWMPWNHTMGGNANFN-GLLWGGGTLYIDDGKPLPGMFE--ETIRNLRE 314

Query: 280 FRVTHAAVTPP----IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDT---IMAFASKFP 332
              T     P     +  AM K  +       +L  +A G A L  D    + A A +  
Sbjct: 315 ISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTT 374

Query: 333 --KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEG 390
             ++     YG TE TA        D   R G  G    G+E K+         P G + 
Sbjct: 375 GHRIPFYTGYGATE-TAPTTTGTHWDT-ERVGLIGLPLPGVELKLA--------PVGDKY 424

Query: 391 ELSIRGPTIMKG 402
           E+ ++GP +  G
Sbjct: 425 EVRVKGPNVTPG 436

Length = 624

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%)

Query: 155 KLAKLKHR--TILIDSPEFDSMTMSWNSKHELDRAKVCQSD---VAAIMYSSGTTGRVKG 209
           K+  LK +   + I    FD MT     K++    K+   D   + +I+Y+SGT+G+ KG
Sbjct: 267 KIKDLKEKAKKLGISIILFDDMT-----KNKTTNYKIQNEDPDFITSIVYTSGTSGKPKG 321

Query: 210 VMLTHRNLTAAVAS-SFASSPKRVSPAVMLFTMPYFHIY 247
           VML+++NL   V      S  K+ +P   L  +P  HIY
Sbjct: 322 VMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIY 360

Length = 746

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 97/398 (24%), Positives = 159/398 (39%), Gaps = 81/398 (20%)

Query: 68  LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI----IS 123
           + +++++   R  ++ + LQ V      D   +L+   I+    +F+ +  G I     +
Sbjct: 67  VELTWTQLGVRLRAVGARLQQVAG--PGDRVAILAPQGIDYVAGFFAAIKAGTIAVPLFA 124

Query: 124 PANPVNTESEISRQIQLSNPVIAFATS----SVVHKLAKLKH----RTILIDS-PEFDSM 174
           P  P + E  +   ++ + P +   T+    +V   L  L      R I ID+ P  DS 
Sbjct: 125 PELPGHAE-RLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIP--DSA 181

Query: 175 TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR----NLTAAVAS--SFASS 228
                        ++   DV+ + Y+SG+T    GV +THR    NL   + S      +
Sbjct: 182 G------ESFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSIDLLDRN 235

Query: 229 PKRVSPAVMLFTMPYFHIYGL-FFCFRAAA-----LME-TAVVM--QRFDLKMMLKAVEE 279
              VS       +P +H  GL    F A       LM  TA V   QR+ +K + +    
Sbjct: 236 THGVS------WLPLYHDMGLSMIGFPAVYGGHSTLMSPTAFVRRPQRW-IKALSEGSRT 288

Query: 280 FRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVAC--GAAPLGKDTIMAFASKF-----P 332
            RV  AA       A  +G   +G D+  L  V    G+ P+  D +  F   F     P
Sbjct: 289 GRVVTAAPNFAYEWAAQRGLPAEGDDI-DLSNVVLIIGSEPVSIDAVTTFNKAFAPYGLP 347

Query: 333 KVVLVQAYGLTESTAGVFRTVGPD--------ECRRWG------------------STGR 366
           +     +YG+ E+T  V  T+ PD        +  + G                  S G+
Sbjct: 348 RTAFKPSYGIAEATLFV-ATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQ 406

Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
           ++    A IVDP+TG  LP G+ GE+ + G  I +G +
Sbjct: 407 VARSQWAVIVDPDTGAELPDGEVGEIWLHGDNIGRGYW 444

Length = 612

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 80/373 (21%), Positives = 145/373 (38%), Gaps = 41/373 (10%)

Query: 71  SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
           +F+    R  +LA  L +   ++ +     +  N  E   + F++  +G + +P N    
Sbjct: 40  TFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLM 99

Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFDSMTMSWNSKH--- 182
             +I   I  +   +  A   +  +L ++       R ++   P       +   +    
Sbjct: 100 NDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKV 159

Query: 183 ------------ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230
                         D  ++ ++  AAI YS+GTTG  KGV+ +HR+L     S   +   
Sbjct: 160 YSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL 219

Query: 231 RVSPAV-MLFTMPYFHIYGLFFCFRAAALME-TAVVMQRFDL--KMMLKAVEEF--RVTH 284
            V+     L  +P +H+  L +    AA M  T +V    DL    + K +     RV H
Sbjct: 220 AVTHGESFLCCVPIYHV--LSWGVPLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAH 277

Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
               P + + +      +  +  SL+ +  G + +    I A+  ++  V +V  +G+TE
Sbjct: 278 GV--PTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERY-GVDVVHVWGMTE 334

Query: 345 STAGVFRTV-----GPDECRRWG---STGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396
           ++     TV     G     RW    S GR  A LE +IV+           EGE+ +RG
Sbjct: 335 TSP--VGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRG 392

Query: 397 PTIMKGIFLPHFE 409
             +    +    E
Sbjct: 393 NWVTASYYHSPTE 405

Length = 576

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 62/241 (25%), Positives = 91/241 (37%), Gaps = 33/241 (13%)

Query: 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASS--PKRVSPAV 236
              D A V   D   I+Y+SG+TG  KGV ++H NL   T  + + F  S   + ++ A 
Sbjct: 132 VSFDHA-VKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADFPLSEGKQFLNQAP 190

Query: 237 MLFTMPYFHIY------GLFFCFRAAALMETAVVMQRF-DLKMMLKAVEEFRVTHAAVTP 289
             F +    +Y      G   C           +   F  L   L         +  V+ 
Sbjct: 191 FSFDLSVMDLYPCLASGGTLHCL-------DKDITNNFKLLFEELPKT----GLNVWVST 239

Query: 290 PIVVAM---SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
           P  V M       + + Y       + CG   L   T  A   +FPK  +   YG TE+T
Sbjct: 240 PSFVDMCLLDPNFNQENYP-HLTHFLFCGEE-LPVKTAKALLERFPKATIYNTYGPTEAT 297

Query: 347 AGVFRTVGPDECRRWGST---GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGI 403
             V       E          G     +   I+D E G+ LP G++GE+ I GP++ KG 
Sbjct: 298 VAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGY 356

Query: 404 F 404
            
Sbjct: 357 L 357

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 65/239 (27%), Positives = 101/239 (42%), Gaps = 51/239 (21%)

Query: 186 RAKVCQ--SDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-----ASSFASSPKRVSPAVML 238
            A+V Q   D A I+++SG+ G  KGV+ +H++L A V      + F  + + +S     
Sbjct: 357 LAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMS----- 411

Query: 239 FTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV----VA 294
             +P FH +GL        L    V +    L             H  + P +V      
Sbjct: 412 -ALPLFHSFGLTVGLFTPLLTGAEVFLYPSPL-------------HYRIVPELVYDRNCT 457

Query: 295 MSKGGST---------DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
           +  G ST         + YD + L  V  GA  L + T   +  KF   +L + YG+TE 
Sbjct: 458 VLFGTSTFLGNYARFANPYDFARLRYVVAGAEKLQESTKQLWQDKFGLRIL-EGYGVTEC 516

Query: 346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE--GELSIRGPTIMKG 402
              V   V P   +  G+ GR+  G++A+++         PG E  G L ++GP IM G
Sbjct: 517 APVVSINV-PMAAKP-GTVGRILPGMDARLLSV-------PGIEQGGRLQLKGPNIMNG 566

Length = 718

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 63/350 (18%), Positives = 117/350 (33%), Gaps = 30/350 (8%)

Query: 78  RTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQ 137
           R   L   L+ +  +   D    L  N       YF++  +G ++  ANP  +  EI+  
Sbjct: 33  RARRLMGGLRALG-VGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYI 91

Query: 138 IQLSNPVIAFATSSVVHKLAK-LKHRTILIDSP-------EFDSMTMSWNSKHELDRAKV 189
           +  +   +     +++  +         +           E          +       V
Sbjct: 92  LNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVR-V 150

Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRN--LTAAVASSFASSPKRVSPAVMLFTMPYFHIY 247
            +     + Y++GTTG  KGV+ +HR   L +  AS    +       V+L  +P FH+ 
Sbjct: 151 PERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKD-VVLPVVPMFHVN 209

Query: 248 GLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIV--VAMSKGGSTDGY 304
                + A  +    V+     D   +++  +   VT  A  P +   +A     +    
Sbjct: 210 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRL 269

Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE----STAGV----FRTVGPD 356
                  V  G+A       +    +   V + Q YGLTE               ++  +
Sbjct: 270 KT-LRRLVVGGSAA---PRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 325

Query: 357 ECRRWGSTGRLSAGLEA-KIVDPETGDSLPPGKEGE-LSIRGPTIMKGIF 404
           E     +   L   L   ++ D E       GK    + ++GP I  G +
Sbjct: 326 EKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYY 375

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 19/29 (65%), Positives = 23/29 (79%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAV 221
           D+A IMY+SGTTG  KGVM TH +LTA +
Sbjct: 265 DLALIMYTSGTTGDPKGVMHTHGSLTAGI 293

Length = 700

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 55/218 (25%), Positives = 91/218 (41%), Gaps = 39/218 (17%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF 251
            DVA ++ +SGTTG  KG MLT   L    AS+ A+  +   P   L  +P  HI GL  
Sbjct: 35  DDVALVVATSGTTGTPKGAMLTAAAL---TASADATHDRLGGPGQWLLALPAHHIAGLQV 91

Query: 252 CFRAAALMETAVVMQ---RFDLKMMLKAVEEFRV--THAAVTP-PIVVAMSKGGSTDGYD 305
             R+       V +     FD   + +AV E      + ++ P  +  A+    +T    
Sbjct: 92  LVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAATAA-- 149

Query: 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG-VFRTVGPDECRRWGST 364
           L+ L+ V  G  P      +  A+    + +V+ YG++E++ G V+              
Sbjct: 150 LAELDAVLVGGGPAPAP--VLDAAAAAGINVVRTYGMSETSGGCVY-------------D 194

Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           G    G+  ++ D            G +++ GPT+ KG
Sbjct: 195 GVPLDGVRVRVED------------GRIALGGPTLAKG 220

Length = 358

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 51/222 (22%), Positives = 87/222 (39%), Gaps = 18/222 (8%)

Query: 193  DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-----VMLFTMPYFHIY 247
            ++A ++Y+SG+TG  KGV ++H  L A   ++       +SPA      M F+    H  
Sbjct: 2147 NLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY--ELSPADCELQFMSFSFDGAH-E 2203

Query: 248  GLF--FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
              F      A  L+      + +D + +   +E   VT     P  +  +++    DG  
Sbjct: 2204 QWFHPLLNGARVLIRDD---ELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERDGRP 2260

Query: 306  LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES--TAGVFRTVGPDECRRWGS 363
              ++     G   +   ++         V L   YG TE+  T  +++    D C     
Sbjct: 2261 P-AVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKCRPQDPCGAAYV 2319

Query: 364  -TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
              GR      A I+D    + L PG  GEL + G  + +G  
Sbjct: 2320 PIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYL 2360

Length = 5163

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 52/232 (22%)

Query: 197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-----FF 251
           I+Y+SGTTG+ KGV+        AVA  ++                  +IYG+     F+
Sbjct: 225 ILYTSGTTGKPKGVVRD--TGGYAVALKWSMR----------------NIYGIKPGDVFW 266

Query: 252 CFRA------------AALME--TAVVMQ-----RFDLKMMLKAVEEFRVTHAAVTPPIV 292
                             L+   T V+ +       D     + +EE+ V      P  +
Sbjct: 267 AASDVGWVVGHSYIVYGPLLHGATTVLYEGKPVGTPDAGAYWRVIEEYGVNALFTAPTAI 326

Query: 293 VAMSKGGSTDG-----YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
            A+ +    DG     YDLSSL  +      L   T+  +  K   V ++  +  TE+  
Sbjct: 327 RAI-RKQDPDGEYIKKYDLSSLRALFLAGERLDSPTL-EWIEKTLGVPVIDHWWQTETGW 384

Query: 348 GVFRTVGPDECR--RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
            +       E    + GS G+   G + +++D ETG+ L PG+ G + I+ P
Sbjct: 385 PITANCVGLELLPIKPGSPGKPVPGYDVQVLD-ETGEELGPGELGNIVIKLP 435

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 58/259 (22%), Positives = 96/259 (37%), Gaps = 21/259 (8%)

Query: 152 VVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC---QSDVAAIMYSSGTTGRVK 208
           V   LA ++        P  D    +  ++HE  +  V     ++ + I+Y+SGTTG+ K
Sbjct: 195 VDRGLAPMRLI------PGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPK 248

Query: 209 GVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM--- 265
           GV         A+A S  +     +  VM        + G  +   A  L   A V+   
Sbjct: 249 GVQRDVGGYAVALALSMWAIFGIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEG 308

Query: 266 --QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGK 321
                D  +    VE + V      P  +  + K  +     +DLSSL  +     PL +
Sbjct: 309 LPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDE 368

Query: 322 DTIMAFASKFPKVVLVQAYGLTES---TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP 378
            T         K V +  Y  TE+      +   +      + GS G    G   +++D 
Sbjct: 369 PTAHWITDGLGKPV-IDNYWQTETGWPVLAIMPGLDLKPV-KLGSPGLPMYGYHLRVLDE 426

Query: 379 ETGDSLPPGKEGELSIRGP 397
            TG    P ++G L++  P
Sbjct: 427 ATGRPCGPNEKGVLTVVPP 445

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213281 cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK)

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 59/228 (25%), Positives = 84/228 (36%), Gaps = 47/228 (20%)

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHR------NLTAAVASSFASSPK---RVSPAVMLF 239
           V +  V  I  SSGTTG+   V  T        NL A    +    P      S    LF
Sbjct: 75  VPKEQVVRIHASSGTTGKPTVVGYTQHDIDTWANLVARSLRAAGGRPGDKFHNSYGYGLF 134

Query: 240 TMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
           T       GL   + A  L  T V M     +  ++ + +F+     VTP   + +++  
Sbjct: 135 TG------GLGAHYGAERLGCTVVPMSGGQTEKQVQLIRDFKPDIIHVTPSYALNLAEEF 188

Query: 300 STDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357
              G D   SSL+    GA P  +        +   +  +  YGL+E        +GP  
Sbjct: 189 ERQGIDPAESSLKIGVFGAEPWTQAQRREIERRL-GIDALDIYGLSE-------VMGP-- 238

Query: 358 CRRWGSTGRLSAGLEAK-------------IVDPETGDSLPPGKEGEL 392
                  G     +E K             I+DPETG+ LP G+ GEL
Sbjct: 239 -------GVAFECVETKDGPTIWEDHFYPEIIDPETGEPLPDGEIGEL 279

PaaK catalyzes the first step in the aromatic degradation pathway, by converting phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has been found in proteobacteria as well as gram positive prokaryotes. The enzyme is specifically induced after aerobic growth in a chemically defined medium containing PA or phenylalanine (Phe) as the sole carbon source. PaaKs are members of the adenylate-forming enzyme (AFE) family. However, sequence comparison reveals divergent features of PaaK with respect to the superfamily, including a novel N-terminal sequence. Length = 424

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 15/100 (15%)

Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVL---VQAYGLTEST--AGVFRTVGPDECRRWGS 363
           +  +  G  PL   T      +F  VV    +Q +GLTE+    G+ RT G  E     +
Sbjct: 430 VRAMLSGGGPLSAAT-----QEFVNVVFGMVIQGWGLTETVCCGGIQRT-GDLEP---NA 480

Query: 364 TGRLSAGLEAKIVD-PETGDSLPPGKEGELSIRGPTIMKG 402
            G+L  G+E K++D  E   +  P   GE+ +RGP + KG
Sbjct: 481 VGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKG 520

Length = 700

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 54/222 (24%), Positives = 87/222 (39%), Gaps = 37/222 (16%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYF----HIYG 248
             A I Y+SG+TG+ KGV L+   L   VA S A +   + P   L  +P      +I G
Sbjct: 113 GTAKITYTSGSTGQPKGVCLSAAAL-ETVAQSLAEAIAILEPERHLCLLPLATLLENIAG 171

Query: 249 LFFCFRAAALMETAVVM-----------QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
           ++    A  LM   V++              D    + A+  ++     + P +++A+  
Sbjct: 172 VY----APLLMGATVILVPLAELGLSGSSGLDPAQFVAALSRWQPHSLILVPQLLMALVA 227

Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIM-AFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
                     SL  VA G A +    +  A A   P   + + YGL+E  A V     P 
Sbjct: 228 AVEQGPLPPESLRFVAVGGARVSPSLLQRARALGLP---VYEGYGLSEC-ASVVSLNTPG 283

Query: 357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398
              R GS G+    ++  I +           +GE+ +RG  
Sbjct: 284 A-DRPGSVGKPLPHVQVSIAN-----------DGEILVRGSL 313

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 12/89 (13%)

Query: 315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK 374
           GAAP+ ++T+  F S    + +++ YG++E++     TV   +  R  S G+   G E K
Sbjct: 326 GAAPISRETLEFFLSL--NIPIMELYGMSETSGP--HTVSNPQNYRLLSCGKALPGCETK 381

Query: 375 IVDPET-GDSLPPGKEGELSIRGPTIMKG 402
           I +P+  G        GE+ I G  +  G
Sbjct: 382 IHNPDADGI-------GEICIWGRHVFMG 403

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 78/364 (21%), Positives = 118/364 (32%), Gaps = 86/364 (23%)

Query: 71  SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
           ++SE        A +L     +   D   + +TNS E   L+ +L S+G + +  N  N 
Sbjct: 7   TYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFIN-YNL 65

Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVC 190
             +                  ++H L K+     +I  P+                    
Sbjct: 66  SGD-----------------PLIHCL-KISGAKFVIVDPD-------------------- 87

Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT-MPYFHIYGL 249
             D AA++Y+SGTTG  KG  ++ R     V S+  S    +      +T MP +H    
Sbjct: 88  --DPAALIYTSGTTGLPKGCAISWRRTL--VTSNPLSHDLNLQFPDRTYTCMPLYHGTAA 143

Query: 250 FFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAV----------TPPIVVAMSK 297
           F       L    T  + ++F      K V +   T              TPP     S 
Sbjct: 144 FLGL-CYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELCRYLLATPP-----SP 197

Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF-RTVGP- 355
                 YD      VA G   L  D    F  +F    + + Y  TE         VGP 
Sbjct: 198 ------YDRDHKVRVAYGNG-LRPDIWERFRERFNVPEIGEFYAATEGVFAFTNHNVGPF 250

Query: 356 --DECRRWGSTGRLSAGLEAKIV--DPETGDSL-----------PPGKEGELSIRGPTIM 400
                   G   R     +  +V  DPET   +           P G+ GE+  R     
Sbjct: 251 TAGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVRFKN 310

Query: 401 KGIF 404
           + +F
Sbjct: 311 RELF 314

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 62/254 (24%), Positives = 94/254 (37%), Gaps = 46/254 (18%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT-MPYFHIYGLFF 251
           D+A + YSSG+T   +GV++THR L A    + +    +V P     + +P++H  GL  
Sbjct: 177 DIAYLQYSSGSTRFPRGVIITHRALMAN-LRAISHDGLKVRPGDRCVSWLPFYHDMGLVG 235

Query: 252 CFRA--AALMETAVVMQRFDLKMM----LKAVEEFRVTHAAVTPP----IVVAMSKGGST 301
                 A  +    +  R D        L  +   R T  + +PP    +          
Sbjct: 236 FLLTPVATQLSVDYLPTR-DFARRPLQWLDLISRNRGT-ISYSPPFGYELCARRVNSKDL 293

Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKV-----VLVQAYGLTESTAGVF------ 350
              DLS       GA  +  D +  FA  F          + +YGL E+T  V       
Sbjct: 294 AELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGS 353

Query: 351 ----------------RTVGPDECRRWGST----GRLSAGLEAKIVDPETGDSLPPGKEG 390
                           + V P    R   T    G+   G E +I + E G  LP    G
Sbjct: 354 GIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPERVVG 412

Query: 391 ELSIRGPTIMKGIF 404
            + +RGP++M G F
Sbjct: 413 HICVRGPSLMSGYF 426

Length = 579

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT---VGPDECRRWGS--TGRLS 368
           CG   L   T      +FP   +   YG TE+T  V  T   +  +   ++     G   
Sbjct: 268 CGEE-LPHKTAKKLLERFPSATIYNTYGPTEATVAV--TSIEITDEMLDQYKRLPIGYAK 324

Query: 369 AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
                 I+D E G  LP G++GE+ I GP++ KG
Sbjct: 325 PDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKG 357

Length = 503

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 170 EFDSMTMSWNSKHELDRAKVCQ-SDVAAIMYSSGTTGRVKGVMLTHRNLT---AAVASSF 225
           EF  +  S   +      +  + +    ++Y+SGTTG  KGVML+H N+T    A     
Sbjct: 127 EFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGTTGMPKGVMLSHDNITWTAKAAVKHM 186

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 41.4 bits (98), Expect = 8e-04
 Identities = 43/245 (17%), Positives = 83/245 (33%), Gaps = 22/245 (8%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D  AL+       +S++E   R N  A +      + K D   +L  N  E    +  L 
Sbjct: 52  DRPALLFE--DQSISYAELNARANRYAHWAAARG-VGKGDVVALLMENRPEYLAAWLGLA 108

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----HRTILIDSPEF 171
            LG +++  N     + ++  + L +         +V    + +        + +   + 
Sbjct: 109 KLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDT 168

Query: 172 DSMTMSWNSKHEL----------DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV 221
                 +                 R+ V   D A  +Y+SGTTG  K  +++H     A 
Sbjct: 169 LDDPEGYEDLAAAAAGAPTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKA- 227

Query: 222 ASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAVEE 279
              F    +     V+   +P +H  G    + ++ L    T  + ++F        V  
Sbjct: 228 MGGFGGLLRLTPDDVLYCCLPLYHNTGGTVAW-SSVLAAGATLALRRKFSASRFWDDVRR 286

Query: 280 FRVTH 284
           +R T 
Sbjct: 287 YRATA 291

Length = 600

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 7/58 (12%)

Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
           A I+Y+SGTTG  KGV+L+ R + A   A+A ++  +       V++  +P FH++GL
Sbjct: 131 ALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAWQWTADD----VLVHGLPLFHVHGL 184

Length = 471

>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase, AACS)

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 42/184 (22%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP- 127
            +S++E   +   LA+ L+++  +   D       N  E  I   +  S+G I S  +P 
Sbjct: 86  EISWAELRSQVARLAAALRDLG-VKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSPD 144

Query: 128 VNTESEISR--QIQLSNPVIAFATSSVV------HKLAKLKH---------RTILIDS-- 168
              E+ + R  QI+   P + FA    V       +  K+             +++    
Sbjct: 145 FGVEAVLDRFGQIE---PKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYLS 201

Query: 169 -------PEFDSMTMSW----NSKHELDRAKVCQSDVAAIMYSSGTTGRVK-------GV 210
                   +F ++T+ W    +    L+  ++       I+YSSGTTG  K       G 
Sbjct: 202 SDAQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIVHGAGGT 261

Query: 211 MLTH 214
           +L H
Sbjct: 262 LLQH 265

AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. AACS is widely distributed in bacteria, archaea and eukaryotes. In bacteria, AACS is known to exhibit an important role in the metabolism of poly-b-hydroxybutyrate, an intracellular reserve of organic carbon and chemical energy by some microorganisms. In mammals, AACS influences the rate of ketone body utilization for the formation of physiologically important fatty acids and cholesterol. Length = 616

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 33/217 (15%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASSPKRVSPAVMLFTMPYFHIYG 248
            ++  I  SSGTTG+      T +++      +A S  S+  R    V        + YG
Sbjct: 90  EEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQN-----AYGYG 144

Query: 249 LF---FCFRAAA--LMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG 303
           LF         A  +  T + +   + +  L+ +++F+ T  A TP  ++ +++    +G
Sbjct: 145 LFTGGLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEG 204

Query: 304 YDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQA---YGLTESTAGVFRTVGPDEC 358
            D    SL+    GA P  ++               +A   YGLTE         G  EC
Sbjct: 205 IDPDKLSLKKGIFGAEPWSEEM----RKVIENRFGCKAFDIYGLTEGFG-----PGAGEC 255

Query: 359 RRWGSTGRLSAGLEA---KIVDPETGDSLPPGKEGEL 392
                   L    +    +IVDPETG+ LP G+ GEL
Sbjct: 256 ---TERNGLHIWEDHFIFEIVDPETGEQLPDGERGEL 289

Length = 438

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 63/338 (18%), Positives = 131/338 (38%), Gaps = 21/338 (6%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
            +++ ++      +A++L    + SKN T  +L  N IE   L+      G    P +  
Sbjct: 26  VLTYKDWFESVCKVANWLN--EKESKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIK 83

Query: 129 NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAK 188
             + E+  ++ +SN  +       ++ L   + R I ID    +   M           +
Sbjct: 84  WKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEID----EWKRMIEKYLPTYAPIE 139

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHR----NLTAAVASSFASSPKRVSPAVMLFTMPYF 244
             Q+    + ++SG+TG+ K  +   +    +    V          V  A  L      
Sbjct: 140 NVQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTL-----V 194

Query: 245 HIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
           H   L+       + +T  +M++F    +L  +E   ++     P ++ ++ K    +  
Sbjct: 195 HSLFLYGAISTLYVGQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYK---ENRV 251

Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST 364
             + ++ ++ GA     +      + FP   L + YG +E  + V   V  +  RR  S 
Sbjct: 252 IENKMKIISSGAK-WEAEAKEKIKNIFPYAKLYEFYGASE-LSFVTALVDEESERRPNSV 309

Query: 365 GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           GR    ++ +I + E G+ +  G+ G + ++ P    G
Sbjct: 310 GRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMG 346

Length = 487

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 12/97 (12%)

Query: 314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEA 373
            G APL  DT   F +      + Q YGLTE+ AG   +   D      S GR+   L  
Sbjct: 427 SGGAPLSGDT-QRFINICLGAPIGQGYGLTETCAGATFSEWDDT-----SVGRVGPPLPC 480

Query: 374 ---KIVDPETGDSL---PPGKEGELSIRGPTIMKGIF 404
              K+V  E G  L    P   GE+ I GP++  G F
Sbjct: 481 CYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYF 517

Length = 696

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 35/176 (19%)

Query: 52  PWRD-----DDTVALINSVTGLRVSFSEFTRRTNSLASYL--QNVTRLSKNDTAFVLSTN 104
           PWR         +AL  +     +++ +   R + LA+    Q V          +   N
Sbjct: 8   PWRHWAQVRPQAIALRLN--DEVLTWQQLCARIDQLAAGFAQQGVVE---GSGVALRGKN 62

Query: 105 SIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA---KLKH 161
           S E  + Y +LL  G  + P NP   +  +                    +L     L  
Sbjct: 63  SPETLLAYLALLQCGARVLPLNPQLPQPLL-------------------EELLPSLTLDF 103

Query: 162 RTILIDSPEFDSMTM-SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
             +L     F ++T                   +A +  +SG+TG  K  + T + 
Sbjct: 104 ALVLEGENTFSALTSLHLQLVEGAHAVAWQPQRLATMTLTSGSTGLPKAAVHTAQA 159

Length = 458

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 9/70 (12%)

Query: 337 VQAYGLTES--TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE--GEL 392
           V+ YG+TE+  T    R  G    RR G  G   AG+E ++VD E G  +P   E  GEL
Sbjct: 270 VERYGMTETLITLST-RADGE---RRPGWVGLPLAGVETRLVD-EDGGPVPHDGETVGEL 324

Query: 393 SIRGPTIMKG 402
            +RGPT+  G
Sbjct: 325 QVRGPTLFDG 334

Length = 471

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 86/389 (22%), Positives = 141/389 (36%), Gaps = 67/389 (17%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYL--QNVTRLSKNDTAFVLSTNSIEIPIL 111
           +  + +AL        + + E       LA+ L  Q+V+R S+     V+S N    P  
Sbjct: 26  QQPEAIALRRCDGTSALRYRELVAEVGGLAADLRAQSVSRGSR---VLVISDNG---PET 79

Query: 112 YFSLLS---LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS 168
           Y S+L+   LG I   A+     + I R  Q+++P  A          + +      I  
Sbjct: 80  YLSVLACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPV 139

Query: 169 PEFDSMTMSWNSKHELDRAKVCQS------DVAAIMYSSGTTGRVKGVMLTHRNLTAA-- 220
              D   ++  S+H LD A +  +      D  A++++SGTTG  K V+L +R   A   
Sbjct: 140 IAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPD 199

Query: 221 ------------VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM--- 265
                       V      SP           +P  HI GL++      LM   + +   
Sbjct: 200 ILQKEGLNWVTWVVGETTYSP-----------LPATHIGGLWWILT--CLMHGGLCVTGG 246

Query: 266 -QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI 324
                L  +L       V    + P ++  +     +    + SL  V  G +       
Sbjct: 247 ENTTSLLEILTTNA---VATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGS-----RA 298

Query: 325 MAFASKFPK---VVLVQAYGLTES--TAGVFRTVGPDECR-RWGSTGRLSAGLEAKIVDP 378
           +A   +F +   V   Q YGL+E+  TA    T      +   G+ GR   G++  +   
Sbjct: 299 IAADVRFIEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAAT 358

Query: 379 ETGDSLPPGKE-----GELSIRGPTIMKG 402
           +      PG       G L I+ P  M G
Sbjct: 359 DGIGPTAPGAGPSASFGTLWIKSPANMLG 387

Length = 540

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 41/203 (20%), Positives = 73/203 (35%), Gaps = 27/203 (13%)

Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
               +F E    +N +A++ Q        D   +   N +E   L+  L  +GV  +  N
Sbjct: 1   DRHWTFRELNEYSNKVANFFQAQG-YRSGDVVALFMENRLEFVALWLGLAKIGVETALIN 59

Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDR 186
             N   E      L + +      +++  L          + P  D +           R
Sbjct: 60  -SNLRLE-----SLLHCITVSKAKALIFNLLDPLLTQSSTEPPSQDDVNF---------R 104

Query: 187 AKVCQSDVAAIMYSSGTTGRVKGVMLTH-RNLTAAVASSFASSPKRVSPA-VMLFTMPYF 244
            K+        +Y+SGTTG  K  ++ H R    A  + +A     + P  V+   +P +
Sbjct: 105 DKLF------YIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAF---GMRPEDVVYDCLPLY 155

Query: 245 HIYGLFFCFRAAALMETAVVMQR 267
           H  G       A L  + VV+++
Sbjct: 156 HSAGGIMGVGQALLHGSTVVIRK 178

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	409
KOG1176	537	consensus Acyl-CoA synthetase [Lipid transport and	100.0
KOG1177	596	consensus Long chain fatty acid acyl-CoA ligase [L	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
KOG1256	691	consensus Long-chain acyl-CoA synthetases (AMP-for	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
KOG1179	649	consensus Very long-chain acyl-CoA synthetase/fatt	100.0
KOG1180	678	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
KOG1175	626	consensus Acyl-CoA synthetase [Lipid transport and	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
PTZ00297	1452	pantothenate kinase; Provisional	100.0
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	100.0
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.95
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.95
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.92
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.91
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.89
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.88
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.81
KOG1178	1032	consensus Non-ribosomal peptide synthetase/alpha-a	99.65
KOG3628	1363	consensus Predicted AMP-binding protein [General f	99.57
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.17
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.89
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	96.24
PLN02247	606	indole-3-acetic acid-amido synthetase	95.44
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	94.92
PLN02620	612	indole-3-acetic acid-amido synthetase	94.39
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	88.71
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	87.78

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=6.1e-56  Score=422.14  Aligned_cols=343  Identities=34%  Similarity=0.524  Sum_probs=294.6

Q ss_pred             cEEEeCCC-CceeeHHHHHHHHHHHHHHhHhccC--CCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHH
Q 015325           59 VALINSVT-GLRVSFSEFTRRTNSLASYLQNVTR--LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS  135 (409)
Q Consensus        59 ~a~~~~~~-~~~~Ty~el~~~~~~la~~L~~~~g--v~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~  135 (409)
                      +.+++... +..+||+|+.+++.++|.+|.+ .|  +++||+|++++||+++++++++||..+|+++.++||.+.+.++.
T Consensus        34 ~~~i~~~~~g~~~T~~e~~~~~~r~A~~L~~-~~~~i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~  112 (537)
T KOG1176|consen   34 TSLVYQDSDGRELTYSELHDRCRRLASALSE-LGLGIKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIA  112 (537)
T ss_pred             ceEEEecCCCcEEcHHHHHHHHHHHHHHHHh-cCCCCCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHH
Confidence            66666532 5899999999999999999997 66  89999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCeEEEEcCchHHHHhhc----CCeEEEeCCC----cchh----------hhcccCCcccccccccCCCCEEEE
Q 015325          136 RQIQLSNPVIAFATSSVVHKLAKL----KHRTILIDSP----EFDS----------MTMSWNSKHELDRAKVCQSDVAAI  197 (409)
Q Consensus       136 ~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~~~----~~~~----------~~~~~~~~~~~~~~~~~~~~~a~i  197 (409)
                      ..++.++++++|++.+....+.+.    ..+++++...    ....          +......  .. .....++|++.+
T Consensus       113 ~~~~~s~~kiif~d~~~~~~i~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~dd~~~i  189 (537)
T KOG1176|consen  113 KQLKDSKPKLIFVDEDFYDKISEATSKLALKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLP--DG-IRPVSEDDTAAI  189 (537)
T ss_pred             HHHHhcCCeEEEEcCchHHHHHHHHhhcCCceEEEecccCccccccccccccchhhccccCCC--cc-cccCCCCCeEEE
Confidence            999999999999999888777533    2445554432    1111          1111110  11 345566999999


Q ss_pred             EcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHH-HHHhCCeEEEecCCCHHHHHHH
Q 015325          198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFR-AAALMETAVVMQRFDLKMMLKA  276 (409)
Q Consensus       198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~-~l~~G~~~v~~~~~~~~~~~~~  276 (409)
                      +|||||||.||||++||++++.......... .....|+.++.+|++|.+|++.++. ++..|+++++.+.++++.+++.
T Consensus       190 l~SSGTTg~PKgV~lsHr~~~~~~~~~~~~~-~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~  268 (537)
T KOG1176|consen  190 LYSSGTTGLPKGVVLSHRNLIANTLSIKIGW-ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDL  268 (537)
T ss_pred             ecCCCCCCCCceEEEecHHHHHHHHHhhhcc-cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHH
Confidence            9999999999999999999998877666655 5777999999999999999966665 5555666666677899999999


Q ss_pred             HHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCC
Q 015325          277 VEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD  356 (409)
Q Consensus       277 i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~  356 (409)
                      |++|++|+++++|+++..|++.+.....+++++|.+.+||+++++++.+++++++|...+.+.||+||+++.++.....+
T Consensus       269 i~kykvt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~  348 (537)
T KOG1176|consen  269 IEKYKVTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGP  348 (537)
T ss_pred             HHHhCEEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCc
Confidence            99999999999999999999998777889999999999999999999999999997799999999999998777755444


Q ss_pred             CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          357 ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       357 ~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      . .+++++|.++++++++|.+ ++|+.+++++.||||++|+++|+|||+||+
T Consensus       349 e-~k~~svG~~~~g~~~~v~~-e~g~~l~~~~~GEI~vrg~~imkGY~~Npe  398 (537)
T KOG1176|consen  349 E-RKPGSVGRLLPGVRVKVLD-ETGVSLGPNQTGEICVRGPQVMKGYLKNPE  398 (537)
T ss_pred             c-CcccccCccccceEEEeeC-CCCCCCCCCCceEEEEECcccchhhcCChH
Confidence            4 6899999999999999888 999999999999999999999999999986

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]

Probab=100.00  E-value=1e-56  Score=400.54  Aligned_cols=364  Identities=25%  Similarity=0.310  Sum_probs=315.0

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      -|+.+.|....++.    ||+.|.+....+.++||+||.+.+..+|++|.+ +|+++||||++..||+.+|+..++||.+
T Consensus        50 ~Tigq~l~~~t~~v----~dkea~Vf~~eg~R~Tf~~~~~ev~slAaGll~-lGL~kGDrVgvwgpN~~~w~l~~lA~A~  124 (596)
T KOG1177|consen   50 ETIGQLLETTTERV----PDKEAAVFDHEGIRLTFSEFVSEVESLAAGLLS-LGLKKGDRVGVWGPNSYEWVLCQLACAR  124 (596)
T ss_pred             ccHHHHHHHHhhcc----CcceEEEEeeccchhhHHHHHHHHHHHHhhHHh-hcCCCCCEEEEecCChHHHHHHHHHHHH
Confidence            89999999999999    999999998778899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH-----HHHhhc------------------CCeEEEeCC------
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLAKL------------------KHRTILIDS------  168 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~------------------~~~~~~~~~------  168 (409)
                      +|.+.+++||++...+++..|++.+++++|+.+.+.     +.+.++                  ..+.+++.+      
T Consensus       125 AG~v~v~~NP~Yq~~elr~~L~k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~G~lkS~~lp~lthvi~~~ed~~~~  204 (596)
T KOG1177|consen  125 AGLVLVNLNPAYQSEELRYVLKKVGCKALFAPPQFKTQNYYETLLEICPEVMRGDPGQLKSELLPELTHVILADEDHPLP  204 (596)
T ss_pred             hceEEeccCcccccHHHHHHHhhcCeEEEEccchhhhchHHHHHHHhhHHhhcCCCccccccccccceEEEecCCCCcCC
Confidence            999999999999999999999999999999876432     111111                  111122211      


Q ss_pred             --CcchhhhcccCCcc----cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCc
Q 015325          169 --PEFDSMTMSWNSKH----ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP  242 (409)
Q Consensus       169 --~~~~~~~~~~~~~~----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p  242 (409)
                        ..+.+++...+...    ........|+|++.|.|||||||.|||+.+||.+++++.......+ ++.+++++++..|
T Consensus       205 Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~vg~r~-g~~e~~~i~~~~P  283 (596)
T KOG1177|consen  205 GAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARAVGARA-GYNEKHRICIPNP  283 (596)
T ss_pred             CceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHHHHHHh-CcCcceEEEecCc
Confidence              11445554443321    1222345679999999999999999999999999999999999988 7888999999999


Q ss_pred             hhhHHhH-HHHHHHHHhCCeEEEe-cCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCC
Q 015325          243 YFHIYGL-FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG  320 (409)
Q Consensus       243 ~~~~~g~-~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~  320 (409)
                      ++|++|. ..+++++..|++++++ +.|++...+..|.++++|.++++|+++..|++.+..+..++++||.++.||++++
T Consensus       284 l~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dlln~~~~~~~~~s~lr~~vigGa~~s  363 (596)
T KOG1177|consen  284 LYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDLLNIPQKQQVDLSSLRKGVIGGAPVS  363 (596)
T ss_pred             hHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHHhcchhhccCchhhhhhheeCCCCCC
Confidence            9999997 8999999999999997 5699999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCceecccCcccccceecccC-CCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCcc
Q 015325          321 KDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV-GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI  399 (409)
Q Consensus       321 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~-~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v  399 (409)
                      +++++...+...-..+...||+||++...+... .++......++|+.+++.+.+|+| +.|..++-|..|||++||+++
T Consensus       364 ~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~-~~g~~v~~~~~Gel~iRGY~t  442 (596)
T KOG1177|consen  364 PELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVD-KDGSEVPLGTKGELLIRGYST  442 (596)
T ss_pred             HHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhccccccccccc-CCCCccccCCCceEEEEechh
Confidence            999999999773334777899999997666532 334445668999999999999999 999999999999999999999


Q ss_pred             ccccCCCCC
Q 015325          400 MKGIFLPHF  408 (409)
Q Consensus       400 ~~gY~~~~~  408 (409)
                      |.|||++++
T Consensus       443 Ml~Ywg~~~  451 (596)
T KOG1177|consen  443 MLGYWGEEE  451 (596)
T ss_pred             heeecCCcc
Confidence            999999775

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=5.4e-55  Score=428.66  Aligned_cols=365  Identities=30%  Similarity=0.434  Sum_probs=304.7

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      ..++.+.|.+.+..+    |+++|+++.+...++||+||.++++++|+.|++ .|+++||+|+|+++|++++++++|||+
T Consensus        10 ~~~~~~~l~~~a~~~----~~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~~v~~gdrVail~~N~~e~~~~~~a~~   84 (534)
T COG0318          10 ELTLASLLERAARRN----PDRPALIFLGRGGRLTYRELDRRANRLAAALQA-LGVKPGDRVAILLPNSPEFLIAFLAAL   84 (534)
T ss_pred             cccHHHHHHHHHHhC----CCceEEEEcCCCceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            489999999999999    999999997332349999999999999999999 899999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC----C-e-EEEeCCC------cchhhhcccCCcccc
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK----H-R-TILIDSP------EFDSMTMSWNSKHEL  184 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~----~-~-~~~~~~~------~~~~~~~~~~~~~~~  184 (409)
                      ++|++++|++|.+...++.++++.+++++++++.+.........    . . +......      .++......... ..
T Consensus        85 ~~Gav~vpln~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  163 (534)
T COG0318          85 RAGAVAVPLNPRLTPRELAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGP-DA  163 (534)
T ss_pred             hcCEEEeecCcccCHHHHHHHHHhcCCeEEEEcccchhHHHHHhccCCcceEEEecccccccccccHHHHhhccCCc-cc
Confidence            99999999999999999999999999999999987433333221    1 1 1111111      122322111110 11


Q ss_pred             cccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCC-CCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeE
Q 015325          185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAVMLFTMPYFHIYGL-FFCFRAAALMETA  262 (409)
Q Consensus       185 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~  262 (409)
                      .....+++++++++|||||||.||||++||++++.+.......+.. ++..|++++++|++|.+|+ ..++..+..|+++
T Consensus       164 ~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl~H~~Gl~~~~~~~~~~G~~~  243 (534)
T COG0318         164 DARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTL  243 (534)
T ss_pred             ccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcccCCCCceEEEecChHHHHHHHHHHHHHHHcCCEE
Confidence            1122578999999999999999999999999999988888887722 8899999999999999999 4566669999999


Q ss_pred             EEec--CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCC-cceeeecCCCCCHHHHHHHHHhCCCCceecc
Q 015325          263 VVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS-LETVACGAAPLGKDTIMAFASKFPKVVLVQA  339 (409)
Q Consensus       263 v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~-Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  339 (409)
                      ++.+  .+++..++..+.++++|++.++|+++..++........++++ ||.++.||++++++++++|++.|+..++++.
T Consensus       244 v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~  323 (534)
T COG0318         244 VLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEG  323 (534)
T ss_pred             EeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEe
Confidence            9998  599999999999999999999999999999998777666665 9999999999999999999999965789999


Q ss_pred             cCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       340 yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ||+||++..++...........+++|+|+||++++|+|++++.++| |+.|||+|+||+++.||||+|.
T Consensus       324 YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe  391 (534)
T COG0318         324 YGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPE  391 (534)
T ss_pred             ecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChH
Confidence            9999998766653322202467788999999999999976666667 9999999999999999999864

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.7e-55  Score=416.93  Aligned_cols=360  Identities=22%  Similarity=0.305  Sum_probs=298.5

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCC---CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVT---GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~---~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      +|+...+.++..+...  ++++|++++.+   .+++||+||.+.++++|+.|++..|+ +||||++++|+.+|.++++||
T Consensus         8 lN~~~n~~dr~~~~~~--~~~~aii~~~e~~~~~~~Ty~~L~~~v~r~A~~L~~~~gv-kGDrV~iymp~~pe~~~a~LA   84 (528)
T COG0365           8 LNLALNALDRHLEADR--PDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGV-KGDRVAIYMPNSPEAVIALLA   84 (528)
T ss_pred             eechhhhhhhhhhccC--CCceEEEEEcCCCCceEEEHHHHHHHHHHHHHHHHHhCCC-CCCEEEEEcCCCHHHHHHHHH
Confidence            6776665555543211  68899998633   27899999999999999999863567 999999999999999999999


Q ss_pred             HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCC---------eEEEeCC--CcchhhhcccCCccc
Q 015325          115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH---------RTILIDS--PEFDSMTMSWNSKHE  183 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~~~~~~~~~  183 (409)
                      |+++||+++++.+.++.+.+...+++++++++|+++......+....         .+++...  ..|.+.....+.  .
T Consensus        85 ~~riGAI~~~vf~~f~~~al~~Ri~d~~~k~vit~d~~~~~gk~~~~~~~~~~~~~~~iv~~r~~~~~~~~~~~~~~--~  162 (528)
T COG0365          85 TARIGAIPAVVSPGLSAEAVADRIADLGPKVLIADDGTFRNGKEIALLEDADAVLSSVVVVPRLGLWYDEAVEKASE--K  162 (528)
T ss_pred             HHHcCCEEeecccCCCHHHHHHHHHccCCCEEEEecccccccccccchhHHHHhhcceEEeccccccHHHHhhccCC--C
Confidence            99999999999999999999999999999999998765544332111         0222221  344554444332  2


Q ss_pred             ccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeE
Q 015325          184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETA  262 (409)
Q Consensus       184 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~  262 (409)
                      ........+|+++++|||||||+||||+++|..+.............+.++|++.+..+..|+.|. ..++.+|..|+++
T Consensus       163 ~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~~~~~~Dv~w~~ad~GW~~g~~~~v~~pL~~Gat~  242 (528)
T COG0365         163 FEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSSDPGWIYGLWYSVFSPLASGATT  242 (528)
T ss_pred             CCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhhCCCCCCEEEeCCCchhhhCchHHHHHHHhcCCeE
Confidence            333447889999999999999999999999998887776666544367799999999999999999 6699999999999


Q ss_pred             EEecC--C-CHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecc
Q 015325          263 VVMQR--F-DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA  339 (409)
Q Consensus       263 v~~~~--~-~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  339 (409)
                      ++.+.  + +++.+++.|+++++|+++..|+.++.|.+....+++++++||.+.+.|||++++.++++.+.+ |++|.+.
T Consensus       243 ~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLnpe~~~w~~~~~-g~~i~d~  321 (528)
T COG0365         243 VLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL-GVWILDI  321 (528)
T ss_pred             EEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCCHHHHHHHHHHh-CCCEecc
Confidence            99864  2 499999999999999999999999999998766778899999999999999999999999999 8999999


Q ss_pred             cCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecC--ccccccCCCCC
Q 015325          340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP--TIMKGIFLPHF  408 (409)
Q Consensus       340 yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~--~v~~gY~~~~~  408 (409)
                      ||+||+++....  ... ..++++.|+|+||+++.|+| ++|+++++|+ |+|+++.|  +++.|||++|+
T Consensus       322 ~gqTEtg~~~~~--~~~-~~~~g~~g~p~pG~~~~vvd-d~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~e  387 (528)
T COG0365         322 YGQTETGMGFIA--GRP-PVKNGSSGLPLPGYAVRRVD-DEGNPVPPGV-GELVVRLPWPGMALTYWNDPE  387 (528)
T ss_pred             ccccccCccccC--CCC-CcCCCCCCCCCCCceeEEEC-CCCCcCCCCc-eEEEEeCCCchhhhhhhCCHH
Confidence            999999854433  222 44566669999999999999 5699999999 99999987  99999999973

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=5.6e-54  Score=425.83  Aligned_cols=392  Identities=38%  Similarity=0.565  Sum_probs=317.3

Q ss_pred             cCCCCCCCCCCeeeecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHh
Q 015325            9 FDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQN   88 (409)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~   88 (409)
                      .+.-+.|++..+.+.+..|..+.|. +..+++.+.+.+. +..    |+++|+++...+.++||+||.++++++|+.|++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-~~~----~~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~   85 (560)
T PLN02574         12 NNPPFWYSPETGIYSSKHPPVPLPS-DPNLDAVSFIFSH-HNH----NGDTALIDSSTGFSISYSELQPLVKSMAAGLYH   85 (560)
T ss_pred             CCCccccCcCCeeecCCCCCCCCCC-CCCCCHHHHHhcC-ccc----CCCCEEEECCCCCcccHHHHHHHHHHHHHHHHH
Confidence            4445556667778887665544433 2346777777776 455    999999987555689999999999999999995


Q ss_pred             ccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCC
Q 015325           89 VTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS  168 (409)
Q Consensus        89 ~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~  168 (409)
                      +.|+++||+|+++++|+.++++++|||+++|+++++++|..+.+++.++++.+++++++++.+....+......++.+..
T Consensus        86 ~~G~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~v~l~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (560)
T PLN02574         86 VMGVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSPENVEKLSPLGVPVIGVPE  165 (560)
T ss_pred             HhCCCCCCEEEEECCCcchHHHHHHHHHHhCeEEeCcCcccCHHHHHHHHHhcCCEEEEECHHHHHHHHhcCCcEEecCc
Confidence            47999999999999999999999999999999999999999999999999999999999998776666544444443321


Q ss_pred             -----------CcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc----cCCCCCC
Q 015325          169 -----------PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA----SSPKRVS  233 (409)
Q Consensus       169 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~  233 (409)
                                 ..+..+......  ........++++++++|||||||.||+|++||+++...+.....    .......
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~  243 (560)
T PLN02574        166 NYDFDSKRIEFPKFYELIKEDFD--FVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGS  243 (560)
T ss_pred             ccccccCccCcccHHHHhhcCCc--ccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccccCCC
Confidence                       112222211111  11122345688999999999999999999999999887765543    1212345


Q ss_pred             CCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCC-CCCCCCCcce
Q 015325          234 PAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST-DGYDLSSLET  311 (409)
Q Consensus       234 ~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~-~~~~l~~Lr~  311 (409)
                      .++++..+|++|.+++ ..++.++..|+++++.+.+++..++..|+++++|++.++|+++..|.+.... ...++++||.
T Consensus       244 ~~~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~  323 (560)
T PLN02574        244 DNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQ  323 (560)
T ss_pred             CcEEEEecchHHHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceE
Confidence            6889999999999998 5677888899999999999999999999999999999999999999987543 3456889999


Q ss_pred             eeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcce
Q 015325          312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE  391 (409)
Q Consensus       312 v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Ge  391 (409)
                      +++||++++++++++|.+.++++.+++.||+||++...+...........+++|+|+++++++|+|+++|++++.|+.||
T Consensus       324 ~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Ge  403 (560)
T PLN02574        324 VSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGE  403 (560)
T ss_pred             EEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeE
Confidence            99999999999999999999889999999999998655432233333456899999999999999988999999999999


Q ss_pred             EEEecCccccccCCCCC
Q 015325          392 LSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       392 i~v~g~~v~~gY~~~~~  408 (409)
                      |+|+|++++.|||+++.
T Consensus       404 i~v~g~~~~~GY~~~~~  420 (560)
T PLN02574        404 LWIQGPGVMKGYLNNPK  420 (560)
T ss_pred             EEEECcchhhhhcCChh
Confidence            99999999999999874

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5.7e-54  Score=431.44  Aligned_cols=362  Identities=22%  Similarity=0.272  Sum_probs=285.8

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeC----C-CC--ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINS----V-TG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI  110 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~----~-~~--~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~  110 (409)
                      .|+.++|.+.++++    |+++|++..    . .+  .++||+||.++++++|++|++ +|+++||+|+|+++|+++|++
T Consensus        45 ~t~~~~l~~~a~~~----pd~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~Gd~Vai~~~n~~e~~~  119 (666)
T PLN02614         45 DSCWDVFRMSVEKY----PNNPMLGRREIVDGKPGKYVWQTYQEVYDIVIKLGNSLRS-VGVKDEAKCGIYGANSPEWII  119 (666)
T ss_pred             CcHHHHHHHHHHhC----CCCCeEEEecccCCCCCCcEEeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHH
Confidence            58999999999998    999999842    1 12  358999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc------CCe-EEEeCCC--------------
Q 015325          111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHR-TILIDSP--------------  169 (409)
Q Consensus       111 ~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~-~~~~~~~--------------  169 (409)
                      +++||+++|++++|+++.++.+++.+++++++++++|++.+....+...      ..+ ++.++..              
T Consensus       120 ~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~  199 (666)
T PLN02614        120 SMEACNAHGLYCVPLYDTLGAGAVEFIISHSEVSIVFVEEKKISELFKTCPNSTEYMKTVVSFGGVSREQKEEAETFGLV  199 (666)
T ss_pred             HHHHHHHcCCEEEEecCCCCHHHHHHHHhccCCCEEEECHHHHHHHHHhcccccccceEEEEeCCCChHHhhhhhhcCcE
Confidence            9999999999999999999999999999999999999987655443211      012 3333211              


Q ss_pred             --cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC----CCCCCCCEEEEeCch
Q 015325          170 --EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS----PKRVSPAVMLFTMPY  243 (409)
Q Consensus       170 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~d~~l~~~p~  243 (409)
                        .++++....... ........++|+++|+|||||||.||||++||+++...+......+    ..+..+|++++.+|+
T Consensus       200 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl  278 (666)
T PLN02614        200 IYAWDEFLKLGEGK-QYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPL  278 (666)
T ss_pred             EEEHHHHHhhcccC-CCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhhccccccCCCCCcEEEEeccH
Confidence              122222211110 1111234578999999999999999999999999988776554432    136788999999999


Q ss_pred             hhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCC----------------------
Q 015325          244 FHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST----------------------  301 (409)
Q Consensus       244 ~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~----------------------  301 (409)
                      +|.++....+.++..|+++++.+ +++..+++.|+++++|+++++|++++.+......                      
T Consensus       279 ~H~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~  357 (666)
T PLN02614        279 AHIFDRVIEECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFG  357 (666)
T ss_pred             HHHHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            99999865667788999998875 5899999999999999999999999987642100                      


Q ss_pred             ---------CCC-------------CC-CCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCC
Q 015325          302 ---------DGY-------------DL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC  358 (409)
Q Consensus       302 ---------~~~-------------~l-~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~  358 (409)
                               ...             .+ ++||.+++||+++++.+ ++|.+.++++++++.||+||+++..+.. .....
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~~~~~i~~~YG~TE~~~~~~~~-~~~~~  435 (666)
T PLN02614        358 NMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVVACCHVLQGYGLTESCAGTFVS-LPDEL  435 (666)
T ss_pred             HHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHhcCCCEEeeCchHhhhhheeee-ccccC
Confidence                     000             01 58999999999999875 6777777568999999999987654432 22222


Q ss_pred             CCCCccccccCCceEEEecC-C-CCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          359 RRWGSTGRLSAGLEAKIVDP-E-TGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       359 ~~~~s~G~p~~~~~v~i~d~-~-~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ...+++|+|+||++++|+|+ + .++++++|+.|||+|+||+++.|||++|+
T Consensus       436 ~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe  487 (666)
T PLN02614        436 DMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKRED  487 (666)
T ss_pred             CcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHH
Confidence            35689999999999999983 3 34789999999999999999999999875

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.8e-53  Score=419.78  Aligned_cols=360  Identities=21%  Similarity=0.229  Sum_probs=299.7

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|.+.++++    |+++|+++.. ..++||+||.++++++|+.|.+    .+||+|+++++|+++++++++||++
T Consensus        19 ~~~~~~~~~~~~~~----p~~~a~~~~~-~~~~Ty~el~~~~~~lA~~L~~----~~gd~Val~~~n~~e~~~~~lA~~~   89 (539)
T PRK06334         19 KTVLESFLKLCSEM----TTATVCWDEQ-LGKLSYNQVRKAVIALATKVSK----YPDQHIGIMMPASAGAYIAYFATLL   89 (539)
T ss_pred             CcHHHHHHHHHHhC----CCceEEEeCC-CCcccHHHHHHHHHHHHHHHhh----ccCCeEEEEcCCchHHHHHHHHHHh
Confidence            67999999999999    9999998762 3689999999999999999997    3899999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC-------CeEEEeCCC----cchhhhcccC----Ccc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-------HRTILIDSP----EFDSMTMSWN----SKH  182 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~~~~~~~~~----~~~~~~~~~~----~~~  182 (409)
                      +|++++|+++..+.+++.++++.+++++++++.+....+.+..       ..++..+..    .+.+......    ...
T Consensus        90 ~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (539)
T PRK06334         90 SGKIPVMINWSQGLREVTACANLVGVTHVLTSKQLMQHLAQTHGEDAEYPFSLIYMEEVRKELSFWEKCRIGIYMSIPFE  169 (539)
T ss_pred             cCCeeEecCcccchHHHHHHHHHcCCCEEEehHHHHHHHhhhhhccccccccEEEEehhhhhccHHHhhhhhhhhcCCch
Confidence            9999999999999999999999999999999877655543221       123322210    0001000000    000


Q ss_pred             ----cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHH
Q 015325          183 ----ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAA  257 (409)
Q Consensus       183 ----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~  257 (409)
                          ........++++++|+|||||||.||+|++||+++..........+ ....+|++++.+|++|.+++ ..++.++.
T Consensus       170 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~  248 (539)
T PRK06334        170 WLMRWFGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-SPKEDDVMMSFLPPFHAYGFNSCTLFPLL  248 (539)
T ss_pred             hhhhcccCCCCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCCCceEEEecchHhhhhhHHHHHHHHH
Confidence                0011234678999999999999999999999999998877776666 67889999999999999998 56789999


Q ss_pred             hCCeEEEec-CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCce
Q 015325          258 LMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL  336 (409)
Q Consensus       258 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i  336 (409)
                      .|+++++.. .+++..+++.|+++++|++.++|+++..|++........+++||.+++||+++++++.++|++.|+++.+
T Consensus       249 ~G~~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i  328 (539)
T PRK06334        249 SGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQL  328 (539)
T ss_pred             cCCeEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCCCCeE
Confidence            999999875 5799999999999999999999999999988765555678899999999999999999999999988999


Q ss_pred             ecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       337 ~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ++.||+||++..++... .......+++|+|++|++++|+|+++++++++|+.|||+|+|++++.|||+++.
T Consensus       329 ~~~YG~TE~~~~~~~~~-~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~  399 (539)
T PRK06334        329 RQGYGTTECSPVITINT-VNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDF  399 (539)
T ss_pred             EecccccccCceEEecc-CCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcc
Confidence            99999999987665422 222234567999999999999997789999999999999999999999999874

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-53  Score=426.29  Aligned_cols=363  Identities=19%  Similarity=0.218  Sum_probs=291.3

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCC---ceeeHHHHHHHHHHHHHHhHhcc---CCCCC-----------CEEE
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTG---LRVSFSEFTRRTNSLASYLQNVT---RLSKN-----------DTAF   99 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~---~~~Ty~el~~~~~~la~~L~~~~---gv~~g-----------~~V~   99 (409)
                      .-|+.++|.+.++++    |+++|+++...+   +++||+|+.+++.++|++|.+ .   |+++|           |+|+
T Consensus        60 ~~~l~~~l~~~~~~~----p~~~Al~~~~~g~~~~~~Ty~el~~~v~~~A~~L~~-~~~~Gv~~g~~~~~~~~g~~d~V~  134 (746)
T PTZ00342         60 YKHIMKLLLEKYKLN----NNKIAIVEHSCGEPQNYITYGNFFKKVLSFSHSLNT-YEGKGIPEKKYNEEQNNGKFKLLG  134 (746)
T ss_pred             cchHHHHHHHHHhhc----CCceeEeccCCCCCceeeeHHHHHHHHHHHHHHHHH-HhhcCCCcCccccccccccccEEE
Confidence            479999999999999    999999874222   689999999999999999997 5   99999           9999


Q ss_pred             EEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CC-eEEEeCCCcch-
Q 015325          100 VLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSPEFD-  172 (409)
Q Consensus       100 i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~~~~-  172 (409)
                      |+++|+++|+++.+||+++|++.||+++.++.+++.+++++++++++|++.+..+.+.+.     .+ .++.++..... 
T Consensus       135 i~~~N~~ew~~~~lA~~~~Gav~Vpl~~~~~~~el~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~  214 (746)
T PTZ00342        135 LYGSNSINWLVADLACMLSGVTTLVMHSKFSIDVIVDILNETKLEWLCLDLDLVEGLLERKNELPHLKKLIILDTLIKSK  214 (746)
T ss_pred             EEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHhcCCCCEEEEcHHHHHHHHHhhccCCCceEEEEECCCCccc
Confidence            999999999999999999999999999999999999999999999999987665554321     11 23344321000 


Q ss_pred             -------------------------------------------------------hhhcccCC---------------cc
Q 015325          173 -------------------------------------------------------SMTMSWNS---------------KH  182 (409)
Q Consensus       173 -------------------------------------------------------~~~~~~~~---------------~~  182 (409)
                                                                             ++......               ..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  294 (746)
T PTZ00342        215 EININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGISIILFDDMTKNKTT  294 (746)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhHHHHHHhhcCCCEEEEHHHHHhhccc
Confidence                                                                   00000000               00


Q ss_pred             cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCC-CCCCCCEEEEeCchhhHHhHHHHHHHHHhCCe
Q 015325          183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP-KRVSPAVMLFTMPYFHIYGLFFCFRAAALMET  261 (409)
Q Consensus       183 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~  261 (409)
                      ........++|+++|+|||||||.||||++||++++..+........ .....+++++.+|++|++++...+.++..|++
T Consensus       295 ~~~~~~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~~~~~~d~~ls~LPL~Hi~~~~~~~~~l~~G~~  374 (746)
T PTZ00342        295 NYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIFKKYNPKTHLSYLPISHIYERVIAYLSFMLGGT  374 (746)
T ss_pred             CCCCCCCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccccCCCCCeEEEeCcHHHHHHHHHHHHHHHcCCE
Confidence            00112345789999999999999999999999999988766543320 12356899999999999999777888999999


Q ss_pred             EEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhC--------CCCCC------------------------------
Q 015325          262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG--------GSTDG------------------------------  303 (409)
Q Consensus       262 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~--------~~~~~------------------------------  303 (409)
                      +++.+. ++..+++.|+++++|+++++|.+++++...        +..+.                              
T Consensus       375 i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~  453 (746)
T PTZ00342        375 INIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISS  453 (746)
T ss_pred             EEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            999875 899999999999999999999999988752        10000                              


Q ss_pred             ----CCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCcccccc-CCceEEEecC
Q 015325          304 ----YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDP  378 (409)
Q Consensus       304 ----~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~-~~~~v~i~d~  378 (409)
                          .-.++||.+++||+++++++.++|+..+ ++++++.||+||+++.++..  .......+++|+|+ |+++++|+|.
T Consensus       454 kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~-g~~i~~gYGlTEt~~~~~~~--~~~~~~~gsvG~p~~pg~e~ki~d~  530 (746)
T PTZ00342        454 KIKDKVNPNLEVILNGGGKLSPKIAEELSVLL-NVNYYQGYGLTETTGPIFVQ--HADDNNTESIGGPISPNTKYKVRTW  530 (746)
T ss_pred             HHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhc-CCCEEEeeccCcccceeeec--cCCCCCcccccCcCCCcEEEEEecc
Confidence                0025899999999999999999999988 89999999999998766542  23345678999998 9999999996


Q ss_pred             CCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          379 ETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       379 ~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +++...+.+..|||+++||++|.|||++|+
T Consensus       531 ~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe  560 (746)
T PTZ00342        531 ETYKATDTLPKGELLIKSDSIFSGYFLEKE  560 (746)
T ss_pred             cccccCCCCCceEEEEecCcccccccCChh
Confidence            666666666789999999999999999875

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5e-53  Score=418.55  Aligned_cols=355  Identities=21%  Similarity=0.240  Sum_probs=302.7

Q ss_pred             CHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHh
Q 015325           39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL  118 (409)
Q Consensus        39 ~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~  118 (409)
                      ++.+++.+.++++    ||++|++++  ++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+++
T Consensus        50 ~~~~~~~~~a~~~----pd~~Al~~~--~~~~Ty~el~~~~~~la~~L~~-~gi~~gd~V~i~~~n~~~~~~~~la~~~~  122 (549)
T PRK07788         50 PFAGLVAHAARRA----PDRAALIDE--RGTLTYAELDEQSNALARGLLA-LGVRAGDGVAVLARNHRGFVLALYAAGKV  122 (549)
T ss_pred             hHHHHHHHHHHHC----CCceEEEEC--CCceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhc
Confidence            7899999999988    999999987  7899999999999999999999 99999999999999999999999999999


Q ss_pred             CCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC-----CeEEEeCC----------CcchhhhcccCCccc
Q 015325          119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----HRTILIDS----------PEFDSMTMSWNSKHE  183 (409)
Q Consensus       119 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~----------~~~~~~~~~~~~~~~  183 (409)
                      |++++|+++.++.+++.+++++++++++|++++....+....     ...+....          ..++++.....    
T Consensus       123 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  198 (549)
T PRK07788        123 GARIILLNTGFSGPQLAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSS----  198 (549)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhcCCcEEEECchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCC----
Confidence            999999999999999999999999999999987766554321     12221111          12222222211    


Q ss_pred             ccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEE
Q 015325          184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV  263 (409)
Q Consensus       184 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v  263 (409)
                      ........++.++++|||||||.||+|.++|+++...+......+ .....++++...|++|.+++..++.++..|++++
T Consensus       199 ~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v  277 (549)
T PRK07788        199 TAPLPKPPKPGGIVILTSGTTGTPKGAPRPEPSPLAPLAGLLSRV-PFRAGETTLLPAPMFHATGWAHLTLAMALGSTVV  277 (549)
T ss_pred             CCCCCCCCCCCcEEEECCCCCCCCCEEeccCccHHHHHHHHHhhC-CCCcCCeEEEccchHHHHHHHHHHHHHHhCCEEE
Confidence            111123356789999999999999999999999998877777777 6788999999999999999977888999999999


Q ss_pred             EecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCC--CCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccC
Q 015325          264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG  341 (409)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  341 (409)
                      +...+++..+++.++++++|++.++|+++..+++....  ...++++||.+++||+++++++.++|++.| +..+++.||
T Consensus       278 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~l~~~YG  356 (549)
T PRK07788        278 LRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAF-GPVLYNLYG  356 (549)
T ss_pred             ECCCCCHHHHHHHHHHhCCcEEEEHHHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHh-CccceeccC
Confidence            99889999999999999999999999999999987654  455688999999999999999999999999 788999999


Q ss_pred             cccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       342 ~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +||++...+.. .......++++|+|+++++++|+| ++|++++.|+.|||+|+|+.++.||++++.
T Consensus       357 ~TE~~~~~~~~-~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~  421 (549)
T PRK07788        357 STEVAFATIAT-PEDLAEAPGTVGRPPKGVTVKILD-ENGNEVPRGVVGRIFVGNGFPFEGYTDGRD  421 (549)
T ss_pred             cchhchhhccC-hhhhhhcCCCcccCCCCcEEEEEC-CCcCCCCCCCeEEEEEeCCCccccccCCCc
Confidence            99987644332 122234567899999999999999 899999999999999999999999998764

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=6.2e-52  Score=409.63  Aligned_cols=376  Identities=34%  Similarity=0.514  Sum_probs=312.9

Q ss_pred             eecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEE
Q 015325           22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVL  101 (409)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~  101 (409)
                      +.+..+..+++.   .+|+.+++.+++.++    |+++|+++..+++++||.||.++++++|+.|++ .|+++||+|+++
T Consensus        10 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~a~~~~~~~~~~ty~el~~~~~~la~~L~~-~g~~~gd~V~i~   81 (537)
T PLN02246         10 FRSKLPDIYIPN---HLPLHDYCFERLSEF----SDRPCLIDGATGRVYTYADVELLSRRVAAGLHK-LGIRQGDVVMLL   81 (537)
T ss_pred             ecCCCCCCCCCC---CCcHHHHHHHHHHhC----CCCeEEEecCCCceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEE
Confidence            344444444443   479999999999988    999999986556789999999999999999999 999999999999


Q ss_pred             cCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCeEEEeCCCc-----ch
Q 015325          102 STNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILIDSPE-----FD  172 (409)
Q Consensus       102 ~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~~~~-----~~  172 (409)
                      ++|+.+++++++||+++|++++|+++..+.+++..+++.+++++++++......+.+.    ...++.++...     +.
T Consensus        82 ~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  161 (537)
T PLN02246         82 LPNCPEFVLAFLGASRRGAVTTTANPFYTPAEIAKQAKASGAKLIITQSCYVDKLKGLAEDDGVTVVTIDDPPEGCLHFS  161 (537)
T ss_pred             CCCChHHHHHHHHHHHcCEEEecCCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHHhhcCCceEEEeCCCCCCceeHH
Confidence            9999999999999999999999999999999999999999999999988766554332    23344443211     12


Q ss_pred             hhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc----cCCCCCCCCEEEEeCchhhHHh
Q 015325          173 SMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA----SSPKRVSPAVMLFTMPYFHIYG  248 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~d~~l~~~p~~~~~g  248 (409)
                      ++.....  .........++++++++|||||||.||+|+++|+++.........    .+ .+..+|++++..|++|.++
T Consensus       162 ~~~~~~~--~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~~  238 (537)
T PLN02246        162 ELTQADE--NELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-YFHSDDVILCVLPMFHIYS  238 (537)
T ss_pred             HHhcCCC--CCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcccccc-CCCCCcEEEEeechHHHHH
Confidence            2221111  012223345789999999999999999999999999877665433    34 5788999999999999999


Q ss_pred             H-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHH
Q 015325          249 L-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAF  327 (409)
Q Consensus       249 ~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~  327 (409)
                      + ..++.++..|+++++.+.+++..++..|+++++|++.++|+++..|.+........++++|.+++||+++++++.+.|
T Consensus       239 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~  318 (537)
T PLN02246        239 LNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAF  318 (537)
T ss_pred             HHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHHHHHHH
Confidence            8 667889999999999999999999999999999999999999999988766555678899999999999999999999


Q ss_pred             HHhCCCCceecccCcccccceecccCC---CCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccC
Q 015325          328 ASKFPKVVLVQAYGLTESTAGVFRTVG---PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF  404 (409)
Q Consensus       328 ~~~~~~~~i~~~yG~tE~~~~~~~~~~---~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~  404 (409)
                      ++.|++..+++.||+||++..++....   ......++++|+|+++++++|+|++++++++.|+.|||+++|+.++.|||
T Consensus       319 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~  398 (537)
T PLN02246        319 RAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYL  398 (537)
T ss_pred             HHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhcccc
Confidence            999989999999999999765443111   11223457899999999999999889999999999999999999999999


Q ss_pred             CCCC
Q 015325          405 LPHF  408 (409)
Q Consensus       405 ~~~~  408 (409)
                      +++.
T Consensus       399 ~~~~  402 (537)
T PLN02246        399 NDPE  402 (537)
T ss_pred             CCch
Confidence            9864

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=1.3e-52  Score=421.92  Aligned_cols=361  Identities=22%  Similarity=0.292  Sum_probs=283.7

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeC-----CCC--ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINS-----VTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI  110 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~-----~~~--~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~  110 (409)
                      .|+.++|.+.++++    |+++|+...     ..+  +++||+||.++++++|++|.+ +|+++||+|+|+++|+++|++
T Consensus        43 ~t~~~~l~~~~~~~----p~~~al~~~~~~~~~~g~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~e~~~  117 (660)
T PLN02861         43 DSPWQFFSDAVKKY----PNNQMLGRRQVTDSKVGPYVWLTYKEVYDAAIRIGSAIRS-RGVNPGDRCGIYGSNCPEWII  117 (660)
T ss_pred             CCHHHHHHHHHHhC----CCCCeEEEEecCCCCCCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHH
Confidence            58899999999999    999999641     112  479999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc------CCe-EEEeCCC--------------
Q 015325          111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHR-TILIDSP--------------  169 (409)
Q Consensus       111 ~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~-~~~~~~~--------------  169 (409)
                      +++||+++|++++|+++.++.+++.+++++++++++|++.+....+...      ..+ ++..+..              
T Consensus       118 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  197 (660)
T PLN02861        118 AMEACNSQGITYVPLYDTLGANAVEFIINHAEVSIAFVQESKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVS  197 (660)
T ss_pred             HHHHHHHcCCeEEEecCCCCHHHHHHHHHcCCCCEEEECHHHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcE
Confidence            9999999999999999999999999999999999999987655443221      122 2222211              


Q ss_pred             --cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCC----CCCCCCEEEEeCch
Q 015325          170 --EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP----KRVSPAVMLFTMPY  243 (409)
Q Consensus       170 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~----~~~~~d~~l~~~p~  243 (409)
                        .+.++......  ........++|+++|+|||||||.||||++||++++..+......+.    ....+|++++.+|+
T Consensus       198 ~~~~~~~~~~~~~--~~~~~~~~~dd~a~i~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~~~~~~d~~l~~lPl  275 (660)
T PLN02861        198 CFSWEEFSLMGSL--DCELPPKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPL  275 (660)
T ss_pred             EEEHHHHHHhCcc--cCCCCccCCCceEEEEecCCCCCCCCEEEEecHHHHHHHHHHHhccccccccCCCCCEEEEECcH
Confidence              12222221110  11112345789999999999999999999999999988766555431    14678999999999


Q ss_pred             hhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCC------------------------
Q 015325          244 FHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG------------------------  299 (409)
Q Consensus       244 ~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~------------------------  299 (409)
                      +|.++....+.++..|+++++.. +++..+++.|+++++|+++++|.+++.+....                        
T Consensus       276 ~H~~~~~~~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~  354 (660)
T PLN02861        276 AHVYDQVIETYCISKGASIGFWQ-GDIRYLMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLG  354 (660)
T ss_pred             HHHHHHHHHHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            99999855666899999998874 58999999999999999999999999886410                        


Q ss_pred             -------------CCCCC-------CC-CCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCC
Q 015325          300 -------------STDGY-------DL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC  358 (409)
Q Consensus       300 -------------~~~~~-------~l-~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~  358 (409)
                                   .....       .+ .+||.+++||+++++++. +|.+.++...+++.||+||+++.++... ....
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Ggapl~~~~~-~~~~~~~~~~l~~~YG~TE~~~~~~~~~-~~~~  432 (660)
T PLN02861        355 NLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAAPLPRHVE-EFLRVTSCSVLSQGYGLTESCGGCFTSI-ANVF  432 (660)
T ss_pred             HHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHH-HHHHHHcCCCeeEecchhhhhhceeecc-cccC
Confidence                         00000       01 479999999999999975 5667764457999999999976554422 1222


Q ss_pred             CCCCccccccCCceEEEec-CCCC-CCCCCCCcceEEEecCccccccCCCCC
Q 015325          359 RRWGSTGRLSAGLEAKIVD-PETG-DSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       359 ~~~~s~G~p~~~~~v~i~d-~~~g-~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ...+++|+|+|+++++|+| +++| ..+++++.|||+|+||+++.|||++|+
T Consensus       433 ~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~vrGp~v~~GY~~~pe  484 (660)
T PLN02861        433 SMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQD  484 (660)
T ss_pred             CCCCCccCccCceEEEEEEccccCcccCCCCCceeEEEcCCcccccccCCHH
Confidence            3568999999999999998 3445 455667789999999999999999875

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=8.6e-52  Score=416.45  Aligned_cols=363  Identities=21%  Similarity=0.227  Sum_probs=292.1

Q ss_pred             CCCCCHHHHHhhccCCCCCCCCCCcEEEe---CCC----CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCc
Q 015325           35 DAPISAVDYVSSLRATLPWRDDDTVALIN---SVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE  107 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~---~~~----~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~  107 (409)
                      ....++.++|...++++    |+++|+..   .+.    -+.+||+||.++++++|++|++ .|+++||+|+|+++|+++
T Consensus        41 ~~~~tl~~~l~~~a~~~----p~~~al~~~~~~~~~~~~~~~lTy~el~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~e  115 (651)
T PLN02736         41 PEIGTLHDNFVYAVETF----RDYKYLGTRIRVDGTVGEYKWMTYGEAGTARTAIGSGLVQ-HGIPKGACVGLYFINRPE  115 (651)
T ss_pred             CCCCCHHHHHHHHHHhC----CCCCeEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHH
Confidence            33468999999999988    99999942   111    1469999999999999999999 999999999999999999


Q ss_pred             hHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CCe-EEEeCCC------------
Q 015325          108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDSP------------  169 (409)
Q Consensus       108 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~~------------  169 (409)
                      |+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+...     ..+ ++..+..            
T Consensus       116 ~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~  195 (651)
T PLN02736        116 WLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTG  195 (651)
T ss_pred             HHHHHHHHHHcCCeEEEeecCCCHHHHHHHHhccCCCEEEECHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCC
Confidence            9999999999999999999999999999999999999999987765544321     112 2222210            


Q ss_pred             ----cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhh
Q 015325          170 ----EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFH  245 (409)
Q Consensus       170 ----~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~  245 (409)
                          .++++....... ........++++++|+|||||||.||||++||++++..+......+ ...+.|++++.+|++|
T Consensus       196 ~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~IlyTSGTTG~PKGV~lsh~~l~~~~~~~~~~~-~~~~~d~~l~~lPl~h  273 (651)
T PLN02736        196 VEIVTYSKLLAQGRSS-PQPFRPPKPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLST-KFYPSDVHISYLPLAH  273 (651)
T ss_pred             cEEEEHHHHHHhcccC-CCCCCCCCccceEEEEEcCCCCCCCcEEEEecHHHHHHHHHHHhcc-CCCCCCEEEEeCCHHH
Confidence                122222221110 1112234678999999999999999999999999999888887777 6888999999999999


Q ss_pred             HHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCC-------------------------
Q 015325          246 IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS-------------------------  300 (409)
Q Consensus       246 ~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~-------------------------  300 (409)
                      .+++..++.++..|+++++.+. ++..+++.|+++++|+++++|.++..+.+...                         
T Consensus       274 ~~~~~~~~~~l~~G~~i~~~~~-~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (651)
T PLN02736        274 IYERVNQIVMLHYGVAVGFYQG-DNLKLMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQAL  352 (651)
T ss_pred             HHHHHHHHHHHHcCCEEEEeCC-CHHHHHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            9999888889999999988875 78999999999999999999999988765310                         


Q ss_pred             ---CC-C------------CCC-CCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCc
Q 015325          301 ---TD-G------------YDL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS  363 (409)
Q Consensus       301 ---~~-~------------~~l-~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s  363 (409)
                         .. .            ..+ ++||.+++||+++++++.+++++.+ ++++++.||+||+++.++..  .......++
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~l~~~~~~~~~~~~-g~~~~~~YG~TE~~~~~~~~--~~~~~~~~~  429 (651)
T PLN02736        353 ENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASPLSPDVMEFLRICF-GGRVLEGYGMTETSCVISGM--DEGDNLSGH  429 (651)
T ss_pred             HcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCCCCHHHHHHHHHHh-CCCeEEEechHHhchheecc--CCCCCCCCc
Confidence               00 0            001 4799999999999999999999988 88999999999998766542  223356789


Q ss_pred             cccccCCceEEEecCCCCC---CCCCCCcceEEEecCccccccCCCCC
Q 015325          364 TGRLSAGLEAKIVDPETGD---SLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       364 ~G~p~~~~~v~i~d~~~g~---~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +|+|+||++++|+|.+++.   ...++..|||+|+||++|.|||++|+
T Consensus       430 vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vrgp~v~~GY~~~~~  477 (651)
T PLN02736        430 VGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVRGPIIFKGYYKDEV  477 (651)
T ss_pred             cCCccCceEEEEEEccccCcccCCCCCCCceEEecCCccccccccCHH
Confidence            9999999999999944433   22344579999999999999999874

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=7.6e-52  Score=416.74  Aligned_cols=365  Identities=17%  Similarity=0.205  Sum_probs=292.6

Q ss_pred             CCCCCHHHHHhhccC--CCCCCCCCCcEEEeCC----CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCch
Q 015325           35 DAPISAVDYVSSLRA--TLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI  108 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~--~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~  108 (409)
                      +..+|++..+.++..  .+    |+++|+++..    ..+++||+||.++++++|+.|++ .|+++||+|+++++|++++
T Consensus        84 g~~~N~~~~~l~~~~~~~~----~~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrV~i~~pn~~e~  158 (666)
T PLN02654         84 GGKTNICYNCLDRNVEAGN----GDKIAIYWEGNEPGFDASLTYSELLDRVCQLANYLKD-VGVKKGDAVVIYLPMLMEL  158 (666)
T ss_pred             CCEeeHHHHHHHHhhccCC----CCCEEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHH
Confidence            556899887776543  35    9999998742    13689999999999999999999 9999999999999999999


Q ss_pred             HHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHH---------H----hhc-----CCe-EEEeCCC
Q 015325          109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHK---------L----AKL-----KHR-TILIDSP  169 (409)
Q Consensus       109 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~---------~----~~~-----~~~-~~~~~~~  169 (409)
                      ++++|||+++|++++|+++.++.+++..++++++++++|+++.....         +    ...     ... ++.....
T Consensus       159 v~a~lA~~~~Gav~vpv~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (666)
T PLN02654        159 PIAMLACARIGAVHSVVFAGFSAESLAQRIVDCKPKVVITCNAVKRGPKTINLKDIVDAALDESAKNGVSVGICLTYENQ  238 (666)
T ss_pred             HHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHHHHhccccCCCccEEEEeccc
Confidence            99999999999999999999999999999999999999998753211         1    000     000 1111110


Q ss_pred             ----------------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHH-HHhhccCCCCC
Q 015325          170 ----------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-ASSFASSPKRV  232 (409)
Q Consensus       170 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~-~~~~~~~~~~~  232 (409)
                                      .|+++.....  ..........+++++|+|||||||.||||+++|++++... ......+ .++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-~~~  315 (666)
T PLN02654        239 LAMKREDTKWQEGRDVWWQDVVPNYP--TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-DYK  315 (666)
T ss_pred             ccccccccccccCCcccHHHHhhcCC--CCCCceecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-CCC
Confidence                            0111111100  0111122467899999999999999999999999986443 4444555 688


Q ss_pred             CCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCC
Q 015325          233 SPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYD  305 (409)
Q Consensus       233 ~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~  305 (409)
                      ++|++++..|++|.++. +.++.+++.|+++++.++    +++..+++.|+++++|++.++|+++..|.+...  ....+
T Consensus       316 ~~d~~~~~~~~~~~~g~~~~~~~~L~~G~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~  395 (666)
T PLN02654        316 PTDVYWCTADCGWITGHSYVTYGPMLNGATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHS  395 (666)
T ss_pred             CCcEEEEcCCchhhhhhHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCC
Confidence            99999999999999987 678899999999999864    589999999999999999999999999998653  23456


Q ss_pred             CCCcceeeecCCCCCHHHHHHHHHhCCC--CceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCC
Q 015325          306 LSSLETVACGAAPLGKDTIMAFASKFPK--VVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDS  383 (409)
Q Consensus       306 l~~Lr~v~~~G~~~~~~~~~~~~~~~~~--~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~  383 (409)
                      +++||.++++|+++++++++++.+.++.  +++.+.||+||+++..+..........++++|+|++|++++|+| ++|++
T Consensus       396 l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~g~~  474 (666)
T PLN02654        396 RKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGKE  474 (666)
T ss_pred             hhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEEC-CCCCC
Confidence            8899999999999999999999999842  78999999999987655422111235678999999999999999 89999


Q ss_pred             CCCCCcceEEEec--CccccccCCCCC
Q 015325          384 LPPGKEGELSIRG--PTIMKGIFLPHF  408 (409)
Q Consensus       384 ~~~g~~Gei~v~g--~~v~~gY~~~~~  408 (409)
                      ++.|+.|||++++  |+++.|||++++
T Consensus       475 ~~~~~~Gel~v~~~~p~~~~gy~~~~~  501 (666)
T PLN02654        475 IEGECSGYLCVKKSWPGAFRTLYGDHE  501 (666)
T ss_pred             CCCCCceEEEEcCCCchhhhhhcCChH
Confidence            9999999999999  799999999874

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=1.2e-51  Score=409.36  Aligned_cols=360  Identities=22%  Similarity=0.255  Sum_probs=293.5

Q ss_pred             CCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      +.+.|+.+.|.+.+.++    |+++|++++  ++++||+||.++++++|++|.+ .|+++||+|+++++|+++++++++|
T Consensus         4 ~~~~~~~~~~~~~~~~~----p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~-~Gv~~gd~V~v~~~n~~~~~~~~la   76 (563)
T PLN02860          4 HSQAHICQCLTRLATLR----GNAVVTISG--NRRRTGHEFVDGVLSLAAGLLR-LGLRNGDVVAIAALNSDLYLEWLLA   76 (563)
T ss_pred             hhhhHHHHHHHHHHHhc----CCceEEecC--CceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            44589999999999999    999999986  7899999999999999999999 9999999999999999999999999


Q ss_pred             HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc------CCe-EEEeCCCc------chhhhcccC--
Q 015325          115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHR-TILIDSPE------FDSMTMSWN--  179 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~-~~~~~~~~------~~~~~~~~~--  179 (409)
                      |+++|++++|+++.++.+++.++++++++++++++++........      ... .+..+...      +........  
T Consensus        77 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  156 (563)
T PLN02860         77 VACAGGIVAPLNYRWSFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLK  156 (563)
T ss_pred             HhhccEEEEeCCcccCHHHHHHHHHhcCceEEEEecccchHHHHHhhccCCceeEEEEecCcccccccchhhccccchhc
Confidence            999999999999999999999999999999999987542222111      111 11111110      111110000  


Q ss_pred             ---CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHH
Q 015325          180 ---SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA  256 (409)
Q Consensus       180 ---~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l  256 (409)
                         ...........++++++++|||||||.||+|.++|+++..........+ +..+.|+++...|++|.+++..++.++
T Consensus       157 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~l  235 (563)
T PLN02860        157 QRALGTTELDYAWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-GYGEDDVYLHTAPLCHIGGLSSALAML  235 (563)
T ss_pred             cCccccccccCCCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-CCCCCCEEEEecCchhhccHHHHHHHH
Confidence               0000111234568899999999999999999999999987776665556 678899999999999999998889999


Q ss_pred             HhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCC--CCCCCCCcceeeecCCCCCHHHHHHHHHhCCCC
Q 015325          257 ALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKV  334 (409)
Q Consensus       257 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~  334 (409)
                      ..|+++++.+.+++..+++.|+++++|++.++|+++..|++....  ....+++||.+++||+++++++.++|++.|+++
T Consensus       236 ~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~  315 (563)
T PLN02860        236 MVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNA  315 (563)
T ss_pred             HcCceEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999876432  234578999999999999999999999999889


Q ss_pred             ceecccCcccccceecccCCCC---------------------CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEE
Q 015325          335 VLVQAYGLTESTAGVFRTVGPD---------------------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELS  393 (409)
Q Consensus       335 ~i~~~yG~tE~~~~~~~~~~~~---------------------~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~  393 (409)
                      ++++.||+||+++.++......                     ......++|+|+++++++|+|+ +     +|+.|||+
T Consensus       316 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~-~-----~g~~Gel~  389 (563)
T PLN02860        316 KLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLD-E-----SSRVGRIL  389 (563)
T ss_pred             ceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecC-C-----CCceeEEE
Confidence            9999999999976544321111                     0111236899999999999994 3     68999999


Q ss_pred             EecCccccccCCCCC
Q 015325          394 IRGPTIMKGIFLPHF  408 (409)
Q Consensus       394 v~g~~v~~gY~~~~~  408 (409)
                      ++|++++.|||++|.
T Consensus       390 v~g~~~~~GY~~~~~  404 (563)
T PLN02860        390 TRGPHVMLGYWGQNS  404 (563)
T ss_pred             EecCcccccccCCcc
Confidence            999999999999875

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=3e-51  Score=405.85  Aligned_cols=357  Identities=28%  Similarity=0.422  Sum_probs=305.5

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhcc-CCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~-gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      .++.+.|.+.+.++    |+++|+++.  ++++||+||.+++.++|+.|.+ . |+++|++|+++++|+.+++++++||+
T Consensus        10 ~tl~~~l~~~a~~~----~~~~a~~~~--~~~~Ty~~l~~~v~~~a~~L~~-~~g~~~g~~V~i~~~~~~~~~~~~lA~~   82 (546)
T PRK08314         10 TSLFHNLEVSARRY----PDKTAIVFY--GRAISYRELLEEAERLAGYLQQ-ECGVRKGDRVLLYMQNSPQFVIAYYAIL   82 (546)
T ss_pred             CCHHHHHHHHHHHc----CCCcceeec--CceecHHHHHHHHHHHHHHHHH-hhCCCCCCEEEEECCCChHHHHHHHHHH
Confidence            78999999999888    999999987  7899999999999999999999 8 99999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCe-EEEeCCC----------------------
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDSP----------------------  169 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~-~~~~~~~----------------------  169 (409)
                      ++|++++|+++..+.+++.++++++++++++++......+...    ..+ ++.....                      
T Consensus        83 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (546)
T PRK08314         83 RANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLRHVIVAQYSDYLPAEPEIAVPAWLRAEPPLQ  162 (546)
T ss_pred             HcCcEEeecCcCcCHHHHHHHHHhCCCeEEEEccchhhhHHHHhhccCcceEEEecchhhcccccccCcccccccccccc
Confidence            9999999999999999999999999999999988766554422    111 1111100                      


Q ss_pred             --------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeC
Q 015325          170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM  241 (409)
Q Consensus       170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~  241 (409)
                              .+++......   ........++++++++|||||||.||+|.++|++++..+......+ .....|++++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~  238 (546)
T PRK08314        163 ALAPGGVVAWKEALAAGL---APPPHTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-NSTPESVVLAVL  238 (546)
T ss_pred             cccccccccHHHHhcccC---CCCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCceEEEEc
Confidence                    0111111000   1112234568999999999999999999999999999888877777 688999999999


Q ss_pred             chhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCC
Q 015325          242 PYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG  320 (409)
Q Consensus       242 p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~  320 (409)
                      |++|.+|+ ..++.++..|+++++.+.+++..++..++++++|++.++|+++..++........++++||.+++||++++
T Consensus       239 p~~~~~g~~~~~~~~l~~G~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~  318 (546)
T PRK08314        239 PLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMP  318 (546)
T ss_pred             CchHHHHHHHHHHHHHHcCCeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCC
Confidence            99999998 77889999999999999999999999999999999999999999998876555667789999999999999


Q ss_pred             HHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccc
Q 015325          321 KDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM  400 (409)
Q Consensus       321 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~  400 (409)
                      +++.++|.+.| +.++++.||+||++.....  ........+++|+|++|++++|+|++++++++.|+.|||+|+|++++
T Consensus       319 ~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~--~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~  395 (546)
T PRK08314        319 EAVAERLKELT-GLDYVEGYGLTETMAQTHS--NPPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVF  395 (546)
T ss_pred             HHHHHHHHHHc-CCcEEecccccccccceec--CCCcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchh
Confidence            99999999999 8999999999999876544  22223345789999999999999988999999999999999999999


Q ss_pred             cccCCCCC
Q 015325          401 KGIFLPHF  408 (409)
Q Consensus       401 ~gY~~~~~  408 (409)
                      .||++++.
T Consensus       396 ~gY~~~~~  403 (546)
T PRK08314        396 KGYWNRPE  403 (546)
T ss_pred             ccccCChh
Confidence            99999763

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=7.2e-53  Score=403.80  Aligned_cols=352  Identities=30%  Similarity=0.444  Sum_probs=284.0

Q ss_pred             hhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEcc
Q 015325           45 SSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISP  124 (409)
Q Consensus        45 ~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~  124 (409)
                      .++++++    ||++|+++ ..++++||+||+++++++|..|++ +|+++|++|+++++|+.+++++++||+++|++++|
T Consensus         2 ~~~a~~~----pd~~a~~~-~~~~~~Ty~~l~~~v~~la~~L~~-~g~~~~~~V~i~~~n~~~~~~~~~A~~~~G~~~v~   75 (417)
T PF00501_consen    2 ERQAQRY----PDRIALID-DEGRSLTYKQLYERVRKLAAALRK-LGVKKGDRVAILLPNSIEFVVAFLACLRAGAIPVP   75 (417)
T ss_dssp             HHHHHHS----TTSEEEEE-TTTEEEEHHHHHHHHHHHHHHHHH-TTSSTTSEEEEEESSSHHHHHHHHHHHHTT-EEEE
T ss_pred             hhHHhhC----CCceEEEE-CCCEEEEHHHHHHHHHHHhhHHHH-hCCCccccccccCCccceeeeeecccccccccccc
Confidence            4566667    99999999 338999999999999999999998 99999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHhhcCCeEEEE----cCchHHHHhh----c--CCeEEEeCCCcchh---hhcccCCcccccccc-cC
Q 015325          125 ANPVNTESEISRQIQLSNPVIAFA----TSSVVHKLAK----L--KHRTILIDSPEFDS---MTMSWNSKHELDRAK-VC  190 (409)
Q Consensus       125 l~~~~~~~~l~~~l~~~~~~~ii~----~~~~~~~~~~----~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~  190 (409)
                      ++|.++.+++.+++++++++++|+    +......+..    .  ...+..++...+..   +......  ...... ..
T Consensus        76 l~~~~~~~~~~~~l~~~~~~~ii~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  153 (417)
T PF00501_consen   76 LDPSLSEDELRHILRQSGPKVIITSEAVDSEPLKKLKSIFKQEDPSSSIIILDRDDLPKKEALKSASLS--DEPQSPEDS  153 (417)
T ss_dssp             EETTSSHHHHHHHHHHHTESEEEECHHHSCHHHHHHHHHHTTSTTTEEEEEESHSSCTTCHHHHHHHHC--HCSHSTTHT
T ss_pred             cccccccccccccccccceeEEEEeccccccccccchhhhccccccccccccccccccccccccccccc--cccccCCCC
Confidence            999999999999999999999997    2222221211    1  11244444322211   1111000  000000 05


Q ss_pred             CCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhh--ccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecC
Q 015325          191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF--ASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR  267 (409)
Q Consensus       191 ~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~--~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~  267 (409)
                      ++++++++|||||||.||+|.++|++++..+..+.  ... ..+  |++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus       154 ~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~-~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~  230 (417)
T PF00501_consen  154 PDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYF-GLG--DRILSFLPLSHIFGLISALLAALFSGATLVLPSP  230 (417)
T ss_dssp             TTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTT-TTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEEEEESS
T ss_pred             ccceeEeecccccccccccccccccccccccccccccccc-ccC--ceEEeecccccccccccccccccccccccccccc
Confidence            68999999999999999999999999998877754  222 223  699999999999999 999999999999999987


Q ss_pred             CC---HHHHHHHHHHhcceeEeechHHHHHHHhCCCC----CCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceeccc
Q 015325          268 FD---LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST----DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY  340 (409)
Q Consensus       268 ~~---~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~----~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  340 (409)
                      ..   ++.+++.++++++|++.++|+++..+++....    ...++++||.++++|+++++++.+++++.++.+++++.|
T Consensus       231 ~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~Y  310 (417)
T PF00501_consen  231 FDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLY  310 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEE
T ss_pred             ccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccccccceecc
Confidence            54   47789999999999999999999999984322    235788899999999999999999999999556999999


Q ss_pred             CcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCC
Q 015325          341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       341 G~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~  407 (409)
                      |+||++..++...........+++|+|+|+++++|+|+++++++++|+.|||+|+||+++.||+++|
T Consensus       311 G~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~  377 (417)
T PF00501_consen  311 GSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDP  377 (417)
T ss_dssp             EEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBH
T ss_pred             cccccceeeecccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccc
Confidence            9999999887533234445678899999999999999777999999999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=4.8e-51  Score=404.05  Aligned_cols=363  Identities=22%  Similarity=0.325  Sum_probs=303.6

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCC----CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF  113 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~  113 (409)
                      .++.+.|.+.++.+    |+++|+++...    .+.+||.||.++++++|++|++ .|+++|++|+++++|++++++++|
T Consensus        24 ~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~Val~~~n~~e~~~~~l   98 (547)
T PRK13295         24 RTINDDLDACVASC----PDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLAR-LGVGRGDVVSCQLPNWWEFTVLYL   98 (547)
T ss_pred             CCHHHHHHHHHHHC----CCceEEEecCCCccccceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCChHHHHHHH
Confidence            78999999999988    99999998631    1789999999999999999999 999999999999999999999999


Q ss_pred             HHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH-----HHHhh----c-CC-eEEEeCC---CcchhhhcccC
Q 015325          114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLAK----L-KH-RTILIDS---PEFDSMTMSWN  179 (409)
Q Consensus       114 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~----~-~~-~~~~~~~---~~~~~~~~~~~  179 (409)
                      |++++|++++|+++..+.+++.++++.++++++++++...     ..+.+    . .. .++.++.   ..+.++.....
T Consensus        99 a~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (547)
T PRK13295         99 ACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPELPALRHVVVVGGDGADSFEALLITPA  178 (547)
T ss_pred             HHHhcCcEEeccccccCHHHHHHHHHhcCceEEEEeccccCcchHHHHHHHhhhCCCcceEEEecCCCccCHHHHhhCCc
Confidence            9999999999999999999999999999999999987531     11111    1 11 2223322   12333322110


Q ss_pred             --C---c-ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHH
Q 015325          180 --S---K-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFC  252 (409)
Q Consensus       180 --~---~-~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~  252 (409)
                        .   . .........++++++++|||||||.||+|+++|+++...+......+ .+.+.+++++..|++|.+++ ..+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~g~~~~~  257 (547)
T PRK13295        179 WEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHTANTLMANIVPYAERL-GLGADDVILMASPMAHQTGFMYGL  257 (547)
T ss_pred             cccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEeccHHHHHHHHHHHHHh-CCCCCCeEEEecCchhhhhHHHHH
Confidence              0   0 01111234568899999999999999999999999998888777777 68889999999999999987 778


Q ss_pred             HHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCC
Q 015325          253 FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP  332 (409)
Q Consensus       253 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~  332 (409)
                      +.++..|+++++.+.+++..+++.++++++|.+.++|+++..+..........+++||.+++||+++++++.+++++.+ 
T Consensus       258 ~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-  336 (547)
T PRK13295        258 MMPVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAAL-  336 (547)
T ss_pred             HHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHh-
Confidence            9999999999999988999999999999999999999999999987665566788999999999999999999999999 


Q ss_pred             CCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       333 ~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ++++++.||+||++...+............++|+|+++++++|+| +++++++.|+.|||+|+|++++.||+++|.
T Consensus       337 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~  411 (547)
T PRK13295        337 GAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVD-ADGAPLPAGQIGRLQVRGCSNFGGYLKRPQ  411 (547)
T ss_pred             CCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEEC-CCCCCCCCCCCCeEEEEcCcccccccCCcc
Confidence            999999999999987655432222223356899999999999999 789999999999999999999999999864

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=5.6e-52  Score=398.09  Aligned_cols=350  Identities=27%  Similarity=0.333  Sum_probs=280.0

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCC--CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVT--GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL  115 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~--~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~  115 (409)
                      .++...+.++++.+    |+.+|+.....  -+.+||+|+.+++.++|++|++ .|+.+||+|+|++.|+++|+++.+||
T Consensus        16 ~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~ty~e~~~~v~~~a~gL~~-lg~~~gdrvai~a~nr~eW~i~d~a~   90 (613)
T COG1022          16 HTLPKRLAERVKDR----PDGVALMYKELGGWEAITYRELYERVRALASGLLS-LGIPAGDRVAIFAANRPEWAIADLAI   90 (613)
T ss_pred             ccHHHHHHHHhhcC----CcceeEeeecCCcceEeeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            67889999999999    88889986533  3789999999999999999999 99988999999999999999999999


Q ss_pred             HHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHh-hcCC---eEEEe----C---------CCcchhhhccc
Q 015325          116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA-KLKH---RTILI----D---------SPEFDSMTMSW  178 (409)
Q Consensus       116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~-~~~~---~~~~~----~---------~~~~~~~~~~~  178 (409)
                      +.+|++.||+.+....+++.++|++++++++|++........ ....   .+..+    +         ...++......
T Consensus        91 ~~~g~v~Vp~y~t~~~~~~~~iL~~se~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (613)
T COG1022          91 LALGAVSVPIYSTSTPEQLAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPDEG  170 (613)
T ss_pred             HHcCCeEEecCCCCCHHHHHHHHhcCCceEEEecchHHHHHHHhhhccccchhhhhhhhhhhhhccchhhcccccccccc
Confidence            999999999999999999999999999999999985433322 1110   00000    0         00011100000


Q ss_pred             -------CCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHH
Q 015325          179 -------NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF  251 (409)
Q Consensus       179 -------~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~  251 (409)
                             .........+..++|+|.|+|||||||.||||++||+|+++++..+....+...++|+.++.+|+.|++....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~~~~~~d~~LsfLPlaHi~Er~~  250 (613)
T COG1022         171 ISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLPPIGPGDRVLSFLPLAHIFERAF  250 (613)
T ss_pred             chhhhhcccccccccCCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCCCCCCCcEEEEeCcHHHHHHHHH
Confidence                   0000111235678999999999999999999999999999999999998833889999999999999999854


Q ss_pred             -HHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--------CC--------------------
Q 015325          252 -CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--------TD--------------------  302 (409)
Q Consensus       252 -~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--------~~--------------------  302 (409)
                       ....+..|  .......++..++..+.+++||.++++|.+++.+-+...        .+                    
T Consensus       251 ~~~~~~~~g--~~~~~~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~  328 (613)
T COG1022         251 EGGLALYGG--VTVLFKEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALL  328 (613)
T ss_pred             HHHHHhhcc--eEEEecCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhc
Confidence             33333333  333334589999999999999999999998875543211        00                    


Q ss_pred             -------------------CCCC-CCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCC
Q 015325          303 -------------------GYDL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWG  362 (409)
Q Consensus       303 -------------------~~~l-~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~  362 (409)
                                         ...+ .++|++++||+++++++...|+..  |+++.++||+||+++.++.  +.+.....+
T Consensus       329 ~~~~~~~~~~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l--Gi~i~eGYGlTEts~~~~v--~~~~~~~~g  404 (613)
T COG1022         329 GGGPLSWLLVADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL--GIPILEGYGLTETSAVVSV--NPPDRFVLG  404 (613)
T ss_pred             ccCCcchhhhhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc--CCCeEEEecccccccceEE--ccccCcccC
Confidence                               0001 379999999999999999999998  8999999999999988877  566778899


Q ss_pred             ccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCCC
Q 015325          363 STGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHFE  409 (409)
Q Consensus       363 s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~~  409 (409)
                      ++|+|+|+++++|+| +          |||+||||.||+|||++|++
T Consensus       405 tvG~p~p~~evKI~d-~----------GEilVRG~~Vm~GYyk~pe~  440 (613)
T COG1022         405 TVGKPLPGIEVKIAD-D----------GEILVRGPNVMKGYYKNPEA  440 (613)
T ss_pred             CcCCcCCCceEEEcc-C----------ceEEEecchhcchhcCChHH
Confidence            999999999999999 4          99999999999999999964

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=1.3e-50  Score=400.90  Aligned_cols=367  Identities=33%  Similarity=0.519  Sum_probs=304.8

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      ..|+.+.+.+.+..+    |+++|+++..+++.+||.||.+++.++|+.|++ .|+++|++|+++++|+++++++++||+
T Consensus        27 ~~~~~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~V~i~~~~~~~~~~~~lA~~  101 (546)
T PLN02330         27 KLTLPDFVLQDAELY----ADKVAFVEAVTGKAVTYGEVVRDTRRFAKALRS-LGLRKGQVVVVVLPNVAEYGIVALGIM  101 (546)
T ss_pred             CCcHHHHHhhhhhcC----CCccEEEecCCCCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHHHH
Confidence            488999999999988    999999976456899999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCC------CcchhhhcccCCcc-ccccccc
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDS------PEFDSMTMSWNSKH-ELDRAKV  189 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~  189 (409)
                      ++|++++|+++..+.+++.+++++++++++++++.....+......++.++.      ..|.++........ .......
T Consensus       102 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (546)
T PLN02330        102 AAGGVFSGANPTALESEIKKQAEAAGAKLIVTNDTNYGKVKGLGLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNEEI  181 (546)
T ss_pred             HhCcEeccCCccCCHHHHHHHHHhcCCeEEEEccchhhhHhhcCCcEEEecCCCCCCcccHHHHHhhccccCcccccccC
Confidence            9999999999999999999999999999999999887777665555554432      23444443321110 1112234


Q ss_pred             CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC-CCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecC
Q 015325          190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR  267 (409)
Q Consensus       190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~  267 (409)
                      .++++++++|||||||.||+|.++|+++...+....... ......++.+...|++|.+++ ..++.++..|+++++.+.
T Consensus       182 ~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~  261 (546)
T PLN02330        182 LQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVTLGLIPFFHIYGITGICCATLRNKGKVVVMSR  261 (546)
T ss_pred             CcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhccCccccCceEEEEecChHHHHHHHHHHHHHhhcCCEEEEecc
Confidence            568899999999999999999999999887654322222 122345689999999999998 567889999999999999


Q ss_pred             CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCC--CcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccc
Q 015325          268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS--SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES  345 (409)
Q Consensus       268 ~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~--~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  345 (409)
                      +++..+++.++++++|.+.++|+++..+++.......++.  ++|.+++||+++++++.++|.+.|+++++++.||+||+
T Consensus       262 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~  341 (546)
T PLN02330        262 FELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEH  341 (546)
T ss_pred             cCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEeccccccc
Confidence            9999999999999999999999999999987554444444  47999999999999999999999999999999999999


Q ss_pred             cceecccCCCC---CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          346 TAGVFRTVGPD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       346 ~~~~~~~~~~~---~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +..........   ......++|.|+++++++|+|+++++++++|+.|||+++|++++.||++++.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~  407 (546)
T PLN02330        342 SCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKE  407 (546)
T ss_pred             ccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCcc
Confidence            76543321111   1234568999999999999998899999999999999999999999999874

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=7.5e-51  Score=408.24  Aligned_cols=366  Identities=17%  Similarity=0.216  Sum_probs=291.1

Q ss_pred             CCCCCHHHHHh-hccCCCCCCCCCCcEEEeCC----CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchH
Q 015325           35 DAPISAVDYVS-SLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP  109 (409)
Q Consensus        35 ~~~~~~~~~l~-~~~~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~  109 (409)
                      +..+|+...+. +.+..+    |+++|+++..    ..+++||+||.++++++|++|++ .|+++||+|+++++|+++++
T Consensus        48 ~~~~n~~~~~l~~~~~~~----p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~n~~e~v  122 (628)
T TIGR02316        48 GGRTNLCHNALDRHLDER----GEQLALVTVSSETGQERTLTYRQLHREVNVFASALRA-LGVGRGDRVLIYMPMIAEAV  122 (628)
T ss_pred             CCEeeHHHHHHHHHhCcC----CCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHH
Confidence            55588876544 445556    9999999731    24689999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH---------HHH----hh---cCCeEEEeCCC----
Q 015325          110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKL----AK---LKHRTILIDSP----  169 (409)
Q Consensus       110 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~----~~---~~~~~~~~~~~----  169 (409)
                      ++++||+++|++++|+++.++.+++.+++++++++++|+++...         ..+    ..   ....++..+..    
T Consensus       123 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~  202 (628)
T TIGR02316       123 FAMLACARIGAIHSVVFGGFASHSLALRIDDATPKLIVSADAGMRGGKVIPYKPLLDAAIAEAQHPPPHVLLVDRGLAPM  202 (628)
T ss_pred             HHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECCccccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc
Confidence            99999999999999999999999999999999999999976421         111    11   11223333311    


Q ss_pred             --------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHH-HHhhccCCCCCCCCEEEEe
Q 015325          170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV-ASSFASSPKRVSPAVMLFT  240 (409)
Q Consensus       170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~-~~~~~~~~~~~~~d~~l~~  240 (409)
                              .+.++...... .........++++++|+|||||||.||||+++|++++... ......+ +++++|++++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~  280 (628)
T TIGR02316       203 RLIPGRDVDYAALRTQHED-AQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVGGYAVALALSMWAIF-GIRAGQVMFSA  280 (628)
T ss_pred             CcccCccccHHHHhhcccc-CCCCceecCCCCcEEEEECCCCCCCCceEEECCcHHHHHHHHHHHHhc-CCCCCcEEEEc
Confidence                    12222111100 0111122456899999999999999999999999976443 3344445 67889999999


Q ss_pred             CchhhHHhH-HHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceee
Q 015325          241 MPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVA  313 (409)
Q Consensus       241 ~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~  313 (409)
                      .|++|..+. ..++.++..|+++++.++    +++..+++.|+++++|++.++|++++.|.+...  ....++++||.++
T Consensus       281 ~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~  360 (628)
T TIGR02316       281 SDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVRTMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLF  360 (628)
T ss_pred             CCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEE
Confidence            999999887 678999999999999863    578999999999999999999999999987643  2345689999999


Q ss_pred             ecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC--CCCCCCCCccccccCCceEEEecCCCCCCCCCCCcce
Q 015325          314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG--PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE  391 (409)
Q Consensus       314 ~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~--~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Ge  391 (409)
                      +||+++++++.+++++.+ +..+++.||+||++..++....  .......+++|+|++|++++|+|+++|++++.|+.||
T Consensus       361 ~gGe~l~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Ge  439 (628)
T TIGR02316       361 LAGEPLDEPTAHWITDGL-GKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGV  439 (628)
T ss_pred             EecCCCCHHHHHHHHHHh-CCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEE
Confidence            999999999999999988 7899999999999854433211  1123456889999999999999965899999999999


Q ss_pred             EEEecC---ccccccCCCCC
Q 015325          392 LSIRGP---TIMKGIFLPHF  408 (409)
Q Consensus       392 i~v~g~---~v~~gY~~~~~  408 (409)
                      |+++||   +.+.|||+++.
T Consensus       440 l~v~gp~~~g~~~~~~~~~~  459 (628)
T TIGR02316       440 LTVVPPLPPGCLSTVWGDDA  459 (628)
T ss_pred             EEEecCCCccccccccCChH
Confidence            999998   57899998763

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.2e-50  Score=407.22  Aligned_cols=365  Identities=19%  Similarity=0.224  Sum_probs=293.6

Q ss_pred             CCCCCHHHHHhhc-cCCCCCCCCCCcEEEeCCC----CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchH
Q 015325           35 DAPISAVDYVSSL-RATLPWRDDDTVALINSVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP  109 (409)
Q Consensus        35 ~~~~~~~~~l~~~-~~~~~~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~  109 (409)
                      +..+|+...+.++ ++.+    |+++|+++..+    .+++||+||.+++.++|+.|++ +|+++||+|+++++|+++++
T Consensus        53 ~~~~n~~~~~l~~~~~~~----p~~~Al~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~  127 (625)
T TIGR02188        53 GGELNVSYNCVDRHLEAR----PDKVAIIWEGDEPGEVRKITYRELHREVCRFANVLKS-LGVKKGDRVAIYMPMIPEAA  127 (625)
T ss_pred             CCEEEHHHHHHHHhhccC----CCCeEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHH
Confidence            4557887766654 4445    99999987522    3589999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH---------HH----HhhcC--Ce-EEEeCCC----
Q 015325          110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HK----LAKLK--HR-TILIDSP----  169 (409)
Q Consensus       110 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~----~~~~~--~~-~~~~~~~----  169 (409)
                      ++++||+++|++++++++.++.+++.+++++++++++|+++...         ..    +....  .+ ++..+..    
T Consensus       128 ~~~lA~~~~Gav~v~i~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (625)
T TIGR02188       128 IAMLACARIGAIHSVVFGGFSAEALADRINDAGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPV  207 (625)
T ss_pred             HHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHHhCCCCccEEEEEcCCCCCc
Confidence            99999999999999999999999999999999999999986532         11    11111  11 2222210    


Q ss_pred             --------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHh-hccCCCCCCCCEEEEe
Q 015325          170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLFT  240 (409)
Q Consensus       170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~-~~~~~~~~~~d~~l~~  240 (409)
                              .++++......  ........++++++|+|||||||.||||+++|++++...... ...+ .+.++|++++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-~~~~~d~~~~~  284 (625)
T TIGR02188       208 PWVEGRDVWWHDLMAKASA--YCEPEPMDSEDPLFILYTSGSTGKPKGVLHTTGGYLLYAAMTMKYVF-DIKDGDIFWCT  284 (625)
T ss_pred             CccccccccHHHHHhhcCC--CCCceecCCCCceEEEecCCCCCCCCeEEECccHhHHHHHHHHHhcc-CCCCCcEEEEC
Confidence                    12222221110  112234567899999999999999999999999987554433 3344 67889999999


Q ss_pred             CchhhHHhH-HHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCC--CCCCCCCcceee
Q 015325          241 MPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVA  313 (409)
Q Consensus       241 ~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~l~~Lr~v~  313 (409)
                      .|++|..+. +.++.++..|+++++.+.    +++..+++.|+++++|++.++|+++..|.+....  ...++++||.++
T Consensus       285 ~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~  364 (625)
T TIGR02188       285 ADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVKKHDLSSLRLLG  364 (625)
T ss_pred             CCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccccCCccceeEEE
Confidence            999999887 678999999999999853    4799999999999999999999999999886532  345688999999


Q ss_pred             ecCCCCCHHHHHHHHHhCC--CCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCC-CCCcc
Q 015325          314 CGAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLP-PGKEG  390 (409)
Q Consensus       314 ~~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~-~g~~G  390 (409)
                      ++|+++++++++++.+.++  ++++++.||+||+++.++.........+++++|+|++|++++|+| ++|++++ +|+.|
T Consensus       365 ~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~g~~~~~~g~~G  443 (625)
T TIGR02188       365 SVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVD-EEGNPVEGPGEGG  443 (625)
T ss_pred             EecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEEC-CCCCCCCCCCCeE
Confidence            9999999999999999884  478999999999987655422212234678899999999999999 8999999 99999


Q ss_pred             eEEEec--CccccccCCCCC
Q 015325          391 ELSIRG--PTIMKGIFLPHF  408 (409)
Q Consensus       391 ei~v~g--~~v~~gY~~~~~  408 (409)
                      ||+|+|  |+++.|||++++
T Consensus       444 eL~v~~p~p~~~~gy~~~~~  463 (625)
T TIGR02188       444 YLVIKQPWPGMLRTIYGDHE  463 (625)
T ss_pred             EEEEccCCCcccccccCChH
Confidence            999999  689999999874

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.6e-51  Score=411.58  Aligned_cols=372  Identities=19%  Similarity=0.216  Sum_probs=288.2

Q ss_pred             CCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCC----CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCC
Q 015325           30 DLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNS  105 (409)
Q Consensus        30 ~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~  105 (409)
                      .|.+ +..+|+...+.++..+. ..+|+++|+++...    .+++||+||.++++++|+.|++ +|+++||+|+++++|+
T Consensus        51 ~wf~-~~~~n~~~~~l~~~~~~-~~~~~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GDrV~i~~~n~  127 (647)
T PTZ00237         51 DWFK-GGELNTCYNVLDIHVKN-PLKRDQDALIYECPYLKKTIKLTYYQLYEKVCEFSRVLLN-LNISKNDNVLIYMANT  127 (647)
T ss_pred             hhCC-CCeeeHHHHHHHHhhcc-cCCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCC
Confidence            3443 56689988777665421 00289999987421    3589999999999999999999 9999999999999999


Q ss_pred             CchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCc---------hHHHHh---hc---C-CeEEEeC-C
Q 015325          106 IEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS---------VVHKLA---KL---K-HRTILID-S  168 (409)
Q Consensus       106 ~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~---------~~~~~~---~~---~-~~~~~~~-~  168 (409)
                      +++++++|||+++|++++|+++.++.+++.+++++++++++|+++.         ..+.+.   ..   . ..++... .
T Consensus       128 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~  207 (647)
T PTZ00237        128 LEPLIAMLSCARIGATHCVLFDGYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRN  207 (647)
T ss_pred             HHHHHHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCCEEEEcccceeCCceechHHHHHHHHhcccCCCCEEEEEEcC
Confidence            9999999999999999999999999999999999999999999752         111111   10   1 1222211 0


Q ss_pred             --------------------Ccchhhhccc---CCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHH-HHHHHHh
Q 015325          169 --------------------PEFDSMTMSW---NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL-TAAVASS  224 (409)
Q Consensus       169 --------------------~~~~~~~~~~---~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l-~~~~~~~  224 (409)
                                          ..|++++...   ............++++++|+|||||||.||||+++|++. .......
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~  287 (647)
T PTZ00237        208 DITSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYW  287 (647)
T ss_pred             CcccccccccccccCCCcccccHHHHHhhhccccCCCCCCceeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHH
Confidence                                0122222110   000011123346789999999999999999999999984 4333322


Q ss_pred             hccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC--CC----HHHHHHHHHHhcceeEeechHHHHHHHhC
Q 015325          225 FASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR--FD----LKMMLKAVEEFRVTHAAVTPPIVVAMSKG  298 (409)
Q Consensus       225 ~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~----~~~~~~~i~~~~~t~l~~~p~~l~~l~~~  298 (409)
                      .... .....+++++..|++|+.+...++.++..|+++++.++  +.    +..+++.|+++++|++.++|++++.|.+.
T Consensus       288 ~~~~-~~~~~d~~~~~~~~~w~~~~~~~~~~l~~G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~  366 (647)
T PTZ00237        288 RSII-EKDIPTVVFSHSSIGWVSFHGFLYGSLSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKT  366 (647)
T ss_pred             HHhc-CCCCCcEEEEcCCCceEeeHHHHHHHHhCCcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhh
Confidence            3333 46678999999999998766678999999999999864  12    68899999999999999999999999875


Q ss_pred             CC-----CCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceE
Q 015325          299 GS-----TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEA  373 (409)
Q Consensus       299 ~~-----~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v  373 (409)
                      ..     ....++++||.+++||+++++++.+++++.+ ++++++.||+||+++.++.. ........+++|+|+||+++
T Consensus       367 ~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~-g~~i~~~yG~TE~~~~~~~~-~~~~~~~~~s~G~p~~g~~~  444 (647)
T PTZ00237        367 DPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYIENKL-KIKSSRGYGQTEIGITYLYC-YGHINIPYNATGVPSIFIKP  444 (647)
T ss_pred             CccccccccccCcchheEEEecCccCCHHHHHHHHHhc-CCCEEeeechHHhChhhhcc-CCCCCCCCCCCccCcCCceE
Confidence            32     2345688999999999999999999999998 89999999999998654431 12222334789999999999


Q ss_pred             EEecCCCCCCCCCCCcceEEEecC---ccccccCCCCC
Q 015325          374 KIVDPETGDSLPPGKEGELSIRGP---TIMKGIFLPHF  408 (409)
Q Consensus       374 ~i~d~~~g~~~~~g~~Gei~v~g~---~v~~gY~~~~~  408 (409)
                      +|+| ++|++++.|+.|||+++||   +++.|||+++.
T Consensus       445 ~i~d-~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~  481 (647)
T PTZ00237        445 SILS-EDGKELNVNEIGEVAFKLPMPPSFATTFYKNDE  481 (647)
T ss_pred             EEEC-CCCCCCCCCCceEEEEeccCCchhhCceeCCHH
Confidence            9999 7999999999999999986   78999999863

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=9.1e-51  Score=407.41  Aligned_cols=367  Identities=25%  Similarity=0.309  Sum_probs=296.6

Q ss_pred             CCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeC------CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCC
Q 015325           31 LPPEDAPISAVDYVSSLRATLPWRDDDTVALINS------VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTN  104 (409)
Q Consensus        31 ~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~------~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~  104 (409)
                      +...+-+.++.++|.+.++++    |+++|+++.      ...+++||+||.+++.++|+.|++ .|+++||+|+++++|
T Consensus        18 ~~~~~~~~t~~~~l~~~a~~~----p~~~Al~~~~~~~~~~~~~~~Ty~eL~~~v~~~A~~L~~-~Gi~~gd~V~i~~~n   92 (632)
T PRK07529         18 LAARDLPASTYELLSRAAARH----PDAPALSFLLDADPLDRPETWTYAELLADVTRTANLLHS-LGVGPGDVVAFLLPN   92 (632)
T ss_pred             chhhcCCCCHHHHHHHHHHHC----CCCceEEeecccCCCCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCC
Confidence            333344579999999999998    999999863      125789999999999999999999 999999999999999


Q ss_pred             CCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH-----HHHh----hc-CCe-EEEeCCC----
Q 015325          105 SIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLA----KL-KHR-TILIDSP----  169 (409)
Q Consensus       105 ~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~----~~-~~~-~~~~~~~----  169 (409)
                      ++++++++|||+++| +++|+++.++.+++.++++.++++++|++....     ..+.    .. ..+ ++..+..    
T Consensus        93 ~~e~~~~~lA~~~~G-i~~pi~~~~~~~~i~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  171 (632)
T PRK07529         93 LPETHFALWGGEAAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVEVDLARYLP  171 (632)
T ss_pred             CHHHHHHHHHHHHhC-EEEeCCCcCCHHHHHHHHHhcCCcEEEEeCCCCCchHHHHHHHHHhcCCcceeEEEecCccccc
Confidence            999999999999999 569999999999999999999999999975431     1111    11 111 2222211    


Q ss_pred             -------------------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCC
Q 015325          170 -------------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK  230 (409)
Q Consensus       170 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~  230 (409)
                                         ++.+.+...............++++++++|||||||.||+|.+||++++.........+ .
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TSGTTG~PK~v~~sh~~l~~~~~~~~~~~-~  250 (632)
T PRK07529        172 GPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPKLAQHTHGNEVANAWLGALLL-G  250 (632)
T ss_pred             ccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECCCccCcCCEEEEcHHHHHHHHHHHHHhc-C
Confidence                               12222222111101111234568999999999999999999999999998877777666 5


Q ss_pred             CCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecC--C-C---HHHHHHHHHHhcceeEeechHHHHHHHhCCCCCC
Q 015325          231 RVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR--F-D---LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG  303 (409)
Q Consensus       231 ~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~--~-~---~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~  303 (409)
                      ..++|++++..|++|.++. ..++.++..|+++++.+.  + +   ...+++.++++++|++.++|+++..|++.+.. .
T Consensus       251 ~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~  329 (632)
T PRK07529        251 LGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVD-G  329 (632)
T ss_pred             CCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcchHHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-C
Confidence            7899999999999999988 678999999999999853  2 2   36889999999999999999999999987532 3


Q ss_pred             CCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEe--cCCCC
Q 015325          304 YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIV--DPETG  381 (409)
Q Consensus       304 ~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~--d~~~g  381 (409)
                      .++++||.+++||+++++++.++|++.+ ++++++.||+||+++.++.. ........+++|+|+|+++++|+  | ++|
T Consensus       330 ~~~~slr~v~~gg~~l~~~l~~~~~~~~-g~~l~~~YG~TE~~~~~~~~-~~~~~~~~~svG~~~p~~~v~i~~~d-~~g  406 (632)
T PRK07529        330 HDISSLRYALCGAAPLPVEVFRRFEAAT-GVRIVEGYGLTEATCVSSVN-PPDGERRIGSVGLRLPYQRVRVVILD-DAG  406 (632)
T ss_pred             CCccceEEEEEcCCCCCHHHHHHHHHHh-CCcEeeeecccccCcccccC-CccccccCCCcccccCCceEEEEEcC-CCC
Confidence            4678999999999999999999999998 89999999999998765542 22233467899999999999985  5 566


Q ss_pred             ---CCCCCCCcceEEEecCccccccCCCCC
Q 015325          382 ---DSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       382 ---~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                         +++++|+.|||+|+||+++.||++++.
T Consensus       407 ~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~  436 (632)
T PRK07529        407 RYLRDCAVDEVGVLCIAGPNVFSGYLEAAH  436 (632)
T ss_pred             cccccCCCCCceEEEEECCCccccccCCcc
Confidence               889999999999999999999998763

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=7.7e-51  Score=410.74  Aligned_cols=362  Identities=23%  Similarity=0.252  Sum_probs=283.2

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeC----------CCC-----------ceeeHHHHHHHHHHHHHHhHhccCCCCCC
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINS----------VTG-----------LRVSFSEFTRRTNSLASYLQNVTRLSKND   96 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~----------~~~-----------~~~Ty~el~~~~~~la~~L~~~~gv~~g~   96 (409)
                      .|+.++|.+.++.+    ||++|+...          .++           ..+||+|+.++++++|++|.+ +|+++||
T Consensus        58 ~t~~~l~~~~~~~~----pd~~al~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-lG~~~gd  132 (696)
T PLN02387         58 TTLAALFEQSCKKY----SDKRLLGTRKLISREFETSSDGRKFEKLHLGEYEWITYGQVFERVCNFASGLVA-LGHNKEE  132 (696)
T ss_pred             CCHHHHHHHHHHHC----CCCceEEEecccccccccccCCcccccccCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCC
Confidence            68999999999999    999999421          012           238999999999999999999 9999999


Q ss_pred             EEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CC-eEEEeCCCc
Q 015325           97 TAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSPE  170 (409)
Q Consensus        97 ~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~~  170 (409)
                      +|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+...     .. .++.++...
T Consensus       133 ~Vai~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~li~~~~~~~~l~~~~~~~~~l~~ii~~~~~~  212 (696)
T PLN02387        133 RVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDSKQLKKLIDISSQLETVKRVIYMDDEG  212 (696)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCeEEEecCCCCHHHHHHHHHccCCCEEEECHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            999999999999999999999999999999999999999999999999999987766554432     11 233333211


Q ss_pred             -----------------chhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCC
Q 015325          171 -----------------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS  233 (409)
Q Consensus       171 -----------------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~  233 (409)
                                       +.++...+... ........++|+++|+|||||||.||||++||++++..+.........+.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dd~a~I~yTSGTTG~PKGV~lth~~l~~~~~~~~~~~~~~~~  291 (696)
T PLN02387        213 VDSDSSLSGSSNWTVSSFSEVEKLGKEN-PVDPDLPSPNDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGK  291 (696)
T ss_pred             chhhhhhhccCCcEEEEHHHHHHhhccC-CCCCCCCCccceEEEEecCCCCCCCCEEEEEcHHHHHHHHHHHhhcCCCCC
Confidence                             22222211111 111223457899999999999999999999999999888776655435788


Q ss_pred             CCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCC--------HHHHHHHHHHhcceeEeechHHHHHHHhCCCCC---
Q 015325          234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFD--------LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD---  302 (409)
Q Consensus       234 ~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~--------~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~---  302 (409)
                      +|++++.+|++|.+++...+.++..|+++.+.....        +..++..++++++|++.++|.+++.+.+....+   
T Consensus       292 ~d~~l~~lPl~Hi~~~~~~~~~~~~g~~i~~g~~~~l~~~~~~~~~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~  371 (696)
T PLN02387        292 NDVYLAYLPLAHILELAAESVMAAVGAAIGYGSPLTLTDTSNKIKKGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDA  371 (696)
T ss_pred             CCEEEEECcHHHHHHHHHHHHHHHhCCEEEECChhhhcccccccccCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhc
Confidence            999999999999999966666778888877653311        234567899999999999999999886531100   


Q ss_pred             ------------------------------CC-------------CC-CCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325          303 ------------------------------GY-------------DL-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQ  338 (409)
Q Consensus       303 ------------------------------~~-------------~l-~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  338 (409)
                                                    ..             .+ ++||.+++||+++++++.+.++..+ ++.+++
T Consensus       372 ~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~i~~GGapl~~~~~~~~~~~~-g~~v~~  450 (696)
T PLN02387        372 KGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLGGRIRFMLSGGAPLSGDTQRFINICL-GAPIGQ  450 (696)
T ss_pred             ccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhCCcEEEEEEcCCCCCHHHHHHHHHHc-CCCeeE
Confidence                                          00             01 5899999999999999988888788 899999


Q ss_pred             ccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCC-CC--CCCCcceEEEecCccccccCCCCC
Q 015325          339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGD-SL--PPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~-~~--~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .||+||+++.++...  ......+++|+|+|+++++|+|++++. .+  .++..|||+|+||++|.|||++|+
T Consensus       451 ~YG~TEt~~~~~~~~--~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~~p~GEi~vrGp~v~~GY~~~pe  521 (696)
T PLN02387        451 GYGLTETCAGATFSE--WDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQE  521 (696)
T ss_pred             eechhhcccceeecC--cccCCCCccCCCCCceEEEEeeccccCcccCCCCCCCceEEeccCcccchhcCCHH
Confidence            999999987665522  233456899999999999999954443 22  345579999999999999999875

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.7e-50  Score=393.50  Aligned_cols=351  Identities=17%  Similarity=0.238  Sum_probs=297.4

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      |++.+.|.+.+.++    |+++|++++  +.++||.||.++++++|+.|.+ .|. +|++|+|+++|+.++++++|||++
T Consensus         1 ~~~~~~~~~~a~~~----p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~~~-~~~~v~i~~~~~~~~~~~~la~~~   72 (487)
T PRK07638          1 MGITKEYKKHASLQ----PNKIAIKEN--DRVLTYKDWFESVCKVANWLNE-KES-KNKTIAILLENRIEFLQLFAGAAM   72 (487)
T ss_pred             CChHHHHHHHHHhC----CCCeEEecC--CcEeeHHHHHHHHHHHHHHHHH-hCC-CCCEEEEEcCCCHHHHHHHHHHHH
Confidence            56888899998888    999999987  7899999999999999999999 884 799999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI  197 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  197 (409)
                      +|++++|+++.++.+++.++++.+++++++++......+......++..+  .+.........  .........+++++|
T Consensus        73 ~G~~~v~l~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~a~i  148 (487)
T PRK07638         73 AGWTCVPLDIKWKQDELKERLAISNADMIVTERYKLNDLPDEEGRVIEID--EWKRMIEKYLP--TYAPIENVQNAPFYM  148 (487)
T ss_pred             cCeEEEecCccCCHHHHHHHHHhCCCCEEEEecccccchhhccceEEEeh--hhhhhhhhccc--cccccccCCCCcEEE
Confidence            99999999999999999999999999999999865554443233333222  22222221110  111112234678999


Q ss_pred             EcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHH
Q 015325          198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV  277 (409)
Q Consensus       198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i  277 (409)
                      +|||||||.||+|+++|++++..+......+ ...++|+++...|++|..++..++.++..|+++++.+.+++..++..+
T Consensus       149 ~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~i  227 (487)
T PRK07638        149 GFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-HMKREDSVLIAGTLVHSLFLYGAISTLYVGQTVHLMRKFIPNQVLDKL  227 (487)
T ss_pred             EeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CcCCCCEEEEeecchHHHHHHHHHHHHccCcEEEEcCCCCHHHHHHHH
Confidence            9999999999999999999988888777766 688999999999999998888889999999999999999999999999


Q ss_pred             HHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCC
Q 015325          278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE  357 (409)
Q Consensus       278 ~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~  357 (409)
                      +++++|++.++|+++..|.+...   . ..+.+.++++|++++.++.+++.+.||++++++.||+||++..+... ....
T Consensus       228 ~~~~~t~~~~~P~~~~~l~~~~~---~-~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~-~~~~  302 (487)
T PRK07638        228 ETENISVMYTVPTMLESLYKENR---V-IENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALV-DEES  302 (487)
T ss_pred             HHcCCeEEEeCcHHHHHHHhCcC---c-CCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEec-cccc
Confidence            99999999999999999998732   1 34566678899999999999999999999999999999998765542 2233


Q ss_pred             CCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCC
Q 015325          358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       358 ~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~  407 (409)
                      .....++|+|+++++++|+| ++|+++++|+.|||+++|+.++.|||+++
T Consensus       303 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~Gel~v~~~~~~~gy~~~~  351 (487)
T PRK07638        303 ERRPNSVGRPFHNVQVRICN-EAGEEVQKGEIGTVYVKSPQFFMGYIIGG  351 (487)
T ss_pred             CCCCCCCCcccCCcEEEEEC-CCCCCCCCCCCeEEEEecccceeeecCCH
Confidence            44567899999999999999 88999999999999999999999999886

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-50  Score=404.30  Aligned_cols=365  Identities=19%  Similarity=0.242  Sum_probs=291.4

Q ss_pred             CCCCCHHHHHh-hccCCCCCCCCCCcEEEeCC----CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchH
Q 015325           35 DAPISAVDYVS-SLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP  109 (409)
Q Consensus        35 ~~~~~~~~~l~-~~~~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~  109 (409)
                      +..+|+...+. +.++++    |+++|+++..    +.+++||+||.++++++|+.|++ .|+++||+|+++++|+++++
T Consensus        63 ~~~~n~~~~~l~~~~~~~----p~~~Al~~~~~~~~~~~~lTy~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~  137 (637)
T PRK00174         63 DGELNVSYNCLDRHLKTR----GDKVAIIWEGDDPGDSRKITYRELHREVCRFANALKS-LGVKKGDRVAIYMPMIPEAA  137 (637)
T ss_pred             CCEeEHHHHHHHHhhccC----CCCeEEEEECCCCCceEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHH
Confidence            55577766544 445556    9999999742    23589999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH---------HHHh----hc-CCe-EEEeCCC-----
Q 015325          110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKLA----KL-KHR-TILIDSP-----  169 (409)
Q Consensus       110 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~----~~-~~~-~~~~~~~-----  169 (409)
                      ++++||+++|++++++++.++.+++.+++++++++++|+++...         ..+.    .. ..+ ++..+..     
T Consensus       138 ~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (637)
T PRK00174        138 VAMLACARIGAVHSVVFGGFSAEALADRIIDAGAKLVITADEGVRGGKPIPLKANVDEALANCPSVEKVIVVRRTGGDVD  217 (637)
T ss_pred             HHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCCcEEEEcCccccCCcccchHHHHHHHHHhCCCccEEEEEcCCCCCcC
Confidence            99999999999999999999999999999999999999976532         1111    11 111 2222210     


Q ss_pred             -------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHH-hhccCCCCCCCCEEEEeC
Q 015325          170 -------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPKRVSPAVMLFTM  241 (409)
Q Consensus       170 -------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~d~~l~~~  241 (409)
                             .++++......  ........++++++|+|||||||.||||+++|++++..... ....+ ...++|++++..
T Consensus       218 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~~-~~~~~d~~~~~~  294 (637)
T PRK00174        218 WVEGRDLWWHELVAGASD--ECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAAMTMKYVF-DYKDGDVYWCTA  294 (637)
T ss_pred             cCCCCcccHHHHHhhcCC--CCCccccCCCCcEEEEECCCCCCCCceEEeCcchhHHHHHHHHHhcc-CCCCCcEEEEcC
Confidence                   12222221110  11222345688999999999999999999999998755443 33334 577889999999


Q ss_pred             chhhHHhH-HHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCC--CCCCCCCcceeee
Q 015325          242 PYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVAC  314 (409)
Q Consensus       242 p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~l~~Lr~v~~  314 (409)
                      |++|..+. +.++.++..|+++++.+.    +++..+++.|+++++|++.++|++++.|.+....  ...++++||.+++
T Consensus       295 ~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~  374 (637)
T PRK00174        295 DVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIFYTAPTAIRALMKEGDEHPKKYDLSSLRLLGS  374 (637)
T ss_pred             CchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEEeecHHHHHHHHhcCCcccccCCccceeEEEE
Confidence            99999887 678999999999999753    4799999999999999999999999999886432  3446789999999


Q ss_pred             cCCCCCHHHHHHHHHhCC--CCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceE
Q 015325          315 GAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL  392 (409)
Q Consensus       315 ~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei  392 (409)
                      +|+++++++.+++.+.++  ++++++.||+||+++.++..........++++|+|++|++++|+| ++|++++.|+.|||
T Consensus       375 ~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d-~~g~~~~~g~~Gel  453 (637)
T PRK00174        375 VGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVD-EEGNPLEGGEGGNL  453 (637)
T ss_pred             eCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEEC-CCCCCCCCCCcEEE
Confidence            999999999999999884  378999999999987654322111233567899999999999999 89999999999999


Q ss_pred             EEec--CccccccCCCCC
Q 015325          393 SIRG--PTIMKGIFLPHF  408 (409)
Q Consensus       393 ~v~g--~~v~~gY~~~~~  408 (409)
                      +|+|  |+++.|||++++
T Consensus       454 ~v~g~~p~~~~gy~~~~~  471 (637)
T PRK00174        454 VIKDPWPGMMRTIYGDHE  471 (637)
T ss_pred             EEcCCCCcccccccCCHH
Confidence            9999  699999999873

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-50  Score=397.10  Aligned_cols=352  Identities=19%  Similarity=0.232  Sum_probs=296.9

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|.+.++++    ||++|++++  ++++||+||.++++++|++|.+ .|+++|++|+++++|+++++++++||++
T Consensus        43 ~~~~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~A~~L~~-~g~~~g~~V~i~~~n~~~~~~~~lA~~~  115 (537)
T PRK13382         43 MGPTSGFAIAAQRC----PDRPGLIDE--LGTLTWRELDERSDALAAALQA-LPIGEPRVVGIMCRNHRGFVEALLAANR  115 (537)
T ss_pred             CCHHHHHHHHHHhC----CCCeEEEeC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEecCcHHHHHHHHHHHH
Confidence            68999999999999    999999987  7799999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc------CCeEEEeCCC----cchhhhcccCCccccccc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSP----EFDSMTMSWNSKHELDRA  187 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  187 (409)
                      +|++++|+++.++.+++.+++++++++++|++.+....+...      ....+.....    .++.+.....    ....
T Consensus       116 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  191 (537)
T PRK13382        116 IGADILLLNTSFAGPALAEVVTREGVDTVIYDEEFSATVDRALADCPQATRIVAWTDEDHDLTVEVLIAAHA----GQRP  191 (537)
T ss_pred             cCcEEEecCcccCHHHHHHHHHhcCCCEEEEchhhHHHHHHHHhhccccceEEEecCCcccccHHHHhhccC----cCCC
Confidence            999999999999999999999999999999987765444321      1111222111    1222221111    0011


Q ss_pred             ccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC
Q 015325          188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR  267 (409)
Q Consensus       188 ~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~  267 (409)
                      ...+++.++++|||||||.||||+++|++++.........+ .....++++...|++|.+++..++.++..|+++++...
T Consensus       192 ~~~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~g~~~~~~~l~~g~~~~~~~~  270 (537)
T PRK13382        192 EPTGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-PWRAEEPTVIVAPMFHAWGFSQLVLAASLACTIVTRRR  270 (537)
T ss_pred             CCCCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-CCCCCCeEEEecChHhhhHHHHHHHHHhcCcEEEECCC
Confidence            23457889999999999999999999998887777766666 57788999999999999999888999999999999988


Q ss_pred             CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccc
Q 015325          268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES  345 (409)
Q Consensus       268 ~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  345 (409)
                      +++..+++.|+++++|++.++|+++..|++...  ....++++||.+++||++++++++++|.+.+ +..+++.||+||+
T Consensus       271 ~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~i~~~YG~TE~  349 (537)
T PRK13382        271 FDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQF-GDVIYNNYNATEA  349 (537)
T ss_pred             cCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeccccccc
Confidence            999999999999999999999999999987643  2234467899999999999999999999999 7789999999999


Q ss_pred             cceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccC
Q 015325          346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF  404 (409)
Q Consensus       346 ~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~  404 (409)
                      +..++... ......++++|+|+++++++|+| +++++++.|+.|||+++|++++.||+
T Consensus       350 ~~~~~~~~-~~~~~~~~~vG~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~  406 (537)
T PRK13382        350 GMIATATP-ADLRAAPDTAGRPAEGTEIRILD-QDFREVPTGEVGTIFVRNDTQFDGYT  406 (537)
T ss_pred             CcceecCh-hHhccCCCCccccCcCcEEEEEC-CCCCCCCCCCeeEEEEEcCCcccCcc
Confidence            87655322 12234567899999999999999 78999999999999999999999998

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-50  Score=411.00  Aligned_cols=350  Identities=19%  Similarity=0.211  Sum_probs=290.7

Q ss_pred             CCHHHHHhhccCC--CCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHH
Q 015325           38 ISAVDYVSSLRAT--LPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL  115 (409)
Q Consensus        38 ~~~~~~l~~~~~~--~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~  115 (409)
                      -|+.++|.+.+..  +    ||++|++++   ..+||+||.++++++|+.|.+ .|+++|++|+++++|+++++++++||
T Consensus         4 ~~~~~~~~~~a~~~~~----pd~~a~~~~---~~~Ty~eL~~~~~~lA~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la~   75 (705)
T PRK06060          4 GNLAGLLAEQASEAGW----YDRPAFYAA---DVVTHGQIHDGAARLGEVLRN-RGLSSGDRVLLCLPDSPDLVQLLLAC   75 (705)
T ss_pred             cCHHHHHHHHHhhccC----CCceEEEec---CceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            3788888887765  5    899999874   479999999999999999999 99999999999999999999999999


Q ss_pred             HHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEE
Q 015325          116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA  195 (409)
Q Consensus       116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  195 (409)
                      +++|++++|++|.++.+++.+++++++++++|++.+....+...  .+.  .   ....................+++++
T Consensus        76 ~~aG~~~vpi~p~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~--~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~a  148 (705)
T PRK06060         76 LARGVMAFLANPELHRDDHALAARNTEPALVVTSDALRDRFQPS--RVA--E---AAELMSEAARVAPGGYEPMGGDALA  148 (705)
T ss_pred             HHhCcEEEecCCCCCHHHHHHHHhcCCCcEEEEchHHhhhhccc--ccc--h---hhhhhhhccccCCCCCCCCCCCCeE
Confidence            99999999999999999999999999999999987655433211  111  0   1111111100001111234568899


Q ss_pred             EEEcCCCCCCCcchhhhccHHHHHHHHHhh-ccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEec-CCCHHH
Q 015325          196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSF-ASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKM  272 (409)
Q Consensus       196 ~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~-~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~-~~~~~~  272 (409)
                      +++|||||||.||||+++|+++...+.... ..+ .+...|++++..|++|.+++ ..++.++..|+++++.+ .+++..
T Consensus       149 ~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~  227 (705)
T PRK06060        149 YATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-RLTPEDTGLCSARMYFAYGLGNSVWFPLATGGSAVINSAPVTPEA  227 (705)
T ss_pred             EEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-CCCCcceeEEeccchhhcchhHHHHHHHhcCCEEEEeCCCCCHHH
Confidence            999999999999999999999988776554 334 57888999999999999887 67888999999999986 478899


Q ss_pred             HHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325          273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT  352 (409)
Q Consensus       273 ~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~  352 (409)
                      +...++++++|+++++|+++..+.+...  ...+++||.+++||+++++++.++|.+.|+++++++.||+||++..+...
T Consensus       228 ~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~  305 (705)
T PRK06060        228 AAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSN  305 (705)
T ss_pred             HHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEec
Confidence            9999999999999999999999987643  23568999999999999999999999999889999999999997654431


Q ss_pred             CCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       353 ~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                        .......+++|+|+++++++|+| ++|+++++|+.|||+|+|++++.||||+++
T Consensus       306 --~~~~~~~~~iG~p~~~~~v~i~d-~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~  358 (705)
T PRK06060        306 --RVDEWRLGTLGRVLPPYEIRVVA-PDGTTAGPGVEGDLWVRGPAIAKGYWNRPD  358 (705)
T ss_pred             --cCCCCCcCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEccchhhhhhhCCCc
Confidence              12233467899999999999999 789999999999999999999999999875

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.2e-50  Score=394.06  Aligned_cols=354  Identities=24%  Similarity=0.338  Sum_probs=300.9

Q ss_pred             CHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHh
Q 015325           39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL  118 (409)
Q Consensus        39 ~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~  118 (409)
                      .+.+.|.+.++.+    ||++|++++  ++.+||.||.++++++|+.|++..|+++|++|+++++|+++++++++||+++
T Consensus         3 ~~~~~~~~~a~~~----p~~~a~~~~--~~~~ty~~l~~~~~~la~~L~~~~g~~~~~~V~i~~~~~~~~~~~~la~~~~   76 (496)
T PRK06839          3 GIAYWIEKRAYLH----PDRIAIITE--EEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKV   76 (496)
T ss_pred             cHHHHHHHHHHHC----CCCeEEEEC--CceEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHhc
Confidence            5778889999888    999999987  8999999999999999999975379999999999999999999999999999


Q ss_pred             CCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC-----CeEEEeCCCcchhhhcccCCcccccccccCCCC
Q 015325          119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSD  193 (409)
Q Consensus       119 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      |++++|+++..+.+++..+++.+++++++++++....+.+..     ..++.+.  ++.+.....    ........+++
T Consensus        77 G~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~  150 (496)
T PRK06839         77 ECIAVPLNIRLTENELIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISIT--SLKEIEDRK----IDNFVEKNESA  150 (496)
T ss_pred             CcEEEecCcccCHHHHHHHHHhcCceEEEEcHHHHHHHHHhhhccCcceEEEec--chHhhhccC----CCCCCCCCCCC
Confidence            999999999999999999999999999999987665544321     1222222  222222211    11122345688


Q ss_pred             EEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHH
Q 015325          194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKM  272 (409)
Q Consensus       194 ~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~  272 (409)
                      +++++|||||||.||+|.++|.++..........+ ....+|++++..|++|.+++ ..++.++..|+++++.+.+++..
T Consensus       151 ~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~  229 (496)
T PRK06839        151 SFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-DLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGGVIIVPRKFEPTK  229 (496)
T ss_pred             cEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-CCCCCCeEEEeeCCcchhhHHHHHHHHHhcCcEEEEccCCCHHH
Confidence            99999999999999999999999877666555556 57889999999999999998 56788999999999998899999


Q ss_pred             HHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325          273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT  352 (409)
Q Consensus       273 ~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~  352 (409)
                      +++.++++++|.+.++|+++..+.........+++++|.+++||+++++++.+.|++.  ++++++.||+||++..++..
T Consensus       230 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~  307 (496)
T PRK06839        230 ALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR--GFLFGQGFGMTETSPTVFML  307 (496)
T ss_pred             HHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh--CCeeEeeccCCCCCcceEec
Confidence            9999999999999999999999998876666678899999999999999999999986  89999999999998755443


Q ss_pred             CCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       353 ~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .........+++|+|+++++++|+| ++++.++.|+.|||+|+|++++.|||+++.
T Consensus       308 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~  362 (496)
T PRK06839        308 SEEDARRKVGSIGKPVLFCDYELID-ENKNKVEVGEVGELLIRGPNVMKEYWNRPD  362 (496)
T ss_pred             ccccccccCCCCcccCCCceEEEEC-CCcCCCCCCCceEEEEECCCcchhhcCChH
Confidence            3323335568899999999999999 778889999999999999999999998864

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.4e-50  Score=394.09  Aligned_cols=359  Identities=25%  Similarity=0.343  Sum_probs=306.7

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|.+.+..+    |+++|++++  ++++||+||.+++.++|+.|++ .|+++||+|+++++|+.+++++++||++
T Consensus         5 ~~i~~~l~~~~~~~----~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gv~~g~~V~l~~~~~~~~~~~~la~~~   77 (513)
T PRK07656          5 MTLPELLARAARRF----GDKEAYVFG--DQRLTYAELNARVRRAAAALAA-LGIGKGDRVAIWAPNSPHWVIAALGALK   77 (513)
T ss_pred             ccHHHHHHHHHHHC----CCCeEEEeC--CCceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence            67999999999888    999999998  8899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CCe-EEEeCC----------CcchhhhcccCCc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDS----------PEFDSMTMSWNSK  181 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~----------~~~~~~~~~~~~~  181 (409)
                      +|++++++++..+.+++.+++++++++++++++.........     ... ++....          ..|.++...... 
T Consensus        78 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  156 (513)
T PRK07656         78 AGAVVVPLNTRYTADEAAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDP-  156 (513)
T ss_pred             cCeEEEecCcccCHHHHHHHHhhcCceEEEEchhhHHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCC-
Confidence            999999999999999999999999999999988765544321     111 111111          122333222111 


Q ss_pred             ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCC
Q 015325          182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALME  260 (409)
Q Consensus       182 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~  260 (409)
                       ........++++++++|||||||.||+|.++|+++...+......+ ...+.+++++..|++|.+++ ..++.++..|+
T Consensus       157 -~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~  234 (513)
T PRK07656        157 -AERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYL-GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGA  234 (513)
T ss_pred             -CCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhh-CCCCCCeEEEccchHHHHHHHHHHHHHHHcCc
Confidence             1122345678899999999999999999999999998887777777 68899999999999999998 66899999999


Q ss_pred             eEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCC-ceecc
Q 015325          261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKV-VLVQA  339 (409)
Q Consensus       261 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~-~i~~~  339 (409)
                      ++++.+.+++..+++.|+++++|++.++|+++..+.+........+++||.+++||+++++++.++|++.+ +. .+++.
T Consensus       235 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~~  313 (513)
T PRK07656        235 TILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESEL-GVDIVLTG  313 (513)
T ss_pred             eEEecCcCCHHHHHHHHHHhCCeEEechHHHHHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHc-CCCceEeE
Confidence            99998888999999999999999999999999999998776666789999999999999999999999999 66 89999


Q ss_pred             cCcccccceecccCCCCC-CCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          340 YGLTESTAGVFRTVGPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       340 yG~tE~~~~~~~~~~~~~-~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ||+||++++++....... ....+++|.|+++++++|+| +++++++.|+.|||+++|++++.||++++.
T Consensus       314 YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~  382 (513)
T PRK07656        314 YGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVN-ELGEEVPVGEVGELLVRGPNVMKGYYDDPE  382 (513)
T ss_pred             EccccCCCceeecCccccccccCCCccccCCCcEEEEEC-CCCCCCCCCCceEEEEEcchhhhhhcCCHH
Confidence            999999876665322111 12267899999999999999 789999999999999999999999998753

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-49  Score=390.04  Aligned_cols=359  Identities=25%  Similarity=0.334  Sum_probs=302.9

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      +|+.+.+...++.+    |+++|++++  ++.+||.||.+++.++|.+|.+ .|+++|++|+++++|+.+++++++||++
T Consensus         2 ~~~~~~~~~~~~~~----~~~~a~~~~--~~~~ty~el~~~v~~~a~~L~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~   74 (497)
T PRK06145          2 FNLSASIAFHARRT----PDRAALVYR--DQEISYAEFHQRILQAAGMLHA-RGIGQGDVVALLMKNSAAFLELAFAASY   74 (497)
T ss_pred             ccHHHHHHHHHHHC----CCceEEEEC--CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            67889999999888    999999998  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCc---chhhhcccCCcccccccccCCCCE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPE---FDSMTMSWNSKHELDRAKVCQSDV  194 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  194 (409)
                      +|++++|+++..+.+++.++++.+++++++++.+....... ....+.++...   +..+..... . ........++++
T Consensus        75 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~  151 (497)
T PRK06145         75 LGAVFLPINYRLAADEVAYILGDAGAKLLLVDEEFDAIVAL-ETPKIVIDAAAQADSRRLAQGGL-E-IPPQAAVAPTDL  151 (497)
T ss_pred             cCcEEEecccccCHHHHHHHHHhcCCcEEEEccchhhhhhc-ccceEEecCcccchhHHHhccCC-C-CCCCCCCCccce
Confidence            99999999999999999999999999999998766543321 11222222111   111111000 0 111123456899


Q ss_pred             EEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHH
Q 015325          195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMM  273 (409)
Q Consensus       195 a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~  273 (409)
                      ++++|||||||.||+|.+||+++..........+ +...+++++...|++|.+++ ...+.++..|+++++.+.+++..+
T Consensus       152 a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~  230 (497)
T PRK06145        152 VRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-GLTASERLLVVGPLYHVGAFDLPGIAVLWVGGTLRIHREFDPEAV  230 (497)
T ss_pred             EEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-CCCCCcEEEEecCchhHhHHHHHHHHHHhccCEEEECCcCCHHHH
Confidence            9999999999999999999999987666555556 68899999999999999988 566888999999999998999999


Q ss_pred             HHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccC
Q 015325          274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV  353 (409)
Q Consensus       274 ~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~  353 (409)
                      ++.++++++|.+.++|+++..++.........+++||.+++||+++++++.++|++.|++.++++.||+||+++..+...
T Consensus       231 ~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~  310 (497)
T PRK06145        231 LAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLME  310 (497)
T ss_pred             HHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceecc
Confidence            99999999999999999999999876655667789999999999999999999999998899999999999987555433


Q ss_pred             CCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       354 ~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ........+++|+|+++++++++| ++++++++|+.|||+++|++++.|||+++.
T Consensus       311 ~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~  364 (497)
T PRK06145        311 AGREIEKIGSTGRALAHVEIRIAD-GAGRWLPPNMKGEICMRGPKVTKGYWKDPE  364 (497)
T ss_pred             CccccccCCCcccCCCCceEEEEC-CCCCCCCCCCceEEEEECcchhhhhcCChH
Confidence            222334567899999999999999 789999999999999999999999998763

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.3e-49  Score=388.40  Aligned_cols=350  Identities=23%  Similarity=0.283  Sum_probs=298.1

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      +|+.++|.+.+..+    ||++|+++.  ++.+||+||.++++++|+.|.+ .|+++|++|+++++|+.+++++++|+++
T Consensus         2 ~~~~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~   74 (483)
T PRK03640          2 ETMPNWLKQRAFLT----PDRTAIEFE--EKKVTFMELHEAVVSVAGKLAA-LGVKKGDRVALLMKNGMEMILVIHALQQ   74 (483)
T ss_pred             CcHHHHHHHHHHhC----CCceEEEeC--CeeeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            68999999999999    999999988  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI  197 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  197 (409)
                      +|++++++++..+.+++..++++++++++++++..........       ...++++....... ........+++++++
T Consensus        75 ~G~~~v~i~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~a~i  146 (483)
T PRK03640         75 LGAVAVLLNTRLSREELLWQLDDAEVKCLITDDDFEAKLIPGI-------SVKFAELMNGPKEE-AEIQEEFDLDEVATI  146 (483)
T ss_pred             CCcEEEecCcCCCHHHHHHHHHhCCCCEEEEcchhhHHHhhhc-------cccHHHHhhccccc-CCCCCCCCCCCeEEE
Confidence            9999999999999999999999999999999876554433211       01133322221111 112223456899999


Q ss_pred             EcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHH
Q 015325          198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV  277 (409)
Q Consensus       198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i  277 (409)
                      +|||||||.||+|.+||+++...+......+ +.+++|++++.+|++|.+++..++.++..|+++++.+..++..+++.+
T Consensus       147 ~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i  225 (483)
T PRK03640        147 MYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-GLTEDDCWLAAVPIFHISGLSILMRSVIYGMRVVLVEKFDAEKINKLL  225 (483)
T ss_pred             EeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-CCCcCcEEEEecCHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHH
Confidence            9999999999999999999988776666666 688999999999999999997789999999999999999999999999


Q ss_pred             HHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCC
Q 015325          278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE  357 (409)
Q Consensus       278 ~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~  357 (409)
                      +++++|++.++|+++..|....... ....+||.+++||+++++.+++.+++.  ++++++.||+||++..++.......
T Consensus       226 ~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~  302 (483)
T PRK03640        226 QTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK--GIPVYQSYGMTETASQIVTLSPEDA  302 (483)
T ss_pred             HHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh--CCCeeeeeccCcccccccccCcccc
Confidence            9999999999999999998764332 234689999999999999999998874  8999999999998765444333333


Q ss_pred             CCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       358 ~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ....+++|+|+++++++|+| + +++++.|+.|||+++||+++.||++++.
T Consensus       303 ~~~~~~vG~p~~~~~~~i~~-~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~  351 (483)
T PRK03640        303 LTKLGSAGKPLFPCELKIEK-D-GVVVPPFEEGEIVVKGPNVTKGYLNRED  351 (483)
T ss_pred             cccCCCcccccCCcEEEEec-C-CCcCCCCCceEEEEECcchhhhhcCCHH
Confidence            45678999999999999998 4 4899999999999999999999998863

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-49  Score=393.65  Aligned_cols=361  Identities=24%  Similarity=0.394  Sum_probs=293.4

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      ..|+.+.|...++++    |+++|++++  ++.+||+||.++++++|+.|.+..|+++||+|+++++|++++++++|||+
T Consensus        23 ~~~~~~~l~~~a~~~----p~~~al~~~--~~~~Ty~el~~~~~~la~~L~~~~gi~~gd~Vai~~~n~~~~~~~~la~~   96 (562)
T PRK05677         23 YPNIQAVLKQSCQRF----ADKPAFSNL--GKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAM   96 (562)
T ss_pred             cCcHHHHHHHHHHhC----CCCeeEEEC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            358999999999888    999999987  78999999999999999999862499999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhh----cCCeEEEeCC-Cc---------------------
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDS-PE---------------------  170 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~-~~---------------------  170 (409)
                      ++|++++|+++..+.+++.+++++++++++|++.+....+.+    ...+.+.... .+                     
T Consensus        97 ~~Ga~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
T PRK05677         97 RAGLIVVNTNPLYTAREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVKHVKKMV  176 (562)
T ss_pred             HcCeEEeecCCCCCHHHHHHHHhccCceEEEEecchhhhHHHhhhccCcceeEEecccccccchhhhhcccchhhccccc
Confidence            999999999999999999999999999999998765443321    1222221110 00                     


Q ss_pred             ----------chhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCC-CCC-CCCEEE
Q 015325          171 ----------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP-KRV-SPAVML  238 (409)
Q Consensus       171 ----------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~-~~d~~l  238 (409)
                                +.+........ ........++++++++|||||||.||+|+++|+++...+......+. ... ..++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~  255 (562)
T PRK05677        177 PAYHLPQAVKFNDALAKGAGQ-PVTEANPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSNLNEGCEILI  255 (562)
T ss_pred             cccCCcccccHHHHHhcCCCC-CCCCCCCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccCCCCCccEEE
Confidence                      01111111000 11122345689999999999999999999999999876655544331 122 457889


Q ss_pred             EeCchhhHHhH-HHHHHHHHhCCeEEEec-CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecC
Q 015325          239 FTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGA  316 (409)
Q Consensus       239 ~~~p~~~~~g~-~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G  316 (409)
                      +.+|++|.+++ ..++.++..|++.++.+ ..++..+++.|+++++|.+.++|+++..+..........+++||.+++||
T Consensus       256 ~~~pl~h~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG  335 (562)
T PRK05677        256 APLPLYHIYAFTFHCMAMMLIGNHNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGG  335 (562)
T ss_pred             EcCcHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcC
Confidence            99999999998 67788888898877765 46899999999999999999999999999886554455678999999999


Q ss_pred             CCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEec
Q 015325          317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG  396 (409)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g  396 (409)
                      +++++++.++|++.+ ++++++.||+||++..++..  ......++++|+|+++++++|+| +++++++.|+.|||+++|
T Consensus       336 ~~~~~~~~~~~~~~~-~~~v~~~YG~tE~~~~~~~~--~~~~~~~~~vG~~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g  411 (562)
T PRK05677        336 MALQLATAERWKEVT-GCAICEGYGMTETSPVVSVN--PSQAIQVGTIGIPVPSTLCKVID-DDGNELPLGEVGELCVKG  411 (562)
T ss_pred             ccCCHHHHHHHHHHc-CCCeeccCCccccCcceeec--CccCCCCCccCccCCCCEEEEEC-CCCCCCCCCCCeEEEEec
Confidence            999999999999988 89999999999998766542  22334567899999999999999 789999999999999999


Q ss_pred             CccccccCCCCC
Q 015325          397 PTIMKGIFLPHF  408 (409)
Q Consensus       397 ~~v~~gY~~~~~  408 (409)
                      +.++.|||+++.
T Consensus       412 ~~~~~gY~~~~~  423 (562)
T PRK05677        412 PQVMKGYWQRPE  423 (562)
T ss_pred             CccchhhcCCch
Confidence            999999999874

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=5.9e-50  Score=396.99  Aligned_cols=357  Identities=21%  Similarity=0.310  Sum_probs=287.5

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCC--------ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTG--------LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP  109 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~--------~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~  109 (409)
                      +|+.+.|.+.++++    |+++|+++.+.+        +++||+||.++++++|++|.+ .|+++||+|+++++|+++++
T Consensus         6 ~~~~~~l~~~a~~~----p~~~a~~~~~~~~~~~~~~~~~~Ty~~l~~~~~~~A~~L~~-~g~~~gd~V~~~~~n~~~~~   80 (552)
T PRK09274          6 ANIARHLPRAAQER----PDQLAVAVPGGRGADGKLAYDELSFAELDARSDAIAHGLNA-AGIGRGMRAVLMVTPSLEFF   80 (552)
T ss_pred             hhHHHHHHHHHHhC----CCcceEEeccCCCCccccccCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCcHHHH
Confidence            78899999999888    999999986322        289999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCc--hHHHHhhc---CC-eEEEeCC------Ccchhhhcc
Q 015325          110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS--VVHKLAKL---KH-RTILIDS------PEFDSMTMS  177 (409)
Q Consensus       110 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~--~~~~~~~~---~~-~~~~~~~------~~~~~~~~~  177 (409)
                      ++++||+++|++++|+++.++.+++.+++++++++++|++++  ....+...   .. .++.++.      ..+.++...
T Consensus        81 ~~~la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  160 (552)
T PRK09274         81 ALTFALFKAGAVPVLVDPGMGIKNLKQCLAEAQPDAFIGIPKAHLARRLFGWGKPSVRRLVTVGGRLLWGGTTLATLLRD  160 (552)
T ss_pred             HHHHHHHHcCeEEEEcCCCccHHHHHHHHHhcCCCEEEeccHHHHHHHHhccCccchhheeccccccccCCccHHHhccc
Confidence            999999999999999999999999999999999999998752  22222111   01 1222211      122222211


Q ss_pred             cCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHH
Q 015325          178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAA  257 (409)
Q Consensus       178 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~  257 (409)
                      .... ........++++++++|||||||.||+|.+||+++...+......+ ++.+.++.++..|++|.+++       .
T Consensus       161 ~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~pl~~~~~~-------~  231 (552)
T PRK09274        161 GAAA-PFPMADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-GIEPGEIDLPTFPLFALFGP-------A  231 (552)
T ss_pred             Cccc-cCCCCCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-CCCCCceeeeccCHHHhhhh-------h
Confidence            1100 1122334568999999999999999999999999998888777777 68889999999999876543       4


Q ss_pred             hCCeEEEec-------CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHh
Q 015325          258 LMETAVVMQ-------RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK  330 (409)
Q Consensus       258 ~G~~~v~~~-------~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~  330 (409)
                      .|+++++.+       .+++..+++.|+++++|+++++|+++..|.+.......++++||.+++||+++++++.++|++.
T Consensus       232 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~  311 (552)
T PRK09274        232 LGMTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAM  311 (552)
T ss_pred             hCCeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHH
Confidence            588887764       4689999999999999999999999999998765556678999999999999999999999999


Q ss_pred             CC-CCceecccCcccccceecccCCC------C--CCCCCCccccccCCceEEEecCC--------CCCCCCCCCcceEE
Q 015325          331 FP-KVVLVQAYGLTESTAGVFRTVGP------D--ECRRWGSTGRLSAGLEAKIVDPE--------TGDSLPPGKEGELS  393 (409)
Q Consensus       331 ~~-~~~i~~~yG~tE~~~~~~~~~~~------~--~~~~~~s~G~p~~~~~v~i~d~~--------~g~~~~~g~~Gei~  393 (409)
                      |+ ++++++.||+||+++.++.....      .  ......++|+|+|+++++|+|++        ++++++.|+.|||+
T Consensus       312 ~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~  391 (552)
T PRK09274        312 LPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIV  391 (552)
T ss_pred             cCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEE
Confidence            96 48999999999998655432111      0  11122478999999999999952        57889999999999


Q ss_pred             EecCccccccCCCCC
Q 015325          394 IRGPTIMKGIFLPHF  408 (409)
Q Consensus       394 v~g~~v~~gY~~~~~  408 (409)
                      |+|++++.|||++|.
T Consensus       392 v~g~~~~~GY~~~~~  406 (552)
T PRK09274        392 VAGPMVTRSYYNRPE  406 (552)
T ss_pred             EecCcccccccCChH
Confidence            999999999999863

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=1.3e-49  Score=398.30  Aligned_cols=356  Identities=21%  Similarity=0.246  Sum_probs=282.8

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCC---CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF  113 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~  113 (409)
                      +.++.+.|.+.+.++    |+++|+++.+   ..+++||+||.++++++|++|.+ .|+++||+|+++++|++++++++|
T Consensus        38 ~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~Gv~~gd~Vai~~~n~~e~~~~~l  112 (614)
T PRK08180         38 PRRLTDRLVHWAQEA----PDRVFLAERGADGGWRRLTYAEALERVRAIAQALLD-RGLSAERPLMILSGNSIEHALLAL  112 (614)
T ss_pred             CccHHHHHHHHHHHC----CCCceeeeccCCCceeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCHHHHHHHH
Confidence            378999999999988    9999998742   12689999999999999999999 999999999999999999999999


Q ss_pred             HHHHhCCeEccCCCCCC-----HHHHHHHHhhcCCeEEEEcCch--HHHHhh---cCCeEEEeCC-------Ccchhhhc
Q 015325          114 SLLSLGVIISPANPVNT-----ESEISRQIQLSNPVIAFATSSV--VHKLAK---LKHRTILIDS-------PEFDSMTM  176 (409)
Q Consensus       114 A~~~~G~~~v~l~~~~~-----~~~l~~~l~~~~~~~ii~~~~~--~~~~~~---~~~~~~~~~~-------~~~~~~~~  176 (409)
                      ||+++|++++|+++.++     .+++.+++++++++++|+++..  ...+..   ....++..+.       ..+.++..
T Consensus       113 A~~~~Gav~vpl~~~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  192 (614)
T PRK08180        113 AAMYAGVPYAPVSPAYSLVSQDFGKLRHVLELLTPGLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPFAALLA  192 (614)
T ss_pred             HHHHcCCeEeeeccccccccCCHHHHHHHHhcCCCcEEEEcCHHHHHHHHhhhccCCceEEEecCCCCCcccccHHHHhc
Confidence            99999999999999988     7999999999999999998642  222221   1223333221       12333332


Q ss_pred             ccCCcc-cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCC--CCCEEEEeCchhhHHhH-HHH
Q 015325          177 SWNSKH-ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV--SPAVMLFTMPYFHIYGL-FFC  252 (409)
Q Consensus       177 ~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~g~-~~~  252 (409)
                      ...... ........++++++|+|||||||.||||++||+++...+......+ ...  ..+++++.+|++|.+++ ..+
T Consensus       193 ~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~lPl~h~~g~~~~~  271 (614)
T PRK08180        193 TPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTF-PFLAEEPPVLVDWLPWNHTFGGNHNL  271 (614)
T ss_pred             cccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhc-cccCCCCcEEEEecchHHHhhHHHHH
Confidence            211000 0111234568999999999999999999999999998887766655 332  56899999999999998 677


Q ss_pred             HHHHHhCCeEEEecC-CCH---HHHHHHHHHhcceeEeechHHHHHHHhCCC----CCCCCCCCcceeeecCCCCCHHHH
Q 015325          253 FRAAALMETAVVMQR-FDL---KMMLKAVEEFRVTHAAVTPPIVVAMSKGGS----TDGYDLSSLETVACGAAPLGKDTI  324 (409)
Q Consensus       253 ~~~l~~G~~~v~~~~-~~~---~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~----~~~~~l~~Lr~v~~~G~~~~~~~~  324 (409)
                      +.++..|+++++.+. +++   ..+++.++++++|+++++|.++..|++...    .....+++||.+++||+++++++.
T Consensus       272 ~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~v~~gGa~l~~~~~  351 (614)
T PRK08180        272 GIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKLLFYAGAALSQDVW  351 (614)
T ss_pred             HHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeEEEEccCCCCHHHH
Confidence            889999999999763 443   467888999999999999999998886432    123346899999999999999999


Q ss_pred             HHHHHh----C-CCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCcc
Q 015325          325 MAFASK----F-PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI  399 (409)
Q Consensus       325 ~~~~~~----~-~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v  399 (409)
                      ++|++.    + .++++++.||+||++..++...  .....++++|+|++|++++|+| +       |..|||+|+|+++
T Consensus       352 ~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~--~~~~~~~svG~p~pg~~v~i~d-~-------~~~GEi~vrg~~v  421 (614)
T PRK08180        352 DRLDRVAEATCGERIRMMTGLGMTETAPSATFTT--GPLSRAGNIGLPAPGCEVKLVP-V-------GGKLEVRVKGPNV  421 (614)
T ss_pred             HHHHHHHHhhcCCCceeeeeecccccCCceEecc--cccCCCCcccCccCCcEEEEec-C-------CCCcEEEEecCcc
Confidence            999875    3 2478999999999986665422  2234678999999999999998 3       4469999999999


Q ss_pred             ccccCCCCC
Q 015325          400 MKGIFLPHF  408 (409)
Q Consensus       400 ~~gY~~~~~  408 (409)
                      +.|||++|.
T Consensus       422 ~~GY~~~p~  430 (614)
T PRK08180        422 TPGYWRAPE  430 (614)
T ss_pred             chhhcCChh
Confidence            999999864

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-49  Score=394.73  Aligned_cols=361  Identities=22%  Similarity=0.311  Sum_probs=296.5

Q ss_pred             CCCHHHHHhhcc-C-CCCCCCCCCcEEEeCC--CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHH
Q 015325           37 PISAVDYVSSLR-A-TLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY  112 (409)
Q Consensus        37 ~~~~~~~l~~~~-~-~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~  112 (409)
                      .+|+...+.++. . ..    |+++|+++.+  ..+++||+||.++++++|++|.+ .|+++||+|+++++|++++++++
T Consensus        41 ~~~~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~~~~~  115 (570)
T PRK04319         41 KVNIAYEAIDRHADGGR----KDKVALRYLDASRKEKYTYKELKELSNKFANVLKE-LGVEKGDRVFIFMPRIPELYFAL  115 (570)
T ss_pred             ceeHHHHHHHHhhccCC----CCceEEEEECCCCceeecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHH
Confidence            478886544443 3 34    8999998742  24689999999999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhh--c-CC-eEEEeCCC--------cchhhhcccCC
Q 015325          113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK--L-KH-RTILIDSP--------EFDSMTMSWNS  180 (409)
Q Consensus       113 ~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~--~-~~-~~~~~~~~--------~~~~~~~~~~~  180 (409)
                      +||+++|++++|+++.++.+++.++++++++++++++.........  . .. .++.++..        ++.++......
T Consensus       116 la~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (570)
T PRK04319        116 LGALKNGAIVGPLFEAFMEEAVRDRLEDSEAKVLITTPALLERKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASD  195 (570)
T ss_pred             HHHHHcCcEEcccccccCHHHHHHHHHccCCcEEEEChhhhhccchhcCCCceEEEEECCCcCCCcCccCHHHHHhhcCC
Confidence            9999999999999999999999999999999999998765443221  1 11 12222211        12222222111


Q ss_pred             cccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhC
Q 015325          181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALM  259 (409)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G  259 (409)
                        ........++++++++|||||||.||+|+++|++++.........+ .+.++|++++..|++|.++. ..++.++..|
T Consensus       196 --~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G  272 (570)
T PRK04319        196 --EFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-DLHEDDVYWCTADPGWVTGTSYGIFAPWLNG  272 (570)
T ss_pred             --cCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-CCCCCceEEecCChHHhhCchHHHHHHHhcC
Confidence              1122234568899999999999999999999999988877777766 68889999999999999887 7789999999


Q ss_pred             CeEEEec-CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCce
Q 015325          260 ETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL  336 (409)
Q Consensus       260 ~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i  336 (409)
                      +++++.. .+++..+++.|+++++|++.++|++++.|.+...  ....++++||.+++||+++++++.+++++.+ +.++
T Consensus       273 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~i  351 (570)
T PRK04319        273 ATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDDLVKKYDLSSLRHILSVGEPLNPEVVRWGMKVF-GLPI  351 (570)
T ss_pred             ceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCcccccCCcccceEEEEcccCCCHHHHHHHHHHh-CCCe
Confidence            9999875 5899999999999999999999999999987643  2345678999999999999999999999988 8999


Q ss_pred             ecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEec--CccccccCCCCC
Q 015325          337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG--PTIMKGIFLPHF  408 (409)
Q Consensus       337 ~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g--~~v~~gY~~~~~  408 (409)
                      ++.||+||+++.++.. .......++++|+|+||++++|+| ++|+++++|+.|||+++|  ++++.||||++.
T Consensus       352 ~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~  423 (570)
T PRK04319        352 HDNWWMTETGGIMIAN-YPAMDIKPGSMGKPLPGIEAAIVD-DQGNELPPNRMGNLAIKKGWPSMMRGIWNNPE  423 (570)
T ss_pred             EeceeecccCCEEEec-CCCCCCCCCcCcCCCCCCEEEEEC-CCCCCCCCCCceEEEEcCCCChHHhHhcCCHH
Confidence            9999999998765432 222234568999999999999999 889999999999999997  899999999864

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]

Probab=100.00  E-value=6.8e-50  Score=378.39  Aligned_cols=365  Identities=23%  Similarity=0.328  Sum_probs=298.9

Q ss_pred             CCCCCHHHHHhhccCCCCCCCCCCcEEEeCC----CC--ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCch
Q 015325           35 DAPISAVDYVSSLRATLPWRDDDTVALINSV----TG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI  108 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~----~~--~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~  108 (409)
                      +...|+.+.+...+..+    |+.+++-...    .+  +.+||.|.++++.+++..|++ +|+++++.|+|+..|++||
T Consensus        72 ~~~~T~~~~f~~~~~~~----~~~p~LG~r~~~~~~~~~~~~tY~q~~e~~~~~~~~l~~-lG~~~~~~VGIy~~N~pEW  146 (691)
T KOG1256|consen   72 DGPLTLYEGFRRSVEKS----GNGPMLGTRVIVDGKGPYEWLTYKQVYERAENLGSGLRK-LGVKEDSKVGIYAFNRPEW  146 (691)
T ss_pred             CCcccHHHHhhcchhcc----CCCCceeEEecccCCCCcEEEEHHHHHHHHHHHHHHHHH-hCCCCCceEEEeccCChhh
Confidence            56699999999999999    9999996542    12  689999999999999999998 9999999999999999999


Q ss_pred             HHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcC-chHHHHhhc-------CCe-EEEeCCC----------
Q 015325          109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS-SVVHKLAKL-------KHR-TILIDSP----------  169 (409)
Q Consensus       109 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~-~~~~~~~~~-------~~~-~~~~~~~----------  169 (409)
                      +++.+||...|++.|||...++++.+.+|++++...++|++. +....+.+.       .++ ++.++..          
T Consensus       147 iis~~a~~~~~~v~VplYdTlg~ea~~~Ii~~~e~~iv~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~  226 (691)
T KOG1256|consen  147 IISEMACYAYSLVNVPLYDTLGAEAVHYIINHAEISIVFVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAEN  226 (691)
T ss_pred             HHhHHHHHhcCCEEeecccCCCHHHHHHHHHhcceeEEEEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhc
Confidence            999999999999999999999999999999999999999994 444433321       122 2333322          


Q ss_pred             ------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHh---hccC--CCCCCCCEEE
Q 015325          170 ------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASS--PKRVSPAVML  238 (409)
Q Consensus       170 ------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~---~~~~--~~~~~~d~~l  238 (409)
                            +|+++.+.+............++|.+.|+|||||||.||||++||+|+++.+...   ....  ......|+.+
T Consensus       227 ~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTSGTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~~~~~~~dv~l  306 (691)
T KOG1256|consen  227 NGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTSGTTGNPKGVMLTHRNIVSDVAGIFFLSAAENAKATVGDDVYL  306 (691)
T ss_pred             CCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcCCCCCCCceEEEeccceeehhhhhhhhhhcccccccccCceEE
Confidence                  3677777665332222246788999999999999999999999999999865432   1111  1233479999


Q ss_pred             EeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCC----CC------------
Q 015325          239 FTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS----TD------------  302 (409)
Q Consensus       239 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~----~~------------  302 (409)
                      +.+|++|++....-...+..|+.+.+.++ |+..+...|+..+||.+.++|-+|+++-....    ..            
T Consensus       307 SyLPLAHi~er~~~~~~~~~G~~IgF~~g-D~~~l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~  385 (691)
T KOG1256|consen  307 SYLPLAHIFERVVELYTFYIGAKIGFARG-DILKLTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAM  385 (691)
T ss_pred             EeCcHHHHHHHHHHHhHhhcccEEEEecC-ChHHHHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            99999999999666667799999999985 89999999999999999999998876543211    00            


Q ss_pred             ----------CCC-----C--------------CCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccC
Q 015325          303 ----------GYD-----L--------------SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV  353 (409)
Q Consensus       303 ----------~~~-----l--------------~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~  353 (409)
                                ...     +              .++|.+++|++|+++++.+.++..+ +++|+++||+||+++.++...
T Consensus       386 ~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~vr~~~sGaAPls~ev~~F~r~~~-g~~v~eGYGlTEts~g~~~~~  464 (691)
T KOG1256|consen  386 AYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNVRLIISGAAPLSPEVLTFFRAAL-GCRVLEGYGLTETSAGTTLTL  464 (691)
T ss_pred             HHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCceeEEEecCCCCCHHHHHHHHHhc-CceeeecccccccCCceEecc
Confidence                      000     0              4789999999999999999999998 999999999999996555532


Q ss_pred             CCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       354 ~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .  .+...+++|.|+|+++++++|+++-+.-+.|..|||+|||++||+|||++|.
T Consensus       465 ~--~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~GEIcirG~~Vf~GYyK~p~  517 (691)
T KOG1256|consen  465 P--GDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKGEICVRGPNVFMGYYKDPE  517 (691)
T ss_pred             C--CCCCCCCcCCcccCceEEEechHHhCcCcCCCcceEEEecchhceeccCChH
Confidence            2  2337899999999999999998888888888999999999999999999986

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.8e-49  Score=389.36  Aligned_cols=360  Identities=24%  Similarity=0.340  Sum_probs=303.9

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      .+|+.+.+...+..+    |+++|+++.  ++.+||.||.++++++|++|.+ .|+++|++|+++++|+++++++++||+
T Consensus        16 ~~n~~~~~~~~a~~~----~~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~~a~~   88 (542)
T PRK07786         16 RQNWVNQLARHALMQ----PDAPALRFL--GNTTTWRELDDRVAALAGALSR-RGVGFGDRVLILMLNRTEFVESVLAAN   88 (542)
T ss_pred             ccCHHHHHHHHHHHC----CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            389999999999988    999999988  7899999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CCe-EEEeCC------CcchhhhcccCCcccc
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDS------PEFDSMTMSWNSKHEL  184 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~------~~~~~~~~~~~~~~~~  184 (409)
                      ++|++++|+++..+.+++.++++++++++++++......+...     ... ++..+.      ..++++......  ..
T Consensus        89 ~~G~~~vpl~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  166 (542)
T PRK07786         89 MLGAIAVPVNFRLTPPEIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLLAEAGP--AH  166 (542)
T ss_pred             HcCeEEEEcCccCCHHHHHHHHHhCCCcEEEEccchHHHHHHhhhccCccceEEEecCCCcccccCHHHHhhccCC--CC
Confidence            9999999999999999999999999999999998766544321     111 222211      123333222111  11


Q ss_pred             cccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCC-CCCCEEEEeCchhhHHhHHHHHHHHHhCCeEE
Q 015325          185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR-VSPAVMLFTMPYFHIYGLFFCFRAAALMETAV  263 (409)
Q Consensus       185 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~-~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v  263 (409)
                      .......+++++++|||||||.||+|.+||+++...+......+ +. ...+++++..|++|.+|+..++.++..|++++
T Consensus       167 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~g~~~~~~~l~~G~~~v  245 (542)
T PRK07786        167 APVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTGQAMTCLRTN-GADINSDVGFVGVPLFHIAGIGSMLPGLLLGAPTV  245 (542)
T ss_pred             CCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHHHHHHHHHhc-CCCCCCceEEEecchHHHHHHHHHHHHHHccCEEE
Confidence            22234557899999999999999999999999998887777666 34 67899999999999999988999999999999


Q ss_pred             Eec--CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccC
Q 015325          264 VMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG  341 (409)
Q Consensus       264 ~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  341 (409)
                      +.+  .+++..+++.++++++|.+.++|+++..+.......... .+||.+++||+++++++++++++.|++.++++.||
T Consensus       246 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~-~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG  324 (542)
T PRK07786        246 IYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRD-LALRVLSWGAAPASDTLLRQMAATFPEAQILAAFG  324 (542)
T ss_pred             EccCCCcCHHHHHHHHHHcCCeEEEehHHHHHHHHhCcccCccC-cceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeec
Confidence            875  579999999999999999999999999999875543333 36999999999999999999999999999999999


Q ss_pred             cccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       342 ~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +||++...+...........+++|+|++++.++|+| ++++++++|+.|||+++|+.++.||++++.
T Consensus       325 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~  390 (542)
T PRK07786        325 QTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVD-ENMNDVPVGEVGEIVYRAPTLMSGYWNNPE  390 (542)
T ss_pred             ccccccceEecCcccccccCCCccccCCCceEEEEC-CCCCCCcCCCceEEEEEChhhhhhhcCCHH
Confidence            999987655433333334568899999999999999 889999999999999999999999998863

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=3.8e-49  Score=388.25  Aligned_cols=355  Identities=25%  Similarity=0.323  Sum_probs=300.2

Q ss_pred             HHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhC
Q 015325           40 AVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG  119 (409)
Q Consensus        40 ~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G  119 (409)
                      +.+.|...+.++    |+++|+.+.  ++++||+||.+++.++|+.|++ .|+++|++|+++++|+.+++++++||+++|
T Consensus         2 ~~~~~~~~~~~~----p~~~a~~~~--~~~~ty~~l~~~v~~~a~~l~~-~g~~~~~~V~i~~~n~~~~~~~~lA~~~~G   74 (515)
T TIGR03098         2 LHHLLEDAAARL----PDATALVHH--DRTLTYAALSERVLALASGLRG-LGLARGERVAIYLDKRLETVTAMFGAALAG   74 (515)
T ss_pred             HHHHHHHHHHHC----CCCeEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHhcC
Confidence            567787888878    999999987  7899999999999999999999 999999999999999999999999999999


Q ss_pred             CeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC------CeEEEeCCC-----------cchhhhcccCCcc
Q 015325          120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSP-----------EFDSMTMSWNSKH  182 (409)
Q Consensus       120 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~------~~~~~~~~~-----------~~~~~~~~~~~~~  182 (409)
                      ++++|+++..+.+++..+++++++++++++.+....+....      ..++.++..           .|+++.....   
T Consensus        75 ~~~v~l~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  151 (515)
T TIGR03098        75 GVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGD---  151 (515)
T ss_pred             EEEEeCCCCCCHHHHHHHHHcCCCeEEEEccchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccc---
Confidence            99999999999999999999999999999876654433211      122223321           2333222111   


Q ss_pred             cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeE
Q 015325          183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETA  262 (409)
Q Consensus       183 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~  262 (409)
                      .........+++++++|||||||.||+|.+||+++...+......+ ....+|++++.+|++|.+++..++.++..|+++
T Consensus       152 ~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~  230 (515)
T TIGR03098       152 ADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNLVAGAQSVATYL-ENRPDDRLLAVLPLSFDYGFNQLTTAFYVGATV  230 (515)
T ss_pred             ccccCCCCcCCeEEEEECCCCCCCCceEEEecHHHHHHHHHHHHHh-CCCcccEEEEECchhhHhHHHHHHHHHHcCCEE
Confidence            1112233457899999999999999999999999998888777766 678899999999999999998889999999999


Q ss_pred             EEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCc
Q 015325          263 VVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL  342 (409)
Q Consensus       263 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  342 (409)
                      ++.+.++++.+++.++++++|++.++|+++..|.+... ....++++|.++++|+++++++.+++++.+++..+++.||+
T Consensus       231 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~  309 (515)
T TIGR03098       231 VLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGL  309 (515)
T ss_pred             EEcCCCCHHHHHHHHHHcCCceEecChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeecc
Confidence            99988999999999999999999999999999987532 22356889999999999999999999999988999999999


Q ss_pred             ccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       343 tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ||++..... ........++++|+|+++++++|+| ++|++++.|+.|||+++|+.++.|||+++.
T Consensus       310 tE~~~~~~~-~~~~~~~~~~~vG~~~~~~~~~i~~-~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~  373 (515)
T TIGR03098       310 TEAFRSTYL-PPEEVDRRPDSIGKAIPNAEVLVLR-EDGSECAPGEEGELVHRGALVAMGYWNDPE  373 (515)
T ss_pred             ccccceEec-ccccccCCCCCcceecCCCEEEEEC-CCCCCCCCCCceEEEEcCchhhccccCCch
Confidence            998754433 2222345678999999999999999 789999999999999999999999998763

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=6e-50  Score=405.13  Aligned_cols=360  Identities=21%  Similarity=0.238  Sum_probs=281.0

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCC-------------------------CCceeeHHHHHHHHHHHHHHhHhccC
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSV-------------------------TGLRVSFSEFTRRTNSLASYLQNVTR   91 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~-------------------------~~~~~Ty~el~~~~~~la~~L~~~~g   91 (409)
                      ..|+.+.|...++++    |+++|+....                         ..+++||+||.++++++|+.|++ +|
T Consensus        68 ~~t~~~~~~~~~~~~----p~~~a~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lTy~el~~~~~~lA~~L~~-~G  142 (700)
T PTZ00216         68 GPNFLQRLERICKER----GDRRALAYRPVERVEKEVVKDADGKERTMEVTHFNETRYITYAELWERIVNFGRGLAE-LG  142 (700)
T ss_pred             CCCHHHHHHHHHHhC----CCCCeEEEeccccccccccccCCCccccccccccCCceEeEHHHHHHHHHHHHHHHHH-hC
Confidence            368999999999999    9999998731                         24789999999999999999999 99


Q ss_pred             CCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhh------c-CCeEE
Q 015325           92 LSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK------L-KHRTI  164 (409)
Q Consensus        92 v~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~------~-~~~~~  164 (409)
                      +++||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++......+..      . ...++
T Consensus       143 v~~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~s~~~~lv~~~~~~~~l~~~~~~~~~~~~~ii  222 (700)
T PTZ00216        143 LTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDALAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTII  222 (700)
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHHHcCCeEEeeCCCCCHHHHHhhhhccCccEEEECHHHHHHHHHhhhhccCCceEEE
Confidence            9999999999999999999999999999999999999999999999999999999998765443321      1 12344


Q ss_pred             EeCCC------------cchhhhcccC--CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--
Q 015325          165 LIDSP------------EFDSMTMSWN--SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--  228 (409)
Q Consensus       165 ~~~~~------------~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--  228 (409)
                      .++..            .|+++...+.  ...........++++++|+|||||||.||||++||+++++.+......+  
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~  302 (700)
T PTZ00216        223 YLDSLPASVDTEGCRLVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLND  302 (700)
T ss_pred             EECCCccccccCCceEEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhccc
Confidence            43321            1333322221  0001112234678999999999999999999999999998877665433  


Q ss_pred             --CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHH-------HHHHhcceeEeechHHHHHHHhCC
Q 015325          229 --PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLK-------AVEEFRVTHAAVTPPIVVAMSKGG  299 (409)
Q Consensus       229 --~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~-------~i~~~~~t~l~~~p~~l~~l~~~~  299 (409)
                        ....+.|++++.+|++|.++.......+..|+++.+.   ++..+.+       .++++++|++.++|.+++.+.+..
T Consensus       303 ~~~~~~~~d~~ls~lPl~H~~~~~~~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~  379 (700)
T PTZ00216        303 LIGPPEEDETYCSYLPLAHIMEFGVTNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAV  379 (700)
T ss_pred             ccCCCCCCCEEEEEChHHHHHHHHHHHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHH
Confidence              1236789999999999999985556667788877663   4555554       688999999999999998876421


Q ss_pred             CC-------------------------CCCC---------------C-CCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325          300 ST-------------------------DGYD---------------L-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQ  338 (409)
Q Consensus       300 ~~-------------------------~~~~---------------l-~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  338 (409)
                      ..                         ....               + ++||.+++||+++++++.++++..+ + ++++
T Consensus       380 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~-~-~l~~  457 (700)
T PTZ00216        380 EAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVF-G-MVIQ  457 (700)
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHh-h-hHhh
Confidence            00                         0000               1 5799999999999999998888777 6 9999


Q ss_pred             ccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCC-CCCCCCCCcceEEEecCccccccCCCCC
Q 015325          339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPET-GDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~-g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .||+||+++..+..  .......+++|+|++|++++|+|.+. +...+++..|||+|+||+++.|||++|.
T Consensus       458 ~YG~TEt~~~~~~~--~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe  526 (700)
T PTZ00216        458 GWGLTETVCCGGIQ--RTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEE  526 (700)
T ss_pred             ccCccccccccccc--CCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChh
Confidence            99999997665542  22344578999999999999999432 2334567789999999999999999875

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.5e-49  Score=396.07  Aligned_cols=366  Identities=18%  Similarity=0.244  Sum_probs=288.6

Q ss_pred             CCCCCHHHHHhh-ccCCCCCCCCCCcEEEeC----CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchH
Q 015325           35 DAPISAVDYVSS-LRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP  109 (409)
Q Consensus        35 ~~~~~~~~~l~~-~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~  109 (409)
                      +..+|++..+.+ .+..+    |+++|+++.    +..+++||+||.++++++|+.|++ .|+++||+|+++++|+++++
T Consensus        49 ~~~~n~~~~~l~~~~~~~----p~~~A~~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~  123 (629)
T PRK10524         49 GGRTNLCHNAVDRHLAKR----PEQLALIAVSTETDEERTYTFRQLHDEVNRMAAMLRS-LGVQRGDRVLIYMPMIAEAA  123 (629)
T ss_pred             CcEeeHHHHHHHHhhccC----CCCeEEEEEcCCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHH
Confidence            455888666554 44555    999999863    124689999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH---------HHHh---h----cCCeEEEeCCC----
Q 015325          110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKLA---K----LKHRTILIDSP----  169 (409)
Q Consensus       110 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~---~----~~~~~~~~~~~----  169 (409)
                      ++++||+++|++++|+++.++.+++.+++++++++++|+++...         +.+.   .    ....++..+..    
T Consensus       124 ~~~lA~~~~Gav~v~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~  203 (629)
T PRK10524        124 FAMLACARIGAIHSVVFGGFASHSLAARIDDAKPVLIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRHVLLVDRGLAPM  203 (629)
T ss_pred             HHHHHHHHhCcEEEeeCCCCCHHHHHHHHHhcCCcEEEEccCcccCCcccccHHHHHHHHHhcCCCCCEEEEEeCCCCCc
Confidence            99999999999999999999999999999999999999976321         1111   1    11123333211    


Q ss_pred             --------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHH-hhccCCCCCCCCEEEEe
Q 015325          170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPKRVSPAVMLFT  240 (409)
Q Consensus       170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~d~~l~~  240 (409)
                              .+.++....... ........++++++++|||||||.||||+++|++++..... ....+ +..++|++++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~  281 (629)
T PRK10524        204 ARVAGRDVDYATLRAQHLGA-RVPVEWLESNEPSYILYTSGTTGKPKGVQRDTGGYAVALATSMDTIF-GGKAGETFFCA  281 (629)
T ss_pred             CcccCCcccHHHHHhcCCCC-CCCceeeCCCCceEEEeecCCCCCCceEEECCcHHHHHHHHHHHHhc-CCCCCCEEEEc
Confidence                    111111111100 11112245688999999999999999999999987654433 33344 67889999999


Q ss_pred             CchhhHHhH-HHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceee
Q 015325          241 MPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVA  313 (409)
Q Consensus       241 ~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~  313 (409)
                      .|++|..+. +.++.++..|+++++.+.    +++..+++.|+++++|++.++|++++.|.+...  ....++++||.++
T Consensus       282 ~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~  361 (629)
T PRK10524        282 SDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNRMFSAPTAIRVLKKQDPALLRKHDLSSLRALF  361 (629)
T ss_pred             CCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceEEEeCHHHHHHHHhcCcccccccChhheeEEE
Confidence            999998886 678999999999999863    578999999999999999999999999887643  2345678999999


Q ss_pred             ecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC--CCCCCCCCccccccCCceEEEecCCCCCCCCCCCcce
Q 015325          314 CGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG--PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE  391 (409)
Q Consensus       314 ~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~--~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Ge  391 (409)
                      +||+++++++.+++.+.+ ++++++.||+||++..+.....  .......+++|+|++|++++|+|+++|++++.|+.||
T Consensus       362 ~~Ge~l~~~~~~~~~~~~-~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Ge  440 (629)
T PRK10524        362 LAGEPLDEPTASWISEAL-GVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGV  440 (629)
T ss_pred             EeCCCCCHHHHHHHHHhc-CCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEE
Confidence            999999999999999998 8899999999999753322111  1123456889999999999999954999999999999


Q ss_pred             EEEecC---ccccccCCCCC
Q 015325          392 LSIRGP---TIMKGIFLPHF  408 (409)
Q Consensus       392 i~v~g~---~v~~gY~~~~~  408 (409)
                      |+++||   +++.|||+++.
T Consensus       441 l~i~gp~~~~~~~~~~~~~~  460 (629)
T PRK10524        441 LVIEGPLPPGCMQTVWGDDD  460 (629)
T ss_pred             EEEcCCCChhhcCCccCChH
Confidence            999998   57889998763

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=5.5e-49  Score=397.26  Aligned_cols=364  Identities=18%  Similarity=0.244  Sum_probs=288.0

Q ss_pred             CCCCCHHHHHhhcc-CCCCCCCCCCcEEEeCCCC------ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCc
Q 015325           35 DAPISAVDYVSSLR-ATLPWRDDDTVALINSVTG------LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE  107 (409)
Q Consensus        35 ~~~~~~~~~l~~~~-~~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~  107 (409)
                      +..+|+.+.+.++. .+.    |+++|++..+++      +++||+||.++++++|+.|++ +|+++||+|+++++|+++
T Consensus       171 g~~ln~~~~~l~~~~~~~----pd~~Ai~~~~e~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrVai~~pn~~e  245 (728)
T PLN03052        171 GAVLNVAECCLTPKPSKT----DDSIAIIWRDEGSDDLPVNRMTLSELRSQVSRVANALDA-LGFEKGDAIAIDMPMNVH  245 (728)
T ss_pred             CCEeEHHHHHHHHHhccC----CCCeEEEEECCCCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHH
Confidence            55689988777654 345    999999976332      479999999999999999999 999999999999999999


Q ss_pred             hHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHH---------HHhh-cCCeEEEeC----------
Q 015325          108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KLAK-LKHRTILID----------  167 (409)
Q Consensus       108 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~-~~~~~~~~~----------  167 (409)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|+++....         .+.+ ....++.+.          
T Consensus       246 ~via~LA~~~~Gav~vpi~p~~~~~~l~~rl~~~~~k~lit~d~~~~~gk~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~  325 (728)
T PLN03052        246 AVIIYLAIILAGCVVVSIADSFAPSEIATRLKISKAKAIFTQDVIVRGGKSIPLYSRVVEAKAPKAIVLPADGKSVRVKL  325 (728)
T ss_pred             HHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEEcCccccCCcccchHHHHHHhcCCcEEEEeCCCCcccccc
Confidence            99999999999999999999999999999999999999999875321         1111 111122221          


Q ss_pred             ---CCcchhhhcccCC---cccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeC
Q 015325          168 ---SPEFDSMTMSWNS---KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTM  241 (409)
Q Consensus       168 ---~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~  241 (409)
                         ...|++++.....   ...........+++++|+|||||||.||||+++|.+++.........+ .+.++|++++..
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-~l~~~d~~~~~~  404 (728)
T PLN03052        326 REGDMSWDDFLARANGLRRPDEYKAVEQPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-DIRKGDIVCWPT  404 (728)
T ss_pred             ccCCccHHHHHhccccccccccccccccCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-CCCCCcEEEECC
Confidence               1123333322110   001111123458899999999999999999999999877665555555 678899999999


Q ss_pred             chhhHHhHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCC
Q 015325          242 PYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG  320 (409)
Q Consensus       242 p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~  320 (409)
                      |++|+++.+.++.+|..|+++++.++ +++..++++++++++|++.++|+++..|.+.......++++||.++++|++++
T Consensus       405 ~l~w~~g~~~v~~~L~~Gat~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~  484 (728)
T PLN03052        405 NLGWMMGPWLVYASLLNGATLALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASS  484 (728)
T ss_pred             CcHHHhHHHHHHHHHHhCCEEEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCC
Confidence            99999998888899999999999975 46678999999999999999999999998876556678899999999999999


Q ss_pred             HHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCC--cceEEEecCc
Q 015325          321 KDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK--EGELSIRGPT  398 (409)
Q Consensus       321 ~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~--~Gei~v~g~~  398 (409)
                      ++...++.+.++..++.+.||+||+++.+.... ......++++|.|++|++++|+| ++|++++.|+  .|||+++++.
T Consensus       485 ~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~-~~~~~~~g~~g~p~~g~~v~v~d-~~g~~v~~g~~~~GEL~v~~~~  562 (728)
T PLN03052        485 VDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGS-LLQPQAFAAFSTPAMGCKLFILD-DSGNPYPDDAPCTGELALFPLM  562 (728)
T ss_pred             HHHHHHHHHhcCCCCeEeeccChhhCcccccCC-CCCCCCCCccccCCCCceEEEEC-CCCCCCCCCCCceEEEEEeCCC
Confidence            999888888774468999999999976543321 22234568899999999999999 8999999985  5999998652


Q ss_pred             --cccccCCC
Q 015325          399 --IMKGIFLP  406 (409)
Q Consensus       399 --v~~gY~~~  406 (409)
                        ...+|+|+
T Consensus       563 ~~~~~~~~~~  572 (728)
T PLN03052        563 FGASSTLLNA  572 (728)
T ss_pred             CCCCccccCc
Confidence              23345543

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.4e-49  Score=397.93  Aligned_cols=357  Identities=22%  Similarity=0.291  Sum_probs=286.0

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCC-------CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSV-------TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI  110 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~  110 (409)
                      .|+.+.|.+.++.+    |+++|+++.+       ..+.+||+||.++++++|+.|++ . +++||+|+++++|++++++
T Consensus        21 ~~l~~~l~~~a~~~----~~~~a~~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~-~~~gd~V~i~~~n~~e~~~   94 (631)
T PRK07769         21 TNLVRHVERWAKVR----GDKLAYRFLDFSTERDGVARDLTWSQFGARNRAVGARLQQ-V-TKPGDRVAILAPQNLDYLI   94 (631)
T ss_pred             CCHHHHHHHHHHhC----CCCeEEEEeccCCCCCCceeEeeHHHHHHHHHHHHHHHHH-h-cCCCCEEEEEcCCChHHHH
Confidence            78999999988888    9999998631       12579999999999999999998 6 8999999999999999999


Q ss_pred             HHHHHHHhCCeEccC-CCCCC--HHHHHHHHhhcCCeEEEEcCchHHHHhhc----C----CeEEEeCCCcchhhhcccC
Q 015325          111 LYFSLLSLGVIISPA-NPVNT--ESEISRQIQLSNPVIAFATSSVVHKLAKL----K----HRTILIDSPEFDSMTMSWN  179 (409)
Q Consensus       111 ~~~A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~  179 (409)
                      ++|||+++|++++|+ ++..+  .+++.+++++++++++|++.+....+.+.    .    ..++.++.  +....  ..
T Consensus        95 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~  170 (631)
T PRK07769         95 AFFGALYAGRIAVPLFDPAEPGHVGRLHAVLDDCTPSAILTTTDSAEGVRKFFRARPAKERPRVIAVDA--VPDEV--GA  170 (631)
T ss_pred             HHHHHHHcCCEEEeeCCCCccchHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhccccccceEEEccc--ccccc--cc
Confidence            999999999999999 55554  68899999999999999988665443221    1    12222221  10000  00


Q ss_pred             CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhC
Q 015325          180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM  259 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G  259 (409)
                         ........++++++|+|||||||.||||++||+++...+......+ +...+++++..+|++|.+|+..++.+++.|
T Consensus       171 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~Pl~h~~gl~~~~~~~~~G  246 (631)
T PRK07769        171 ---TWVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-EGQEGDRGVSWLPFFHDMGLITVLLPALLG  246 (631)
T ss_pred             ---ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-CCCCcceEEEeCCCcCchhhHHHHHHHhhC
Confidence               1111234568999999999999999999999999998877776666 678899999999999999997777788899


Q ss_pred             CeEEEecC--C--CHHHHHHHHHHhcc---eeEeechHHHHHHHhCC---C--CCCCCCCCcceeeecCCCCCHHHHHHH
Q 015325          260 ETAVVMQR--F--DLKMMLKAVEEFRV---THAAVTPPIVVAMSKGG---S--TDGYDLSSLETVACGAAPLGKDTIMAF  327 (409)
Q Consensus       260 ~~~v~~~~--~--~~~~~~~~i~~~~~---t~l~~~p~~l~~l~~~~---~--~~~~~l~~Lr~v~~~G~~~~~~~~~~~  327 (409)
                      +++++...  +  ++..+++.++++++   +.+.++|+++..+....   .  ....++++||.+++||+++++++.++|
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~  326 (631)
T PRK07769        247 HYITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKF  326 (631)
T ss_pred             CeEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHH
Confidence            99988853  4  89999999999986   78999999887766531   1  114568899999999999999999999


Q ss_pred             HHhCC-----CCceecccCcccccceecccCCCCC-------------------------CCCCCccccccCCceEEEec
Q 015325          328 ASKFP-----KVVLVQAYGLTESTAGVFRTVGPDE-------------------------CRRWGSTGRLSAGLEAKIVD  377 (409)
Q Consensus       328 ~~~~~-----~~~i~~~yG~tE~~~~~~~~~~~~~-------------------------~~~~~s~G~p~~~~~v~i~d  377 (409)
                      .+.|+     ...+++.||+||++..++.......                         .....++|+|+++++++|+|
T Consensus       327 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd  406 (631)
T PRK07769        327 NEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVD  406 (631)
T ss_pred             HHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEc
Confidence            99872     3469999999998765554221110                         00124789999999999999


Q ss_pred             CCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          378 PETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       378 ~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +++|++++.|+.|||+|+||+++.||||+++
T Consensus       407 ~~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~  437 (631)
T PRK07769        407 PETASELPDGQIGEIWLHGNNIGTGYWGKPE  437 (631)
T ss_pred             CCCCcCCCCCCEEEEEecCCCccccccCChh
Confidence            8899999999999999999999999999874

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=5.4e-49  Score=390.85  Aligned_cols=365  Identities=28%  Similarity=0.334  Sum_probs=303.1

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|.+.+.++    |+++|+++.+.+.++||+||.++++++|+.|.+ .|+++|++|+++++|++++++++|||++
T Consensus        16 ~~l~~~l~~~~~~~----~~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~~   90 (559)
T PRK08315         16 QTIGQLLDRTAARY----PDREALVYRDQGLRWTYREFNEEVDALAKGLLA-LGIEKGDRVGIWAPNVPEWVLTQFATAK   90 (559)
T ss_pred             ccHHHHHHHHHHHC----CCCeEEEEcCCCeEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence            78999999999988    999999986557899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHH-----HHh----hc---------------CCeEEEeCC-----
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-----KLA----KL---------------KHRTILIDS-----  168 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-----~~~----~~---------------~~~~~~~~~-----  168 (409)
                      +|++++|+++..+.+++.++++.+++++++++.....     .+.    ++               ...++..+.     
T Consensus        91 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (559)
T PRK08315         91 IGAILVTINPAYRLSELEYALNQSGCKALIAADGFKDSDYVAMLYELAPELATCEPGQLQSARLPELRRVIFLGDEKHPG  170 (559)
T ss_pred             hCeEEEecCccCCHHHHHHHHHhcCCCEEEEeccccccchHHHHHHhhhhhhcccccccccccCCCceeEEeecccCCcc
Confidence            9999999999999999999999999999999865321     111    00               001222221     


Q ss_pred             -CcchhhhcccCCc----ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCch
Q 015325          169 -PEFDSMTMSWNSK----HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY  243 (409)
Q Consensus       169 -~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~  243 (409)
                       ..+.++.......    .........++++++++|||||||.||+|.+||++++..+......+ ++..+|+++...|+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~~~~~p~  249 (559)
T PRK08315        171 MLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIGEAM-KLTEEDRLCIPVPL  249 (559)
T ss_pred             cccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHHHhc-CCCCCceEEEecCc
Confidence             1222222111000    00111234568899999999999999999999999998888877777 78899999999999


Q ss_pred             hhHHhH-HHHHHHHHhCCeEEEe-cCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCH
Q 015325          244 FHIYGL-FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK  321 (409)
Q Consensus       244 ~~~~g~-~~~~~~l~~G~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~  321 (409)
                      +|.+++ ..++.++..|+++++. ..+++..+++.++++++|.+.++|+++..++.........+++||.+++||++++.
T Consensus       250 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~lr~~~~~G~~~~~  329 (559)
T PRK08315        250 YHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELDHPDFARFDLSSLRTGIMAGSPCPI  329 (559)
T ss_pred             HHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHhCcccCCCCchhhheeEecCCCCCH
Confidence            999998 6789999999999854 46899999999999999999999999999988766666678999999999999999


Q ss_pred             HHHHHHHHhCCCCceecccCcccccceecccCCC-CCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccc
Q 015325          322 DTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM  400 (409)
Q Consensus       322 ~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~-~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~  400 (409)
                      ++.+++.+.++..++++.||+||++..++..... .......++|+|+++++++|+|+++|++++.|+.|||+|+|++++
T Consensus       330 ~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~  409 (559)
T PRK08315        330 EVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVM  409 (559)
T ss_pred             HHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhh
Confidence            9999999999666799999999998765543221 122356789999999999999977799999999999999999999


Q ss_pred             cccCCCCC
Q 015325          401 KGIFLPHF  408 (409)
Q Consensus       401 ~gY~~~~~  408 (409)
                      .|||+++.
T Consensus       410 ~gy~~~~~  417 (559)
T PRK08315        410 KGYWNDPE  417 (559)
T ss_pred             hhhcCChh
Confidence            99998863

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=8.3e-49  Score=387.44  Aligned_cols=364  Identities=23%  Similarity=0.316  Sum_probs=300.4

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCC----CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY  112 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~  112 (409)
                      ..++.+.+...+..+    |+++|++...    ....+||+||+++++++|.+|++ .|+++|++|+++++|+.++++++
T Consensus        21 ~~~~~~~~~~~~~~~----p~~~a~~~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~   95 (538)
T TIGR03208        21 DRTINDHFDAAVANC----PDKPALTAYRDGHGAVRRFSYRELDCRVDRIAVGLAR-LGVGRGDVVSFQLPNRWEFTALY   95 (538)
T ss_pred             cCcHHHHHHHHHHHC----CCceEEEeecccCCCcceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHH
Confidence            368999999999888    9999998521    24689999999999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH-----HHHhh----c-C-CeEEEeCCC---cchhhhccc
Q 015325          113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLAK----L-K-HRTILIDSP---EFDSMTMSW  178 (409)
Q Consensus       113 ~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~----~-~-~~~~~~~~~---~~~~~~~~~  178 (409)
                      +||+++|++++|+++..+.+++.++++.++++++++++...     .....    . . ..++..+..   .++..+...
T Consensus        96 la~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (538)
T TIGR03208        96 LACARIGAVLNPLMPIFRERELSFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTP  175 (538)
T ss_pred             HHHHhcCEEEeccCcccCHHHHHHHHHhcCCeEEEEccccccccHHHHHHHHhccCCcceEEEEecCCCCcCHHHHhhcc
Confidence            99999999999999999999999999999999999987532     11111    1 1 123333221   222222111


Q ss_pred             CCc--cc----ccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HH
Q 015325          179 NSK--HE----LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FF  251 (409)
Q Consensus       179 ~~~--~~----~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~  251 (409)
                      ...  ..    .......++++++++|||||||.||+|+++|+++...+......+ +...+|++++.+|++|..++ ..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~  254 (538)
T TIGR03208       176 ERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTANTLFSNIHPYAERL-ELGGGDVILMASPMAHQTGFMYG  254 (538)
T ss_pred             ccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeehHHHHHHHHHHHhhc-CCCCCCeEEEeCCchhHHHHHHH
Confidence            000  00    111234568999999999999999999999999998888877777 67889999999999999887 67


Q ss_pred             HHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhC
Q 015325          252 CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF  331 (409)
Q Consensus       252 ~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~  331 (409)
                      ++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.........+++++|.+++||+++++++.++|.+.+
T Consensus       255 ~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~  334 (538)
T TIGR03208       255 LMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELL  334 (538)
T ss_pred             HHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEecCHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHc
Confidence            89999999999999889999999999999999999999999998876544445678999999999999999999999998


Q ss_pred             CCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          332 PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       332 ~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                       ++++++.||+||++...+............++|+|+++++++|+| ++|++++.|+.|||+++|+.++.|||++|.
T Consensus       335 -~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~  409 (538)
T TIGR03208       335 -GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVID-ANGAKLSQGETGRLLVRGCSNFGGYLKRPH  409 (538)
T ss_pred             -CCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEEC-CCCCCCcCCCCcEEEEecCcccccccCCcc
Confidence             899999999999977655422221122346789999999999999 789999999999999999999999999864

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1.1e-49  Score=459.30  Aligned_cols=354  Identities=19%  Similarity=0.250  Sum_probs=306.7

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.++|.++++++    |+++|++++  ++++||+||.++++++|+.|++ .|+++|++|+|+++|++++++++|||++
T Consensus      3095 ~~~~~l~~~~a~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~gv~~g~~V~l~~~~s~~~vv~~lavl~ 3167 (3956)
T PRK12467       3095 RLVHQLIEAQVART----PEAPALVFG--DQQLSYAELNRRANRLAHRLIA-IGVGPDVLVGVAVERSVEMIVALLAVLK 3167 (3956)
T ss_pred             ccHHHHHHHHHHhC----CCcceEeeC--CcccCHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEeCCCHHHHHHHHHHHh
Confidence            68999999999999    999999998  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-CCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA  196 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (409)
                      +|++++|++|.++.+++.++++.+++++++++......+... ....+.++......   .   ..........+++++|
T Consensus      3168 aGa~~vpld~~~p~~rl~~il~~~~~~~vlt~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~a~ 3241 (3956)
T PRK12467       3168 AGGAYVPLDPEYPRERLAYMIEDSGVKLLLTQAHLLEQLPAPAGDTALTLDRLDLNG---Y---SENNPSTRVMGENLAY 3241 (3956)
T ss_pred             hCcEeecCCCCChHHHHHHHHhCCCCcEEEechhhhhhcccccCCceeeecchhhcc---c---CCCCCcccCCCCceEE
Confidence            999999999999999999999999999999998765544321 22233333211110   0   0112223456789999


Q ss_pred             EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC--CCHHHHH
Q 015325          197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR--FDLKMML  274 (409)
Q Consensus       197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~  274 (409)
                      |+|||||||.||||+++|+++.+.+......+ ++.++|+++...|++|..+.+.++.++..|+++++.+.  +++..++
T Consensus      3242 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~l~ 3320 (3956)
T PRK12467       3242 VIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-ELDANDRVLLFMSFSFDGAQERFLWTLICGGCLVVRDNDLWDPEELW 3320 (3956)
T ss_pred             EEEccCCCCCcceeeehhHHHHHHHHHHHHhc-CCCcCCEEEEecCccHhHHHHHHHHHHhCCCEEEECCcccCCHHHHH
Confidence            99999999999999999999999998888888 78999999999999999999999999999999999875  7899999


Q ss_pred             HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325          275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG  354 (409)
Q Consensus       275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  354 (409)
                      +.|.++++|++.++|+++..+.+...  ..++++||.+++|||++++++.++|.+.++++.++|.||+||++..++....
T Consensus      3321 ~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 3398 (3956)
T PRK12467       3321 QAIHAHRISIACFPPAYLQQFAEDAG--GADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKC 3398 (3956)
T ss_pred             HHHHHcCCEEEEcCHHHHHHHHhccc--ccCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEec
Confidence            99999999999999999999987532  3357889999999999999999999999988999999999999876654322


Q ss_pred             CCC---CCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          355 PDE---CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       355 ~~~---~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ...   .....++|+|++|++++|+| ++++++|.|+.|||+|+|+++++||||+|.
T Consensus      3399 ~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~ 3454 (3956)
T PRK12467       3399 GGDAVCEAPYAPIGRPVAGRSIYVLD-GQLNPVPVGVAGELYIGGVGLARGYHQRPS 3454 (3956)
T ss_pred             ccccccCCCCCCCccccCCCEEEEEC-CCCCCCCCCCCceEEEcchhhhhhccCCcc
Confidence            111   12346899999999999999 899999999999999999999999999874

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.9e-49  Score=395.55  Aligned_cols=365  Identities=22%  Similarity=0.264  Sum_probs=284.3

Q ss_pred             CCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCC--C--ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcC
Q 015325           28 PIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT--G--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLST  103 (409)
Q Consensus        28 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~--~--~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~  103 (409)
                      ..++|+.....++.+.|.+.++++    |+++|+++.+.  +  +++||+||.++++++|++|++ .|+++||+|+++++
T Consensus        39 ~~~~~~~~~~~~l~~~l~~~a~~~----pd~~a~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~V~i~~~  113 (624)
T PRK12582         39 KSRHPLGPYPRSIPHLLAKWAAEA----PDRPWLAQREPGHGQWRKVTYGEAKRAVDALAQALLD-LGLDPGRPVMILSG  113 (624)
T ss_pred             ecCCCCCCcccCHHHHHHHHHHHC----CCchheecccCCCCceEEeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecC
Confidence            345666666789999999999998    99999987521  1  689999999999999999999 99999999999999


Q ss_pred             CCCchHHHHHHHHHhCCeEccCCCCCCH-----HHHHHHHhhcCCeEEEEcCch--HHHHh---hcCCeEEEeCCC----
Q 015325          104 NSIEIPILYFSLLSLGVIISPANPVNTE-----SEISRQIQLSNPVIAFATSSV--VHKLA---KLKHRTILIDSP----  169 (409)
Q Consensus       104 ~~~~~~~~~~A~~~~G~~~v~l~~~~~~-----~~l~~~l~~~~~~~ii~~~~~--~~~~~---~~~~~~~~~~~~----  169 (409)
                      |+++++++++||+++|++++|+++.++.     +++.+++++++++++|+++..  ...+.   ....+++..+..    
T Consensus       114 n~~e~~~~~lA~~~~G~v~vpl~p~~~~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  193 (624)
T PRK12582        114 NSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAKLKHLFDLVKPRVVFAQSGAPFARALAALDLLDVTVVHVTGPGEGI  193 (624)
T ss_pred             CCHHHHHHHHHHHHcCCeEeeccCccccccCCHHHHHHHHHhcCCcEEEecCHHHHHHHHHhhhhcCceEEEEcCCCccc
Confidence            9999999999999999999999998874     899999999999999998642  11111   123334443321    


Q ss_pred             ---cchhhhcccCCc-ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCC---CCCEEEEeCc
Q 015325          170 ---EFDSMTMSWNSK-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV---SPAVMLFTMP  242 (409)
Q Consensus       170 ---~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~---~~d~~l~~~p  242 (409)
                         .+.++....... .........++++++|+|||||||.||||++||+++........... ...   ..++++..+|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~~~~~~~l~~lP  272 (624)
T PRK12582        194 ASIAFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLR-PREPDPPPPVSLDWMP  272 (624)
T ss_pred             ccccHHHHhhcCCcchhhhhhccCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhc-cccCCCCCceEEEech
Confidence               123322211100 00011234568999999999999999999999999987776654443 222   2579999999


Q ss_pred             hhhHHhH-HHHHHHHHhCCeEEEecC-CCH---HHHHHHHHHhcceeEeechHHHHHHHhCCCCC----CCCCCCcceee
Q 015325          243 YFHIYGL-FFCFRAAALMETAVVMQR-FDL---KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD----GYDLSSLETVA  313 (409)
Q Consensus       243 ~~~~~g~-~~~~~~l~~G~~~v~~~~-~~~---~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~----~~~l~~Lr~v~  313 (409)
                      ++|.+++ ..++.++..|+++++.+. +++   ..+++.++++++|++.++|.++..|.+.....    ...+++||.++
T Consensus       273 l~h~~g~~~~~~~~l~~G~tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~  352 (624)
T PRK12582        273 WNHTMGGNANFNGLLWGGGTLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMA  352 (624)
T ss_pred             HHHHHhHHHHHHHHHhCceEEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEE
Confidence            9999998 566788999999998753 333   45677788999999999999999887643211    22467899999


Q ss_pred             ecCCCCCHHHHHHHHHhC-----CCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCC
Q 015325          314 CGAAPLGKDTIMAFASKF-----PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK  388 (409)
Q Consensus       314 ~~G~~~~~~~~~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~  388 (409)
                      +||+++++++.++|.+.+     .++++++.||+||++..++..  .......+++|+|+||++++|++        .|+
T Consensus       353 ~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~--~~~~~~~~svG~p~pg~~v~i~~--------~G~  422 (624)
T PRK12582        353 YGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGT--HWDTERVGLIGLPLPGVELKLAP--------VGD  422 (624)
T ss_pred             ecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecc--cCCCCCCCCCCcCCCCcEEEEcc--------CCC
Confidence            999999999999999863     146899999999997765531  12235578999999999999964        478


Q ss_pred             cceEEEecCccccccCCCCC
Q 015325          389 EGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       389 ~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .|||+|+|++++.|||++|.
T Consensus       423 ~GEl~vrg~~v~~GY~~~p~  442 (624)
T PRK12582        423 KYEVRVKGPNVTPGYHKDPE  442 (624)
T ss_pred             ceEEEEECCcccccccCCcc
Confidence            89999999999999999875

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.5e-49  Score=390.66  Aligned_cols=362  Identities=27%  Similarity=0.410  Sum_probs=299.2

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.+.+.+.++    |+++|+++.  ++.+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++||++
T Consensus        32 ~~l~~~~~~~~~~~----p~~~a~~~~--~~~~Ty~ql~~~~~~~A~~L~~-~gi~~gd~V~l~~~n~~~~~~~~lA~~~  104 (573)
T PRK05605         32 TTLVDLYDNAVARF----GDRPALDFF--GATTTYAELGKQVRRAAAGLRA-LGVRPGDRVAIVLPNCPQHIVAFYAVLR  104 (573)
T ss_pred             CCHHHHHHHHHHHC----CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            68999999999988    999999987  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCe-EEEeCC------------------------
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDS------------------------  168 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~-~~~~~~------------------------  168 (409)
                      +|++++|+++.++.+++.+++++++++++|+++.....+..+    ... ++..+.                        
T Consensus       105 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (573)
T PRK05605        105 LGAVVVEHNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLALRLPIPALRKARA  184 (573)
T ss_pred             cCcEEeecCcCCCHHHHHHHHhccCCcEEEechhhHHHHHhhhhccccceeEeeeccccccccccccccccccccccccc
Confidence            999999999999999999999999999999987655443221    111 111110                        


Q ss_pred             ---------CcchhhhcccCCc--ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCC-CCCCCE
Q 015325          169 ---------PEFDSMTMSWNSK--HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAV  236 (409)
Q Consensus       169 ---------~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~d~  236 (409)
                               ..|.++.......  ..........+++++++|||||||.||+|.+||+++...+......+.+ ....++
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~  264 (573)
T PRK05605        185 ALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPER  264 (573)
T ss_pred             ccccCCCcceeHHHHhhccccccccccCCCCCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccccCCCCcE
Confidence                     0111111110000  0011123456889999999999999999999999998776654444322 235789


Q ss_pred             EEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeec
Q 015325          237 MLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACG  315 (409)
Q Consensus       237 ~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~  315 (409)
                      +++..|++|.+|+ ..++.++..|+++++.+.++++.+++.++++++|.+.++|++++.|.+........+++||.+++|
T Consensus       265 ~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~g  344 (573)
T PRK05605        265 VLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSG  344 (573)
T ss_pred             EEEecChHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEEC
Confidence            9999999999998 667788999999999988999999999999999999999999999998776666678999999999


Q ss_pred             CCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCC-CCCCCCCCcceEEE
Q 015325          316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPET-GDSLPPGKEGELSI  394 (409)
Q Consensus       316 G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~-g~~~~~g~~Gei~v  394 (409)
                      |+++++++.++|.+.+ +.++++.||+||+++.++... ......++++|+|++++.++|+|+++ +++++.|+.|||++
T Consensus       345 g~~l~~~~~~~~~~~~-~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v  422 (573)
T PRK05605        345 AMALPVSTVELWEKLT-GGLLVEGYGLTETSPIIVGNP-MSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLV  422 (573)
T ss_pred             CCcCCHHHHHHHHHHh-CCCeecccccchhchhhhcCC-cccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEE
Confidence            9999999999999988 889999999999987655422 22234467899999999999999666 69999999999999


Q ss_pred             ecCccccccCCCCC
Q 015325          395 RGPTIMKGIFLPHF  408 (409)
Q Consensus       395 ~g~~v~~gY~~~~~  408 (409)
                      +|+.++.||++++.
T Consensus       423 ~~~~~~~gy~~~~~  436 (573)
T PRK05605        423 RGPQVFKGYWNRPE  436 (573)
T ss_pred             ecCchhhhhcCChh
Confidence            99999999998764

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5e-49  Score=388.76  Aligned_cols=361  Identities=20%  Similarity=0.229  Sum_probs=285.9

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|.+.++++    |+++|+++.+.+..+||+||.++++++|+.|.+ .|+++|++|+++++|++++++++|||++
T Consensus        14 ~~~~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~e~~~~~lA~~~   88 (540)
T PRK05857         14 STVLDRVFEQARQQ----PEAIALRRCDGTSALRYRELVAEVGGLAADLRA-QSVSRGSRVLVISDNGPETYLSVLACAK   88 (540)
T ss_pred             cchHHHHHHHHhhC----CCcEEEeecCCCceeeHHHHHHHHHHHHHHHHH-hCcCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            68999999999998    999999875445789999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CCeEEEeCCCcchh-hhcccCCcccccccccCC
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHRTILIDSPEFDS-MTMSWNSKHELDRAKVCQ  191 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  191 (409)
                      +|++++|+++..+.+++.++++.++++++|+++........+     ....+.++...... .................+
T Consensus        89 ~G~v~v~l~~~~~~~~l~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (540)
T PRK05857         89 LGAIAVMADGNLPIAAIERFCQITDPAAALVAPGSKMASSAVPEALHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGS  168 (540)
T ss_pred             cCeEEEecCccCCHHHHHHHHHhcCCceEEEeccchhccccccccccccceeEeecccccccccccccccccccccCCCC
Confidence            999999999999999999999999999999987643221111     11222222111000 000000000111223456


Q ss_pred             CCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc----cCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC
Q 015325          192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA----SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR  267 (409)
Q Consensus       192 ~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~  267 (409)
                      +++++++|||||||.||||.+||+++.........    .+ ....+++.+..+|++|.++++..+.++..|+++++ ..
T Consensus       169 ~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~~l~~~~~~l~~G~~~v~-~~  246 (540)
T PRK05857        169 EDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNWV-TWVVGETTYSPLPATHIGGLWWILTCLMHGGLCVT-GG  246 (540)
T ss_pred             CCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhcccccc-ccccCceeeecCCccccchHHHHHHHhhcceeEEe-cC
Confidence            88999999999999999999999999876543321    12 35567899999999999999878899999998876 45


Q ss_pred             CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccc
Q 015325          268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA  347 (409)
Q Consensus       268 ~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~  347 (409)
                      .++..+++.|+++++|+++++|+++..+.+.......+++++|.+++||++++....+ |.+.+ ++++++.||+||++.
T Consensus       247 ~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~-~~~~~-g~~i~~~YG~TE~~~  324 (540)
T PRK05857        247 ENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVR-FIEAT-GVRTAQVYGLSETGC  324 (540)
T ss_pred             CChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHH-HHHHh-CCeeecccCCCcCCc
Confidence            6889999999999999999999999999987665566789999999999999988775 55566 899999999999976


Q ss_pred             eecccCCCCC---CCCCCccccccCCceEEEecCCCCC-CC-----CCCCcceEEEecCccccccCCCCC
Q 015325          348 GVFRTVGPDE---CRRWGSTGRLSAGLEAKIVDPETGD-SL-----PPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       348 ~~~~~~~~~~---~~~~~s~G~p~~~~~v~i~d~~~g~-~~-----~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ..........   ....+++|+|++|++++|+| ++++ ++     +.|+.|||+|+|++++.|||+++.
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~  393 (540)
T PRK05857        325 TALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAA-TDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPE  393 (540)
T ss_pred             eeeecccccccccccccCCcCcccCCcEEEEEC-ccccCccccccCCCCCcceEEEeCcchhhhhhCCcc
Confidence            4433221111   12457899999999999999 5554 33     457899999999999999999874

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.2e-49  Score=386.64  Aligned_cols=360  Identities=23%  Similarity=0.323  Sum_probs=307.1

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.++|...+.++    |+++|+++.  +..+||+||.+++.++|+.|.+ .|+++|++|+++++|+.+++++++||++
T Consensus        11 ~~l~~~l~~~a~~~----~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gi~~~~~V~l~~~~~~~~~~~~~a~~~   83 (523)
T PRK08316         11 QTIGDILRRSARRY----PDKTALVFG--DRSWTYAELDAAVNRVAAALLD-LGLKKGDRVAALGHNSDAYALLWLACAR   83 (523)
T ss_pred             CCHHHHHHHHHHHC----CCCeEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHh
Confidence            67999999999988    999999988  7899999999999999999999 8999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCeEEEe-C----------CCcchhhhcccCCcc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILI-D----------SPEFDSMTMSWNSKH  182 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~-~----------~~~~~~~~~~~~~~~  182 (409)
                      +|++++|+++..+.+++.++++.+++++++++.+....+...    ....... .          ...+.........  
T Consensus        84 ~G~~~v~l~~~~~~~~i~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  161 (523)
T PRK08316         84 AGAVHVPVNFMLTGEELAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAGSV--  161 (523)
T ss_pred             cCcEEEecccccCHHHHHHHHHhCCCCEEEEccchHHHHHHHhhhcCccceeeeecccccccccchhhHHHHHhcCCC--
Confidence            999999999999999999999999999999998776555421    1111110 0          0111111111110  


Q ss_pred             cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCe
Q 015325          183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMET  261 (409)
Q Consensus       183 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~  261 (409)
                      .........+++++++|||||||.||+|.+||+++..........+ ++.++++++..+|++|.+++ ..++.++..|++
T Consensus       162 ~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~~~~G~~  240 (523)
T PRK08316        162 AEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-DMSADDIPLHALPLYHCAQLDVFLGPYLYVGAT  240 (523)
T ss_pred             ccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCCceEEEccCCchhhhHHHHHHHHHhcCce
Confidence            1122345678899999999999999999999999998887777777 68899999999999999998 556778999999


Q ss_pred             EEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccC
Q 015325          262 AVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG  341 (409)
Q Consensus       262 ~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  341 (409)
                      +++.+..++..++..++++++|++.++|+++..+.+....+..++++||.+++||++++.++.+.+++.+++.++++.||
T Consensus       241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG  320 (523)
T PRK08316        241 NVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYG  320 (523)
T ss_pred             EEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeec
Confidence            99998889999999999999999999999999999887666677889999999999999999999999998999999999


Q ss_pred             cccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       342 ~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +||++...+...........+++|+|+++++++|+| ++|++++.|+.|||+++|++++.||++++.
T Consensus       321 ~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~  386 (523)
T PRK08316        321 QTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVD-DDGNDVAPGEVGEIVHRSPQLMLGYWDDPE  386 (523)
T ss_pred             ccccCccccccCccccccccCCcccCCCCcEEEEEc-CCCCCCCCCCcceEEEECCchhhhhcCCHH
Confidence            999987665533323334568899999999999999 789999999999999999999999998753

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=1.4e-48  Score=383.10  Aligned_cols=356  Identities=24%  Similarity=0.350  Sum_probs=300.8

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      -++.+.+.+++ .+    |+++|+.+. +++.+||.||.++++++|+.|++ .|+++||+|+++++|+.+++++++||++
T Consensus         3 ~~l~~~~~~~~-~~----~~~~a~~~~-~~~~~Ty~eL~~~~~~la~~L~~-~g~~~gd~v~i~~~~~~e~~v~~la~~~   75 (504)
T PRK07514          3 NNLFDALRAAF-AD----RDAPFIETP-DGLRYTYGDLDAASARLANLLVA-LGVKPGDRVAVQVEKSPEALALYLATLR   75 (504)
T ss_pred             ccHHHHHHHHh-hC----CCCeEEEeC-CCCEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            57889999999 77    999999874 36799999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCe-EEEeCCCc---chhhhcccCCccccccccc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDSPE---FDSMTMSWNSKHELDRAKV  189 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~  189 (409)
                      +|++++|+++..+.+++..+++.++++++++++.....+...    ... ++.++...   +.+......  ........
T Consensus        76 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  153 (504)
T PRK07514         76 AGAVFLPLNTAYTLAELDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTGSLLEAAAAAP--DDFETVPR  153 (504)
T ss_pred             cCcEEEECCCCCCHHHHHHHHHhCCCcEEEEccchhHHHHHhhhccCCceEEEecCCCcccHHHhhhhcC--cccCcccC
Confidence            999999999999999999999999999999998766554322    222 33333211   111111111  01122344


Q ss_pred             CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCC
Q 015325          190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRF  268 (409)
Q Consensus       190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~  268 (409)
                      .++++++++|||||||.||+|.+||+++...+......+ +..++|++++..|++|..++ ..++.++..|+++++.+..
T Consensus       154 ~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~  232 (504)
T PRK07514        154 GADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-RFTPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKF  232 (504)
T ss_pred             CCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-CCCCccEEEEecchHHHHHHHHHHHHHHhcCcEEEECCCC
Confidence            678999999999999999999999999998887777666 67889999999999999998 6788999999999999989


Q ss_pred             CHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccce
Q 015325          269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG  348 (409)
Q Consensus       269 ~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~  348 (409)
                      ++..+++.+  +++|.+.++|+++..++.........++++|.+++||+++++++.+.|++.+ +.++++.||+||++..
T Consensus       233 ~~~~~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~  309 (504)
T PRK07514        233 DPDAVLALM--PRATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERT-GHAILERYGMTETNMN  309 (504)
T ss_pred             CHHHHHHHH--HhheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHh-CCcceeeccccccccc
Confidence            999999999  4799999999999999987665566688999999999999999999999998 7899999999998754


Q ss_pred             ecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       349 ~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .+.  .........++|.|+++++++|+||+++++++.|+.|||+|+|++++.||++++.
T Consensus       310 ~~~--~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~  367 (504)
T PRK07514        310 TSN--PYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPE  367 (504)
T ss_pred             ccC--CccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCch
Confidence            432  2222334578999999999999999999999999999999999999999999874

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=5.6e-49  Score=425.48  Aligned_cols=353  Identities=18%  Similarity=0.217  Sum_probs=301.4

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|.+.+..+    |+++|++++  +..+||+||.++++++|+.|.+ .|+++|++|+++++++.+++++++||++
T Consensus       458 ~~l~~~~~~~~~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~la~~L~~-~g~~~g~~V~l~~~~~~~~i~~~la~~~  530 (1296)
T PRK10252        458 TTLSALVAQQAAKT----PDAPALADA--RYQFSYREMREQVVALANLLRE-RGVKPGDSVAVALPRSVFLTLALHAIVE  530 (1296)
T ss_pred             CCHHHHHHHHHHhC----CCCeEEEcC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            68999999999988    999999998  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC-CeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA  196 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (409)
                      +|++++|++++.+.+++.++++.+++++++++.+....+.... ......+.     ......   ........++++++
T Consensus       531 ~G~~~vpld~~~p~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~~~~~~~~~~a~  602 (1296)
T PRK10252        531 AGAAWLPLDTGYPDDRLKMMLEDARPSLLITTADQLPRFADVPDLTSLCYNA-----PLAPQG---AAPLQLSQPHHTAY  602 (1296)
T ss_pred             hCCEEEecCccCHHHHHHHHHHhCCCCEEEECcchhhhcccCCCceeeeccc-----cccccc---CCCCCCCCCCCeEE
Confidence            9999999999999999999999999999999987655543321 11111111     110000   01111235788999


Q ss_pred             EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec---CCCHHHH
Q 015325          197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ---RFDLKMM  273 (409)
Q Consensus       197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~---~~~~~~~  273 (409)
                      |+|||||||.||||+++|+++.+.+.+....+ ++.+.|++++..|++|..+++.++.++..|+++++.+   ..++..+
T Consensus       603 i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~~  681 (1296)
T PRK10252        603 IIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-PLTADDVVLQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAM  681 (1296)
T ss_pred             EEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEeCCcchhhhHHHHHHHHhCCCEEEECChhccCCHHHH
Confidence            99999999999999999999999998888888 7899999999999999999999999999999999986   3689999


Q ss_pred             HHHHHHhcceeEeechHHHHHHHhCCCCC--CCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecc
Q 015325          274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFR  351 (409)
Q Consensus       274 ~~~i~~~~~t~l~~~p~~l~~l~~~~~~~--~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~  351 (409)
                      ++.++++++|++.++|+++..+++.....  ...+++||.+++||+++++++.++|.+.+ ++++++.||+||++..++.
T Consensus       682 ~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-~~~l~n~YG~TE~~~~~~~  760 (1296)
T PRK10252        682 QQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLT-GAPLHNLYGPTEAAVDVSW  760 (1296)
T ss_pred             HHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcC-CCEEEeCCCcchhhheeee
Confidence            99999999999999999999988764322  23467899999999999999999999987 8999999999999876654


Q ss_pred             cCCCCC-----CCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          352 TVGPDE-----CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       352 ~~~~~~-----~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ......     .....++|+|+++++++|+| +++++++.|+.|||+|+|++++.||++++.
T Consensus       761 ~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~  821 (1296)
T PRK10252        761 YPAFGEELAAVRGSSVPIGYPVWNTGLRILD-ARMRPVPPGVAGDLYLTGIQLAQGYLGRPD  821 (1296)
T ss_pred             eecccccccccCCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEecccccchhhCCCcc
Confidence            322111     23356799999999999999 899999999999999999999999999874

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=2.1e-48  Score=383.58  Aligned_cols=361  Identities=24%  Similarity=0.291  Sum_probs=299.4

Q ss_pred             CCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      ++..++.+++.+.+..+    |+++|++++  ++++||+||.++++++|..|.+ .|+++|++|+++++|+.+++++++|
T Consensus        20 ~~~~~l~~~~~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~V~i~~~~~~~~~~~~la   92 (527)
T TIGR02275        20 WQDKPLTDILRDQAARY----PDAIAIICG--NRQWSYRELDQRADNLAAGLTK-LGIGQGDTAVVQLPNIAEFYIVFFA   92 (527)
T ss_pred             ccCCcHHHHHHHHHHHC----CCceEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHH
Confidence            34478999999999888    999999987  7899999999999999999999 9999999999999999999999999


Q ss_pred             HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH--------HHHhh-c-CCeE-EEeCCC----cchhhhcccC
Q 015325          115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLAK-L-KHRT-ILIDSP----EFDSMTMSWN  179 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~-~-~~~~-~~~~~~----~~~~~~~~~~  179 (409)
                      |+++|++++++++..+.+++.++++.+++++++++....        ..+.. . .... +.....    ..........
T Consensus        93 ~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (527)
T TIGR02275        93 LLKLGIAPVLALFSHRKSELTAYAQQIEPALYIIDRAHSLFDYDAFARQLQSKLPTLRNIIVAGQTRVEAELFLWLESPA  172 (527)
T ss_pred             HHHcCeEEeccccccCHHHHHHHHHhcCCcEEEEcCcccccchHHHHHHHHhhCCcceEEEEecCCCCcchhhHHhhCcC
Confidence            999999999999999999999999999999999986531        11111 1 1111 111111    0111111110


Q ss_pred             CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHH--HHHHHHH
Q 015325          180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAA  257 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~--~~~~~l~  257 (409)
                      .  ........++++++++|||||||.||+|.+||+++...+......+ ....+|++++.+|++|.+++.  .++.++.
T Consensus       173 ~--~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~  249 (527)
T TIGR02275       173 E--PVKFPPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-WLTQQTRYLCALPAAHNYPLSSPGALGVFY  249 (527)
T ss_pred             c--cccCCCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcCCEEEECCChHhhhhhhHHHHHHHHh
Confidence            0  1112244678999999999999999999999999998888777766 688899999999999999984  5788999


Q ss_pred             hCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCcee
Q 015325          258 LMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV  337 (409)
Q Consensus       258 ~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~  337 (409)
                      .|+++++.+.+++..++..++++++|++.++|+++..+.+........+++||.+++||+++++++.+++++.+ +++++
T Consensus       250 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~  328 (527)
T TIGR02275       250 AGGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVF-GCQLQ  328 (527)
T ss_pred             cCCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHh-CCeEE
Confidence            99999998888999999999999999999999999999887666666788999999999999999999999998 89999


Q ss_pred             cccCcccccceecccCCCCCCCCCCcccccc-CCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          338 QAYGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       338 ~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~-~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +.||+||++..... ..........++|+|+ ++.+++|+| ++|+++++|+.|||+++|+.++.|||+++.
T Consensus       329 ~~YG~tE~~~~~~~-~~~~~~~~~~~~G~~~~~~~~v~i~d-~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~  398 (527)
T TIGR02275       329 QVFGMAEGLVNYTR-LDDPAEIIFTTQGRPMSPDDEVRVVD-DHGNPVAPGETGMLLTRGPYTFRGYYKAPE  398 (527)
T ss_pred             eeeccCccCccccC-CCCccccccccCCCCCCCCceEEEEC-CCCCCCCCCCceEEEecCCccchhhcCChh
Confidence            99999996543322 1112223456899999 588999999 889999999999999999999999999864

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=2.8e-48  Score=384.58  Aligned_cols=359  Identities=24%  Similarity=0.353  Sum_probs=297.1

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.++|...++++    ||++|++++ +++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||++
T Consensus        23 ~~l~~~~~~~~~~~----pd~~a~~~~-~~~~~Ty~~l~~~v~~la~~l~~-~G~~~gd~V~i~~~n~~~~~~~~lA~~~   96 (547)
T PRK06087         23 ASLADYWQQTARAM----PDKIAVVDN-HGASYTYSALDHAASRLANWLLA-KGIEPGDRVAFQLPGWCEFTIIYLACLK   96 (547)
T ss_pred             CCHHHHHHHHHHHC----CCceEEEcC-CCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            67999999999988    999999976 34799999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCch-----HHHHh----hc-CC-eEEEeCCC-------cchhhhcccC
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSV-----VHKLA----KL-KH-RTILIDSP-------EFDSMTMSWN  179 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~-----~~~~~----~~-~~-~~~~~~~~-------~~~~~~~~~~  179 (409)
                      +|++++|+++..+.+++.++++.++++++++++..     ...+.    .. .. .++.++..       .+.++.....
T Consensus        97 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (547)
T PRK06087         97 VGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADYE  176 (547)
T ss_pred             cCcEEeccchhcCHHHHHHHHHhcCCeEEEEecccccccHHHHHHHHHhhCCCCcEEEEeCCcCCCcCccCHHHHhccCC
Confidence            99999999999999999999999999999997632     11111    11 11 23332211       1112221111


Q ss_pred             CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHh
Q 015325          180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAAL  258 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~  258 (409)
                      .  .........+++++|+|||||||.||+|.++|++++.........+ +..+.|++++..|++|.+++ ..++.++..
T Consensus       177 ~--~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~  253 (547)
T PRK06087        177 P--LTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARL-NLTWQDVFMMPAPLGHATGFLHGVTAPFLI  253 (547)
T ss_pred             c--ccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeEEEecchHHHHHHHHHHHHHHhc
Confidence            1  1112234568899999999999999999999999988877766666 68899999999999999998 678889999


Q ss_pred             CCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325          259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ  338 (409)
Q Consensus       259 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  338 (409)
                      |+++++.+.+++..++..++++++|++.++|+.+..+++.......++++||.+++||+++++++.+++.+.  ++++++
T Consensus       254 g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~--~~~l~~  331 (547)
T PRK06087        254 GARSVLLDIFTPDACLALLEQQRCTCMLGATPFIYDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR--GIKLLS  331 (547)
T ss_pred             CCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHHHHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc--CCcEEE
Confidence            999999999999999999999999999998888777777655555677899999999999999999988764  899999


Q ss_pred             ccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .||+||++...+............++|+|++++.++++| ++++++++|+.|||+++|++++.|||++++
T Consensus       332 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~  400 (547)
T PRK06087        332 VYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVD-EARKTLPPGCEGEEASRGPNVFMGYLDEPE  400 (547)
T ss_pred             EecccccCCccccCCCcchhhcCCcCCccCCCceEEEEc-CCCCCCcCCCcceEEEecccccccccCCHH
Confidence            999999987655422211122346789999999999999 899999999999999999999999999864

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=5.4e-49  Score=395.03  Aligned_cols=362  Identities=20%  Similarity=0.219  Sum_probs=281.8

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCC-----CC--ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSV-----TG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI  110 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~  110 (409)
                      .|+.+.|.+.++++    |+++|+....     .+  ..+||+|+.++++++|+.|.+ .|+++||+|+|+++|+++|++
T Consensus        42 ~t~~~~~~~~~~~~----p~~~al~~~~~~~~~~~~~~~~Ty~el~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~ew~~  116 (660)
T PLN02430         42 TTAWDIFSKSVEKY----PDNKMLGWRRIVDGKVGPYMWKTYKEVYEEVLQIGSALRA-SGAEPGSRVGIYGSNCPQWIV  116 (660)
T ss_pred             CCHHHHHHHHHHhC----CCCceEEEEecCCCCCCCcEEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHH
Confidence            68999999999998    9999996421     11  347999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHH-HHhh----c-CCe-EEEeCCC--------------
Q 015325          111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-KLAK----L-KHR-TILIDSP--------------  169 (409)
Q Consensus       111 ~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-~~~~----~-~~~-~~~~~~~--------------  169 (409)
                      +++||+++|++++|+++.++.+++.+++++++++++|++..... .+..    . ..+ ++.++..              
T Consensus       117 ~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~  196 (660)
T PLN02430        117 AMEACAAHSLICVPLYDTLGPGAVDYIVDHAEIDFVFVQDKKIKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVK  196 (660)
T ss_pred             HHHHHHHcCCeEEEeccCCCHHHHHHHHhccCCCEEEECHHHHHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcE
Confidence            99999999999999999999999999999999999999875332 2211    1 122 3333211              


Q ss_pred             --cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhcc---C-CCCCCCCEEEEeCch
Q 015325          170 --EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS---S-PKRVSPAVMLFTMPY  243 (409)
Q Consensus       170 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~---~-~~~~~~d~~l~~~p~  243 (409)
                        .|+++...+... ........++++++|+|||||||.||||++||+++...+......   + ..+...|++++.+|+
T Consensus       197 ~~~~~~~~~~~~~~-~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~~~~~~~~~~~~~~~~~~~~~~~~d~~ls~lPl  275 (660)
T PLN02430        197 TYSWIDFLHMGKEN-PSETNPPKPLDICTIMYTSGTSGDPKGVVLTHEAVATFVRGVDLFMEQFEDKMTHDDVYLSFLPL  275 (660)
T ss_pred             EEEHHHHHHhhccC-CCCCCCcCcCceEEEEECCCCCCCCCEEEeecHHHHHHHHHHHhhccccccCCCCCCEEEEeCcH
Confidence              122322222111 111223357899999999999999999999999998877655322   1 135788999999999


Q ss_pred             hhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCC-----------------------
Q 015325          244 FHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS-----------------------  300 (409)
Q Consensus       244 ~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~-----------------------  300 (409)
                      +|.++....+.++..|+++++... ++..+++.|+++++|++.++|.+++.+.+...                       
T Consensus       276 ~H~~~~~~~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~  354 (660)
T PLN02430        276 AHILDRMIEEYFFRKGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLA  354 (660)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            999998656677899999988754 78899999999999999999999987764210                       


Q ss_pred             --------CCCCC-------------C-CCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCC
Q 015325          301 --------TDGYD-------------L-SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDEC  358 (409)
Q Consensus       301 --------~~~~~-------------l-~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~  358 (409)
                              .....             + ++||.+++||+++++++.+.+ +.+.++.+++.||+||+++.++... ....
T Consensus       355 ~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~l~~~~~~~~-~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~  432 (660)
T PLN02430        355 WMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAPLSTEIEEFL-RVTSCAFVVQGYGLTETLGPTTLGF-PDEM  432 (660)
T ss_pred             HHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCCCCHHHHHHH-HHhcCCCeeeecchhhhhhceEeec-cccC
Confidence                    00000             1 579999999999999986655 4553678999999999987665422 2223


Q ss_pred             CCCCccccccCCceEEEec-CCCC-CCCCCCCcceEEEecCccccccCCCCC
Q 015325          359 RRWGSTGRLSAGLEAKIVD-PETG-DSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       359 ~~~~s~G~p~~~~~v~i~d-~~~g-~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ..++++|+|+++++++|+| ++.| .+++.+..|||+|+||+++.|||++|.
T Consensus       433 ~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vrg~~v~~GY~~~~e  484 (660)
T PLN02430        433 CMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPE  484 (660)
T ss_pred             CCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEecCCCccccccCChH
Confidence            4568999999999999987 3444 566777889999999999999999874

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.9e-48  Score=391.59  Aligned_cols=365  Identities=19%  Similarity=0.176  Sum_probs=289.6

Q ss_pred             CCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCC---CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCC
Q 015325           30 DLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT---GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI  106 (409)
Q Consensus        30 ~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~---~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~  106 (409)
                      .|.+ +..+|+.+.+.++  .+    |+++|+++.+.   .+++||+||.+++.++|+.|++ .|+++||+|+++++|++
T Consensus        79 ~wf~-~~~~n~~~~~~~~--~~----~~~~Al~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~V~i~~~n~~  150 (655)
T PRK03584         79 RWFP-GARLNYAENLLRH--RR----DDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRA-LGVGPGDRVAAYLPNIP  150 (655)
T ss_pred             eeCC-CCEeeHHHHhhcc--CC----CCCeEEEEECCCCceEEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCH
Confidence            4443 5568999988874  45    89999997522   2689999999999999999999 99999999999999999


Q ss_pred             chHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH---------HHHh----hcC-C-eEEEeCC---
Q 015325          107 EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKLA----KLK-H-RTILIDS---  168 (409)
Q Consensus       107 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~----~~~-~-~~~~~~~---  168 (409)
                      ++++++|||+++|++++++++.++.+++.+++++++++++|+++...         ..+.    ... . .++.++.   
T Consensus       151 e~v~~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  230 (655)
T PRK03584        151 ETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQIEPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGP  230 (655)
T ss_pred             HHHHHHHHHHHcCcEEEeeCCCCCHHHHHHHHHHcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEecCCC
Confidence            99999999999999999999999999999999999999999976431         1111    111 1 2222221   


Q ss_pred             ----------CcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHH-HHHhhccCCCCCCCCEE
Q 015325          169 ----------PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA-VASSFASSPKRVSPAVM  237 (409)
Q Consensus       169 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~d~~  237 (409)
                                ..|.++...... ..........+++++|+|||||||.||||++||++++.. .......+ .+.++|++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~  308 (655)
T PRK03584        231 AAAAAALPGALLWEDFLAPAEA-AELEFEPVPFDHPLWILYSSGTTGLPKCIVHGHGGILLEHLKELGLHC-DLGPGDRF  308 (655)
T ss_pred             cccccccCCcccHHHHhhcccc-CCCCceecCCCCcEEEEecCCCCCCCceEEECccHHHHHHHHHHHHhc-CCCCCCEE
Confidence                      112333221110 011223445689999999999999999999999987644 44444455 67889999


Q ss_pred             EEeCchhhHHhHHHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcce
Q 015325          238 LFTMPYFHIYGLFFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLET  311 (409)
Q Consensus       238 l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~  311 (409)
                      ++..++.|..+. .++.++..|+++++.++    +++..+++.++++++|++.++|+++..+.+...  ....++++||.
T Consensus       309 ~~~~~~~~~~~~-~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~  387 (655)
T PRK03584        309 FWYTTCGWMMWN-WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGVTVFGTSAKYLDACEKAGLVPGETHDLSALRT  387 (655)
T ss_pred             EEcCCchHHhHH-HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCCEEEEcCHHHHHHHHhcCCCccccCChhheEE
Confidence            999999887543 46789999999999853    589999999999999999999999999987532  23456889999


Q ss_pred             eeecCCCCCHHHHHHHHHhC-CCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcc
Q 015325          312 VACGAAPLGKDTIMAFASKF-PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEG  390 (409)
Q Consensus       312 v~~~G~~~~~~~~~~~~~~~-~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~G  390 (409)
                      +++||+++++++.++|.+.+ +++.+.+.||+||+++..... .......++++|.|++|++++|+| ++|+++ .|+.|
T Consensus       388 i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~-~~~~~~~~g~~g~p~~g~~~~ivd-~~g~~~-~g~~G  464 (655)
T PRK03584        388 IGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGG-NPLLPVYRGEIQCRGLGMAVEAWD-EDGRPV-VGEVG  464 (655)
T ss_pred             EEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccC-CCCCCcCCCccCCCcCCceeEEEC-CCCCCC-CCCce
Confidence            99999999999999999998 468899999999986544321 222334568899999999999999 889999 89999


Q ss_pred             eEEEecC--ccccccCCCCC
Q 015325          391 ELSIRGP--TIMKGIFLPHF  408 (409)
Q Consensus       391 ei~v~g~--~v~~gY~~~~~  408 (409)
                      ||+|+||  +++.|||+++.
T Consensus       465 eL~v~gp~p~~~~gy~~~~~  484 (655)
T PRK03584        465 ELVCTKPFPSMPLGFWNDPD  484 (655)
T ss_pred             EEEEccCCCCCcceeeCCCc
Confidence            9999996  79999999874

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-48  Score=382.83  Aligned_cols=352  Identities=18%  Similarity=0.211  Sum_probs=292.3

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      +.|+.+.|.+.+..+    |+++|++++  +..+||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+
T Consensus        34 ~~~~~~~~~~~a~~~----p~~~a~~~~--~~~lTy~el~~~~~~la~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~  106 (516)
T PRK13383         34 GTNPYTLLAVTAARW----PGRTAIIDD--DGALSYRELQRATESLARRLTR-DGVAPGRAVGVMCRNGRGFVTAVFAVG  106 (516)
T ss_pred             CCcHHHHHHHHHHHC----CCCcEEEeC--CCcEeHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            488999999888888    999999987  6799999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA  196 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (409)
                      ++|++++|+++.++.+++.++++++++++++++++....+......+..++..... . ...    .  ......++.++
T Consensus       107 ~~G~v~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~----~--~~p~~~~~~~~  178 (516)
T PRK13383        107 LLGADVVPISTEFRSDALAAALRAHHISTVVADNEFAERIAGADDAVAVIDPATAG-A-EES----G--GRPAVAAPGRI  178 (516)
T ss_pred             HhCeEEEEcCccCCHHHHHHHHhcCCCCEEEEchhHHHHHHhhhcceEEeccchhh-h-hcC----C--CCCCCCCCCcE
Confidence            99999999999999999999999999999999987766555433333333321110 0 000    0  01112355678


Q ss_pred             EEcCCCCCCCcchhhhccHHHHHH--HHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHH
Q 015325          197 IMYSSGTTGRVKGVMLTHRNLTAA--VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMML  274 (409)
Q Consensus       197 i~~TSGTTG~pK~v~~s~~~l~~~--~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~  274 (409)
                      ++|||||||.||+|.++|......  ........ +...+|+++...|++|.+++..++.++..|+++++...+++..++
T Consensus       179 il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~pl~h~~g~~~~~~~l~~G~~~~~~~~~~~~~~~  257 (516)
T PRK13383        179 VLLTSGTTGKPKGVPRAPQLRSAVGVWVTILDRT-RLRTGSRISVAMPMFHGLGLGMLMLTIALGGTVLTHRHFDAEAAL  257 (516)
T ss_pred             EEECCCCCCCCCeeeecchhhhhhhhHHhHHhhh-ccCCCCeEEEecCCcchhhHHHHHHHHhcCCEEEECCCCCHHHHH
Confidence            999999999999999999743211  11222334 577889999999999999997788899999999998889999999


Q ss_pred             HHHHHhcceeEeechHHHHHHHhCCCC--CCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325          275 KAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT  352 (409)
Q Consensus       275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~  352 (409)
                      +.++++++|.+.++|+++..+......  ....++++|.+++||+++++++.++|++.| +..+++.||+||++......
T Consensus       258 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~~  336 (516)
T PRK13383        258 AQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTY-GDILYNGYGSTEVGIGALAT  336 (516)
T ss_pred             HHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHc-Cchhhhcccccccccceecc
Confidence            999999999999999999999875432  233578999999999999999999999999 88999999999997655432


Q ss_pred             CCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCC
Q 015325          353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       353 ~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~  407 (409)
                       ........+++|+|+++++++|+| ++|+++++|+.|||+++|+.++.||++++
T Consensus       337 -~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~  389 (516)
T PRK13383        337 -PADLRDAPETVGKPVAGCPVRILD-RNNRPVGPRVTGRIFVGGELAGTRYTDGG  389 (516)
T ss_pred             -ccccccCCCcccCCCCCcEEEEEC-CCCCCCCCCCceEEEEecCcccccccCCc
Confidence             222234567899999999999999 78999999999999999999999999765

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=4.8e-48  Score=381.75  Aligned_cols=355  Identities=24%  Similarity=0.303  Sum_probs=300.4

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.++|.+.++.+    |+++|++++  ++++||.||.+++.++|..|.+ .|+++|++|+++++|+++++++++||++
T Consensus        21 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~v~~la~~L~~-~gi~~g~~V~v~~~n~~~~~~~~lA~~~   93 (542)
T PRK06155         21 RTLPAMLARQAERY----PDRPLLVFG--GTRWTYAEAARAAAAAAHALAA-AGVKRGDRVALMCGNRIEFLDVFLGCAW   93 (542)
T ss_pred             cCHHHHHHHHHHHC----CCCeEEEeC--CccccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence            78999999999999    999999987  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC-----C-eEEEeCCCc-------chhhhcccCCcccc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----H-RTILIDSPE-------FDSMTMSWNSKHEL  184 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~-~~~~~~~~~-------~~~~~~~~~~~~~~  184 (409)
                      +|++++|+++.++.+++.++++++++++++++.+....+....     . .++.++...       +........ ....
T Consensus        94 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  172 (542)
T PRK06155         94 LGAIAVPINTALRGPQLEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPL-DAPA  172 (542)
T ss_pred             hCCEEEEeccccCHHHHHHHHHhcCceEEEEChhhHHHHHHhcccccCcceEEEecCccccccccccchhhhccc-CCCC
Confidence            9999999999999999999999999999999987766554321     1 222333211       000000000 0011


Q ss_pred             cccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEE
Q 015325          185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV  264 (409)
Q Consensus       185 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~  264 (409)
                      ......++++++++|||||||.||+|+++|+++..........+ .+.+.+++++..|++|..++..++.++..|+++++
T Consensus       173 ~~~~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-~~~~~~~~l~~~pl~~~~~~~~~~~~l~~G~~~~~  251 (542)
T PRK06155        173 PAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-EIGADDVLYTTLPLFHTNALNAFFQALLAGATYVL  251 (542)
T ss_pred             CCCCCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-CCCCCCEEEEecCHHHHHHHHHHHHHHHcCceEEe
Confidence            12234568899999999999999999999999988777666666 68899999999999999999778999999999999


Q ss_pred             ecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCccc
Q 015325          265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE  344 (409)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE  344 (409)
                      .+.+++..++..|+++++|.+.++|+++..|.+.........+++|.++.||  +++++.++|++.+ ++++++.||+||
T Consensus       252 ~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~-~~~v~~~YG~tE  328 (542)
T PRK06155        252 EPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERF-GVDLLDGYGSTE  328 (542)
T ss_pred             eCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHc-CCCEEeeecccc
Confidence            9989999999999999999999999999999988766666677899887666  5789999999998 899999999999


Q ss_pred             ccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecC---ccccccCCCCC
Q 015325          345 STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP---TIMKGIFLPHF  408 (409)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~---~v~~gY~~~~~  408 (409)
                      ++..+...   ......+++|.|+++++++|+| +++++++.|+.|||+++|+   +++.||++++.
T Consensus       329 ~~~~~~~~---~~~~~~~~vG~~~~~~~~~i~d-~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~  391 (542)
T PRK06155        329 TNFVIAVT---HGSQRPGSMGRLAPGFEARVVD-EHDQELPDGEPGELLLRADEPFAFATGYFGMPE  391 (542)
T ss_pred             cCccccCC---CCCCCCCCcCccCCCceEEEEC-CCCCCCCCCCceEEEEecCCccccchhhcCCHH
Confidence            98765542   1234567899999999999999 7899999999999999998   79999998763

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-48  Score=383.31  Aligned_cols=359  Identities=31%  Similarity=0.417  Sum_probs=308.5

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      +.++.+.|.+.++.+    |+++|+.+.  +..+||+||+++++++|+.|.+ .|+++|++|+++++|+.+++++++||+
T Consensus         5 ~~~l~~~l~~~~~~~----p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~g~~~~~~V~l~~~~~~~~~~~~la~~   77 (521)
T PRK06187          5 PLTIGRILRHGARKH----PDKEAVYFD--GRRTTYAELDERVNRLANALRA-LGVKKGDRVAVFDWNSHEYLEAYFAVP   77 (521)
T ss_pred             cCCHHHHHHHHHHHC----CCceEEEeC--CceEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            389999999999999    999999998  7789999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC-----C-eEEEeCC----------CcchhhhcccCC
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----H-RTILIDS----------PEFDSMTMSWNS  180 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~-~~~~~~~----------~~~~~~~~~~~~  180 (409)
                      ++|++++++++..+.+++..+++.+++++++++.+..+.+....     . .++..+.          .++.++......
T Consensus        78 ~~G~~~v~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (521)
T PRK06187         78 KIGAVLHPINIRLKPEEIAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASD  157 (521)
T ss_pred             HcCeEEEecccCCCHHHHHHHHHhcCCeEEEEcchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCc
Confidence            99999999999999999999999999999999987766554321     1 2222221          122333222111


Q ss_pred             cccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCC
Q 015325          181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME  260 (409)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~  260 (409)
                        .........+++++++|||||||.||+|.+||+++..........+ +..++|++++..|++|.+++...+.++..|+
T Consensus       158 --~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~l~~G~  234 (521)
T PRK06187        158 --TFDFPDIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWL-KLSRDDVYLVIVPMFHVHAWGLPYLALMAGA  234 (521)
T ss_pred             --cCCCCCCCccceEEEEECCCCCCCCceEEeehHHHHHHHHHHHHhh-CCCCCCEEEEeCCchHHhhHHHHHHHHHhCC
Confidence              1222345668899999999999999999999999998888777777 7899999999999999999866666999999


Q ss_pred             eEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceeccc
Q 015325          261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY  340 (409)
Q Consensus       261 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  340 (409)
                      ++++.+.+++..+++.++++++|.+.++|+++..+..........+++||.+++||++++.++.+.|.+.| ++++++.|
T Consensus       235 ~~v~~~~~~~~~~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~-~~~v~~~Y  313 (521)
T PRK06187        235 KQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKF-GIDLVQGY  313 (521)
T ss_pred             EEEecCCCCHHHHHHHHHHhCCeEEEchHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHh-Ccchheee
Confidence            99999888999999999999999999999999999998776667789999999999999999999999999 99999999


Q ss_pred             CcccccceecccCCCCC----CCCCCccccccCCceEEEecCCCCCCCCC--CCcceEEEecCccccccCCCC
Q 015325          341 GLTESTAGVFRTVGPDE----CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       341 G~tE~~~~~~~~~~~~~----~~~~~s~G~p~~~~~v~i~d~~~g~~~~~--g~~Gei~v~g~~v~~gY~~~~  407 (409)
                      |+||+++.+........    .....++|+|++++.++|+| +++++++.  |+.|||+++|++++.||++++
T Consensus       314 G~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~  385 (521)
T PRK06187        314 GMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVD-DDGDELPPDGGEVGEIIVRGPWLMQGYWNRP  385 (521)
T ss_pred             ccCccCcccccCCcccccccccccCCccccccCCeEEEEEC-CCCCCCCCCCCCeeEEEEECcchhhhhcCCH
Confidence            99999876655322111    13568899999999999999 77899999  999999999999999999874

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-48  Score=382.72  Aligned_cols=363  Identities=22%  Similarity=0.285  Sum_probs=290.6

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      -++.+.|...+.++    |+++|+++.++.+++||+||.++++++|+.|.+ .|+++||+|+++++|+.+++++++||++
T Consensus        16 ~~l~~~l~~~a~~~----p~~~ai~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gv~~gd~V~i~~~n~~~~~~~~lA~~~   90 (534)
T PRK05852         16 PRIADLVEVAATRL----PEAPALVVTADRIAISYRDLARLVDDLAGQLTR-SGLLPGDRVALRMGSNAEFVVALLAASR   90 (534)
T ss_pred             ccHHHHHHHHHHhC----CCCcEEEecCCCCcccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCcHHHHHHHHHHHH
Confidence            67999999999888    999999986545689999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC---Ce-EEEeCCCc------chhhhcc-cCCcccccc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK---HR-TILIDSPE------FDSMTMS-WNSKHELDR  186 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~-~~~~~~~~------~~~~~~~-~~~~~~~~~  186 (409)
                      +|++++++++.++.+++.++++.++++++|++...........   .. .+.+....      +...... .........
T Consensus        91 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (534)
T PRK05852         91 ADLVVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATST  170 (534)
T ss_pred             cCcEEeecCCCCCcHHHHHHHHhCCCCEEEEcCCCcchhccccccccceeeeecccccccccccccccccccCCCccccc
Confidence            9999999999999999999999999999998764332111100   00 11111000      0000000 000000011


Q ss_pred             cccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEe
Q 015325          187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVM  265 (409)
Q Consensus       187 ~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~  265 (409)
                      .....++.++++|||||||.||+|.++|+++...+......+ .+...|++++..|++|.+++ ..++.++..|+++++.
T Consensus       171 ~~~~~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~  249 (534)
T PRK05852        171 PEGLRPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-RLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLP  249 (534)
T ss_pred             cCCCCCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEEeC
Confidence            112246789999999999999999999999998888877777 68899999999999999998 6688889999998886


Q ss_pred             c--CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCC--CCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccC
Q 015325          266 Q--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG  341 (409)
Q Consensus       266 ~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~--~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  341 (409)
                      .  .+++..+++.|+++++|.+.++|+++..+.+.....  ...++++|.+.++|++++++++++|++.| +.++++.||
T Consensus       250 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~-~~~v~~~YG  328 (534)
T PRK05852        250 ARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEF-AAPVVCAFG  328 (534)
T ss_pred             CCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHh-CCChhhccC
Confidence            4  478999999999999999999999999998865432  33467899999999999999999999999 899999999


Q ss_pred             cccccceecccCCCC---CCCCCCccccc--cCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          342 LTESTAGVFRTVGPD---ECRRWGSTGRL--SAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       342 ~tE~~~~~~~~~~~~---~~~~~~s~G~p--~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +||++..++......   ......++|.+  .+|++++|+| ++|+++++|+.|||+|+|+.++.|||+++.
T Consensus       329 ~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d-~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~  399 (534)
T PRK05852        329 MTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVG-SDGLPLPAGAVGEVWLRGTTVVRGYLGDPT  399 (534)
T ss_pred             ccccchhhhcCCccccccccCcccccccCCCCCCCeEEEEC-CCCCCCCCCCceEEEEecCcccchhcCCcc
Confidence            999987655422110   01111234444  7999999999 789999999999999999999999999875

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.1e-48  Score=457.84  Aligned_cols=356  Identities=20%  Similarity=0.232  Sum_probs=307.1

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.++|.+.++++    |+++|++++  ++++||+||.++++++|+.|++ .|+++|++|+++++|+.+++++++||++
T Consensus       511 ~~~~~~~~~~a~~~----p~~~A~~~~--~~~~TY~eL~~~~~~lA~~L~~-~gv~~g~~V~l~~~~s~~~i~~~la~~~  583 (5163)
T PRK12316        511 RGVHRLFEEQVERT----PEAPALAFG--EETLDYAELNRRANRLAHALIE-RGVGPDVLVGVAMERSIEMVVALLAILK  583 (5163)
T ss_pred             CCHHHHHHHHHHHC----CCCeEEEeC--CceEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            67999999999999    999999987  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-CCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA  196 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (409)
                      +|++++|++|.++.+++.++++.+++++++++......+... ...++.++...  ........  ........++++++
T Consensus       584 aG~~~vpld~~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~a~  659 (5163)
T PRK12316        584 AGGAYVPLDPEYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAGVQVLDLDRPA--AWLEGYSE--ENPGTELNPENLAY  659 (5163)
T ss_pred             cCCEEeccCccCcHHHHHHHHHhCCCCEEEEChhhhhhCCcccCceEEEecCcc--hhhccCCC--CCCCCCCCCCCeEE
Confidence            999999999999999999999999999999988665544322 23344333211  11111110  12223456789999


Q ss_pred             EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec---CCCHHHH
Q 015325          197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ---RFDLKMM  273 (409)
Q Consensus       197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~---~~~~~~~  273 (409)
                      |+|||||||.||||+++|+++.+.+.+....+ ++..+++++...|++|..+++.++.++..|+++++.+   .+++..+
T Consensus       660 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~fd~~~~~~~~~L~~G~~l~i~~~~~~~~~~~~  738 (5163)
T PRK12316        660 VIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-GLGVGDTVLQKTPFSFDVSVWEFFWPLMSGARLVVAAPGDHRDPAKL  738 (5163)
T ss_pred             EEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-CCCCCCEEEeeCCeehHHHHHHHHHHHhCCCEEEECCccccCCHHHH
Confidence            99999999999999999999999999888888 7889999999999999999999999999999999985   3789999


Q ss_pred             HHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccC
Q 015325          274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV  353 (409)
Q Consensus       274 ~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~  353 (409)
                      ++.++++++|++.++|++++.|++...  ...+++||.+++|||++++++.++|.+.+++++++|.||+||++..++...
T Consensus       739 ~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~  816 (5163)
T PRK12316        739 VELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWT  816 (5163)
T ss_pred             HHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEe
Confidence            999999999999999999999987543  235789999999999999999999999888999999999999986544332


Q ss_pred             CCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       354 ~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .........++|+|++|++++|+| ++++++|.|+.|||+|+|++++.||+|+|.
T Consensus       817 ~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~  870 (5163)
T PRK12316        817 CVEEGGDSVPIGRPIANLACYILD-ANLEPVPVGVLGELYLAGRGLARGYHGRPG  870 (5163)
T ss_pred             cccccCCCCCCccccCCCEEEEEC-CCCCCCCCCCceEEEecccccChhhCCChh
Confidence            223334557899999999999999 789999999999999999999999999874

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=5.7e-48  Score=383.21  Aligned_cols=360  Identities=26%  Similarity=0.387  Sum_probs=290.1

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhcc-CCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~-gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      .++.+.|...+.++    |+++|+++.  ++.+||.||.++++++|+.|.+ . |+++||+|+++++|+++++++++||+
T Consensus        24 ~~~~~~l~~~~~~~----p~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~~gi~~gd~V~i~~~n~~e~~~~~la~~   96 (562)
T PRK12492         24 KSVVEVFERSCKKF----ADRPAFSNL--GVTLSYAELERHSAAFAAYLQQ-HTDLVPGDRIAVQMPNVLQYPIAVFGAL   96 (562)
T ss_pred             CcHHHHHHHHHHhC----CCCeeEecC--CceeeHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            58999999999888    999999987  7899999999999999999997 5 99999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCeEEEe-C------------------------
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILI-D------------------------  167 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~-~------------------------  167 (409)
                      ++|++++++++..+.+++.+++++++++++++++.....+...    ....... .                        
T Consensus        97 ~~G~v~v~~~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (562)
T PRK12492         97 RAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKLVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKVKKMV  176 (562)
T ss_pred             HcCeEEeccCccCCHHHHHHHHhccCceEEEeccccchHHHHhhhccCceEEEeechhhccccccchhcccccccccccc
Confidence            9999999999999999999999999999999976543322210    0010000 0                        


Q ss_pred             -------CCcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCC--------CC
Q 015325          168 -------SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK--------RV  232 (409)
Q Consensus       168 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~--------~~  232 (409)
                             ...|++....... ..........+++++|+|||||||.||+|+++|+++...+......+..        ..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~  255 (562)
T PRK12492        177 PAYHLPQAVPFKQALRQGRG-LSLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMK  255 (562)
T ss_pred             cccCCcccccHHHHHhccCC-CCCCCCCCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhccccccccccc
Confidence                   0001111111000 0111123456789999999999999999999999997766554443310        12


Q ss_pred             C-CCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEec-CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCc
Q 015325          233 S-PAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL  309 (409)
Q Consensus       233 ~-~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~L  309 (409)
                      . .++++..+|++|.+++ ..++..+..|+++++.. ..++..++..++++++|++.++|+++..+.+.......+++++
T Consensus       256 ~~~~~~~~~~pl~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l  335 (562)
T PRK12492        256 EGQEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSAL  335 (562)
T ss_pred             CCCeEEEEecchHHHHHHHHHHHHHhhcCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccce
Confidence            2 3577899999999998 66777788888877664 4689999999999999999999999999998776566678899


Q ss_pred             ceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCc
Q 015325          310 ETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE  389 (409)
Q Consensus       310 r~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~  389 (409)
                      |.+++||+++++.+.++|++.+ ++++++.||+||++..++... .......+++|+|+++++++|+| ++++++++|+.
T Consensus       336 r~~~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~p~~~~~v~ivd-~~~~~~~~g~~  412 (562)
T PRK12492        336 KLTNSGGTALVKATAERWEQLT-GCTIVEGYGLTETSPVASTNP-YGELARLGTVGIPVPGTALKVID-DDGNELPLGER  412 (562)
T ss_pred             eEEEeccccCCHHHHHHHHHHh-CCceeeccCccccCceeeecC-CcccccCCccceecCCCEEEEEC-CCCCCCCCCCc
Confidence            9999999999999999999988 899999999999987665422 12233457899999999999999 78999999999


Q ss_pred             ceEEEecCccccccCCCCC
Q 015325          390 GELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       390 Gei~v~g~~v~~gY~~~~~  408 (409)
                      |||+|+|+.++.|||+++.
T Consensus       413 Gel~v~g~~~~~gY~~~~~  431 (562)
T PRK12492        413 GELCIKGPQVMKGYWQQPE  431 (562)
T ss_pred             eEEEEeCCccccccccCch
Confidence            9999999999999999874

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=1e-48  Score=451.41  Aligned_cols=357  Identities=20%  Similarity=0.266  Sum_probs=305.4

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|.+.++++    |+++|++++  ++.+||+||.++++++|+.|++ .|+++|++|+++++++++++++++||++
T Consensus      1574 ~~~~~~~~~~a~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~~~~V~l~~~~s~~~vv~~lavlk 1646 (3956)
T PRK12467       1574 RLVHQLIEDQAAAT----PEAVALVFG--EQELTYGELNRRANRLAHRLIA-LGVGPEVLVGIAVERSLEMVVGLLAILK 1646 (3956)
T ss_pred             ccHHHHHHHHHHhC----CCCeEEEeC--CcEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEccCCHHHHHHHHHhhc
Confidence            57999999999999    999999998  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-CCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA  196 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (409)
                      +|++++|++|.++.+++.++++++++++++++......+... ...++.++...  ........  ........+++++|
T Consensus      1647 aG~~~vpldp~~p~~rl~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~ay 1722 (3956)
T PRK12467       1647 AGGAYVPLDPEYPRERLAYMIEDSGIELLLTQSHLQARLPLPDGLRSLVLDQED--DWLEGYSD--SNPAVNLAPQNLAY 1722 (3956)
T ss_pred             cCceeeecCCCCCHHHHHHHHHhCCCCEEEeChhhhhhCccccCCcEEEecccc--chhccCCC--CCCCCCCCCcCcEE
Confidence            999999999999999999999999999999987765544321 22333333211  11111110  11223456789999


Q ss_pred             EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHHH
Q 015325          197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMM  273 (409)
Q Consensus       197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~  273 (409)
                      |+|||||||.||||+++|+++.+.+.+....+ ++...|+++...|++|..+++.++.++..|+++++.+.   .++..+
T Consensus      1723 iiyTSGSTG~PKGV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~lvi~~~~~~~~~~~l 1801 (3956)
T PRK12467       1723 VIYTSGSTGRPKGAGNRHGALVNRLCATQEAY-QLSAADVVLQFTSFAFDVSVWELFWPLINGARLVIAPPGAHRDPEQL 1801 (3956)
T ss_pred             EEECCCcCCCCCEEEEcCHHHHHHHHHHHHhc-CCCcccEEEEecCccHHHHHHHHHHHHhCCCEEEEcChhhcCCHHHH
Confidence            99999999999999999999999998888888 68899999999999999999999999999999999863   579999


Q ss_pred             HHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccC
Q 015325          274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV  353 (409)
Q Consensus       274 ~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~  353 (409)
                      ++.|+++++|++.++|+++..|..... ....+++||.+++|||++++++.++|.+.+++.+++|.||+||++..++...
T Consensus      1802 ~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~ 1880 (3956)
T PRK12467       1802 IQLIERQQVTTLHFVPSMLQQLLQMDE-QVEHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWT 1880 (3956)
T ss_pred             HHHHHHcCCeEEECCHHHHHHHHhhcc-ccccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEe
Confidence            999999999999999999999987422 2345789999999999999999999999998889999999999987665432


Q ss_pred             CC---CCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          354 GP---DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       354 ~~---~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ..   .......++|+|+++++++|+| ++++++|.|..|||+|+|+++++||+|+|.
T Consensus      1881 ~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~ 1937 (3956)
T PRK12467       1881 CRRKDLEGRDSVPIGQPIANLSTYILD-ASLNPVPIGVAGELYLGGVGLARGYLNRPA 1937 (3956)
T ss_pred             ccccccccCCCCCcccccCCCEEEEEC-CCCCCCCCCCceEEEeccccccccccCChh
Confidence            21   1122356899999999999999 899999999999999999999999999874

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.7e-48  Score=388.79  Aligned_cols=356  Identities=21%  Similarity=0.310  Sum_probs=280.2

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCC-------CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSV-------TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI  110 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~  110 (409)
                      +|+.+++.++++++    |+++|+++.+       ....+||+||.++++++|++|.+ . +++||+|+++++|++++++
T Consensus        34 ~~~~~~~~~~~~~~----~~~~a~~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~-~~~gd~V~l~~~n~~e~~~  107 (612)
T PRK12476         34 TTLISLIERNIANV----GDTVAYRYLDHSHSAAGCAVELTWTQLGVRLRAVGARLQQ-V-AGPGDRVAILAPQGIDYVA  107 (612)
T ss_pred             CcHHHHHHHHHHhC----CCceEEEEEccCCCCCCcceEEeHHHHHHHHHHHHHHHHH-h-cCCCCEEEEECCCChhHHH
Confidence            78999998888888    9999998631       12489999999999999999998 5 9999999999999999999


Q ss_pred             HHHHHHHhCCeEccC-CCCCC--HHHHHHHHhhcCCeEEEEcCchHHHHhhc----C----CeEEEeCCCcchhhhcccC
Q 015325          111 LYFSLLSLGVIISPA-NPVNT--ESEISRQIQLSNPVIAFATSSVVHKLAKL----K----HRTILIDSPEFDSMTMSWN  179 (409)
Q Consensus       111 ~~~A~~~~G~~~v~l-~~~~~--~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~  179 (409)
                      +++||+++|++++|+ ++..+  .+++.+++++++++++|++.+....+...    .    ..++.++.  +.   ....
T Consensus       108 ~~lA~~~aG~v~vpl~~~~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~---~~~~  182 (612)
T PRK12476        108 GFFAAIKAGTIAVPLFAPELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDA--IP---DSAG  182 (612)
T ss_pred             HHHHHHHcCceeEecCCCCcchhHHHHHHHHHhCCCCEEEEcHHHHHHHHHHHhhcccccCceEEEecc--cc---cccc
Confidence            999999999999999 57766  78999999999999999987665543221    1    12222221  10   0000


Q ss_pred             CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCC-CCCCCEEEEeCchhhHHhHHHHHHHHHh
Q 015325          180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK-RVSPAVMLFTMPYFHIYGLFFCFRAAAL  258 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~-~~~~d~~l~~~p~~~~~g~~~~~~~l~~  258 (409)
                      .  ........++++++|+|||||||.||||++||+++...+......+ . +.++++.++.+|++|.+|+...+.++..
T Consensus       183 ~--~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~  259 (612)
T PRK12476        183 E--SFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSI-DLLDRNTHGVSWLPLYHDMGLSMIGFPAVY  259 (612)
T ss_pred             c--cccCCCCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHh-ccCCCCceEEEeCCcccccchHHHHHHHhc
Confidence            0  1111234568999999999999999999999999987766655555 4 6788999999999999999655666666


Q ss_pred             CCeEEEecC--C--CHHHHHHHHH--HhcceeEeechHHHHHHHhCCC----CCCCCCCCcceeeecCCCCCHHHHHHHH
Q 015325          259 METAVVMQR--F--DLKMMLKAVE--EFRVTHAAVTPPIVVAMSKGGS----TDGYDLSSLETVACGAAPLGKDTIMAFA  328 (409)
Q Consensus       259 G~~~v~~~~--~--~~~~~~~~i~--~~~~t~l~~~p~~l~~l~~~~~----~~~~~l~~Lr~v~~~G~~~~~~~~~~~~  328 (409)
                      |+++++...  +  ++..+++.++  ++++|.+.++|+++..++....    ....++++|| +++||+++++++.++|+
T Consensus       260 gg~~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~  338 (612)
T PRK12476        260 GGHSTLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFN  338 (612)
T ss_pred             CCeEEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHH
Confidence            666666542  3  8899999995  5899999999999887776421    1344678999 99999999999999999


Q ss_pred             HhCC-----CCceecccCcccccceecccCCCC-------------------------CCCCCCccccccCCceEEEecC
Q 015325          329 SKFP-----KVVLVQAYGLTESTAGVFRTVGPD-------------------------ECRRWGSTGRLSAGLEAKIVDP  378 (409)
Q Consensus       329 ~~~~-----~~~i~~~yG~tE~~~~~~~~~~~~-------------------------~~~~~~s~G~p~~~~~v~i~d~  378 (409)
                      +.|+     ...+++.||+||++..++......                         .....+++|+|++|++++|+|+
T Consensus       339 ~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~  418 (612)
T PRK12476        339 KAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDP  418 (612)
T ss_pred             HHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeC
Confidence            9872     345999999999876544321110                         0012357899999999999995


Q ss_pred             CCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          379 ETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       379 ~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ++|++++.|+.|||+++|++++.||||+|.
T Consensus       419 ~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~  448 (612)
T PRK12476        419 DTGAELPDGEVGEIWLHGDNIGRGYWGRPE  448 (612)
T ss_pred             CCCcCCCCCCEEEEEEcCCcccccccCChH
Confidence            559999999999999999999999999874

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.3e-48  Score=384.60  Aligned_cols=357  Identities=17%  Similarity=0.194  Sum_probs=274.6

Q ss_pred             CC-HHHHHhhccCCCCCCCCCCcEEEeCCCC--ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           38 IS-AVDYVSSLRATLPWRDDDTVALINSVTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        38 ~~-~~~~l~~~~~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      || +.+.|.+.+.++    |+++|+++.+.+  +++||+||.++++++|+.|++ .  ++|++|+++++|+++++++++|
T Consensus         1 ~~~~~~~l~~~~~~~----~~~~a~~~~~~~~~~~~ty~el~~~~~~lA~~L~~-~--~~g~~V~l~~~~~~e~~~~~la   73 (525)
T PRK05851          1 MNELAAALSDAMTAS----GRDLVVLDRESGLWRRHPWPEVHGRAENVAARLLD-R--DRPGAVGLVGEPTVELVAAIQG   73 (525)
T ss_pred             CchHHHHHHHHhcCC----CCceEEeCCCCCcceeecHHHHHHHHHHHHHHHHh-c--CCCCeEEEEcCCCHHHHHHHHH
Confidence            45 788898998888    999999987433  789999999999999999998 6  8999999999999999999999


Q ss_pred             HHHhCCeEccCCCC-------CCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCccccccc
Q 015325          115 LLSLGVIISPANPV-------NTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRA  187 (409)
Q Consensus       115 ~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                      |+++|+++++++..       ...+++.++++.++++++|++.+....+......+. +.  ++........   .....
T Consensus        74 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~---~~~~~  147 (525)
T PRK05851         74 AWLAGAAVSILPGPVRGADDGRWADATLTRFAGIGVRTVLSHGSHLERLRAVDSSVT-VH--DLATAAHTNR---SASLT  147 (525)
T ss_pred             HHHcCCCCcCCCCCCCccchhhHHHHHHHHHHhcCCCEEEeCHHHHHHHHHhhcccc-cc--cccccccccc---cccCC
Confidence            99999986544321       123455677899999999998776554432211111 11  1111100000   00111


Q ss_pred             ccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCC-CCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325          188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV-SPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ  266 (409)
Q Consensus       188 ~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~-~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~  266 (409)
                      ...++++++|+|||||||.||||++||+++...+......+ +.. .+|++++..|++|.+++..++.++..|+++++.+
T Consensus       148 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~~d~~l~~~pl~h~~g~~~~~~~l~~G~~~~~~~  226 (525)
T PRK05851        148 PPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-GLDAATDVGCSWLPLYHDMGLAFLLTAALAGAPLWLAP  226 (525)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-CCCCCCCeEEEcCCCccCccHHHHHHHHHcCCeEEEcC
Confidence            24568999999999999999999999999998888877777 566 8999999999999999988899999999999986


Q ss_pred             C--C--CHHHHHHHHHHhcceeEeechHHHHHHHhCCC-CCCCCCCCcceeeecCCCCCHHHHHHHHHh---C--CCCce
Q 015325          267 R--F--DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS-TDGYDLSSLETVACGAAPLGKDTIMAFASK---F--PKVVL  336 (409)
Q Consensus       267 ~--~--~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~-~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~---~--~~~~i  336 (409)
                      .  +  ++..+++.++++++|++...|.++..+.+... ....++++||.+++||+++++++.++|.+.   +  +...+
T Consensus       227 ~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~  306 (525)
T PRK05851        227 TTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAA  306 (525)
T ss_pred             HHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhc
Confidence            2  3  67889999999999988655554555443221 223457899999999999999999999875   3  22459


Q ss_pred             ecccCcccccceecccCCCC-------------CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCcccccc
Q 015325          337 VQAYGLTESTAGVFRTVGPD-------------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGI  403 (409)
Q Consensus       337 ~~~yG~tE~~~~~~~~~~~~-------------~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY  403 (409)
                      ++.||+||++..++......             .....+++|+|++|++++|+|++.+.+++.|+.|||+++|++++.||
T Consensus       307 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY  386 (525)
T PRK05851        307 APSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGY  386 (525)
T ss_pred             ccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhcc
Confidence            99999999976554321100             11234689999999999999955556799999999999999999999


Q ss_pred             CCCCC
Q 015325          404 FLPHF  408 (409)
Q Consensus       404 ~~~~~  408 (409)
                      |+++.
T Consensus       387 ~~~~~  391 (525)
T PRK05851        387 LGQAP  391 (525)
T ss_pred             ccCCc
Confidence            99863

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=4.6e-48  Score=379.36  Aligned_cols=355  Identities=19%  Similarity=0.267  Sum_probs=299.1

Q ss_pred             CHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHh
Q 015325           39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL  118 (409)
Q Consensus        39 ~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~  118 (409)
                      |+.+.|...+..+    |+++|+.+.  +.++||+||.+++.++|+.|.+ .|+++|++|+++++|+.+++++++||+++
T Consensus         1 ~~~~~l~~~a~~~----p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~g~~~~~~V~i~~~~~~~~~~~~la~~~~   73 (502)
T TIGR01734         1 KLIEAIQAFAETY----PQTIAYRYQ--GQELTYQQLKEQSDRLAAFIQK-RILPKKSPIIVYGHMEPHMLVAFLGSIKS   73 (502)
T ss_pred             CHHHHHHHHHHHC----CCceEEEcC--CcEEeHHHHHHHHHHHHHHHHH-hCCCCCCeEEEEeCCCHHHHHHHHHHHHh
Confidence            4678888888888    999999887  7899999999999999999999 99999999999999999999999999999


Q ss_pred             CCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEEE
Q 015325          119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIM  198 (409)
Q Consensus       119 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~  198 (409)
                      |++++|+++.++.+++.++++..++++++++.+.......  ...+.++.  ..........  ........+++.++++
T Consensus        74 G~~~v~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~il  147 (502)
T TIGR01734        74 GHAYIPVDTSIPSERIEMIIEAAGPELVIHTAELSIDAVG--TQIITLSA--LEQAETSGGP--VSFDHAVKGDDNYYII  147 (502)
T ss_pred             CCEEeCCCCcChHHHHHHHHHhcCCCEEEecccccccccC--CceEEchH--hhhhhhhcCC--ccccccCCCCCeEEEE
Confidence            9999999999999999999999999999998765433321  12222211  1111111110  1112234578899999


Q ss_pred             cCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHHHHH
Q 015325          199 YSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMMLK  275 (409)
Q Consensus       199 ~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~  275 (409)
                      |||||||.||+|.++|+++..........+ .....++++...|++|..++..++.++..|+++++.+.   .++..+++
T Consensus       148 ~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~  226 (502)
T TIGR01734       148 YTSGSTGNPKGVQISHDNLVSFTNWMLADF-PLSEGKQFLNQAPFSFDLSVMDLYPCLASGGTLHCLDKDITNNFKLLFE  226 (502)
T ss_pred             ECCCCCCCCCEEEEecHHHHHHHHHHHHhC-CCCCCceEEeecCceechhHHHHHHHHHCCCEEEEcCHHHhcCHHHHHH
Confidence            999999999999999999998888877777 68889999999999999999889999999999999865   58899999


Q ss_pred             HHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCC
Q 015325          276 AVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP  355 (409)
Q Consensus       276 ~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~  355 (409)
                      .+.++++|.+.++|++++.++.........++++|.++++|++++.++.+++.+.++++++++.||+||+++.++.....
T Consensus       227 ~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~  306 (502)
T TIGR01734       227 ELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKIT  306 (502)
T ss_pred             HHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEcc
Confidence            99999999999999999888766544555678999999999999999999999999999999999999987655432211


Q ss_pred             ---CCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          356 ---DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       356 ---~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                         .......++|+|+++++++|+| ++++++++|+.|||+++|++++.||++++.
T Consensus       307 ~~~~~~~~~~~vg~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~  361 (502)
T TIGR01734       307 QEILDQYPRLPIGFAKPDMNLFIMD-EEGEPLPEGEKGEIVIVGPSVSKGYLNNPE  361 (502)
T ss_pred             ccccccCCccccccccCCCEEEEEC-CCCCCCCCCCeeEEEEccccccccccCCcc
Confidence               1123345799999999999999 789999999999999999999999998764

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.1e-48  Score=415.54  Aligned_cols=363  Identities=24%  Similarity=0.308  Sum_probs=302.4

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      ..++.+.+.+.++++    |+++|+++. .++++||+||.++++++|+.|++  ++++||+|+++++|+++++++++||+
T Consensus       614 ~~~l~~~~~~~a~~~----p~~~a~~~~-~~~~~Ty~el~~~~~~~a~~L~~--~~~~g~~V~i~~~n~~~~~~~~la~~  686 (1146)
T PRK08633        614 LPPLAEAWIDTAKRN----WSRLAVADS-TGGELSYGKALTGALALARLLKR--ELKDEENVGILLPPSVAGALANLALL  686 (1146)
T ss_pred             CCCHHHHHHHHHHhc----CCCcEEEcC-CCCcCcHHHHHHHHHHHHHHHHH--hCCCCCeEEEECCCchHHHHHHHHHH
Confidence            367888888888888    999999974 35799999999999999999987  48999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhh------c--CCeEEEeCCC-----c---chhhhcccCC
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK------L--KHRTILIDSP-----E---FDSMTMSWNS  180 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~------~--~~~~~~~~~~-----~---~~~~~~~~~~  180 (409)
                      ++|++++|+++..+.+++.++++++++++++++++....+.+      .  ..+++..+..     .   +.........
T Consensus       687 ~~G~v~v~l~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  766 (1146)
T PRK08633        687 LAGKVPVNLNYTASEAALKSAIEQAQIKTVITSRKFLEKLKNKGFDLELPENVKVIYLEDLKAKISKVDKLTALLAARLL  766 (1146)
T ss_pred             HcCCEEEEeCCCcCHHHHHHHHHHcCCCEEEEcHHHHHHHhccCCchhcccCceEEEeehhccccchhHHHHHHHHhccC
Confidence            999999999999999999999999999999998876665542      1  1122222210     0   1100000000


Q ss_pred             cc----cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHH
Q 015325          181 KH----ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRA  255 (409)
Q Consensus       181 ~~----~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~  255 (409)
                      ..    ........++|+++++|||||||.||+|.+||+++..........+ ...++|++++.+|++|.+++ ..++.+
T Consensus       767 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~  845 (1146)
T PRK08633        767 PARLLKRLYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-NLRNDDVILSSLPFFHSFGLTVTLWLP  845 (1146)
T ss_pred             CHHHHHhhccCCCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-CCCCCCEEEEcCcHHHHHhHHHHHHHH
Confidence            00    0001344678999999999999999999999999998888877777 68889999999999999999 558899


Q ss_pred             HHhCCeEEEec-CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCC
Q 015325          256 AALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKV  334 (409)
Q Consensus       256 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~  334 (409)
                      +..|+++++.+ .+++..+++.++++++|++.++|++++.+.+.....+.+++++|.+++||+++++++.++|++.+ ++
T Consensus       846 l~~g~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~-g~  924 (1146)
T PRK08633        846 LLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKF-GI  924 (1146)
T ss_pred             HHCCCEEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHh-CC
Confidence            99999999876 47899999999999999999999999999987655566789999999999999999999999999 89


Q ss_pred             ceecccCcccccceecccCCCC--------CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCC
Q 015325          335 VLVQAYGLTESTAGVFRTVGPD--------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLP  406 (409)
Q Consensus       335 ~i~~~yG~tE~~~~~~~~~~~~--------~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~  406 (409)
                      ++++.||+||+++.++......        ...+.+++|+|+||++++|+|+++++++++|+.|||+++|++++.|||++
T Consensus       925 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~ 1004 (1146)
T PRK08633        925 RILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGD 1004 (1146)
T ss_pred             CeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCC
Confidence            9999999999987665422111        12346789999999999999988999999999999999999999999998


Q ss_pred             CC
Q 015325          407 HF  408 (409)
Q Consensus       407 ~~  408 (409)
                      |.
T Consensus      1005 ~~ 1006 (1146)
T PRK08633       1005 PE 1006 (1146)
T ss_pred             cc
Confidence            75

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=3.1e-48  Score=394.62  Aligned_cols=352  Identities=18%  Similarity=0.249  Sum_probs=284.7

Q ss_pred             CCCHHHHHhhccCCCCCCCCC-CcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDD-TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL  115 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~  115 (409)
                      ..|+.+.|.+.++++    |+ ++|+.+. ..+.+||+||.++++++|++|++ . +++||+|+++++|++++++++|||
T Consensus       203 ~~t~~~~l~~~~~~~----p~~~~a~~~~-~~~~~Ty~el~~~~~~lA~~L~~-~-~~~gd~Val~~~n~~e~~~~~lA~  275 (718)
T PRK08043        203 RETLYEALLSAQYRY----GAGKPCIEDV-NFTPDSYRKLLKKTLFVGRILEK-Y-SVEGERIGLMLPNATISAAVIFGA  275 (718)
T ss_pred             CCCHHHHHHHHHHHh----CCCCcceEcC-CCCcccHHHHHHHHHHHHHHHHH-h-cCCCceEEEEcCCcHHHHHHHHHH
Confidence            478899999999888    87 5788753 23789999999999999999998 6 599999999999999999999999


Q ss_pred             HHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHh--hc-----CCeEEEeCCC-c---chhh-hc-ccCCcc
Q 015325          116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA--KL-----KHRTILIDSP-E---FDSM-TM-SWNSKH  182 (409)
Q Consensus       116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~--~~-----~~~~~~~~~~-~---~~~~-~~-~~~~~~  182 (409)
                      +++|++++|+++.++.+++.+++++++++++|++.+......  ..     ....+.++.. .   +... .. ......
T Consensus       276 ~~~G~v~vpl~~~~~~~~l~~~l~~s~~~~vi~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  355 (718)
T PRK08043        276 SLRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDVTTADKLWIFAHLLMP  355 (718)
T ss_pred             HHcCCcccccccCcCHHHHHHHHHHcCCcEEEEcHHHHhhccCCChhhhhccccEEEhhhhhhhcchhHHHHHHHHHhCC
Confidence            999999999999999999999999999999999876543211  00     1122222210 0   0000 00 000000


Q ss_pred             cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCe
Q 015325          183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMET  261 (409)
Q Consensus       183 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~  261 (409)
                      ........++|+++++|||||||.||||++||+++...+......+ ++..+|++++.+|++|.+++ ..++.++..|++
T Consensus       356 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~~  434 (718)
T PRK08043        356 RLAQVKQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-DFTPNDRFMSALPLFHSFGLTVGLFTPLLTGAE  434 (718)
T ss_pred             ccccCCCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-CCCccCeEEEcCcchhhhhhHHHHHHHHHcCCE
Confidence            0011234568999999999999999999999999998887777766 68899999999999999998 668899999999


Q ss_pred             EEEecC-CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceeccc
Q 015325          262 AVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY  340 (409)
Q Consensus       262 ~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  340 (409)
                      +++.+. +++..+++.++++++|++.++|+++..+.+..  ...++++||.+++||+++++++.++|++.| ++++++.|
T Consensus       435 vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~-g~~l~~~Y  511 (718)
T PRK08043        435 VFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKF-GLRILEGY  511 (718)
T ss_pred             EEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHc-CCCeeccc
Confidence            998874 57788899999999999999999998887642  234678999999999999999999999998 89999999


Q ss_pred             CcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCC
Q 015325          341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLP  406 (409)
Q Consensus       341 G~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~  406 (409)
                      |+||++..++..  .......+++|+|+||++++|+| ++|.    ++.|||+++|++++.|||++
T Consensus       512 G~TE~~~~~~~~--~~~~~~~~svG~p~pg~~~~i~d-~~~~----~~~Gel~v~g~~v~~GY~~~  570 (718)
T PRK08043        512 GVTECAPVVSIN--VPMAAKPGTVGRILPGMDARLLS-VPGI----EQGGRLQLKGPNIMNGYLRV  570 (718)
T ss_pred             CcccccceEEec--CCcccCCCCCCCcCCCCeeEEec-CCCC----CCceEEEEecCCccccccCC
Confidence            999998766542  22334678999999999999999 5543    56799999999999999984

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=9.7e-48  Score=379.21  Aligned_cols=362  Identities=25%  Similarity=0.355  Sum_probs=296.1

Q ss_pred             CCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHH
Q 015325           36 APISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL  115 (409)
Q Consensus        36 ~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~  115 (409)
                      .++|+.++|...+.++    |+++|++++  +..+||.||.++++++|+.|++ .|+++|++|+++++|+.+++++++||
T Consensus         5 ~~~~~~~~~~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~-~g~~~g~~v~i~~~~~~~~~~~~lA~   77 (528)
T PRK07470          5 RVMNLAHFLRQAARRF----PDRIALVWG--DRSWTWREIDARVDALAAALAA-RGVRKGDRILVHSRNCNQMFESMFAA   77 (528)
T ss_pred             cCCCHHHHHHHHHHHC----CCceEEEEC--CccccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHH
Confidence            3489999999999988    999999987  7899999999999999999999 99999999999999999999999999


Q ss_pred             HHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----C-CeEEEeCC----CcchhhhcccCCccccc
Q 015325          116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----K-HRTILIDS----PEFDSMTMSWNSKHELD  185 (409)
Q Consensus       116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~-~~~~~~~~----~~~~~~~~~~~~~~~~~  185 (409)
                      +++|++++++++..+.+++.++++.+++++++++++........     . ...+.+..    ..+.++....... ...
T Consensus        78 ~~~G~~~v~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  156 (528)
T PRK07470         78 FRLGAVWVPTNFRQTPDEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVARHLGA-RVA  156 (528)
T ss_pred             HhCCeEEEecCccCCHHHHHHHHHhcCceEEEEcchhHHHHHHHHhhCCcCceEEEeCCCcccccHHHHHhcCCCC-CCC
Confidence            99999999999999999999999999999999998765443321     1 12222221    1233332221110 112


Q ss_pred             ccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc-cCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEE
Q 015325          186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA-SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV  264 (409)
Q Consensus       186 ~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~  264 (409)
                      .....++++++++|||||||.||+|.++|+++...+..... ...+....|+++...|++|.+++..++ .+..|++.++
T Consensus       157 ~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~-~~~~g~~~~~  235 (528)
T PRK07470        157 NAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMAFVITNHLADLMPGTTEQDASLVVAPLSHGAGIHQLC-QVARGAATVL  235 (528)
T ss_pred             cccCCCCCeEEEEeCCCCCCCCcEEEEehhhHHHHHHHHHHHhccCCCcccEEEEeccchhHHHHHHHH-HHhcCceEEE
Confidence            23346688999999999999999999999998765443222 222457889999999999999986544 5777888777


Q ss_pred             ec--CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCc
Q 015325          265 MQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL  342 (409)
Q Consensus       265 ~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  342 (409)
                      .+  .+++..+++.|+++++|++.++|++++.+.+.+......++++|.+++||+++++.+.+++.+.+ +..+++.||+
T Consensus       236 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-g~~~~~~YG~  314 (528)
T PRK07470        236 LPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKL-GKVLVQYFGL  314 (528)
T ss_pred             ecccCcCHHHHHHHHHhcCCeEEechHHHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHh-CcHHHHhCCC
Confidence            64  47899999999999999999999999999987765566788999999999999999999999988 7889999999


Q ss_pred             ccccceecccCCC------CCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          343 TESTAGVFRTVGP------DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       343 tE~~~~~~~~~~~------~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ||+++.++.....      ......+++|+|+++++++|+| ++|++++.|+.|||+++|+.++.|||+++.
T Consensus       315 TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~  385 (528)
T PRK07470        315 GEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQD-DEGRELPPGETGEICVIGPAVFAGYYNNPE  385 (528)
T ss_pred             cccCCceeecchhhccccccccceeeccCcccCCcEEEEEC-CCCCCCCCCCceEEEEeCCccchhhcCCHH
Confidence            9998765432110      0123457899999999999999 789999999999999999999999998753

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=1.7e-47  Score=384.59  Aligned_cols=360  Identities=19%  Similarity=0.167  Sum_probs=279.9

Q ss_pred             CCCCCHHHHHhhccCCCCCCCCCCcEEEeCCC---CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHH
Q 015325           35 DAPISAVDYVSSLRATLPWRDDDTVALINSVT---GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPIL  111 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~---~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~  111 (409)
                      +..+|+++.+.++   .    ++++|++..+.   .+++||+||.+++.++|+.|++ .|+++||+|+++++|+++++++
T Consensus        84 ~~~~n~~~~~~~~---~----~~~~a~~~~~~~~~~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~GdrV~i~~~n~~e~~~~  155 (652)
T TIGR01217        84 GARLNYAENLLRA---A----GTEPALLYVDETHEPAPVTWAELRRQVASLAAALRA-LGVRPGDRVSGYLPNIPQAVVA  155 (652)
T ss_pred             CCeeeHHHHHhcc---C----CCCeEEEEECCCCCeeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHH
Confidence            5568999988874   3    57788876422   2589999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH---------HHHh----hcC-C-eEEEeCC--------
Q 015325          112 YFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV---------HKLA----KLK-H-RTILIDS--------  168 (409)
Q Consensus       112 ~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~----~~~-~-~~~~~~~--------  168 (409)
                      ++||+++|++++|+++.++.+++.+++++++++++|+++...         ..+.    .+. . .++.++.        
T Consensus       156 ~lA~~~~Gav~vp~~~~~~~~~l~~~l~~~~~k~li~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  235 (652)
T TIGR01217       156 MLATASVGAIWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVHIPYLGPRETEA  235 (652)
T ss_pred             HHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCcEEEEccccccCCcccchHHHHHHHHhcCCCccEEEEEeCCCCccccc
Confidence            999999999999999999999999999999999999976431         1111    111 1 1222211        


Q ss_pred             ------CcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHH-HHHhhccCCCCCCCCEEEEeC
Q 015325          169 ------PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA-VASSFASSPKRVSPAVMLFTM  241 (409)
Q Consensus       169 ------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~-~~~~~~~~~~~~~~d~~l~~~  241 (409)
                            ..++++....... .........+++++|+|||||||.||||+++|++++.. .......+ .+.++|++++..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~~~~~  313 (652)
T TIGR01217       236 PKIDGALDLEDFTAAAQAA-ELVFEQLPFDHPLWILFSSGTTGLPKCIVHSAGGTLVQHLKEHGLHC-DLGPGDRLFYYT  313 (652)
T ss_pred             ccccCcccHHHHHhcccCC-CCCceecCCCCCEEEEEcCCCCCCCCeEEecccHHHHHHHHHHHhcc-CCCCCcEEEEeC
Confidence                  1123332221100 11122345689999999999999999999999986543 33444445 678899999999


Q ss_pred             chhhHHhHHHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceeeec
Q 015325          242 PYFHIYGLFFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACG  315 (409)
Q Consensus       242 p~~~~~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~~~  315 (409)
                      |+.|..+. .++.++..|+++++.++    .++..++++++++++|++..+|.++..+.+...  ....++++||.+++|
T Consensus       314 ~~~~~~~~-~~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~g  392 (652)
T TIGR01217       314 TTGWMMWN-WLVSGLATGATLVLYDGSPGFPATNVLWDIAERTGATLFGTSAKYVMACRKAGVHPARTHDLSALQCVAST  392 (652)
T ss_pred             CcchhhhH-HHHHHHhcCcEEEEECCCCCCCCchHHHHHHHHhCCeEEecCHHHHHHHHhcCCCccccCChhheeEEEee
Confidence            99997543 45689999999999853    378999999999999999888888777765421  234578999999999


Q ss_pred             CCCCCHHHHHHHHHhCC-CCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEE
Q 015325          316 AAPLGKDTIMAFASKFP-KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSI  394 (409)
Q Consensus       316 G~~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v  394 (409)
                      |+++++++.+++.+.++ +..+.+.||+||+++.... .........+++|.|.+|++++|+| ++|+++ +|+.|||++
T Consensus       393 Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~-~~~~~~~~~g~~g~p~~g~~v~ivd-~~g~~~-~g~~GEl~v  469 (652)
T TIGR01217       393 GSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAG-ANPTLPVHIGEIQAPGLGTAVQSWD-PEGKPV-TGEVGELVC  469 (652)
T ss_pred             cCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccC-CCCCCCCcCCccCCCcCCCceEEEC-CCCCCC-CCCccEEEE
Confidence            99999999999999883 4567889999997543332 1222234467899999999999999 889998 599999999


Q ss_pred             ecC--ccccccCCCCC
Q 015325          395 RGP--TIMKGIFLPHF  408 (409)
Q Consensus       395 ~g~--~v~~gY~~~~~  408 (409)
                      +||  +++.|||+++.
T Consensus       470 ~gp~p~~~~gy~~~~~  485 (652)
T TIGR01217       470 TNPMPSMPIRFWNDPD  485 (652)
T ss_pred             ecCCCccccceeCCCc
Confidence            996  68999999875

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.7e-47  Score=380.11  Aligned_cols=364  Identities=24%  Similarity=0.307  Sum_probs=299.8

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|.+.++++    |+++|+++.+.++.+||+||.++++++|++|.+ .|+++|++|+++++|++++++++|||++
T Consensus        18 ~~l~~~l~~~~~~~----p~~~a~~~~~~~~~~Ty~~l~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~~a~~~   92 (558)
T PRK12583         18 QTIGDAFDATVARF----PDREALVVRHQALRYTWRQLADAVDRLARGLLA-LGVQPGDRVGIWAPNCAEWLLTQFATAR   92 (558)
T ss_pred             CcHHHHHHHHHHHC----CCCeEEEecCCCcEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence            68999999999998    999999986557899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH-----HHHh----hc--------------CC-eEEEeCC-----
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLA----KL--------------KH-RTILIDS-----  168 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~----~~--------------~~-~~~~~~~-----  168 (409)
                      +|++++++++..+.+++.+++++++++++++++...     ..+.    .+              .. ..+....     
T Consensus        93 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (558)
T PRK12583         93 IGAILVNINPAYRASELEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPAPPPG  172 (558)
T ss_pred             hCCEEEecCCCCCHHHHHHHHHhcCCcEEEEeccccccchhHHHHHHhhhhccccccccccccCCcceEEEEecCCCCcc
Confidence            999999999999999999999999999999876421     1111    00              00 0111111     


Q ss_pred             -CcchhhhcccCCc----ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCch
Q 015325          169 -PEFDSMTMSWNSK----HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY  243 (409)
Q Consensus       169 -~~~~~~~~~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~  243 (409)
                       ..|++........    .........++++++++|||||||.||+|.++|+++...+......+ +...+|++++..|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~-~~~~~d~~~~~~p~  251 (558)
T PRK12583        173 FLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL-GLTEHDRLCVPVPL  251 (558)
T ss_pred             ccchHhhhhcccccccccccccccccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh-CCCCCCeEEEecCc
Confidence             0122221111100    00011233568899999999999999999999999988888777777 68889999999999


Q ss_pred             hhHHhH-HHHHHHHHhCCeEEEec-CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCH
Q 015325          244 FHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK  321 (409)
Q Consensus       244 ~~~~g~-~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~  321 (409)
                      +|.+|. ..++.++..|+++++.. .+++..++..++++++|++.++|+++..++........++++||.+++||+++++
T Consensus       252 ~~~~g~~~~~~~~l~~g~~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~  331 (558)
T PRK12583        252 YHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPI  331 (558)
T ss_pred             hhhhhHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCH
Confidence            999998 77888999999998754 5789999999999999999999999998887766556678999999999999999


Q ss_pred             HHHHHHHHhCCCCceecccCcccccceecccCC-CCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccc
Q 015325          322 DTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIM  400 (409)
Q Consensus       322 ~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~  400 (409)
                      ++.+++.+.+++..+++.||+||++...+.... ........++|+|++++.++|+|+ ++++++.|+.|||+++|+.++
T Consensus       332 ~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~-~~~~~~~g~~Gel~v~g~~~~  410 (558)
T PRK12583        332 EVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDP-DGATVPRGEIGELCTRGYSVM  410 (558)
T ss_pred             HHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECC-CCCCCCCCCeeEEEEEeCccc
Confidence            999999999977789999999999876654221 112234678999999999999995 599999999999999999999


Q ss_pred             cccCCCCC
Q 015325          401 KGIFLPHF  408 (409)
Q Consensus       401 ~gY~~~~~  408 (409)
                      .||++++.
T Consensus       411 ~gy~~~~~  418 (558)
T PRK12583        411 KGYWNNPE  418 (558)
T ss_pred             hhhcCChH
Confidence            99998863

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-47  Score=377.16  Aligned_cols=351  Identities=18%  Similarity=0.167  Sum_probs=285.9

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCC-CCCCEEEEEcCCCCchHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv-~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      -++.+.|.+++  .    |+++|+++.  +..+||.||.++++++|..|.+ .|+ ++|++|+++++|+++++++++||+
T Consensus         3 ~~~~~~l~~~~--~----p~~~Al~~~--~~~lTy~el~~~~~~la~~L~~-~g~~~~~~~V~i~~~n~~~~v~~~lA~~   73 (540)
T PRK13388          3 DTIAQLLRDRA--G----DDTIAVRYG--DRTWTWREVLAEAAARAAALIA-LADPDRPLHVGVLLGNTPEMLFWLAAAA   73 (540)
T ss_pred             hhHHHHHHhhc--c----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECCCCcHHHHHHHHHH
Confidence            46777887654  4    899999987  7899999999999999999999 999 799999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc---CCeEEEeCCCcchhhhcccCCcccccccccCCCC
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL---KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSD  193 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (409)
                      ++|++++|++|..+.+++.++++++++++++++++....+.+.   ..+++..+...+.++......  ........+++
T Consensus        74 ~~Ga~~v~l~p~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~  151 (540)
T PRK13388         74 LGGYVLVGLNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGLDLPGVRVLDVDTPAYAELVAAAGA--LTPHREVDAMD  151 (540)
T ss_pred             hCCCEEEEecccCChHHHHHHHHhcCCCEEEEChhhhHHHHhhcccCceEEEccchhhhhhhccccC--cCCCCCCCCCC
Confidence            9999999999999999999999999999999988766555433   234444443334443322111  11112346789


Q ss_pred             EEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHH
Q 015325          194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKM  272 (409)
Q Consensus       194 ~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~  272 (409)
                      +++++|||||||.||+|.++|+++..........+ +...+|+++..+|++|.+++ ..++.++..|+++++.+.+++..
T Consensus       152 ~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~  230 (540)
T PRK13388        152 PFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-GLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSASG  230 (540)
T ss_pred             eEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-CCCCCCEEEEeeCchhhcchHHHHHHHHHcCcEEEECCCCCHHH
Confidence            99999999999999999999999988887777777 68899999999999999988 45567899999999988889999


Q ss_pred             HHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325          273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT  352 (409)
Q Consensus       273 ~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~  352 (409)
                      +++.++++++|++..+|..+..++..+........++|.+ + |+++++...++|.+.+ +.++++.||+||++..++..
T Consensus       231 ~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~~-~-G~~~~~~~~~~~~~~~-~~~l~~~YG~tE~~~~~~~~  307 (540)
T PRK13388        231 FLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRVA-F-GNEASPRDIAEFSRRF-GCQVEDGYGSSEGAVIVVRE  307 (540)
T ss_pred             HHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEEE-E-CCCCCHHHHHHHHHHh-CCceecccccccccceeecC
Confidence            9999999999999999999999987654332233466643 3 6667888999999998 89999999999998665431


Q ss_pred             CCCCCCCCCCccccccCCceEE-----------EecCCCCCCC-CCCCcceEEEe-cCccccccCCCCC
Q 015325          353 VGPDECRRWGSTGRLSAGLEAK-----------IVDPETGDSL-PPGKEGELSIR-GPTIMKGIFLPHF  408 (409)
Q Consensus       353 ~~~~~~~~~~s~G~p~~~~~v~-----------i~d~~~g~~~-~~g~~Gei~v~-g~~v~~gY~~~~~  408 (409)
                          .....+++|+|++|+++.           ++| ++|+++ ++|+.|||+++ |++++.|||++|.
T Consensus       308 ----~~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d-~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~  371 (540)
T PRK13388        308 ----PGTPPGSIGRGAPGVAIYNPETLTECAVARFD-AHGALLNADEAIGELVNTAGAGFFEGYYNNPE  371 (540)
T ss_pred             ----CCCCCCCCCCCCCCcEEEcCCCCccccceecc-CccccccCCCcceEEEEecCCcccccccCChH
Confidence                123467899999997753           455 566666 45679999998 9999999999864

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-47  Score=379.78  Aligned_cols=363  Identities=21%  Similarity=0.330  Sum_probs=293.9

Q ss_pred             CCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      ..+.++.+.|...++++    |+++|+++.  +..+||.||.++++++|+.|.+ .|+++||+|+++++|+++++++++|
T Consensus        20 ~~~~~i~~~l~~~a~~~----p~~~a~~~~--~~~lTy~~l~~~~~~~a~~L~~-~gi~~gd~V~i~~~n~~~~~~~~la   92 (557)
T PRK07059         20 SQYPSLADLLEESFRQY----ADRPAFICM--GKAITYGELDELSRALAAWLQS-RGLAKGARVAIMMPNVLQYPVAIAA   92 (557)
T ss_pred             CCCCCHHHHHHHHHHHc----CCCceEEEc--CceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHH
Confidence            33468999999999988    999999987  7899999999999999999999 9999999999999999999999999


Q ss_pred             HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCeEE-EeCC---------------------
Q 015325          115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTI-LIDS---------------------  168 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~-~~~~---------------------  168 (409)
                      |+++|++++|+++..+.+++.+++++++++++++++.....+.+.    ....+ ....                     
T Consensus        93 ~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (557)
T PRK07059         93 VLRAGYVVVNVNPLYTPRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRRVKKM  172 (557)
T ss_pred             HHhcCeEEeccCcccCHHHHHHHHHccCceEEEEchhhHHHHHHhhcccCCceeEEeccccccccccccccccccccccc
Confidence            999999999999999999999999999999999987655443321    11111 1000                     


Q ss_pred             ---------CcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCC---C---CCC
Q 015325          169 ---------PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP---K---RVS  233 (409)
Q Consensus       169 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~---~---~~~  233 (409)
                               ..+++....... .........++++++++|||||||.||+|+++|++++..+......+.   .   ...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~  251 (557)
T PRK07059        173 VPAWSLPGHVRFNDALAEGAR-QTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPD  251 (557)
T ss_pred             ccccCCCCcccHHHHhhccCC-CCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCC
Confidence                     001111111110 011123345789999999999999999999999999876544332220   1   123


Q ss_pred             CCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecC-CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcce
Q 015325          234 PAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLET  311 (409)
Q Consensus       234 ~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~  311 (409)
                      ...+++..|++|.+++ ...+.++..|++.++.+. .++..+++.++++++|.+.++|.++..+.........+++++|.
T Consensus       252 ~~~~~~~~pl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~  331 (557)
T PRK07059        252 QLNFVCALPLYHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIV  331 (557)
T ss_pred             CcEEEEeCCcHHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheE
Confidence            4578889999999887 567788888988777754 58899999999999999999999999999886655667889999


Q ss_pred             eeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcce
Q 015325          312 VACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE  391 (409)
Q Consensus       312 v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Ge  391 (409)
                      ++.||+++++.+.++|.+.+ ++++++.||+||++..++... ......++++|+|+++++++|+| ++|++++.|+.||
T Consensus       332 ~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~vG~p~~g~~v~i~d-~~~~~~~~g~~Ge  408 (557)
T PRK07059        332 ANGGGMAVQRPVAERWLEMT-GCPITEGYGLSETSPVATCNP-VDATEFSGTIGLPLPSTEVSIRD-DDGNDLPLGEPGE  408 (557)
T ss_pred             EEeccccCCHHHHHHHHHHh-CCCeeeccccccccchhhcCC-CCCCCcCCcccCccCCcEEEEEC-CCCCCCCCCCceE
Confidence            99999999999999999988 899999999999987655432 22234467899999999999999 8899999999999


Q ss_pred             EEEecCccccccCCCCC
Q 015325          392 LSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       392 i~v~g~~v~~gY~~~~~  408 (409)
                      |+++|++++.|||+++.
T Consensus       409 l~v~g~~~~~gY~~~~~  425 (557)
T PRK07059        409 ICIRGPQVMAGYWNRPD  425 (557)
T ss_pred             EEEeCCccchhhhcCHH
Confidence            99999999999998763

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.6e-47  Score=374.06  Aligned_cols=339  Identities=23%  Similarity=0.347  Sum_probs=281.0

Q ss_pred             CCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHH
Q 015325           56 DDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS  135 (409)
Q Consensus        56 p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~  135 (409)
                      ||++|+.+..++..+||.||.++++++|+.|++ .|+++|++|+++++|++++++++|||+++|++++|+++..+.+++.
T Consensus         9 p~~~a~~~~~~~~~~ty~~l~~~v~~~a~~l~~-~g~~~~~~v~i~~~~~~~~~~~~la~~~~G~~~v~~~~~~~~~~~~   87 (488)
T PRK09088          9 PQRLAAVDLALGRRWTYAELDALVGRLAAVLRR-RGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRLSASELD   87 (488)
T ss_pred             CCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCeEEEeeCccCCHHHHH
Confidence            999999874447899999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccH
Q 015325          136 RQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR  215 (409)
Q Consensus       136 ~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~  215 (409)
                      +++++++++++++++......    ...+     .++.+.................+++++++|||||||.||+|.+||+
T Consensus        88 ~~~~~~~~~~ii~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~  158 (488)
T PRK09088         88 ALLQDAEPRLLLGDDAVAAGR----TDVE-----DLAAFIASADALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSER  158 (488)
T ss_pred             HHHHhCCCCEEEEcchhhccc----cccc-----chhhhhhhccccccccCCCCCCCCceEEEeCCCCCCCCcEEEEehH
Confidence            999999999999987543211    1111     1111111111000111223456789999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHH--HhcceeEeechHHH
Q 015325          216 NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVE--EFRVTHAAVTPPIV  292 (409)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~--~~~~t~l~~~p~~l  292 (409)
                      ++...+....... .....|++++.+|++|.+++ ..++.++..|+++++.+.+++..++..+.  ++++|++.++|+++
T Consensus       159 ~l~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~  237 (488)
T PRK09088        159 NLQQTAHNFGVLG-RVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFCVPQMA  237 (488)
T ss_pred             HHHHHHHHHHHhh-CCCCCcEEEEecchHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHH
Confidence            9987777666555 57789999999999999998 66788899999999998889999999886  48999999999999


Q ss_pred             HHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC-CCCCCCCCccccccCCc
Q 015325          293 VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGL  371 (409)
Q Consensus       293 ~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~s~G~p~~~~  371 (409)
                      ..+.+........+++||.+++||++++....+++.+.  ++++++.||+||++........ .......+++|.|+|++
T Consensus       238 ~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~--g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~  315 (488)
T PRK09088        238 QAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD--GIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTV  315 (488)
T ss_pred             HHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh--CCceeeeecccccccccccCCCcccccccCCccccCCCCc
Confidence            99988765555567899999999999999999888865  8899999999999865432111 11123567899999999


Q ss_pred             eEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       372 ~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +++|+| +++++++.|+.|||+|+|++++.||++++.
T Consensus       316 ~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~  351 (488)
T PRK09088        316 QTRVVD-DQGNDCPAGVPGELLLRGPNLSPGYWRRPQ  351 (488)
T ss_pred             EEEEEC-CCCCCCcCCCceEEEEECCccchhhcCChh
Confidence            999999 789999999999999999999999999864

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.1e-47  Score=378.58  Aligned_cols=382  Identities=24%  Similarity=0.305  Sum_probs=303.4

Q ss_pred             CCeeeecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCE
Q 015325           18 ATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDT   97 (409)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~   97 (409)
                      +.+.|....|...+. +....++.+.|.+.+..+    |+++|+.+.  ++.+||.||.+++.++|+.|.+ .|+++|++
T Consensus        14 ~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~a~~~----p~~~al~~~--~~~~Ty~~l~~~~~~la~~L~~-~g~~~g~~   85 (567)
T PRK06178         14 QQAAWPAGIPREPEY-PHGERPLTEYLRAWARER----PQRPAIIFY--GHVITYAELDELSDRFAALLRQ-RGVGAGDR   85 (567)
T ss_pred             HHhhCCcCCCCCCCC-CcCcccHHHHHHHHHHHC----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCE
Confidence            344566445544332 244489999999999888    999999987  7899999999999999999999 99999999


Q ss_pred             EEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCeE-EEeCCCc--
Q 015325           98 AFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRT-ILIDSPE--  170 (409)
Q Consensus        98 V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~-~~~~~~~--  170 (409)
                      |+++++|+.+++++++||+++|++++|++|..+.+++.+++++++++++++++...+.+.+.    .... +.....+  
T Consensus        86 V~i~~~n~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~ii~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~  165 (567)
T PRK06178         86 VAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHELSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVL  165 (567)
T ss_pred             EEEECCCCcHHHHHHHHHHHhCeEEeecCCCCCHHHHHHHHHhcCCcEEEEccchHHHHHHhhccCCcceEEEecccccc
Confidence            99999999999999999999999999999999999999999999999999998776554432    1111 1111000  


Q ss_pred             ---------------------chhhhcccCC-cccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC
Q 015325          171 ---------------------FDSMTMSWNS-KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS  228 (409)
Q Consensus       171 ---------------------~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~  228 (409)
                                           +.++...... ..........++++++++|||||||.||+|++||++++..........
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~  245 (567)
T PRK06178        166 PAEPTLPLPDSLRAPRLAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVA  245 (567)
T ss_pred             ccccccccccccccccccccccccHHHHhhccccccccCCCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHh
Confidence                                 0011110000 001111234568899999999999999999999999887655443332


Q ss_pred             CCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCC
Q 015325          229 PKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS  307 (409)
Q Consensus       229 ~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~  307 (409)
                      ......|++++.+|++|.+|+ ..++.++..|+++++.+++++..++..++++++|.+.++|..+..+.+.......+++
T Consensus       246 ~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~  325 (567)
T PRK06178        246 VVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLS  325 (567)
T ss_pred             ccCCCCcEEEEecchHHHHHHHHHHHHHHHcCceEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcc
Confidence            257889999999999999998 6788899999999999999999999999999999999999999999887655556677


Q ss_pred             Ccceeee--cCCCCCHHHHHHHHHhCCCCcee-cccCcccccceecccCCCC-----CCCCCCccccccCCceEEEecCC
Q 015325          308 SLETVAC--GAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPD-----ECRRWGSTGRLSAGLEAKIVDPE  379 (409)
Q Consensus       308 ~Lr~v~~--~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~-----~~~~~~s~G~p~~~~~v~i~d~~  379 (409)
                      ++|.+..  .|+.+++++.+.|++.+ +..++ +.||+||++...+......     ....++++|+|+||++++|+|++
T Consensus       326 ~l~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~  404 (567)
T PRK06178        326 SLRQVRVVSFVKKLNPDYRQRWRALT-GSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFE  404 (567)
T ss_pred             hheeeeeccccccCCHHHHHHHHHHh-CCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCC
Confidence            8888654  45899999999999998 55555 4799999876543321111     12345679999999999999988


Q ss_pred             CCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          380 TGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       380 ~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ++++++.|+.|||+++|++++.|||+++.
T Consensus       405 ~~~~~~~g~~Gel~v~g~~v~~gY~~~~~  433 (567)
T PRK06178        405 TGELLPLGAEGEIVVRTPSLLKGYWNKPE  433 (567)
T ss_pred             CCCcCCCCCceEEEEECCcccccccCChh
Confidence            99999999999999999999999999863

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.4e-49  Score=344.16  Aligned_cols=361  Identities=23%  Similarity=0.276  Sum_probs=307.5

Q ss_pred             CCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      ++..++.+.|.++++++    ||++|++++  ++++||+||.++++++|..|++ .|+++||+|.+.+||..++++++||
T Consensus        25 W~d~~l~d~L~~~A~~~----pdriAv~d~--~~~~sY~eLdqr~d~LAa~l~~-lGi~~Gd~vlvQLpN~~ef~~~~FA   97 (542)
T COG1021          25 WQDRTLTDILTDHAARY----PDRIAVIDG--ERRLSYAELDQRADRLAAGLRR-LGIKPGDTVLVQLPNVAEFYITFFA   97 (542)
T ss_pred             ccCCcHHHHHHHHHhhc----CCceEEecC--cccccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCchHHHHHHHHH
Confidence            45589999999999999    999999998  7889999999999999999999 9999999999999999999999999


Q ss_pred             HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH--------HHHh--hcCCeEEEeC-CCc-----chhhhccc
Q 015325          115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA--KLKHRTILID-SPE-----FDSMTMSW  178 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~--~~~~~~~~~~-~~~-----~~~~~~~~  178 (409)
                      ++++|+++|..=|.-...++.++.+...++.+|.+....        ..+.  ...++.+.+. ..+     +..+....
T Consensus        98 LlrlGv~PVlALpsHr~~Ei~~f~~~~e~~~~i~~~~~~gFd~~~~ar~~~a~~~tlr~v~v~ge~~~~~~~~~~~~~~a  177 (542)
T COG1021          98 LLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFARELVAKHPTLRHVIVAGEAEHPSVLEAALCHPA  177 (542)
T ss_pred             HHHcCcchhhccchhhHHHHHHHHHhhcchheeechhhcccCcHHHHHHHHhhCCcceEEEEccCCCCcchhhhhhhCcc
Confidence            999999999999999999999999999999999875321        1111  1123444333 211     11111111


Q ss_pred             CCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH--HHHHHHH
Q 015325          179 NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL--FFCFRAA  256 (409)
Q Consensus       179 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~--~~~~~~l  256 (409)
                      .  ......+.++++++++..+.||||.||.|..+|+.+..+...-.+.+ ++++.++.++.+|..|-+-+  -+.+..+
T Consensus       178 ~--~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ysv~aSaEiC-~~~~~tvyL~~LP~AHNfplssPG~LGv~  254 (542)
T COG1021         178 G--LFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC-GFDQQTVYLCALPAAHNFPLSSPGALGVF  254 (542)
T ss_pred             c--cCCcCCCCCCCceEEEEecCCCCCCCccccccccceeeeeeehhhhh-CcCccceEEEecccccCCCCCCcchhhee
Confidence            1  01223455678899999999999999999999999988888888888 79999999999999998888  4789999


Q ss_pred             HhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCce
Q 015325          257 ALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL  336 (409)
Q Consensus       257 ~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i  336 (409)
                      ++|+++|+.+..+|+....+|+++++|+..++|.+...|+...+....+++|||++=+||+.+++.+.+++...+ ++.+
T Consensus       255 ~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~l-gC~L  333 (542)
T COG1021         255 LAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLASLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL-GCQL  333 (542)
T ss_pred             eeccEEEECCCCCHHHHHHHHHHhccceEEeccHHHHHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhh-CchH
Confidence            999999999999999999999999999999999999999999888888999999999999999999999999999 9999


Q ss_pred             ecccCcccccceecccCCCCCCCCCCcccccc-CCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       337 ~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~-~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      -+.|||.|.-...+. ..++......+-|+|+ |.=+++|+| ++|++|++||+|+|..+||-.++|||+.|+
T Consensus       334 QQVFGMAEGLvnyTR-LDDp~E~i~~TQGrPlsP~DEvrvvD-~dg~pv~pGE~G~LltRGPYTirGYyrap~  404 (542)
T COG1021         334 QQVFGMAEGLVNYTR-LDDPPEIIIHTQGRPLSPDDEVRVVD-ADGNPVAPGEVGELLTRGPYTIRGYYRAPE  404 (542)
T ss_pred             HHHhhhhhhhhcccc-cCCchHheeecCCCcCCCcceeEEec-CCCCCCCCCCcceeeecCCeeeeeeccCch
Confidence            999999995433333 2223333446789997 666899999 999999999999999999999999998775

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=4.9e-48  Score=452.29  Aligned_cols=356  Identities=17%  Similarity=0.229  Sum_probs=302.7

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|.++++++    |+++|+++.  ++.+||+||.++++++|+.|++ .|+++|++|+++++++++++++++||++
T Consensus      2003 ~~~~~~~~~~a~~~----p~~~A~~~~--~~~lTy~eL~~~a~~lA~~L~~-~gv~~g~~V~l~~~~s~~~~~~~lAil~ 2075 (5163)
T PRK12316       2003 PGVHQRIAEQAARA----PEAIAVVFG--DQHLSYAELDSRANRLAHRLRA-RGVGPEVRVAIAAERSFELVVALLAVLK 2075 (5163)
T ss_pred             CCHHHHHHHHHHhC----CCCeEEEcC--CCeEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence            58999999999999    999999987  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-CCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA  196 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (409)
                      +|++++|++|.++.+++.++++++++++++++.+....+... ....+.++..  ... .....  ........+++++|
T Consensus      2076 aGa~~vpld~~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~--~~~~~~~~~~~~a~ 2150 (5163)
T PRK12316       2076 AGGAYVPLDPNYPAERLAYMLEDSGAALLLTQRHLLERLPLPAGVARLPLDRD--AEW-ADYPD--TAPAVQLAGENLAY 2150 (5163)
T ss_pred             hceEEeecCCCCCHHHHHHHHHhcCCCEEEeChhhhhhcccccccceEeccch--hhh-hccCc--cCCCCCCCCCCeEE
Confidence            999999999999999999999999999999998765544321 2222222211  111 11000  11223456899999


Q ss_pred             EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC--CCHHHHH
Q 015325          197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR--FDLKMML  274 (409)
Q Consensus       197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~  274 (409)
                      |+|||||||.||||+++|+++.+.+......+ ++.+.|+++...|++|..+++.++.++..|+++++.+.  +++..++
T Consensus      2151 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~L~~G~~~~~~~~~~~~~~~~~ 2229 (5163)
T PRK12316       2151 VIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-ELSPADCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLY 2229 (5163)
T ss_pred             EEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-CCCCcceEEEecCchHHHHHHHHHHHHhCCCEEEeCCcccCCHHHHH
Confidence            99999999999999999999999998888888 68999999999999999888999999999999977753  6899999


Q ss_pred             HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325          275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG  354 (409)
Q Consensus       275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  354 (409)
                      +.|+++++|++.++|+++..+.+...... ...+||.+++|||+++++++++|.+.+++.++++.||+||++..++....
T Consensus      2230 ~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~ 2308 (5163)
T PRK12316       2230 DEMERHGVTILDFPPVYLQQLAEHAERDG-RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEAVVTPLLWKC 2308 (5163)
T ss_pred             HHHHHcCCeEEEcChHHHHHHHhhhhccc-CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhheeeeeeeec
Confidence            99999999999999999999987643322 23589999999999999999999999888999999999999876554222


Q ss_pred             CCCC---CCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          355 PDEC---RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       355 ~~~~---~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ....   ....++|+|+++++++|+| ++++++|.|+.|||+|+|+++++||||+|.
T Consensus      2309 ~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~ 2364 (5163)
T PRK12316       2309 RPQDPCGAAYVPIGRALGNRRAYILD-ADLNLLAPGMAGELYLGGEGLARGYLNRPG 2364 (5163)
T ss_pred             ccccccCCCcCCcccccCCCEEEEEC-CCCCCCCCCCeeEEEecchhhcccccCChh
Confidence            1111   1235799999999999999 889999999999999999999999999874

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.6e-47  Score=375.86  Aligned_cols=359  Identities=23%  Similarity=0.325  Sum_probs=299.8

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .|+.+.|.+.++++    |+++|++++  ++.+||.||.++++++|+.|.+ .|+++|++|+++++|+++++++++||++
T Consensus        12 ~~~~~~~~~~~~~~----~~~~a~~~~--~~~~Ty~~l~~~~~~~a~~L~~-~gv~~~~~V~i~~~~~~~~~~~~la~~~   84 (524)
T PRK06188         12 ATYGHLLVSALKRY----PDRPALVLG--DTRLTYGQLADRISRYIQAFEA-LGLGTGDAVALLSLNRPEVLMAIGAAQL   84 (524)
T ss_pred             ccHHHHHHHHHHHC----CCCeEEEEC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            68999999999998    999999998  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCc-hHHHHhhc-----CC-eEEEeCCC-cchhhhcccCCc-ccccccc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSS-VVHKLAKL-----KH-RTILIDSP-EFDSMTMSWNSK-HELDRAK  188 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~-~~~~~~~~-----~~-~~~~~~~~-~~~~~~~~~~~~-~~~~~~~  188 (409)
                      +|++++++++..+.+++.++++.++++.+++++. ......+.     .. .++.++.. ....+....... .......
T Consensus        85 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (524)
T PRK06188         85 AGLRRTALHPLGSLDDHAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVLTLGPVPDGVDLLAAAAKFGPAPLVAA  164 (524)
T ss_pred             hCCEEEecccCCCHHHHHHHHHhcCceEEEEecchhhHHHHHHhhhcCCceEEEEeCCccchhhHHHhhhccCccccccc
Confidence            9999999999999999999999999999999876 22222211     11 12222211 111111110000 0111122


Q ss_pred             cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCC
Q 015325          189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF  268 (409)
Q Consensus       189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~  268 (409)
                      ..++++++++|||||||.||+|.++|+++..........+ ....++++++..|++|.+++ .++.++..|+++++.+.+
T Consensus       165 ~~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~pl~~~~g~-~~~~~l~~G~~~~~~~~~  242 (524)
T PRK06188        165 ALPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-EWPADPRFLMCTPLSHAGGA-FFLPTLLRGGTVIVLAKF  242 (524)
T ss_pred             CCCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-CCCcCcEEEEecCchhhhhH-HHHHHHHcCCEEEEcCCC
Confidence            3456699999999999999999999999998888877777 68899999999999998887 467889999999999999


Q ss_pred             CHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccce
Q 015325          269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG  348 (409)
Q Consensus       269 ~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~  348 (409)
                      ++..+++.++++++|++.++|+++..+++........++++|.+++||++++++..+.+.+.+ +..+++.||+||++..
T Consensus       243 ~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~  321 (524)
T PRK06188        243 DPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERF-GPIFAQYYGQTEAPMV  321 (524)
T ss_pred             CHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHh-CchhhheeCccccCCc
Confidence            999999999999999999999999999988766666789999999999999999999999988 7889999999999765


Q ss_pred             ecccCCCC----CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCC
Q 015325          349 VFRTVGPD----ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       349 ~~~~~~~~----~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~  407 (409)
                      ++......    ......++|+|++|++++|+| +++++++.|+.|||+++|+.++.||++++
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~  383 (524)
T PRK06188        322 ITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLD-EDGREVAQGEVGEICVRGPLVMDGYWNRP  383 (524)
T ss_pred             eeecCchhccccccccCCccccccCCcEEEEEc-CCCCCCCCCCeeEEEEECcchhhhhcCCh
Confidence            54422111    223557899999999999999 77999999999999999999999999876

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=7.4e-48  Score=418.32  Aligned_cols=362  Identities=14%  Similarity=0.154  Sum_probs=292.8

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeC-------CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINS-------VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI  110 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~-------~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~  110 (409)
                      .++.+.|.++++++    |+++|+++.       ..++++||+||.++++++|++|++ .|+++|++|+|+++|++++++
T Consensus       236 ~~l~~~~~~~a~~~----pd~~A~~~~~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~-~gv~~g~~V~i~~~~~~~~i~  310 (1389)
T TIGR03443       236 GAIHDIFADNAEKH----PDRTCVVETPSFLDPSSKTRSFTYKQINEASNILAHYLLK-TGIKRGDVVMIYAYRGVDLVV  310 (1389)
T ss_pred             CcHHHHHHHHHHhC----CCCeEEEeccccccccCCCceeeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEecCCHHHHH
Confidence            57999999999998    999999863       135789999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCch---HHHHhh-----c----CCeEEEeCCC-cc------
Q 015325          111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---VHKLAK-----L----KHRTILIDSP-EF------  171 (409)
Q Consensus       111 ~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~---~~~~~~-----~----~~~~~~~~~~-~~------  171 (409)
                      +++||+++|++++|++|.++.+++.++++.++++++++....   ...+..     .    ....+.+... ..      
T Consensus       311 ~~lA~l~~G~~~vpldp~~p~~~~~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (1389)
T TIGR03443       311 AVMGVLKAGATFSVIDPAYPPARQTIYLSVAKPRALIVIEKAGTLDQLVRDYIDKELELRTEIPALALQDDGSLVGGSLE  390 (1389)
T ss_pred             HHHHHHhhCcEEeccCCCCcHHHHHHHHHhcCCCEEEEeccccccchhhhhhhhcccccccccceEEecccccccccccc
Confidence            999999999999999999999999999999999999987542   111110     0    0111111100 00      


Q ss_pred             ---hhhhcccCCcc-cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHH
Q 015325          172 ---DSMTMSWNSKH-ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY  247 (409)
Q Consensus       172 ---~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  247 (409)
                         .+......... ........++++++|+|||||||.||||+++|+++.+.+.+....+ ++.+.|+++...|++|..
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~~~~~d~  469 (1389)
T TIGR03443       391 GGETDVLAPYQALKDTPTGVVVGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-GLSENDKFTMLSGIAHDP  469 (1389)
T ss_pred             cccccccccccccccCCCCCcCCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-CCCCCCEEEEecCceecc
Confidence               00000000000 0111224578999999999999999999999999999888888777 688999999999999998


Q ss_pred             hHHHHHHHHHhCCeEEEecC---CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHH
Q 015325          248 GLFFCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI  324 (409)
Q Consensus       248 g~~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~  324 (409)
                      +++.++.++..|+++++.+.   .++..+++.|+++++|++.++|+++..|....   ...+++||.+++||+++++.+.
T Consensus       470 ~~~~i~~~L~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~  546 (1389)
T TIGR03443       470 IQRDMFTPLFLGAQLLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGDILTKRDC  546 (1389)
T ss_pred             hHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecccCCHHHH
Confidence            88899999999999999864   36889999999999999999999999987643   2347899999999999999999


Q ss_pred             HHHHHhCCCCceecccCcccccceecccCCCCC---------CCCCCccccccCCceEEEecCC-CCCCCCCCCcceEEE
Q 015325          325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPE-TGDSLPPGKEGELSI  394 (409)
Q Consensus       325 ~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~---------~~~~~s~G~p~~~~~v~i~d~~-~g~~~~~g~~Gei~v  394 (409)
                      +++++.++++++++.||+||++..++.......         .....++|+|+++++++|+|++ .+++++.|+.|||+|
T Consensus       547 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i  626 (1389)
T TIGR03443       547 LRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYV  626 (1389)
T ss_pred             HHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEe
Confidence            999998889999999999999876554221111         1124678999999999999943 358899999999999


Q ss_pred             ecCccccccCCCCC
Q 015325          395 RGPTIMKGIFLPHF  408 (409)
Q Consensus       395 ~g~~v~~gY~~~~~  408 (409)
                      +||++++||||+|+
T Consensus       627 ~G~~v~~GY~~~p~  640 (1389)
T TIGR03443       627 RAGGLAEGYLGLPE  640 (1389)
T ss_pred             cccccchhcCCChh
Confidence            99999999999874

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=3.4e-47  Score=375.52  Aligned_cols=359  Identities=23%  Similarity=0.290  Sum_probs=294.9

Q ss_pred             CCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      ++..++.+.|.+.+.      |+++|+++.  ++.+||.||.++++++|+.|.+ .|+++|++|+++++|+.+++++++|
T Consensus        22 ~~~~~~~~~~~~~a~------p~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~-~g~~~g~~V~v~~~n~~~~~~~~la   92 (536)
T PRK10946         22 WQDLPLTDILTRHAA------SDAIAVICG--ERQFSYRELNQASDNLACSLRR-QGIKPGDTALVQLGNVAEFYITFFA   92 (536)
T ss_pred             ecCccHHHHHHHhhC------CCCeEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCChHHHHHHHHH
Confidence            334789999977665      799999997  7899999999999999999999 9999999999999999999999999


Q ss_pred             HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCch--------HHHHhhc--CCeEEEeCC----CcchhhhcccCC
Q 015325          115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV--------VHKLAKL--KHRTILIDS----PEFDSMTMSWNS  180 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--------~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~  180 (409)
                      |+++|++++++.+.....++.++++.++++++++++..        ...+...  ....+....    ..+.........
T Consensus        93 ~~~~G~v~v~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (536)
T PRK10946         93 LLKLGVAPVNALFSHQRSELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEHSLDDAINHPAE  172 (536)
T ss_pred             HHHcCeEEecCCccccHHHHHHHHhhcCCCEEEEeccccccchHHHHHHHHhhCCCceEEEEecCCCCccHHHHhhCccc
Confidence            99999998887777788899999999999999997642        1222111  122222221    122222222211


Q ss_pred             cccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHH--HHHHHHHh
Q 015325          181 KHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAAL  258 (409)
Q Consensus       181 ~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~--~~~~~l~~  258 (409)
                        ........++++++++|||||||.||+|++||+++...+......+ +..++|++++.+|++|.+++.  .++.++..
T Consensus       173 --~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~~~~~~~~~~~l~~  249 (536)
T PRK10946        173 --DFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-GFTPQTRYLCALPAAHNYPMSSPGALGVFLA  249 (536)
T ss_pred             --ccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCceEEEecCccccccchhhhHHHHhhc
Confidence              1112234568899999999999999999999999999888877777 688899999999999988873  57889999


Q ss_pred             CCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCC--CCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCce
Q 015325          259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL  336 (409)
Q Consensus       259 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i  336 (409)
                      |+++++.+.+++..++..++++++|++.++|.++..+++..  ......+++||.+++||+++++.+.++|.+.+ ++++
T Consensus       250 g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~-g~~~  328 (536)
T PRK10946        250 GGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAEL-GCQL  328 (536)
T ss_pred             CcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCCHHHHHHHHHhc-CCeE
Confidence            99999998889999999999999999999999999998752  22334568999999999999999999999998 8999


Q ss_pred             ecccCcccccceecccCCCCCCCCCCcccccc-CCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          337 VQAYGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       337 ~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~-~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ++.||+||+...... ..........++|+|+ |++.++|+| ++|+++++|+.|||+++|+.++.|||+++.
T Consensus       329 ~~~YG~tE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~v~i~d-~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~  399 (536)
T PRK10946        329 QQVFGMAEGLVNYTR-LDDSDERIFTTQGRPMSPDDEVWVAD-ADGNPLPQGEVGRLMTRGPYTFRGYYKSPQ  399 (536)
T ss_pred             EEeecccccceeeec-CCCccccccccCCcccCCCceEEEEC-CCCCCCCCCCccEEEEecCccchhhcCCcc
Confidence            999999997543332 1222234567899999 899999999 889999999999999999999999999874

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=5.7e-47  Score=376.27  Aligned_cols=379  Identities=23%  Similarity=0.307  Sum_probs=300.7

Q ss_pred             CeeeecCCCCCCCC--CCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhH-hccCCCCC
Q 015325           19 TKTFHSLRPPIDLP--PEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQ-NVTRLSKN   95 (409)
Q Consensus        19 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~-~~~gv~~g   95 (409)
                      .+.|++++|+-..-  +.++..++.+.|...+.++    |+++|+++.  ++.+||+||.+++.++|+.|+ + .|+++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~a~~~~--~~~~Ty~el~~~~~~la~~L~~~-~g~~~g   76 (560)
T PRK08751          4 ARPWLQSYPAGVAAEIDLEQFRTVAEVFATSVAKF----ADRPAYHSF--GKTITYREADQLVEQFAAYLLGE-LQLKKG   76 (560)
T ss_pred             ccchhhhcCCCCCCccCCcCCCcHHHHHHHHHHhC----CCCceEEEC--CceeeHHHHHHHHHHHHHHHHHH-hCCCCC
Confidence            45566666553222  2244468999999999888    999999987  789999999999999999996 5 899999


Q ss_pred             CEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhh----cCCe-EEEeCCC-
Q 015325           96 DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHR-TILIDSP-  169 (409)
Q Consensus        96 ~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~-~~~~~~~-  169 (409)
                      ++|+++++|+.+++++++||+++|+++++++|..+.+++.+++++++++++++++.....+.+    .... ++..+.. 
T Consensus        77 ~~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~p~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (560)
T PRK08751         77 DRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRELKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGD  156 (560)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCeEEeccCccCCHHHHHHHHHhcCCeEEEEcchhHHHHHHHhhCCCccEEEEechhh
Confidence            999999999999999999999999999999999999999999999999999998766544332    1111 1111100 


Q ss_pred             ------------------------------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHH
Q 015325          170 ------------------------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA  219 (409)
Q Consensus       170 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~  219 (409)
                                                    .+.+....... .........++++++++|||||||.||+|.+||+++..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~  235 (560)
T PRK08751        157 MLGFPKAALVNFVVKYVKKLVPEYRINGAIRFREALALGRK-HSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVA  235 (560)
T ss_pred             hcccccchhhhhhhhhhhccccccCCCccccHHHHHhccCC-CCCCCCCCCcccEEEEEcCCCCCCCCCEEEEccHHHHH
Confidence                                          00111110000 01112234568899999999999999999999999987


Q ss_pred             HHHHhhccCC---CCCC-CCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEec-CCCHHHHHHHHHHhcceeEeechHHHH
Q 015325          220 AVASSFASSP---KRVS-PAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVV  293 (409)
Q Consensus       220 ~~~~~~~~~~---~~~~-~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~  293 (409)
                      .+......+.   .... .+++++..|++|.+++ ...+.++..|++.++.. .+++..++..++++++|.+.++|.++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~  315 (560)
T PRK08751        236 NMQQAHQWLAGTGKLEEGCEVVITALPLYHIFALTANGLVFMKIGGCNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFN  315 (560)
T ss_pred             HHHHHHHhhccccccCCCCceEEEecChHHHHHHHHhhhhHhhccceEEEecCcCCHHHHHHHHHhcceeEecChHHHHH
Confidence            7766554431   1223 4677888999999988 45566777787776654 578999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceE
Q 015325          294 AMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEA  373 (409)
Q Consensus       294 ~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v  373 (409)
                      .+.+.......++++||.+++||+++++++.++|++.+ ++.+++.||+||++..++... .......+++|.|++++++
T Consensus       316 ~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~vG~~~~~~~v  393 (560)
T PRK08751        316 GLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVT-GLTLVEAYGLTETSPAACINP-LTLKEYNGSIGLPIPSTDA  393 (560)
T ss_pred             HHHcCcCcCCcchhhheeeeeCCCCCCHHHHHHHHHHh-CCeEEEeeccccCCCceeccc-ccccccCCCcCccCCCceE
Confidence            99987655566788999999999999999999999988 889999999999987655422 2223445789999999999


Q ss_pred             EEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          374 KIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       374 ~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +|+| ++|++++.|+.|||+++|+.++.|||+++.
T Consensus       394 ~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~  427 (560)
T PRK08751        394 CIKD-DAGTVLAIGEIGELCIKGPQVMKGYWKRPE  427 (560)
T ss_pred             EEEC-CCCCCCCCCCceEEEEecCccchhhcCChh
Confidence            9999 899999999999999999999999999864

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.2e-47  Score=446.00  Aligned_cols=354  Identities=21%  Similarity=0.299  Sum_probs=304.7

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|.++++++    |+++|++++  +.++||+||.++++++|+.|++ .|+++|++|+++++++.+++++++|+++
T Consensus      1131 ~~l~~~~~~~a~~~----p~~~Al~~~--~~~lTY~eL~~~~~~lA~~L~~-~gv~~g~~V~i~~~~s~~~iv~~lailk 1203 (4334)
T PRK05691       1131 AWLPELLNEQARQT----PERIALVWD--GGSLDYAELHAQANRLAHYLRD-KGVGPDVCVAIAAERSPQLLVGLLAILK 1203 (4334)
T ss_pred             CCHHHHHHHHHHhC----CCCeEEEEC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            57999999999999    999999987  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-CCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA  196 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (409)
                      +|++++|+++..+.+++.++++++++++++++......+... ....+..+......    ...  ........+++++|
T Consensus      1204 aG~~~vpld~~~p~~rl~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~a~ 1277 (4334)
T PRK05691       1204 AGGAYVPLDPDYPAERLAYMLADSGVELLLTQSHLLERLPQAEGVSAIALDSLHLDS----WPS--QAPGLHLHGDNLAY 1277 (4334)
T ss_pred             hCCEEEecCcCChHHHHHHHHHhcCCCEEEecchhhhhcccccCceEEeeccccccc----cCC--CCCCCCCCCCCeEE
Confidence            999999999999999999999999999999998765544332 11222222111110    000  11122345789999


Q ss_pred             EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec---CCCHHHH
Q 015325          197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ---RFDLKMM  273 (409)
Q Consensus       197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~---~~~~~~~  273 (409)
                      ++|||||||.||||+++|+++.+.+.+....+ .+.+++++++..|++|..+++.++.++..|+++++.+   ..++..+
T Consensus      1278 ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-~~~~~d~~l~~~~~~fd~s~~~~~~~L~~G~~l~i~~~~~~~~~~~l 1356 (4334)
T PRK05691       1278 VIYTSGSTGQPKGVGNTHAALAERLQWMQATY-ALDDSDVLMQKAPISFDVSVWECFWPLITGCRLVLAGPGEHRDPQRI 1356 (4334)
T ss_pred             EEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHhCCCEEEEcCccccCCHHHH
Confidence            99999999999999999999999988888877 6899999999999999999999999999999999985   3689999


Q ss_pred             HHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccC
Q 015325          274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV  353 (409)
Q Consensus       274 ~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~  353 (409)
                      ++.++++++|++.++|++++.+.+...  ...+++||.+++|||++++++.++|.+.+|+++++|.||+||++..++...
T Consensus      1357 ~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~ 1434 (4334)
T PRK05691       1357 AELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQ 1434 (4334)
T ss_pred             HHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeee
Confidence            999999999999999999999987543  235789999999999999999999999999999999999999987665432


Q ss_pred             CCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       354 ~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .........++|+|+++++++|+| +++++++.|+.|||+|+|+++++||+|+|.
T Consensus      1435 ~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~ 1488 (4334)
T PRK05691       1435 CQAEDGERSPIGRPLGNVLCRVLD-AELNLLPPGVAGELCIGGAGLARGYLGRPA 1488 (4334)
T ss_pred             cccccCCCCcccceeCCCEEEEEC-CCCCCCCCCCceEEEecCcccchhhcCCcc
Confidence            222334457899999999999999 889999999999999999999999999875

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-46  Score=370.63  Aligned_cols=351  Identities=24%  Similarity=0.273  Sum_probs=290.1

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhcc-CCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~-gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      .++.+.|...+.      ++++|++++  ++.+||.||.++++++|++|++ . |++++++|+++++|+++++++++||+
T Consensus         5 ~~~~~~l~~~a~------~~~~a~~~~--~~~~Ty~el~~~v~~lA~~L~~-~~~~~~~~~V~i~~~n~~~~~~~~lA~~   75 (529)
T PRK07867          5 PTVAELLLPLAE------DDDRGLYFE--DSFTSWREHIRGSAARAAALRA-RLDPTRPPHVGVLLDNTPEFSLLLGAAA   75 (529)
T ss_pred             ccHHHHHHHhcc------cCCceEEEC--CcEEeHHHHHHHHHHHHHHHHH-hhCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            678888877664      678999987  7899999999999999999998 6 89999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc--CCeEEEeCCCcchhhhcccCCcccccccccCCCCE
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL--KHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDV  194 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (409)
                      ++|++++|+++..+.+++.++++++++++++++++....+...  ...++.++...+.+.+...... ........++++
T Consensus        76 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~  154 (529)
T PRK07867         76 LSGIVPVGLNPTRRGAALARDIAHADCQLVLTESAHAELLDGLDPGVRVINVDSPAWADELAAHRDA-EPPFRVADPDDL  154 (529)
T ss_pred             hcCCEEEEecCCCChHHHHHHHHhCCCeEEEECHhHHHHHHhhccCceEEEeccccHHHHhcccCCC-CCCcccCCccce
Confidence            9999999999999999999999999999999998776655432  2334444433344433321111 112233567899


Q ss_pred             EEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHH
Q 015325          195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMM  273 (409)
Q Consensus       195 a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~  273 (409)
                      ++++|||||||.||+|++||+++..........+ +....|++++..|++|.+++ ..++.++..|+++++.+.+++..+
T Consensus       155 ~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~  233 (529)
T PRK07867        155 FMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-GLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSASGF  233 (529)
T ss_pred             EEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-CCCcccEEEEecchhHHHHHHHHHHHHHhcCceEEecCCCCHHHH
Confidence            9999999999999999999999988888777777 67889999999999999998 557778999999999988999999


Q ss_pred             HHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccC
Q 015325          274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV  353 (409)
Q Consensus       274 ~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~  353 (409)
                      +..++++++|++.++|+.+..++..........+++|. ++||+.+++. .++|.+.+ ++++++.||+||++..++.. 
T Consensus       234 ~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr~-~~gg~~~~~~-~~~~~~~~-g~~l~~~YG~TE~~~~~~~~-  309 (529)
T PRK07867        234 LPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRI-VYGNEGAPGD-IARFARRF-GCVVVDGFGSTEGGVAITRT-  309 (529)
T ss_pred             HHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceEE-EecCCCChHH-HHHHHHHh-CCcEEEeecccccccccccC-
Confidence            99999999999999999999988765433333467885 5688888776 46778888 89999999999997654431 


Q ss_pred             CCCCCCCCCccccccCCceEEEecCCCCCCCCCCC------------cceEEE-ecCccccccCCCCC
Q 015325          354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK------------EGELSI-RGPTIMKGIFLPHF  408 (409)
Q Consensus       354 ~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~------------~Gei~v-~g~~v~~gY~~~~~  408 (409)
                         .....+++|.|+++  ++++|++++++++.|+            .|||++ +|++++.|||+++.
T Consensus       310 ---~~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~  372 (529)
T PRK07867        310 ---PDTPPGALGPLPPG--VAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPE  372 (529)
T ss_pred             ---CCCCCCCcCCCCCC--EEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChH
Confidence               12345689999999  7888878899999998            999999 99999999999873

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=7.6e-47  Score=371.94  Aligned_cols=360  Identities=25%  Similarity=0.325  Sum_probs=293.4

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCC---CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVT---GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~---~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      .++.+++.+.++++    |+++|+++.+.   .+.+||.||.++++++|+.|.+ +|+++||+|+++++|+.+++++++|
T Consensus         7 ~~l~~~~~~~a~~~----p~~~a~~~~~~~~~~~~~ty~~l~~~v~~la~~L~~-~g~~~~~~v~i~~~n~~~~~~~~la   81 (517)
T PRK08008          7 QHLRQMWDDLADVY----GHKTALIFESSGGVVRRYSYLELNEEINRTANLFYS-LGIRKGDKVALHLDNCPEFIFCWFG   81 (517)
T ss_pred             ccHHHHHHHHHHHC----CCceEEEcccCCCccceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            57999999999998    99999997531   2689999999999999999998 9999999999999999999999999


Q ss_pred             HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc------CC-eEEEeCC--------CcchhhhcccC
Q 015325          115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KH-RTILIDS--------PEFDSMTMSWN  179 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~-~~~~~~~--------~~~~~~~~~~~  179 (409)
                      |+++|++++++++..+.+++.++++++++++++++.+....+.+.      .. .++..+.        ..+++......
T Consensus        82 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (517)
T PRK08008         82 LAKIGAIMVPINARLLREESAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQP  161 (517)
T ss_pred             HHHcCeEEEEcCcccCHHHHHHHHHhcCceEEEEecchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCC
Confidence            999999999999999999999999999999999998766554432      11 1222221        11222211111


Q ss_pred             CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHh
Q 015325          180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAAL  258 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~  258 (409)
                      .. ........++++++++|||||||.||+|+++|+++........... ....++++++.+|++|..+. ..++.++..
T Consensus       162 ~~-~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~  239 (517)
T PRK08008        162 AT-LCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQC-ALRDDDVYLTVMPAFHIDCQCTAAMAAFSA  239 (517)
T ss_pred             cc-ccccCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHhhhc-CCCCCCeEEEecCcHHHHHHHHHHHHHHhc
Confidence            00 1112234568899999999999999999999999986543333233 46788999999999998766 778999999


Q ss_pred             CCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325          259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ  338 (409)
Q Consensus       259 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  338 (409)
                      |+++++.+++++..+++.++++++|++.++|+++..+.............+|.+.+++ +++++...+|.+.+ ++++++
T Consensus       240 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~  317 (517)
T PRK08008        240 GATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMFYL-NLSDQEKDAFEERF-GVRLLT  317 (517)
T ss_pred             CcEEEEccccCHHHHHHHHHHcCCcEEechHHHHHHHHhCCCccccccccceeeEEec-CCCHHHHHHHHHHh-CCeEEe
Confidence            9999999999999999999999999999999999999876554434456788877754 78999999999988 899999


Q ss_pred             ccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEec---CccccccCCCCC
Q 015325          339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG---PTIMKGIFLPHF  408 (409)
Q Consensus       339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g---~~v~~gY~~~~~  408 (409)
                      .||+||+++.++... ........++|+|+++++++|+| ++|++++.|+.|||+++|   ++++.|||++++
T Consensus       318 ~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~g~~~~i~d-~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~  388 (517)
T PRK08008        318 SYGMTETIVGIIGDR-PGDKRRWPSIGRPGFCYEAEIRD-DHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPK  388 (517)
T ss_pred             eccccccccccccCC-ccccccCCccccCCCCcEEEEEC-CCCCCCCCCCcceEEEeCCCCcchhhhHhCChH
Confidence            999999986554422 23334567899999999999999 889999999999999998   689999999874

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=1.6e-46  Score=368.89  Aligned_cols=356  Identities=18%  Similarity=0.269  Sum_probs=292.3

Q ss_pred             CCHHHHHhhc--cCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHH
Q 015325           38 ISAVDYVSSL--RATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL  115 (409)
Q Consensus        38 ~~~~~~l~~~--~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~  115 (409)
                      +|.+.-+...  ++.+    ||++|++++  +..+||.||.++++++|++|.+ .|+++|++|+++++|+.+++++++||
T Consensus         3 ~~~~~~~~~~~~~~~~----p~~~a~~~~--~~~~ty~~l~~~~~~~a~~L~~-~g~~~g~~v~l~~~~~~~~~~~~~a~   75 (508)
T TIGR02262         3 YNAAEDLLDRNVVEGR----GGKTAFIDD--ISSLSYGELEAQVRRLGAALRR-LGVKREERVLLLMLDGVDFPIAFLGA   75 (508)
T ss_pred             chHHHHHHHHHHhccc----CCceEEEeC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHH
Confidence            4555444443  3456    999999987  7899999999999999999998 99999999999999999999999999


Q ss_pred             HHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----C-CeEEEeCCC-----cchhhhcccCCcccc
Q 015325          116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----K-HRTILIDSP-----EFDSMTMSWNSKHEL  184 (409)
Q Consensus       116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~-~~~~~~~~~-----~~~~~~~~~~~~~~~  184 (409)
                      +++|++++|+++..+.+++.++++.+++++++++......+.+.     . ..++..+..     .+.+.......  ..
T Consensus        76 ~~~G~~~v~l~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  153 (508)
T TIGR02262        76 IRAGIVPVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQLAELLATESE--QF  153 (508)
T ss_pred             HHcCcEEeeccCCCCHHHHHHHHHhcCCeEEEEchhhHHHHHHHHhcCCCccEEEEeCCCCcccccHHHHhhcCCC--cc
Confidence            99999999999999999999999999999999998765544321     1 112222211     12222111110  11


Q ss_pred             cccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHH-hhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeE
Q 015325          185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETA  262 (409)
Q Consensus       185 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~  262 (409)
                      ......++++++++|||||||.||+|.++|+++...+.. ....+ +.+.+|+++...|++|.+++ ..++.++..|+++
T Consensus       154 ~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~  232 (508)
T TIGR02262       154 KPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTL-GIREDDVVFSAAKLFFAYGLGNALTFPMSVGATT  232 (508)
T ss_pred             CCCCCCCCCcEEEEeCCCCCCCCcEEEEechhHHHHHHHHhHHhc-CCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceE
Confidence            122345688999999999999999999999999877655 33444 67889999999999999988 6678889999999


Q ss_pred             EEecC-CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccC
Q 015325          263 VVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG  341 (409)
Q Consensus       263 v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  341 (409)
                      ++.+. +++..+++.|+++++|.+.++|+++..+++....+.....++|.+++||+++++++.+.|++.| ++++++.||
T Consensus       233 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~v~~~YG  311 (508)
T TIGR02262       233 VLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARF-GVDIVDGIG  311 (508)
T ss_pred             EEeCCCCCHHHHHHHHHHHCCcEEecchHHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHh-CCchhhCcc
Confidence            88764 6899999999999999999999999988876544444567899999999999999999999999 899999999


Q ss_pred             cccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCC
Q 015325          342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       342 ~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~  407 (409)
                      +||++...+.  ........+++|+|++|++++|+| ++++++++|+.|||+++|++++.||++++
T Consensus       312 ~tE~~~~~~~--~~~~~~~~~~~G~~~~g~~v~i~d-~~~~~~~~g~~Gel~i~~~~~~~gY~~~~  374 (508)
T TIGR02262       312 STEMLHIFLS--NLPGDVRYGTSGKPVPGYRLRLVG-DGGQDVAAGEPGELLISGPSSATMYWNNR  374 (508)
T ss_pred             ccccCceeec--CCccCCCCCCcCCCCCCcEEEEEC-CCCCCCCCCCeeEEEEecCccccccCCCH
Confidence            9999875543  222233467899999999999999 89999999999999999999999999876

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.3e-47  Score=445.84  Aligned_cols=353  Identities=17%  Similarity=0.209  Sum_probs=301.9

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.+.++++++    |+++|+++.  +..+||+||.++++++|+.|++ .|+++|++|+|+++++.+++++++|+++
T Consensus      3720 ~~~~~~~~~~~~~~----p~~~Av~~~--~~~~tY~eL~~~~~~la~~L~~-~gv~~~~~V~v~~~~s~~~~v~~lavlk 3792 (4334)
T PRK05691       3720 QSYVRLFEAQVAAH----PQRIAASCL--DQQWSYAELNRAANRLGHALRA-AGVGVDQPVALLAERGLDLLGMIVGSFK 3792 (4334)
T ss_pred             cCHHHHHHHHHHhC----CCceEEEcC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHh
Confidence            58899999999999    999999998  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC-------C-eEEEeCCCcchhhhcccCCccccccccc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-------H-RTILIDSPEFDSMTMSWNSKHELDRAKV  189 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (409)
                      +|++++||+|..+.+++.++++++++++++++...........       . .++..+     +........ .......
T Consensus      3793 aG~a~vpld~~~p~~r~~~il~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~ 3866 (4334)
T PRK05691       3793 AGAGYLPLDPGLPAQRLQRIIELSRTPVLVCSAACREQARALLDELGCANRPRLLVWE-----EVQAGEVAS-HNPGIYS 3866 (4334)
T ss_pred             hCcEEeCCCCCChHHHHHHHHHhcCCCEEEecCcccchhhhhhcccccccccceeeec-----ccccccccc-cCCCCCC
Confidence            9999999999999999999999999999999886543322110       0 111111     111100000 1122335


Q ss_pred             CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC--
Q 015325          190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR--  267 (409)
Q Consensus       190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--  267 (409)
                      .+++++||+|||||||+||||+++|+++.+.+.+....+ ++++.|+++...+++|..+++.++.++..|+++++.+.  
T Consensus      3867 ~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~fd~s~~~~~~~l~~G~~l~i~~~~~ 3945 (4334)
T PRK05691       3867 GPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-ALSEADVIAQTASQSFDISVWQFLAAPLFGARVEIVPNAI 3945 (4334)
T ss_pred             CCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-CCCccceEEEecCCchhHHHHHHHHHHhCCCEEEEcCccc
Confidence            678999999999999999999999999999998888888 79999999999999999999999999999999999864  


Q ss_pred             -CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCccccc
Q 015325          268 -FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST  346 (409)
Q Consensus       268 -~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~  346 (409)
                       .++..+++.++++++|++.++|+++..++...   ...+++||.+++|||++++++.++|.+.+|+++++|.||+||++
T Consensus      3946 ~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t 4022 (4334)
T PRK05691       3946 AHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECS 4022 (4334)
T ss_pred             cCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccce
Confidence             57899999999999999999999999988643   23467899999999999999999999999999999999999998


Q ss_pred             ceecccCCCCC--CCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          347 AGVFRTVGPDE--CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       347 ~~~~~~~~~~~--~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ..++.......  .....++|+|+++++++|+| +.++++|.|..|||+|+|+++++||||+|.
T Consensus      4023 ~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~ 4085 (4334)
T PRK05691       4023 DDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLD-EALELVPLGAVGELCVAGTGVGRGYVGDPL 4085 (4334)
T ss_pred             eEEEEEEcccccccCCcCCCCCccCCCEEEEEC-CCCCCCCCCCceEEEEecccccccccCCcc
Confidence            76654322111  22345799999999999999 999999999999999999999999999874

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.5e-47  Score=375.45  Aligned_cols=360  Identities=21%  Similarity=0.226  Sum_probs=292.1

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|.+.+..+    |+++|+++.  ++++||+||.+++.++|+.|.+ .|+++|++|+++++|+.+++++++||++
T Consensus        10 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~~L~~~~~~~a~~L~~-~g~~~g~~V~i~~~n~~~~~~~~la~~~   82 (540)
T PRK06164         10 DTLASLLDAHARAR----PDAVALIDE--DRPLSRAELRALVDRLAAWLAA-QGVRRGDRVAVWLPNCIEWVVLFLACAR   82 (540)
T ss_pred             CCHHHHHHHHHHhC----CCCeEEecC--CCcccHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence            68999999999999    999999976  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH-----HHHhhc------CC-eEEEeCCCc--c--------hhhh
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV-----HKLAKL------KH-RTILIDSPE--F--------DSMT  175 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~-----~~~~~~------~~-~~~~~~~~~--~--------~~~~  175 (409)
                      +|++++|+++..+.+++.++++++++++++++++..     ..+...      .. .++.++...  .        ....
T Consensus        83 ~G~~~v~l~~~~~~~~l~~~i~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (540)
T PRK06164         83 LGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGARVQLF  162 (540)
T ss_pred             hCcEEEecCCCCCcHHHHHHHHhcCccEEEEccccccccHHHHhhcccccccCCcceEEEeccCcccCCCCCcccccccc
Confidence            999999999999999999999999999999976532     111110      11 122222000  0        0000


Q ss_pred             cccCCc--ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHH
Q 015325          176 MSWNSK--HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCF  253 (409)
Q Consensus       176 ~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~  253 (409)
                      ......  .........++++++++|||||||.||+|.+||+++..........+ ++..++++++.+|++|.+|+..++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~g~~~~~  241 (540)
T PRK06164        163 ALPDPAPPAAAGERAADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-GYDPGAVLLAALPFCGVFGFSTLL  241 (540)
T ss_pred             cccccCCcccccccCCCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEcCCchhHHHHHHHH
Confidence            000000  00001123457899999999999999999999999998888888777 688999999999999999998899


Q ss_pred             HHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecC-CCCCHHHHHHHHHhCC
Q 015325          254 RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGA-APLGKDTIMAFASKFP  332 (409)
Q Consensus       254 ~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G-~~~~~~~~~~~~~~~~  332 (409)
                      .++..|+++++.+.+++..+++.|+++++|++.++|+++..+.+.. .....++++|.+..+| .+...++.+++.+.  
T Consensus       242 ~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--  318 (540)
T PRK06164        242 GALAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR--  318 (540)
T ss_pred             HHHhcCceEEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc--
Confidence            9999999999999899999999999999999999999999998872 3445688999887766 55556676766655  


Q ss_pred             CCceecccCcccccceecccCCCC-CCCCCCcccccc-CCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          333 KVVLVQAYGLTESTAGVFRTVGPD-ECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       333 ~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~s~G~p~-~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ++++++.||+||++..++...... ......+.|.|+ +++.++|+|+++++++++|+.|||+|+|++++.|||+++.
T Consensus       319 ~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~  396 (540)
T PRK06164        319 GVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPD  396 (540)
T ss_pred             CCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCch
Confidence            889999999999987665432211 122335678875 8999999999999999999999999999999999999874

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=8.3e-47  Score=370.59  Aligned_cols=356  Identities=21%  Similarity=0.281  Sum_probs=298.8

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      +|+.+.|.+.+..+    |++++++++  +.++||.||.++++++|..|.+ .|+++|++|+++++|+.+++++++||++
T Consensus         2 ~~~~~~l~~~a~~~----p~~~~~~~~--~~~~t~~~l~~~~~~~a~~l~~-~g~~~~~~v~~~~~~~~~~~~~~~a~~~   74 (503)
T PRK04813          2 MDIIETIEEFAQTQ----PDFPAYDYL--GEKLTYGQLKEDSDALAAFIDS-LKLPDKSPIIVFGHMSPEMLATFLGAVK   74 (503)
T ss_pred             chHHHHHHHHHHhC----CCceEEEeC--CcEEeHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            67889999999888    999999987  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI  197 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  197 (409)
                      +|++++++++..+.+++.++++..++++++++.+...  .......+..  .++........  .........+++++++
T Consensus        75 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~i  148 (503)
T PRK04813         75 AGHAYIPVDVSSPAERIEMIIEVAKPSLIIATEELPL--EILGIPVITL--DELKDIFATGN--PYDFDHAVKGDDNYYI  148 (503)
T ss_pred             cCCEEecCCCCChHHHHHHHHHhcCCCEEEecccccc--cccCCcEEeh--HHhhhhhhccc--cccccccCCCCCcEEE
Confidence            9999999999999999999999999999999876421  1111112111  11111111000  0111223456889999


Q ss_pred             EcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHHHH
Q 015325          198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML  274 (409)
Q Consensus       198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~  274 (409)
                      +|||||||.||+|.++|+++..........+ .+...++++...|++|..++..++.++..|+++++.+.   .++..++
T Consensus       149 ~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~  227 (503)
T PRK04813        149 IFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-ALPEGPQFLNQAPYSFDLSVMDLYPTLASGGTLVALPKDMTANFKQLF  227 (503)
T ss_pred             EECCCCCCCCcEEEeehHHHHHHHHHHHHHc-CCCcCceeeecCCcchhHhHHHHHHHHhcCCEEEEcChhhhcCHHHHH
Confidence            9999999999999999999998888777777 68889999999999999998888999999999999875   5889999


Q ss_pred             HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325          275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG  354 (409)
Q Consensus       275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  354 (409)
                      ..+.++++|++.++|+++..+..........++++|.++++|+++++.+.++|.+.|+++.+++.||+||++..++....
T Consensus       228 ~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~  307 (503)
T PRK04813        228 ETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEI  307 (503)
T ss_pred             HHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEe
Confidence            99999999999999999988776654445567899999999999999999999999989999999999999765543221


Q ss_pred             CC---CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       355 ~~---~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ..   ......++|+|.++++++|+| ++|.+++.|+.|||+++|++++.|||+++.
T Consensus       308 ~~~~~~~~~~~~~g~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~  363 (503)
T PRK04813        308 TDEMLDQYKRLPIGYAKPDSPLLIID-EEGTKLPDGEQGEIVISGPSVSKGYLNNPE  363 (503)
T ss_pred             cccccccCCCCcccccCCCCEEEEEC-CCCCCCCCCCceEEEEeccccccccCCChh
Confidence            11   123445799999999999999 899999999999999999999999999864

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-46  Score=372.18  Aligned_cols=360  Identities=29%  Similarity=0.423  Sum_probs=291.2

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.+...+..+    |+++|+++.  ++.+||+||.+++.++|+.|.+ .|+++||+|+++++|+.++++++|||++
T Consensus        24 ~~~~~~~~~~a~~~----p~~~a~~~~--~~~~ty~eL~~~~~~la~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA~~~   96 (563)
T PRK06710         24 QPLHKYVEQMASRY----PEKKALHFL--GKDITFSVFHDKVKRFANYLQK-LGVEKGDRVAIMLPNCPQAVIGYYGTLL   96 (563)
T ss_pred             ccHHHHHHHHHHHC----CCceEEEec--CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHH
Confidence            57889998888888    999999997  7899999999999999999998 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCe-EEEeCCCc----------------------
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHR-TILIDSPE----------------------  170 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~-~~~~~~~~----------------------  170 (409)
                      +|++++|++|..+.+++.++++.++++++++++.....+...    ... ++......                      
T Consensus        97 ~G~~~vpi~p~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (563)
T PRK06710         97 AGGIVVQTNPLYTERELEYQLHDSGAKVILCLDLVFPRVTNVQSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVV  176 (563)
T ss_pred             cCeEEeccCcccCHHHHHHHHhccCCeEEEEeccchhhhhccchhhccceeEEeccccccccccccccchhhcccccccc
Confidence            999999999999999999999999999999987654433211    011 11100000                      


Q ss_pred             ----------chhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhcc-CCCCCCCCEEEE
Q 015325          171 ----------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS-SPKRVSPAVMLF  239 (409)
Q Consensus       171 ----------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~-~~~~~~~d~~l~  239 (409)
                                +..+.....  ..........+++++++|||||||.||+|.++|+++.......... +.....++++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~l~  254 (563)
T PRK06710        177 KVSESETIHLWNSVEKEVN--TGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYNCKEGEEVVLG  254 (563)
T ss_pred             cccccchhhhhhhhhhccc--cccccccCCCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccCCCCCCceEEE
Confidence                      000000000  0000111234789999999999999999999999987554333222 212344568899


Q ss_pred             eCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCC
Q 015325          240 TMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAP  318 (409)
Q Consensus       240 ~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~  318 (409)
                      ..|++|.+++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++........+++||.+++||++
T Consensus       255 ~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~  334 (563)
T PRK06710        255 VLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAP  334 (563)
T ss_pred             eCchHHHHHHHHHHHHHHHcCCeEEEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCc
Confidence            9999999988 556778999999999988999999999999999999999999999998765555567899999999999


Q ss_pred             CCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCc
Q 015325          319 LGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT  398 (409)
Q Consensus       319 ~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~  398 (409)
                      +++++.+++++.+ +.++++.||+||++...... .......++++|+|++++.++++|+++++++++|+.|||+++|+.
T Consensus       335 ~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~-~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~  412 (563)
T PRK06710        335 LPVEVQEKFETVT-GGKLVEGYGLTESSPVTHSN-FLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQ  412 (563)
T ss_pred             CCHHHHHHHHHhh-CCCEecccccccCccccccC-cccccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCc
Confidence            9999999999988 89999999999998654331 112233457899999999999999889999999999999999999


Q ss_pred             cccccCCCCC
Q 015325          399 IMKGIFLPHF  408 (409)
Q Consensus       399 v~~gY~~~~~  408 (409)
                      ++.||++++.
T Consensus       413 ~~~gY~~~~~  422 (563)
T PRK06710        413 IMKGYWNKPE  422 (563)
T ss_pred             cchhhhCChH
Confidence            9999998764

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.1e-47  Score=373.12  Aligned_cols=360  Identities=19%  Similarity=0.266  Sum_probs=290.5

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCC--CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVT--GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL  115 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~--~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~  115 (409)
                      .++.++|...+..+    |+++++.+..+  .+.+||.||.++++++|++|.+ .|+++||+|+++++|+++++++++||
T Consensus        10 ~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~Ty~el~~~~~~~a~~L~~-~g~~~~d~v~i~~~~~~~~~~~~la~   84 (539)
T PRK07008         10 LLISSLIAHAARHA----GDTEIVSRRVEGDIHRYTYRDCERRAKQLAQALAA-LGVEPGDRVGTLAWNGYRHLEAYYGV   84 (539)
T ss_pred             CCHHHHHHHHHhhC----CCceEEEeeccCcceEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence            67888988888888    88888875322  2689999999999999999999 99999999999999999999999999


Q ss_pred             HHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CCe-EEEeCC-----------Ccchhhhccc
Q 015325          116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDS-----------PEFDSMTMSW  178 (409)
Q Consensus       116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~-----------~~~~~~~~~~  178 (409)
                      +++|++++++++..+.+++..+++.+++++++++.+..+.+.+.     ... ++....           ..++++....
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (539)
T PRK07008         85 SGSGAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQ  164 (539)
T ss_pred             HhcCcEEeecccccCHHHHHHHHhccCCcEEEEcchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhccc
Confidence            99999999999999999999999999999999998765544321     111 111111           0122221111


Q ss_pred             CCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHH--HhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHH
Q 015325          179 NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA--SSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA  256 (409)
Q Consensus       179 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~--~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l  256 (409)
                      ..  ........++++++++|||||||.||+|++||+++.....  .....+ +...+|++++..|++|.+++...+.++
T Consensus       165 ~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~l  241 (539)
T PRK07008        165 DG--DYDWPRFDENQASSLCYTSGTTGNPKGALYSHRSTVLHAYGAALPDAM-GLSARDAVLPVVPMFHVNAWGLPYSAP  241 (539)
T ss_pred             CC--CcCcccCCcccceEEEECCCCCCCCcEEEEecHHHHHHHHHhhccccc-CCCCCceEEecCchHHhhhHHHHHHHH
Confidence            11  1112234567899999999999999999999999865432  233344 578899999999999988876668889


Q ss_pred             HhCCeEEEec-CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCc
Q 015325          257 ALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV  335 (409)
Q Consensus       257 ~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~  335 (409)
                      ..|+++++.+ .+++..+++.++++++|++.++|+++..+++.......++++||.++++|+++++++.++|.+.+ +++
T Consensus       242 ~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~-~~~  320 (539)
T PRK07008        242 LTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEY-GVE  320 (539)
T ss_pred             hcCceEEEecCCcCHHHHHHHHHHcCCEEEEechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHh-CCc
Confidence            9999999874 57899999999999999999999999999987766666788999999999999999999999998 899


Q ss_pred             eecccCcccccceecccCCCC---------CCCCCCccccccCCceEEEecCCCCCCCCCC--CcceEEEecCccccccC
Q 015325          336 LVQAYGLTESTAGVFRTVGPD---------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPG--KEGELSIRGPTIMKGIF  404 (409)
Q Consensus       336 i~~~yG~tE~~~~~~~~~~~~---------~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g--~~Gei~v~g~~v~~gY~  404 (409)
                      +++.||+||++..++......         ......++|+|+||++++|+| +++++++.+  +.|||+++|+.++.|||
T Consensus       321 l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~  399 (539)
T PRK07008        321 VIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVG-DDGRELPWDGKAFGDLQVRGPWVIDRYF  399 (539)
T ss_pred             eecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEEC-CCCCccCCCCCcceEEEEeCCccchhhc
Confidence            999999999986544321100         011246789999999999999 788888754  57999999999999999


Q ss_pred             CCC
Q 015325          405 LPH  407 (409)
Q Consensus       405 ~~~  407 (409)
                      +++
T Consensus       400 ~~~  402 (539)
T PRK07008        400 RGD  402 (539)
T ss_pred             CCh
Confidence            986

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=1.4e-46  Score=373.97  Aligned_cols=359  Identities=25%  Similarity=0.330  Sum_probs=280.5

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .|+.++|.+.++.+    |+++|++.+  +.++||+||.++++++|+.|.+ +|+++||+|+|+++|++++++++|||++
T Consensus        14 ~~~~~~l~~~~~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~~a~~L~~-~Gl~~gd~Vai~~~n~~e~~~~~la~~~   86 (579)
T PLN03102         14 LTPITFLKRASECY----PNRTSIIYG--KTRFTWPQTYDRCCRLAASLIS-LNITKNDVVSVLAPNTPAMYEMHFAVPM   86 (579)
T ss_pred             ccHHHHHHHHHHhC----CCCeEEEEC--CcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHh
Confidence            67888888888888    999999987  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----------CCeEEEeCCC-----------cchhhh
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----------KHRTILIDSP-----------EFDSMT  175 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~  175 (409)
                      +|++++|+++..+.+++.++++.++++++|++++....+.+.           ..+++.++..           ++.++.
T Consensus        87 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (579)
T PLN03102         87 AGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFEPLAREVLHLLSSEDSNLNLPVIFIHEIDFPKRPSSEELDYECLI  166 (579)
T ss_pred             cCcEEeeccccCCHHHHHHHHhccCCeEEEEChhhHHHHHHHHhhccccccccCceEEEecccccccCCcccccCHHHHH
Confidence            999999999999999999999999999999987765444321           1234333321           111121


Q ss_pred             cccCCcccc---cccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHH
Q 015325          176 MSWNSKHEL---DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC  252 (409)
Q Consensus       176 ~~~~~~~~~---~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~  252 (409)
                      .........   ......++++++|+|||||||.||+|+++|+++........... .....+++++.+|++|..++...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~g~~~~  245 (579)
T PLN03102        167 QRGEPTPSLVARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-EMGTCPVYLWTLPMFHCNGWTFT  245 (579)
T ss_pred             hccCCCCcccccccccCCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-CCCCCCeEEecCChhhhcchhHH
Confidence            111100000   00123468899999999999999999999999755444333333 45677899999999999998777


Q ss_pred             HHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCC
Q 015325          253 FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP  332 (409)
Q Consensus       253 ~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~  332 (409)
                      +.++..|+++++...+++..+++.|+++++|++.++|+++..|.+.........++++.+++||+++++.+.+++++ + 
T Consensus       246 ~~~~~~g~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~-  323 (579)
T PLN03102        246 WGTAARGGTSVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-L-  323 (579)
T ss_pred             HHHHHhcCcEEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-c-
Confidence            88899999999998889999999999999999999999999999875444444567888999999999999999876 5 


Q ss_pred             CCceecccCcccccceecccCCCC------C------CCCCCccccccCCceEEEecCCCCCCCCC--CCcceEEEecCc
Q 015325          333 KVVLVQAYGLTESTAGVFRTVGPD------E------CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPT  398 (409)
Q Consensus       333 ~~~i~~~yG~tE~~~~~~~~~~~~------~------~~~~~s~G~p~~~~~v~i~d~~~g~~~~~--g~~Gei~v~g~~  398 (409)
                      ++++++.||+||+++.++......      .      ....+..+.+++  .++++|.+++++++.  ++.|||+|+|++
T Consensus       324 g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~v~i~~~~~~~~v~~~~~~~GEl~v~g~~  401 (579)
T PLN03102        324 GFQVMHAYGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLA--DVDVKNKETQESVPRDGKTMGEIVIKGSS  401 (579)
T ss_pred             CCeEEeecCccccCccccccccccccccCCcccccccccCCCccccccc--ceEEeccccccccCCCCCCceEEEEECcc
Confidence            889999999999986543311100      0      011223333333  456777667788875  368999999999


Q ss_pred             cccccCCCCC
Q 015325          399 IMKGIFLPHF  408 (409)
Q Consensus       399 v~~gY~~~~~  408 (409)
                      ++.|||++|.
T Consensus       402 ~~~GY~~~~~  411 (579)
T PLN03102        402 IMKGYLKNPK  411 (579)
T ss_pred             hhhhhcCChh
Confidence            9999999864

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=1.1e-45  Score=365.51  Aligned_cols=360  Identities=27%  Similarity=0.384  Sum_probs=288.8

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      -++.+.|.+.+..+    |+++|++++  ++.+||.||.++++++|++|.+ .|+++|++|+++++|+.+++++++||++
T Consensus        21 ~~~~~~~~~~~~~~----p~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~gi~~g~~V~i~~~~~~~~~~~~la~~~   93 (541)
T TIGR03205        21 GTLPDLLSKAAADY----GPRPALEFR--DRPITYTELEAMAETAAAALLR-AGYGKDASVALYLGNTPDHPINFFGALK   93 (541)
T ss_pred             CCHHHHHHHHHHHc----CCCceEEEC--CcEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCChHHHHHHHHHHh
Confidence            58999999988888    999999987  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCch--HHHHhh---cC-C-eEEEeCCCc-------------------c
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSV--VHKLAK---LK-H-RTILIDSPE-------------------F  171 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~--~~~~~~---~~-~-~~~~~~~~~-------------------~  171 (409)
                      +|++++|+++..+.+++.++++.++++++++++..  .....+   .. . .++......                   +
T Consensus        94 ~G~~~v~l~~~~~~~~l~~~i~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (541)
T TIGR03205        94 AGARVVHLSPLDGERALSHKLSDSGARLLITSDLAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTY  173 (541)
T ss_pred             cCeEEEecCCCCCHHHHHHHHhhcCceEEEEeCchhhhHHHHHhhhcccceEEEEecccccccccccccccCCCcccccH
Confidence            99999999999999999999999999999998632  111111   00 1 122222111                   1


Q ss_pred             hhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC----CCCCCCCEEEEeCchhhHH
Q 015325          172 DSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS----PKRVSPAVMLFTMPYFHIY  247 (409)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~----~~~~~~d~~l~~~p~~~~~  247 (409)
                      +++......  ........++++++++|||||||.||+|+++|+++...........    ......+++++..|++|.+
T Consensus       174 ~~~~~~~~~--~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~  251 (541)
T TIGR03205       174 ADFVKGAAA--PAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRATRGDVERVICVLPLFHIY  251 (541)
T ss_pred             HHHHhcCCC--CCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccccccCCCCceEEEeccHHHHH
Confidence            111111000  1111234568899999999999999999999999876543221110    0123457899999999998


Q ss_pred             hH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHH
Q 015325          248 GL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMA  326 (409)
Q Consensus       248 g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~  326 (409)
                      ++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..+.+........+++||.++.||+++++++.++
T Consensus       252 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~~~~~  331 (541)
T TIGR03205       252 ALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANF  331 (541)
T ss_pred             HHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHHHHHH
Confidence            88 66788999999999988889999999999999999999999999998765444556789999999999999999999


Q ss_pred             HHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEec-CCCCCCCCCCCcceEEEecCccccccCC
Q 015325          327 FASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVD-PETGDSLPPGKEGELSIRGPTIMKGIFL  405 (409)
Q Consensus       327 ~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d-~~~g~~~~~g~~Gei~v~g~~v~~gY~~  405 (409)
                      +++.+ +.++++.||+||++..++... ......++++|.|++++.++|++ .+++++++.|+.|||+++|++++.|||+
T Consensus       332 ~~~~~-~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~  409 (541)
T TIGR03205       332 FERKT-GLKLKSGWGMTETCSPGTGHP-PEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWN  409 (541)
T ss_pred             HHHHh-CCCeecccccccCCcccccCC-CCCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccC
Confidence            99888 899999999999987655422 22233457899999999988763 2778999999999999999999999999


Q ss_pred             CCC
Q 015325          406 PHF  408 (409)
Q Consensus       406 ~~~  408 (409)
                      ++.
T Consensus       410 ~~~  412 (541)
T TIGR03205       410 RPE  412 (541)
T ss_pred             Chh
Confidence            864

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-46  Score=367.64  Aligned_cols=341  Identities=26%  Similarity=0.320  Sum_probs=271.4

Q ss_pred             CCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHH
Q 015325           56 DDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS  135 (409)
Q Consensus        56 p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~  135 (409)
                      |+++|+++.++++++||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++++++.++.+++.
T Consensus        11 p~~~a~~~~~~~~~lTy~el~~~~~~la~~L~~-~gv~~gd~V~i~~~n~~~~~~~~la~~~~Ga~~~~l~~~~~~~~~~   89 (501)
T PRK13390         11 PDRPAVIVAETGEQVSYRQLDDDSAALARVLYD-AGLRTGDVVALLSDNSPEALVVLWAALRSGLYITAINHHLTAPEAD   89 (501)
T ss_pred             CCCcEEEecCCCeEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEeccccCCCHHHHH
Confidence            999999976557899999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCeEEEEcCchHHHHhhcC--CeE-EEeCC--C---cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCc
Q 015325          136 RQIQLSNPVIAFATSSVVHKLAKLK--HRT-ILIDS--P---EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV  207 (409)
Q Consensus       136 ~~l~~~~~~~ii~~~~~~~~~~~~~--~~~-~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~p  207 (409)
                      ++++.++++++++++..........  ... +....  .   .+++....     . .......++.++|+|||||||.|
T Consensus        90 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~a~i~~TSGTTG~P  163 (501)
T PRK13390         90 YIVGDSGARVLVASAALDGLAAKVGADLPLRLSFGGEIDGFGSFEAALAG-----A-GPRLTEQPCGAVMLYSSGTTGFP  163 (501)
T ss_pred             HHHHhcCCcEEEEcchhhhHHHHhhhccceEEEecCcccccccHHHHhcc-----c-CCCCCCCcccEEEEeCCCCCCCC
Confidence            9999999999999875443322211  111 11110  0   11111110     0 00111223579999999999999


Q ss_pred             chhhh--ccHHHHHHHH---H-hhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhc
Q 015325          208 KGVML--THRNLTAAVA---S-SFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFR  281 (409)
Q Consensus       208 K~v~~--s~~~l~~~~~---~-~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~  281 (409)
                      |+|++  +|+++.....   . ....+ .+...+++++..|++|.+++...+..+..|+++++.+.+++..++..|++++
T Consensus       164 KgV~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~  242 (501)
T PRK13390        164 KGIQPDLPGRDVDAPGDPIVAIARAFY-DISESDIYYSSAPIYHAAPLRWCSMVHALGGTVVLAKRFDAQATLGHVERYR  242 (501)
T ss_pred             CEEEeeccccccccchhhhHhhHHHHh-CCCCCCeEEecccchhhhHHHHHHHHHhcCceEEEcCCcCHHHHHHHHHHcC
Confidence            99995  4555443211   1 12223 5778899999999999998855555677899999998899999999999999


Q ss_pred             ceeEeechHHHHHHHhCCC--CCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCC
Q 015325          282 VTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR  359 (409)
Q Consensus       282 ~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~  359 (409)
                      +|++.++|+++..+.+...  .....++++|.++.||+++++++.+.+++.+ +..+++.||+||+++++.. .......
T Consensus       243 ~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~-~~~~~~~  320 (501)
T PRK13390        243 ITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWL-GPIVYEYYSSTEAHGMTFI-DSPDWLA  320 (501)
T ss_pred             CeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhc-CCceeeeecccccCceEEe-cchhhcc
Confidence            9999999999999887542  2344578999999999999999999999988 7899999999999765443 2222234


Q ss_pred             CCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       360 ~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ..+++|+|+++ +++|+| ++|+++++|+.|||+++|++++.|||++|.
T Consensus       321 ~~~~~G~~~~g-~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~  367 (501)
T PRK13390        321 HPGSVGRSVLG-DLHICD-DDGNELPAGRIGTVYFERDRLPFRYLNDPE  367 (501)
T ss_pred             CCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecCCccccccCChh
Confidence            56789999999 799999 899999999999999999999999999874

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.9e-46  Score=367.91  Aligned_cols=359  Identities=20%  Similarity=0.305  Sum_probs=289.5

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeC--CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINS--VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      ++++.++|...++++    |++++++..  +..+++||+||.++++++|++|++ .|+++||+|+++++|+.+++++++|
T Consensus         9 ~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~Ty~el~~~v~~la~~L~~-~g~~~gd~v~i~~~~~~~~~~~~la   83 (542)
T PRK06018          9 PLLCHRIIDHAARIH----GNREVVTRSVEGPIVRTTYAQIHDRALKVSQALDR-DGIKLGDRVATIAWNTWRHLEAWYG   83 (542)
T ss_pred             CCCHHHHHHHHHHhC----CCceEEEeeccCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchHHHHHHHH
Confidence            389999999999998    999999853  223789999999999999999999 9999999999999999999999999


Q ss_pred             HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CCe-EEEeCCC------------cchhhhc
Q 015325          115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDSP------------EFDSMTM  176 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~~------------~~~~~~~  176 (409)
                      |+++|++++++++..+.+++..+++.+++++++++.+..+.+.+.     ... ++.+...            .+.++..
T Consensus        84 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (542)
T PRK06018         84 IMGIGAICHTVNPRLFPEQIAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIA  163 (542)
T ss_pred             HHhcCeEeeccccccCHHHHHHHHhccCCCEEEEccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhc
Confidence            999999999999999999999999999999999998765554321     111 2222110            1122211


Q ss_pred             ccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHH-HH-HHhhccCCCCCCCCEEEEeCchhhHHhHHHHHH
Q 015325          177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA-AV-ASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFR  254 (409)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~-~~-~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~  254 (409)
                      ...  .........++++++++|||||||.||+|.+||++++. .. ......+ ++..+|+++...|++|.+++...+.
T Consensus       164 ~~~--~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~p~~h~~~~~~~~~  240 (542)
T PRK06018        164 EAD--GDFAWKTFDENTAAGMCYTSGTTGDPKGVLYSHRSNVLHALMANNGDAL-GTSAADTMLPVVPLFHANSWGIAFS  240 (542)
T ss_pred             cCC--cccCcccCCccceeeEEecCCCCCCCcEEEEechhHHHHHHHHhhhhhc-CCCCCCEEEEecCHHHHhhhHHHHh
Confidence            111  01111234567899999999999999999999997532 22 2223344 5788999999999999998866678


Q ss_pred             HHHhCCeEEEec-CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCC
Q 015325          255 AAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPK  333 (409)
Q Consensus       255 ~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~  333 (409)
                      ++..|+++++.. .+++..+++.++++++|++.++|+.+..+.+.......++++||.++++|+++++++.++|++ + +
T Consensus       241 ~~~~g~~~v~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~-~  318 (542)
T PRK06018        241 APSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-M-G  318 (542)
T ss_pred             hhhcCceEEccCcCCCHHHHHHHHHhcCCceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-h-C
Confidence            899999998874 578999999999999999999999999998876555566789999999999999999999999 7 9


Q ss_pred             CceecccCcccccceecccCCCCC---------CCCCCccccccCCceEEEecCCCCCCCCCC--CcceEEEecCccccc
Q 015325          334 VVLVQAYGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPETGDSLPPG--KEGELSIRGPTIMKG  402 (409)
Q Consensus       334 ~~i~~~yG~tE~~~~~~~~~~~~~---------~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g--~~Gei~v~g~~v~~g  402 (409)
                      +++++.||+||++..++.......         .....++|+|.+|++++|+| +++++++.+  ..|||+++|++++.|
T Consensus       319 ~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d-~~~~~~~~~~~~~Gel~i~g~~~~~g  397 (542)
T PRK06018        319 VEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD-DAGKELPWDGKTFGRLKVRGPAVAAA  397 (542)
T ss_pred             CCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC-CCCCCCCCCCCceeEEEEecCCcchh
Confidence            999999999999876543211111         01235789999999999999 788888754  679999999999999


Q ss_pred             cCCC
Q 015325          403 IFLP  406 (409)
Q Consensus       403 Y~~~  406 (409)
                      ||++
T Consensus       398 y~~~  401 (542)
T PRK06018        398 YYRV  401 (542)
T ss_pred             hhcC
Confidence            9984

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=6.6e-46  Score=369.52  Aligned_cols=362  Identities=20%  Similarity=0.261  Sum_probs=291.3

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCC-CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSV-TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL  115 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~-~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~  115 (409)
                      ++|+.++|.+.+..+    |+++|++++. ..+.+||+||.+++.++|++|++..|+++||+|+++++|+.+++++++||
T Consensus         9 ~~~~~~~l~~~a~~~----~~~~a~~~~~~~~~~~Ty~el~~~~~~la~~L~~~~g~~~gd~V~~~~~n~~e~~~~~lA~   84 (576)
T PRK05620          9 PLSLTRILEYGSTVH----GDTTVTTWGGAEQEQTTFAAIGARAAALAHALHDELGITGDQRVGSMMYNCAEHLEVLFAV   84 (576)
T ss_pred             CCcHHHHHHHHHHhC----CCceEEEEcCCceEEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence            389999999999888    9999998753 24789999999999999999985369999999999999999999999999


Q ss_pred             HHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CCe-EEEeCCC----------------cchh
Q 015325          116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHR-TILIDSP----------------EFDS  173 (409)
Q Consensus       116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~-~~~~~~~----------------~~~~  173 (409)
                      +++|++++++++..+.+++.++++.++++++|+++.....+.+.     ..+ ++..+..                .|.+
T Consensus        85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (576)
T PRK05620         85 ACMGAVFNPLNKQLMNDQIVHIINHAEDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEA  164 (576)
T ss_pred             HhcCCEEeecccccCHHHHHHHHhccCCcEEEEChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHH
Confidence            99999999999999999999999999999999998765544321     111 2222211                1222


Q ss_pred             hhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHh--hccCCCCCCCCEEEEeCchhhHHhHHH
Q 015325          174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS--FASSPKRVSPAVMLFTMPYFHIYGLFF  251 (409)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~~~  251 (409)
                      +......  ........++++++++|||||||.||+|.++|+++.......  ...+ .....+++++.+|++|.+++..
T Consensus       165 l~~~~~~--~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~g~~~  241 (576)
T PRK05620        165 LLDGRST--VYDWPELDETTAAAICYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSL-AVTHGESFLCCVPIYHVLSWGV  241 (576)
T ss_pred             HhhcCCC--cCCCCCCCccceeEEEECCCCCCCCceEEEEcHHHHHHHHHhhhhhhc-CCCCCCeEEEeCChHHhhhhHH
Confidence            2221111  111233456889999999999999999999999986554432  2234 5788999999999999999977


Q ss_pred             HHHHHHhCCeEEEec-CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHh
Q 015325          252 CFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK  330 (409)
Q Consensus       252 ~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~  330 (409)
                      .+.++..|+++++.. .+++..+++.|+++++|.+.++|+++..++...........+||.+++||+++++.+.++|++.
T Consensus       242 ~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~  321 (576)
T PRK05620        242 PLAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEER  321 (576)
T ss_pred             HHHHHhcCceEEecCCCCCHHHHHHHHHHhcCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHH
Confidence            889999999998875 4789999999999999999999999998876543333344689999999999999999999999


Q ss_pred             CCCCceecccCcccccceecccCCCCC------CCCCCccccccCCceEEEecCCCCCCCC--CCCcceEEEecCccccc
Q 015325          331 FPKVVLVQAYGLTESTAGVFRTVGPDE------CRRWGSTGRLSAGLEAKIVDPETGDSLP--PGKEGELSIRGPTIMKG  402 (409)
Q Consensus       331 ~~~~~i~~~yG~tE~~~~~~~~~~~~~------~~~~~s~G~p~~~~~v~i~d~~~g~~~~--~g~~Gei~v~g~~v~~g  402 (409)
                      + ++++++.||+||++...+.......      .....++|++.++++++|+| + |++++  +|+.|||+++|+.++.|
T Consensus       322 ~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~-g~~~~~~~~~~Gel~v~g~~~~~g  398 (576)
T PRK05620        322 Y-GVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVN-D-GQVMESTDRNEGEIQVRGNWVTAS  398 (576)
T ss_pred             h-CCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEec-C-CccccCCCCCceEEEEEcCccccc
Confidence            8 8999999999999875543221110      11234789999999999999 5 77664  57899999999999999


Q ss_pred             cCCCCC
Q 015325          403 IFLPHF  408 (409)
Q Consensus       403 Y~~~~~  408 (409)
                      ||+++.
T Consensus       399 Y~~~~~  404 (576)
T PRK05620        399 YYHSPT  404 (576)
T ss_pred             ccCCcc
Confidence            999874

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.3e-46  Score=360.16  Aligned_cols=324  Identities=23%  Similarity=0.277  Sum_probs=273.0

Q ss_pred             CCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHH
Q 015325           56 DDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS  135 (409)
Q Consensus        56 p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~  135 (409)
                      ++++|++++  ++++||+||.++++++|..|+.      +|+|+++++|+.+++++++||+++|++++|+++..+.+++.
T Consensus        14 ~~~~a~~~~--~~~~Ty~el~~~~~~~a~~L~~------~~~V~l~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~l~   85 (471)
T PRK07787         14 DIADAVRIG--GRVLSRSDLAGAATAVAERVAG------ARRVAVLATPTLATVLAVVGALIAGVPVVPVPPDSGVAERR   85 (471)
T ss_pred             CCceEEEeC--CcEEEHHHHHHHHHHHHHHhcc------CCEEEEECCCCHHHHHHHHHHHhcCcEEeecCCCCChHHHH
Confidence            899999997  8999999999999999999874      58999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccH
Q 015325          136 RQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR  215 (409)
Q Consensus       136 ~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~  215 (409)
                      ++++++++++++++.+...  .  ..........     ...+     .......++++++++|||||||.||+|.++|+
T Consensus        86 ~~l~~~~~~~il~~~~~~~--~--~~~~~~~~~~-----~~~~-----~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~  151 (471)
T PRK07787         86 HILADSGAQAWLGPAPDDP--A--GLPHVPVRLH-----ARSW-----HRYPEPDPDAPALIVYTSGTTGPPKGVVLSRR  151 (471)
T ss_pred             HHHHhcCCCEEEecCCccc--c--cccceeeecc-----cccc-----ccCCCCCCCceEEEEECCCCCCCCCEEEEeHH
Confidence            9999999999999763110  0  1111110000     0000     01112456899999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHH
Q 015325          216 NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA  294 (409)
Q Consensus       216 ~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~  294 (409)
                      ++...+......+ .....+++++.+|++|.+|+ ..++.++..|+++++.+.+++..+++.++ +++|.+.++|+++..
T Consensus       152 ~l~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~  229 (471)
T PRK07787        152 AIAADLDALAEAW-QWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSR  229 (471)
T ss_pred             HHHHHHHHHHHhc-CCCccceeEeccCCeeechhHHHHHHHHhcCCEEEecCCCCHHHHHHHHh-hCceEEEcchHHHHH
Confidence            9999888777777 68889999999999999998 67899999999999998899999999999 999999999999999


Q ss_pred             HHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEE
Q 015325          295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAK  374 (409)
Q Consensus       295 l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~  374 (409)
                      +.+.... ...++++|.+++||+++++.+.++|++.+ +.++++.||+||++...+..  ......++++|+|++|++++
T Consensus       230 l~~~~~~-~~~l~~l~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~~~~--~~~~~~~~~vG~~~~g~~~~  305 (471)
T PRK07787        230 IAADPEA-ARALRGARLLVSGSAALPVPVFDRLAALT-GHRPVERYGMTETLITLSTR--ADGERRPGWVGLPLAGVETR  305 (471)
T ss_pred             HHhCccc-cccccceeEEEECCCCCCHHHHHHHHHHc-CCCeecccCccccCcceecC--CCCcccCCcccccCCCcEEE
Confidence            9875432 33578899999999999999999999988 88999999999997654432  22334567899999999999


Q ss_pred             EecCCCCCCCC-CCC-cceEEEecCccccccCCCCC
Q 015325          375 IVDPETGDSLP-PGK-EGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       375 i~d~~~g~~~~-~g~-~Gei~v~g~~v~~gY~~~~~  408 (409)
                      |+| ++|++++ +|+ .|||+++|++++.||++++.
T Consensus       306 i~d-~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~  340 (471)
T PRK07787        306 LVD-EDGGPVPHDGETVGELQVRGPTLFDGYLNRPD  340 (471)
T ss_pred             EEC-CCCCCCCCCCCCceEEEEECcccchhhcCChh
Confidence            999 6788887 454 89999999999999998864

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=1.8e-45  Score=365.52  Aligned_cols=360  Identities=21%  Similarity=0.296  Sum_probs=279.2

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      .+|....+...+..+    |+++|++++  +.++||+||.++++++|..|.+ .|+++||+|+++++|+++++++++||+
T Consensus        19 ~~~~~~~~~~~~~~~----p~~~a~~~~--~~~~ty~eL~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~la~~   91 (567)
T PLN02479         19 ALTPLWFLERAAVVH----PTRKSVVHG--SVRYTWAQTYQRCRRLASALAK-RSIGPGSTVAVIAPNIPAMYEAHFGVP   91 (567)
T ss_pred             ccCHHHHHHHHHhhC----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence            477888888888888    999999987  6899999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc------------CC-eEEEeCCC--------------
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------------KH-RTILIDSP--------------  169 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------------~~-~~~~~~~~--------------  169 (409)
                      ++|++++|+++..+.+++.++++++++++++++++..+...+.            .. .++.....              
T Consensus        92 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (567)
T PLN02479         92 MAGAVVNCVNIRLNAPTIAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYALGKG  171 (567)
T ss_pred             hCCcEEEEeccccCHHHHHHHHhhcCceEEEEchhhhhHHHHHHHHHhhcccccCCCceEEEecCCcCCccccccccccC
Confidence            9999999999999999999999999999999988754432210            01 12222110              


Q ss_pred             --cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHH
Q 015325          170 --EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY  247 (409)
Q Consensus       170 --~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  247 (409)
                        .+.++....... .........++.++++|||||||.||+|++||+++..........+ .+..++++++..|++|.+
T Consensus       172 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~h~~  249 (567)
T PLN02479        172 AIEYEKFLETGDPE-FAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-GMNEGAVYLWTLPMFHCN  249 (567)
T ss_pred             cccHHHHHhccccc-cccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-CCCCCCEEEEecchhhhh
Confidence              112221111100 0001122234677899999999999999999999876655554455 578889999999999999


Q ss_pred             hHHHHHH-HHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCC-CCCCCcceeeecCCCCCHHHHH
Q 015325          248 GLFFCFR-AAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG-YDLSSLETVACGAAPLGKDTIM  325 (409)
Q Consensus       248 g~~~~~~-~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~-~~l~~Lr~v~~~G~~~~~~~~~  325 (409)
                      ++...+. .+..|. .++...+++..+++.++++++|++.++|+++..|.+...... ..++++|.++++|+++++.+.+
T Consensus       250 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~~~~~~  328 (567)
T PLN02479        250 GWCFTWTLAALCGT-NICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPPPSVLF  328 (567)
T ss_pred             hHHHHHHHHhhcCc-eEeccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCCHHHHH
Confidence            8844443 445554 455567899999999999999999999999999987643322 2568899999999999999999


Q ss_pred             HHHHhCCCCceecccCcccccceecccCC-C-------CC-CCCCCccccccCCce-EEEecCCCCCCCCCC--CcceEE
Q 015325          326 AFASKFPKVVLVQAYGLTESTAGVFRTVG-P-------DE-CRRWGSTGRLSAGLE-AKIVDPETGDSLPPG--KEGELS  393 (409)
Q Consensus       326 ~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~-------~~-~~~~~s~G~p~~~~~-v~i~d~~~g~~~~~g--~~Gei~  393 (409)
                      +|++.  +.++++.||+||+++.++.... .       .. .....+.|.+.+|++ ++|+|++++++++.+  +.|||+
T Consensus       329 ~~~~~--~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~  406 (567)
T PLN02479        329 AMSEK--GFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIV  406 (567)
T ss_pred             HHHhc--CCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEE
Confidence            99875  7899999999998654332110 0       00 011245788888886 899997788988764  679999


Q ss_pred             EecCccccccCCCCC
Q 015325          394 IRGPTIMKGIFLPHF  408 (409)
Q Consensus       394 v~g~~v~~gY~~~~~  408 (409)
                      ++|++++.|||+++.
T Consensus       407 v~g~~~~~GY~~~~~  421 (567)
T PLN02479        407 MRGNMVMKGYLKNPK  421 (567)
T ss_pred             EeccchhhhhhcCcc
Confidence            999999999999875

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.1e-45  Score=369.55  Aligned_cols=356  Identities=19%  Similarity=0.231  Sum_probs=285.1

Q ss_pred             CCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      ....|+.+.|.+.+.++    |+++|++++  ++.+||+||.++++++|+.|.+ .|+++|++|+++++|+.+++++++|
T Consensus        34 ~~~~tl~~~l~~~a~~~----p~~~Ai~~~--~~~~Ty~eL~~~~~~la~~L~~-~g~~~gd~V~i~~~n~~~~v~~~lA  106 (600)
T PRK08279         34 DSKRSLGDVFEEAAARH----PDRPALLFE--DQSISYAELNARANRYAHWAAA-RGVGKGDVVALLMENRPEYLAAWLG  106 (600)
T ss_pred             CCcccHHHHHHHHHHhC----CCCcEEEeC--CCcccHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCCCHHHHHHHHH
Confidence            44589999999999999    999999998  7899999999999999999999 9999999999999999999999999


Q ss_pred             HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC-----C-eEEEeCC------CcchhhhcccCCcc
Q 015325          115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----H-RTILIDS------PEFDSMTMSWNSKH  182 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~-~~~~~~~------~~~~~~~~~~~~~~  182 (409)
                      |+++|++++++++..+.+++.++++.++++++|++.+....+....     . .++..+.      ..+.++........
T Consensus       107 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (600)
T PRK08279        107 LAKLGAVVALLNTQQRGAVLAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGAP  186 (600)
T ss_pred             HHhcCcEEeecCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHhhhhcccceEEEecCccccccccHHHHhhhcccCC
Confidence            9999999999999999999999999999999999987665544221     1 1222211      11222221111100


Q ss_pred             ---cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHh
Q 015325          183 ---ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAAL  258 (409)
Q Consensus       183 ---~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~  258 (409)
                         .........+++++|+|||||||.||+|++||+++...+......+ .+.+.|++++.+|++|.+++ ..++.++..
T Consensus       187 ~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~  265 (600)
T PRK08279        187 TTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-RLTPDDVLYCCLPLYHNTGGTVAWSSVLAA  265 (600)
T ss_pred             ccCCCcccCCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-CCCCCcEEEEecCchhhhhHHHHHHHHHhc
Confidence               1112234568899999999999999999999999999988877777 78999999999999999999 566778889


Q ss_pred             CCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325          259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ  338 (409)
Q Consensus       259 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  338 (409)
                      |+++++.+.+++..+++.++++++|++.++|+++..+............++|.+  +|+.++++++++|.+.|+...+++
T Consensus       266 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~  343 (600)
T PRK08279        266 GATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILE  343 (600)
T ss_pred             CcEEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCcceeee
Confidence            999999999999999999999999999999999999988654444345667754  478899999999999996667999


Q ss_pred             ccCcccccceecccCCCCCCCCCCccccccC----CceEE---------EecCCCC--CCCCCCCcceEE--EecCcccc
Q 015325          339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSA----GLEAK---------IVDPETG--DSLPPGKEGELS--IRGPTIMK  401 (409)
Q Consensus       339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~----~~~v~---------i~d~~~g--~~~~~g~~Gei~--v~g~~v~~  401 (409)
                      .||+||++...+.     .....+++|.+.+    +..+.         +.+ .++  .++++|+.|||+  ++|++++.
T Consensus       344 ~YG~tE~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~g~~Gel~~~i~~~~~~~  417 (600)
T PRK08279        344 FYAASEGNVGFIN-----VFNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRD-ADGRCIKVKPGEVGLLIGRITDRGPFD  417 (600)
T ss_pred             eecccccceeecc-----cCCCCcccccccccccccceeeeeccCcCceeeC-CCCccccCCCCCceeEEEEecCccccc
Confidence            9999998754332     1234567777665    33332         333 222  357899999998  78999999


Q ss_pred             ccCCCC
Q 015325          402 GIFLPH  407 (409)
Q Consensus       402 gY~~~~  407 (409)
                      || +++
T Consensus       418 GY-~~~  422 (600)
T PRK08279        418 GY-TDP  422 (600)
T ss_pred             cc-CCc
Confidence            99 654

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.7e-45  Score=360.92  Aligned_cols=360  Identities=27%  Similarity=0.409  Sum_probs=290.2

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.|...++++    |+++|+++.  ++.+||.||.++++++|..|+++.|+++|++|+++++|++++++++|||++
T Consensus        23 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~lTy~~l~~~~~~la~~L~~~~g~~~g~~V~i~~~~~~~~~~~~lA~~~   96 (560)
T PRK08974         23 QSLVDMFEQAVARY----ADQPAFINM--GEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILR   96 (560)
T ss_pred             ccHHHHHHHHHHhC----CCCceEEEC--CccccHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence            57899999888888    999999987  789999999999999999998327999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCeEEEeCC--Cc---------------------
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILIDS--PE---------------------  170 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~~--~~---------------------  170 (409)
                      +|++++|+++..+.+++.++++++++++++++++....+.+.    ....+....  ..                     
T Consensus        97 ~G~~~v~l~~~~~~~~~~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (560)
T PRK08974         97 AGMIVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTPVKHVILTRMGDQLSTAKGTLVNFVVKYIKRLVP  176 (560)
T ss_pred             cCcEEeccCccCCHHHHHHHHHhcCceEEEEeccccHHHHHHhhhcCcceEEEecccccccccccccccchhhhcccccc
Confidence            999999999999999999999999999999987644433221    111111100  00                     


Q ss_pred             ---------chhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCC--CCCCCCEEEE
Q 015325          171 ---------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP--KRVSPAVMLF  239 (409)
Q Consensus       171 ---------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~d~~l~  239 (409)
                               +.+...... ..........++++++++|||||||.||+|.++|+++..........+.  .....+.++.
T Consensus       177 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~  255 (560)
T PRK08974        177 KYHLPDAISFRSALHKGR-RMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVVT  255 (560)
T ss_pred             cccCCCcccHHHHhhccC-CCCCCCCCCCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccccCCCccEEEE
Confidence                     000000000 0001112245689999999999999999999999999876654433221  2345678889


Q ss_pred             eCchhhHHhH-HHHHHHHHhCCeEEEec-CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCC
Q 015325          240 TMPYFHIYGL-FFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAA  317 (409)
Q Consensus       240 ~~p~~~~~g~-~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~  317 (409)
                      .+|++|.+++ ...+..+..|+++++.. ..++..++..++++++|.+.++|+++..+..........+++||.+++||+
T Consensus       256 ~~p~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~  335 (560)
T PRK08974        256 ALPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGM  335 (560)
T ss_pred             eCcHHHHHHHHHHHHHHhhcCCeEEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCc
Confidence            9999999887 55777888999877764 467899999999999999999999999998876555566789999999999


Q ss_pred             CCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecC
Q 015325          318 PLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP  397 (409)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~  397 (409)
                      ++++.+.++|++.+ ++++++.||+||++..++... .......+++|.|+|+++++|+| +++++++.|+.|||+++|+
T Consensus       336 ~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~~~~~~~-~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~~~g~~Gel~v~g~  412 (560)
T PRK08974        336 AVQQAVAERWVKLT-GQYLLEGYGLTECSPLVSVNP-YDLDYYSGSIGLPVPSTEIKLVD-DDGNEVPPGEPGELWVKGP  412 (560)
T ss_pred             cCCHHHHHHHHHHh-CCcEEeeecccccCceeeccC-CCCcccCCccccCcCCCEEEEEC-CCCCCCCCCCceEEEEecC
Confidence            99999999999988 899999999999987665432 22234467899999999999999 6899999999999999999


Q ss_pred             ccccccCCCC
Q 015325          398 TIMKGIFLPH  407 (409)
Q Consensus       398 ~v~~gY~~~~  407 (409)
                      .++.||++++
T Consensus       413 ~~~~gy~~~~  422 (560)
T PRK08974        413 QVMLGYWQRP  422 (560)
T ss_pred             CcchhhcCCh
Confidence            9999999875

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=2.7e-45  Score=350.36  Aligned_cols=331  Identities=24%  Similarity=0.271  Sum_probs=278.0

Q ss_pred             eHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 015325           71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS  150 (409)
Q Consensus        71 Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  150 (409)
                      ||.||.+.++++|+.|.++.|+++||+|+++++|+++++++++||+++|++++++++..+.+++.++++++++++++++.
T Consensus         1 t~~~l~~~~~~~a~~l~~~~g~~~gd~v~l~~~n~~~~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~l~~~~~~~ii~~~   80 (408)
T TIGR01733         1 TYRELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAILAVLKAGAAYVPLDPAYPAERLAFILEDAGARLLLTDS   80 (408)
T ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHhcCCCEEEEcC
Confidence            79999999999999999657999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCC
Q 015325          151 SVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK  230 (409)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~  230 (409)
                      +....+................ ...... ...........+++++++|||||||.||+|.+||+++..........+ .
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~-~  157 (408)
T TIGR01733        81 ALASRLAGLVLPIILVDPLELA-ALDDAP-APPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRY-G  157 (408)
T ss_pred             chhhhccccCCceEEechhhhh-hccccc-ccccccCCCCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhc-C
Confidence            8777665443333333211111 111110 001111113468899999999999999999999999999888888777 6


Q ss_pred             CCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCC---HHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCC
Q 015325          231 RVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFD---LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLS  307 (409)
Q Consensus       231 ~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~---~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~  307 (409)
                      ..+.|++++..|++|.+++..++.++..|+++++.+...   +..+...++++++|.+.++|.+++.+.+...   ..++
T Consensus       158 ~~~~~~~~~~~p~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~---~~~~  234 (408)
T TIGR01733       158 LDPDDRVLQFASLSFDASVEEIFGTLLAGATLVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP---PALA  234 (408)
T ss_pred             CCCCceEEEecCCccchhHHHHHHHHhCCCEEEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh---hccc
Confidence            888999999999999999999999999999999987643   6899999999999999999999999998754   4578


Q ss_pred             CcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC-CCCCC--CCCccccccCCceEEEecCCCCCCC
Q 015325          308 SLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG-PDECR--RWGSTGRLSAGLEAKIVDPETGDSL  384 (409)
Q Consensus       308 ~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~-~~~~~--~~~s~G~p~~~~~v~i~d~~~g~~~  384 (409)
                      +||.+++||+++++++.++|++.++++.+++.||+||++..+..... .....  ++.++|+|+++++++|+| ++++++
T Consensus       235 ~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~-~~~~~~  313 (408)
T TIGR01733       235 SLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLD-DDLRPV  313 (408)
T ss_pred             CceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEEC-CCCCCC
Confidence            99999999999999999999999966999999999999876643221 11111  267899999999999999 559999


Q ss_pred             CCCCcceEEEecCccccccCCCCC
Q 015325          385 PPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       385 ~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ++|+.|||+++|++++.||++++.
T Consensus       314 ~~g~~Gel~v~~~~~~~gy~~~~~  337 (408)
T TIGR01733       314 PVGVVGELYIGGPGVARGYLNRPE  337 (408)
T ss_pred             CCCCceEEEecCccccccccCChh
Confidence            999999999999999999998753

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.8e-45  Score=363.36  Aligned_cols=358  Identities=18%  Similarity=0.227  Sum_probs=280.9

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCC--ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL  115 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~  115 (409)
                      .++.+.|...++++    |+.+ +++...+  +.+||.||++++.++|++|++ .|+++||+|+++++|+++++++++||
T Consensus        21 ~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~Ty~eL~~~~~~~a~~L~~-~gi~~gd~V~l~~~n~~~~~~~~lA~   94 (579)
T PRK09192         21 PTLVEALDYAALGE----AGMN-FYDRRGQLEEALPYQTLRARAEAGARRLLA-LGLKPGDRVALIAETDGDFVEAFFAC   94 (579)
T ss_pred             hhHHHHHHHhhccC----CceE-EEecCCCEEEEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCchhHHHHHHHH
Confidence            58999999999887    7555 4453222  679999999999999999999 99999999999999999999999999


Q ss_pred             HHhCCeEccCCCCCC-------HHHHHHHHhhcCCeEEEEcCchHHHHhhc--CCeEEEeCCCcchhhhcccCCcccccc
Q 015325          116 LSLGVIISPANPVNT-------ESEISRQIQLSNPVIAFATSSVVHKLAKL--KHRTILIDSPEFDSMTMSWNSKHELDR  186 (409)
Q Consensus       116 ~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (409)
                      +++|++++++++..+       .+++.++++.+++++++++....+.+...  ......+  ..+..+......  ....
T Consensus        95 ~~~G~~~v~i~~~~~~~~~~~~~~~l~~~i~~~~~~~il~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~  170 (579)
T PRK09192         95 QYAGLVPVPLPLPMGFGGRESYIAQLRGMLASAQPAAIITPDELLPWVNEATHGNPLLHV--LSHAWFKALPEA--DVAL  170 (579)
T ss_pred             HHcCCeeEeccCCcccccchHHHHHHHHHHHhcCCCEEEeChHHHHHHHHhhccccccce--eehhhhcccCCC--cccc
Confidence            999999999986433       68999999999999999998766554432  1111111  112222211111  1112


Q ss_pred             cccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc-cCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEE
Q 015325          187 AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA-SSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVV  264 (409)
Q Consensus       187 ~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~-~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~  264 (409)
                      ....++++++++|||||||.||+|.++|+++...+..... .+ +..+.|+++..+|++|.+++ ..++.++..|+++++
T Consensus       171 ~~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~  249 (579)
T PRK09192        171 PRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-KVRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDY  249 (579)
T ss_pred             CCCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-cCCCCCeEEEeCCCCCcchhHHHHHHHHHhCCeeEe
Confidence            2345688999999999999999999999999988877776 55 68889999999999999998 456778899999977


Q ss_pred             ecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC---CCCCCCCCcceeeecCCCCCHHHHHHHHHhCC--C--
Q 015325          265 MQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS---TDGYDLSSLETVACGAAPLGKDTIMAFASKFP--K--  333 (409)
Q Consensus       265 ~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~---~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~--~--  333 (409)
                      .+.    .++..++..+.+++++++...|..+..+.....   ....++++||.+++||+++++.+.++|.+.++  +  
T Consensus       250 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~  329 (579)
T PRK09192        250 LPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFD  329 (579)
T ss_pred             eCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCC
Confidence            752    368899999999999987776655555543321   23356789999999999999999999999873  1  


Q ss_pred             -CceecccCcccccceecccCCCCC--------------------------CCCCCccccccCCceEEEecCCCCCCCCC
Q 015325          334 -VVLVQAYGLTESTAGVFRTVGPDE--------------------------CRRWGSTGRLSAGLEAKIVDPETGDSLPP  386 (409)
Q Consensus       334 -~~i~~~yG~tE~~~~~~~~~~~~~--------------------------~~~~~s~G~p~~~~~v~i~d~~~g~~~~~  386 (409)
                       ..+++.||+||+++.++.......                          .....++|+|+|+++++|+| +++++++.
T Consensus       330 ~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d-~~~~~~~~  408 (579)
T PRK09192        330 DKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRN-EAGMPLPE  408 (579)
T ss_pred             hhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEEC-CCCCCCCC
Confidence             358999999999765554221110                          01125789999999999999 78999999


Q ss_pred             CCcceEEEecCccccccCCCC
Q 015325          387 GKEGELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       387 g~~Gei~v~g~~v~~gY~~~~  407 (409)
                      |+.|||+++|++++.|||+++
T Consensus       409 g~~Gel~i~g~~~~~gY~~~~  429 (579)
T PRK09192        409 RVVGHICVRGPSLMSGYFRDE  429 (579)
T ss_pred             CCEEEEEecCCchhhhhcCCc
Confidence            999999999999999999984

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-45  Score=364.26  Aligned_cols=356  Identities=21%  Similarity=0.281  Sum_probs=272.6

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCC-------CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSV-------TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI  110 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~-------~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~  110 (409)
                      +++.+.|.+.+..+    |+++|+++.+       ..+++||.||.++++++|++|++ .| ++||+|+++++|++++++
T Consensus         1 ~s~~~~l~~~a~~~----p~~~a~~~~~~~~~~~~~~~~lty~eL~~~v~~~A~~L~~-~g-~~gd~V~l~~~n~~~~~~   74 (578)
T PRK05850          1 SSVPSLLRERASLQ----PDDAAFTFIDYEQDPAGVAETLTWSQLYRRTLNVAEELRR-HG-STGDRAVILAPQGLEYIV   74 (578)
T ss_pred             CcHHHHHHHHHhcC----CCceEEEEEccCCCCCCceeeecHHHHHHHHHHHHHHHHH-hC-CCCCEEEEEcCCcccHHH
Confidence            46778888888888    9999998632       12689999999999999999999 89 689999999999999999


Q ss_pred             HHHHHHHhCCeEccCCC---CCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-------CC-eEEEeCCCcchhhhcccC
Q 015325          111 LYFSLLSLGVIISPANP---VNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KH-RTILIDSPEFDSMTMSWN  179 (409)
Q Consensus       111 ~~~A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~  179 (409)
                      +++||+++|++++|+++   ..+.+++.++++++++++++++++....+...       .. .++..+...+.   ..  
T Consensus        75 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--  149 (578)
T PRK05850         75 AFLGALQAGLIAVPLSVPQGGAHDERVSAVLRDTSPSVVLTTSAVVDDVTEYVAPQPGQSAPPVIEVDLLDLD---SP--  149 (578)
T ss_pred             HHHHHHHcCceEEecCCCCccchHHHHHHHHHhcCCCEEEEcHHHHHHHHHHHhhcccccccceEeecccccc---cC--
Confidence            99999999999999997   55789999999999999999998766655421       01 11111111100   00  


Q ss_pred             CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC-C----CCCCCCEEEEeCchhhHHhH-HHHH
Q 015325          180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-P----KRVSPAVMLFTMPYFHIYGL-FFCF  253 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~-~----~~~~~d~~l~~~p~~~~~g~-~~~~  253 (409)
                       . ........++++++++|||||||.||||.+||++++..+....... .    .....+++++..|++|.+|+ ..++
T Consensus       150 -~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pl~h~~g~~~~~~  227 (578)
T PRK05850        150 -R-GSDARPRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGVPPPDTTVVSWLPFYHDMGLVLGVC  227 (578)
T ss_pred             -C-ccccCCCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccccccCCCCcceEEEECCCCCCchhHHHHH
Confidence             0 1111234568999999999999999999999999987765543322 0    13567899999999999998 6789


Q ss_pred             HHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHH-HHHHhCC---CCCCCCCCCcceeeecCCCCCHHHHH
Q 015325          254 RAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIV-VAMSKGG---STDGYDLSSLETVACGAAPLGKDTIM  325 (409)
Q Consensus       254 ~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l-~~l~~~~---~~~~~~l~~Lr~v~~~G~~~~~~~~~  325 (409)
                      .++..|+++++.+.    .++..++..+++++++.. .+|..+ ..+....   .....+++++|.+++||+++++++.+
T Consensus       228 ~~l~~G~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~  306 (578)
T PRK05850        228 APILGGCPAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLK  306 (578)
T ss_pred             HHHhcCCcEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHH
Confidence            99999999999864    278999999999999865 556544 3333221   11234578899999999999999999


Q ss_pred             HHHHhCC-----CCceecccCcccccceecccCCCCC-----------------------CCCCCccccccCCceEEEec
Q 015325          326 AFASKFP-----KVVLVQAYGLTESTAGVFRTVGPDE-----------------------CRRWGSTGRLSAGLEAKIVD  377 (409)
Q Consensus       326 ~~~~~~~-----~~~i~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~s~G~p~~~~~v~i~d  377 (409)
                      +|.+.|+     +..+++.||+||++..+........                       .....++|.|. +.+++|+|
T Consensus       307 ~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~-~~~~~ivd  385 (578)
T PRK05850        307 RFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPR-SPTVRIVD  385 (578)
T ss_pred             HHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCC-CCEEEEEc
Confidence            9998872     3579999999998754432111000                       00012345554 57899999


Q ss_pred             CCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          378 PETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       378 ~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ++++++++.|+.|||+|+|+.++.|||+++.
T Consensus       386 ~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~  416 (578)
T PRK05850        386 PDTCIECPAGTVGEIWVHGDNVAAGYWQKPE  416 (578)
T ss_pred             CCCCcCCCCCCEEEEEEecCcccccccCChh
Confidence            8889999999999999999999999999874

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.4e-44  Score=352.44  Aligned_cols=341  Identities=23%  Similarity=0.267  Sum_probs=275.5

Q ss_pred             CCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHH
Q 015325           56 DDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS  135 (409)
Q Consensus        56 p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~  135 (409)
                      |+++|+++..+++.+||.||.++++++|+.|++ .|+++|++|+++++|+++++++++||+++|++++++++..+.+++.
T Consensus        11 p~~~a~~~~~~~~~~ty~~l~~~~~~la~~L~~-~g~~~~~~V~v~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~l~   89 (511)
T PRK13391         11 PDKPAVIMASTGEVVTYRELDERSNRLAHLFRS-LGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAEAA   89 (511)
T ss_pred             CCceEEEecCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHhccEEeccccccCHHHHH
Confidence            999999985557889999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCeEEEEcCchHHHHhhc----C-C-eEEEeCC-C---c---chhhhcccCCcccccccccCCCCEEEEEcCCC
Q 015325          136 RQIQLSNPVIAFATSSVVHKLAKL----K-H-RTILIDS-P---E---FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSG  202 (409)
Q Consensus       136 ~~l~~~~~~~ii~~~~~~~~~~~~----~-~-~~~~~~~-~---~---~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSG  202 (409)
                      ++++.+++++++++........+.    . . ..+.... .   .   +.+....     .........++.++++||||
T Consensus        90 ~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~a~il~TSG  164 (511)
T PRK13391         90 YIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAG-----LPATPIADESLGTDMLYSSG  164 (511)
T ss_pred             HHHhccCCcEEEEchhhHHHHHHHHhcCCCceEEEEecCCCCCcccccHHHHhcC-----CCCCCCCCcccccEEEECCC
Confidence            999999999999998665443321    1 1 1122211 0   0   1111110     00111123345789999999


Q ss_pred             CCCCcchhhh--ccHHHHH---HHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHH
Q 015325          203 TTGRVKGVML--THRNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV  277 (409)
Q Consensus       203 TTG~pK~v~~--s~~~l~~---~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i  277 (409)
                      |||.||+|.+  +|.++..   ........+ ...+.+++++..|++|.+++...+.++..|+++++.+.+++..+++.+
T Consensus       165 tTG~PKgv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i  243 (511)
T PRK13391        165 TTGRPKGIKRPLPEQPPDTPLPLTAFLQRLW-GFRSDMVYLSPAPLYHSAPQRAVMLVIRLGGTVIVMEHFDAEQYLALI  243 (511)
T ss_pred             CCCCCCEEEEccccchhhhhhHHHHHHHHhc-CCCCCCeEEEcCCHHHHHHHHHHHHHHHcCceEEECCCCCHHHHHHHH
Confidence            9999999995  4555432   223333444 567889999999999999987778899999999999989999999999


Q ss_pred             HHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCC
Q 015325          278 EEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP  355 (409)
Q Consensus       278 ~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~  355 (409)
                      +++++|++.++|+++..+.+...  ....+++++|.+++||+++++++.+++++.+ +..+++.||+||++..... ...
T Consensus       244 ~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~-g~~v~~~YG~tE~~~~~~~-~~~  321 (511)
T PRK13391        244 EEYGVTHTQLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWW-GPIIHEYYAATEGLGFTAC-DSE  321 (511)
T ss_pred             HHhCCeEEEehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHc-CCceeeeeccccccceEEe-cCc
Confidence            99999999999999998887543  2344578999999999999999999999988 7889999999999875543 222


Q ss_pred             CCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          356 DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       356 ~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .....++++|+|+++ +++|+| ++|++++.|+.|||+++|+ ++.|||+++.
T Consensus       322 ~~~~~~~~vG~~~~g-~~~i~d-~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~  371 (511)
T PRK13391        322 EWLAHPGTVGRAMFG-DLHILD-DDGAELPPGEPGTIWFEGG-RPFEYLNDPA  371 (511)
T ss_pred             cccccCCCcCCcccc-eEEEEC-CCCCCCCCCCceEEEEecC-cceEEcCChh
Confidence            223456789999999 699999 8999999999999999999 8999999764

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.9e-44  Score=383.90  Aligned_cols=355  Identities=19%  Similarity=0.246  Sum_probs=286.7

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      ..++.+.+.+.+++++   |++.++.+. +++++||+||.++++++|+.|++  |+++||+|+++++|+++++++++||+
T Consensus       630 ~~~~~~~l~~~~~~~~---~~~~ai~~~-~~~~~Ty~el~~~~~~lA~~L~~--g~~~gd~V~i~~~n~~~~~~~~la~~  703 (1140)
T PRK06814        630 DRTLFEALIEAAKIHG---FKKLAVEDP-VNGPLTYRKLLTGAFVLGRKLKK--NTPPGENVGVMLPNANGAAVTFFALQ  703 (1140)
T ss_pred             cCCHHHHHHHHHHHcC---CCCeEeECC-CCCccCHHHHHHHHHHHHHHHHh--cCCCCCeEEEEcCCchHHHHHHHHHH
Confidence            4667788888888772   456777653 36789999999999999999964  99999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHH------hhc--CCeEEEeCCCc-----chhhhcccC-Ccc
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKL------AKL--KHRTILIDSPE-----FDSMTMSWN-SKH  182 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~------~~~--~~~~~~~~~~~-----~~~~~~~~~-~~~  182 (409)
                      ++|++++++++..+.+++.++++++++++++++++.....      .+.  ..+++.++...     ++.+..... ...
T Consensus       704 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  783 (1140)
T PRK06814        704 SAGRVPAMINFSAGIANILSACKAAQVKTVLTSRAFIEKARLGPLIEALEFGIRIIYLEDVRAQIGLADKIKGLLAGRFP  783 (1140)
T ss_pred             HCCCEEEEcCCCCCHHHHHHHHHHcCCCEEEecHHHHhhhcchhHHHHhccCceEEEehHhhccCChHHHHHHHhhccCC
Confidence            9999999999999999999999999999999987644321      111  22333333110     000000000 000


Q ss_pred             cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCe
Q 015325          183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMET  261 (409)
Q Consensus       183 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~  261 (409)
                      ........++|+++++|||||||.||+|.+||+++..........+ ...++|++++.+|++|.+++ ..++.++..|++
T Consensus       784 ~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~  862 (1140)
T PRK06814        784 LVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFSPEDKVFNALPVFHSFGLTGGLVLPLLSGVK  862 (1140)
T ss_pred             ccccCCCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-CCCCcCEEEEecchHHHHHHHHHHHHHHHcCCE
Confidence            1111134678999999999999999999999999998888877777 68899999999999999998 788999999999


Q ss_pred             EEEecC-CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceeccc
Q 015325          262 AVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY  340 (409)
Q Consensus       262 ~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  340 (409)
                      +++.+. .+...+.+.++++++|++.++|++++.+.+..  ...+++++|.+++||+++++++.++|++.+ +.++++.|
T Consensus       863 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~-~~~~~~~Y  939 (1140)
T PRK06814        863 VFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKF-GIRILEGY  939 (1140)
T ss_pred             EEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHh-CCcEEecc
Confidence            998864 56788899999999999999999999988753  345678999999999999999999999998 89999999


Q ss_pred             CcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          341 GLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       341 G~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      |+||++..++..  .......+++|+|+|++++++++ ..+    .|+.|||+++|++++.|||+++.
T Consensus       940 G~TE~~~~~~~~--~~~~~~~~~vG~p~~g~~~~~~~-~~~----~~~~Gel~v~g~~~~~gY~~~~~ 1000 (1140)
T PRK06814        940 GVTETAPVIALN--TPMHNKAGTVGRLLPGIEYRLEP-VPG----IDEGGRLFVRGPNVMLGYLRAEN 1000 (1140)
T ss_pred             ccccccceEEec--CCCCCCCCcCCccCCCCeEEEee-cCC----CCCceEEEEeCCCcchhhcCCCC
Confidence            999998766542  22334567999999999999987 433    36789999999999999998753

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=7.3e-44  Score=352.25  Aligned_cols=355  Identities=22%  Similarity=0.289  Sum_probs=282.5

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      +|+.++|.+.++++    |+++|++++  ++.+||.||.++++++|+.|.+ .|+++||+|+++++|++++++++|||++
T Consensus         3 ~~l~~~~~~~a~~~----p~~~a~~~~--~~~~ty~el~~~~~~la~~L~~-~g~~~~~~v~v~~~n~~~~~~~~~a~~~   75 (533)
T PRK07798          3 WNIADLFEAVADAV----PDRVALVCG--DRRLTYAELEERANRLAHYLIA-QGLGPGDHVGIYARNRIEYVEAMLGAFK   75 (533)
T ss_pred             ccHHHHHHHHHHhC----CCceEEEEC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence            68999999999999    999999997  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC-----C-eEEEeCCC----------cchhhhcccCCc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK-----H-RTILIDSP----------EFDSMTMSWNSK  181 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~-~~~~~~~~----------~~~~~~~~~~~~  181 (409)
                      +|++++++++.++.+++.++++++++++++++.+....+.+..     . .++.++..          .++++...... 
T Consensus        76 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  154 (533)
T PRK07798         76 ARAVPVNVNYRYVEDELRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSP-  154 (533)
T ss_pred             cCeEEEecCcCCCHHHHHHHHhhcCCCEEEEchhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCC-
Confidence            9999999999999999999999999999999987655554321     1 12222211          22232222111 


Q ss_pred             ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCC--------------CCCCCCEEEEeCchhhHH
Q 015325          182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP--------------KRVSPAVMLFTMPYFHIY  247 (409)
Q Consensus       182 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~--------------~~~~~d~~l~~~p~~~~~  247 (409)
                       . ........+.++++|||||||.||+|+++|+++..........+.              ....+++++...|++|..
T Consensus       155 -~-~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~  232 (533)
T PRK07798        155 -E-RDFGERSPDDLYLLYTGGTTGMPKGVMWRQEDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGA  232 (533)
T ss_pred             -c-CCCCCCCCCceEEEECCCCCCCCcEEEEecHHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhh
Confidence             1 111122344579999999999999999999998765443222110              115678999999999999


Q ss_pred             hHHHHHHHHHhCCeEEEec--CCCHHHHHHHHHHhcceeEeechHHHH-HHHhCCC-CCCCCCCCcceeeecCCCCCHHH
Q 015325          248 GLFFCFRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVV-AMSKGGS-TDGYDLSSLETVACGAAPLGKDT  323 (409)
Q Consensus       248 g~~~~~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~-~l~~~~~-~~~~~l~~Lr~v~~~G~~~~~~~  323 (409)
                      +++.++.++..|+++++.+  .+++..++..++++++|.+.++|..+. .+.+... ....+++++|.+++||+++++++
T Consensus       233 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~  312 (533)
T PRK07798        233 GQWAAFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSV  312 (533)
T ss_pred             hHHHHHHHHhcCceEEEecCCCcCHHHHHHHHHHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHH
Confidence            9988999999999999998  789999999999999999999986553 3333322 23446789999999999999999


Q ss_pred             HHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccc--cccCCceEEEecCCCCCCCCCCCc--ceEEEecCcc
Q 015325          324 IMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG--RLSAGLEAKIVDPETGDSLPPGKE--GELSIRGPTI  399 (409)
Q Consensus       324 ~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G--~p~~~~~v~i~d~~~g~~~~~g~~--Gei~v~g~~v  399 (409)
                      .++|++.+++..+++.||+||++...+.. ...   .....|  .+.++..++|+| ++|+++++|+.  |+|+ +++.+
T Consensus       313 ~~~~~~~~~~~~~~~~YG~tE~~~~~~~~-~~~---~~~~~g~~~~~~~~~~~i~~-~~~~~~~~g~~~~g~l~-~~~~~  386 (533)
T PRK07798        313 KEALLELLPNVVLTDSIGSSETGFGGSGT-VAK---GAVHTGGPRFTIGPRTVVLD-EDGNPVEPGSGEIGWIA-RRGHI  386 (533)
T ss_pred             HHHHHHHcCCCeEEeeecccccccccccC-CCC---CCccCCCCccCCCceEEEEC-CCCCCCCCCCCCeeEEE-eecCc
Confidence            99999999889999999999986544431 111   122334  788999999999 78889999988  6665 66789


Q ss_pred             ccccCCCCC
Q 015325          400 MKGIFLPHF  408 (409)
Q Consensus       400 ~~gY~~~~~  408 (409)
                      +.|||+++.
T Consensus       387 ~~gy~~~~~  395 (533)
T PRK07798        387 PLGYYKDPE  395 (533)
T ss_pred             cccccCChh
Confidence            999999863

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.7e-44  Score=352.40  Aligned_cols=360  Identities=22%  Similarity=0.283  Sum_probs=281.9

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      ++..+.|.+.++.+    |+++|++++  +..+||+||.+++.++|..|.+ .|+++||+|+++++|+++++++++||++
T Consensus        18 ~~~~~~~~~~~~~~----~~~~a~~~~--~~~~ty~~L~~~~~~~a~~L~~-~g~~~g~~v~i~~~~~~~~~~~~lA~~~   90 (545)
T PRK08162         18 LTPLSFLERAAEVY----PDRPAVIHG--DRRRTWAETYARCRRLASALAR-RGIGRGDTVAVLLPNIPAMVEAHFGVPM   90 (545)
T ss_pred             CCHHHHHHHHHHHC----CCCeEEEEC--CeEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHHHHH
Confidence            78889999999888    999999987  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----C-CeEEEeCC--C-----------cchhhhcccC
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----K-HRTILIDS--P-----------EFDSMTMSWN  179 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~-~~~~~~~~--~-----------~~~~~~~~~~  179 (409)
                      +|++++|+++..+.+++.++++.+++++++++.+....+.+.    . .+.+.++.  .           .+.++.....
T Consensus        91 ~G~~~vpl~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (545)
T PRK08162         91 AGAVLNTLNTRLDAASIAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFLASGD  170 (545)
T ss_pred             hCcEEeccccccChHHHHHHHHhCCCeEEEEccchhhHHHHHHhhCCCCceEEEecCccccccCCCcccccHHHHhccCC
Confidence            999999999999999999999999999999998776554321    1 11222211  1           1222221111


Q ss_pred             CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhC
Q 015325          180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALM  259 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G  259 (409)
                      .. .......+..++++++|||||||.||+|+++|+++........... .+...+++++.+|++|.+++...+.....|
T Consensus       171 ~~-~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~-~~~~~~~~l~~~pl~h~~~~~~~~~~~~~~  248 (545)
T PRK08162        171 PD-FAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAW-GMPKHPVYLWTLPMFHCNGWCFPWTVAARA  248 (545)
T ss_pred             cc-ccccCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-CCCCCCeeEeccCcHhhhhHHHHHHHHHHc
Confidence            00 0011122345789999999999999999999998876665554444 567888999999999999884444455567


Q ss_pred             CeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecc
Q 015325          260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA  339 (409)
Q Consensus       260 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  339 (409)
                      ++.++...+++..+++.++++++|++.++|+++..|++........+.+++.++++|+.+++++.+.+++.  ++++++.
T Consensus       249 g~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~  326 (545)
T PRK08162        249 GTNVCLRKVDPKLIFDLIREHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI--GFDLTHV  326 (545)
T ss_pred             cEEEEeCCCCHHHHHHHHHHcCCeEEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh--CCceeec
Confidence            77777777899999999999999999999999999998755433445567778899999999999998874  8999999


Q ss_pred             cCcccccceecccCCCCC---------CCCCCccccccCCc-eEEEecCCCCCCCCCC--CcceEEEecCccccccCCCC
Q 015325          340 YGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGL-EAKIVDPETGDSLPPG--KEGELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       340 yG~tE~~~~~~~~~~~~~---------~~~~~s~G~p~~~~-~v~i~d~~~g~~~~~g--~~Gei~v~g~~v~~gY~~~~  407 (409)
                      ||+||+++.++.......         .....++|.+.+.. .++|+|++++++++.+  +.|||+++|+.++.|||+++
T Consensus       327 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~  406 (545)
T PRK08162        327 YGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNP  406 (545)
T ss_pred             ccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCCh
Confidence            999998654443211110         11234567776543 6889997789999763  46999999999999999986


Q ss_pred             C
Q 015325          408 F  408 (409)
Q Consensus       408 ~  408 (409)
                      .
T Consensus       407 ~  407 (545)
T PRK08162        407 K  407 (545)
T ss_pred             h
Confidence            4

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.6e-44  Score=349.39  Aligned_cols=332  Identities=27%  Similarity=0.310  Sum_probs=271.2

Q ss_pred             CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 015325           66 TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI  145 (409)
Q Consensus        66 ~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~  145 (409)
                      .++.+||.||.++++++|++|++ .|+++|++|+++++|+++++++++||+++|++++|+++..+.+++.++++++++++
T Consensus         8 ~~~~~ty~el~~~v~~~a~~L~~-~g~~~~~~V~i~~~~~~~~~~~~la~~~~G~~~~~l~~~~~~~~~~~~~~~~~~~~   86 (502)
T PRK08276          8 SGEVVTYGELEARSNRLAHGLRA-LGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAEIAYIVDDSGAKV   86 (502)
T ss_pred             CCcEEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHhcCcEEEecccccCHHHHHHHHhcCCCCE
Confidence            38999999999999999999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCchHHHHhhc------CCeEEEeCCC------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhc
Q 015325          146 AFATSSVVHKLAKL------KHRTILIDSP------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLT  213 (409)
Q Consensus       146 ii~~~~~~~~~~~~------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s  213 (409)
                      +++++.......+.      ..+.+.....      .+.+.....     ........++.++++|||||||.||+|.++
T Consensus        87 ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~i~~TSGtTG~PK~v~~~  161 (502)
T PRK08276         87 LIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQ-----PDTPIADETAGADMLYSSGTTGRPKGIKRP  161 (502)
T ss_pred             EEEccchhhHHHHHhhhccccccEEEEeCCCCCccccHHHHHhcC-----CCCCCCCCCcceEEEECCCCCCCCceEEEc
Confidence            99988766554322      2222222211      122211111     111123456789999999999999999988


Q ss_pred             cHHHHHHH------HHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEee
Q 015325          214 HRNLTAAV------ASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAV  287 (409)
Q Consensus       214 ~~~l~~~~------~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~  287 (409)
                      |.++....      ....... ....++++++..|++|.+++...+.++..|+++++.+.+++..+++.++++++|++.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~  240 (502)
T PRK08276        162 LPGLDPDEAPGMMLALLGFGM-YGGPDSVYLSPAPLYHTAPLRFGMSALALGGTVVVMEKFDAEEALALIERYRVTHSQL  240 (502)
T ss_pred             cCCcchhhhhHHhhhhhhhcc-cCCCCCEEEEcCcHHHHHHHHHHHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEe
Confidence            87654322      1122222 2357789999999999999877778999999999999899999999999999999999


Q ss_pred             chHHHHHHHhCCC--CCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccc
Q 015325          288 TPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG  365 (409)
Q Consensus       288 ~p~~l~~l~~~~~--~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G  365 (409)
                      +|+++..+.+...  ....+++++|.+++||++++.++.+++.+.+ +..+++.||+||++..++.. ........+++|
T Consensus       241 ~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~-~~~~~~~yG~tE~~~~~~~~-~~~~~~~~~~~G  318 (502)
T PRK08276        241 VPTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWW-GPIIHEYYASSEGGGVTVIT-SEDWLAHPGSVG  318 (502)
T ss_pred             hHHHHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHh-CcHhhhhcccccccceeEec-CccccccCCCcc
Confidence            9999999988654  2345678999999999999999999999988 88899999999998755442 222234567899


Q ss_pred             cccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       366 ~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +|+ +++++|+| +++++++.|+.|||+++|+.++.|||+++.
T Consensus       319 ~~~-~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~  359 (502)
T PRK08276        319 KAV-LGEVRILD-EDGNELPPGEIGTVYFEMDGYPFEYHNDPE  359 (502)
T ss_pred             eec-ccEEEEEC-CCCCCCcCCCceEEEEECCCccchhcCCHH
Confidence            999 88999999 789999999999999999999999999863

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=1e-43  Score=348.99  Aligned_cols=338  Identities=26%  Similarity=0.308  Sum_probs=274.3

Q ss_pred             cEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHH
Q 015325           59 VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQI  138 (409)
Q Consensus        59 ~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l  138 (409)
                      .|++++  ++.+||.||.++++++|++|.+ .|+++|++|+++++|+++++++++|++++|++++++++..+.+++.+++
T Consensus         3 ~~~~~~--~~~~Ty~el~~~~~~la~~l~~-~g~~~g~~V~v~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~~~~~l   79 (509)
T PRK12406          3 ATIISG--DRRRSFDELAQRAARAAGGLAA-LGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKPEEIAYIL   79 (509)
T ss_pred             eEEEEC--CeeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCcccCHHHHHHHH
Confidence            366666  7899999999999999999999 9999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCeEEEEcCchHHHHhhc---CCeEEEeCCC---------------------cchhhhcccCCcccccccccCCCCE
Q 015325          139 QLSNPVIAFATSSVVHKLAKL---KHRTILIDSP---------------------EFDSMTMSWNSKHELDRAKVCQSDV  194 (409)
Q Consensus       139 ~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~  194 (409)
                      +.+++++++++......+.+.   ....+.....                     ++++....     .........+++
T Consensus        80 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  154 (509)
T PRK12406         80 EDSGARVLIAHADLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTPPAGAIDWEGWLAQ-----QEPYDGPPVPQP  154 (509)
T ss_pred             hccCCcEEEEccchhhhhhhhhhcccceeecccccccccccccccccccCCCCccCHHHHhcc-----cCccCCCCCCCc
Confidence            999999999988766544321   1122211110                     01111100     001122346889


Q ss_pred             EEEEcCCCCCCCcchhhhccHHH---HHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHH
Q 015325          195 AAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK  271 (409)
Q Consensus       195 a~i~~TSGTTG~pK~v~~s~~~l---~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~  271 (409)
                      ++++|||||||.||+|.++|...   ..........+ +...++++++..|++|..+....+.++..|+++++.+.+++.
T Consensus       155 a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  233 (509)
T PRK12406        155 QSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIY-GLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPE  233 (509)
T ss_pred             eEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhc-CCCCCceEEEEeCCcccchHHHHHHHHhhheEEEEccCCCHH
Confidence            99999999999999999876543   33333344455 578899999999999988875666678899999998888999


Q ss_pred             HHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCccccccee
Q 015325          272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV  349 (409)
Q Consensus       272 ~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~  349 (409)
                      .+++.++++++|.+.++|+++..+++...  ....++++||.+++||+++++++.+++.+.+ ++.+++.||+||++..+
T Consensus       234 ~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~-~~~~~~~YG~tE~~~~~  312 (509)
T PRK12406        234 ELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWW-GPVIYEYYGSTESGAVT  312 (509)
T ss_pred             HHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHc-CCcEEeeccccccCceE
Confidence            99999999999999999999999987543  2345678999999999999999999999988 78999999999998755


Q ss_pred             cccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCcccc-ccCCCCC
Q 015325          350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK-GIFLPHF  408 (409)
Q Consensus       350 ~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~-gY~~~~~  408 (409)
                      +.. .......++++|+|+++++++|+| +++++++.|+.|||+++|+.++. ||++++.
T Consensus       313 ~~~-~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~  370 (509)
T PRK12406        313 FAT-SEDALSHPGTVGKAAPGAELRFVD-EDGRPLPQGEIGEIYSRIAGNPDFTYHNKPE  370 (509)
T ss_pred             ecC-cccccccCCCcCccCCCcEEEEEC-CCCCCCCCCCceEEEEECCccccccccCCch
Confidence            432 222334567899999999999999 78999999999999999998875 9998764

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]

Probab=100.00  E-value=1.4e-43  Score=322.89  Aligned_cols=357  Identities=20%  Similarity=0.238  Sum_probs=292.4

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.+.++++++    |+++|+++.+...++||+|+.++++++|+.|.. .|++.||+|++.|+|.++++.+++++++
T Consensus        77 ~ti~~~F~~~vrr~----p~k~aii~~~~~~~~Tf~e~~~~s~~~A~~~~~-~~l~~GD~VAL~men~pefv~lWlGLaK  151 (649)
T KOG1179|consen   77 RTIAELFLSQVRRQ----PDKPAIIYEGPFQSLTFAELDARSNRVANYLHA-EGLKAGDVVALLMENRPEFVALWLGLAK  151 (649)
T ss_pred             CcHHHHHHHHHHhC----CCccEEEEeCCCceeeHHHHHHHHHHHHHHHHH-hhcccCCEEEEecCCChhHHHHHHhHHh
Confidence            89999999999999    999999999666899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-------CCeEEEeCC----Ccchhhhcc---cCCcc-
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-------KHRTILIDS----PEFDSMTMS---WNSKH-  182 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-------~~~~~~~~~----~~~~~~~~~---~~~~~-  182 (409)
                      +|++...||+++..+.+.|.++.++++.+|++.+..+.+.+.       ++..+..+.    ...+++...   ....+ 
T Consensus       152 lGv~tA~iNtNlR~~~LlHsi~~s~aralv~~~el~~~~~e~~~~l~~~~i~~~~~~~~~~~~g~~~L~~~l~~~~~~~v  231 (649)
T KOG1179|consen  152 LGVITAFINTNLRGEPLLHSITVSGARALVVGPELLNALEEILPLLIKNGIHVFSLGPTSVPDGIESLLAKLSAAPKHPV  231 (649)
T ss_pred             hCceeeeeccccccchhhhhhhhcCceEEEECHHHHHHHHhcchhhhhccceEEecCCCCCCchHHHHHHhhcccccCCC
Confidence            999999999999999999999999999999999887666543       233333321    122232222   11111 


Q ss_pred             -cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCC
Q 015325          183 -ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALME  260 (409)
Q Consensus       183 -~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~  260 (409)
                       .......+-.++++.+|||||||.||+.++||..+..........+ +++++|+++..+|++|..+. .++..++..|+
T Consensus       232 p~~~~~~~~~~s~~lyIYTSGTTGLPKaAvith~r~~~~a~g~~~~~-g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~Ga  310 (649)
T KOG1179|consen  232 PVSTRSGLTFRSPLLYIYTSGTTGLPKAAVITHLRYLQGAAGFYYVF-GMTADDVVYTTLPLYHSAAGILGIGGCLLHGA  310 (649)
T ss_pred             CcccCCCccccceeEEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEcchhHHHHHHHHHHHHHHhcCc
Confidence             1222344557899999999999999999999999988887777888 89999999999999999888 89999999999


Q ss_pred             eEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceeccc
Q 015325          261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAY  340 (409)
Q Consensus       261 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~y  340 (409)
                      |+|+-.+|+..++|+.+.+|+||++.-...+++.|++.+......-..+|..+  |..+.++++++|.++|.-.+|.+.|
T Consensus       311 T~VlrkKFSAS~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~er~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~Y  388 (649)
T KOG1179|consen  311 TVVLRKKFSASNFWDDCRKYNVTVIQYIGELCRYLLNQPPSPEERQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFY  388 (649)
T ss_pred             eEEEecccchhhhHHHHHHhCCeeeehHHHHHHHHHcCCCChhhcCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEe
Confidence            99999999999999999999999999999999999999887766677888887  7779999999999999555699999


Q ss_pred             CcccccceecccCCCCCCCCCCcccc------ccCCceEEEecCCCCCC----------CCCCCcceEEEe--cCcc---
Q 015325          341 GLTESTAGVFRTVGPDECRRWGSTGR------LSAGLEAKIVDPETGDS----------LPPGKEGELSIR--GPTI---  399 (409)
Q Consensus       341 G~tE~~~~~~~~~~~~~~~~~~s~G~------p~~~~~v~i~d~~~g~~----------~~~g~~Gei~v~--g~~v---  399 (409)
                      |+||.........+     ..+.+|+      -+--+++--+|+++|++          |++||+|.++-+  -..-   
T Consensus       389 gaTEgn~~~~N~d~-----~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~  463 (649)
T KOG1179|consen  389 GATEGNSNLVNYDG-----RVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRS  463 (649)
T ss_pred             ccccCcceeeeecC-----ccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhh
Confidence            99998776655322     2333333      22233444446566655          589999977543  2233   


Q ss_pred             ccccCCCC
Q 015325          400 MKGIFLPH  407 (409)
Q Consensus       400 ~~gY~~~~  407 (409)
                      |.||.+++
T Consensus       464 F~GY~g~~  471 (649)
T KOG1179|consen  464 FLGYAGPK  471 (649)
T ss_pred             hccccCch
Confidence            88999854

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=7.8e-45  Score=329.80  Aligned_cols=372  Identities=24%  Similarity=0.268  Sum_probs=300.9

Q ss_pred             CCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeC----------CCC-----------ceeeHHHHHHHHHHHHHHhH
Q 015325           29 IDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINS----------VTG-----------LRVSFSEFTRRTNSLASYLQ   87 (409)
Q Consensus        29 ~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~----------~~~-----------~~~Ty~el~~~~~~la~~L~   87 (409)
                      +-.++-+..-|+.+++.+...++    .++.++-..          .+|           ..+||.|+++++..+|++|.
T Consensus        32 L~~~~~~g~~Tl~~~~~~~~~k~----g~~~~mGtR~li~~h~ek~~dGK~f~k~~Lg~Y~w~sy~ev~~~~~~~gsGL~  107 (678)
T KOG1180|consen   32 LVSPPNPGASTLYELFEECVKKF----GKKDAMGTRELIKEHEEKQVDGKTFEKYELGDYKWMSYNEVYERVHNFGSGLV  107 (678)
T ss_pred             ccCCCCCCcccHHHHHHHHHHhc----CCCccccHHHHHHHHhhccCCCeEEEEEeccceeeecHHHHHHHHHHHHHHHH
Confidence            33333344589999999999988    777777321          011           57899999999999999999


Q ss_pred             hccCCCCCCE-EEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CC
Q 015325           88 NVTRLSKNDT-AFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH  161 (409)
Q Consensus        88 ~~~gv~~g~~-V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~  161 (409)
                      + .|++++++ ++|+++.+.+|+.+++||.+.+...|.+...+..+.+.+-|+++++..+|++.+.++.+...     ..
T Consensus       108 ~-lG~k~~e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGeeal~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~v  186 (678)
T KOG1180|consen  108 K-LGLKPKETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEEALIHSLNETESTAIFTDSELLPKLKAPLKQAKTV  186 (678)
T ss_pred             H-hCCCCCCCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChhhhhhhhccccceEEEeCHHHHHHHHHHHhccCce
Confidence            9 99997777 99999999999999999999999999999999999999999999999999999888766521     22


Q ss_pred             e-EEEeCC--------------------CcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHH
Q 015325          162 R-TILIDS--------------------PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA  220 (409)
Q Consensus       162 ~-~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~  220 (409)
                      + ++..+.                    .+++++...+.... .+..+..++|+|+|||||||||.||||+++|.|+++.
T Consensus       187 k~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~-~~~~~P~p~Dia~IMYTSGSTG~PKGVml~H~NiVA~  265 (678)
T KOG1180|consen  187 KHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENE-IPPHPPKPSDIACIMYTSGSTGLPKGVMLTHSNIVAG  265 (678)
T ss_pred             eEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCC-CCCCCCCCCceEEEEEcCCCCCCCceEEEecccHHhh
Confidence            2 223331                    11444444444432 2333447799999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHH--------HHHHHHHhcceeEeechHHH
Q 015325          221 VASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKM--------MLKAVEEFRVTHAAVTPPIV  292 (409)
Q Consensus       221 ~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~--------~~~~i~~~~~t~l~~~p~~l  292 (409)
                      +..+....+.+.+.|+++..+|+.|++.+..-+.++.-|+.+-..+..+..+        --..+...|+|++.++|+.+
T Consensus       266 ~~G~~~~v~~lg~~D~yi~yLPLAHIlEl~aE~~~ft~G~~iGY~S~~TLtdts~ki~kg~kGD~~~lkPTiM~~VpAV~  345 (678)
T KOG1180|consen  266 VTGVGENVPELGPKDRYIAYLPLAHILELTAELVCFTWGGRIGYSSPLTLTDTSSKIKKGCKGDLTELKPTIMAAVPAVM  345 (678)
T ss_pred             hhhhcccCcccCCCceEEEechHHHHHHHHHHHHHHhhCCEeecCCcceecccchhhccCCcCccccccchhhhhhHHHH
Confidence            9999888878999999999999999999988899999999998775422211        22335678999999999999


Q ss_pred             HHHHhCCCCC-----------------------C---CC----------------CCCcceeeecCCCCCHHHHHHHHHh
Q 015325          293 VAMSKGGSTD-----------------------G---YD----------------LSSLETVACGAAPLGKDTIMAFASK  330 (409)
Q Consensus       293 ~~l~~~~~~~-----------------------~---~~----------------l~~Lr~v~~~G~~~~~~~~~~~~~~  330 (409)
                      +++.+.-..+                       .   ..                =.+||++++||++++++..+++.-+
T Consensus       346 drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr~~lGG~lR~~LsGGapLS~dtQrF~nic  425 (678)
T KOG1180|consen  346 DRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIRALLGGNLRYILSGGAPLSPDTQRFMNIC  425 (678)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            8765532111                       0   00                0479999999999999999999999


Q ss_pred             CCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCC--cceEEEecCccccccCCCCC
Q 015325          331 FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK--EGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       331 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~--~Gei~v~g~~v~~gY~~~~~  408 (409)
                      + .+++.++||.||+++..+.  ....+...+.+|.|++-++++++|-++|.-.+.+.  .|||+|+|+++..|||+||.
T Consensus       426 ~-C~Pv~qGYGLTEtca~~tv--~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~PPrGEI~i~G~~vt~gY~kn~e  502 (678)
T KOG1180|consen  426 F-CCPVLQGYGLTETCAAATV--LEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKPPRGEILIGGPNVTMGYYKNEE  502 (678)
T ss_pred             c-cccccccccccchhcccEe--cChhhcccccccCCccceEEEEEEhhhcCccCCCCCCCceEEecCCccChhhhCChh
Confidence            9 8899999999999988776  34455667899999999999999988887777666  89999999999999999986


Q ss_pred             C
Q 015325          409 E  409 (409)
Q Consensus       409 ~  409 (409)
                      +
T Consensus       503 k  503 (678)
T KOG1180|consen  503 K  503 (678)
T ss_pred             h
Confidence            4

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.4e-43  Score=350.88  Aligned_cols=353  Identities=22%  Similarity=0.284  Sum_probs=281.8

Q ss_pred             CHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHh
Q 015325           39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL  118 (409)
Q Consensus        39 ~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~  118 (409)
                      ++.+.|...+..+    |+++++.+.+....+||.||+++++++|++|.+ .|+++||+|+++++|+++++++++||+++
T Consensus         3 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ty~el~~~v~~~a~~L~~-~g~~~gd~V~l~~~~~~~~~~~~la~~~~   77 (545)
T PRK07768          3 RFTEKMYANARTS----PRGMVTGEPDAPVRHTWGEVHERARRIAGGLAA-AGVGPGDAVAVLAGAPVEIAPTAQGLWMR   77 (545)
T ss_pred             hHHHHHHHHhhCC----CcceEEecCCCceEecHHHHHHHHHHHHHHHHH-hCCCCCCEEEEECCCchHHHHHHHHHHHc
Confidence            4778888888888    999999887667889999999999999999999 99999999999999999999999999999


Q ss_pred             CCeEccCCCCCCHHHH-------HHHHhhcCCeEEEEcCchHHHHhhc---CCeEEEeCCCcchhhhcccCCcccccccc
Q 015325          119 GVIISPANPVNTESEI-------SRQIQLSNPVIAFATSSVVHKLAKL---KHRTILIDSPEFDSMTMSWNSKHELDRAK  188 (409)
Q Consensus       119 G~~~v~l~~~~~~~~l-------~~~l~~~~~~~ii~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      |++++++++..+.+++       ..+++.++++.+++++.........   ...++     .++++.....    .....
T Consensus        78 g~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~~~~  148 (545)
T PRK07768         78 GASLTMLHQPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVL-----TVADLLAADP----IDPVE  148 (545)
T ss_pred             CccccccCCCCCcchhHHHHHHHHHHHHhCCCCEEEecchhhhhhhhhcccCCcee-----ehhhhcccCC----CCcCC
Confidence            9999999988775544       4567788999999987654433221   11221     2223322111    11223


Q ss_pred             cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCC-CEEEEeCchhhHHhH-HHHHHHHHhCCeEEEec
Q 015325          189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP-AVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQ  266 (409)
Q Consensus       189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~-d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~  266 (409)
                      ..++++++++|||||||.||+|+++|+++...+......+ ++... |++++.+|++|.+++ ..++.++..|+++++..
T Consensus       149 ~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~v~~~  227 (545)
T PRK07768        149 TGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-EFDVETDVMVSWLPLFHDMGMVGFLTVPMYFGAELVKVT  227 (545)
T ss_pred             CCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-CCCCCCceeEEeCCCccchHHHHHHHHHHHCCceEEEeC
Confidence            4578999999999999999999999999998887777766 56655 899999999999998 56778899999998885


Q ss_pred             C----CCHHHHHHHHHHhcceeEeechHHHHHHHhCC----CCCCCCCCCcceeeecCCCCCHHHHHHHHHh---C--CC
Q 015325          267 R----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG----STDGYDLSSLETVACGAAPLGKDTIMAFASK---F--PK  333 (409)
Q Consensus       267 ~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~----~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~---~--~~  333 (409)
                      .    .++..+...+++++++++...|..+..+.+..    .....++++||.++++|+++++.+.++|.+.   +  +.
T Consensus       228 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~  307 (545)
T PRK07768        228 PMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRP  307 (545)
T ss_pred             HHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCc
Confidence            4    26788999999999999988787776655422    1224567899999999999999999999874   4  22


Q ss_pred             CceecccCcccccceecccCCCC------------------------CCCCCCccccccCCceEEEecCCCCCCCCCCCc
Q 015325          334 VVLVQAYGLTESTAGVFRTVGPD------------------------ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE  389 (409)
Q Consensus       334 ~~i~~~yG~tE~~~~~~~~~~~~------------------------~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~  389 (409)
                      ..+++.||+||++..++......                        ......++|+|+++++++|+| ++|+++++|+.
T Consensus       308 ~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~-~~~~~~~~g~~  386 (545)
T PRK07768        308 EAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVD-EDGQVLPPRGV  386 (545)
T ss_pred             ccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEEC-CCCCCCCCCCE
Confidence            35999999999987554322110                        012346899999999999999 88999999999


Q ss_pred             ceEEEecCccccccCCCC
Q 015325          390 GELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       390 Gei~v~g~~v~~gY~~~~  407 (409)
                      |||+++|+.++.|||+++
T Consensus       387 Gel~v~~~~~~~gy~~~~  404 (545)
T PRK07768        387 GVIELRGESVTPGYLTMD  404 (545)
T ss_pred             EEEEEccCcccccccCCC
Confidence            999999999999999764

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.9e-43  Score=365.06  Aligned_cols=345  Identities=15%  Similarity=0.141  Sum_probs=269.8

Q ss_pred             CCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      ...+++.++|.+.++++    ||++|++++  ++++||+||.++++++|+.|++ .|+++||+|+|+++|+++++++++|
T Consensus       444 ~~~~sl~~ll~~~a~~~----pd~~Al~~~--~~~lTY~eL~~ra~rlA~~L~~-~Gv~~Gd~VaI~~~n~~e~v~a~lA  516 (994)
T PRK07868        444 HTRISLGRIIAEQARDA----PKGEFLLFD--GRVHTYEAVNRRINNVVRGLIA-VGVRQGDRVGVLMETRPSALVAIAA  516 (994)
T ss_pred             CCCccHHHHHHHHHHHC----CCCeEEEeC--CceeeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHH
Confidence            34589999999999998    999999987  7899999999999999999999 9999999999999999999999999


Q ss_pred             HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCc--------chhhhcc---cCCccc
Q 015325          115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPE--------FDSMTMS---WNSKHE  183 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~---~~~~~~  183 (409)
                      |+++|++++|++|.   .++.++++.++++++|++.+....+......++.++...        .......   ......
T Consensus       517 ~~~aGav~vpl~p~---~~l~~il~~s~~~~li~~~~~~~~~~~~~~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (994)
T PRK07868        517 LSRLGAVAVLMPPD---TDLAAAVRLGGVTEIITDPTNLEAARQLPGRVLVLGGGESRDLDLPDDADVIDMEKIDPDAVE  593 (994)
T ss_pred             HHhcCCEEEEeCCc---hhHHHHHhccCCeEEEEChHHHHHHHhcCceEEEecCCccccccCCcchhhhhhhhcCccccc
Confidence            99999999999985   689999999999999999877665554444455443210        0000000   000000


Q ss_pred             c----cccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHH-HHHHHHh
Q 015325          184 L----DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAAL  258 (409)
Q Consensus       184 ~----~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~  258 (409)
                      .    ......++++++|+|| ||||.||++.++|.+...........+ .+.++|++++..|++|.+++.. ++.++..
T Consensus       594 ~~~~~~~~~~~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~g  671 (994)
T PRK07868        594 LPGWYRPNPGLARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-ALDRRDTVYCLTPLHHESGLLVSLGGAVVG  671 (994)
T ss_pred             CCcccCCCCCCCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-CCCCCCeEEEecChHHHhHHHHHHHHHhcc
Confidence            0    0011235789999998 577777777778776655444444455 5788999999999999999954 4555666


Q ss_pred             CCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325          259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ  338 (409)
Q Consensus       259 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  338 (409)
                      |+++++.+.++++.+++.|+++++|+++++|+++..|++.......++++||.++  |+.+++++.++|++.|+++++++
T Consensus       672 G~~vvl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~  749 (994)
T PRK07868        672 GSRIALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVE  749 (994)
T ss_pred             ceEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe--cCCCCHHHHHHHHHHhCchheee
Confidence            6666677789999999999999999999999999999987544445678899876  34499999999999997789999


Q ss_pred             ccCcccccceecccCCCCCCCCCCccccccCCc-eEEEe-----------cCCCC--CCCCCCCcceEEEecCc
Q 015325          339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGL-EAKIV-----------DPETG--DSLPPGKEGELSIRGPT  398 (409)
Q Consensus       339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~-~v~i~-----------d~~~g--~~~~~g~~Gei~v~g~~  398 (409)
                      .||+||++.....   . ....++++|+|+||+ +++|.           | ++|  ++++.|+.|||+++|++
T Consensus       750 ~YG~TE~~~~~~~---~-~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d-~~G~~~~~~~ge~Gel~~~~~~  818 (994)
T PRK07868        750 FFATTDGQAVLAN---V-SGAKIGSKGRPLPGAGRVELAAYDPEHDLILED-DRGFVRRAEVNEVGVLLARARG  818 (994)
T ss_pred             eeecccccccccc---c-CCCCCcccCCccCCCCceeEEEecCcCCceeec-CCceEEEcCCCCceEEEEecCC
Confidence            9999998654332   1 124568999999998 67664           4 566  67889999999999984

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=5.8e-43  Score=339.07  Aligned_cols=320  Identities=20%  Similarity=0.236  Sum_probs=264.6

Q ss_pred             CHHHHHhhc-cCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           39 SAVDYVSSL-RATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        39 ~~~~~l~~~-~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      ++.+++... +.++    |+++|++++  ++.+||.||.++++++|+.|.+ .|+++|++|+++++|+++++++++||++
T Consensus         3 ~~~~~~~~~~a~~~----~~~~a~~~~--~~~~ty~el~~~~~~~a~~L~~-~g~~~~~~v~l~~~~~~~~~~~~la~~~   75 (458)
T PRK09029          3 IFSDWPWRHWAQVR----PQAIALRLN--DEVLTWQQLCARIDQLAAGFAQ-QGVVEGSGVALRGKNSPETLLAYLALLQ   75 (458)
T ss_pred             hhhcChHHHHHHhC----CCceeeecC--CcceeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence            344445444 4556    999999987  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI  197 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  197 (409)
                      +|++++++++..+.+++.++++++++++++++.+... ....  ...     .+.   ...    ........+++++++
T Consensus        76 ~G~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~--~~~-----~~~---~~~----~~~~~~~~~~~~a~i  140 (458)
T PRK09029         76 CGARVLPLNPQLPQPLLEELLPSLTLDFALVLEGENT-FSAL--TSL-----HLQ---LVE----GAHAVAWQPQRLATM  140 (458)
T ss_pred             cCCEEeecCCCCCHHHHHHHHHhcCCCEEEEcCcccc-hhhc--ccc-----ccc---ccc----ccCcccCCCCCeEEE
Confidence            9999999999999999999999999999999875432 1110  000     000   000    111234467889999


Q ss_pred             EcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHH
Q 015325          198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV  277 (409)
Q Consensus       198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i  277 (409)
                      +|||||||.||+|.+||++++..+......+ ...++++++...|++|.+++..++.++..|+++++.+.   ..++..+
T Consensus       141 ~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~h~~g~~~~~~~l~~G~~v~~~~~---~~~~~~i  216 (458)
T PRK09029        141 TLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-PFTAQDSWLLSLPLFHVSGQGIVWRWLYAGATLVVRDK---QPLEQAL  216 (458)
T ss_pred             EECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-CCCccceEEEecCcHhhhhhHHHHHHHhCCceEEeCCh---HHHHHHH
Confidence            9999999999999999999999888887777 68889999999999999998777888999999998864   4566666


Q ss_pred             HHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCC
Q 015325          278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE  357 (409)
Q Consensus       278 ~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~  357 (409)
                        .++|.+.++|+++..++.....    ..+||.+++||+++++.+.+++.+.  +.++++.||+||++...+...    
T Consensus       217 --~~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~--g~~~~~~YG~tE~~~~~~~~~----  284 (458)
T PRK09029        217 --AGCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ--GIRCWCGYGLTEMASTVCAKR----  284 (458)
T ss_pred             --hhceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc--CCcEeccccccccCcceeccC----
Confidence              4899999999999999876432    3479999999999999999999864  899999999999986554321    


Q ss_pred             CCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       358 ~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .....++|+|+++++++|+|            |||+++|+.++.|||+++.
T Consensus       285 ~~~~~~~G~~~~~~~~~i~~------------gel~v~g~~~~~gY~~~~~  323 (458)
T PRK09029        285 ADGLAGVGSPLPGREVKLVD------------GEIWLRGASLALGYWRQGQ  323 (458)
T ss_pred             CCCCCCCCCCCCCCEEEEeC------------CEEEEecCceeeeeecCcc
Confidence            12235699999999999987            8999999999999998764

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=2.6e-43  Score=339.50  Aligned_cols=301  Identities=15%  Similarity=0.168  Sum_probs=244.7

Q ss_pred             ceeeHHHHHHHHHHHHHHhHhccCC-CCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEE
Q 015325           68 LRVSFSEFTRRTNSLASYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA  146 (409)
Q Consensus        68 ~~~Ty~el~~~~~~la~~L~~~~gv-~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  146 (409)
                      .-+.|+||.++++++|+.|++ .|+ ++|++|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++
T Consensus        18 ~~~~~~el~~~~~~~a~~L~~-~g~~~~~~~V~i~~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~~~~~~~~~~~~~~   96 (452)
T PRK07445         18 IGYNSQRFYQLAQQLYLQLQQ-LATPRTPPKILLAESDPLQFLAAFLAAVAAGCPVFLANPHWGQQEWQQVLNLVQPDQI   96 (452)
T ss_pred             eecChHHHHHHHHHHHHHHHH-hcCCCCCCeEEEecCCCHHHHHHHHHHHHhCcEEEeeccCCCHHHHHHHHHhcCCCEE
Confidence            357899999999999999999 988 579999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc
Q 015325          147 FATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA  226 (409)
Q Consensus       147 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~  226 (409)
                      +++.+.....         ..     ..        ........++++++++|||||||.||+|++||+++.........
T Consensus        97 i~~~~~~~~~---------~~-----~~--------~~~~~~~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~  154 (452)
T PRK07445         97 WGLDQLKLSH---------PP-----PL--------PSQGILPNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQR  154 (452)
T ss_pred             EecCcccccc---------CC-----CC--------CccccCCCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHH
Confidence            9876532110         00     00        00011234688999999999999999999999999888777766


Q ss_pred             cCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCC
Q 015325          227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL  306 (409)
Q Consensus       227 ~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l  306 (409)
                      .+ ...+ ++.++.+|++|.+|+..++.++..|+++++.+..+.........++++|++.++|+++..+++..   ...+
T Consensus       155 ~~-~~~~-~~~~~~~Pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~~---~~~l  229 (452)
T PRK07445        155 YF-QLQQ-VNSFCVLPLYHVSGLMQFMRSFLTGGKLVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQLR---PQWL  229 (452)
T ss_pred             Hh-cCCC-CceEeccCchhhhhHHHHHHHHHcCCeEEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhhC---hhhh
Confidence            65 4444 46788999999999988889999999999986432233334455789999999999999998732   2346


Q ss_pred             CCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCC
Q 015325          307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP  386 (409)
Q Consensus       307 ~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~  386 (409)
                      ++||.+++||+++++++.+++++ + ++++++.||+||++..++............++|+|+|+++++|+         .
T Consensus       230 ~~l~~i~~gG~~l~~~~~~~~~~-~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---------~  298 (452)
T PRK07445        230 AQFRTILLGGAPAWPSLLEQARQ-L-QLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---------A  298 (452)
T ss_pred             hcceEEEECCccCCHHHHHHHHh-c-CCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---------C
Confidence            89999999999999999999876 4 88999999999997654432221112345789999999999997         3


Q ss_pred             CCcceEEEecCccccccCCCC
Q 015325          387 GKEGELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       387 g~~Gei~v~g~~v~~gY~~~~  407 (409)
                      |+.|||+|+|++++.|||+++
T Consensus       299 g~~Gel~v~g~~~~~gY~~~~  319 (452)
T PRK07445        299 NQTGNITIQAQSLALGYYPQI  319 (452)
T ss_pred             CCcceEEEeCCccchhhcCCc
Confidence            678999999999999999865

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.1e-42  Score=338.16  Aligned_cols=303  Identities=18%  Similarity=0.217  Sum_probs=235.7

Q ss_pred             cCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCch------HHHHh----hcCCeEEEeC--C-
Q 015325          102 STNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV------VHKLA----KLKHRTILID--S-  168 (409)
Q Consensus       102 ~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~------~~~~~----~~~~~~~~~~--~-  168 (409)
                      ++|+++++++++||+++|++++|+++.++.+++.+++++++++++|+++..      ...+.    ......+.+.  . 
T Consensus         1 ~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~el~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (499)
T PLN03051          1 MPMTVDAVIIYLAIVLAGCVVVSVADSFSAKEIATRLDISGAKGVFTQDVVLRGGRALPLYSKVVEAAPAKAIVLPAAGE   80 (499)
T ss_pred             CCCcHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCceEEEecCceeeCCeeecchhhhhhcccceEEEEeccCc
Confidence            589999999999999999999999999999999999999999999998642      11111    1111222221  0 


Q ss_pred             ----------CcchhhhcccCCc----c-cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCC
Q 015325          169 ----------PEFDSMTMSWNSK----H-ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS  233 (409)
Q Consensus       169 ----------~~~~~~~~~~~~~----~-~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~  233 (409)
                                ..+.++.......    . ........++++++|+|||||||.||||++||++++.........+ ++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~  159 (499)
T PLN03051         81 PVAVPLREQDLSWCDFLGVAAAQGSVGGNEYSPVYAPVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM-DIQP  159 (499)
T ss_pred             ccCCccccCcccHHHHHhhhccccccccccCCcccCCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc-CCCC
Confidence                      1223322111000    0 0011123468999999999999999999999999877665555555 5788


Q ss_pred             CCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC-CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcc
Q 015325          234 PAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLE  310 (409)
Q Consensus       234 ~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr  310 (409)
                      +|++++..|++|.+++..++.++..|+++++.+. +++..+++.|+++++|++.++|+++..|++...  ....++++||
T Consensus       160 ~d~~l~~~pl~h~~g~~~~~~~l~~G~t~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr  239 (499)
T PLN03051        160 GDVVCWPTNLGWMMGPWLLYSAFLNGATLALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLR  239 (499)
T ss_pred             CCEEEEccCcceeeehHHHHHHHHcCCEEEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhhe
Confidence            9999999999999998778899999999999874 788999999999999999999999999987643  3345678999


Q ss_pred             eeeecCCCCCHHHHHHHHHhCC-CCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCC--
Q 015325          311 TVACGAAPLGKDTIMAFASKFP-KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG--  387 (409)
Q Consensus       311 ~v~~~G~~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g--  387 (409)
                      .+++||+++++++.+++++.++ ++++++.||+||+++.++... .......+++|+|+++++++|+| ++|++++.|  
T Consensus       240 ~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~ivd-~~g~~~~~g~~  317 (499)
T PLN03051        240 VFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISST-LLQPQAPGAFSTASLGTRFVLLN-DNGVPYPDDQP  317 (499)
T ss_pred             EEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeeccc-ccCCCCCccccCCCCCceEEEEC-CCCCCCCCCCC
Confidence            9999999999999988877431 478999999999865443211 11233567899999999999999 899999998  


Q ss_pred             CcceEEEecCcc--ccccCCCC
Q 015325          388 KEGELSIRGPTI--MKGIFLPH  407 (409)
Q Consensus       388 ~~Gei~v~g~~v--~~gY~~~~  407 (409)
                      +.|||+++||.+  +.||||++
T Consensus       318 ~~Gel~v~g~~~~~~~gy~~~~  339 (499)
T PLN03051        318 CVGEVALAPPMLGASDRLLNAD  339 (499)
T ss_pred             cceEEEEecCcCCCCccccCCc
Confidence            489999999976  58999865

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2e-41  Score=326.57  Aligned_cols=310  Identities=24%  Similarity=0.316  Sum_probs=255.8

Q ss_pred             eHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcC
Q 015325           71 SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATS  150 (409)
Q Consensus        71 Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~  150 (409)
                      ||+||.++++++|+.|.+ .|+++||+|+++++|+++++++++||+++|++++++++..+.+++..++++.+++++++++
T Consensus         1 Ty~~l~~~~~~~a~~l~~-~g~~~gd~v~i~~~~~~~~~~~~la~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   79 (436)
T TIGR01923         1 TWQDLDCEAAHLAKALKA-QGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTENERTNQLEDLDVQLLLTDS   79 (436)
T ss_pred             CHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEcCCCHHHHHHHHHHHhcCcEEEecCcCCCHHHHHHHHHhcCCCEEEEcC
Confidence            799999999999999999 9999999999999999999999999999999999999999999999999999999999987


Q ss_pred             chHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCC
Q 015325          151 SVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK  230 (409)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~  230 (409)
                      ......       +.  ...+..+....... .........+++++++|||||||.||+|.++|+++...+......+ +
T Consensus        80 ~~~~~~-------~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-~  148 (436)
T TIGR01923        80 LLEEKD-------FQ--ADSLDRIEAAGRYE-TSLSASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL-G  148 (436)
T ss_pred             cccccc-------ee--ecchHhhhhccccc-ccccccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhc-C
Confidence            632110       00  00111111111100 1112234567899999999999999999999999999888888887 7


Q ss_pred             CCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcc
Q 015325          231 RVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLE  310 (409)
Q Consensus       231 ~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr  310 (409)
                      .++.|++++..|++|.+++..++.++..|+++++.+.++  .++..++++++|++.++|+++..+.+.....    +++|
T Consensus       149 ~~~~d~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~--~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~----~~l~  222 (436)
T TIGR01923       149 FTEDDNWLLSLPLYHISGLSILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISLVPTQLNRLLDEGGHN----ENLR  222 (436)
T ss_pred             CCCCceEEEccCcHhHHHHHHHHHHHhcCceEEecchHH--HHHHHHHHhCCeEEEeHHHHHHHHHhCcCCC----CceE
Confidence            889999999999999999988899999999999997653  9999999999999999999999999875322    6899


Q ss_pred             eeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcc
Q 015325          311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEG  390 (409)
Q Consensus       311 ~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~G  390 (409)
                      .++++|+++++++.+.+++.  ++.+++.||+||+++..+...... .....++|.|+++++++|.+.+.      ++.|
T Consensus       223 ~~~~~G~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~~~~~------~~~G  293 (436)
T TIGR01923       223 KILLGGSAIPAPLIEEAQQY--GLPIYLSYGMTETCSQVTTATPEM-LHARPDVGRPLAGREIKIKVDNK------EGHG  293 (436)
T ss_pred             EEEECCCCCCHHHHHHHHHh--CCceeeEecCCccchhccCcCccc-cccccCCCccCCCcEEEEEeCCC------CCce
Confidence            99999999999999988764  899999999999987655432222 22223599999999999944132      2779


Q ss_pred             eEEEecCccccccCCCC
Q 015325          391 ELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       391 ei~v~g~~v~~gY~~~~  407 (409)
                      ||+++|+.++.|||+++
T Consensus       294 el~v~~~~~~~gy~~~~  310 (436)
T TIGR01923       294 EIMVKGANLMKGYLYQG  310 (436)
T ss_pred             EEEEECCccchhhCCCh
Confidence            99999999999999965

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]

Probab=100.00  E-value=2.5e-40  Score=314.38  Aligned_cols=373  Identities=21%  Similarity=0.237  Sum_probs=300.1

Q ss_pred             CCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCC----CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEc
Q 015325           27 PPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT----GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLS  102 (409)
Q Consensus        27 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~----~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~  102 (409)
                      +...|.+ +.-.|+++.+.++.....  .+++++++....    ...+||.|+.+++.++|..|.+ +|+++||+|++++
T Consensus        53 ~~~~w~~-g~~ln~~~n~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~t~~el~~~v~~~a~~l~~-~g~~kGD~V~~~m  128 (626)
T KOG1175|consen   53 PFTKWFP-GAFLNACYNCLDRHIKEK--GGDKVAIIFEGNEGGDTEVWTYKELLDQVVRLANVLRK-CGLKKGDTVAIYM  128 (626)
T ss_pred             CCccccc-cchhhhhHhhhhhhhhhc--CCCCcEEEEEecCCCceEEEEHHHHHHHHHHHHHHHHh-cCCCCCcEEEEec
Confidence            4444444 455899988888875443  278888886522    2458999999999999999997 9999999999999


Q ss_pred             CCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCC-------------------eE
Q 015325          103 TNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-------------------RT  163 (409)
Q Consensus       103 ~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-------------------~~  163 (409)
                      |+.++++++++||.++|++.+++-...++.++...++.++++++++.+......+....                   ..
T Consensus       129 Pm~~e~~ia~lA~~r~Gai~~~v~~~fs~~~l~~Rl~~~~~k~i~t~d~~~~~~k~i~~~~~~~~a~~~~~~~~~~~~~~  208 (626)
T KOG1175|consen  129 PMIPEAVIAMLACARIGAIHSSVFAGFSAKELLDRLQDSKAKVIITQDVVARGGKSINLKCIVLEALLLVSDKSRPVWLD  208 (626)
T ss_pred             cCChHHHHHHHHHhhcCeEEEEeeccCCHHHHHHHHHhcCCCEEEEEeeeccCCCccchhhhHHHHhhccccccccccee
Confidence            99999999999999999999999999999999999999999999998754332221100                   00


Q ss_pred             -EEe--C-CCcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHH-hhccCCCCCCCCEEE
Q 015325          164 -ILI--D-SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPKRVSPAVML  238 (409)
Q Consensus       164 -~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~~d~~l  238 (409)
                       +..  . ...|+.++.....  .......+.+|+.+|+|||||||.||++.+++......... ...++ ..++.|++.
T Consensus       209 ~~~~~~~~d~~~~~~~~~a~~--~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~-d~q~~dv~~  285 (626)
T KOG1175|consen  209 LIVSRRNRDLFWSLELKKASP--EHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF-DLQPSDVLW  285 (626)
T ss_pred             eEEecccccccHHHHhhhcCC--CCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec-cCCCcceEE
Confidence             000  0 1123333233222  22345567789999999999999999999998876554444 44455 799999999


Q ss_pred             EeCchhhHHhH-HHHHHHHHhCCeEEEecC--CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceee
Q 015325          239 FTMPYFHIYGL-FFCFRAAALMETAVVMQR--FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVA  313 (409)
Q Consensus       239 ~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~--~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~  313 (409)
                      +.....++.+. +.++.+|..|+++++.+.  +++..+++.+.++++|.++..|+.++.|.+...  ...+++++||.+.
T Consensus       286 ~~~d~GWi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~  365 (626)
T KOG1175|consen  286 CASDLGWITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCG  365 (626)
T ss_pred             EecccCeeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEe
Confidence            99999999999 567889999999999963  599999999999999999999999998877655  3445567899999


Q ss_pred             ecCCCCCHHHHHHHHHhCCCC-ceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCC-Ccce
Q 015325          314 CGAAPLGKDTIMAFASKFPKV-VLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPG-KEGE  391 (409)
Q Consensus       314 ~~G~~~~~~~~~~~~~~~~~~-~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g-~~Ge  391 (409)
                      +.||++.++..+.+.+.+ +. +|.+.||.||+|+.++.........++++.++|.+|+.+.|.| ++|++++.+ +.|+
T Consensus       366 S~Gepi~~~~~ew~~~~~-~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~d-e~g~~~~~~~~~G~  443 (626)
T KOG1175|consen  366 SVGEPINPEAWEWWKRVT-GLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILD-ENGNELPPSTGNGE  443 (626)
T ss_pred             ecCccCCcchHHHHHHhc-CccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEEC-CCCCCcCCCCceeE
Confidence            999999999999999999 66 6999999999998776533222257889999999999999999 799999987 8999


Q ss_pred             EEEecC---ccccccCCCCC
Q 015325          392 LSIRGP---TIMKGIFLPHF  408 (409)
Q Consensus       392 i~v~g~---~v~~gY~~~~~  408 (409)
                      |+++.+   +.+++||+|++
T Consensus       444 l~~~~~~P~~~~r~~~~n~e  463 (626)
T KOG1175|consen  444 LRLKPPWPPGMFRTLWGNHE  463 (626)
T ss_pred             EEEeCCCCccccccccCCHH
Confidence            999983   77999999975

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.8e-40  Score=312.57  Aligned_cols=287  Identities=15%  Similarity=0.142  Sum_probs=246.7

Q ss_pred             EEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhh
Q 015325           61 LINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQL  140 (409)
Q Consensus        61 ~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~  140 (409)
                      ++++  ++++||.||.++++++|+.|.  .|+++|++|+++++|+.+++++++|++++|++++|+++..+.+++..++++
T Consensus         2 ~~~~--~~~~ty~el~~~~~~~a~~l~--~~~~~g~~V~i~~~~~~~~~~~~la~~~~G~~~v~l~~~~~~~~~~~~~~~   77 (414)
T PRK08308          2 LIVN--DEEYSKSDFDLRLQRYEEMEQ--FQEAAGNRFAVCLKDPFDIITLVFFLKEKGASVLPIHPDTPKEAAIRMAKR   77 (414)
T ss_pred             eEec--CceecHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCChHHHHHHHHHHHCCeEEEecCCCCCHHHHHHHHHh
Confidence            5566  789999999999999999985  589999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHH
Q 015325          141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA  220 (409)
Q Consensus       141 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~  220 (409)
                      ++++.+++++....           ..     .            .....++++++++|||||||.||+|.+||+++...
T Consensus        78 ~~~~~~i~~~~~~~-----------~~-----~------------~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~  129 (414)
T PRK08308         78 AGCHGLLYGESDFT-----------KL-----E------------AVNYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDRE  129 (414)
T ss_pred             CCCCEEEecCcccc-----------cc-----c------------CCCCCCCCceEEEECCCCCCCCcEEEEehHhHHHH
Confidence            99999998762110           00     0            01234678999999999999999999999999988


Q ss_pred             HHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCC
Q 015325          221 VASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG  299 (409)
Q Consensus       221 ~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~  299 (409)
                      +......+ ....+|+++...|++|.+++ ..++.++..|+++++.+.+++..+++.++++++|.+.++|+.+..+.+..
T Consensus       130 ~~~~~~~~-~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~  208 (414)
T PRK08308        130 IEAYNEAL-NCEQDETPIVACPVTHSYGLICGVLAALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLL  208 (414)
T ss_pred             HHHHHHhh-CCCcccEEEEecCcHHHHHHHHHHHHHHHcCCEEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcC
Confidence            88777777 57888999999999999998 77899999999999999899999999999999999999999999998764


Q ss_pred             CCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCC
Q 015325          300 STDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPE  379 (409)
Q Consensus       300 ~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~  379 (409)
                      ..    ..+++.++++|+++++++.++|++.  +.++++.||+||+++....    .......++|+|+|++++++.+ +
T Consensus       209 ~~----~~~l~~~~~~G~~l~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~----~~~~~~~~~G~p~~~~~~~~~~-~  277 (414)
T PRK08308        209 PG----TFQFHAVMTSGTPLPEAWFYKLRER--TTYMMQQYGCSEAGCVSIC----PDMKSHLDLGNPLPHVSVSAGS-D  277 (414)
T ss_pred             Cc----cccccEEEEccCCCCHHHHHHHHHh--CChhhhccCccccCCeeec----CCCCCCCccCccCCCeEEEEec-C
Confidence            32    1368899999999999999999987  5689999999999764432    1223457899999999999986 3


Q ss_pred             CCCCCCCCCcceEEEecC
Q 015325          380 TGDSLPPGKEGELSIRGP  397 (409)
Q Consensus       380 ~g~~~~~g~~Gei~v~g~  397 (409)
                            +|+.|||++++.
T Consensus       278 ------~~~~gel~v~~~  289 (414)
T PRK08308        278 ------ENAPEEIVVKMG  289 (414)
T ss_pred             ------CCCCceEEEEcC
Confidence                  366799999864

>PTZ00297 pantothenate kinase; Provisional

Probab=100.00  E-value=3.3e-37  Score=322.17  Aligned_cols=333  Identities=15%  Similarity=0.112  Sum_probs=249.9

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeC---CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINS---VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF  113 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~---~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~  113 (409)
                      ..|+.++|.+.++++    |+++|+...   .+-+++||+|+.++++++|++|++ +|+++||+|+|+++|+++|+++.+
T Consensus       426 ~~Tl~dll~~~a~~~----pd~~al~~~~~~g~~~~lTY~El~~~V~~lAa~L~~-lGV~~GDrVaIls~N~~Ewvia~l  500 (1452)
T PTZ00297        426 VRSLGEMWERSVTRH----STFRCLGQTSESGESEWLTYGTVDARARELGSGLLA-LGVRPGDVIGVDCEASRNIVILEV  500 (1452)
T ss_pred             CCCHHHHHHHHHHHC----CCCeEEEEeccCCCceEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHH
Confidence            368999999999998    999999632   112679999999999999999999 999999999999999999999999


Q ss_pred             HHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc---CCe-EEEeCCC-----------------cch
Q 015325          114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL---KHR-TILIDSP-----------------EFD  172 (409)
Q Consensus       114 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~---~~~-~~~~~~~-----------------~~~  172 (409)
                      ||+++|++.+|+.+  +.+++.+++++++++++|++.+....+.+.   .++ +++++..                 .|+
T Consensus       501 A~~~~GaV~VPly~--t~~eL~yIL~~S~akvVfv~~~~l~kl~~i~~~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~  578 (1452)
T PTZ00297        501 ACALYGFTTLPLVG--KGSTMRTLIDEHKIKVVFADRNSVAAILTCRSRKLETVVYTHSFYDEDDHAVARDLNITLIPYE  578 (1452)
T ss_pred             HHHHcCCEEEeCCC--CHHHHHHHHHhcCCcEEEEchhHHHHHHhhcccCCcEEEEECCCcccccccccccCCcceeeHH
Confidence            99999999999975  467999999999999999998776655432   222 3444310                 134


Q ss_pred             hhhcccCCcccccccccCCCCEEEEEc---CCCCCCCcchhhhccHHHHHHHHHhhcc--CCCCCCCCEEEEeCchhhHH
Q 015325          173 SMTMSWNSKHELDRAKVCQSDVAAIMY---SSGTTGRVKGVMLTHRNLTAAVASSFAS--SPKRVSPAVMLFTMPYFHIY  247 (409)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~a~i~~---TSGTTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~~d~~l~~~p~~~~~  247 (409)
                      ++...+............++|++.|+|   ||||||.||||++||++++..+......  .+...++|++++.+|++|++
T Consensus       579 ~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSGTTG~PKGVmLTH~Nlla~~~~~~~~~~~~~~~~~D~~Ls~LPLaHI~  658 (1452)
T PTZ00297        579 FVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSASGDGLAVVRVTHADVLRDISTLVMTGVLPSSFKKHLMVHFTPFAMLF  658 (1452)
T ss_pred             HHHhcCcccCccccCCCCcccEEEEEecCCCCCCCcCCcEEEEeHHHHHHHHHHHhhhccccCCCCCCEEEEechHHHHH
Confidence            444433211111122346788999985   9999999999999999999988876542  22346789999999999999


Q ss_pred             hHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCC-------------------------
Q 015325          248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD-------------------------  302 (409)
Q Consensus       248 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~-------------------------  302 (409)
                      +....+.++..|+++.+   ++++.+++.|++++||+++++|.+++++......+                         
T Consensus       659 er~~~~~~l~~G~~I~~---~d~~~lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~  735 (1452)
T PTZ00297        659 NRVFVLGLFAHGSAVAT---VDAAHLQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINI  735 (1452)
T ss_pred             HHHHHHHHHHcCCEEEe---CCHHHHHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence            98777888999999874   47899999999999999999999998665432100                         


Q ss_pred             -CCCC----------------CCcceeeecCC--CCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCc
Q 015325          303 -GYDL----------------SSLETVACGAA--PLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGS  363 (409)
Q Consensus       303 -~~~l----------------~~Lr~v~~~G~--~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s  363 (409)
                       ....                .++|.+++||+  +++     .+...  ++++...||+||+.   +.  +......  .
T Consensus       736 g~~~~~l~d~LVf~kir~~lGGrlr~~isGga~~~l~-----~~l~~--~i~i~~g~glTE~~---~~--~~~~~~~--~  801 (1452)
T PTZ00297        736 HRRDSSLLRFIFFRATQELLGGCVEKIVLCVSEESTS-----FSLLE--HISVCYVPCLREVF---FL--PSEGVFC--V  801 (1452)
T ss_pred             CCCCcHHHHHHHHHHHHHHhcCCeEEEEECCCccccC-----hHHhC--CceEEEecceEEee---ee--cCCCCcc--c
Confidence             0000                46888888873  444     33333  57788899999953   22  1122222  2


Q ss_pred             cccccCCceEEEecC-CCCCCCCCCCcceEEEec
Q 015325          364 TGRLSAGLEAKIVDP-ETGDSLPPGKEGELSIRG  396 (409)
Q Consensus       364 ~G~p~~~~~v~i~d~-~~g~~~~~g~~Gei~v~g  396 (409)
                      .|.|+|++++||.|. +.+..   +..|||++++
T Consensus       802 ~G~PlpgvEvKI~~~~E~~~~---~~~GEIlvr~  832 (1452)
T PTZ00297        802 DGTPAPSLQVDLEPFDEPSDG---AGIGQLVLAK  832 (1452)
T ss_pred             CCeecCceEEEEcccccccCC---CCCCeEEEEE
Confidence            499999999999972 33332   3469999964

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.7e-36  Score=302.70  Aligned_cols=354  Identities=21%  Similarity=0.227  Sum_probs=292.7

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.+.+...+...    |+++|+++.  +..+||+|+..+++++|+.|.+ .|++++++|+++++.+.++++.++|+++
T Consensus       227 ~~i~~~f~~~a~~~----p~~~a~~~~--~~~lty~el~~~a~~la~~l~~-~g~~~~~~V~i~~~rs~~~i~~~l~ilk  299 (642)
T COG1020         227 LTIHLLFEEQAATT----PDAVALVRG--GQQLTYAELDARANRLARLLIS-LGVGPGETVAILADRSLELVVALLAVLK  299 (642)
T ss_pred             chHHHHHHHHHHhC----CCceeEecC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEcCCCHHHHHHHHHHHh
Confidence            67999999999999    999999987  7899999999999999999999 9999999999999889999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI  197 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  197 (409)
                      +|+.++|+++..+.+++.++++..++..+++.............  +..+.....   ....   ........+++.+|+
T Consensus       300 aG~~yvP~d~~~P~~r~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~---~~~~~~~~~~~~ayi  371 (642)
T COG1020         300 AGAAYVPLDPLYPAERLAYILEDSRPTLLLTQAHLRVDDVGLPG--LALDDALSE---IPDT---DPIPQALLGDALAYI  371 (642)
T ss_pred             cCCeEecCCCCChHHHHHHHHhhcCccEEEeccccccccccCCc--ccccccccc---CCcc---CcccccCCCCCeEEE
Confidence            99999999999999999999999999999998433322111111  111111111   0000   111123455889999


Q ss_pred             EcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHHHH
Q 015325          198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML  274 (409)
Q Consensus       198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~  274 (409)
                      +|||||||.||||.++|+++.+...+....+ .....|+++...++.+..+.+.++.++..|+++++.+.   .++..+.
T Consensus       372 iytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-~~~~~d~~l~~~s~~fD~~~~~~f~~l~~G~~l~~~~~~~~~~~~~l~  450 (642)
T COG1020         372 IYTSGSTGQPKGVRIEHRALANLLNDAGARF-GLDADDRVLALASLSFDASVFEIFGALLEGARLVLAPALLQVDPAALL  450 (642)
T ss_pred             EEccCCCCCCCCceecCHHHHHHHHHHHHhc-CCCcccEEeecCCcccchhHHHHHHHHhCCCEEEecCccccCCHHHHH
Confidence            9999999999999999999999777777777 78899999999999888888999999999999999964   6899999


Q ss_pred             HHHHHhcceeEeechHHHHHHHhCCCC--CCCCCCCcceeeecCCCCCHHHHHHHHHhCC-CCceecccCcccccceecc
Q 015325          275 KAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFP-KVVLVQAYGLTESTAGVFR  351 (409)
Q Consensus       275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~  351 (409)
                      ..+.++++|++..+|+.+..++.....  .......+|.+++||+.++..+..++....+ ...+.+.||+||+......
T Consensus       451 ~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~  530 (642)
T COG1020         451 ELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPS  530 (642)
T ss_pred             HHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheee
Confidence            999999999999999999999876222  1222335999999999999999999988764 5789999999996654443


Q ss_pred             cCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          352 TVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       352 ~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ...........++|+|+++..+.|.| +.++++|.|..||+++.|.++..||++.+.
T Consensus       531 ~~~~~~~~~~~piG~p~~n~~~~ild-~~~~~~p~gv~gel~i~g~~~a~gy~~~p~  586 (642)
T COG1020         531 FPISAELESRVPIGRPVANTQLYILD-QGLRPLPLGVPGELYIAGLGLALGYLNRPD  586 (642)
T ss_pred             EEcccccCCCCCcceeeCCCeEEEEC-CCCCcCCCCCCeeeEECCcchhhhhcCChh
Confidence            22222222246899999999999999 999999999999999999999999999874

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.95  E-value=6.3e-27  Score=203.18  Aligned_cols=205  Identities=13%  Similarity=0.055  Sum_probs=157.1

Q ss_pred             HhhccCCCCCCCCCCcEEEeC-C---CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhC
Q 015325           44 VSSLRATLPWRDDDTVALINS-V---TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG  119 (409)
Q Consensus        44 l~~~~~~~~~~~p~~~a~~~~-~---~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G  119 (409)
                      |...++++    |+++|++.. +   ++.++||+|+.++++++|+.|++..|+++||+|+|+++|+++++++++|++++|
T Consensus         2 ~~~~~~~~----p~~~al~~~~~~~~~~~~~Ty~~l~~~~~~~a~~L~~~~Gv~~GdrV~i~~~n~~~~~~~~~a~~~~G   77 (227)
T TIGR03089         2 LSPLLAAD----PASPRLTFYDDATGERVELSAATLANWVAKTANLLQDELDAEPGSRVALDLPAHWQTAVWLLAAWSTG   77 (227)
T ss_pred             hhhhhhhC----CCCcEEEEEcCCCCeeEEEEHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence            34556666    999999742 2   234799999999999999999961499999999999999999999999999999


Q ss_pred             CeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeC-----C----------CcchhhhcccCCcccc
Q 015325          120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILID-----S----------PEFDSMTMSWNSKHEL  184 (409)
Q Consensus       120 ~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~  184 (409)
                      ++++|++             .+++++++++++......... .++.+.     .          .++.........  ..
T Consensus        78 ~v~vp~n-------------~s~a~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  141 (227)
T TIGR03089        78 VEVVLAG-------------DPDADVVVTGPDRLAAAAGSG-EVVALSLDPLGRRVAGELPPGVIDFAPEVRVHGD--QF  141 (227)
T ss_pred             CEEEeCC-------------CCCCCEEEeCcchhhhcccCC-ceEEEeccccccCCCCCCCCcccchhhhhhccCC--CC
Confidence            9999995             578999999887766643221 222221     0          012221211111  11


Q ss_pred             ccc-ccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeE
Q 015325          185 DRA-KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETA  262 (409)
Q Consensus       185 ~~~-~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~  262 (409)
                      ... ...++|++.++||||+         +|++++...    ... +++++|+++ .+|++|.+|+ ..++.++..|+++
T Consensus       142 ~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-~l~~~D~~l-~~Pl~H~~gl~~~~~~~l~~G~t~  206 (227)
T TIGR03089       142 APYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-GLPPGDRVL-VLAWTDLEDFLATLLAPLAAGGSL  206 (227)
T ss_pred             CCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-CCCCCCeEE-ecCCCchHHHHHHHHHHhccCceE
Confidence            111 3456899999999985         666665544    334 578999999 9999999999 7899999999999


Q ss_pred             EEecCCCHHHHHHHHHHhcce
Q 015325          263 VVMQRFDLKMMLKAVEEFRVT  283 (409)
Q Consensus       263 v~~~~~~~~~~~~~i~~~~~t  283 (409)
                      ++.++|++..+++.|+++|||
T Consensus       207 v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       207 VLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             EEecCCCHHHHHHHHHhhcCC
Confidence            999999999999999999997

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.95  E-value=3.9e-26  Score=214.21  Aligned_cols=191  Identities=28%  Similarity=0.413  Sum_probs=161.3

Q ss_pred             ccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEe--
Q 015325          188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM--  265 (409)
Q Consensus       188 ~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~--  265 (409)
                      ...++++++++|||||||.||+|+++|+++..........+   ...++++...|++|.+++..++.++..|+++++.  
T Consensus        31 ~~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~---~~~~~~~~~~p~~~~~g~~~~~~~l~~g~~~v~~~~  107 (358)
T PRK07824         31 EPIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDRL---GGPGQWLLALPAHHIAGLQVLVRSVIAGSEPVELDV  107 (358)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhcc---CCCCeEEEECChHHHHHHHHHHHHHHcCCeEEecCc
Confidence            34468999999999999999999999999988877665544   3557899999999999998788899999998873  


Q ss_pred             -cCCCHHHHHHHHHHhc--ceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCc
Q 015325          266 -QRFDLKMMLKAVEEFR--VTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL  342 (409)
Q Consensus       266 -~~~~~~~~~~~i~~~~--~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  342 (409)
                       ..+++..+++.+++++  .++...+|..+..++..... ...++++|.+++||+++++++.+++.+.  ++++++.||+
T Consensus       108 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~~~~~~l~~i~~gG~~l~~~~~~~~~~~--~~~v~~~YG~  184 (358)
T PRK07824        108 SAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPAA-TAALAELDAVLVGGGPAPAPVLDAAAAA--GINVVRTYGM  184 (358)
T ss_pred             CCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCccc-cCCcccceEEEECCCCCCHHHHHHHHhc--CCcEEecccC
Confidence             4578999999999998  56677889988887765432 3457899999999999999999998864  8999999999


Q ss_pred             ccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       343 tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ||++..+.            ..|.|++++++++.|            |||+++|+.++.||+|++.
T Consensus       185 TE~~~~~~------------~~G~~~~g~~v~i~~------------Gei~v~g~~~~~gY~~~~~  226 (358)
T PRK07824        185 SETSGGCV------------YDGVPLDGVRVRVED------------GRIALGGPTLAKGYRNPVD  226 (358)
T ss_pred             CccCCCcC------------cCceeCCCCEEEecC------------CEEEEecCccccccCCCcc
Confidence            99865321            258999999999955            9999999999999998764

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.92  E-value=5.9e-24  Score=203.56  Aligned_cols=201  Identities=22%  Similarity=0.252  Sum_probs=154.0

Q ss_pred             CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHh---hccCCCCCCCCEEEEeCchhhHHh-HHHHHHHHHhCCeEEEe
Q 015325          190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFTMPYFHIYG-LFFCFRAAALMETAVVM  265 (409)
Q Consensus       190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~d~~l~~~p~~~~~g-~~~~~~~l~~G~~~v~~  265 (409)
                      ..++++++++||||||.||++.+||+++.......   ...+ +..++|++++..+..+..+ +...+.+...|++++..
T Consensus        73 ~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~-g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  151 (422)
T TIGR02155        73 PREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA-GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPI  151 (422)
T ss_pred             ChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc-CCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEec
Confidence            45678889999999999999999999986553322   2334 5778898887665543323 23456688899999888


Q ss_pred             cCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCC--CCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcc
Q 015325          266 QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT  343 (409)
Q Consensus       266 ~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  343 (409)
                      ...+++.+++.|+++++|++.++|+.+..|++.......  ...+||.++++||++++++.+.+++.| ++++++.||+|
T Consensus       152 ~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~-g~~v~~~YG~t  230 (422)
T TIGR02155       152 SGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARL-GMKATDIYGLS  230 (422)
T ss_pred             CCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHh-CCceEecccch
Confidence            777889999999999999999999999988765332222  235899999999999999999999999 89999999999


Q ss_pred             cccceecccCCCCCCCCCCcccccc--CCceEEEecCCCCCCCCCCCcceEEEecC
Q 015325          344 ESTAGVFRTVGPDECRRWGSTGRLS--AGLEAKIVDPETGDSLPPGKEGELSIRGP  397 (409)
Q Consensus       344 E~~~~~~~~~~~~~~~~~~s~G~p~--~~~~v~i~d~~~g~~~~~g~~Gei~v~g~  397 (409)
                      |+++..+......  .   ..|.++  +++.++|+|+++|+++++|+.|||++++.
T Consensus       231 E~~~~~~~~~~~~--~---~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~  281 (422)
T TIGR02155       231 EVIGPGVAMECVE--T---QDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL  281 (422)
T ss_pred             hhcCCceeecccc--c---CCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC
Confidence            9853211111100  1   123333  46778999988999999999999999984

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.91  E-value=1.3e-22  Score=197.65  Aligned_cols=364  Identities=17%  Similarity=0.220  Sum_probs=261.2

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeC----CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF  113 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~  113 (409)
                      .++.++|..+++.+    ||++|+..-    ....++||++|..++.+++..|+.+.-+++||.|+++.++++|++++++
T Consensus       770 ~~ile~Lq~R~a~t----p~~~a~~~~n~~~~~~~~~Tw~~f~krva~i~~~l~~k~~lk~Gd~V~Lmy~~sie~vaa~~  845 (1363)
T KOG3628|consen  770 LTILEILQWRAAKT----PDHIAFTTLNARGATKKTLTWAQFHKRVARIAEYLQDKGHLKAGDHVVLMYPPSIEFVAAIY  845 (1363)
T ss_pred             HHHHHHHHHHhhcC----CCceEEEEeccCCcccceeEHHHHHHHHHHHHHHHHhcccCCCCCeEEEEcCChHHHHHHHH
Confidence            68999999999999    999999863    2247899999999999999999997789999999999999999999999


Q ss_pred             HHHHhCCeEccCCCCC------CHHHHHHHHhhcCCeEEEEcCchHHHHhhcCC------eEE--EeCCCcchhhhcccC
Q 015325          114 SLLSLGVIISPANPVN------TESEISRQIQLSNPVIAFATSSVVHKLAKLKH------RTI--LIDSPEFDSMTMSWN  179 (409)
Q Consensus       114 A~~~~G~~~v~l~~~~------~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~--~~~~~~~~~~~~~~~  179 (409)
                      ||+.+|.+++|++|.-      .-..+..+++..++..|+++......+.....      ..+  .++.+.+.+-.....
T Consensus       846 ~Cly~GliPIpv~p~~~s~l~~~l~~~~~ii~~~kv~ailv~~~v~~lLrsr~~s~~~~~s~~p~i~~~~~~~~t~~k~~  925 (1363)
T KOG3628|consen  846 ACLYLGLIPIPVPPPHASNLIEDLPTFRMIIKVYKVAAILVDQKVLKLLRSREASAHVDQSAIPLILVLPKLPETIRKRK  925 (1363)
T ss_pred             HHHhcCeeeeccCCccHHhhhhhhHHHHHHHHHhhhheEEecHHHHHHHhhhhHHHHhhhhcchhhhcccccchhhhhhh
Confidence            9999999999999942      45568889999999999999877665542210      000  011111111101100


Q ss_pred             -----CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHH
Q 015325          180 -----SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCF  253 (409)
Q Consensus       180 -----~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~  253 (409)
                           ..........++..+|++-+.--++|.--++.+||.++++.+..+.+.. .+.+..-++...+.+-..|+ .+++
T Consensus       926 ~~~~k~~~~~~~g~~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~-~l~~~rpl~~~~~~~sGlgf~~wcL 1004 (1363)
T KOG3628|consen  926 KNIKKLNTPTPPGLNNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETC-QLYKSRPLLGCSSPYSGLGFNHWCL 1004 (1363)
T ss_pred             hhhhccCCCCCccccCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHH-ccccCCceEEEecCccchhHHHHHH
Confidence                 0001122234567899999988899999999999999999999999888 45555545555555555566 8999


Q ss_pred             HHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCc------ceeeecCCCCCHHH
Q 015325          254 RAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSL------ETVACGAAPLGKDT  323 (409)
Q Consensus       254 ~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~L------r~v~~~G~~~~~~~  323 (409)
                      ..++.|.+.+++++    -+|..++..|++|++..++.+-..+..+.+....+..+++..      ..++..-+.....+
T Consensus      1005 lgVysGh~T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~al 1084 (1363)
T KOG3628|consen 1005 LGVYSGHPTLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIAL 1084 (1363)
T ss_pred             HHHHcCCceeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHHH
Confidence            99999999888864    478999999999999999999999999988765544443322      22333345555677


Q ss_pred             HHHHHHhCCCC-----ceecccCcccccceecccC---------CCC----------------CCCCCCccccccCCceE
Q 015325          324 IMAFASKFPKV-----VLVQAYGLTESTAGVFRTV---------GPD----------------ECRRWGSTGRLSAGLEA  373 (409)
Q Consensus       324 ~~~~~~~~~~~-----~i~~~yG~tE~~~~~~~~~---------~~~----------------~~~~~~s~G~p~~~~~v  373 (409)
                      ++.|.+.|...     .+-..|+.-=-...+....         .+.                ........|+..+++++
T Consensus      1085 i~sf~klfa~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i 1164 (1363)
T KOG3628|consen 1085 IASFKKLFAAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDI 1164 (1363)
T ss_pred             HHHHHHHHHHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCccccccee
Confidence            77777766211     1222222221111111100         000                00011224888899999


Q ss_pred             EEecCCCCCCCCCCCcceEEEecCccccccCCC
Q 015325          374 KIVDPETGDSLPPGKEGELSIRGPTIMKGIFLP  406 (409)
Q Consensus       374 ~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~  406 (409)
                      .|++||+..+|.+|+.||||+.|.+-+.+|++.
T Consensus      1165 ~IvnPEtk~pc~dge~GEIW~~S~hnA~~~~~~ 1197 (1363)
T KOG3628|consen 1165 AIVNPETKGPCRDGELGEIWVNSAHNASCSFTI 1197 (1363)
T ss_pred             EEeCCccccccccCCcceEEecccccccccccc
Confidence            999999999999999999999999999998864

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.89  E-value=1.8e-22  Score=193.59  Aligned_cols=197  Identities=16%  Similarity=0.175  Sum_probs=150.5

Q ss_pred             CCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc---cCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEe
Q 015325          190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVM  265 (409)
Q Consensus       190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~  265 (409)
                      ..++++.+.+||||||.||+|.+||+++.........   .. ++.++|+++...+..+..+. ...+++...|++++..
T Consensus        84 ~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~-G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~  162 (445)
T TIGR03335        84 DWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQ-GFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPE  162 (445)
T ss_pred             CHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHc-CCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcC
Confidence            4567889999999999999999999998765544332   23 67888999999888776555 4446677888887644


Q ss_pred             cCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCC--CCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcc
Q 015325          266 QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT  343 (409)
Q Consensus       266 ~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  343 (409)
                      ..  ....++.|+++++|.+.++|+.+..|.........  ...+||.+++|||++++++.+.+++.| ++++++.||+|
T Consensus       163 ~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~-g~~v~~~YG~T  239 (445)
T TIGR03335       163 GK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELW-GCEVYNTYGST  239 (445)
T ss_pred             Cc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEecCChh
Confidence            33  35678999999999999999988877654322221  236899999999999999999999999 89999999999


Q ss_pred             cccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecC
Q 015325          344 ESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP  397 (409)
Q Consensus       344 E~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~  397 (409)
                      |++....+       ........+-+++.++|+|++++.++++|+.|||++++-
T Consensus       240 E~~~~~~c-------~~~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L  286 (445)
T TIGR03335       240 EGTMCGEC-------QAVAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTL  286 (445)
T ss_pred             hhhheEEe-------cCCCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEec
Confidence            98532111       111112233356789999988889999999999999975

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.88  E-value=4.5e-22  Score=186.44  Aligned_cols=168  Identities=18%  Similarity=0.163  Sum_probs=136.4

Q ss_pred             CCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCC--CCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCC
Q 015325          192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRV--SPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRF  268 (409)
Q Consensus       192 ~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~--~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~  268 (409)
                      +..++++|||||||.||+|.+||+++...+......+ +..  ..+++++.+|++|.+++ +.++.++..|+++++.+.+
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~~~~~  173 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKIL-GERPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQLAAA  173 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHh-CcCCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEecCCC
Confidence            5578999999999999999999999988877766655 343  34689999999999998 6788899999999999888


Q ss_pred             CHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccce
Q 015325          269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG  348 (409)
Q Consensus       269 ~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~  348 (409)
                      ++..+++.++.+  |++.++|+++..+.+..    ..++++|. ++||+++++++++++++. +...+++.||+||+++.
T Consensus       174 ~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i  245 (386)
T TIGR02372       174 PASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGI  245 (386)
T ss_pred             ChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheecccccccc
Confidence            888888888654  89999999999998753    34677886 678999999999999886 23479999999999875


Q ss_pred             ecccCCCCCCCCCCccccccCCceEEE
Q 015325          349 VFRTVGPDECRRWGSTGRLSAGLEAKI  375 (409)
Q Consensus       349 ~~~~~~~~~~~~~~s~G~p~~~~~v~i  375 (409)
                      .+..       .+...|.|+|++++++
T Consensus       246 ~~~~-------~~~~~~~~~p~~~~~~  265 (386)
T TIGR02372       246 GLRE-------APDDPFRLLPDLACFA  265 (386)
T ss_pred             cccc-------CCCCCcccCCCccccC
Confidence            4431       1234678889887765

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.81  E-value=6.2e-19  Score=161.58  Aligned_cols=202  Identities=25%  Similarity=0.293  Sum_probs=157.4

Q ss_pred             cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhh-HHhHHHHHHHHHhCCeEEEe
Q 015325          189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFH-IYGLFFCFRAAALMETAVVM  265 (409)
Q Consensus       189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~-~~g~~~~~~~l~~G~~~v~~  265 (409)
                      ...++...|--||||||+|+-+.+++..+......+.+.+  .+...+|++....-..- ..|+..-+++-..|++++-.
T Consensus        87 ~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~  166 (438)
T COG1541          87 VPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPI  166 (438)
T ss_pred             ccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEcc
Confidence            4456677789999999999999999998876666655554  36777887766554211 22234455666688887777


Q ss_pred             cCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCC--CCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcc
Q 015325          266 QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT  343 (409)
Q Consensus       266 ~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~--~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  343 (409)
                      .+-+.+.-+.+++++++|++.++|+.+..|.+......  ..-.+||.+++|+|++++++.+.+.++| |++.++.||+|
T Consensus       167 ~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~-g~~~~diYGlt  245 (438)
T COG1541         167 SGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF-GCKAFDIYGLT  245 (438)
T ss_pred             CCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHh-CCceeeccccc
Confidence            66688999999999999999999999999988765442  3346899999999999999999999999 99999999999


Q ss_pred             cccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEec
Q 015325          344 ESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG  396 (409)
Q Consensus       344 E~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g  396 (409)
                      |..+....     .|....-....-+++-++|+||++|+.+++|+.|||++..
T Consensus       246 E~~g~g~~-----eC~~~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~  293 (438)
T COG1541         246 EGFGPGAG-----ECTERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITT  293 (438)
T ss_pred             cccCCccc-----ccccccCCCcchhhceeeeecCCcCccCCCCCeeEEEEEe
Confidence            98766311     1211112334457788999999999999999999999985

>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.65  E-value=3.3e-15  Score=150.41  Aligned_cols=302  Identities=16%  Similarity=0.102  Sum_probs=198.4

Q ss_pred             CHHHHHhhccCCCCCCCCCCcEEEeC----CC--CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHH
Q 015325           39 SAVDYVSSLRATLPWRDDDTVALINS----VT--GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY  112 (409)
Q Consensus        39 ~~~~~l~~~~~~~~~~~p~~~a~~~~----~~--~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~  112 (409)
                      ++...+.+.+.+.    |+..+..+-    ..  -..+||.+....++.+++.|.+ .|...|+.|++++..+.++++..
T Consensus        37 ~~~~~~~~~~~~~----~~~~~~~~~p~~~~~~~i~~~t~r~~~~~~n~~~q~l~~-~~~~~~~~v~i~~~~~~d~~v~v  111 (1032)
T KOG1178|consen   37 TLEDSFRRELAEA----PENTGHVIIPTASESGIIDSFTYRLIRLLSNIIAQFLVS-LGSLRGTTVAIYMLPSVDLVVSV  111 (1032)
T ss_pred             chhhHHHHHHhhc----ccCCCceEeecccccccccchhhhhhhcccchhHHHhhh-cccccCceEEEeccCcCCeeeee
Confidence            3444555666666    666655431    11  2679999999999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCeEccCCCCCC----HHHHHHHHhhc-CCeEEEEcCch-HHHHhhc---CCeEEEeCCCcchhhhcccCCccc
Q 015325          113 FSLLSLGVIISPANPVNT----ESEISRQIQLS-NPVIAFATSSV-VHKLAKL---KHRTILIDSPEFDSMTMSWNSKHE  183 (409)
Q Consensus       113 ~A~~~~G~~~v~l~~~~~----~~~l~~~l~~~-~~~~ii~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  183 (409)
                      ++.+++|..+++++|+++    .+++.++.... ....-+..... .......   ...+..+ ...+..+.....   .
T Consensus       112 ~~~~~~g~~~~~idp~~~~~e~~~~~~~ia~~~~s~~~~i~~~l~i~~~~~~~~~~~~sv~~~-~~~f~~~~~~~~---~  187 (1032)
T KOG1178|consen  112 FAVLAAGLTFLPIDPSWPNSELAGYLMRIAHFLTSVELEIVRRLNIIDILLNSLFPKLSVETI-ADSFQMVLHNED---T  187 (1032)
T ss_pred             eehhhcceEEEEecCCCcccccchHHHhhhhhheeccceehhhhhhHHHHhhccccccchhhc-cchhhhhhccCC---C
Confidence            999999999999999999    33332222111 11111111110 0100000   0001111 111111111111   1


Q ss_pred             ccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCc-h-hhHHhHHHHHHHHHhCCe
Q 015325          184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP-Y-FHIYGLFFCFRAAALMET  261 (409)
Q Consensus       184 ~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p-~-~~~~g~~~~~~~l~~G~~  261 (409)
                      ....-..+++.+++.||||+||.||+|.-+|..+...-.+....+ ..+.++.+ ...+ . ++..-...+.+.+..|+.
T Consensus       188 r~~~~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~~~  265 (1032)
T KOG1178|consen  188 REIRVGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-PPTGSDRF-TFKTSVYFDDTIQKFIGALLFNGNN  265 (1032)
T ss_pred             cceeeecccccceEeecccccccccccchhHHHHHhhhhhccccC-CcCccchh-hhhheeecccchHHHHhhHhhcCce
Confidence            222334567789999999999999999999999999999888887 56666664 2222 2 222222345555556665


Q ss_pred             EEEecC---CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCC-------------CCCCCCcceeeecCCCCCHHHHH
Q 015325          262 AVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD-------------GYDLSSLETVACGAAPLGKDTIM  325 (409)
Q Consensus       262 ~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~-------------~~~l~~Lr~v~~~G~~~~~~~~~  325 (409)
                      +..+..   -++..+.+.+++++++....+|++.+.++......             ....+.||....+|++..-++..
T Consensus       266 l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~  345 (1032)
T KOG1178|consen  266 LLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYT  345 (1032)
T ss_pred             eecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhh
Confidence            655533   24799999999999999999999988777654321             11234799999999999999999


Q ss_pred             HHHHhCCCCceecccCcccccceecc
Q 015325          326 AFASKFPKVVLVQAYGLTESTAGVFR  351 (409)
Q Consensus       326 ~~~~~~~~~~i~~~yG~tE~~~~~~~  351 (409)
                      .+...+.-.-...-|+.++..+..+.
T Consensus       346 s~~~~~~~~~~~~~y~s~~~~~~~s~  371 (1032)
T KOG1178|consen  346 STFDLLAEIFFGLPYLSTDPTGLVSY  371 (1032)
T ss_pred             hhhhcccceeeeecccCCCCccceeH
Confidence            77766532223333888888776655

>KOG3628 consensus Predicted AMP-binding protein [General function prediction only]

Probab=99.57  E-value=9e-14  Score=136.81  Aligned_cols=355  Identities=14%  Similarity=0.161  Sum_probs=241.1

Q ss_pred             CHHHHHhhccCCCCCCCCCCcEEEeCCC-C--ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCC--CchHHHHH
Q 015325           39 SAVDYVSSLRATLPWRDDDTVALINSVT-G--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNS--IEIPILYF  113 (409)
Q Consensus        39 ~~~~~l~~~~~~~~~~~p~~~a~~~~~~-~--~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~--~~~~~~~~  113 (409)
                      ++...++.+-..+    +-..|.+.-+. +  ..+||..+..++.++|+.-+.+-|++++|+|.++...+  .++++..+
T Consensus        95 d~~avl~~~~nhs----~~~ta~i~id~kgk~~~~twdkl~~rA~k~a~~~l~ksgl~~~~~vvL~Y~~~e~ie~~isl~  170 (1363)
T KOG3628|consen   95 DIIAVLRYRRNHS----ATSTAHICIDKKGKATSITWDKLLNRAEKVAHVELNKSGLKPGDRVVLYYRKCEAIEFLISLF  170 (1363)
T ss_pred             chHHHHHhhccCC----CCCceEEEEcCCCceeeeeHHHHHHHHHhhccHHhhccCCCCCcEEEEEEEhhhhhHHhhhhc
Confidence            3444454444444    56667665322 2  57999999999999999444448999999999987766  79999999


Q ss_pred             HHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcc--------ccc
Q 015325          114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKH--------ELD  185 (409)
Q Consensus       114 A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  185 (409)
                      +|...|.+.+|+.+..+.+++..+++....+++++............      -..++...+..|..+.        ...
T Consensus       171 gc~l~g~~~vp~~e~~s~~el~~i~~~~~~~~~l~t~a~~r~~~~~~------~~~s~~k~v~~w~t~~~k~~~~~~k~~  244 (1363)
T KOG3628|consen  171 GCFLLGIVAVPLSELSSSEELKDIVNPTPERVALTTEAGERAFINDN------SPVSLAKAVAWWKTNDFKGNYTKDKIK  244 (1363)
T ss_pred             cccccceeeccchhhhhhhhhhcccCCCccceEeehhhhHHHhhhcc------CcccHHHHHHhhhcccccceeehhhcc
Confidence            99999999999999999999999999999999998765444333211      1112222222222110        111


Q ss_pred             ccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC-------------------CCCCCCCEEEEeCchhhH
Q 015325          186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-------------------PKRVSPAVMLFTMPYFHI  246 (409)
Q Consensus       186 ~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~-------------------~~~~~~d~~l~~~p~~~~  246 (409)
                      .+...-. .++|-||++++|.--|++.+|+ ++.+.+......                   ......+.++........
T Consensus       245 ~P~~~~~-~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~  322 (1363)
T KOG3628|consen  245 KPRMQLP-YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQ  322 (1363)
T ss_pred             CCceeee-eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccc
Confidence            1112223 7899999999999999999888 433332222111                   134566777777777777


Q ss_pred             HhH-HHHHHHHHhCCeEEEecC---CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC-----------CCCCCCCCcce
Q 015325          247 YGL-FFCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS-----------TDGYDLSSLET  311 (409)
Q Consensus       247 ~g~-~~~~~~l~~G~~~v~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~-----------~~~~~l~~Lr~  311 (409)
                      .|+ .+++.++.+|.+.+.+++   ..|..+..++-+++++++..--..++.......           .+..++++||.
T Consensus       323 lGlilGV~~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~  402 (1363)
T KOG3628|consen  323 LGLILGVLVALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKG  402 (1363)
T ss_pred             cchhhhhhhhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceee
Confidence            777 789999999999999986   678899999999999998877666654443322           11245889999


Q ss_pred             eeecCCCCCHHHHHHHHHhC--C-------------------CCceecccCcccccceecccCCCCC-------------
Q 015325          312 VACGAAPLGKDTIMAFASKF--P-------------------KVVLVQAYGLTESTAGVFRTVGPDE-------------  357 (409)
Q Consensus       312 v~~~G~~~~~~~~~~~~~~~--~-------------------~~~i~~~yG~tE~~~~~~~~~~~~~-------------  357 (409)
                      +++.-..++.+..+....+|  |                   |.-....-+++|.+......+....             
T Consensus       403 C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~  482 (1363)
T KOG3628|consen  403 CMVTCTAVDTEFQEIVSDRWLKPLGETNVKVVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEA  482 (1363)
T ss_pred             eEEeeeecchHHHHHHHHhhcccccCcCcceeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccc
Confidence            99999999998876655554  1                   1111122233444433322211000             


Q ss_pred             ---------------CCCCCccccccCC-ceEEEecCCCCCCCCCCCcceEEEecCccccccCC
Q 015325          358 ---------------CRRWGSTGRLSAG-LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFL  405 (409)
Q Consensus       358 ---------------~~~~~s~G~p~~~-~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~  405 (409)
                                     ......+|...|| +.+.+++|++.+.|..+++|||||.++++..+||.
T Consensus       483 L~~~~V~v~~e~~is~~s~kd~~~i~~g~~t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~a  546 (1363)
T KOG3628|consen  483 LKLNEVEVDTEDDISSLSVKDVLCIMPGDATLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYA  546 (1363)
T ss_pred             cccceEEEcchhhhhhcCccccceecccceEEEEeCCCcccccccCcceeEEEecCCcccceee
Confidence                           0011224555555 46788898999999999999999999999999994

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.17  E-value=4e-10  Score=106.38  Aligned_cols=145  Identities=14%  Similarity=0.072  Sum_probs=99.2

Q ss_pred             EEEEEcCCCCCCCcchhhhccHHHHHHHHHh-hccCC-CCCCCCEEEEe--CchhhHHhHHHHHHHHHhCCe-EEEec-C
Q 015325          194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSP-KRVSPAVMLFT--MPYFHIYGLFFCFRAAALMET-AVVMQ-R  267 (409)
Q Consensus       194 ~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~-~~~~~-~~~~~d~~l~~--~p~~~~~g~~~~~~~l~~G~~-~v~~~-~  267 (409)
                      -..+..||||||.|-.+..+.+......... ..... +...++++...  .+. +      ++.++..... +...+ .
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~g~~~g~r~a~~~~~~~-~------ly~~~~~~~~~~~~~~l~  173 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPDGLFAKHRIAFFLRADN-N------LYQSVNNRWISLDFFDLL  173 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCccccccCCcEEEEEccCh-h------HHHHHHhccceeeecCCC
Confidence            3456779999999999999888654333222 22221 33343433332  222 1      1122222111 22222 1


Q ss_pred             CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccc
Q 015325          268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA  347 (409)
Q Consensus       268 ~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~  347 (409)
                      .+.+..++.|++++++++.+.|+.+..|++.......+ ..+|.++++||.+++...+.+++.| |+++++.||+|| +.
T Consensus       174 ~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~f-g~~V~~~YG~tE-g~  250 (430)
T TIGR02304       174 APFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVF-KNTVHQIYQATE-GF  250 (430)
T ss_pred             cCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHh-CCCeeEccCCch-hh
Confidence            46789999999999999999999999998864433333 4689999999999999999999999 899999999999 44


Q ss_pred             e
Q 015325          348 G  348 (409)
Q Consensus       348 ~  348 (409)
                      .
T Consensus       251 l  251 (430)
T TIGR02304       251 L  251 (430)
T ss_pred             e
Confidence            3

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.89  E-value=5.9e-08  Score=89.72  Aligned_cols=197  Identities=16%  Similarity=0.179  Sum_probs=118.0

Q ss_pred             CCCCEEEEEcCCCCCCCcchhhhccHHHHHHH---HHhhccCCCCCCCC-EEEEeCchhh---HHhH--HHHHHHHHhCC
Q 015325          190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV---ASSFASSPKRVSPA-VMLFTMPYFH---IYGL--FFCFRAAALME  260 (409)
Q Consensus       190 ~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~---~~~~~~~~~~~~~d-~~l~~~p~~~---~~g~--~~~~~~l~~G~  260 (409)
                      .++++..++.||||||.|--+.+.+..+....   ....+.+.+..... .++...|...   .++.  ...+.....+.
T Consensus        87 ~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~~~~~  166 (365)
T PF04443_consen   87 PEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLGPSRLPMLILDLSPSPENRNSFSARYAGILGELFFGS  166 (365)
T ss_pred             ChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcccccCCeEEEEecCCcccccchHHHHHHHHhhcccCc
Confidence            34667788999999999866666555554433   22333232222222 2333333211   1111  22333334444


Q ss_pred             eEEEec--CCCHHHHHHHHH----HhcceeEeechHHHHHHHhCCCCCC--CCCC-CcceeeecC------CCCC-HHHH
Q 015325          261 TAVVMQ--RFDLKMMLKAVE----EFRVTHAAVTPPIVVAMSKGGSTDG--YDLS-SLETVACGA------APLG-KDTI  324 (409)
Q Consensus       261 ~~v~~~--~~~~~~~~~~i~----~~~~t~l~~~p~~l~~l~~~~~~~~--~~l~-~Lr~v~~~G------~~~~-~~~~  324 (409)
                      . .+..  .+|.+.++..+.    +.++..+++.|.++-.++.......  ..|+ ..+.+..||      +.++ .++.
T Consensus       167 ~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~  245 (365)
T PF04443_consen  167 R-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSREEFY  245 (365)
T ss_pred             e-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCHHHHH
Confidence            4 4443  367777666664    5678889998887666654433222  2333 456666666      5676 5778


Q ss_pred             HHHHHhCCCC----ceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCc
Q 015325          325 MAFASKFPKV----VLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT  398 (409)
Q Consensus       325 ~~~~~~~~~~----~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~  398 (409)
                      +.+++.| |+    .+++.|||||.....+.  .  .     .-.+++|-. +.|.||+|.++++.|+.|-|.+-.+.
T Consensus       246 ~~l~~~~-Gv~~~~~i~~~ygmtEl~s~~~~--~--~-----~~~~~~p~w-V~iRDp~tl~~~~~Ge~Gli~vidl~  312 (365)
T PF04443_consen  246 ARLQEVF-GVIPIENIYDMYGMTELNSQAYE--C--G-----HGHFHVPPW-VIIRDPETLEPLPPGETGLIQVIDLA  312 (365)
T ss_pred             HHHHHHH-CCCCHHHeeeeeeccccchhhee--C--C-----CCcccCCCe-EEEECCCCCcCCCCCCeeEEEEEccc
Confidence            8888888 65    79999999997654332  1  1     111123333 77889999999999999999888753

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=96.24  E-value=0.057  Score=50.86  Aligned_cols=87  Identities=17%  Similarity=0.101  Sum_probs=72.3

Q ss_pred             eeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCC--CchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEE
Q 015325           69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNS--IEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA  146 (409)
Q Consensus        69 ~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~--~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  146 (409)
                      -+|+.|....+..+|+.|.. .|+.+||+|.+...-+  ..-+-..+|+.++|+..+|+.+. ..+.-..++++.++.+|
T Consensus       109 ~~t~~D~~~wa~~~aR~~~~-~g~~~gd~v~~~~~yGl~tgg~~~~~ga~rig~~vip~~~g-~~~~~~~l~~df~~tvI  186 (438)
T COG1541         109 GYTAKDIERWAELLARSLYS-AGVRKGDKVQNAYGYGLFTGGLGLHYGAERIGATVIPISGG-NTERQLELMKDFKPTVI  186 (438)
T ss_pred             ecCHHHHHHHHHHHHHHHHH-ccCCCCCEEEEEeeeccccCCchhHHHHHhhCEEEEccCCc-cHHHHHHHHHhcCCcEE
Confidence            49999999999999999999 9999999998876511  12267888999999999999985 56667788999999999


Q ss_pred             EEcCchHHHHh
Q 015325          147 FATSSVVHKLA  157 (409)
Q Consensus       147 i~~~~~~~~~~  157 (409)
                      .+.......+.
T Consensus       187 ~~tps~~l~la  197 (438)
T COG1541         187 AATPSYLLYLA  197 (438)
T ss_pred             EEChHHHHHHH
Confidence            99887654443

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=95.44  E-value=1.4  Score=43.94  Aligned_cols=41  Identities=12%  Similarity=-0.010  Sum_probs=31.1

Q ss_pred             CCCcceeeecCCCCCHHHHHHHHHhCCCCceec-ccCccccc
Q 015325          306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ-AYGLTEST  346 (409)
Q Consensus       306 l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~-~yG~tE~~  346 (409)
                      .+++|+|.+.-..-...-+..++..+++.+++. .|++||+-
T Consensus       292 WP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~sSE~~  333 (606)
T PLN02247        292 WPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYASSECY  333 (606)
T ss_pred             CCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccccceE
Confidence            467888777655556777788887778887776 69999963

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=94.92  E-value=0.17  Score=50.05  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=44.3

Q ss_pred             CCCcceeeecCCCCCHHHHHHHHHhCCCCcee-cccCcccccceecccCCCCCCCCCCccccccCCc-eEEEecCCC---
Q 015325          306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGL-EAKIVDPET---  380 (409)
Q Consensus       306 l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~-~v~i~d~~~---  380 (409)
                      .++|++|.+.+..-...-..++++.++++.++ ..|++||+-..+-.    . ..  ...+.+.++. -++-++.++   
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~ASEg~i~i~~----~-~~--~~~~~l~~~~~ffEFip~~~~~~  338 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGASEGFIGIPL----D-PE--DPGYVLAPDSGFFEFIPVDEDEQ  338 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEETTEEEEEES------CC--C--EEE-TTSSEEEEEE-STT--
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccccceEEEEec----C-CC--CCceEeecCCeEEEEEeccCCcc
Confidence            47889777666555667788888888776544 57999996322211    1 11  1122233332 233333221   


Q ss_pred             -----C-----CCCCCCCcceEEEecCccc
Q 015325          381 -----G-----DSLPPGKEGELSIRGPTIM  400 (409)
Q Consensus       381 -----g-----~~~~~g~~Gei~v~g~~v~  400 (409)
                           +     ..|..|+.-||+|+..+-.
T Consensus       339 ~~~~~~~~l~~~ele~G~~YelviTt~~GL  368 (528)
T PF03321_consen  339 NPSEQPKTLLLHELEVGEEYELVITTNSGL  368 (528)
T ss_dssp             -----SSSEEGGG--TT-EEEEEEESTTS-
T ss_pred             cccCCCceecHHHhcCCCeEEEEEecccce
Confidence                 2     3457899999999986533

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=94.39  E-value=0.75  Score=45.64  Aligned_cols=41  Identities=15%  Similarity=-0.002  Sum_probs=30.5

Q ss_pred             CCCcceeeecCCCCCHHHHHHHHHhCCCCceec-ccCccccc
Q 015325          306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ-AYGLTEST  346 (409)
Q Consensus       306 l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~-~yG~tE~~  346 (409)
                      .+++|+|.+....-...-+..++..+++.+++. .|++||+-
T Consensus       303 WP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~ASE~~  344 (612)
T PLN02620        303 WPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECY  344 (612)
T ss_pred             CCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccccceE
Confidence            467888777665556777777877778887666 59999963

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=88.71  E-value=3.3  Score=39.70  Aligned_cols=86  Identities=14%  Similarity=0.074  Sum_probs=65.4

Q ss_pred             eeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCC--chHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEE
Q 015325           69 RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIA  146 (409)
Q Consensus        69 ~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~--~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~i  146 (409)
                      .+|..++......++..+.. .|+++||++......+.  ......++....|+..++++... .+.+...+++.++.++
T Consensus        94 ~~t~~~~~~~~~~~~~~~~~-~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l  171 (422)
T TIGR02155        94 GYTQNDIDTWSSVVARSIRA-AGGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQ-TEKQVQLIQDFKPDII  171 (422)
T ss_pred             ccCHHHHHHHHHHHHHHHHH-cCCCCCcEEEEccCccccchhHHHHHHHHHcCcEEEecCCCC-HHHHHHHHHHHCCCEE
Confidence            46888887777777888887 89999999887655443  22334677889999999888764 5778889999999999


Q ss_pred             EEcCchHHHH
Q 015325          147 FATSSVVHKL  156 (409)
Q Consensus       147 i~~~~~~~~~  156 (409)
                      +........+
T Consensus       172 ~~~Ps~l~~L  181 (422)
T TIGR02155       172 MVTPSYMLNL  181 (422)
T ss_pred             EEcHHHHHHH
Confidence            9887665443

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=87.78  E-value=5  Score=38.85  Aligned_cols=81  Identities=12%  Similarity=0.183  Sum_probs=61.2

Q ss_pred             ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCc--hHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 015325           68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE--IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI  145 (409)
Q Consensus        68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~--~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~  145 (409)
                      ..+|..++...+..++..+.. .|+.+||++.+..+-+..  .....+++...|+..++...   ......++++.++..
T Consensus       104 v~~T~~dl~~~~~~~~r~~~~-~G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga~vi~~~~---~~~~~~~i~~~~~t~  179 (445)
T TIGR03335       104 FFLTWDDWKRYAEKYARSFVS-QGFTAGDRMVICASYGMNVGANTMTLAAREVGMSIIPEGK---CTFPIRIIESYRPTG  179 (445)
T ss_pred             eeecHHHHHHHHHHHHHHHHH-cCCCCCCeEEEEecCCcchhHHHHHHHHHHcCCEEEcCCc---hhHHHHHHHHhCCCE
Confidence            358999999888888888887 899999999998765543  23445788899998776553   234567788899998


Q ss_pred             EEEcCch
Q 015325          146 AFATSSV  152 (409)
Q Consensus       146 ii~~~~~  152 (409)
                      ++.....
T Consensus       180 l~~~ps~  186 (445)
T TIGR03335       180 IVASVFK  186 (445)
T ss_pred             EEECHHH
Confidence            8775543

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	409
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-47
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		4e-40
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		4e-38
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		4e-38
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		5e-38
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-38
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		9e-38
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		9e-38
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-37
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		2e-35
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-21
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		8e-19
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		9e-19
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-18
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		2e-18
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		2e-18
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-14
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		6e-14
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		6e-13
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		9e-13
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		3e-10
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		2e-09
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		5e-09
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		3e-08
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		9e-08
3t5a_A	480	Crystal Structure Of N-Terminal Domain Of Faal28 G3		1e-07
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-07
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-07
3e53_A	480	Crystal Structure Of N-Terminal Domain Of A Fatty A		2e-07
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		2e-07
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		6e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		1e-06
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		1e-06
3l8c_A	521	Structure Of Probable D-Alanine--Poly(Phosphoribito		1e-06
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		8e-06
3e7w_A	511	Crystal Structure Of Dlta: Implications For The Rea		9e-06
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		5e-05
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		9e-05
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		1e-04
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		1e-04
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		1e-04
3qov_A	436	Crystal Structure Of A Hypothetical Acyl-Coa Ligase		2e-04
2y4n_A	437	Paak1 In Complex With Phenylacetyl Adenylate Length		4e-04
3ite_A	562	The Third Adenylation Domain Of The Fungal Sidn Non		5e-04
2y27_A	437	Crystal Structure Of Paak1 In Complex With Atp From		8e-04

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  186 bits (473), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/430 (32%), Positives = 216/430 (50%), Gaps = 44/430 (10%)
Query: 2   EKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYV---SSLRATLPWRDDDT 58
           E+   Q+ + +S  N++   F S  P I +P     +S  DY+    S  AT P      
Sbjct: 28  EQAVSQVMEKQSNNNNSDVIFRSKLPDIYIPNH---LSLHDYIFQNISEFATKP------ 78
Query: 59  VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118
             LIN  TG   ++S+    +  +A+    +  +++ND   +L  N  E  + + +    
Sbjct: 79  -CLINGPTGHVYTYSDVHVISRQIAANFHKLG-VNQNDVVMLLLPNCPEFVLSFLAASFR 136
Query: 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHR----TILIDSPE---- 170
           G   + ANP  T +EI++Q + SN  +    +  V K+  L++      + ID  E    
Sbjct: 137 GATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPI 196
Query: 171 ------FDSMTMSWNSKHE-LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS 223
                 F  +T S     E +D  ++   DV A+ YSSGTTG  KGVMLTH+ L  +VA 
Sbjct: 197 PEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 256
Query: 224 SFASSPKRV---SPAVMLFTMPYFHIYGL---FFC-FRAAALMETAVVMQRFDLKMMLKA 276
                   +   S  V+L  +P FHIY L     C  R  A +   ++M +F++ ++L+ 
Sbjct: 257 QVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAI---LIMPKFEINLLLEL 313
Query: 277 VEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVL 336
           ++  +VT A + PPIV+A++K   T+ YDLSS+  V  GAAPLGK+   A  +KFP   L
Sbjct: 314 IQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKL 373
Query: 337 VQAYGLTESTAGVFRTVG----PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
            Q YG+TE+   +  ++G    P   +  G+ G +    E KIVDP+TGDSL   + GE+
Sbjct: 374 GQGYGMTEAGPVLAMSLGFAKEPFPVKS-GACGTVVRNAEMKIVDPDTGDSLSRNQPGEI 432
Query: 393 SIRGPTIMKG 402
            IRG  IMKG
Sbjct: 433 CIRGHQIMKG 442

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  162 bits (409), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 112/363 (30%), Positives = 182/363 (50%), Gaps = 27/363 (7%)
Query: 60  ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
            LIN   G   ++++       +AS L  +  + + D   +   +S E  + +      G
Sbjct: 40  CLINGANGDVYTYADVELTARRVASGLNKIG-IQQGDVIMLFLPSSPEFVLAFLGASHRG 98
Query: 120 VIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH----RTILIDSP-----E 170
            II+ ANP +T +E+++  + S   +    +    K+         + + +DS       
Sbjct: 99  AIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLH 158
Query: 171 FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPK 230
           F  +T +   ++E  +  +   DV A+ YSSGTTG  KGVMLTH+ L  +VA        
Sbjct: 159 FSELTQA--DENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNP 216
Query: 231 RV---SPAVMLFTMPYFHIYGL---FFC-FRAAALMETAVVMQRFDLKMMLKAVEEFRVT 283
            +   S  V+L  +P FHIY L     C  R  A +   ++M +F++  +L  +E+++V+
Sbjct: 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPI---LIMPKFEIGSLLGLIEKYKVS 273
Query: 284 HAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT 343
            A V PP++++++K    D +DLSSL  +  G APLGK+      +KFP+  L Q YG+T
Sbjct: 274 IAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMT 333
Query: 344 ESTAGVFRTVG----PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399
           E+   +   +     P + +  G+ G +    E KIVDPETG SLP  + GE+ IRG  I
Sbjct: 334 EAGPVLAMCLAFAKEPFDIKP-GACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQI 392
Query: 400 MKG 402
           MKG
Sbjct: 393 MKG 395

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  155 bits (392), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 183/371 (49%), Gaps = 35/371 (9%)
Query: 58  TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117
           T+A  ++   + ++++E+   +  LA  ++    L+ N    V S NS++  +     L 
Sbjct: 44  TIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYG-LNTNHRIVVCSENSLQFFMPVLGALF 102
Query: 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPE- 170
           +GV ++PAN +  E E+   + +S P + F +   + K+  ++       + I++DS   
Sbjct: 103 IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD 162
Query: 171 ---FDSMTMSWNSK------------HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215
              F SM     S                DR K     +A IM SSG+TG  KGV L HR
Sbjct: 163 YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKT----IALIMNSSGSTGLPKGVALPHR 218
Query: 216 NLTAAVASSFASSP----KRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK 271
             TA V  S A  P    + +    +L  +P+ H +G+F            V+M RF+ +
Sbjct: 219 --TACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEE 276
Query: 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF 331
           + L++++++++  A + P +    +K    D YDLS+L  +A G APL K+   A A +F
Sbjct: 277 LFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 336
Query: 332 PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391
               + Q YGLTE+T+ +  T  P+   + G+ G++    EAK+VD +TG +L   + GE
Sbjct: 337 HLPGIRQGYGLTETTSAILIT--PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGE 394
Query: 392 LSIRGPTIMKG 402
           L +RGP IM G
Sbjct: 395 LCVRGPMIMSG 405

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  155 bits (392), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 183/371 (49%), Gaps = 35/371 (9%)
Query: 58  TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117
           T+A  ++   + ++++E+   +  LA  ++    L+ N    V S NS++  +     L 
Sbjct: 39  TIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYG-LNTNHRIVVCSENSLQFFMPVLGALF 97
Query: 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPE- 170
           +GV ++PAN +  E E+   + +S P + F +   + K+  ++       + I++DS   
Sbjct: 98  IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD 157
Query: 171 ---FDSMTMSWNSK------------HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215
              F SM     S                DR K     +A IM SSG+TG  KGV L HR
Sbjct: 158 YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKT----IALIMNSSGSTGLPKGVALPHR 213
Query: 216 NLTAAVASSFASSP----KRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK 271
             TA V  S A  P    + +    +L  +P+ H +G+F            V+M RF+ +
Sbjct: 214 --TACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEE 271
Query: 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF 331
           + L++++++++  A + P +    +K    D YDLS+L  +A G APL K+   A A +F
Sbjct: 272 LFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331
Query: 332 PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391
               + Q YGLTE+T+ +  T  P+   + G+ G++    EAK+VD +TG +L   + GE
Sbjct: 332 HLPGIRQGYGLTETTSAILIT--PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGE 389
Query: 392 LSIRGPTIMKG 402
           L +RGP IM G
Sbjct: 390 LCVRGPMIMSG 400

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  155 bits (391), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 183/371 (49%), Gaps = 35/371 (9%)
Query: 58  TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117
           T+A  ++   + ++++E+   +  LA  ++    L+ N    V S NS++  +     L 
Sbjct: 39  TIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYG-LNTNHRIVVCSENSLQFFMPVLGALF 97
Query: 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPE- 170
           +GV ++PAN +  E E+   + +S P + F +   + K+  ++       + I++DS   
Sbjct: 98  IGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD 157
Query: 171 ---FDSMTMSWNSK------------HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215
              F SM     S                DR K     +A IM SSG+TG  KGV L HR
Sbjct: 158 YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKT----IALIMNSSGSTGLPKGVALPHR 213
Query: 216 NLTAAVASSFASSP----KRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK 271
             TA V  S A  P    + +    +L  +P+ H +G+F            V+M RF+ +
Sbjct: 214 --TACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEE 271
Query: 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF 331
           + L++++++++  A + P +    +K    D YDLS+L  +A G APL K+   A A +F
Sbjct: 272 LFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331
Query: 332 PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391
               + Q YGLTE+T+ +  T  P+   + G+ G++    EAK+VD +TG +L   + GE
Sbjct: 332 HLPGIRQGYGLTETTSAILIT--PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGE 389
Query: 392 LSIRGPTIMKG 402
           L +RGP IM G
Sbjct: 390 LCVRGPMIMSG 400

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  154 bits (390), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 184/370 (49%), Gaps = 35/370 (9%)
Query: 59  VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118
           +A  N+VTG+  S++E+  ++  L   LQN   +     A   S N  E  I   + L +
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALC-SENCEEFFIPVIAGLFI 100
Query: 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFD- 172
           GV ++P N + T  E+   + +S P I F++   + K+  ++      +TI+I   + D 
Sbjct: 101 GVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY 160
Query: 173 ----------------SMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
                               S     E+DR    +  VA IM SSG+TG  KGV LTH N
Sbjct: 161 RGYQCLDTFIKRNTPPGYQASSFKTVEVDR----KEQVALIMNSSGSTGLPKGVQLTHEN 216
Query: 217 LTAAVASSFASSP---KRVSPAVMLFTM-PYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
           +      S A  P    +VSP   + T+ P+ H +G+F            V++ +FD + 
Sbjct: 217 IVTRF--SHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEET 274
Query: 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332
            LK +++++ T+  + P +   ++K    + YDLS+L  +A G APL K+   A A +F 
Sbjct: 275 FLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFN 334
Query: 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
              + Q YGLTE+T+ +  T  P+   + G++G++    +AK++D +T  SL P + GE+
Sbjct: 335 LPGVRQGYGLTETTSAIIIT--PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 393 SIRGPTIMKG 402
            ++GP +MKG
Sbjct: 393 CVKGPMLMKG 402

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  154 bits (389), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 185/371 (49%), Gaps = 35/371 (9%)
Query: 58  TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117
           T+A  ++   + ++++E+   +  LA  ++    L+ N    V S NS++  +     L 
Sbjct: 44  TIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYG-LNTNHRIVVSSENSLQFFMPVLGALF 102
Query: 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPE- 170
           +GV ++PAN    E E+   + +S P + F +   + K+  ++       + I++DS   
Sbjct: 103 IGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTD 162
Query: 171 ---FDSMTMSWNSK------------HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHR 215
              F SM     S                DR K     +A IM SSG+TG  KGV L HR
Sbjct: 163 YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKT----IALIMNSSGSTGLPKGVALPHR 218
Query: 216 NLTAAVASSFASSP---KRVSP-AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLK 271
            L  AV  S A  P    +++P   +L  +P+ H +G+F            V+M RF+ +
Sbjct: 219 AL--AVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEE 276
Query: 272 MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF 331
           + L++++++++  A + P +   ++K    D YDLS+L  +A G APL K+   A A +F
Sbjct: 277 LFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 336
Query: 332 PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE 391
               + Q YGLTE+T+ +  T  P    + G+ G++    EAK+VD +TG +L   + GE
Sbjct: 337 HLPGIRQGYGLTETTSAILIT--PKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGE 394
Query: 392 LSIRGPTIMKG 402
           LS+RGP IM G
Sbjct: 395 LSVRGPMIMSG 405

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  154 bits (389), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 183/370 (49%), Gaps = 35/370 (9%)
Query: 59  VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118
           +A  N+VTG+  S++E+  ++  L   LQN   +     A   S N  E  I   + L +
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALC-SENCEEFFIPVIAGLFI 100
Query: 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFD- 172
           GV ++P N + T  E+   + +S P I F++   + K+  ++      +TI+I   + D 
Sbjct: 101 GVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY 160
Query: 173 ----------------SMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
                               S     E+DR    +  VA IM SSG+TG  KGV LTH N
Sbjct: 161 RGYQCLDTFIKRNTPPGFQASSFKTVEVDR----KEQVALIMNSSGSTGLPKGVQLTHEN 216
Query: 217 LTAAVASSFASSP---KRVSPAVMLFTM-PYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
           +      S A  P    +VSP   + T+ P+ H +G+F            V++ +FD + 
Sbjct: 217 IVTRF--SHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEET 274
Query: 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332
            LK +++++ T   + P +   ++K    + YDLS+L  +A G APL K+   A A +F 
Sbjct: 275 FLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFN 334
Query: 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
              + Q YGLTE+T+ +  T  P+   + G++G++    +AK++D +T  SL P + GE+
Sbjct: 335 LPGVRQGYGLTETTSAIIIT--PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 393 SIRGPTIMKG 402
            ++GP +MKG
Sbjct: 393 CVKGPMLMKG 402

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  154 bits (388), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/370 (29%), Positives = 183/370 (49%), Gaps = 35/370 (9%)
Query: 59  VALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL 118
           +A  N+VTG+  S++E+  ++  L   LQN   +     A   S N  E  I   + L +
Sbjct: 42  IAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALC-SENCEEFFIPVIAGLFI 100
Query: 119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTILIDSPEFD- 172
           GV ++P N + T  E+   + +S P I F++   + K+  ++      +TI+I   + D 
Sbjct: 101 GVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDY 160
Query: 173 ----------------SMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN 216
                               S     E+DR    +  VA IM SSG+TG  KGV LTH N
Sbjct: 161 RGYQCLDTFIKRNTPPGFQASSFKTVEVDR----KEQVALIMNSSGSTGLPKGVQLTHEN 216
Query: 217 LTAAVASSFASSP---KRVSPAVMLFTM-PYFHIYGLFFCFRAAALMETAVVMQRFDLKM 272
           +      S A  P    +VSP   + T+ P+ H +G+F            V++ +FD + 
Sbjct: 217 IVTRF--SHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEET 274
Query: 273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP 332
            LK +++++ T   + P +   ++K    + YDLS+L  +A G APL K+   A A +F 
Sbjct: 275 FLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFN 334
Query: 333 KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
              + Q YGLTE+T+ +  T  P+   + G++G++    +AK++D +T  SL P + GE+
Sbjct: 335 LPGVRQGYGLTETTSAIIIT--PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV 392
Query: 393 SIRGPTIMKG 402
            ++GP +MKG
Sbjct: 393 CVKGPMLMKG 402

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  146 bits (368), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 185/373 (49%), Gaps = 38/373 (10%)
Query: 58  TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS 117
           T+A  ++   + +++SE+      LA  ++      ++  A V S NS++  +     L 
Sbjct: 73  TIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIA-VCSENSLQFFMPVCGALF 131
Query: 118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK------HRTILIDSPEF 171
           +GV ++P N +  E E+   + +S P I F +   + K+  ++       + +++DS E 
Sbjct: 132 IGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSRE- 190
Query: 172 DSM----TMSWNSKH-------------ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH 214
           D M      S+   H               DR    ++  A IM SSG+TG  KGV LTH
Sbjct: 191 DYMGKQSMYSFIESHLPAGFNEYDYIPDSFDR----ETATALIMNSSGSTGLPKGVELTH 246
Query: 215 RNLTAAVASSFASSP---KRVSPAVMLFT-MPYFHIYGLFFCFRAAALMETAVVMQRFDL 270
           +N+   V  S    P    ++ P   + T +P+ H +G+F            V+M RF+ 
Sbjct: 247 KNI--CVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEE 304
Query: 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330
           ++ L++++++++  A + P +    +K    D YDLS+L  +A G APL K+   A A +
Sbjct: 305 ELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLSNLHEIASGGAPLAKEVGEAVAKR 364
Query: 331 FPKVVLVQAYGLTESTAGVFRT-VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKE 389
           F    + Q YGLTE+T+ +  T  G D+  + G+ G++     AKIVD +TG +L   + 
Sbjct: 365 FKLPGIRQGYGLTETTSAIIITPRGRDD--KPGACGKVVPFFSAKIVDLDTGKTLGVNQR 422
Query: 390 GELSIRGPTIMKG 402
           GEL ++GP IMKG
Sbjct: 423 GELCVKGPMIMKG 435

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 155/361 (42%), Gaps = 23/361 (6%)
Query: 55  DDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYF 113
           DD     I +  G ++S++E   R   +A+ L  V R L   D     +  S+E  +LY 
Sbjct: 14  DDPHKLAIETAAGDKISYAELVARAGRVANVL--VARGLQVGDRVAAQTEKSVEALVLYL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHR---TILIDSPE 170
           + +  G +  P N   T  E+   I  + P I     S    +A +  +   T+    P+
Sbjct: 72  ATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPD 131
Query: 171 -----FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
                 D+   +  +   +DR      D+AAI+Y+SGTTGR KG  L+H NL A+ + + 
Sbjct: 132 GRGSLTDAAAGASEAFATIDRG---ADDLAAILYTSGTTGRSKGAXLSHDNL-ASNSLTL 187
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME-TAVVMQRFDLKMMLKAVEEFRVTH 284
               +     V++  +P +H +GLF           + + + +FD   +L      R T 
Sbjct: 188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATV 245
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
               P     + +                 G+APL  DT   +++K    VL + YG TE
Sbjct: 246 LXGVPTFYTRLLQSPRLTKETTGHXRLFISGSAPLLADTHREWSAKTGHAVL-ERYGXTE 304
Query: 345 STAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGI 403
           +      T  P D  R  G+ G    G+ A++ DPETG  LP G  G + ++GP + KG 
Sbjct: 305 TNX---NTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGY 361
Query: 404 F 404
           +
Sbjct: 362 W 362

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 23/361 (6%)
Query: 55  DDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYF 113
           DD     I +  G  +S++E   R   +A+ L  V R L   D     +  S+E  +LY 
Sbjct: 14  DDPHXLAIETAAGDXISYAELVARAGRVANVL--VARGLQVGDRVAAQTEXSVEALVLYL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---VHKLAKLKHRTILIDSPE 170
           + +  G +  P N   T  E+   I  + P I     S    +  +A     T+    P+
Sbjct: 72  ATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPD 131
Query: 171 -----FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
                 D+   +  +   +DR      D+AAI+Y+SGTTGR  G ML+H NL A+ + + 
Sbjct: 132 GRGSLTDAAAGASEAFATIDRGA---DDLAAILYTSGTTGRSXGAMLSHDNL-ASNSLTL 187
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV-MQRFDLKMMLKAVEEFRVTH 284
               +     V++  +P +H +GLF           +++ +  FD   +L  +   R T 
Sbjct: 188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATV 245
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
               P     + +           +     G+APL  DT   +++     VL + YG+TE
Sbjct: 246 LMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTE 304
Query: 345 STAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGI 403
           +      T  P D  R  G+ G    G+ A++ DPETG  LP G  G + + GP +  G 
Sbjct: 305 TN---MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGY 361
Query: 404 F 404
           +
Sbjct: 362 W 362

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 23/361 (6%)
Query: 55  DDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYF 113
           DD     I +  G  +S++E   R   +A+ L  V R L   D     +  S+E  +LY 
Sbjct: 14  DDPHXLAIETAAGDXISYAELVARAGRVANVL--VARGLQVGDRVAAQTEXSVEALVLYL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---VHKLAKLKHRTILIDSPE 170
           + +  G +  P N   T  E+   I  + P I     S    +  +A     T+    P+
Sbjct: 72  ATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPD 131
Query: 171 -----FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
                 D+   +  +   +DR      D+AAI+Y+SGTTGR  G ML+H NL A+ + + 
Sbjct: 132 GRGSLTDAAAGASEAFATIDRGA---DDLAAILYTSGTTGRSXGAMLSHDNL-ASNSLTL 187
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV-MQRFDLKMMLKAVEEFRVTH 284
               +     V++  +P +H +GLF           +++ +  FD   +L  +   R T 
Sbjct: 188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATV 245
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
               P     + +           +     G+APL  DT   +++     VL + YG+TE
Sbjct: 246 LMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTE 304
Query: 345 STAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGI 403
           +      T  P D  R  G+ G    G+ A++ DPETG  LP G  G + + GP +  G 
Sbjct: 305 TN---MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGY 361
Query: 404 F 404
           +
Sbjct: 362 W 362

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 153/361 (42%), Gaps = 23/361 (6%)
Query: 55  DDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTR-LSKNDTAFVLSTNSIEIPILYF 113
           DD     I +  G  +S++E   R   +A+ L  V R L   D     +  S+E  +LY 
Sbjct: 14  DDPHXLAIETAAGDXISYAELVARAGRVANVL--VARGLQVGDRVAAQTEXSVEALVLYL 71
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSV---VHKLAKLKHRTILIDSPE 170
           + +  G +  P N   T  E+   I  + P I     S    +  +A     T+    P+
Sbjct: 72  ATVRAGGVYLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPD 131
Query: 171 -----FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF 225
                 D+   +  +   +DR      D+AAI+Y+SGTTGR  G ML+H NL A+ + + 
Sbjct: 132 GRGSLTDAAAGASEAFATIDRGA---DDLAAILYTSGTTGRSXGAMLSHDNL-ASNSLTL 187
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV-MQRFDLKMMLKAVEEFRVTH 284
               +     V++  +P +H +GLF           +++ +  FD   +L  +   R T 
Sbjct: 188 VDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATV 245
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
               P     + +           +     G+APL  DT   +++     VL + YG+TE
Sbjct: 246 LMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTHREWSAXTGHAVL-ERYGMTE 304
Query: 345 STAGVFRTVGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGI 403
           +      T  P D  R  G+ G    G+ A++ DPETG  LP G  G + + GP +  G 
Sbjct: 305 TN---MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGY 361
Query: 404 F 404
           +
Sbjct: 362 W 362

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 153/349 (43%), Gaps = 15/349 (4%)
Query: 60  ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
           A +   T +R+++++     N  A  L  +  ++K D   +L  NS+E   L++    LG
Sbjct: 20  AYVEPSTDVRMTYAQMNALANRCADVLTALG-IAKGDRVALLMPNSVEFCCLFYGAAKLG 78
Query: 120 VIISPANPVNTESEISRQIQLS-NPVIAFATSS--VVHKL-AKLKHRTILIDSPEFDSMT 175
            +  P N      E+S  +  S + V+ +   S  V+  + A+      + D    DS+ 
Sbjct: 79  AVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLA 138
Query: 176 MSWNSKHELDRAKVCQSDVAA-IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
               S    + A  C  D    IMY+SGTTG  KGV+ TH ++ +A ASS+AS+      
Sbjct: 139 ERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSA-ASSWASTIDVRYR 197
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
             +L  +P FH+  L     +A    T + M +FD   +   + E RV      P I+  
Sbjct: 198 DRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNF 257
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
           M +       D         G AP+ +  I  +A+K   + +VQ Y LTES  G    + 
Sbjct: 258 MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLS 315
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDS--LPPGKEGELSIRGPTIMK 401
            D  R+ GS GR +   +  +     GD   +    EGE+ I+   ++K
Sbjct: 316 EDALRKAGSAGRATMFTDVAV----RGDDGVIREHGEGEVVIKSDILLK 360

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 153/349 (43%), Gaps = 15/349 (4%)
Query: 60  ALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLG 119
           A +   T +R+++++     N  A  L  +  ++K D   +L  NS+E   L++    LG
Sbjct: 34  AYVEPSTDVRMTYAQMNALANRCADVLTALG-IAKGDRVALLMPNSVEFCCLFYGAAKLG 92
Query: 120 VIISPANPVNTESEISRQIQLS-NPVIAFATSS--VVHKL-AKLKHRTILIDSPEFDSMT 175
            +  P N      E+S  +  S + V+ +   S  V+  + A+      + D    DS+ 
Sbjct: 93  AVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLA 152
Query: 176 MSWNSKHELDRAKVCQSDVAA-IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
               S    + A  C  D    IMY+SGTTG  KGV+ TH ++ +A ASS+AS+      
Sbjct: 153 ERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSA-ASSWASTIDVRYR 211
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
             +L  +P FH+  L     +A    T + M +FD   +   + E RV      P I+  
Sbjct: 212 DRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNF 271
Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
           M +       D         G AP+ +  I  +A+K   + +VQ Y LTES  G    + 
Sbjct: 272 MRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGGGTLLLS 329
Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDS--LPPGKEGELSIRGPTIMK 401
            D  R+ GS GR +   +  +     GD   +    EGE+ I+   ++K
Sbjct: 330 EDALRKAGSAGRATMFTDVAV----RGDDGVIREHGEGEVVIKSDILLK 374

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 151/353 (42%), Gaps = 27/353 (7%)
Query: 71  SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
           +F E    T  LAS +     + K +   V   NSI+     ++L  +     P NP   
Sbjct: 54  NFLEICEVTKKLASGISR-KGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYK 112
Query: 131 ESEISRQIQLSNPVIAFATSSVVHK---------LAKLKHRTILIDSPEFDSMTMSWNSK 181
             E+   +  S      AT+ VVH          L K     + +   E +S++   +S 
Sbjct: 113 SFELEHILNDSE-----ATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSG 167
Query: 182 HE-LDRAKVC-QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLF 239
            E  +  KV  + DVA I Y+ GTTG  KGV LTH NL AA A   A +        ++ 
Sbjct: 168 SEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNL-AANALQLAVATGLSHXDTIVG 226
Query: 240 TMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPI--VVAMSK 297
             P FH            +    VV   F+ + + + +E+++ T +   PP   V+  + 
Sbjct: 227 CXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTL 286
Query: 298 GGSTDGYDLSSLETVACGAAPLGK---DTIMAFASK---FPKVVLVQAYGLTESTAGVFR 351
             S   YD S L+  A GA P+     + ++  A++    P++   Q +G TE+   V  
Sbjct: 287 ESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXV-T 345
Query: 352 TVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
           T  P    +  + G   + +E K++  E G  L  G+ GE+ IRGP I KG +
Sbjct: 346 TNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYW 398

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 16/216 (7%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC 252
           D+A+IM++SGTTG  K V  T RN  A+ A     S         L  +P +HI GL   
Sbjct: 164 DIASIMFTSGTTGPQKAVPQTFRNHYAS-AIGCKESLGFDRDTNWLSVLPIYHISGLSVL 222
Query: 253 FRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
            RA     T  ++ +F+ + +L  ++  R+TH ++ P  +  + + G  + Y+   L+ +
Sbjct: 223 LRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYN---LQKI 279
Query: 313 ACGAAPLGKDTI-MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECR-RWGSTGRLSAG 370
             G A L    I  A     P   +  ++G+TE T   F T  P+    R  + G  SA 
Sbjct: 280 LLGGAKLSATMIETALQYNLP---IYNSFGMTE-TCSQFLTATPEMLHARPDTVGMPSAN 335
Query: 371 LEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLP 406
           ++ KI +P           GEL I+G  +M G   P
Sbjct: 336 VDVKIKNPN------KEGHGELMIKGANVMNGYLYP 365

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 141/347 (40%), Gaps = 18/347 (5%)
Query: 65  VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISP 124
           V G+R++  ++  R   LAS L     +   D   +LS N  E+  L  ++  +G I+ P
Sbjct: 27  VDGVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP 85
Query: 125 ANPVNTESEISRQIQLSNPVIAFA-------TSSVVHKLAKLKHRTILIDSPEFDSMTMS 177
            N      EI+  +    P +  A        + V+  L  +K    + D     +    
Sbjct: 86  VNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKD 145
Query: 178 WNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVM 237
             S       +   +D   I++++   GR +G +++  NL  A  SS   + +     V 
Sbjct: 146 LASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIA-QSSLVDAWRLTEADVN 204
Query: 238 LFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSK 297
           L  +P FH+ GL            +V+  +FD     + +E  +VT  A   P++  +  
Sbjct: 205 LGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILD 264
Query: 298 GGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDE 357
             +     L+SL  V     P   +TI  F +  P       +G +E++     T  P  
Sbjct: 265 QAAP--AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSG--LSTFAPYR 317
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
            R   S GR        +VD E    LPPG+ GE+ +RGPT+ KG +
Sbjct: 318 DRP-KSAGRPLFWRTVAVVDAED-RPLPPGEVGEIVLRGPTVFKGYW 362

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 166/392 (42%), Gaps = 30/392 (7%)
Query: 35  DAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSK 94
           D  ++  D++   RA   +   + V+ +++    R +++E  +R   L   L+ +  +  
Sbjct: 15  DEELNLWDFLE--RAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALG-VGV 71
Query: 95  NDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR-------QIQLSNPVIAF 147
            D    L  N       YF++  +G ++  ANP  +  EI+        ++ L +P +  
Sbjct: 72  GDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLP 131
Query: 148 ATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRV 207
              ++  +L  ++H  ++ +      +        E D  +V +     + Y++GTTG  
Sbjct: 132 LVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLP 191
Query: 208 KGVMLTHRNLT-AAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM- 265
           KGV+ +HR L   ++A+S           V+L  +P FH+      + AA L+    V+ 
Sbjct: 192 KGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPY-AATLVGAKQVLP 250
Query: 266 -QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI 324
             R D   +++  +   VT  A  P + +A++    + G+ L +L  +  G +   +  I
Sbjct: 251 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLI 310
Query: 325 MAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDP------ 378
             F      V + Q YGLTE++  V +              +L+  L+AK   P      
Sbjct: 311 ARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT--LKAKTGLPIPLVRL 366
Query: 379 ----ETGDSLPP-GKE-GELSIRGPTIMKGIF 404
               E G  +P  GK  GE+ ++GP I  G +
Sbjct: 367 RVADEEGRPVPKDGKALGEVQLKGPWITGGYY 398

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 140/354 (39%), Gaps = 32/354 (9%)
Query: 71  SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
           S+ E   R + LA+  Q +  + + D   V   N  E   + F+L  LG +   A P + 
Sbjct: 52  SYRELDTRADRLAAGFQKLG-IQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110
Query: 131 ESEISRQIQLSNP---VIAFATS---------SVVHKLAKLKHRTILIDSPEFDSMTMSW 178
            SEI+   + +     +I  A S          V  KL  LK+  +  ++ EF  + +  
Sbjct: 111 SSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEF--LPLED 168
Query: 179 NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVML 238
                +   +V  SDVA +  S G+TG  K +  TH +   ++  S        S  V L
Sbjct: 169 LHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHS-TVYL 227
Query: 239 FTMPYFHIY--------GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP 290
             +P  H Y        G+ +      L  +      F L      +E  +VT  A+ PP
Sbjct: 228 AALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL------IEREKVTITALVPP 281
Query: 291 IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
           + +      S+   DLSSL+ +  G A    +      + F    L Q +G+ E      
Sbjct: 282 LAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMAEGLVNYT 340
Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
           R   P+E         +S   E+++ D    D + PG+ G L  RGP  ++G +
Sbjct: 341 RLDDPEEIIVNTQGKPMSPYDESRVWDDHDRD-VKPGETGHLLTRGPYTIRGYY 393

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 137/354 (38%), Gaps = 32/354 (9%)
Query: 71  SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
           S+ E   R + LA+  Q +  + + D   V   N  E   + F+L  LG +   A P + 
Sbjct: 52  SYRELDTRADRLAAGFQKLG-IQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHR 110
Query: 131 ESEISRQIQLSNP---VIAFATS---------SVVHKLAKLKHRTILIDSPEFDSMTMSW 178
            SEI+   + +     +I  A S          V  KL  LK+  +  ++ EF  + +  
Sbjct: 111 SSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEF--LPLED 168
Query: 179 NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVML 238
                +   +V  SDVA +  S G+TG  K +  TH +   ++  S        S  V L
Sbjct: 169 LHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHS-TVYL 227
Query: 239 FTMPYFHIY--------GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP 290
             +P  H Y        G+ +      L  +      F L      +E  +VT  A+ PP
Sbjct: 228 AALPXAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL------IEREKVTITALVPP 281
Query: 291 IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
           +        S+   DLSSL+ +  G A    +      + F    L Q +G  E      
Sbjct: 282 LAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGXAEGLVNYT 340
Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
           R   P+E          S   E+++ D    D + PG+ G L  RGP  ++G +
Sbjct: 341 RLDDPEEIIVNTQGKPXSPYDESRVWDDHDRD-VKPGETGHLLTRGPYTIRGYY 393

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 152/359 (42%), Gaps = 34/359 (9%)
Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
           ++S+ E  R + +LA+ L     L K DTA V   N  E  I++F+LL  GV++  A   
Sbjct: 55  QLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYS 113
Query: 129 NTESEISRQIQLSNPVI--------AFATSSVVHKLAKLK---HRTILIDSPEFDSMTMS 177
           + + E++  I+   P +         F+ +  +  L  +       ++++    D   + 
Sbjct: 114 HRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLD 173
Query: 178 W---NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
           W    ++  +D +     +VA    S G+TG  K +  TH +   +V +S A      S 
Sbjct: 174 WIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRAS-AEICGLNSN 232
Query: 235 AVMLFTMPYFHIY-----GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTP 289
             +L  +P  H +     G      A   +  A   +  +       ++  +V  A++ P
Sbjct: 233 TRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLN---CFSIIQRHQVNMASLVP 289
Query: 290 PIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV---LVQAYGLTEST 346
             V+   +  +     + SL+ +  G A   +    + A + P+V+   L Q +G+ E  
Sbjct: 290 SAVIMWLEKAAQYKDQIQSLKLLQVGGASFPE----SLARQVPEVLNCKLQQVFGMAEGL 345
Query: 347 AGVFRTVGPDECRRWGSTGR-LSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
               R    DE + + + GR +S+  E KIVD E    +P G+ G L+ RGP    G +
Sbjct: 346 VNYTRLDDSDE-QIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYY 402

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 153/356 (42%), Gaps = 29/356 (8%)
Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D  AL     GLR++ +E   R  ++A+ L +   L       V++ NS ++ I   
Sbjct: 14  RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQI---QLSNPVIAFA--TSSVVHKLAKLKHRTILIDS 168
           +L  LG + +  NP    +E++  I   +++  VIA     +  + +      R I +  
Sbjct: 73  ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARIIFLGD 131
Query: 169 PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
              D    S+    E  + +  Q   A I Y+SGTTG  K  ++  R   + V   F S+
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVL--FMST 187
Query: 229 P---KRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTH 284
               +     V+L  MP +H+ G F    AA AL  T VV++ F     L+ V++ +VT 
Sbjct: 188 QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS 247
Query: 285 AAVTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
              TP  + A++   +  G    L SL  V    A +  D ++    +      V AYG 
Sbjct: 248 LFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM-PDAVLETVHQHLPGEKVNAYGT 306
Query: 343 TESTAGVFRTVGPDECRRWGSTGRLSAGL--EAKIVDPETG--DSLPPGKEGELSI 394
           TE+   ++        R+  +   ++ G   E +IV    G  + +  G+EGEL +
Sbjct: 307 TEAMNSLY-------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIV 355

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 150/354 (42%), Gaps = 25/354 (7%)
Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D  AL     GLR++ +E   R  ++A+ L +   L       V++ NS ++ I   
Sbjct: 14  RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQI---QLSNPVIAFA--TSSVVHKLAKLKHRTILIDS 168
           +L  LG + +  NP    +E++  I   +++  VIA     +  + +      R I +  
Sbjct: 73  ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARIIFLGD 131
Query: 169 PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFAS 227
              D    S+    E  + +  Q   A I Y+SGTTG  K  ++  R   + V   S   
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV 189
Query: 228 SPKRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTHAA 286
             +     V+L  MP +H+ G F    AA AL  T VV++ F     L+ V++ +VT   
Sbjct: 190 GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLF 249
Query: 287 VTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
            TP  + A++   +  G    L SL  V    A +  D ++    +      V  YG TE
Sbjct: 250 ATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM-PDAVLETVHQHLPGEKVNGYGTTE 308
Query: 345 STAGVFRTVGPDECRRWGSTGRLSAGL--EAKIVDPETG--DSLPPGKEGELSI 394
           +   ++        R+  +   ++ G   E +IV    G  + +  G+EGEL +
Sbjct: 309 AMNSLY-------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIV 355

>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 171/431 (39%), Gaps = 74/431 (17%)
Query: 24  SLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLA 83
           +LR    L P D   + +DY          +D D VA+        +++S+  RRT ++A
Sbjct: 29  ALRACARLQPHDPAFTFMDYE---------QDWDGVAIT-------LTWSQLYRRTLNVA 72
Query: 84  SYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN---TESEISRQIQ 139
              Q ++R  S  D   + +   +E  + +   L  G I  P +      T+      + 
Sbjct: 73  ---QELSRCGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLS 129
Query: 140 LSNPVIAFATSSVVHKLAKLKHRTILIDSP---EFDSMTMSWNSKHELDRAKVCQSDVAA 196
            S+PV    TSS V  + +   R      P   E D + +   + +     +   +  A 
Sbjct: 130 DSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPST--AY 187
Query: 197 IMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSP--AVMLFTMPYFHIYGLFF 251
           + Y+SG+T    GV+++H+N+      + S + +    + P  + ++  +P++H  GL  
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVI 247
Query: 252 CFRA-------AALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD-- 302
              A       A L      +QR    M L A  +F    AA  P     ++   +TD  
Sbjct: 248 GICAPILGGYPAVLTSPVSFLQRPARWMHLMA-SDFHAFSAA--PNFAFELAARRTTDDD 304
Query: 303 --GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ-----AYGLTESTAGVF----- 350
             G DL ++ T+  G+  +   TI  FA +F +  L +     +Y L E+T  V      
Sbjct: 305 MAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPG 364
Query: 351 ---RTVGPDE----------CRRWGSTGRLSAGLE----AKIVDPETGDSLPPGKEGELS 393
               TV  D           C   G+T  +S  L      +IVD +T    P G  GE+ 
Sbjct: 365 QPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIW 424
Query: 394 IRGPTIMKGIF 404
           + G  +  G +
Sbjct: 425 VHGDNVANGYW 435

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 150/354 (42%), Gaps = 25/354 (7%)
Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D  AL     GLR++ +E   R  ++A+ L +   L       V++ NS ++ I   
Sbjct: 14  RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQI---QLSNPVIAFA--TSSVVHKLAKLKHRTILIDS 168
           +L  LG + +  NP    +E++  I   +++  VIA     +  + +      R I +  
Sbjct: 73  ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARIIFLGD 131
Query: 169 PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFAS 227
              D    S+    E  + +  Q   A I Y+SGTTG  K  ++  R   + V   S   
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV 189
Query: 228 SPKRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTHAA 286
             +     V+L  MP +H+ G F    AA AL  T VV++ F     L+ V++ +VT   
Sbjct: 190 GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLF 249
Query: 287 VTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
            TP  + A++   +  G    L SL  V    A +  D ++    +      V  YG TE
Sbjct: 250 ATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM-PDAVLETVHQHLPGEKVNIYGTTE 308
Query: 345 STAGVFRTVGPDECRRWGSTGRLSAGL--EAKIVDPETG--DSLPPGKEGELSI 394
           +   ++        R+  +   ++ G   E +IV    G  + +  G+EGEL +
Sbjct: 309 AMNSLY-------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIV 355

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 150/354 (42%), Gaps = 25/354 (7%)
Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D  AL     GLR++ +E   R  ++A+ L +   L       V++ NS ++ I   
Sbjct: 14  RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQI---QLSNPVIAFA--TSSVVHKLAKLKHRTILIDS 168
           +L  LG + +  NP    +E++  I   +++  VIA     +  + +      R I +  
Sbjct: 73  ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARIIFLGD 131
Query: 169 PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFAS 227
              D    S+    E  + +  Q   A I Y+SGTTG  K  ++  R   + V   S   
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV 189
Query: 228 SPKRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTHAA 286
             +     V+L  MP +H+ G F    AA AL  T VV++ F     L+ V++ +VT   
Sbjct: 190 GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLF 249
Query: 287 VTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
            TP  + A++   +  G    L SL  V    A +  D ++    +      V  YG TE
Sbjct: 250 ATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM-PDAVLETVHQHLPGEKVNIYGTTE 308
Query: 345 STAGVFRTVGPDECRRWGSTGRLSAGL--EAKIVDPETG--DSLPPGKEGELSI 394
           +   ++        R+  +   ++ G   E +IV    G  + +  G+EGEL +
Sbjct: 309 AMNSLY-------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIV 355

>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 169/431 (39%), Gaps = 74/431 (17%)
Query: 24  SLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLA 83
           +LR    L P D   +  DY          +D D VA+        +++S+  RRT ++A
Sbjct: 29  ALRACARLQPHDPAFTFXDYE---------QDWDGVAIT-------LTWSQLYRRTLNVA 72
Query: 84  SYLQNVTRL-SKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVN---TESEISRQIQ 139
              Q ++R  S  D   + +   +E  + +   L  G I  P +      T+      + 
Sbjct: 73  ---QELSRCGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLS 129
Query: 140 LSNPVIAFATSSVVHKLAKLKHRTILIDSP---EFDSMTMSWNSKHELDRAKVCQSDVAA 196
            S+PV    TSS V  + +   R      P   E D + +   + +     +   +  A 
Sbjct: 130 DSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPST--AY 187
Query: 197 IMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSP--AVMLFTMPYFHIYGLFF 251
           + Y+SG+T    GV+ +H+N+      + S + +    + P  + ++  +P++H  GL  
Sbjct: 188 LQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSALVSWLPFYHDXGLVI 247
Query: 252 CFRA-------AALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD-- 302
              A       A L      +QR      L A  +F    AA  P     ++   +TD  
Sbjct: 248 GICAPILGGYPAVLTSPVSFLQRPARWXHLXA-SDFHAFSAA--PNFAFELAARRTTDDD 304
Query: 303 --GYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ-----AYGLTESTAGVF----- 350
             G DL ++ T+  G+  +   TI  FA +F +  L +     +YGL E+T  V      
Sbjct: 305 XAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEATVYVATSKPG 364
Query: 351 ---RTVGPDE----------CRRWGSTGRLSAGLE----AKIVDPETGDSLPPGKEGELS 393
               TV  D           C   G+T  +S  L      +IVD +T    P G  GE+ 
Sbjct: 365 QPPETVDFDTESLSAGHAKPCAGGGATSLISYXLPRSPIVRIVDSDTCIECPDGTVGEIW 424
Query: 394 IRGPTIMKGIF 404
           + G  +  G +
Sbjct: 425 VHGDNVANGYW 435

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 150/354 (42%), Gaps = 25/354 (7%)
Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D  AL     GLR++ +E   R  ++A+ L +   L       V++ NS ++ I   
Sbjct: 14  RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQI---QLSNPVIAFA--TSSVVHKLAKLKHRTILIDS 168
           +L  LG + +  NP    +E++  I   +++  VIA     +  + +      R I +  
Sbjct: 73  ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS-GARIIFLGD 131
Query: 169 PEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFAS 227
              D    S+    E  + +  Q   A I Y+SGTTG  K  ++  R   + V   S   
Sbjct: 132 LVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV 189
Query: 228 SPKRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTHAA 286
             +     V+L  MP +H+ G F    AA AL  T VV++ F     L+ V++ +VT   
Sbjct: 190 GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLF 249
Query: 287 VTPPIVVAMSKGGSTDG--YDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
            TP  + A++   +  G    L SL  V    A +  D ++    +      V  YG TE
Sbjct: 250 ATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM-PDAVLETVHQHLPGEKVNIYGTTE 308
Query: 345 STAGVFRTVGPDECRRWGSTGRLSAGL--EAKIVDPETG--DSLPPGKEGELSI 394
           +   ++        R+  +   ++ G   E +IV    G  + +  G+EGEL +
Sbjct: 309 AMNSLY-------MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIV 355

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 144/372 (38%), Gaps = 38/372 (10%)
Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D++A+I+    L  S+ E  +  ++LA  L+    +   +TA V   N  E+ I +F+LL
Sbjct: 40  DSIAVIDGERQL--SYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALL 96
Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFAT------------SSVVHKLAKLKHRTI 164
            LGV    A   +  SE++       P +  A             ++ V + + ++   +
Sbjct: 97  KLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQL 156
Query: 165 LIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS 224
           L DS E +      +   +         +VA    S GTTG  K +  TH +   +V  S
Sbjct: 157 LNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRS 216
Query: 225 FASSPKRVSPAVMLFTMPYFHIY-----GLFFCFRAAALMETAVVMQRFDLKMMLKAVEE 279
                +       L  +P  H Y     G    F A     T V+       +    +E+
Sbjct: 217 VEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGG---TVVLAADPSATLCFPLIEK 272
Query: 280 FRVTHAAVTPPIV----VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335
            +V   A+ PP V     A+ +G S     L+SL+ +  G A L        A++ P  +
Sbjct: 273 HQVNVTALVPPAVSLWLQALIEGESR--AQLASLKLLQVGGARLSA----TLAARIPAEI 326
Query: 336 ---LVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
              L Q +G+ E      R     E         +    E  + D E G+ LP G+ G L
Sbjct: 327 GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAE-GNPLPQGEVGRL 385
Query: 393 SIRGPTIMKGIF 404
             RGP   +G +
Sbjct: 386 MTRGPYTFRGYY 397

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 145/380 (38%), Gaps = 53/380 (13%)
Query: 71  SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
           ++ +  +   ++A+ LQ        D   +L    + +   +   L  G I  P  P   
Sbjct: 42  TYEQLDQHAKAIAATLQ-AEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQ 100
Query: 131 E---SEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRA 187
           E    +  R +  S PVI    +  + K    +  T    +P+F  +        EL+R+
Sbjct: 101 EKLLDKAQRIVTNSKPVIVLXIADHIKKFTADELNT----NPKFLKIPAIALESIELNRS 156
Query: 188 KVCQ------SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFT- 240
              Q      +D+A + Y+SG+T   KGV ++H NL   +   F S     +   ++F+ 
Sbjct: 157 SSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSF--HXNDETIIFSW 214
Query: 241 MPYFHIYGLFFCFRAAALME-TAVVMQRFDLKM----MLKAVEEFRVTHAA---VTPPIV 292
           +P  H  GL  C          A+    F         LK + +++ T +          
Sbjct: 215 LPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYC 274
Query: 293 VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFP-----KVVLVQAYGLTESTA 347
           V   +    +G DLSS  T   GA P+ ++T   F   F      K      YGL E+T 
Sbjct: 275 VKRIREEKKEGLDLSSWVTAFNGAEPVREETXEHFYQAFKEFGFRKEAFYPCYGLAEATL 334
Query: 348 GV--------FRT------------VGPDECRRWGSTGRLSAG---LEAKIVDPETGDSL 384
            V        ++T            V   +    GS   +S+G    E KI+DP+T    
Sbjct: 335 LVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPC 394
Query: 385 PPGKEGELSIRGPTIMKGIF 404
              + GE+ ++  ++ KG +
Sbjct: 395 DFDQVGEIWVQSNSVAKGYW 414

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 13/244 (5%)
Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D  AL     GLR++ +E   R  ++A+ L +   L       V++ NS ++ I   
Sbjct: 14  RAPDHCALAVPARGLRLTHAELRARVEAVAARL-HADGLRPQQRVAVVAPNSADVVIAIL 72
Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILID 167
           +L  LG + +  NP    +E++  I+      A    +V  ++A          R I + 
Sbjct: 73  ALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVI--AVGRQVADAIFQSGSGARIIFLG 130
Query: 168 SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFA 226
               D    S+    E  + +  Q   A I Y+SGTTG  K  ++  R   + V   S  
Sbjct: 131 DLVRDGEPYSYGPPIEDPQREPAQP--AFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQ 188
Query: 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAA-ALMETAVVMQRFDLKMMLKAVEEFRVTHA 285
              +     V+L   P +H+ G F    AA AL  T VV++ F     L+ V++ +VT  
Sbjct: 189 VGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSL 248
Query: 286 AVTP 289
             TP
Sbjct: 249 FATP 252

>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol) Ligase Subunit-1 From Streptococcus Pyogenes Length = 521

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 136/353 (38%), Gaps = 35/353 (9%)
Query: 67  GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPAN 126
           G R ++ +  R ++S+A+++ ++  L+K+    V    + ++   + +L   G    P +
Sbjct: 27  GERRTYGQLKRDSDSIAAFIDSLALLAKS-PVLVFGAQTYDMLATFVALTKSGHAYIPVD 85
Query: 127 PVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMT---MSWNSKHE 183
             +    I   I+++ P +  A       +  +     L+   E +S     M +   H 
Sbjct: 86  VHSAPERILAIIEIAKPSLIIAIEEFPLTIEGIS----LVSLSEIESAKLAEMPYERTH- 140
Query: 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA----AVASSFASSPKRVSPAVMLF 239
                V   D   I+++SGTTG+ KGV ++H NL +     +  +    PK+     ML 
Sbjct: 141 ----SVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQ---MLA 193
Query: 240 TMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMMLKAVEEFRVTHAAVTPPIVVAMS 296
             PY     + +     AL  T   + +    D K +   + +  V     TP       
Sbjct: 194 QPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAM 253
Query: 297 KGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD 356
                    + +L         L   T      +FP   ++ AYG TE+T  +       
Sbjct: 254 LSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAI---- 309
Query: 357 ECRRW--GSTGRLSAGL-----EAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           E  R    +  RL  G         I+D E G  L  G++GE+ + GP + KG
Sbjct: 310 EITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKG 361

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 18/200 (9%)
Query: 167 DSPEFDSMTMSW-NSKHELDRA--KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS 223
           D+PE   ++ +W  +  E D A  +   +D+A + Y+SG+T   +GV++THR + A + +
Sbjct: 147 DNPELHVLSHAWFKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRA 206
Query: 224 SFASSPKRVSPAVMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLK----MMLKAVE 278
                 K       +  +P++H  GL  F     A   +   ++  D        LK + 
Sbjct: 207 ISHDGIKLRPGDRCVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLIS 266
Query: 279 EFRVTHAAVTPPIVVAMSKGGSTDG----YDLSSLETVACGAAPLGKDTIMAFASKFPKV 334
           + R T  +V PP    + +    +      DLS       GA P+  + +  FA  F +V
Sbjct: 267 KNRGT-VSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQV 325
Query: 335 -----VLVQAYGLTESTAGV 349
                     YGL E+   V
Sbjct: 326 NFDNKTFXPCYGLAENALAV 345

>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps) Adenylation Domains Length = 511

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 94/225 (41%), Gaps = 18/225 (8%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNL---TAAVASSFASSPKRVSPAVMLFTMPY-- 243
           V + +   I+Y+SG+TG  KGV ++  NL   T  + + F  S  ++     L   P+  
Sbjct: 140 VKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKI----FLNQAPFSF 195
Query: 244 -FHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIV--VAMSKGGS 300
              +  L+ C ++   +           K++ + +++  +     TP  V    M  G S
Sbjct: 196 DLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFS 255
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT-VGPDECR 359
            D   L   +T       L      A   +FPK  +   YG TE+T  V    +  D   
Sbjct: 256 QD--LLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313
Query: 360 RWGS--TGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           R  S   G     +   I+D E G  LP G++GE+ I GP++ +G
Sbjct: 314 RSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRG 357

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 144/356 (40%), Gaps = 46/356 (12%)
Query: 71  SFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNT 130
           ++ E   R    AS L+ +  +   +   ++  +++ +P+ +   L  GV+   AN + T
Sbjct: 50  TYGELEERARRFASALRTLG-VHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLT 108
Query: 131 ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELD----- 185
            ++    +  S+     A+ ++V  +      T  ++S E D   +  +   E +     
Sbjct: 109 PADYVYMLTHSHARAVIASGALVQNV------TQALESAEHDGCQLIVSQPRESEPRLAP 162
Query: 186 --------------RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL--TAAVAS----SF 225
                          A     D+A  +YSSG+TG+ KG + TH NL  TA + +      
Sbjct: 163 LFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGI 222
Query: 226 ASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTH 284
           A +    S A + F   Y    GL F     A   TA++M +R     +   + E R T 
Sbjct: 223 AENDVVFSAAKLFFA--YGLGNGLTFPLSVGA---TAILMAERPTADAIFARLVEHRPTV 277
Query: 285 AAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE 344
               P +   M    +       ++         L ++    F + F   +L    G TE
Sbjct: 278 FYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEIL-DGIGSTE 336
Query: 345 STAGVFRT--VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT 398
               +F +   G  E   +G+TGR   G E ++ D E G ++P G+ G+L I+GP+
Sbjct: 337 MLH-IFLSNRAGAVE---YGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPS 387

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 72/359 (20%), Positives = 142/359 (39%), Gaps = 36/359 (10%)
Query: 68  LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
           L  +F E +  +   A+ L     L + D   V+     E  ++    +  G+I  P   
Sbjct: 72  LMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTI 131
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT------ILIDSPEFDSMTMSWNSK 181
               ++I  ++Q+S      A   V+ ++  +          +L+     D      N K
Sbjct: 132 QMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWL---NFK 188
Query: 182 HELDRAKVCQ-------SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
             L+ A            + +AI ++SGT+G  K  M  H   +  + +   +    +  
Sbjct: 189 KLLNEASTTHHCVETGSQEASAIYFTSGTSGLPK--MAEHSYSSLGLKAKMDAGWTGLQA 246
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAV--------VMQRFDLKMMLKAVEEFRVTHAA 286
           + +++T+          C    +LME           ++ +FD  ++LK +  + +  + 
Sbjct: 247 SDIMWTISDTGWILNILC----SLMEPWALGACTFVHLLPKFDPLVILKTLSSYPI-KSM 301
Query: 287 VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
           +  PIV  M        Y    L+        L  +T+  + ++   + + ++YG TE+ 
Sbjct: 302 MGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQ-TGLDIRESYGQTET- 359
Query: 347 AGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-GPTIMKGIF 404
            G+   V      + G  G  ++  + +I+D + G+ LPPG EG++ IR  P    GIF
Sbjct: 360 -GLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIF 416

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/363 (20%), Positives = 144/363 (39%), Gaps = 44/363 (12%)
Query: 68  LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANP 127
           L  +F E +  +   A+ L     L + D   V+     E  ++    +  G+I  P   
Sbjct: 72  LMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTI 131
Query: 128 VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT------ILIDSPEFDSMTMSWNSK 181
               ++I  ++Q+S      A   V+ ++  +          +L+     D      N K
Sbjct: 132 QMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWL---NFK 188
Query: 182 HELDRAKVCQ-------SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
             L+ A            + +AI ++SGT+G  K  M  H   +  + +   +    +  
Sbjct: 189 KLLNEASTTHHCVETGSQEASAIYFTSGTSGLPK--MAEHSYSSLGLKAKMDAGWTGLQA 246
Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAV--------VMQRFDLKMMLKAVEEFRVTHAA 286
           + +++T+          C    +LME           ++ +FD  ++LK +  + +  + 
Sbjct: 247 SDIMWTISDTGWILNILC----SLMEPWALGACTFVHLLPKFDPLVILKTLSSYPI-KSM 301
Query: 287 VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES- 345
           +  PIV  M        Y    L+        L  +T+  + ++   + + ++YG TE+ 
Sbjct: 302 MGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQ-TGLDIRESYGQTETG 360
Query: 346 -TAGVFRT--VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-GPTIMK 401
            T  V +T  + P      G  G  ++  + +I+D + G+ LPPG EG++ IR  P    
Sbjct: 361 LTCMVSKTMKIKP------GYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPI 413
Query: 402 GIF 404
           GIF
Sbjct: 414 GIF 416

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 23/226 (10%)
Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-----FASSPKRVSPAVMLFTMPYFHIY 247
           D+A ++Y+SGTTG  KGV + H N+ A +A +     F+   + +    + F    + I+
Sbjct: 176 DMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVWEIW 235
Query: 248 GLFFCFRAAALMETAVVMQRFDLK---MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
           G F     A L    VV+  +  +     L  + +  VT    TP   +A+++     G 
Sbjct: 236 GAFST--GAEL----VVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGR 289
Query: 305 DLSSLETVACGA----APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRR 360
           D+S L  V  G     AP+ +    AF    P+  LV  YG+TE+T         +    
Sbjct: 290 DVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPR--LVNGYGITETTVFTTFEEITEAYLA 347
Query: 361 WGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
             ++  GR       ++V  + G  + PG+ GEL + G  + +G  
Sbjct: 348 QDASIIGRALPSFGTRVVG-DDGRDVAPGETGELWLSGAQLAEGYL 392

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 9/160 (5%)
Query: 64  SVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIIS 123
           + +G  +S+ E     N +A  LQ      K     + +  S+E+ I    +L  G    
Sbjct: 484 TYSGQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLKAGAAYL 542
Query: 124 PANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHR--TILIDSPEFDSMTMSWNSK 181
           P +P   E  IS  +  S          +  + A+L +   T+ ID          +  +
Sbjct: 543 PVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDD------QTRFEEQ 596
Query: 182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAV 221
                  +  +D A IMY+SGTTG+ KG + TH N+   V
Sbjct: 597 ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV 636

>pdb|3QOV|A Chain A, Crystal Structure Of A Hypothetical Acyl-Coa Ligase (Bt_0428) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A Resolution Length = 436

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 26/215 (12%)
Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHI---Y 247
           + D   I  SSGTTG    ++ +  +L      S+A+   R    V +     F     Y
Sbjct: 85  KRDGVRIHSSSGTTGNPTVIVHSQHDL-----DSWANLVARCLYXVGIRKTDVFQNSSGY 139
Query: 248 GLF-----FCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD 302
           G F     F + A  L    V     + K  +K + +F+ T     P   + +++    +
Sbjct: 140 GXFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEE 199
Query: 303 GYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPD---E 357
           G D   ++L+T+  GA P   +       K  + + V+AY    ++ G     GP    E
Sbjct: 200 GIDPRETTLKTLVIGAEPHTDEQ----RRKIERXLNVKAY----NSFGXTEXNGPGVAFE 251
Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
           C+              +I+DPETG+ +P G+ GEL
Sbjct: 252 CQEQNGXHFWEDCYLVEIIDPETGEPVPEGEIGEL 286

>pdb|2Y4N|A Chain A, Paak1 In Complex With Phenylacetyl Adenylate Length = 437

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 89/214 (41%), Gaps = 19/214 (8%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFH 245
           V Q  ++ I  SSGTTG+   V  T  ++      VA S  ++  R    V +       
Sbjct: 87  VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146
Query: 246 IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
             GL   + A     T +       +  ++ +++FR     VTP  +++++      G D
Sbjct: 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD 206
Query: 306 --LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP---DEC-- 358
              SSL     GA P   D  +A   +   +  V  YGL+E        +GP    EC  
Sbjct: 207 PVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSE-------VMGPGVASECVE 258
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
            + G T         +I+DPETG+ LP G+ GEL
Sbjct: 259 TKDGPT-IWEDHFYPEIIDPETGEVLPDGELGEL 291

>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non- Ribosomal Peptide Synthetase Length = 562

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 28/223 (12%)
Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFC-- 252
           A ++Y+SG+TG  KGV ++  NL     SSF+ +  ++   V   ++    + G F C  
Sbjct: 178 AYLLYTSGSTGTPKGVRVSRHNL-----SSFSDAWGKLIGNVAPKSLELGGV-GKFLCLA 231
Query: 253 -----------FRAAALMETAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
                      F A      AV  +R   L  + +   E  VTHA + P +   + + G 
Sbjct: 232 SRAFDVHIGEXFLAWRFGLCAVTGERLSXLDDLPRTFRELGVTHAGIVPSL---LDQTGL 288
Query: 301 TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECR 359
               D   L  +  G       T   ++S   +V LV  YG TE T G     + PD   
Sbjct: 289 VP-EDAPHLVYLGVGGEKXTPRTQQIWSSS-DRVALVNVYGPTEVTIGCSAGRILPDSDT 346
Query: 360 RWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           R    G       A ++ P + + +  G  GEL I G  +  G
Sbjct: 347 R--CIGHPLGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANG 387

>pdb|2Y27|A Chain A, Crystal Structure Of Paak1 In Complex With Atp From Burkholderia Cenocepacia Length = 437

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 87/214 (40%), Gaps = 19/214 (8%)
Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPAVMLFTMPYFH 245
           V Q  ++ I  SSGTTG+   V  T  ++      VA S  ++  R    V +       
Sbjct: 87  VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLF 146
Query: 246 IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
             GL   + A     T +       +  ++ +++FR     VTP   ++++      G D
Sbjct: 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIXVTPSYXLSIADEIERQGLD 206
Query: 306 --LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGP---DEC-- 358
              SSL     GA P   D  +A   +   +  V  YGL+E         GP    EC  
Sbjct: 207 PVQSSLRIGIFGAEPWTNDXRVAIEQRX-GIDAVDIYGLSE-------VXGPGVASECVE 258
Query: 359 RRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL 392
            + G T         +I+DPETG+ LP G+ GEL
Sbjct: 259 TKDGPT-IWEDHFYPEIIDPETGEVLPDGELGEL 291

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	409
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-135
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-134
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-131
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-130
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	1e-100
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	1e-76
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	4e-74
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	2e-72
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	3e-70
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	9e-69
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	1e-68
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	5e-68
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	9e-68
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	2e-66
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	8e-65
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	1e-40
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	1e-39
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	4e-38
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	6e-38
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	1e-32
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	8e-32
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	5e-27
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	6e-19
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-17
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-16
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	1e-15
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-15
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	1e-14
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	1e-12
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	2e-09
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	4e-09
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  411 bits (1058), Expect = e-135
 Identities = 130/423 (30%), Positives = 206/423 (48%), Gaps = 30/423 (7%)

Query: 2   EKKTPQLFDTKSGFNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVAL 61
           E+   Q+ + +S  N++   F S  P I +P     +S  DY+    +           L
Sbjct: 28  EQAVSQVMEKQSNNNNSDVIFRSKLPDIYIPNH---LSLHDYIFQNISEFA----TKPCL 80

Query: 62  INSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVI 121
           IN  TG   ++S+    +  +A+    +  +++ND   +L  N  E  + + +    G  
Sbjct: 81  INGPTGHVYTYSDVHVISRQIAANFHKL-GVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139

Query: 122 ISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPEFDSMTMS 177
            + ANP  T +EI++Q + SN  +    +  V K+  L++      + ID  E   +   
Sbjct: 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEG 199

Query: 178 WNSKHEL-----------DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA 226
                EL           D  ++   DV A+ YSSGTTG  KGVMLTH+ L  +VA    
Sbjct: 200 CLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVD 259

Query: 227 SSPKRVSPA---VMLFTMPYFHIYGLF-FCFRAAALMETAVVMQRFDLKMMLKAVEEFRV 282
                +      V+L  +P FHIY L         +    ++M +F++ ++L+ ++  +V
Sbjct: 260 GENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKV 319

Query: 283 THAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL 342
           T A + PPIV+A++K   T+ YDLSS+  V  GAAPLGK+   A  +KFP   L Q YG+
Sbjct: 320 TVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379

Query: 343 TESTAGVFRTVGPDE---CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI 399
           TE+   +  ++G  +     + G+ G +    E KIVDP+TGDSL   + GE+ IRG  I
Sbjct: 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQI 439

Query: 400 MKG 402
           MKG
Sbjct: 440 MKG 442

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  393 bits (1012), Expect = e-134
 Identities = 115/401 (28%), Positives = 187/401 (46%), Gaps = 28/401 (6%)

Query: 19  TKTFHSLRPPIDLPPEDAPISAVDYV-SSLRATLPWRDDDTVALINSVTGLRVSFSEFTR 77
              F S  P I +P     +    YV  +L             LIN   G   ++++   
Sbjct: 6   EFIFRSKLPDIYIPKN---LPLHSYVLENLS-----NHSSKPCLINGANGDVYTYADVEL 57

Query: 78  RTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQ 137
               +AS L  +  + + D   +   +S E  + +      G II+ ANP +T +E+++ 
Sbjct: 58  TARRVASGLNKI-GIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKH 116

Query: 138 IQLSNPVIAFATSSVVHKLAKLK----HRTILIDSPE-----FDSMTMSWNSKHELDRAK 188
            + S   +    +    K+         + + +DS       F  +T +   ++E  +  
Sbjct: 117 AKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCLHFSELTQA--DENEAPQVD 174

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA---VMLFTMPYFH 245
           +   DV A+ YSSGTTG  KGVMLTH+ L  +VA         +      V+L  +P FH
Sbjct: 175 ISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFH 234

Query: 246 IYGLFFCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY 304
           IY L         +    ++M +F++  +L  +E+++V+ A V PP++++++K    D +
Sbjct: 235 IYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKH 294

Query: 305 DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG---PDECRRW 361
           DLSSL  +  G APLGK+      +KFP+  L Q YG+TE+   +   +         + 
Sbjct: 295 DLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKP 354

Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           G+ G +    E KIVDPETG SLP  + GE+ IRG  IMKG
Sbjct: 355 GACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKG 395

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  386 bits (994), Expect = e-131
 Identities = 100/401 (24%), Positives = 179/401 (44%), Gaps = 28/401 (6%)

Query: 22  FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNS 81
                P   L       +A + +             T+A  ++   + ++++E+   +  
Sbjct: 8   KKGPAPFYPLED----GTAGEQLHK-AMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVR 62

Query: 82  LASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLS 141
           LA  ++    L+ N    V S NS++  +     L +GV ++PAN +  E E+   + +S
Sbjct: 63  LAEAMKRY-GLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNIS 121

Query: 142 NPVIAFATSSVVHKLAK------LKHRTILIDSPEFDSMTMSW------------NSKHE 183
            P + F +   + K+        +  + I++DS        S             N    
Sbjct: 122 QPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDF 181

Query: 184 LDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA--VMLFTM 241
           +  +      +A IM SSG+TG  KGV L HR      + +              +L  +
Sbjct: 182 VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVV 241

Query: 242 PYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
           P+ H +G+F            V+M RF+ ++ L++++++++  A + P +    +K    
Sbjct: 242 PFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLI 301

Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRW 361
           D YDLS+L  +A G APL K+   A A +F    + Q YGLTE+T+ +   + P+   + 
Sbjct: 302 DKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI--LITPEGDDKP 359

Query: 362 GSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           G+ G++    EAK+VD +TG +L   + GEL +RGP IM G
Sbjct: 360 GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 400

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  383 bits (986), Expect = e-130
 Identities = 100/408 (24%), Positives = 185/408 (45%), Gaps = 29/408 (7%)

Query: 15  FNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSE 74
             +        +P   +       SA   +   +    +     +A  N+VTG+  S++E
Sbjct: 4   MENDENIVVGPKPFYPIEE----GSAGTQL--RKYMERYAKLGAIAFTNAVTGVDYSYAE 57

Query: 75  FTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEI 134
           +  ++  L   LQN   L  +    + S N  E  I   + L +GV ++P N + T  E+
Sbjct: 58  YLEKSCCLGKALQNY-GLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLREL 116

Query: 135 SRQIQLSNPVIAFATSSVVHKLAKLKHRT------ILIDSPEFDSMTMSWNSKHELDRAK 188
              + +S P I F++   + K+  ++         +++DS          ++  + +   
Sbjct: 117 VHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPP 176

Query: 189 VC------------QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA--SSFASSPKRVSP 234
                         +  VA IM SSG+TG  KGV LTH N+    +         +    
Sbjct: 177 GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPG 236

Query: 235 AVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
             +L  +P+ H +G+F            V++ +FD +  LK +++++ T   + P +   
Sbjct: 237 TAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAI 296

Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
           ++K    + YDLS+L  +A G APL K+   A A +F    + Q YGLTE+T+ +   + 
Sbjct: 297 LNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAI--IIT 354

Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           P+   + G++G++    +AK++D +T  SL P + GE+ ++GP +MKG
Sbjct: 355 PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKG 402

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  307 bits (790), Expect = e-100
 Identities = 95/405 (23%), Positives = 159/405 (39%), Gaps = 39/405 (9%)

Query: 22  FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVT------GLRVSFSEF 75
           +    P +  P     IS  D + +          +  A+I++           ++F E 
Sbjct: 7   YKIGFPSLYYPK----ISLADRIDAAAEKFG----EKTAIISAEPKFPSEFPESMNFLEI 58

Query: 76  TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEIS 135
              T  LAS +     + K +   V   NSI+  +  ++L  +     P NP+    E+ 
Sbjct: 59  CEVTKKLASGISRK-GVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELE 117

Query: 136 RQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPEFDSMT--MSWNSKHELDRAKV 189
             +  S        S +      +  +T    + +   E +S++  M   S+   +    
Sbjct: 118 HILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSEDFENVKVN 177

Query: 190 CQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL 249
            + DVA I Y+ GTTG  KGVMLTH NL A       ++        ++  MP FH    
Sbjct: 178 PEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLS-HMDTIVGCMPMFHSAEF 236

Query: 250 ---FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGY 304
                           VVM  F+ +M+ + +E+++ T +   PP +  +      S   Y
Sbjct: 237 GLVNLMVTVGN---EYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTY 293

Query: 305 DLSSLETVACGAAPLGKDTIMAFASKF------PKVVLVQAYGLTESTAGVFRTVGP-DE 357
           D S L+  A GA P+    +             P++   Q +G+TE+   V  T  P   
Sbjct: 294 DWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMV--TTNPPLR 351

Query: 358 CRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             +  + G   + +E K++  E G  L  G+ GE+ IRGP I KG
Sbjct: 352 LDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKG 396

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  245 bits (627), Expect = 1e-76
 Identities = 88/356 (24%), Positives = 151/356 (42%), Gaps = 16/356 (4%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
            D   +A+  +  G ++S++E   R   +A+ L     L   D     +  S+E  +LY 
Sbjct: 14  DDPHKLAIETA-AGDKISYAELVARAGRVANVLVAR-GLQVGDRVAAQTEKSVEALVLYL 71

Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT---ILIDSPE 170
           + +  G +  P N   T  E+   I  + P I     S    +A +  +    +    P+
Sbjct: 72  ATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPD 131

Query: 171 FDSMTMSWNSKHELDRAKVCQS--DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS 228
                    +      A + +   D+AAI+Y+SGTTGR KG ML+H NL +   +     
Sbjct: 132 GRGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW 191

Query: 229 PKRVSPA-VMLFTMPYFHIYGLFFCFRAAALM-ETAVVMQRFDLKMMLKAVEEFRVTHAA 286
             R +P  V++  +P +H +GLF           + + + +FD   +L  +   R T   
Sbjct: 192 --RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA--RATVLM 247

Query: 287 VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
             P     + +           +     G+APL  DT   +++K     +++ YG+TE+ 
Sbjct: 248 GVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HAVLERYGMTETN 306

Query: 347 AGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
                    D  R  G+ G    G+ A++ DPETG  LP G  G + ++GP + KG
Sbjct: 307 MNTSNP--YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKG 360

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  238 bits (611), Expect = 4e-74
 Identities = 85/352 (24%), Positives = 145/352 (41%), Gaps = 13/352 (3%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
              A +   T +R+++++     N  A  L     ++K D   +L  NS+E   L++   
Sbjct: 31  RLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGAA 89

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT----ILIDSPEFD 172
            LG +  P N      E+S  +  S   +    +     +  ++ +      + D    D
Sbjct: 90  KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD 149

Query: 173 SMTMSWNSKHELDR-AKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR 231
           S+     S    +   +    D   IMY+SGTTG  KGV+ TH ++ +A +S  ++    
Sbjct: 150 SLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI--D 207

Query: 232 VSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP 290
           V     +L  +P FH+  L     +A    T + M +FD   +   + E RV      P 
Sbjct: 208 VRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPA 267

Query: 291 IVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF 350
           I+  M +       D         G AP+ +  I  +A+K   + +VQ Y LTES  G  
Sbjct: 268 ILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKN--IEVVQGYALTESCGGGT 325

Query: 351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             +  D  R+ GS GR +   +  +   + G     G EGE+ I+   ++K 
Sbjct: 326 LLLSEDALRKAGSAGRATMFTDVAVRGDD-GVIREHG-EGEVVIKSDILLKE 375

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  234 bits (599), Expect = 2e-72
 Identities = 87/354 (24%), Positives = 144/354 (40%), Gaps = 22/354 (6%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D  A +  V G+R++  ++  R   LAS L     +   D   +LS N  E+  L  ++ 
Sbjct: 21  DRTAFM--VDGVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVA 77

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSS-------VVHKLAKLKHRTILIDSP 169
            +G I+ P N      EI+  +    P +  A +        V+  L  +K    + D  
Sbjct: 78  LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS 137

Query: 170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP 229
              +      S       +   +D   I++++   GR +G +++  NL  A +S   +  
Sbjct: 138 GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW- 196

Query: 230 KRVSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVT 288
            R++ A V L  +P FH+ GL            +V+  +FD     + +E  +VT  A  
Sbjct: 197 -RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEF 255

Query: 289 PPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG 348
            P++  +          L+SL  V     P    TI  F +  P       +G +E++  
Sbjct: 256 APMLGNILD--QAAPAQLASLRAVTGLDTPE---TIERFEATCPNATFWATFGQSETSGL 310

Query: 349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
              T  P    R  S GR        +VD E    LPPG+ GE+ +RGPT+ KG
Sbjct: 311 S--TFAPYR-DRPKSAGRPLFWRTVAVVDAE-DRPLPPGEVGEIVLRGPTVFKG 360

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  229 bits (587), Expect = 3e-70
 Identities = 85/391 (21%), Positives = 144/391 (36%), Gaps = 40/391 (10%)

Query: 42  DYVSSLRATLPWRDD--------------DTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
           +   + R    W  +              D +A+         S+ E   R + LA+  Q
Sbjct: 11  ELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQ 68

Query: 88  NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
            +  + + D   V   N  E   + F+L  LG +   A P +  SEI+   + +      
Sbjct: 69  KL-GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127

Query: 148 ATSS------------VVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA 195
              +            V  KL  LK+  +  ++ EF  +         +   +V  SDVA
Sbjct: 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPL--EDLHTEPVKLPEVKSSDVA 185

Query: 196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFR 254
            +  S G+TG  K +  TH +   ++  S       +  + V L  +P  H Y L     
Sbjct: 186 FLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC--WLDHSTVYLAALPMAHNYPLSSPGV 243

Query: 255 AAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV 312
              L      V+            +E  +VT  A+ PP+ +      S+   DLSSL+ +
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303

Query: 313 ACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGL 371
             G A    +      + F    L Q +G+ E      R   P+E     + G+ +S   
Sbjct: 304 QVGGAKFSAEAARRVKAVFG-CTLQQVFGMAEGLVNYTRLDDPEE-IIVNTQGKPMSPYD 361

Query: 372 EAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           E+++ D      + PG+ G L  RGP  ++G
Sbjct: 362 ESRVWDD-HDRDVKPGETGHLLTRGPYTIRG 391

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  224 bits (574), Expect = 9e-69
 Identities = 79/356 (22%), Positives = 136/356 (38%), Gaps = 18/356 (5%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           D  AL     GLR++ +E   R  ++A+ L     L       V++ NS ++ I   +L 
Sbjct: 17  DHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALH 75

Query: 117 SLGVIISPANPVNTESEISRQIQLSNP--VIAFATSSVVHKLAKLKHRTILIDSPEFDSM 174
            LG + +  NP    +E++  I+       +      V   + +      +I   +    
Sbjct: 76  RLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRD 135

Query: 175 TMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSP 234
              ++    ++  +   +  A I Y+SGTTG  K  ++  R   + V         R   
Sbjct: 136 GEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR 195

Query: 235 A-VMLFTMPYFHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPI 291
             V+L  MP +H+ G  F    AAL    T VV++ F     L+ V++ +VT    TP  
Sbjct: 196 HNVVLGLMPLYHVVGF-FAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254

Query: 292 VVAM--SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV 349
           + A+  +   +     L SL  V    A +    +       P    V  YG TE+   +
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLP-GEKVNIYGTTEAMNSL 313

Query: 350 FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDS--LPPGKEGELSIRGP-TIMKG 402
              +      + G+        E +IV    G    +  G+EGEL +    +   G
Sbjct: 314 --YMRQ---PKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVG 364

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  227 bits (581), Expect = 1e-68
 Identities = 80/368 (21%), Positives = 138/368 (37%), Gaps = 26/368 (7%)

Query: 53  WRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY 112
               D++A+I+     ++S+ E  +  ++LA  L+    +   +TA V   N  E+ I +
Sbjct: 36  HAASDSIAVIDG--ERQLSYRELNQAADNLACSLRRQG-IKPGETALVQLGNVAELYITF 92

Query: 113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSS------------VVHKLAKLK 160
           F+LL LGV    A   +  SE++       P +  A                V + + ++
Sbjct: 93  FALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIR 152

Query: 161 HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
              +L DS E +      +   +         +VA    S GTTG  K +  TH +   +
Sbjct: 153 VVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYS 212

Query: 221 VASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALME--TAVVMQRFDLKMMLKAV 277
           V  S      + +     L  +P  H Y +         +   T V+       +    +
Sbjct: 213 VRRSVEIC--QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLI 270

Query: 278 EEFRVTHAAVTPPIVVAM--SKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVV 335
           E+ +V   A+ PP V     +         L+SL+ +  G A L         ++     
Sbjct: 271 EKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIG-CQ 329

Query: 336 LVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSAGLEAKIVDPETGDSLPPGKEGELSI 394
           L Q +G+ E      R     E +   + G  +    E  + D E G+ LP G+ G L  
Sbjct: 330 LQQVFGMAEGLVNYTRLDDSAE-KIIHTQGYPMCPDDEVWVADAE-GNPLPQGEVGRLMT 387

Query: 395 RGPTIMKG 402
           RGP   +G
Sbjct: 388 RGPYTFRG 395

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  222 bits (569), Expect = 5e-68
 Identities = 73/365 (20%), Positives = 138/365 (37%), Gaps = 38/365 (10%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
             +A+ +       ++       + LA  L    +  +     +   NSI+  IL  +  
Sbjct: 16  HHIAITDG--QESYTYQNLYCEASLLAKRL----KAYQQSRVGLYIDNSIQSIILIHACW 69

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTIL----------- 165
              + I+  N   T +E++ Q++  +  + F T  +  +  ++     +           
Sbjct: 70  LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNG 129

Query: 166 -------IDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLT 218
                  I     +   +   S   +        D+A+IM++SGTTG  K V  T RN  
Sbjct: 130 LLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHY 189

Query: 219 AAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAV 277
           A+      S           L  +P +HI GL    RA     T  ++ +F+ + +L  +
Sbjct: 190 ASAIGCKESL--GFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMI 247

Query: 278 EEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLV 337
           +  R+TH ++ P  +  + + G  + Y+L     +  G A L    I         + + 
Sbjct: 248 KNERITHISLVPQTLNWLMQQGLHEPYNLQK---ILLGGAKLSATMIETALQYN--LPIY 302

Query: 338 QAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
            ++G+TE+ +            R  + G  SA ++ KI +P           GEL I+G 
Sbjct: 303 NSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEG------HGELMIKGA 356

Query: 398 TIMKG 402
            +M G
Sbjct: 357 NVMNG 361

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  223 bits (570), Expect = 9e-68
 Identities = 79/393 (20%), Positives = 145/393 (36%), Gaps = 40/393 (10%)

Query: 42  DYVSSLRATLPWRDD--------------DTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
           +     R    W D                ++A+I      ++S+ E  R + +LA+ L 
Sbjct: 16  ERAQHYRNKGYWIDQPLTRILTVGVQSHPHSLAII--CGERQLSYIELDRLSTNLATRLA 73

Query: 88  NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
               L K DTA V   N  E  I++F+LL  GV++  A   + + E++  I+   P +  
Sbjct: 74  EKG-LGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLI 132

Query: 148 ATSS------------VVHKLAKLKHRTILIDSPEFDSMT--MSWNSKHELDRAKVCQSD 193
            +              +       +   +L        +   +   ++  +D +     +
Sbjct: 133 GSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAETFVDFSSTPADE 192

Query: 194 VAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFC 252
           VA    S G+TG  K +  TH +   +V +S       ++    +L  +P  H + L   
Sbjct: 193 VAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC--GLNSNTRLLCALPAPHNFMLSSP 250

Query: 253 FRAAALME--TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLE 310
                L      V+    +       ++  +V  A++ P  V+   +  +     + SL+
Sbjct: 251 GALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLK 310

Query: 311 TVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGR-LSA 369
            +  G A   +              L Q +G+ E      R    DE + + + GR +S+
Sbjct: 311 LLQVGGASFPESLARQVPEVLN-CKLQQVFGMAEGLVNYTRLDDSDE-QIFTTQGRPISS 368

Query: 370 GLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
             E KIVD      +P G+ G L+ RGP    G
Sbjct: 369 DDEIKIVDE-QYREVPEGEIGMLATRGPYTFCG 400

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  219 bits (560), Expect = 2e-66
 Identities = 84/394 (21%), Positives = 150/394 (38%), Gaps = 36/394 (9%)

Query: 28  PIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
            ++ PP     +   Y+  L  T         A I+       ++ E   R    AS L+
Sbjct: 15  TVEAPPAL--FNFAAYLFRLNETRA----GKTAYID--DTGSTTYGELEERARRFASALR 66

Query: 88  NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
            +  +   +   ++  +++ +P+ +   L  GV+   AN + T ++    +  S+     
Sbjct: 67  TL-GVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125

Query: 148 ATSSVVHKLAKLKH-----RTILIDSPEFDSMTMSWNSKHEL--------DRAKVCQSDV 194
           A+ ++V  + +           LI S   +S         EL          A     D+
Sbjct: 126 ASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDI 185

Query: 195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGL---- 249
           A  +YSSG+TG+ KG + TH NL    A  +A     ++   V+      F  YGL    
Sbjct: 186 AFWLYSSGSTGKPKGTVHTHANL-YWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGL 244

Query: 250 FFCFRAAALMETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
            F     A   TA++M +R     +   + E R T     P +   M    +       +
Sbjct: 245 TFPLSVGA---TAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVA 301

Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLS 368
           +         L ++    F + F    ++   G TE    +F +        +G+TGR  
Sbjct: 302 IRICTSAGEALPREIGERFTAHF-GCEILDGIGSTE-MLHIFLSNRAGA-VEYGTTGRPV 358

Query: 369 AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
            G E ++ D E G ++P G+ G+L I+GP+    
Sbjct: 359 PGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVM 391

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  214 bits (547), Expect = 8e-65
 Identities = 72/389 (18%), Positives = 143/389 (36%), Gaps = 38/389 (9%)

Query: 23  HSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSL 82
           H       +P      S      +L         D  AL        ++++E      + 
Sbjct: 7   HHHHSSGLVPRGSHMSSLFP---ALSPAPTGAPADRPALR--FGERSLTYAELAAAAGAT 61

Query: 83  ASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSN 142
           A       R+       V +T ++E  +   + L  GV   P NP + + E++  +  S 
Sbjct: 62  AG------RIGGAGRVAVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSA 115

Query: 143 P--VIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
           P  V+A   + +   L  L+   + + +               +        D A ++Y+
Sbjct: 116 PSLVLAPPDAELPPALGALERVDVDVRARG------------AVPEDGADDGDPALVVYT 163

Query: 201 SGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPYFHIYGLFFCFRAAALM 259
           SGTTG  KG ++  R L   + +   +   + +   V++  +P FH++GL          
Sbjct: 164 SGTTGPPKGAVIPRRALATTLDALADAW--QWTGEDVLVQGLPLFHVHGLVLGILGPLRR 221

Query: 260 -ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDG---YDLSSLETVACG 315
             +   + RF  +   + + +   T     P +   +++    D      L+    +  G
Sbjct: 222 GGSVRHLGRFSTEGAARELND-GATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSG 280

Query: 316 AAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKI 375
           +A L        A+      +++ YG+TE+      +V  D   R G+ G    G+E ++
Sbjct: 281 SAALPVHDHERIAAATG-RRVIERYGMTETLMNT--SVRADGEPRAGTVGVPLPGVELRL 337

Query: 376 VDPETGD--SLPPGKEGELSIRGPTIMKG 402
           V+ +     +L     GE+ +RGP +   
Sbjct: 338 VEEDGTPIAALDGESVGEIQVRGPNLFTE 366

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  149 bits (378), Expect = 1e-40
 Identities = 79/438 (18%), Positives = 146/438 (33%), Gaps = 68/438 (15%)

Query: 23  HSLRPPIDLPPEDAPISAVDYVSSLRATLPWR-----DDDTVALINSVTG-----LRVSF 72
           H       L P  + +S      SL A L         D     ++         + +++
Sbjct: 6   HHHHHSSGLVPRGSHMSV----RSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTW 61

Query: 73  SEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTES 132
           S+  RRT ++A  L         D   + +   +E  + +   L  G I  P +      
Sbjct: 62  SQLYRRTLNVAQELSRCGS--TGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGV 119

Query: 133 EISR---QIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSM-TMSWNSKHELDRAK 188
              R    +  S+PV    TSS V  + +   R      P    +  +  ++ +     +
Sbjct: 120 TDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGYTFKE 179

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA---AVASSFASSPKRVSPA--VMLFTMPY 243
                 A + Y+SG+T    GV+++H+N+      + S + +    + P    ++  +P+
Sbjct: 180 DEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPF 239

Query: 244 FHIYGLFFCF-------RAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPP----IV 292
           +H  GL             A L      +QR      +  +       +A  P     + 
Sbjct: 240 YHDMGLVIGICAPILGGYPAVLTSPVSFLQRPAR--WMHLMASDFHAFSAA-PNFAFELA 296

Query: 293 VAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKF-----PKVVLVQAYGLTESTA 347
              +      G DL ++ T+  G+  +   TI  FA +F      + V+  +Y L E+T 
Sbjct: 297 ARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATV 356

Query: 348 GV-----------------------FRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSL 384
            V                        +           S     +    +IVD +T    
Sbjct: 357 YVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSP-IVRIVDSDTCIEC 415

Query: 385 PPGKEGELSIRGPTIMKG 402
           P G  GE+ + G  +  G
Sbjct: 416 PDGTVGEIWVHGDNVANG 433

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  143 bits (364), Expect = 4e-38
 Identities = 62/379 (16%), Positives = 131/379 (34%), Gaps = 58/379 (15%)

Query: 54  RDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI 110
           +   + AL         L  +F E +  +   A+ L     L + D   V+     E  +
Sbjct: 55  KRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWL 114

Query: 111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH-----RTIL 165
           +    +  G+I  P       ++I  ++Q+S      A   V+ ++  +       R  L
Sbjct: 115 VILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKL 174

Query: 166 IDSPEFDSMTMSW-----NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAA 220
           + S +     +++      +       +    + +AI ++SGT+G  K    ++      
Sbjct: 175 LVSEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS----- 229

Query: 221 VASSFASSPKRVSPAVMLFTMPYFH----------------IYGLFFCFRAAALMETAVV 264
                       S  +       +                 I  +         +     
Sbjct: 230 ------------SLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTF 277

Query: 265 MQ---RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK 321
           +    +FD  ++LK +  + +       PIV  M        Y    L+        L  
Sbjct: 278 VHLLPKFDPLVILKTLSSYPIKSMM-GAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLP 336

Query: 322 DTIMAFASKFPKVVLVQAYGLTESTA--GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPE 379
           +T+  + ++   + + ++YG TE+     V +T+      + G  G  ++  + +I+D +
Sbjct: 337 ETLENWRAQT-GLDIRESYGQTETGLTCMVSKTMKI----KPGYMGTAASCYDVQIIDDK 391

Query: 380 TGDSLPPGKEGELSIRGPT 398
            G+ LPPG EG++ IR   
Sbjct: 392 -GNVLPPGTEGDIGIRVKP 409

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  143 bits (363), Expect = 6e-38
 Identities = 82/410 (20%), Positives = 145/410 (35%), Gaps = 60/410 (14%)

Query: 45  SSLRATLPWR-----DDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAF 99
            SL   +  R     +  +   +N      +++ +  +   ++A+ LQ        D   
Sbjct: 11  QSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVL 69

Query: 100 VLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISR---QIQLSNPVIAFATSSVVHKL 156
           +L    + +   +   L  G I  P  P   E  + +    +  S PVI    +  + K 
Sbjct: 70  LLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKF 129

Query: 157 AK--LKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH 214
               L      +  P     ++  N         +  +D+A + Y+SG+T   KGVM++H
Sbjct: 130 TADELNTNPKFLKIPAIALESIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSH 189

Query: 215 RNLTA---AVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCF-------RAAALMETAVV 264
            NL      + +SF  + +     ++   +P  H  GL  C          A +M     
Sbjct: 190 HNLLDNLNKIFTSFHMNDET----IIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSF 245

Query: 265 MQRFDLKMMLKAVEEFRVTHAAVTPP----IVVAMSKGGSTDGYDLSSLETVACGAAPLG 320
           +Q       LK + +++ T +   P       V   +    +G DLSS  T   GA P+ 
Sbjct: 246 LQN--PLSWLKHITKYKATISGS-PNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVR 302

Query: 321 KDTIMAFASKF-----PKVVLVQAYGLTESTAGV-FRTVGPDECRRWGSTGRLSAGL--- 371
           ++T+  F   F      K      YGL E+T  V   T G        +  +        
Sbjct: 303 EETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHF 362

Query: 372 -------------------EAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
                              E KI+DP+T       + GE+ ++  ++ KG
Sbjct: 363 ADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSNSVAKG 412

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score =  125 bits (315), Expect = 1e-32
 Identities = 43/244 (17%), Positives = 72/244 (29%), Gaps = 29/244 (11%)

Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR--VSPAVMLFTMPYF-HIY 247
                 +  S GTTG  K V+     + A ++   +    R        L  +P   HI 
Sbjct: 90  ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIV 149

Query: 248 GLFFCFRAAAL----------------------METAVVMQRFDLKMMLKAVEEFRVTHA 285
           G     RA  L                        T        +  +   +    +   
Sbjct: 150 GAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFL 209

Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK-FPKVVLVQAYGLTE 344
             TPP++  + K          SL  +  G   L  D I   AS+  P      +YG T 
Sbjct: 210 VTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTS 269

Query: 345 STAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
           +       +   E ++       S  +   +VD  T  ++  G+ G + +    +    F
Sbjct: 270 ALGVSRSLLITSESQQ-VIYDSFSPFITYDVVDSITAQTVEYGERGNVIVT--HLSPWAF 326

Query: 405 LPHF 408
            P  
Sbjct: 327 YPRV 330

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  125 bits (317), Expect = 8e-32
 Identities = 76/368 (20%), Positives = 145/368 (39%), Gaps = 52/368 (14%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
           R +++E  +R   L   L+ +  +   D    L  N       YF++  +G ++   +  
Sbjct: 47  RTTYAEVYQRARRLMGGLRALG-VGVGDRVATLGFNHFRHLEAYFAVPGMGAVL---HTA 102

Query: 129 NT---ESEISRQIQLSNPVIAFATSSVVHKLAKLKHRT------ILIDSP------EFDS 173
           N      EI+  +  +   +     +++  +  ++         +++D         ++ 
Sbjct: 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEE 162

Query: 174 MTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRN-----LTAAVASSFASS 228
                     +      +     + Y++GTTG  KGV+ +HR      L A++    A S
Sbjct: 163 ALGEEADPVRVP-----ERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALS 217

Query: 229 PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVM--QRFDLKMMLKAVEEFRVTHAA 286
            K     V+L  +P FH+      + AA L+    V+   R D   +++  +   VT  A
Sbjct: 218 EK----DVVLPVVPMFHVNAWCLPY-AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272

Query: 287 VTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTEST 346
             P + +A++    + G+ L +L  +  G +   +  I  F      V + Q YGLTE T
Sbjct: 273 GVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLTE-T 329

Query: 347 AGV---------FRTVGPDE-CRRWGSTGRLSAGLEAKIVDPETGDSLPP-GKE-GELSI 394
           + V           ++  +E       TG     +  ++ D E G  +P  GK  GE+ +
Sbjct: 330 SPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEE-GRPVPKDGKALGEVQL 388

Query: 395 RGPTIMKG 402
           +GP I  G
Sbjct: 389 KGPWITGG 396

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  112 bits (282), Expect = 5e-27
 Identities = 60/367 (16%), Positives = 120/367 (32%), Gaps = 67/367 (18%)

Query: 69  RVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPV 128
             +F +    ++  A++      + K D   +   +  +       L  LG I  PA  +
Sbjct: 86  IFTFKDLKYYSDKAANFFVKH-GIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHM 144

Query: 129 NTESEISRQIQLSNP--VIAFATSSVVHKLAKLKHRT------ILIDSPEFDSMTMSWNS 180
               +I  +I+ +    ++  A   V  ++ +                 +     + +  
Sbjct: 145 LKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFR- 203

Query: 181 KHELDRA-----------KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP 229
             EL+ +                D+  + +SSGT G  K V   +               
Sbjct: 204 -KELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGH--------- 253

Query: 230 KRVSPAVMLFTMPYFH----------------IYGLFFCFRAAALMETAVVM---QRFDL 270
                   + T  Y+                    ++       +   AV +    RF+ 
Sbjct: 254 --------ILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEA 305

Query: 271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK 330
           K ML+   ++ VT     PP +           Y+ S+L+       PL  +    F   
Sbjct: 306 KNMLEKASKYGVTTFC-APPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEF 364

Query: 331 FPKVVLVQAYGLTESTA--GVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGK 388
              + L++ +G TE+      F  + P    + GS G+ + G + +++D + G     G+
Sbjct: 365 T-GIKLMEGFGQTETVVTIATFPWMEP----KPGSIGKPTPGYKIELMDRD-GRLCEVGE 418

Query: 389 EGELSIR 395
           EGE+ I 
Sbjct: 419 EGEIVIN 425

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 87.7 bits (218), Expect = 6e-19
 Identities = 53/272 (19%), Positives = 95/272 (34%), Gaps = 29/272 (10%)

Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
           S   +AF   +    +       +L    +     +S     ++      ++  A ++Y+
Sbjct: 125 SRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNN-YPENLDAYLLYT 183

Query: 201 SGTTGRVKGVMLTHRNLTAAVAS------SFASSPKRVSPA--VMLFTMPYF--HIYGLF 250
           SG+TG  KGV ++  NL++   +      + A     +      +      F  HI  +F
Sbjct: 184 SGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMF 243

Query: 251 FCFRAAALMETAVVMQRFDLKM--MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
             +R         V       +  + +   E  VTHA + P    ++         D   
Sbjct: 244 LAWRFGL----CAVTGERLSMLDDLPRTFRELGVTHAGIVP----SLLDQTGLVPEDAPH 295

Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGST---G 365
           L  +  G   +   T   ++S   +V LV  YG TE T  +  + G         T   G
Sbjct: 296 LVYLGVGGEKMTPRTQQIWSSS-DRVALVNVYGPTEVT--IGCSAGR--ILPDSDTRCIG 350

Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
                  A ++ P + + +  G  GEL I G 
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGS 382

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 82.2 bits (204), Expect = 4e-17
 Identities = 53/274 (19%), Positives = 94/274 (34%), Gaps = 36/274 (13%)

Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
           S   +    + +       + +T+  +    +            D+  V + +   I+Y+
Sbjct: 98  SGAELLIHAAGLSIDAVGQQIQTVSAEELLENE-----GGSVSQDQW-VKEHETFYIIYT 151

Query: 201 SGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA- 256
           SG+TG  KGV ++     + T  + + F  S  ++    +    P        F F  + 
Sbjct: 152 SGSTGNPKGVQISAANLQSFTDWICADFPVSGGKI---FLNQA-P--------FSFDLSV 199

Query: 257 -----ALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
                 L     +           K++ + +++  +     TP  V             L
Sbjct: 200 MDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLL 259

Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST- 364
              +T       L      A   +FPK  +   YG TE+T  V    +  D   R  S  
Sbjct: 260 PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLP 319

Query: 365 -GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
            G     +   I+D E G  LP G++GE+ I GP
Sbjct: 320 VGFAKPDMNIFIMDEE-GQPLPEGEKGEIVIAGP 352

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 78.3 bits (194), Expect = 7e-16
 Identities = 51/259 (19%), Positives = 92/259 (35%), Gaps = 32/259 (12%)

Query: 155 KLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTH 214
            +  L  R +  D+ + D       +    + A V   +   I+Y+SG+TG  KGV +T+
Sbjct: 109 TVTDLPVRIVSEDNLK-DIFFTHKGNTPNPEHA-VKGDENFYIIYTSGSTGNPKGVQITY 166

Query: 215 R---NLTAAVASSFASSPKRVSPAVMLFTMPY------FHIYGLFFCFRAAALMETA-VV 264
               + T      F     +V    +    P+        IY         +L+    + 
Sbjct: 167 NCLVSFTKWAVEDFNLQTGQV---FLNQA-PFSFDLSVMDIYP--------SLVTGGTLW 214

Query: 265 M----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLG 320
                     K +  ++E+  +     TP          S     L +++T       L 
Sbjct: 215 AIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLP 274

Query: 321 KDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST--GRLSAGLEAKIVD 377
            +       +FPK  ++  YG TE+T  V    V  +   ++ S   G   +     I+ 
Sbjct: 275 NEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK 334

Query: 378 PETGDSLPPGKEGELSIRG 396
            + G   P G++GE+ I G
Sbjct: 335 ED-GTIAPDGEKGEIVIVG 352

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 78.4 bits (194), Expect = 1e-15
 Identities = 50/271 (18%), Positives = 83/271 (30%), Gaps = 33/271 (12%)

Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
           S          +  + A+L +    +     D  T       +   A +  +D A IMY+
Sbjct: 560 SAAACLLTHQEMKEQAAELPYTGTTLFI---DDQTRFEEQASDPATA-IDPNDPAYIMYT 615

Query: 201 SGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPY------FHIYGLFFCF 253
           SGTTG+ KG + TH N+   V           S     L    Y      F  Y      
Sbjct: 616 SGTTGKPKGNITTHANIQGLVKHVDYM---AFSDQDTFLSVSNYAFDAFTFDFYA----- 667

Query: 254 RAAALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSS 308
              +++  A +++       D + +   + +  V     T  +   ++         +  
Sbjct: 668 ---SMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLT---DAGEDWMKG 721

Query: 309 LETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGST-GR 366
           L  +  G        +           L+  YG TE T       V            G+
Sbjct: 722 LRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGK 781

Query: 367 LSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
             +     I++ E     P G  GEL I G 
Sbjct: 782 PISNASVYILN-EQSQLQPFGAVGELCISGM 811

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 75.6 bits (187), Expect = 5e-15
 Identities = 43/222 (19%), Positives = 74/222 (33%), Gaps = 26/222 (11%)

Query: 192 SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA--VMLFTMPY------ 243
            D   I+++SGTTG+ KGV ++H NL +        +   V     ++    PY      
Sbjct: 145 DDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQP-PYSFDLSV 203

Query: 244 FHIYGLFFCFRAAALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG 298
            +            L     +         D K +   + +  V     TP         
Sbjct: 204 MYWAP--------TLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLS 255

Query: 299 GSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDE 357
                  + +L         L   T      +FP   ++ AYG TE+T  +    +  + 
Sbjct: 256 DDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315

Query: 358 CRRWGST--GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
              +     G         I+D + G  L  G++GE+ + GP
Sbjct: 316 VDNYTRLPIGYPKPDSPTYIIDED-GKELSSGEQGEIIVTGP 356

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 74.8 bits (185), Expect = 1e-14
 Identities = 55/271 (20%), Positives = 94/271 (34%), Gaps = 41/271 (15%)

Query: 141 SNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYS 200
           S   +      +VH +  ++    +     F+  T+       L       +D+A ++Y+
Sbjct: 135 SQARMLLTQKHLVHLIHNIQFNGQVEI---FEEDTIKIREGTNLHVP-SKSTDLAYVIYT 190

Query: 201 SGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAA- 256
           SGTTG  KG ML H+   NL     +S   + K     +  F             F A+ 
Sbjct: 191 SGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDR---IGQFA-S--------ISFDASV 238

Query: 257 -----ALMETA-VVM----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDL 306
                AL+  A + +       D     + + +  +T   + P  VV +      D   +
Sbjct: 239 WEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERI 292

Query: 307 SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRRWGSTG 365
            S++T+    +      +  +     KV  + AYG TE+T          +        G
Sbjct: 293 LSIQTLITAGSATSPSLVNKW---KEKVTYINAYGPTETTICATTWVATKETIGHSVPIG 349

Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRG 396
                 +  IVD         G+ GEL I G
Sbjct: 350 APIQNTQIYIVDEN-LQLKSVGEAGELCIGG 379

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 68.3 bits (168), Expect = 1e-12
 Identities = 48/218 (22%), Positives = 76/218 (34%), Gaps = 27/218 (12%)

Query: 193 DVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPA-VMLFTMPY------FH 245
            +A I +SSGTTGR K +  TH  +T              +P    L   P         
Sbjct: 165 QIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFL---AFAPQMRFLVNSPLSFDAATLE 221

Query: 246 IYGLFFCFRAAALMETA-VVM---QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
           I+G        AL+     V+      D  ++ + + E     A +T  +   +      
Sbjct: 222 IWG--------ALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLV---DL 270

Query: 302 DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGV-FRTVGPDECRR 360
           D   L  L  +  G   L    +     + P++ LV  YG TE+T       V  D+   
Sbjct: 271 DPDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEE 330

Query: 361 WGST-GRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP 397
                G+  AG    ++D    +   P + GE+   G 
Sbjct: 331 DDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGA 368

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 57/223 (25%), Positives = 83/223 (37%), Gaps = 37/223 (16%)

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPA-VMLFTMPYF 244
           V Q  ++ I  SSGTTG+   V  T          VA S  ++         +  +    
Sbjct: 87  VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAG--ARRGDKVHVSYG-- 142

Query: 245 HIYGLF---FCFRAAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
             YGLF         A      V        +  ++ +++FR     VTP  +++++   
Sbjct: 143 --YGLFTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEI 200

Query: 300 STDGYDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA-GVFRTVGPD 356
              G D   SSL     GA P   D  +A   +   +  V  YGL+E    GV       
Sbjct: 201 ERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGLSEVMGPGVAS----- 254

Query: 357 ECRRWGSTGRLSAGLE-------AKIVDPETGDSLPPGKEGEL 392
           EC           G          +I+DPETG+ LP G+ GEL
Sbjct: 255 ECVETKD------GPTIWEDHFYPEIIDPETGEVLPDGELGEL 291

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 53/223 (23%), Positives = 79/223 (35%), Gaps = 37/223 (16%)

Query: 189 VCQSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPA-VMLFTMPYF 244
           V +  V  +  SSGTTG+   V  T R         A S  ++     P   +       
Sbjct: 89  VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAG--GRPGDTLHNAFG-- 144

Query: 245 HIYGLF---FCFRAAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG 299
             YGLF         A     +V  M     +  ++ + +F      VTP  ++ +    
Sbjct: 145 --YGLFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEM 202

Query: 300 STDGYDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPD 356
              G D   SSL+    GA P  +       ++   +  +  YGL+E    GV       
Sbjct: 203 VRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGLSEVMGPGVAC----- 256

Query: 357 ECRRWGSTGRLSAGLE-------AKIVDPETGDSLPPGKEGEL 392
           EC           G          +I+DP TG+ LP G +GEL
Sbjct: 257 ECVETKD------GPVIWEDHFYPEIIDPVTGEVLPDGSQGEL 293

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 48/221 (21%), Positives = 84/221 (38%), Gaps = 38/221 (17%)

Query: 191 QSDVAAIMYSSGTTGRVKGVMLTHR---NLTAAVASSFASSPKRVSPA-VMLFTMPYFHI 246
           + D   I  SSGTTG    ++ +     +    VA         +    V   +      
Sbjct: 85  KRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVG--IRKTDVFQNSSG---- 138

Query: 247 YGLF---FCFRAAALMETAVV--MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST 301
           YG+F     F+  A     +       + K  +K + +F+ T     P   + +++    
Sbjct: 139 YGMFTGGLGFQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQE 198

Query: 302 DGYDL--SSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTE-STAGVFRTVGPDEC 358
           +G D   ++L+T+  GA P   +           V    ++G+TE +  GV       EC
Sbjct: 199 EGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFGMTEMNGPGVAF-----EC 252

Query: 359 RRWGSTGRLSAGLE-------AKIVDPETGDSLPPGKEGEL 392
           +          G+         +I+DPETG+ +P G+ GEL
Sbjct: 253 QE-------QNGMHFWEDCYLVEIIDPETGEPVPEGEIGEL 286

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 62/410 (15%), Positives = 119/410 (29%), Gaps = 100/410 (24%)

Query: 9   FDTKSGFNSATKTFHSLRPPI--DLPPEDAPISAVDYVSSLRATLPWRD-DDTVALINSV 65
           F+T                    +   +D      D     ++ L   + D  +   ++V
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQ----DM---PKSILSKEEIDHIIMSKDAV 61

Query: 66  TGLRVSFSEF-TRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISP 124
           +G    F    +++   +  +++ V R+   +  F++S    E                P
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIKTEQ-------------RQP 105

Query: 125 ANPVNTESEISRQIQLSNPVIAFATSSV--VHKLAKLKHRTILIDSPEFDSMTMSWNSKH 182
           +  + T   I ++ +L N    FA  +V  +    KL  R  L+                
Sbjct: 106 S--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALL---------------- 145

Query: 183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMP 242
           EL  AK    +V  ++   G  G  K        +   V  S+    K          M 
Sbjct: 146 ELRPAK----NV--LID--GVLGSGKTW------VALDVCLSYKVQCK----------MD 181

Query: 243 YFHIYGLFF--CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS 300
            F I+ L    C     ++E   ++Q+   ++          +  +    + +   +   
Sbjct: 182 -FKIFWLNLKNCNSPETVLE---MLQKLLYQIDPNWTSR---SDHSSNIKLRIHSIQAEL 234

Query: 301 TD-----GY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV 353
                   Y   L  L  V             AF      ++  +   +T+  +    T 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQ------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 354 GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGI 403
              +      T      L  K +D    D LP     E+    P  +  I
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPR----EVLTTNPRRLSII 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	409
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.97
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.97
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	96.37
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	94.92
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	94.87
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.81
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	91.39
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	91.12
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	82.34

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=4.5e-61  Score=472.87  Aligned_cols=379  Identities=30%  Similarity=0.462  Sum_probs=326.3

Q ss_pred             CeeeecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEE
Q 015325           19 TKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTA   98 (409)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V   98 (409)
                      ..++++..+..+.|.   .+++.++|.++++++    |+++|+++..+++++||+||.++++++|++|++ .|+++||+|
T Consensus         6 ~~i~~~~~~~~~~p~---~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V   77 (536)
T 3ni2_A            6 EFIFRSKLPDIYIPK---NLPLHSYVLENLSNH----SSKPCLINGANGDVYTYADVELTARRVASGLNK-IGIQQGDVI   77 (536)
T ss_dssp             CCCBCCSSCCCCCCS---SCCHHHHHTTTGGGS----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEE
T ss_pred             ceEEecCCCCCCCCC---CCcHHHHHHHHhhcC----CCceEEEECCCCCEEEHHHHHHHHHHHHHHHHH-cCCCCCCEE
Confidence            345666667666664   389999999999999    999999997667899999999999999999999 999999999


Q ss_pred             EEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhh----cCCeEEEeCCC-----
Q 015325           99 FVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHRTILIDSP-----  169 (409)
Q Consensus        99 ~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~~~~~~~~-----  169 (409)
                      +++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+..    ...+++.++..     
T Consensus        78 ~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (536)
T 3ni2_A           78 MLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVMCVDSAPDGCL  157 (536)
T ss_dssp             EEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHTCEEEESSCCCTTCE
T ss_pred             EEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcCceEEEecCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999876554432    34556655432     


Q ss_pred             cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc----cCCCCCCCCEEEEeCchhh
Q 015325          170 EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA----SSPKRVSPAVMLFTMPYFH  245 (409)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~d~~l~~~p~~~  245 (409)
                      .+.++......  ........++++++|+|||||||.||||++||++++..+.....    .+ ...+.|++++.+|++|
T Consensus       158 ~~~~~~~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h  234 (536)
T 3ni2_A          158 HFSELTQADEN--EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL-YFHSEDVILCVLPMFH  234 (536)
T ss_dssp             ETHHHHTSCGG--GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSS-CCCTTCCEEECSCTTS
T ss_pred             CHHHHhhcccc--ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccc-cCCCCCEEEEecChHH
Confidence            12333222111  22333457899999999999999999999999999888766544    23 5788999999999999


Q ss_pred             HHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHH
Q 015325          246 IYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTI  324 (409)
Q Consensus       246 ~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~  324 (409)
                      .+++ ..++.++..|+++++.+.+++..+++.++++++|++.++|+++..+.+.......++++||.+++||+++++++.
T Consensus       235 ~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~  314 (536)
T 3ni2_A          235 IYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELE  314 (536)
T ss_dssp             HHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHH
Confidence            9999 668899999999999999999999999999999999999999999999877667788999999999999999999


Q ss_pred             HHHHHhCCCCceecccCcccccceecccC---CCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCcccc
Q 015325          325 MAFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMK  401 (409)
Q Consensus       325 ~~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~  401 (409)
                      ++|++.||++++++.||+||++..++...   ........+++|+|+++++++|+|+++|+++++|+.|||+|+|++++.
T Consensus       315 ~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~  394 (536)
T 3ni2_A          315 DTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMK  394 (536)
T ss_dssp             HHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCS
T ss_pred             HHHHHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccch
Confidence            99999999999999999999987654421   223345678999999999999999889999999999999999999999


Q ss_pred             ccCCCCC
Q 015325          402 GIFLPHF  408 (409)
Q Consensus       402 gY~~~~~  408 (409)
                      ||||+|+
T Consensus       395 GY~~~p~  401 (536)
T 3ni2_A          395 GYLNDPE  401 (536)
T ss_dssp             EETTCHH
T ss_pred             hhcCChh
Confidence            9999863

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.7e-59  Score=463.01  Aligned_cols=378  Identities=26%  Similarity=0.408  Sum_probs=313.4

Q ss_pred             eeeecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEE---eCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCC
Q 015325           20 KTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALI---NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKND   96 (409)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~---~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~   96 (409)
                      .++.+..|..+.+.    .|+.++|.++++++    |+++|++   +...++++||+||.++++++|++|++ .|+++||
T Consensus         6 ~~~~~~~~~~~~~~----~tl~~~l~~~a~~~----p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd   76 (550)
T 3rix_A            6 NIKKGPAPFYPLED----GTAGEQLHKAMKRY----ALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNH   76 (550)
T ss_dssp             GSEECCCCSSCCCC----SCHHHHHHHHHHHH----HTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTC
T ss_pred             ceeeCCCCCCCccc----CCHHHHHHHHHHhC----CCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHH-hCCCCCC
Confidence            34555566666665    99999999999999    8998875   55456899999999999999999999 9999999


Q ss_pred             EEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc------CCeEEEeCCC-
Q 015325           97 TAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSP-  169 (409)
Q Consensus        97 ~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~~-  169 (409)
                      +|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+...      -..++.++.. 
T Consensus        77 ~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (550)
T 3rix_A           77 RIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKT  156 (550)
T ss_dssp             EEEEECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSS
T ss_pred             EEEEEcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCc
Confidence            999999999999999999999999999999999999999999999999999998766554421      1223333321 


Q ss_pred             ------cchhhhcccCCc----ccc-cccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCE
Q 015325          170 ------EFDSMTMSWNSK----HEL-DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAV  236 (409)
Q Consensus       170 ------~~~~~~~~~~~~----~~~-~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~  236 (409)
                            .+.++.......    ... ......++++++|+|||||||.||||++||+++...+.......  ....+.++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~  236 (550)
T 3rix_A          157 DYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTA  236 (550)
T ss_dssp             CBTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred             cccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcE
Confidence                  122222211100    011 11122357899999999999999999999999988877766552  15788999


Q ss_pred             EEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecC
Q 015325          237 MLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGA  316 (409)
Q Consensus       237 ~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G  316 (409)
                      +++.+|++|.++++.++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.......++++||.+++||
T Consensus       237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG  316 (550)
T 3rix_A          237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG  316 (550)
T ss_dssp             EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECS
T ss_pred             EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEec
Confidence            99999999999998889999999999999999999999999999999999999999999998776677889999999999


Q ss_pred             CCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEec
Q 015325          317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG  396 (409)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g  396 (409)
                      +++++++.++|++.|+...+++.||+||+++.++..  .......+++|+|+++++++|+|+++|+++++|+.|||+|+|
T Consensus       317 ~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~--~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g  394 (550)
T 3rix_A          317 APLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT--PEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRG  394 (550)
T ss_dssp             SCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEEC--CTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEES
T ss_pred             CCCCHHHHHHHHHHcCCCccccccCcCccccceecC--CCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeC
Confidence            999999999999999544699999999998877653  334456789999999999999998899999999999999999


Q ss_pred             CccccccCCCCC
Q 015325          397 PTIMKGIFLPHF  408 (409)
Q Consensus       397 ~~v~~gY~~~~~  408 (409)
                      ++++.||||+|.
T Consensus       395 ~~v~~GY~~~~~  406 (550)
T 3rix_A          395 PMIMSGYVNNPE  406 (550)
T ss_dssp             TTSCSEETTCHH
T ss_pred             CCcchhhcCChh
Confidence            999999999863

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=7e-59  Score=458.12  Aligned_cols=378  Identities=26%  Similarity=0.383  Sum_probs=316.2

Q ss_pred             CCCeeeecCCCCCCCCCCCCCCCHHH-HHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCC
Q 015325           17 SATKTFHSLRPPIDLPPEDAPISAVD-YVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKN   95 (409)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g   95 (409)
                      +..|.+.+..+..+.|.   .+|+.+ +|.++++++     +++|+++...++++||+||.++++++|+.|++ .|+++|
T Consensus         7 ~~~~~~~~~~~~~~~p~---~~~l~~~~l~~~~~~~-----~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~g   77 (548)
T 2d1s_A            7 DENIVVGPKPFYPIEEG---SAGTQLRKYMERYAKL-----GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQN-YGLVVD   77 (548)
T ss_dssp             CTTSEECCCCSSCCCSS---CHHHHHHHHHHHHHHH-----TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTT
T ss_pred             CcceEecCCCCCCCCCC---cCcHHHHHHHhhhccc-----CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHH-cCCCCC
Confidence            34567777666555543   368888 888876543     78999985446899999999999999999999 999999


Q ss_pred             CEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc------CCeEEEeCCC
Q 015325           96 DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL------KHRTILIDSP  169 (409)
Q Consensus        96 ~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~------~~~~~~~~~~  169 (409)
                      |+|+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+...      ...++.++..
T Consensus        78 d~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (548)
T 2d1s_A           78 GRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSK  157 (548)
T ss_dssp             CEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCS
T ss_pred             CEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCc
Confidence            9999999999999999999999999999999999999999999999999999998766554321      2344444432


Q ss_pred             -------cchhhhcccCCcccccccccC-----C-CCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhcc---CCCCCC
Q 015325          170 -------EFDSMTMSWNSKHELDRAKVC-----Q-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFAS---SPKRVS  233 (409)
Q Consensus       170 -------~~~~~~~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~---~~~~~~  233 (409)
                             .+.++....... ........     + +++++|+|||||||.||||++||+++...+......   + +..+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~-~~~~  235 (548)
T 2d1s_A          158 VDYRGYQCLDTFIKRNTPP-GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGN-QVSP  235 (548)
T ss_dssp             SCBTTBCBHHHHHHHTSCT-TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSC-CCCT
T ss_pred             ccccccccHHHHHhcCccc-cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhcc-CCCc
Confidence                   233333322110 01111222     3 899999999999999999999999999888777666   4 5788


Q ss_pred             CCEEEEeCchhhHHhHHH-HHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCccee
Q 015325          234 PAVMLFTMPYFHIYGLFF-CFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETV  312 (409)
Q Consensus       234 ~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v  312 (409)
                      +|++++..|++|.+++.. ++.++ .|+++++.+.+++..+++.|+++++|++.++|+++..|.+.......++++||.+
T Consensus       236 ~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i  314 (548)
T 2d1s_A          236 GTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEI  314 (548)
T ss_dssp             TCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEE
T ss_pred             cceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEE
Confidence            999999999999999954 66677 9999999999999999999999999999999999999998866556678999999


Q ss_pred             eecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceE
Q 015325          313 ACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGEL  392 (409)
Q Consensus       313 ~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei  392 (409)
                      ++||+++++++.++|++.|+++++++.||+||++..++.  ........+++|+|+|+++++|+|+++|+++++|+.|||
T Consensus       315 ~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~--~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl  392 (548)
T 2d1s_A          315 ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIII--TPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEV  392 (548)
T ss_dssp             EECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE--CCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEE
T ss_pred             EEcCccCCHHHHHHHHHHcCCCceeeccccccccceeee--cCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEE
Confidence            999999999999999999988999999999999876665  223345678999999999999999889999999999999


Q ss_pred             EEecCccccccCCCCC
Q 015325          393 SIRGPTIMKGIFLPHF  408 (409)
Q Consensus       393 ~v~g~~v~~gY~~~~~  408 (409)
                      +|+|++++.||||+|.
T Consensus       393 ~v~g~~v~~GY~~~~~  408 (548)
T 2d1s_A          393 CVKGPMLMKGYVNNPE  408 (548)
T ss_dssp             EEESTTSCSEETTCHH
T ss_pred             EECCHHHhhhhcCChH
Confidence            9999999999999863

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=2.3e-59  Score=462.09  Aligned_cols=374  Identities=24%  Similarity=0.333  Sum_probs=316.6

Q ss_pred             eecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCC------ceeeHHHHHHHHHHHHHHhHhccCCCCC
Q 015325           22 FHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTG------LRVSFSEFTRRTNSLASYLQNVTRLSKN   95 (409)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~la~~L~~~~gv~~g   95 (409)
                      +++..|....|.    .|+.++|.++++++    ||++|+++.+.+      +++||+||.++++++|+.|++ .|+++|
T Consensus         7 ~~~~~p~~~~~~----~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~g   77 (549)
T 3g7s_A            7 YKIGFPSLYYPK----ISLADRIDAAAEKF----GEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISR-KGVRKG   77 (549)
T ss_dssp             SCCCCCCCCCCC----CCTTHHHHHHHHHH----TTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHH-TTCCTT
T ss_pred             eccCCCCCCcCC----CCHHHHHHHHHHhC----CCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHH-cCCCCC
Confidence            334455555655    89999999999999    999999987321      889999999999999999999 999999


Q ss_pred             CEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhh----cCCe-EEEeC--C
Q 015325           96 DTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----LKHR-TILID--S  168 (409)
Q Consensus        96 ~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~~~~-~~~~~--~  168 (409)
                      |+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+..    .... ++..+  .
T Consensus        78 d~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (549)
T 3g7s_A           78 EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEV  157 (549)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCCCC
Confidence            999999999999999999999999999999999999999999999999999999877655542    2232 23332  1


Q ss_pred             CcchhhhcccCCcccccccccCC-CCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHH
Q 015325          169 PEFDSMTMSWNSKHELDRAKVCQ-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIY  247 (409)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~  247 (409)
                      ..+.++......  ........+ +++++|+|||||||.||||++||+++...+......+ ++.+.|++++.+|++|.+
T Consensus       158 ~~~~~~~~~~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~  234 (549)
T 3g7s_A          158 NSLSEVMDSGSE--DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIVGCMPMFHSA  234 (549)
T ss_dssp             SCHHHHHHHSCS--CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEECCSCTTSHH
T ss_pred             cCHHHHHhcCcc--ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEEEeCcHHHHH
Confidence            234444433221  112223333 8999999999999999999999999999988887777 688999999999999999


Q ss_pred             hHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCC--CCCCCCcceeeecCCCCCHHHHH
Q 015325          248 GLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTD--GYDLSSLETVACGAAPLGKDTIM  325 (409)
Q Consensus       248 g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~--~~~l~~Lr~v~~~G~~~~~~~~~  325 (409)
                      ++..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.....  ..++++||.+++||+++++++.+
T Consensus       235 ~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~  314 (549)
T 3g7s_A          235 EFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVE  314 (549)
T ss_dssp             HHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHH
T ss_pred             HHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHH
Confidence            9966899999999999999999999999999999999999999999998764322  35688999999999999999999


Q ss_pred             HHHHh----C--CCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCcc
Q 015325          326 AFASK----F--PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTI  399 (409)
Q Consensus       326 ~~~~~----~--~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v  399 (409)
                      +|.+.    +  |++++++.||+||++..++... ........++|+|+++++++|+|+++|+++++|+.|||+|+||++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v  393 (549)
T 3g7s_A          315 KLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNP-PLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNI  393 (549)
T ss_dssp             HHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECC-GGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTS
T ss_pred             HHHHHHHhhcCCccccccceEeccccchhhhcCC-ccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcch
Confidence            99988    5  2389999999999988766532 222345688999999999999999999999999999999999999


Q ss_pred             ccccCCCCC
Q 015325          400 MKGIFLPHF  408 (409)
Q Consensus       400 ~~gY~~~~~  408 (409)
                      +.||||+|.
T Consensus       394 ~~GY~~~~~  402 (549)
T 3g7s_A          394 FKGYWKREK  402 (549)
T ss_dssp             CSEETTCTT
T ss_pred             hhhhCCChh
Confidence            999999875

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.6e-58  Score=452.67  Aligned_cols=358  Identities=17%  Similarity=0.236  Sum_probs=305.0

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      ||+.+.|.+.++++    |+++|+++.  ++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||++
T Consensus         1 m~l~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~e~~~~~la~~~   73 (512)
T 3fce_A            1 MKLLEQIEKWAAET----PDQTAFVWR--DAKITYKQLKEDSDALAHWISS-EYPDDRSPIMVYGHMQPEMIINFLGCVK   73 (512)
T ss_dssp             CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HSTTCCCCEEEEESSCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHC----CCceEEEeC--CceEEHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            68999999999999    999999998  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI  197 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  197 (409)
                      +|++++|+++.++.+++.++++++++++++++......  .......  ....+...................++++++|
T Consensus        74 ~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i  149 (512)
T 3fce_A           74 AGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVT--DLPVRIV--SEDNLKDIFFTHKGNTPNPEHAVKGDENFYI  149 (512)
T ss_dssp             TTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSS--CCSSEEE--ETHHHHHHHHHTTTCCCCGGGSCCTTSEEEE
T ss_pred             hCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccc--cccccee--chhhhhhhcccccccCCCccccCCCCCeEEE
Confidence            99999999999999999999999999999998543211  1112222  1112222221111111222334567999999


Q ss_pred             EcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHHHH
Q 015325          198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML  274 (409)
Q Consensus       198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~  274 (409)
                      +|||||||.||||++||+++...+......+ ++.++|++++..|++|.+++..++.++..|+++++.+.   +++..++
T Consensus       150 ~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~  228 (512)
T 3fce_A          150 IYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLF  228 (512)
T ss_dssp             EEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred             EECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHH
Confidence            9999999999999999999999998888888 78999999999999999999889999999999999976   6899999


Q ss_pred             HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325          275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG  354 (409)
Q Consensus       275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  354 (409)
                      +.++++++|++.++|+++..++.........+++||.+++||+++++++.++|.+.|+++++++.||+||+++.++....
T Consensus       229 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~  308 (512)
T 3fce_A          229 ASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHV  308 (512)
T ss_dssp             HHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEC
T ss_pred             HHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEe
Confidence            99999999999999999999998877777778999999999999999999999999999999999999999876654221


Q ss_pred             CC---CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       355 ~~---~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ..   ......++|+|+++++++|+| ++|+++++|+.|||+|+||+++.|||++|.
T Consensus       309 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~  364 (512)
T 3fce_A          309 TEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAPDGEKGEIVIVGPSVSVGYLGSPE  364 (512)
T ss_dssp             CHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCCTTSCEEEEEESTTSCSCBTTCHH
T ss_pred             ccccccccCCCccccccCCcEEEEEC-CCCCCCCCCCeEEEEEeccccChhhcCCch
Confidence            11   123567899999999999999 899999999999999999999999999863

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.1e-57  Score=478.05  Aligned_cols=385  Identities=33%  Similarity=0.483  Sum_probs=325.0

Q ss_pred             CCCCCeeeecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCC
Q 015325           15 FNSATKTFHSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSK   94 (409)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~   94 (409)
                      .......|++..|....|.   .+|+.++|.++++++    ||++|+++..+++++||+||.++++++|+.|++ .|+++
T Consensus        41 ~~~~~~~~~~~~~~~~~p~---~~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~-~Gv~~  112 (979)
T 3tsy_A           41 NNNSDVIFRSKLPDIYIPN---HLSLHDYIFQNISEF----ATKPCLINGPTGHVYTYSDVHVISRQIAANFHK-LGVNQ  112 (979)
T ss_dssp             ----CCCBCCSSCCCCCCT---TSCHHHHHTTTGGGT----TTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-TTCCT
T ss_pred             CCCCCceeecCCCCCCCCC---CCCHHHHHHHHHHhC----CCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHH-cCCCC
Confidence            3444556777777666653   489999999999999    999999997667899999999999999999999 99999


Q ss_pred             CCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHh----hcCCeEEEeCCC-
Q 015325           95 NDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSP-  169 (409)
Q Consensus        95 g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~-  169 (409)
                      ||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++.+....+.    .....++.++.. 
T Consensus       113 gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (979)
T 3tsy_A          113 NDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNE  192 (979)
T ss_dssp             TCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTSCCEEEECCCCT
T ss_pred             cCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcCCceEEEeCCcc
Confidence            999999999999999999999999999999999999999999999999999999986554433    224445554432 


Q ss_pred             ---------cchhhhcccCCc-ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc----cCCCCCCCC
Q 015325          170 ---------EFDSMTMSWNSK-HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA----SSPKRVSPA  235 (409)
Q Consensus       170 ---------~~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~----~~~~~~~~d  235 (409)
                               .+.++....... .........++++++|+|||||||.||||+++|+++...+.....    .+ ...+.|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~-~~~~~d  271 (979)
T 3tsy_A          193 SVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL-YFHSDD  271 (979)
T ss_dssp             TSCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSS-CCCSSC
T ss_pred             cccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccc-cCCCCC
Confidence                     122222221110 012223457899999999999999999999999999988776544    23 578899


Q ss_pred             EEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeee
Q 015325          236 VMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVAC  314 (409)
Q Consensus       236 ~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~  314 (409)
                      ++++.+|++|.+++ ..++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|.+.......++++||.+++
T Consensus       272 ~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~  351 (979)
T 3tsy_A          272 VILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKS  351 (979)
T ss_dssp             EEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEE
T ss_pred             EEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEE
Confidence            99999999999999 66789999999999999999999999999999999999999999999987766778899999999


Q ss_pred             cCCCCCHHHHHHHHHhCCCCceecccCcccccceecccC---CCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcce
Q 015325          315 GAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV---GPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE  391 (409)
Q Consensus       315 ~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~---~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Ge  391 (409)
                      ||+++++++.++|++.||++++++.||+||++..++...   ........+++|+|+++++++|+|+++|+++++|+.||
T Consensus       352 gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GE  431 (979)
T 3tsy_A          352 GAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGE  431 (979)
T ss_dssp             SSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEE
T ss_pred             cCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccE
Confidence            999999999999999999999999999999987655421   22334466889999999999999988999999999999


Q ss_pred             EEEecCccccccCCCCC
Q 015325          392 LSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       392 i~v~g~~v~~gY~~~~~  408 (409)
                      |+|+|++++.||||+|.
T Consensus       432 l~i~g~~v~~GY~~~p~  448 (979)
T 3tsy_A          432 ICIRGHQIMKGYLNNPA  448 (979)
T ss_dssp             EEEESTTSCSEETTCHH
T ss_pred             EEEECCCccccccCChh
Confidence            99999999999999863

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=1.2e-57  Score=446.18  Aligned_cols=357  Identities=17%  Similarity=0.210  Sum_probs=306.4

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      ||+.+.|.++++++    |+++|+++.  ++++||+||.++++++|++|++..|+++|++|+++++|+++++++++||++
T Consensus         1 m~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~   74 (511)
T 3e7w_A            1 MKLLHAIQTHAETY----PQTDAFRSQ--GQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVK   74 (511)
T ss_dssp             CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHC----CCCeEEEcC--CceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHH
Confidence            68999999999999    999999998  899999999999999999998734888999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI  197 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  197 (409)
                      +|++++|+++.++.+++.+++++++++++|++..............+     .+.++....... ........++++++|
T Consensus        75 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~a~i  148 (511)
T 3e7w_A           75 AGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVGQQIQTV-----SAEELLENEGGS-VSQDQWVKEHETFYI  148 (511)
T ss_dssp             HTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCCCSSCEE-----EHHHHHTSCSCC-CCGGGSCCTTSEEEE
T ss_pred             hCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhccccccee-----cHhhhhccccCC-ccccccCCCCCeEEE
Confidence            99999999999999999999999999999997543221111111111     122222221111 122234567899999


Q ss_pred             EcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHHHH
Q 015325          198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMML  274 (409)
Q Consensus       198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~  274 (409)
                      +|||||||.||||++||+++...+......+ +...+|++++..|++|.+++..++.++..|+++++.+.   +++..++
T Consensus       149 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~  227 (511)
T 3e7w_A          149 IYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLF  227 (511)
T ss_dssp             EEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHH
T ss_pred             EECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHH
Confidence            9999999999999999999999998888888 68999999999999999999889999999999999875   6899999


Q ss_pred             HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325          275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG  354 (409)
Q Consensus       275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  354 (409)
                      +.++++++|++.++|+++..++.........++++|.+++||+++++++.++|.+.||++++++.||+||+++.++....
T Consensus       228 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~  307 (511)
T 3e7w_A          228 EELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEI  307 (511)
T ss_dssp             HHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEE
T ss_pred             HHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEec
Confidence            99999999999999999999998877667778999999999999999999999999999999999999999876554221


Q ss_pred             CC---CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          355 PD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       355 ~~---~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ..   ......++|+|+++++++|+| ++|+++++|+.|||+|+||+++.|||++|.
T Consensus       308 ~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~  363 (511)
T 3e7w_A          308 TNDVISRSESLPVGFAKPDMNIFIMD-EEGQPLPEGEKGEIVIAGPSVSRGYLGEPE  363 (511)
T ss_dssp             CHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCCBTTCHH
T ss_pred             cccccccCCcCCCcceeCCCEEEEEC-CCCCCCCCCCceEEEEecCccChhhCCCcc
Confidence            11   223456799999999999999 789999999999999999999999999863

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=6.6e-58  Score=450.46  Aligned_cols=358  Identities=22%  Similarity=0.280  Sum_probs=302.0

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.++|.++++++    |+++|+++.  ++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||++
T Consensus        25 ~tl~~~l~~~a~~~----p~~~A~~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~   97 (539)
T 1mdb_A           25 ETFGDLLRDRAAKY----GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALFR   97 (539)
T ss_dssp             CCHHHHHHHHHHHH----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHC----CCCEEEEeC--CCcccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence            79999999999999    999999997  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH--------HHHh-hc-CCe-EEEeCC-CcchhhhcccCCccccc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA-KL-KHR-TILIDS-PEFDSMTMSWNSKHELD  185 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~-~~-~~~-~~~~~~-~~~~~~~~~~~~~~~~~  185 (409)
                      +|++++|+++.++.+++.+++++++++++|+++...        ..+. .. ..+ ++..+. ..+.++......  ...
T Consensus        98 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  175 (539)
T 1mdb_A           98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTE--PVK  175 (539)
T ss_dssp             HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCC--CCC
T ss_pred             cCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccchhhhhhcccc--ccc
Confidence            999999999999999999999999999999987531        1111 11 122 222222 223333222111  111


Q ss_pred             ccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHH--HHHHHHHhCCeEE
Q 015325          186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALMETAV  263 (409)
Q Consensus       186 ~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~--~~~~~l~~G~~~v  263 (409)
                      .....++++++|+|||||||.||||++||+++...+......+ ++.++|++++.+|++|.+++.  .++.++..|++++
T Consensus       176 ~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v  254 (539)
T 1mdb_A          176 LPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV  254 (539)
T ss_dssp             CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred             cCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence            2345678999999999999999999999999998888877777 688999999999999999984  6899999999999


Q ss_pred             EecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcc
Q 015325          264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT  343 (409)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  343 (409)
                      +.+.+++..+++.|+++++|++.++|+++..+++.......++++||.+++||+++++++.++|++.+ ++++++.||+|
T Consensus       255 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~T  333 (539)
T 1mdb_A          255 LSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGMA  333 (539)
T ss_dssp             ECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEECT
T ss_pred             ECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcEEEEEcCC
Confidence            99999999999999999999999999999999876544456789999999999999999999999999 89999999999


Q ss_pred             cccceecccCCCCCCCCCCccccccCCc-eEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          344 ESTAGVFRTVGPDECRRWGSTGRLSAGL-EAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       344 E~~~~~~~~~~~~~~~~~~s~G~p~~~~-~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      |++..++. .........+++|+|+++. +++|+| ++|+++++|+.|||+|+||+++.||||+|+
T Consensus       334 E~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~  397 (539)
T 1mdb_A          334 EGLVNYTR-LDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDVKPGETGHLLTRGPYTIRGYYKAEE  397 (539)
T ss_dssp             TSCEEECC-TTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSSCTTCHH
T ss_pred             CCcccccC-CCCcHHhcCCCCCcccCCCceEEEEC-CCCCCCcCCCcceEEeeCcccchhhcCChh
Confidence            96543322 1111122346899999765 899999 899999999999999999999999999863

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=3.8e-58  Score=449.90  Aligned_cols=361  Identities=23%  Similarity=0.280  Sum_probs=306.3

Q ss_pred             CCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHH
Q 015325           36 APISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSL  115 (409)
Q Consensus        36 ~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~  115 (409)
                      ...|+.++|.++++++    |+++|+++.+...++||+||.++++++|+.|++ .|+++||+|+++++|++++++++|||
T Consensus        14 ~~~~l~~~l~~~a~~~----p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~   88 (517)
T 3r44_A           14 KMKNIGWMLRQRATVS----PRLQAYVEPSTDVRMTYAQMNALANRCADVLTA-LGIAKGDRVALLMPNSVEFCCLFYGA   88 (517)
T ss_dssp             GGGCHHHHHHHHHHHS----TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHhC----CCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHH-cCCCCcCEEEEEcCCCHHHHHHHHHH
Confidence            3489999999999999    999999998334499999999999999999999 99999999999999999999999999


Q ss_pred             HHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----C--CeEE-EeCCCcchhhhcccCCcccccccc
Q 015325          116 LSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----K--HRTI-LIDSPEFDSMTMSWNSKHELDRAK  188 (409)
Q Consensus       116 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  188 (409)
                      +++|++++|+++.++.+++.+++++++++++|++......+...    .  ..++ ......+.+.......  ......
T Consensus        89 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  166 (517)
T 3r44_A           89 AKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLRSAAA--DEPAVE  166 (517)
T ss_dssp             HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEEHHHHHHHHHHCCC--CCCCCC
T ss_pred             HHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccCcccHHHHhhccCc--CCCCCC
Confidence            99999999999999999999999999999999998766554421    0  0111 1111122222222111  222334


Q ss_pred             cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCC
Q 015325          189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF  268 (409)
Q Consensus       189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~  268 (409)
                      ..++++++|+|||||||.||||++||+++...+......+ ++...|++++.+|++|.+++...+.++..|+++++.+.+
T Consensus       167 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~  245 (517)
T 3r44_A          167 CGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQF  245 (517)
T ss_dssp             CCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred             CCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCEEEEeCchHHHHHHHHHHHHHhcCeEEEEeCCC
Confidence            5679999999999999999999999999999998888888 789999999999999999996655666699999999999


Q ss_pred             CHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccce
Q 015325          269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG  348 (409)
Q Consensus       269 ~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~  348 (409)
                      ++..+++.++++++|++.++|+++..|.+.+.....++++||.+++||+++++++.++|.+.  ++++++.||+||+++.
T Consensus       246 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~~~YG~TE~~~~  323 (517)
T 3r44_A          246 DATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVVQGYALTESCGG  323 (517)
T ss_dssp             CHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECGGGTTC
T ss_pred             CHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEEEeecccccccc
Confidence            99999999999999999999999999998765555678899999999999999999999987  8999999999999886


Q ss_pred             ecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       349 ~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ++...........+++|+|+++++++|+| ++|++++.| .|||+|+|++++.|||++|.
T Consensus       324 ~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~  381 (517)
T 3r44_A          324 GTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIREHG-EGEVVIKSDILLKEYWNRPE  381 (517)
T ss_dssp             EEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEESSE-EEEEEEEETTSCSEETTCHH
T ss_pred             eeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCCCC-CeEEEEeCcchhhhhCCChh
Confidence            66544434456678999999999999999 899999999 89999999999999999863

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=1.6e-57  Score=444.13  Aligned_cols=356  Identities=25%  Similarity=0.362  Sum_probs=299.0

Q ss_pred             HHHhhccCCCCCCCCCCcEEEeC-CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCC
Q 015325           42 DYVSSLRATLPWRDDDTVALINS-VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGV  120 (409)
Q Consensus        42 ~~l~~~~~~~~~~~p~~~a~~~~-~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~  120 (409)
                      ++|...++++    |+++|+... .+++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+++|+
T Consensus         4 ~l~~~~a~~~----p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga   78 (503)
T 4fuq_A            4 NLFARLFDKL----DDPHKLAIETAAGDKISYAELVARAGRVANVLVA-RGLQVGDRVAAQTEKSVEALVLYLATVRAGG   78 (503)
T ss_dssp             CHHHHHHSCC----SCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHhC----CCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence            4566667777    888877631 236899999999999999999999 9999999999999999999999999999999


Q ss_pred             eEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHh----hcCCeEEEeCCCcchhhhcc-cCCcccccccccCCCCEE
Q 015325          121 IISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSPEFDSMTMS-WNSKHELDRAKVCQSDVA  195 (409)
Q Consensus       121 ~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a  195 (409)
                      +++|+++.++.+++.+++++++++++|++.+....+.    .....+..++......+... .............+++++
T Consensus        79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a  158 (503)
T 4fuq_A           79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATIDRGADDLA  158 (503)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTCEEEECCTTSCSHHHHHHHTSCSCCCCCCCCTTSEE
T ss_pred             EEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCceEEEecCCcccccchhhhcCCCCcCcCCCCCCCeE
Confidence            9999999999999999999999999999876543322    22334444432221111110 000112223345679999


Q ss_pred             EEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHH
Q 015325          196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMML  274 (409)
Q Consensus       196 ~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~  274 (409)
                      +|+|||||||.||||++||+++...+......+ ++.++|++++.+|++|.+++ ...+.++..|+++++.+.+++..++
T Consensus       159 ~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~  237 (503)
T 4fuq_A          159 AILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKIL  237 (503)
T ss_dssp             EEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHH
T ss_pred             EEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHH
Confidence            999999999999999999999999998888888 78999999999999999997 5678899999999999999999999


Q ss_pred             HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325          275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG  354 (409)
Q Consensus       275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  354 (409)
                      +.++  ++|++.++|+++..+++........+++||.+++||+++++++.++|.+.+ ++++++.||+||++..++.  .
T Consensus       238 ~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~--~  312 (503)
T 4fuq_A          238 DLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLERYGMTETNMNTSN--P  312 (503)
T ss_dssp             HHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEECCEETTTEECBCC--C
T ss_pred             HHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccceEcccccCccccc--C
Confidence            9998  899999999999999998776677789999999999999999999999998 8999999999999765433  3


Q ss_pred             CCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       355 ~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .......+++|+|+++++++|+|+++|+++++|+.|||+|+|++++.||||+|.
T Consensus       313 ~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~  366 (503)
T 4fuq_A          313 YDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPE  366 (503)
T ss_dssp             SSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHH
T ss_pred             CCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChh
Confidence            344556789999999999999999999999999999999999999999999863

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=2.2e-58  Score=448.45  Aligned_cols=355  Identities=19%  Similarity=0.221  Sum_probs=291.1

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCC-----CC--ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSV-----TG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI  110 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~-----~~--~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~  110 (409)
                      .++.++|.++++++    ||++|+++.+     ++  +++||+||.++++++|+.|++ .|+ +||+|+|+++|++++++
T Consensus        24 ~tl~~~l~~~a~~~----pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~e~~~   97 (480)
T 3t5a_A           24 RSLPAALRACARLQ----PHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSR-CGS-TGDRVVISAPQGLEYVV   97 (480)
T ss_dssp             CCHHHHHHHHHHHS----TTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTT-SSC-TTCEEEEECCSSHHHHH
T ss_pred             ccHHHHHHHHHHhC----CCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEcCCcHHHHH
Confidence            89999999999999    9999999752     12  789999999999999999999 896 99999999999999999


Q ss_pred             HHHHHHHhCCeEccCCC---CCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCC--------eEEEeCCCcchhhhcccC
Q 015325          111 LYFSLLSLGVIISPANP---VNTESEISRQIQLSNPVIAFATSSVVHKLAKLKH--------RTILIDSPEFDSMTMSWN  179 (409)
Q Consensus       111 ~~~A~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~  179 (409)
                      ++|||+++|++++|+++   .++.+++.+++++++++++|++.+....+.+...        .++..+.     ..... 
T Consensus        98 ~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-  171 (480)
T 3t5a_A           98 AFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL-----LDLDA-  171 (480)
T ss_dssp             HHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG-----SCTTC-
T ss_pred             HHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc-----ccccc-
Confidence            99999999999999999   7789999999999999999999987766654321        1222211     10110 


Q ss_pred             CcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCC------CCEEEEeCchhhHHhH-HHH
Q 015325          180 SKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVS------PAVMLFTMPYFHIYGL-FFC  252 (409)
Q Consensus       180 ~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~------~d~~l~~~p~~~~~g~-~~~  252 (409)
                       ..........++++++|+|||||||.||||++||+++...+......+ ....      .|++++.+|++|.+++ ..+
T Consensus       172 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~  249 (480)
T 3t5a_A          172 -PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADTDGIPPPNSALVSWLPFYHDMGLVIGI  249 (480)
T ss_dssp             -C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTTTTTCCCTTEEEEECCCTTSTTHHHHHT
T ss_pred             -ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-ccccccCCCCCCeEEEeCCCcCccHHHHHH
Confidence             012223345678999999999999999999999999998887776666 4555      8999999999999997 678


Q ss_pred             HHHHHhCCeEEEecCC----CHHHHHHHHHHhcceeEeechHHHHHHHhC----CCCCCCCCCCcceeeecCCCCCHHHH
Q 015325          253 FRAAALMETAVVMQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKG----GSTDGYDLSSLETVACGAAPLGKDTI  324 (409)
Q Consensus       253 ~~~l~~G~~~v~~~~~----~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~----~~~~~~~l~~Lr~v~~~G~~~~~~~~  324 (409)
                      +.++..|+++++.+..    ++..+++.++++++| +.++|+++..++..    ......++++||.+++||+++++++.
T Consensus       250 ~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~  328 (480)
T 3t5a_A          250 CAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATI  328 (480)
T ss_dssp             HHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHH
T ss_pred             HHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHH
Confidence            9999999999998753    899999999999999 88999988887763    23345678999999999999999999


Q ss_pred             HHHHHhC-----CCCceecccCcccccceecccCCCCC-----------------------CCCCCccccccCCceEEEe
Q 015325          325 MAFASKF-----PKVVLVQAYGLTESTAGVFRTVGPDE-----------------------CRRWGSTGRLSAGLEAKIV  376 (409)
Q Consensus       325 ~~~~~~~-----~~~~i~~~yG~tE~~~~~~~~~~~~~-----------------------~~~~~s~G~p~~~~~v~i~  376 (409)
                      ++|++.|     +++.+++.||+||++..++.......                       .....++|+|++ ++++|+
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~iv  407 (480)
T 3t5a_A          329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIV  407 (480)
T ss_dssp             HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEE
T ss_pred             HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEE
Confidence            9999998     45689999999999887665322111                       123458999999 999999


Q ss_pred             cCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          377 DPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       377 d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      |+++|++++.|+.|||+|+||+++.||||+|+
T Consensus       408 d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~pe  439 (480)
T 3t5a_A          408 DSDTCIECPDGTVGEIWVHGDNVANGYWQKPD  439 (480)
T ss_dssp             ETTTTEECCTTBCEEEEEESTTSCCCBTTBHH
T ss_pred             cCCCCcCCCCCCEEEEEEeCCccccccccCcc
Confidence            97779999999999999999999999999863

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.4e-56  Score=440.64  Aligned_cols=356  Identities=20%  Similarity=0.272  Sum_probs=293.2

Q ss_pred             CC-HHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           38 IS-AVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        38 ~~-~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      +| +.++|.+.++ +    |+++|++++  ++++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+
T Consensus        23 ~~~~~~~l~~~~~-~----p~~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~   94 (529)
T 2v7b_A           23 FNFAAYLFRLNET-R----AGKTAYIDD--TGSTTYGELEERARRFASALRT-LGVHPEERILLVMLDTVALPVAFLGAL   94 (529)
T ss_dssp             CCHHHHHHHHTGG-G----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSTHHHHHHHHHH
T ss_pred             eeHHHHHHHhhhc-c----CCceEEEeC--CCCccHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence            66 6777777777 8    999999987  6899999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----C--CeEEEeCCC--------cchhhhcccCCc
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----K--HRTILIDSP--------EFDSMTMSWNSK  181 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~--~~~~~~~~~--------~~~~~~~~~~~~  181 (409)
                      ++|++++|+++.++.+++.+++++++++++|++......+...     .  ..++..+..        .++++...... 
T Consensus        95 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  173 (529)
T 2v7b_A           95 YAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAP-  173 (529)
T ss_dssp             HHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCC-
T ss_pred             HcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCC-
Confidence            9999999999999999999999999999999998765544321     1  233333321        23333321111 


Q ss_pred             ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHH-HHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhC
Q 015325          182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNL-TAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALM  259 (409)
Q Consensus       182 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l-~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G  259 (409)
                       ........++++++|+|||||||.||||++||+++ ..........+ ++.+.|++++..|++|.+++ ..++.++..|
T Consensus       174 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G  251 (529)
T 2v7b_A          174 -AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDVVFSAAKLFFAYGLGNGLTFPLSVG  251 (529)
T ss_dssp             -CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCEEEESSCTTSHHHHHHHTHHHHHHT
T ss_pred             -cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcEEEEeecHHHHHHHHHHHHHHHhcC
Confidence             11223456789999999999999999999999999 55555544555 68899999999999999998 4578899999


Q ss_pred             CeEEEe-cCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325          260 ETAVVM-QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ  338 (409)
Q Consensus       260 ~~~v~~-~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  338 (409)
                      +++++. +.+++..+++.++++++|++.++|+++..+++..........+||.+++||+++++++.++|++.+ ++++++
T Consensus       252 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~i~~  330 (529)
T 2v7b_A          252 ATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCEILD  330 (529)
T ss_dssp             CEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCCEEE
T ss_pred             cEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCceee
Confidence            999988 568999999999999999999999999999987544332124899999999999999999999998 899999


Q ss_pred             ccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .||+||+++.++..  .......+++|+|+++++++|+| ++|+++++|+.|||+|+|++++.|||+++.
T Consensus       331 ~YG~TE~~~~~~~~--~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~  397 (529)
T 2v7b_A          331 GIGSTEMLHIFLSN--RAGAVEYGTTGRPVPGYEIELRD-EAGHAVPDGEVGDLYIKGPSAAVMYWNNRE  397 (529)
T ss_dssp             EEECTTTSSEEEEC--CTTCCCTTSCCEECTTCEEEEEC-TTSCBCCTTSCEEEEEECTTCCCCBTTCHH
T ss_pred             eEchhhcCceeecc--ccCCCccCCcccCCCCCEEEEEC-CCCCCCCCCCccEEEEecCCcccccCCChH
Confidence            99999997655442  22235678999999999999999 899999999999999999999999999863

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=1e-57  Score=449.67  Aligned_cols=360  Identities=21%  Similarity=0.249  Sum_probs=304.3

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      +.|+.++|.++++++    |+++|++++  ++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||+
T Consensus        29 ~~tl~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~  101 (544)
T 3o83_A           29 DQPLTRILTVGVQSH----PHSLAIICG--ERQLSYIELDRLSTNLATRLAE-KGLGKGDTALVQLPNVAEFYIVFFALL  101 (544)
T ss_dssp             CCCTTHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhC----CCceEEEcC--CCceeHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence            389999999999999    999999998  8899999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH--------HHHhhc--CCe-EEEeCCC----cchhhhcccCCc
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLAKL--KHR-TILIDSP----EFDSMTMSWNSK  181 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~~~--~~~-~~~~~~~----~~~~~~~~~~~~  181 (409)
                      ++|++++|+++.++.+++.+++++++++++|++....        ..+...  ... ++..+..    .+.++.......
T Consensus       102 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (544)
T 3o83_A          102 KAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIETPAET  181 (544)
T ss_dssp             HHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTTSEEHHHHHHSCCSS
T ss_pred             HhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCccccchhhhhhccccc
Confidence            9999999999999999999999999999999987542        122111  122 2233221    112222211111


Q ss_pred             ccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHH--HHHHHHHhC
Q 015325          182 HELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALM  259 (409)
Q Consensus       182 ~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~--~~~~~l~~G  259 (409)
                       ........++++++|+|||||||.||||++||+++...+......+ ++.+.|++++.+|++|.+++.  .++.++..|
T Consensus       182 -~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G  259 (544)
T 3o83_A          182 -FVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-GLNSNTRLLCALPAPHNFMLSSPGALGVLHAG  259 (544)
T ss_dssp             -CCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTT
T ss_pred             -ccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-CCCCCCeEEEecCcceEeecchHHHHHHHHcC
Confidence             1112345678999999999999999999999999999998888888 789999999999999999884  589999999


Q ss_pred             CeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecc
Q 015325          260 ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA  339 (409)
Q Consensus       260 ~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  339 (409)
                      +++++.+.+++..+++.|+++++|++.++|+++..+++.......++++||.+++||+++++++.++|++.+ ++++++.
T Consensus       260 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~~~~  338 (544)
T 3o83_A          260 GCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKLQQV  338 (544)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEEEEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcEEee
Confidence            999999999999999999999999999999999999987655555688999999999999999999999999 9999999


Q ss_pred             cCcccccceecccCCCCCCCCCCcccccc-CCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          340 YGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       340 yG~tE~~~~~~~~~~~~~~~~~~s~G~p~-~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ||+||++..++. ..........++|+|+ ++++++|+| ++|+++++|+.|||+|+||+++.|||++|.
T Consensus       339 YG~TE~~~~~~~-~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~  406 (544)
T 3o83_A          339 FGMAEGLVNYTR-LDDSDEQIFTTQGRPISSDDEIKIVD-EQYREVPEGEIGMLATRGPYTFCGYYQSPE  406 (544)
T ss_dssp             EECTTSCEEECC-TTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECTTSCSCCTTCHH
T ss_pred             eccccccceeec-CCCchhhccCCCceecCCCcEEEEEC-CCCCCCCCCCeeEEEEecCCcchhhcCChh
Confidence            999998754433 1222223346899996 899999999 999999999999999999999999999863

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=2e-56  Score=442.84  Aligned_cols=366  Identities=16%  Similarity=0.183  Sum_probs=302.9

Q ss_pred             CCCCCCCCCHH-HHHhhccCCCCCCCCCCcEEEeC---CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCC
Q 015325           31 LPPEDAPISAV-DYVSSLRATLPWRDDDTVALINS---VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI  106 (409)
Q Consensus        31 ~~~~~~~~~~~-~~l~~~~~~~~~~~p~~~a~~~~---~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~  106 (409)
                      ++.++ .+|+. +.|...++++    ||++|+++.   ..++++||+||.++++++|++|++ .|+++||+|+++++|++
T Consensus        49 ~~~~~-~~n~~~~~l~~~a~~~----pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~-~Gv~~Gd~V~l~~~~~~  122 (580)
T 3etc_A           49 ILVPE-NFNFAYDVVDVYARDS----PEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVK-HGIGKGDYVMLTLKSRY  122 (580)
T ss_dssp             BCCCS-SCCHHHHTHHHHHHHC----TTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECTTCT
T ss_pred             CCCcc-cchHHHHHHHHHHhhC----CCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCH
Confidence            34433 37887 8888888888    999999962   124689999999999999999999 99999999999999999


Q ss_pred             chHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH--HHHhh-------cCCeEEEeCCC------cc
Q 015325          107 EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--HKLAK-------LKHRTILIDSP------EF  171 (409)
Q Consensus       107 ~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~-------~~~~~~~~~~~------~~  171 (409)
                      +++++++||+++|++++|+++.++.+++.+++++++++++|++.+..  ..+.+       ....++.++..      .+
T Consensus       123 e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (580)
T 3etc_A          123 DFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDF  202 (580)
T ss_dssp             HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEH
T ss_pred             HHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccH
Confidence            99999999999999999999999999999999999999999987643  22221       11334444422      12


Q ss_pred             hhhhcccCCccccc--ccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH
Q 015325          172 DSMTMSWNSKHELD--RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL  249 (409)
Q Consensus       172 ~~~~~~~~~~~~~~--~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~  249 (409)
                      .+............  .....++|+++|+|||||||.||+|.++|++++..+....... ...+.+++++..|++|..+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  281 (580)
T 3etc_A          203 RKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NVEDDGLHYTVADSGWGKCV  281 (580)
T ss_dssp             HHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CCCTTCEEEECCCTTSTHHH
T ss_pred             HHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CCCCCceEEEeCChHHHHHH
Confidence            22222221110111  1245679999999999999999999999999888777766666 68899999999999998887


Q ss_pred             H-HHHHHHHhCCeEEEe--cCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHH
Q 015325          250 F-FCFRAAALMETAVVM--QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMA  326 (409)
Q Consensus       250 ~-~~~~~l~~G~~~v~~--~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~  326 (409)
                      + .++.++..|+++++.  ..+++..+++.|+++++|+++++|+++..|.+. .....++++||.+++||+++++++.++
T Consensus       282 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~  360 (580)
T 3etc_A          282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNR  360 (580)
T ss_dssp             HHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHH
T ss_pred             HHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHH
Confidence            4 578899999999988  468999999999999999999999999999986 344567899999999999999999999


Q ss_pred             HHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEec-----Ccccc
Q 015325          327 FASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRG-----PTIMK  401 (409)
Q Consensus       327 ~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g-----~~v~~  401 (409)
                      |.+.+ ++++++.||+||++..++.  ........+++|+|+|+++++|+| ++|+++++|+.|||+|+|     ++++.
T Consensus       361 ~~~~~-g~~i~~~YG~TE~~~~~~~--~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~~~g~~GEl~v~~~~g~~~~~~~  436 (580)
T 3etc_A          361 FLEFT-GIKLMEGFGQTETVVTIAT--FPWMEPKPGSIGKPTPGYKIELMD-RDGRLCEVGEEGEIVINTMEGKPVGLFV  436 (580)
T ss_dssp             HHHHH-SCCCEEEECCTTSSCCEEC--CTTSCCCTTCCBEECTTCEEEEEC-TTSCBCCTTCCEEEEEECTTCCCTTCCC
T ss_pred             HHHHh-CCeEecccccccccceeec--CCCCCCCCCccccCCCCCEEEEEC-CCCCCCCCCCceEEEEecCCCCCCeeec
Confidence            99988 8999999999999876655  233456778999999999999999 789999999999999997     78999


Q ss_pred             ccCCCCC
Q 015325          402 GIFLPHF  408 (409)
Q Consensus       402 gY~~~~~  408 (409)
                      |||++|+
T Consensus       437 gY~~~p~  443 (580)
T 3etc_A          437 HYGKDPE  443 (580)
T ss_dssp             EETTCHH
T ss_pred             cccCCHh
Confidence            9999874

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=5.1e-57  Score=449.56  Aligned_cols=349  Identities=17%  Similarity=0.133  Sum_probs=295.6

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      ..++.+.|.++++++    ||++|+++.  ++++||+||.++++++|++|++ .|+++|++|+++++|+++++++++||+
T Consensus        26 ~~tl~~~~~~~a~~~----Pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vva~lail   98 (620)
T 4dg8_A           26 HPTVVARFSEMAALH----PHREAIRDR--FGSVDYRQLLDSAEQLSDYLLE-HYPQPGVCLGVYGEYSRESITCLLAIL   98 (620)
T ss_dssp             SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HCCSSCCEEEEESSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhC----CCCeEEEcC--CCcCcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            478999999999999    999999998  7899999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA  196 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (409)
                      ++|++++|+++.++.+++.++++++++++++++........  ........     ...   ............++++++
T Consensus        99 kaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~--~~~~~~~~-----~~~---~~~~~~~~~~~~~~d~a~  168 (620)
T 4dg8_A           99 LSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPAN--GLPCVPVR-----HLP---AAPASVARPCFAADQIAY  168 (620)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCT--TSCEEEGG-----GCC---CCCCCSSCCCCCTTSEEE
T ss_pred             HhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCccccccc--CCceeeec-----cCC---cCCccccCCCCCCCCeEE
Confidence            99999999999999999999999999999997654322111  11111111     000   000111223346799999


Q ss_pred             EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec--CCCHHHHH
Q 015325          197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML  274 (409)
Q Consensus       197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~--~~~~~~~~  274 (409)
                      |+|||||||.||||+++|+++.+.+.. ...+ .+.+.+++++..|++|..+++.++.++..|+++++.+  .+++..++
T Consensus       169 iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~  246 (620)
T 4dg8_A          169 INFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLR  246 (620)
T ss_dssp             EEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHH
T ss_pred             EEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHH
Confidence            999999999999999999999876654 3444 6889999999999999999988999999999999974  57999999


Q ss_pred             HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325          275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG  354 (409)
Q Consensus       275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  354 (409)
                      +.|+++++|++.++|+++..+.+..   ...+++||.+++|||++++++.+++.+.+++++++|.||+||++..++....
T Consensus       247 ~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~  323 (620)
T 4dg8_A          247 QLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVV  323 (620)
T ss_dssp             HHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred             HHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEec
Confidence            9999999999999999999998743   2357899999999999999999999999889999999999999876554222


Q ss_pred             --CCCCCCCCccccccCCceEEEecCCCCCC-CCCCCcceEEEecCccccccCCCCC
Q 015325          355 --PDECRRWGSTGRLSAGLEAKIVDPETGDS-LPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       355 --~~~~~~~~s~G~p~~~~~v~i~d~~~g~~-~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                        ........++|+|+++++++|+| +++++ ++.|+.|||+|+|+++++||||+|.
T Consensus       324 ~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~  379 (620)
T 4dg8_A          324 TDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEIAEPDRAGEIVAFGAGLAQGYRNDAA  379 (620)
T ss_dssp             CTGGGGSSSCCCBEECTTEEEEEEC-TTSCBCCSSSCCEEEEEEETTCCSEETTCHH
T ss_pred             cccccCCCCCCceecccCcEEEEEC-ccCCCCCCCCCceEEEEeccccccccCCChh
Confidence              22234567899999999999999 67766 8999999999999999999999863

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.5e-56  Score=438.23  Aligned_cols=354  Identities=23%  Similarity=0.303  Sum_probs=301.2

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      ++|+.+.|.++++++    ||++|++++  ++++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+
T Consensus         5 ~~tl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~   77 (509)
T 3ivr_A            5 DFTLADVYRRNAALF----PDRTAFMVD--GVRLTHRDYLARAERLASGLLR-DGVHTGDRVAILSQNCSEMIELIGAVA   77 (509)
T ss_dssp             CCCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHC----CCceEEEEC--CcEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHH
Confidence            389999999999999    999999998  8999999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhh----c-CC-eEEEeCC--CcchhhhcccCCcccccccc
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAK----L-KH-RTILIDS--PEFDSMTMSWNSKHELDRAK  188 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~----~-~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~  188 (409)
                      ++|++++|+++.++.+++.+++++++++++|++.+....+..    . .. .++.++.  ..+..+..... ........
T Consensus        78 ~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  156 (509)
T 3ivr_A           78 LIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLAS-DTPFSAPE  156 (509)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSSCEEGGGTCC-CSCCCCCC
T ss_pred             HhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcChhhHhhccC-CCCCCcCC
Confidence            999999999999999999999999999999999886655221    1 11 2333322  12222222111 11222345


Q ss_pred             cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCC
Q 015325          189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF  268 (409)
Q Consensus       189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~  268 (409)
                      ..++++++|+|||||||.||||++||+++...+......+ ++.+.|++++.+|++|.+++...+.++..|++.++...+
T Consensus       157 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~  235 (509)
T 3ivr_A          157 FGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAAKF  235 (509)
T ss_dssp             CCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSC
T ss_pred             CCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEeccc
Confidence            6789999999999999999999999999999998888888 789999999999999999997777777777777777788


Q ss_pred             CHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccce
Q 015325          269 DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAG  348 (409)
Q Consensus       269 ~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~  348 (409)
                      ++..+++.|+++++|++.++|+++..+++..  ....+++||.++.+|++   ++.+++.+.+|++++++.||+||+++.
T Consensus       236 ~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~  310 (509)
T 3ivr_A          236 DPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGL  310 (509)
T ss_dssp             CHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEE
T ss_pred             CHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccc
Confidence            9999999999999999999999999999875  34457899999999987   899999999999999999999999876


Q ss_pred             ecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          349 VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       349 ~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ++....   .....++|+|+++++++|+| ++|+++++|+.|||+|+|++++.|||++|.
T Consensus       311 ~~~~~~---~~~~~~~G~p~~~~~~~i~d-~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~  366 (509)
T 3ivr_A          311 STFAPY---RDRPKSAGRPLFWRTVAVVD-AEDRPLPPGEVGEIVLRGPTVFKGYWNNAA  366 (509)
T ss_dssp             EEEEEG---GGSTTSCCEECTTCEEEEEC-TTSCBCCTTCCEEEEEESTTSCCEETTCHH
T ss_pred             cccCcc---ccCCCcccccCCCcEEEEEC-CCCCCCCCCCceEEEEecCCccccccCCHH
Confidence            655322   12234599999999999999 789999999999999999999999999863

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=9e-57  Score=442.60  Aligned_cols=358  Identities=20%  Similarity=0.300  Sum_probs=298.3

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeC--CCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINS--VTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~--~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      +.|+.++|.++++++    |+++|+++.  ..++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++|
T Consensus        17 ~~~l~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA   91 (541)
T 1v25_A           17 ELNLWDFLERAAALF----GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAYFA   91 (541)
T ss_dssp             CCCTHHHHHHHHHHS----TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhC----CCceEEEEecCCCCceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            378999999999999    999999952  225789999999999999999999 9999999999999999999999999


Q ss_pred             HHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CC-eEEEeCCC------cchhhhcccCCcc
Q 015325          115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP------EFDSMTMSWNSKH  182 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~------~~~~~~~~~~~~~  182 (409)
                      |+++|++++|+++.++.+++.+++++++++++|++.+....+...     .. .++.++..      .+.++.....   
T Consensus        92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  168 (541)
T 1v25_A           92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA---  168 (541)
T ss_dssp             HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCC---
T ss_pred             HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccC---
Confidence            999999999999999999999999999999999998766554321     12 23333321      1222222111   


Q ss_pred             cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHh--hccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCC
Q 015325          183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS--FASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALME  260 (409)
Q Consensus       183 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~--~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~  260 (409)
                        ......++++++|+|||||||.||||++||+++.......  ...+ .+.+.|++++.+|++|.+++..++.++..|+
T Consensus       169 --~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~  245 (541)
T 1v25_A          169 --DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDVVLPVVPMFHVNAWCLPYAATLVGA  245 (541)
T ss_dssp             --CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCEEEECSCTTSHHHHTHHHHHHHHTC
T ss_pred             --CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCEEEEeccchhhhHHHHHHHHHhcCc
Confidence              1133457899999999999999999999999998776653  2344 5788999999999999999877888999999


Q ss_pred             eEEEecC-CCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecc
Q 015325          261 TAVVMQR-FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA  339 (409)
Q Consensus       261 ~~v~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  339 (409)
                      ++++.+. +++..+++.++++++|++.++|+++..|.+.......++++||.+++||+++++++.++| +.+ ++++++.
T Consensus       246 ~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~-g~~~~~~  323 (541)
T 1v25_A          246 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERM-GVEVRQG  323 (541)
T ss_dssp             EEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHT-TCEEEEE
T ss_pred             eEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHh-CCceeec
Confidence            9999864 799999999999999999999999999987654444567899999999999999999999 667 9999999


Q ss_pred             cCcccccceecccCCCCC---------CCCCCccccccCCceEEEecCCCCCCCCC--CCcceEEEecCccccccCCCCC
Q 015325          340 YGLTESTAGVFRTVGPDE---------CRRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       340 yG~tE~~~~~~~~~~~~~---------~~~~~s~G~p~~~~~v~i~d~~~g~~~~~--g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ||+||++..++.......         ....+++|+|+++++++|+| ++|++++.  ++.|||+|+||+++.||||+|.
T Consensus       324 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~  402 (541)
T 1v25_A          324 YGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEE  402 (541)
T ss_dssp             EECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHH
T ss_pred             ccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChh
Confidence            999999876665322110         02347899999999999999 88999985  3689999999999999999863

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=1.9e-56  Score=448.86  Aligned_cols=363  Identities=18%  Similarity=0.204  Sum_probs=298.4

Q ss_pred             CCCCHH-HHHhhccCCCCCCCCCCcEEEeCC----CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHH
Q 015325           36 APISAV-DYVSSLRATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPI  110 (409)
Q Consensus        36 ~~~~~~-~~l~~~~~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~  110 (409)
                      ..+|+. ++|.++++++    ||++|+++..    .++++||+||.++++++|+.|++ +|+++||+|+|+++|++++++
T Consensus        73 ~~~n~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~-~Gv~~Gd~V~i~~~~~~e~vv  147 (652)
T 1pg4_A           73 GTLNLAANCLDRHLQEN----GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAAV  147 (652)
T ss_dssp             CEECHHHHHTGGGHHHH----TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHHH
T ss_pred             CChhHHHHHHHHHhccC----CCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHH
Confidence            335654 5565666777    9999999731    24789999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHH---------HH----hhc---CC-eEEEeCCC----
Q 015325          111 LYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KL----AKL---KH-RTILIDSP----  169 (409)
Q Consensus       111 ~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~----~~~---~~-~~~~~~~~----  169 (409)
                      ++|||+++|++++|+++.++.+++.+++++++++++|+++....         .+    ...   .. .++.++..    
T Consensus       148 a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~  227 (652)
T 1pg4_A          148 AMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI  227 (652)
T ss_dssp             HHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC
T ss_pred             HHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc
Confidence            99999999999999999999999999999999999999875321         11    111   11 34444321    


Q ss_pred             --------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHH-HhhccCCCCCCCCEEEEe
Q 015325          170 --------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVA-SSFASSPKRVSPAVMLFT  240 (409)
Q Consensus       170 --------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~-~~~~~~~~~~~~d~~l~~  240 (409)
                              .|+++......  ........++++++|+|||||||.||||+++|++++..+. .....+ ++.++|++++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~~d~~l~~  304 (652)
T 1pg4_A          228 DWQEGRDLWWRDLIEKASP--EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-DYHPGDIYWCT  304 (652)
T ss_dssp             CCCBTTEEEHHHHHTTSCS--CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-TCCTTCEEEEC
T ss_pred             cccCCCceeHHHHHhhcCC--CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-CCCCCCEEEEc
Confidence                    12333322111  1222334578999999999999999999999999876654 334445 68899999999


Q ss_pred             CchhhHHhH-HHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceee
Q 015325          241 MPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVA  313 (409)
Q Consensus       241 ~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~  313 (409)
                      .|++|.++. +.++.++..|+++++.+.    +++..+++.|+++++|++.++|+++..|.+...  ....++++||.++
T Consensus       305 ~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~  384 (652)
T 1pg4_A          305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILG  384 (652)
T ss_dssp             SCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEE
T ss_pred             cCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEE
Confidence            999999998 778999999999999875    589999999999999999999999999998754  3455789999999


Q ss_pred             ecCCCCCHHHHHHHHHhCC--CCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcce
Q 015325          314 CGAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGE  391 (409)
Q Consensus       314 ~~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Ge  391 (409)
                      +||++++++++++|.+.++  ++++++.||+||+++.++.........+.+++|+|++|++++|+| ++|++++.|+.||
T Consensus       385 ~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~g~~GE  463 (652)
T 1pg4_A          385 SVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEGN  463 (652)
T ss_dssp             EESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEEE
T ss_pred             EecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCCCceEE
Confidence            9999999999999999983  289999999999987665432222345678999999999999999 8899999999999


Q ss_pred             EEEec--CccccccCCCC
Q 015325          392 LSIRG--PTIMKGIFLPH  407 (409)
Q Consensus       392 i~v~g--~~v~~gY~~~~  407 (409)
                      |+|+|  |+++.||||++
T Consensus       464 l~i~g~~p~~~~gY~~~~  481 (652)
T 1pg4_A          464 LVITDSWPGQARTLFGDH  481 (652)
T ss_dssp             EEECSCCTTCCCEETTCH
T ss_pred             EEEccCCCchhhhhcCCH
Confidence            99999  79999999986

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=1.2e-56  Score=444.49  Aligned_cols=351  Identities=18%  Similarity=0.173  Sum_probs=297.6

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      ..++.++|.++++++    ||++|+++.  ++++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+
T Consensus        74 ~~~l~~~l~~~a~~~----pd~~A~~~~--~~~~Ty~el~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~  146 (570)
T 4gr5_A           74 GACVHELFEAQAARA----PDAVALLHE--ADELTYGALNERANRLAHRLVG-LGVAPGTLVGVHLERGFDMVVALLAVL  146 (570)
T ss_dssp             SCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHC----CCCeEEECC--CCcEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHH
Confidence            368999999999999    999999998  8899999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA  196 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (409)
                      ++|++++|+++.++.+++.+++++++++++|++......+..  ...+.......    ...  ..........++++++
T Consensus       147 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~----~~~--~~~~~~~~~~~~d~a~  218 (570)
T 4gr5_A          147 KAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTG--TTTLYVEDEAA----SDA--PAGNLATGVGPEDVAC  218 (570)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCS--SEEEECCC-------------CCCCCCCCCTTSEEE
T ss_pred             HHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccC--Ccceeeecccc----ccc--cccccCCCCCCCCeEE
Confidence            999999999999999999999999999999999865443321  11222111100    000  0011223456799999


Q ss_pred             EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec--CCCHHHHH
Q 015325          197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ--RFDLKMML  274 (409)
Q Consensus       197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~--~~~~~~~~  274 (409)
                      |+|||||||.||||++||+++...... ...+ ++.++|++++..|++|..+.+.++.++..|+++++.+  .+++..++
T Consensus       219 i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~  296 (570)
T 4gr5_A          219 VMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIG  296 (570)
T ss_dssp             EECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHH
T ss_pred             EEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHH
Confidence            999999999999999999999766544 3344 6889999999999999777778899999999999986  47899999


Q ss_pred             HHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccCC
Q 015325          275 KAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG  354 (409)
Q Consensus       275 ~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~  354 (409)
                      +.|+++++|++.++|+++..|.+...   ..+++||.+++||++++.++.+++.+.++++++++.||+||+++..+....
T Consensus       297 ~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~  373 (570)
T 4gr5_A          297 ELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAV  373 (570)
T ss_dssp             HHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEEC
T ss_pred             HHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeee
Confidence            99999999999999999999987642   347899999999999999999999999999999999999999876554221


Q ss_pred             C--CCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          355 P--DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       355 ~--~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .  .......++|+|+++++++|+| ++|+++++|+.|||+|+|++++.|||++|.
T Consensus       374 ~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~  428 (570)
T 4gr5_A          374 VAGDLSGTALPIGVPLAGKRAYVLD-DDLKPAANGALGELYVAGAGLAHGYVSRPA  428 (570)
T ss_dssp             CGGGTTSSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHH
T ss_pred             cccccCCCccccceeeCCCEEEEEC-CCCCCCCCCCcEEEEEeecccchhcCCCch
Confidence            1  1223456799999999999999 889999999999999999999999999863

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=3.8e-56  Score=434.73  Aligned_cols=353  Identities=22%  Similarity=0.265  Sum_probs=296.5

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      +|+.++|.+.++++    ||++|+++...++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||++
T Consensus         2 ~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~~~~~~~~~~lA~~~   76 (504)
T 1t5h_X            2 QTVNEMLRRAATRA----PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHR   76 (504)
T ss_dssp             CCHHHHHHHHHHHC----TTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHhC----CCceEEEEcCCCceeEHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            57899999999999    999999987556899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEE--cCchHHHH-hhc-CCeEEEeCCCcchhhhcccC---CcccccccccC
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFA--TSSVVHKL-AKL-KHRTILIDSPEFDSMTMSWN---SKHELDRAKVC  190 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  190 (409)
                      +|++++|+++.++.+++.+++++++++++++  +.+....+ ... ..+++.     ++++.....   ...........
T Consensus        77 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  151 (504)
T 1t5h_X           77 LGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIF-----LGDLVRDGEPYSYGPPIEDPQRE  151 (504)
T ss_dssp             HTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCCCCEEEE-----GGGTEETTEECCCSCCCCCCCCC
T ss_pred             hCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccccceeEE-----ecchhhcCcccccCCccCCCCCC
Confidence            9999999999999999999999999999999  76655544 322 223221     233322210   00011113456


Q ss_pred             CCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCC--CCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecC
Q 015325          191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKR--VSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR  267 (409)
Q Consensus       191 ~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~--~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~  267 (409)
                      ++++++|+|||||||.||||++||+++...+......+ ++  .+.|++++.+|++|.+++ ..++.++..|+++++.+.
T Consensus       152 ~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~  230 (504)
T 1t5h_X          152 PAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE  230 (504)
T ss_dssp             TTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS
T ss_pred             CCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC
Confidence            78999999999999999999999999998888777766 56  788999999999999998 678999999999999999


Q ss_pred             CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccc
Q 015325          268 FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES  345 (409)
Q Consensus       268 ~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~  345 (409)
                      +++..+++.|+++++|++.++|+++..|.+...  ....++++||.+++||+++++++.++|++.+ +..+++.||+||+
T Consensus       231 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~YG~TE~  309 (504)
T 1t5h_X          231 FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEA  309 (504)
T ss_dssp             CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-CSEEEEEEEETTT
T ss_pred             CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-Ccceeeeeccccc
Confidence            999999999999999999999999999987642  2445689999999999999999999999999 7899999999999


Q ss_pred             cceecccCCCCCCCCCCccccccCCceEEEecCCCC---CCCCCCCcceEEEe-cCccccccCCCCC
Q 015325          346 TAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETG---DSLPPGKEGELSIR-GPTIMKGIFLPHF  408 (409)
Q Consensus       346 ~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g---~~~~~g~~Gei~v~-g~~v~~gY~~~~~  408 (409)
                      +. +.. ..   ....+++|.|+++++++|+| +++   +++++|+.|||+|+ |++++.||||+|+
T Consensus       310 ~~-~~~-~~---~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~  370 (504)
T 1t5h_X          310 MN-SLY-MR---QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ  370 (504)
T ss_dssp             EE-EEE-EE---SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHH
T ss_pred             cc-ccc-cc---CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCch
Confidence            32 222 11   34568899999999999999 666   99999999999999 9999999999863

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.8e-56  Score=439.06  Aligned_cols=356  Identities=19%  Similarity=0.265  Sum_probs=301.3

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .|+.+.|.+.++++    |+++|+++.  ++++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||++
T Consensus         4 ~~l~~~l~~~a~~~----p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~-~g~~~gd~V~i~~~n~~~~~~~~lA~~~   76 (521)
T 3l8c_A            4 KDMIDSIEQFAQTQ----ADFPVYDCL--GERRTYGQLKRDSDSIAAFIDS-LALLAKSPVLVFGAQTYDMLATFVALTK   76 (521)
T ss_dssp             CCHHHHHHHHHHHS----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TCCCTTCCEEEEECSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC----CCCcceecC--CCeecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            68999999999999    999999998  8899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAAI  197 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i  197 (409)
                      +|++++|+++.++.+++.+++++++++++|++++....+.  ....+...  .+.......  ..........++++++|
T Consensus        77 ~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~--~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~d~a~i  150 (521)
T 3l8c_A           77 SGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE--GISLVSLS--EIESAKLAE--MPYERTHSVKGDDNYYI  150 (521)
T ss_dssp             TTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT--TSEEEEHH--HHHHHHHHT--CCCCCSSCCCTTSEEEE
T ss_pred             hCCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccc--cCcccchh--hhhhccccc--CCcccCCCCCCCCcEEE
Confidence            9999999999999999999999999999999876433221  11222111  111111011  00112234567899999


Q ss_pred             EcCCCCCCCcchhhhccHHHHHHHHHhhcc--CCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCC---CHHH
Q 015325          198 MYSSGTTGRVKGVMLTHRNLTAAVASSFAS--SPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRF---DLKM  272 (409)
Q Consensus       198 ~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~--~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~---~~~~  272 (409)
                      +|||||||.||||++||+++...+......  + .....+++++..|++|..++..++.++..|+++++.+..   ++..
T Consensus       151 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~  229 (521)
T 3l8c_A          151 IFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQ  229 (521)
T ss_dssp             EECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHH
T ss_pred             EEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHH
Confidence            999999999999999999999877766554  4 578899999999999999988889999999999998764   8999


Q ss_pred             HHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325          273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT  352 (409)
Q Consensus       273 ~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~  352 (409)
                      +++.+.++++|++.++|+++..+..........+++||.+++||+++++++.+++.+.|+++++++.||+||+++.++..
T Consensus       230 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~  309 (521)
T 3l8c_A          230 LFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAI  309 (521)
T ss_dssp             HHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEE
T ss_pred             HHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhcee
Confidence            99999999999999999999999988766667789999999999999999999999999999999999999998765542


Q ss_pred             CCCC---CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          353 VGPD---ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       353 ~~~~---~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ....   ......++|+|+++++++|+| ++|+++++|+.|||+|+||+++.||||+|.
T Consensus       310 ~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~  367 (521)
T 3l8c_A          310 EITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELSSGEQGEIIVTGPAVSKGYLNNPE  367 (521)
T ss_dssp             EECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCCTTCCEEEEEESTTSCSCBTTCHH
T ss_pred             ecccccccCCCccccccccCCCEEEEEC-CCcCCCCCCCceEEEecccccChhhcCCch
Confidence            2111   123457899999999999999 889999999999999999999999999863

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=6e-56  Score=438.10  Aligned_cols=347  Identities=18%  Similarity=0.212  Sum_probs=293.0

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.++|.+.++++    |+++|+++.  ++++||+||.++++++|+.|++ .|+++||+|+++++|+++++++++||++
T Consensus        39 ~~l~~~l~~~a~~~----p~~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~lA~~~  111 (563)
T 1amu_A           39 KTIHQLFEEQVSKR----PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVLK  111 (563)
T ss_dssp             CCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHC----CCCeEEEeC--CceecHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence            68999999999999    999999987  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC--CeEEEeCCCcchhhhcccCCcccccccccCCCCEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA  195 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  195 (409)
                      +|++++|+++.++.+++.+++++++++++|++.+....+....  ..+..++...+..   ...   ........+++++
T Consensus       112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~d~a  185 (563)
T 1amu_A          112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKI---REG---TNLHVPSKSTDLA  185 (563)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTT---SCC---SCCCCCCCTTSEE
T ss_pred             hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccccCceeeecchhhcc---ccC---ccCCCCCCCCCeE
Confidence            9999999999999999999999999999999987766554332  2233332211110   000   1112234578999


Q ss_pred             EEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHH
Q 015325          196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM  272 (409)
Q Consensus       196 ~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~  272 (409)
                      +|+|||||||.||||++||+++.+.+......+ ++.+.|++++..|++|..+++.++.++..|+++++.+.   +++..
T Consensus       186 ~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~  264 (563)
T 1amu_A          186 YVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVK  264 (563)
T ss_dssp             EEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHH
T ss_pred             EEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHH
Confidence            999999999999999999999998888777777 68899999999999999998888999999999999875   68999


Q ss_pred             HHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325          273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT  352 (409)
Q Consensus       273 ~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~  352 (409)
                      +++.++++++|++.++|+++..+...      .+++||.+++||+++++++.++|++.   +++++.||+||++..++..
T Consensus       265 ~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~  335 (563)
T 1amu_A          265 FEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTYINAYGPTETTICATTW  335 (563)
T ss_dssp             HHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEE
T ss_pred             HHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeEEEEECcCHHhHhheee
Confidence            99999999999999999999877543      35789999999999999999999764   6899999999998765543


Q ss_pred             CCC-CCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          353 VGP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       353 ~~~-~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ... .......++|+|+++++++|+| ++|++++.|+.|||+|+|++++.|||++|+
T Consensus       336 ~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe  391 (563)
T 1amu_A          336 VATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRPE  391 (563)
T ss_dssp             ECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCHH
T ss_pred             ecccccCCCCCcccceeCCCEEEEEC-CCcCCCCCCCcEEEEEechhhChhhCCCch
Confidence            222 2223567899999999999999 899999999999999999999999999863

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.6e-55  Score=435.69  Aligned_cols=356  Identities=18%  Similarity=0.236  Sum_probs=296.7

Q ss_pred             CCH-HHHHhhccCC-----CCCCCCCCcEEEeCC---CCceeeHHHHHHHHHHHHHHhHhcc-CCCCCCEEEEEcCCCCc
Q 015325           38 ISA-VDYVSSLRAT-----LPWRDDDTVALINSV---TGLRVSFSEFTRRTNSLASYLQNVT-RLSKNDTAFVLSTNSIE  107 (409)
Q Consensus        38 ~~~-~~~l~~~~~~-----~~~~~p~~~a~~~~~---~~~~~Ty~el~~~~~~la~~L~~~~-gv~~g~~V~i~~~~~~~  107 (409)
                      +|+ .++|.+.+++     +    |+++|+++.+   .++++||+||.++++++|++|++ . |+++||+|+|+++|+++
T Consensus        37 ~~~~~~~l~~~a~~~~a~~~----p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~-~~Gv~~gd~V~i~~~n~~e  111 (570)
T 3c5e_A           37 FNFASDVLDHWADMEKAGKR----PPSPALWWVNGKGKELMWNFRELSENSQQAANVLSG-ACGLQRGDRVAVVLPRVPE  111 (570)
T ss_dssp             CCHHHHTHHHHHHHHHTTSS----CCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHT-TTCCCTTCEEEEECCSCHH
T ss_pred             ccHHHHHHHHHHhhccccCC----CCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHH-ccCCCCCCEEEEEcCCCHH
Confidence            555 5777777776     7    9999999732   13789999999999999999998 8 99999999999999999


Q ss_pred             hHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CC-eEEEeCCC------cchhhh
Q 015325          108 IPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KH-RTILIDSP------EFDSMT  175 (409)
Q Consensus       108 ~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~-~~~~~~~~------~~~~~~  175 (409)
                      ++++++||+++|++++|+++.++.+++.+++++++++++|++.+....+...     .. .++.++..      .+.++.
T Consensus       112 ~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (570)
T 3c5e_A          112 WWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLL  191 (570)
T ss_dssp             HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHH
T ss_pred             HHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHh
Confidence            9999999999999999999999999999999999999999998776555321     12 23333321      133332


Q ss_pred             cccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHH--HHHHhhccCCCCCCCCEEEEeCchhhHHhHH-HH
Q 015325          176 MSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA--AVASSFASSPKRVSPAVMLFTMPYFHIYGLF-FC  252 (409)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~--~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~-~~  252 (409)
                      .....  ........++++++|+|||||||.||||++||+ ++.  ..... ..+ ++.+.|++++..|++|.+++. .+
T Consensus       192 ~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~~~~~d~~~~~~p~~~~~~~~~~~  266 (570)
T 3c5e_A          192 NEAST--THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-GLQASDIMWTISDTGWILNILCSL  266 (570)
T ss_dssp             HHSCS--CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-SCCTTCEEEECCCTTSHHHHHHTT
T ss_pred             hcccc--cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-CCCCCceEEEcCchHHHHHHHHHH
Confidence            22211  112234567899999999999999999999999 544  33333 555 688999999999999999984 78


Q ss_pred             HHHHHhCCeEEEec--CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHh
Q 015325          253 FRAAALMETAVVMQ--RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASK  330 (409)
Q Consensus       253 ~~~l~~G~~~v~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~  330 (409)
                      +.++..|+++++.+  .+++..+++.|+++++|++.++|+++..|.+.. ....++++||.+++||+++++++.++|++.
T Consensus       267 ~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~  345 (570)
T 3c5e_A          267 MEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQ  345 (570)
T ss_dssp             HHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred             HHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHH
Confidence            99999999999986  689999999999999999999999999999863 334567899999999999999999999998


Q ss_pred             CCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEe-----cCccccccCC
Q 015325          331 FPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIR-----GPTIMKGIFL  405 (409)
Q Consensus       331 ~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~-----g~~v~~gY~~  405 (409)
                      + ++++++.||+||++..++.  ........+++|+|+++++++|+| ++|+++++|+.|||+|+     |++++.|||+
T Consensus       346 ~-g~~i~~~YG~TE~~~~~~~--~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~  421 (570)
T 3c5e_A          346 T-GLDIRESYGQTETGLTCMV--SKTMKIKPGYMGTAASCYDVQIID-DKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVD  421 (570)
T ss_dssp             H-SCCCEEEEEETTTEEEEEC--CTTSCCCTTCCCEECTTCCEEEEC-TTSCBCCTTCCEEEEEECSSBCCTTCCCEETT
T ss_pred             h-CCchhhccchhhcccceec--CcccccCCCcccccCCCceEEEEC-CCCCCCCCCCCCeeEEeccCCCCchhhccccC
Confidence            8 8999999999999865544  222345678999999999999999 78999999999999999     9999999999


Q ss_pred             CCC
Q 015325          406 PHF  408 (409)
Q Consensus       406 ~~~  408 (409)
                      +|.
T Consensus       422 ~~~  424 (570)
T 3c5e_A          422 NPD  424 (570)
T ss_dssp             CHH
T ss_pred             Chh
Confidence            863

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=1.2e-55  Score=443.29  Aligned_cols=370  Identities=17%  Similarity=0.228  Sum_probs=299.9

Q ss_pred             CCCCCCCCCCCHHH-HHhhccCCCCCCCCCCcEEEeC----CCCceeeHHHHHHHHHHHHHHhH-hccCCCCCCEEEEEc
Q 015325           29 IDLPPEDAPISAVD-YVSSLRATLPWRDDDTVALINS----VTGLRVSFSEFTRRTNSLASYLQ-NVTRLSKNDTAFVLS  102 (409)
Q Consensus        29 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~p~~~a~~~~----~~~~~~Ty~el~~~~~~la~~L~-~~~gv~~g~~V~i~~  102 (409)
                      ..|.+ +..+|... .|.++++++    |+++|+++.    ..++++||+||.++++++|+.|+ + +|+++||+|+|++
T Consensus        73 ~~wf~-~~~~n~~~~~l~~~a~~~----pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~-~Gv~~Gd~V~i~~  146 (663)
T 1ry2_A           73 NAWFL-NGQLNACYNCVDRHALKT----PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYS-MGVRKGDTVAVYM  146 (663)
T ss_dssp             CCBST-TCEECHHHHHTHHHHTTC----TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHT-SCCCTTCEEEECC
T ss_pred             CCcCC-CCCccHHHHHHHHHhccC----CCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEc
Confidence            34544 33466654 555666777    999999973    13578999999999999999999 8 9999999999999


Q ss_pred             CCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHH---------HHhh----c-CC-eEEEeC
Q 015325          103 TNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KLAK----L-KH-RTILID  167 (409)
Q Consensus       103 ~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~----~-~~-~~~~~~  167 (409)
                      +|++++++++|||+++|++++|+++.++.+++.+++++++++++|+++....         .+.+    . .. .++.++
T Consensus       147 ~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~  226 (663)
T 1ry2_A          147 PMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYR  226 (663)
T ss_dssp             CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEe
Confidence            9999999999999999999999999999999999999999999999875421         1111    1 11 233333


Q ss_pred             CC-------------cchhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHH-hhccCCCCCC
Q 015325          168 SP-------------EFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPKRVS  233 (409)
Q Consensus       168 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~-~~~~~~~~~~  233 (409)
                      ..             .|.++......  ........++++++|+|||||||.||||+++|++++..... ....+ .+.+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-~~~~  303 (663)
T 1ry2_A          227 KTNNPSVAFHAPRDLDWATEKKKYKT--YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-DTHQ  303 (663)
T ss_dssp             SSCCSSCCCCSSSEEEHHHHHTTSCS--CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-CCCS
T ss_pred             cCCCCccccCCCccccHHHHHhhcCC--CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-CCCC
Confidence            21             12222222111  12223446789999999999999999999999998766543 34445 6889


Q ss_pred             CCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCC
Q 015325          234 PAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDL  306 (409)
Q Consensus       234 ~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l  306 (409)
                      .|++++..|++|..+. +.++.++..|+++++.+.    +++..+++.|+++++|++.++|+++..|.+...  ....++
T Consensus       304 ~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l  383 (663)
T 1ry2_A          304 EDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSL  383 (663)
T ss_dssp             SCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCC
T ss_pred             CcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCc
Confidence            9999999999999998 778999999999999864    589999999999999999999999999998754  345678


Q ss_pred             CCcceeeecCCCCCHHHHHHHHHhCC--CCceecccCcccccceecccCC-CCCCCCCCccccccCCceEEEecCCCCCC
Q 015325          307 SSLETVACGAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVG-PDECRRWGSTGRLSAGLEAKIVDPETGDS  383 (409)
Q Consensus       307 ~~Lr~v~~~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~-~~~~~~~~s~G~p~~~~~v~i~d~~~g~~  383 (409)
                      ++||.+++|||++++++++++.+.++  ++++++.||+||+++.++.... .....+++++|+|++|++++|+|+++|++
T Consensus       384 ~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~  463 (663)
T 1ry2_A          384 KSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEE  463 (663)
T ss_dssp             TTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTC
T ss_pred             CceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCc
Confidence            99999999999999999999999983  3899999999999876554222 12345678999999999999999549999


Q ss_pred             CCC-CCcceEEEec--CccccccCCCC
Q 015325          384 LPP-GKEGELSIRG--PTIMKGIFLPH  407 (409)
Q Consensus       384 ~~~-g~~Gei~v~g--~~v~~gY~~~~  407 (409)
                      ++. |+.|||+|+|  |+++.|||+++
T Consensus       464 v~~~g~~Gel~i~g~~p~~~~gy~~~~  490 (663)
T 1ry2_A          464 LNTSHAEGVLAVKAAWPSFARTIWKNH  490 (663)
T ss_dssp             EECSSCEEEEEESSCCTTSCCEETTCH
T ss_pred             CCCCCcceEEEEecCCCchhcccccCh
Confidence            998 9999999999  58999999986

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=5e-55  Score=436.58  Aligned_cols=357  Identities=21%  Similarity=0.279  Sum_probs=299.4

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      ..++.++|.++++      ||++|++++  ++++||+||.++++++|++|++ .|+++||+|+++++|+++++++++||+
T Consensus        26 ~~~l~~~~~~~a~------pd~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~gd~V~l~~~~s~~~vva~lA~l   96 (617)
T 3rg2_A           26 DLPLTDILTRHAA------SDSIAVIDG--ERQLSYRELNQAADNLACSLRR-QGIKPGETALVQLGNVAELYITFFALL   96 (617)
T ss_dssp             CCCTTHHHHTTTT------CCSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred             cCCHHHHHHHhhC------CCCeEEecC--CceEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEECCCcHHHHHHHHHHH
Confidence            3889999998876      799999998  8899999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchH--------HHHh-h-cCCeEEE-eCCCc---chhhhcccCCcc
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVV--------HKLA-K-LKHRTIL-IDSPE---FDSMTMSWNSKH  182 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~--------~~~~-~-~~~~~~~-~~~~~---~~~~~~~~~~~~  182 (409)
                      ++|++++|+++..+.+++.++++++++++++++....        ..+. . .....+. .+...   +.+.......  
T Consensus        97 ~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  174 (617)
T 3rg2_A           97 KLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAINHPAE--  174 (617)
T ss_dssp             HHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCSTTBHHHHHHSCCS--
T ss_pred             hcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccccchhhhhccccc--
Confidence            9999999999999999999999999999999987543        1111 1 1222222 22211   2222221111  


Q ss_pred             cccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHH--HHHHHHHhCC
Q 015325          183 ELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLF--FCFRAAALME  260 (409)
Q Consensus       183 ~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~--~~~~~l~~G~  260 (409)
                      ........++++++|+|||||||.||||+++|+++.+.+......+ ++.+.+++++..|++|.+++.  .++.++..|+
T Consensus       175 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~  253 (617)
T 3rg2_A          175 DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGG  253 (617)
T ss_dssp             SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTC
T ss_pred             ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-CCCCcceEEEeccchhhhhhhHHHHHHHHHcCC
Confidence            1222345678999999999999999999999999999998888877 689999999999999998883  6899999999


Q ss_pred             eEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCC--CCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325          261 TAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ  338 (409)
Q Consensus       261 ~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  338 (409)
                      ++++.+.+++..++..++++++|++.++|+++..+++....  ....+++||.+++||+++++++.++|.+.+ ++++++
T Consensus       254 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~  332 (617)
T 3rg2_A          254 TVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQ  332 (617)
T ss_dssp             EEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEE
Confidence            99999989999999999999999999999999998875332  233688999999999999999999999999 899999


Q ss_pred             ccCcccccceecccCCCCCCCCCCcccccc-CCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          339 AYGLTESTAGVFRTVGPDECRRWGSTGRLS-AGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~-~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .||+||++..++.. .........++|+|+ ++++++|+| ++|++++.|+.|||+|+|+++++||||+|+
T Consensus       333 ~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~  401 (617)
T 3rg2_A          333 VFGMAEGLVNYTRL-DDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPLPQGEVGRLMTRGPYTFRGYYKSPQ  401 (617)
T ss_dssp             EEEETTEEEEECCT-TSCHHHHHHCCCEESCTTCEEEEEC-TTSCBCCTTCCEEEEEECSSSCSCCTTCHH
T ss_pred             EeccCcceeecccC-CCcccccccCCCccCCCCceEEEEC-CCCCCCCCCCceEEEecCccccchhcCChh
Confidence            99999987554431 111122335789997 788999999 899999999999999999999999999863

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=1.8e-55  Score=438.67  Aligned_cols=359  Identities=22%  Similarity=0.262  Sum_probs=299.6

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCC--CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSV--TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS  114 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~--~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A  114 (409)
                      ..|+.+.|.++++++    |+++|+++.+  .++++||+||.++++++|+.|++ .|+++||+|+++++|++++++++||
T Consensus        10 ~~tl~~~l~~~a~~~----p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~gv~~gd~V~i~~~~~~~~~~~~lA   84 (590)
T 3kxw_A           10 CQSLVDVVRLRALHS----PNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQA-EGAKPGDRVLLLFAPGLPLIQAFLG   84 (590)
T ss_dssp             CSSHHHHHHHHHHHC----TTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred             cccHHHHHHHHHHhC----CCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHH-cCCCCCCEEEEEcCCchhHHHHHHH
Confidence            489999999999999    9999998632  24799999999999999999999 9999999999999999999999999


Q ss_pred             HHHhCCeEccCCCCC---CHHHHHHHHhhcCCeEEEEcCchHHHHhhcCC-------eEEEeCCCcchhhhcccCCcccc
Q 015325          115 LLSLGVIISPANPVN---TESEISRQIQLSNPVIAFATSSVVHKLAKLKH-------RTILIDSPEFDSMTMSWNSKHEL  184 (409)
Q Consensus       115 ~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                      |+++|++++|+++..   +.+++.++++.+++++++++.+....+.....       .+..+.   .+.+.....  ...
T Consensus        85 ~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~  159 (590)
T 3kxw_A           85 CLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA---LESIELNRS--SSW  159 (590)
T ss_dssp             HHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE---GGGCCGGGG--GGC
T ss_pred             HHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee---chhcccccc--ccC
Confidence            999999999999988   45789999999999999999877665543210       011111   111111111  122


Q ss_pred             cccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHH-HHHHHHhCCeEE
Q 015325          185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFF-CFRAAALMETAV  263 (409)
Q Consensus       185 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~~~v  263 (409)
                      ......++++++|+|||||||.||||++||+++...+......+ ++.+.|++++.+|++|.+|+.. ++.++..|++++
T Consensus       160 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v  238 (590)
T 3kxw_A          160 QPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAI  238 (590)
T ss_dssp             CCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEE
T ss_pred             CCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEE
Confidence            23355678999999999999999999999999999999888888 7899999999999999999954 899999999999


Q ss_pred             EecCC----CHHHHHHHHHHhcceeEeechHHHHHHHhCC---CCCCCCCCCcceeeecCCCCCHHHHHHHHHhCC----
Q 015325          264 VMQRF----DLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG---STDGYDLSSLETVACGAAPLGKDTIMAFASKFP----  332 (409)
Q Consensus       264 ~~~~~----~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~---~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~----  332 (409)
                      +.+.+    ++..+++.|+++++|++.++|+++..+.+..   .....++++||.+++||+++++++.++|.+.|+    
T Consensus       239 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~  318 (590)
T 3kxw_A          239 MMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGF  318 (590)
T ss_dssp             ECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTC
T ss_pred             EeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCC
Confidence            99765    7899999999999999999999999887753   234567899999999999999999999999873    


Q ss_pred             -CCceecccCcccccceecccCC-------------------------CCCCCCCCccccccCCceEEEecCCCCCCCCC
Q 015325          333 -KVVLVQAYGLTESTAGVFRTVG-------------------------PDECRRWGSTGRLSAGLEAKIVDPETGDSLPP  386 (409)
Q Consensus       333 -~~~i~~~yG~tE~~~~~~~~~~-------------------------~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~  386 (409)
                       +.++++.||+||+++.++....                         ........++|+|+++  ++|+|+++++++++
T Consensus       319 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~~~~~~~~  396 (590)
T 3kxw_A          319 RKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPDTLIPCDF  396 (590)
T ss_dssp             CGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTTTCCBCCT
T ss_pred             CccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCCCCcCCCC
Confidence             4589999999999887664221                         1112234678999998  88999777999999


Q ss_pred             CCcceEEEecCccccccCCCCC
Q 015325          387 GKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       387 g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      |+.|||+|+||+++.||||+|+
T Consensus       397 g~~GEl~v~g~~v~~GY~~~p~  418 (590)
T 3kxw_A          397 DQVGEIWVQSNSVAKGYWNQPE  418 (590)
T ss_dssp             TBCEEEEEESTTSCCCBTTCHH
T ss_pred             CCEEEEEEeCCcccccccCChh
Confidence            9999999999999999999863

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=9.8e-55  Score=424.73  Aligned_cols=348  Identities=21%  Similarity=0.274  Sum_probs=287.0

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      ||+.++|.++++++    ||++|+++.  ++++||+||.++++++|+.|++ .   +||+|+++++|+++++++++||++
T Consensus         1 mtl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~eL~~~~~~lA~~L~~-~---~gd~V~i~~~n~~e~~~~~lA~~~   70 (501)
T 3ipl_A            1 MSLDFWLYKQAQQN----GHHIAITDG--QESYTYQNLYCEASLLAKRLKA-Y---QQSRVGLYIDNSIQSIILIHACWL   70 (501)
T ss_dssp             --CCCHHHHHHHHH----TTSEEEECS--SCEEEHHHHHHHHHHHHHHHHT-T---CCSEEEEECCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhc----CCceEEEeC--CcEEEHHHHHHHHHHHHHHHHH-c---CCCEEEEEcCCCHHHHHHHHHHHH
Confidence            57788999999999    999999998  7899999999999999999998 5   899999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc----CCeEEEeC----C-------Ccc----hhhhccc
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL----KHRTILID----S-------PEF----DSMTMSW  178 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~----~~~~~~~~----~-------~~~----~~~~~~~  178 (409)
                      +|++++|+++.++.+++.+++++++++++|++.+........    ........    .       ..+    ...... 
T Consensus        71 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  149 (501)
T 3ipl_A           71 ANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPK-  149 (501)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC---------------------------------
T ss_pred             cCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccccceeeeeecccccccccccccccccchhhcccc-
Confidence            999999999999999999999999999999987644322110    00000000    0       000    000000 


Q ss_pred             CCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHh
Q 015325          179 NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAAL  258 (409)
Q Consensus       179 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~  258 (409)
                      ............++++++|+|||||||.||||++||+++...+......+ ++.++|++++..|++|.+++..++.++..
T Consensus       150 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~l~~  228 (501)
T 3ipl_A          150 ESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLSVLPIYHISGLSVLLRAVIE  228 (501)
T ss_dssp             CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred             CCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEEeCcHHHHHHHHHHHHHHHc
Confidence            00001112345678999999999999999999999999999998888888 78999999999999999999779999999


Q ss_pred             CCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceec
Q 015325          259 METAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQ  338 (409)
Q Consensus       259 G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~  338 (409)
                      |+++++.+.+++..+++.|+++++|++.++|+++..|.+......   .+||.+++||+++++++.+++.+ + ++++++
T Consensus       229 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~-~~~~~~  303 (501)
T 3ipl_A          229 GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-Y-NLPIYN  303 (501)
T ss_dssp             TCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-T-TCCEEE
T ss_pred             CceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-h-CCCEec
Confidence            999999999999999999999999999999999999998764433   27999999999999999999988 4 899999


Q ss_pred             ccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          339 AYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       339 ~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      .||+||+++.++............++|+|+++++++|+|++      +|+.|||+|+|++++.|||+++.
T Consensus       304 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~------~~~~GEl~v~g~~~~~gY~~~~~  367 (501)
T 3ipl_A          304 SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN------KEGHGELMIKGANVMNGYLYPTD  367 (501)
T ss_dssp             EEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC------SSCCEEEEEESTTSCSCCSBSTT
T ss_pred             cccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC------CCCccEEEEeccchhhhhCcChh
Confidence            99999998755442222223456789999999999999943      56789999999999999999875

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.6e-54  Score=428.89  Aligned_cols=358  Identities=18%  Similarity=0.157  Sum_probs=291.7

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCC--------CceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCch
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVT--------GLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEI  108 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~--------~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~  108 (409)
                      .+|+.++|.+.++++    ||++|+++.+.        .+++||+||.++++++|+.|++ .|+ +||+|+++++|++++
T Consensus        19 ~~tl~~~l~~~a~~~----p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~-~g~-~gd~V~i~~~n~~~~   92 (562)
T 3ite_A           19 TVPPSHYIETWAKTH----PEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIH-ASL-HGRAIAVSLDRSLIA   92 (562)
T ss_dssp             CCCTTHHHHHHHHHC----TTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHH-TTC-SSCEEEEECCSCHHH
T ss_pred             cCCHHHHHHHHHHHC----CCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHh-cCC-CCCEEEEEeCCCHHH
Confidence            389999999999999    99999987521        2789999999999999999999 899 799999999999999


Q ss_pred             HHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-CCeEEEeCCCcchhhhcccCCccccccc
Q 015325          109 PILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-KHRTILIDSPEFDSMTMSWNSKHELDRA  187 (409)
Q Consensus       109 ~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (409)
                      ++++|||+++|++++|+++.++.+++.+++++++++++|++++........ ...++......+.+.......  .....
T Consensus        93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  170 (562)
T 3ite_A           93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDT--SDILN  170 (562)
T ss_dssp             HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCCCTTCEEEETTCHHHHHHHHHSCC--SCCCC
T ss_pred             HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccccCccceeecccchhhhhhcccccc--ccccc
Confidence            999999999999999999999999999999999999999987654433211 112222222222222221111  11223


Q ss_pred             ccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC-------CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCC
Q 015325          188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-------PKRVSPAVMLFTMPYFHIYGLFFCFRAAALME  260 (409)
Q Consensus       188 ~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~-------~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~  260 (409)
                      ...++++++|+|||||||.||||++||+++...+......+       ..+...+++++..|++|..++..++.++..|+
T Consensus       171 ~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~  250 (562)
T 3ite_A          171 NYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGL  250 (562)
T ss_dssp             CCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTC
T ss_pred             CCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhccc
Confidence            34568899999999999999999999999987776543321       13678899999999999988888899999999


Q ss_pred             eEEEecCCC-HHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecc
Q 015325          261 TAVVMQRFD-LKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQA  339 (409)
Q Consensus       261 ~~v~~~~~~-~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~  339 (409)
                      ++++.+.+. +..+++.++++++|++.++|+++..+...    ..++++||.+++||+++++++.++|++.+ ++++++.
T Consensus       251 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~~~~  325 (562)
T 3ite_A          251 CAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSSSD-RVALVNV  325 (562)
T ss_dssp             EEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTTCS-SCEEEEE
T ss_pred             EEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhhCC-CcEEEEe
Confidence            999987643 57788999999999999999999887543    34578999999999999999999999877 8999999


Q ss_pred             cCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          340 YGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       340 yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ||+||++..++.... .......++|+|+++++++|+|+++++++++|+.|||+|+|++++.||||+|.
T Consensus       326 YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~  393 (562)
T 3ite_A          326 YGPTEVTIGCSAGRI-LPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPD  393 (562)
T ss_dssp             ECCGGGCSCSEEEEC-CTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTT
T ss_pred             eccchheeeeeeeee-cCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcc
Confidence            999999876554322 22345678999999999999998889999999999999999999999999885

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.5e-53  Score=457.62  Aligned_cols=352  Identities=20%  Similarity=0.215  Sum_probs=299.9

Q ss_pred             CCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLS  117 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~  117 (409)
                      .++.++|.++++++    ||++|++++  ++++||+||.++++++|+.|++ .|+++|++|+|+++|+++++++++||++
T Consensus       464 ~~l~~~~~~~~~~~----p~~~Av~~~--~~~lTY~eL~~~a~~lA~~L~~-~Gv~~g~~V~i~~~~s~~~vv~~lailk  536 (1304)
T 2vsq_A          464 KPLTYWFKEAVNAN----PDAPALTYS--GQTLSYRELDEEANRIARRLQK-HGAGKGSVVALYTKRSLELVIGILGVLK  536 (1304)
T ss_dssp             CCHHHHHHHHHHHC----TTSEEEESS--SCEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhC----CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHh-cCcCCcCEEEEEeCCCHHHHHHHHHHHH
Confidence            68999999999999    999999988  7899999999999999999999 9999999999999999999999999999


Q ss_pred             hCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcC--CeEEEeCCCcchhhhcccCCcccccccccCCCCEE
Q 015325          118 LGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLK--HRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVA  195 (409)
Q Consensus       118 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  195 (409)
                      +|++++|++|.++.+++.++++++++++++++.+.......+.  ...+.++..  .... ...   ........+++++
T Consensus       537 aG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~---~~~~~~~~~~~~a  610 (1304)
T 2vsq_A          537 AGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQ--TRFE-EQA---SDPATAIDPNDPA  610 (1304)
T ss_dssp             TTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCG--GGGG-SCS---SCCCCCCCTTSEE
T ss_pred             HCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccc--cccc-ccc---CCCCCCCCCCCeE
Confidence            9999999999999999999999999999999986654433221  122333221  1111 111   1122345678999


Q ss_pred             EEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHH
Q 015325          196 AIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKM  272 (409)
Q Consensus       196 ~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~  272 (409)
                      ||+|||||||.||||+++|+++.+. ......+ .+.+.|+++...|++|..+.+.++.++..|+++++.+.   .++..
T Consensus       611 yiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~  688 (1304)
T 2vsq_A          611 YIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTER  688 (1304)
T ss_dssp             EEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHH
T ss_pred             EEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHH
Confidence            9999999999999999999999865 4445555 68899999999999999888899999999999999864   68999


Q ss_pred             HHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325          273 MLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT  352 (409)
Q Consensus       273 ~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~  352 (409)
                      +.+.|+++++|++.++|+++..+....   ...+++||.+++|||+++.++.++|.+.+++.+++|.||+||++..++..
T Consensus       689 l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~  765 (1304)
T 2vsq_A          689 LTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAH  765 (1304)
T ss_dssp             HHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEE
T ss_pred             HHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheee
Confidence            999999999999999999999998752   22357899999999999999999999998788999999999998766543


Q ss_pred             CCCC--CCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          353 VGPD--ECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       353 ~~~~--~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      ....  ......++|+|+++++++|+| ++++++|.|+.|||+|+|+++++||||+|.
T Consensus       766 ~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~  822 (1304)
T 2vsq_A          766 VVHDLPDSISSLPIGKPISNASVYILN-EQSQLQPFGAVGELCISGMGVSKGYVNRAD  822 (1304)
T ss_dssp             ECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBCCTTCCEEEEEEETTCCCCBTTCHH
T ss_pred             eccCccccCCCCCCceeeCCCEEEEEC-CCcCCCCCCCceEEEEeccccCccccCCcc
Confidence            2221  233456899999999999999 889999999999999999999999999863

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.6e-54  Score=422.84  Aligned_cols=343  Identities=19%  Similarity=0.247  Sum_probs=282.6

Q ss_pred             CCHHHHHhhccCCCCCCCCC-CcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           38 ISAVDYVSSLRATLPWRDDD-TVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        38 ~~~~~~l~~~~~~~~~~~p~-~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      .|+.+.|.++++++    |+ ++|++++  ++++||+||.++++++|+.|..      |++|+++++|+++++++++||+
T Consensus        22 ~tl~~~l~~~a~~~----p~d~~Al~~~--~~~~Ty~eL~~~~~~~A~~L~~------~~~V~i~~~~~~~~~~~~la~~   89 (505)
T 3nyq_A           22 SSLFPALSPAPTGA----PADRPALRFG--ERSLTYAELAAAAGATAGRIGG------AGRVAVWATPAMETGVAVVAAL   89 (505)
T ss_dssp             --CCTTTSSCCCSG----GGGSEEEEET--TEEEEHHHHHHHHHHHHTTCC---------CEEEECCSSHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHhC----CCCCeEEEEC--CeeeeHHHHHHHHHHHHhhccC------CCEEEEEcCCCHHHHHHHHHHH
Confidence            67888888888888    65 9999998  8999999999999999987753      7899999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA  196 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (409)
                      ++|++++|+++.++.+++.+++++++++++|++.+............+..+...          ..........++++++
T Consensus        90 ~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~d~a~  159 (505)
T 3nyq_A           90 LAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRA----------RGAVPEDGADDGDPAL  159 (505)
T ss_dssp             HHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTC----------CCCCCCCCCCTTSEEE
T ss_pred             HhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhcccccccccccc----------ccCCCCCCCCCCCeEE
Confidence            999999999999999999999999999999998642111111122222222100          0011223456789999


Q ss_pred             EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHHHHH
Q 015325          197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKMMLK  275 (409)
Q Consensus       197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~~~~  275 (409)
                      |+|||||||.||||++||+++...+......+ ++.+.|++++.+|++|..++ ..++.++..|+++++.+.+++..+++
T Consensus       160 i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~  238 (505)
T 3nyq_A          160 VVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR  238 (505)
T ss_dssp             EEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHH
T ss_pred             EEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHH
Confidence            99999999999999999999999988888877 68899999999999999998 67899999999999999999999999


Q ss_pred             HHHHhcceeEeechHHHHHHHhCCCC---CCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceeccc
Q 015325          276 AVEEFRVTHAAVTPPIVVAMSKGGST---DGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRT  352 (409)
Q Consensus       276 ~i~~~~~t~l~~~p~~l~~l~~~~~~---~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~  352 (409)
                      .+ ++++|+++++|+++..+.+....   ....++++|.+++||+++++++.+++++.+ ++++++.||+||++..++. 
T Consensus       239 ~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~-  315 (505)
T 3nyq_A          239 EL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRRVIERYGMTETLMNTSV-  315 (505)
T ss_dssp             HH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEEC-
T ss_pred             HH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCeeecccchhhccccccc-
Confidence            99 89999999999999999874221   122467899999999999999999999998 8999999999999876554 


Q ss_pred             CCCCCCCCCCccccccCCceEEEecCCCCCCCCC---CCcceEEEecCccccccCCCCC
Q 015325          353 VGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPP---GKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       353 ~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~---g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                       ........+++|+|+++++++|+| ++|++++.   |+.|||+|+|++++.||||+|.
T Consensus       316 -~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~  372 (505)
T 3nyq_A          316 -RADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPD  372 (505)
T ss_dssp             -CTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHH
T ss_pred             -CCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChh
Confidence             334455678999999999999999 88999886   8999999999999999999863

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=100.00  E-value=2.5e-33  Score=262.68  Aligned_cols=207  Identities=19%  Similarity=0.167  Sum_probs=172.7

Q ss_pred             cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhh---ccCCCCCCCCEEEEeCch-hhHHhHHHHHHHHHhCCeEEE
Q 015325          189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV  264 (409)
Q Consensus       189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~v~  264 (409)
                      ..++++++|+|||||||.||+|.++|+++........   ... +..++|++++..|+ +|..++...+.++..|+ +++
T Consensus        88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~  165 (369)
T 3hgu_A           88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHR-PGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF  165 (369)
T ss_dssp             SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTS-TTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred             CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhh-CCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence            4678899999999999999999999999998887543   333 57889999999999 99999977777799999 666


Q ss_pred             ecCCCHH-----------------------HHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCH
Q 015325          265 MQRFDLK-----------------------MMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGK  321 (409)
Q Consensus       265 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~  321 (409)
                      ...+++.                       .+++.|+++++|++.++|+++..|++........+++||.+++||+++++
T Consensus       166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~  245 (369)
T 3hgu_A          166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL  245 (369)
T ss_dssp             CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred             CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence            6677877                       88889999999999999999999987743223446789999999999999


Q ss_pred             HHHHHHH-HhCCCCceecccCcccccceecccCCCCCCCCCC-ccccc------cCCceEEEecCCCCCCCCCCCcceEE
Q 015325          322 DTIMAFA-SKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWG-STGRL------SAGLEAKIVDPETGDSLPPGKEGELS  393 (409)
Q Consensus       322 ~~~~~~~-~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~-s~G~p------~~~~~v~i~d~~~g~~~~~g~~Gei~  393 (409)
                      ++.++++ +.||++++++.||+||+++.+...        +. ++|+|      +++++++|+|+++|+++++|+.|||+
T Consensus       246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~--------~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~  317 (369)
T 3hgu_A          246 DEIKFIASEILPDCEFSASYGSTSALGVSRSL--------LITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVI  317 (369)
T ss_dssp             HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEEC--------CBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEE
T ss_pred             HHHHHHHHHhCCCcEEEcccCchhhhcceecc--------ccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEE
Confidence            9999999 999999999999999998655331        12 58898      99999999997699999999999999


Q ss_pred             EecC---ccccccCC
Q 015325          394 IRGP---TIMKGIFL  405 (409)
Q Consensus       394 v~g~---~v~~gY~~  405 (409)
                      |++.   ..+.+|+.
T Consensus       318 vt~l~~~~~l~ry~t  332 (369)
T 3hgu_A          318 VTHLSPWAFYPRVAE  332 (369)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             EEEcCcccccccccC
Confidence            9973   23556654

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.97  E-value=2.1e-31  Score=255.16  Aligned_cols=204  Identities=21%  Similarity=0.211  Sum_probs=171.7

Q ss_pred             cCC-CCEEEEEcCCCCCCCcchhhhccHHHHHHHHHh---hccCCCCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEE
Q 015325          189 VCQ-SDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS---FASSPKRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAV  263 (409)
Q Consensus       189 ~~~-~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~---~~~~~~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v  263 (409)
                      ..+ +++++++|||||||.||+|++||+++.......   ...+ ++.++|+++...|+.|..+. ..++.++..|++++
T Consensus        82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~  160 (436)
T 3qov_A           82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV  160 (436)
T ss_dssp             SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred             CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence            345 789999999999999999999999997665554   3334 57899999999998765555 67788999999999


Q ss_pred             EecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCC--CCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccC
Q 015325          264 VMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGY--DLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYG  341 (409)
Q Consensus       264 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG  341 (409)
                      +.+.+++..+++.|+++++|++.++|+++..|.+.......  .+++||.+++||+++++++.++|++.| ++++++.||
T Consensus       161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG  239 (436)
T 3qov_A          161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSFG  239 (436)
T ss_dssp             CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred             eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecCc
Confidence            99888999999999999999999999999999876433333  378999999999999999999999999 999999999


Q ss_pred             cccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCc
Q 015325          342 LTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT  398 (409)
Q Consensus       342 ~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~  398 (409)
                      +||+++.++....    ......|.|.++++++|+|+++|+++++|+.|||+|+|..
T Consensus       240 ~TE~~~~~~~~~~----~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~  292 (436)
T 3qov_A          240 MTEMNGPGVAFEC----QEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD  292 (436)
T ss_dssp             EGGGTEEEEEEEC----TTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESS
T ss_pred             chhhcCCeeEEec----CCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccC
Confidence            9999654332111    1223477788899999999999999999999999999853

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.97  E-value=1.5e-31  Score=248.86  Aligned_cols=195  Identities=19%  Similarity=0.190  Sum_probs=169.9

Q ss_pred             CCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecCCCH
Q 015325          191 QSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQRFDL  270 (409)
Q Consensus       191 ~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~~~~  270 (409)
                      .++++||+|||||||.||||++||+++.+.+......+ ++.++|++++.+|++|.+|+..++.++..|+++++.+..  
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--  112 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--  112 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--
Confidence            47899999999999999999999999999998888888 789999999999999999998889999999999988642  


Q ss_pred             HHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceec
Q 015325          271 KMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF  350 (409)
Q Consensus       271 ~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~  350 (409)
                      ...++.|+++++|++.++|+++..|++.... ..++++||.+++||+++++++.+++++.  ++++++.||+||+++.++
T Consensus       113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~-~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~  189 (358)
T 4gs5_A          113 ANPLAGLDHADFDFVAMVPMQLQSILENSAT-SGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA  189 (358)
T ss_dssp             SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT-GGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred             ccHHHHHHHhCCeEEEcChHHHHHhhccccc-cccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence            2346778999999999999999999987643 3468999999999999999999999874  899999999999988776


Q ss_pred             ccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccC
Q 015325          351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF  404 (409)
Q Consensus       351 ~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~  404 (409)
                      ...  ......+.+|.+.||+++.+.+           .|||+++|+....|||
T Consensus       190 ~~~--~~~~~~g~~~~~~pgv~~~~~~-----------~Gel~~~g~~~~~g~~  230 (358)
T 4gs5_A          190 LKA--LNGPEASELYVFLPGIQYGVDE-----------RGCLHISGAVTNGQTV  230 (358)
T ss_dssp             EEE--CSSTTCCSCEEECTTCEEEECT-----------TSEEEEESGGGTTCCE
T ss_pred             ccc--ccccccceeeccCCCeEEEecC-----------cCceEEecccccCcce
Confidence            532  2334567899999999998755           4999999998887776

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.97  E-value=1.8e-30  Score=248.80  Aligned_cols=203  Identities=24%  Similarity=0.277  Sum_probs=169.3

Q ss_pred             cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhh---ccCCCCCCCCEEEEeCch-hhHHhHHHHHHHHHhCCeEEE
Q 015325          189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSF---ASSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV  264 (409)
Q Consensus       189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~---~~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~v~  264 (409)
                      ..++++++++|||||||.||+|++||+++........   ..+ ++.++|++++..|+ +|..++...+.++..|+++++
T Consensus        87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~  165 (437)
T 2y27_A           87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP  165 (437)
T ss_dssp             SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred             CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence            4568899999999999999999999999876654433   245 67899999999998 677777778899999999998


Q ss_pred             ecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCC--CCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCc
Q 015325          265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL  342 (409)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~--l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  342 (409)
                      .+.++++.+++.|+++++|++.++|+++..|.+.......+  +++||.+++||+++++++.+++++.| ++++++.||+
T Consensus       166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~  244 (437)
T 2y27_A          166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYGL  244 (437)
T ss_dssp             CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCCc
Confidence            88889999999999999999999999999998754322222  47899999999999999999999999 9999999999


Q ss_pred             ccccce-ecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecC
Q 015325          343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP  397 (409)
Q Consensus       343 tE~~~~-~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~  397 (409)
                      ||+++. ++. ....   .....+.|.+++.++|+|+++|+++++|+.|||+|+|.
T Consensus       245 TE~~g~~~~~-~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~  296 (437)
T 2y27_A          245 SEVMGPGVAS-ECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL  296 (437)
T ss_dssp             TTTTEEEEEE-CCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES
T ss_pred             hhhcCCeeEE-ecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC
Confidence            998543 332 1111   11126667799999999988899999999999999984

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.97  E-value=2.7e-30  Score=248.05  Aligned_cols=204  Identities=23%  Similarity=0.257  Sum_probs=169.2

Q ss_pred             cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhc---cCCCCCCCCEEEEeCch-hhHHhHHHHHHHHHhCCeEEE
Q 015325          189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFA---SSPKRVSPAVMLFTMPY-FHIYGLFFCFRAAALMETAVV  264 (409)
Q Consensus       189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~---~~~~~~~~d~~l~~~p~-~~~~g~~~~~~~l~~G~~~v~  264 (409)
                      ..++++++++|||||||.||+|++||+++.........   .+ ++.++|++++..|+ +|..++...+.++..|+++++
T Consensus        89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~  167 (443)
T 2y4o_A           89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP  167 (443)
T ss_dssp             SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred             CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence            45688999999999999999999999998766544332   45 67899999999998 577777778899999999999


Q ss_pred             ecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCC--CCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCc
Q 015325          265 MQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL  342 (409)
Q Consensus       265 ~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~--l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  342 (409)
                      .+.++++.+++.|+++++|++.++|+++..|.+.......+  +++||.+++||+++++++.++|++.| ++++++.||+
T Consensus       168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG~  246 (443)
T 2y4o_A          168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYGL  246 (443)
T ss_dssp             CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccCc
Confidence            98889999999999999999999999999998754322222  47899999999999999999999999 9999999999


Q ss_pred             ccccce-ecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCc
Q 015325          343 TESTAG-VFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPT  398 (409)
Q Consensus       343 tE~~~~-~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~  398 (409)
                      ||+++. +.. ....   .....+.|.+++.++|+|+++|+++++|+.|||+|+|..
T Consensus       247 TE~~g~~~~~-~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t  299 (443)
T 2y4o_A          247 SEVMGPGVAC-ECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLT  299 (443)
T ss_dssp             TTTTEEEEEE-ECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESS
T ss_pred             hhhcCCeEEe-ccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCC
Confidence            998543 332 1111   111256677899999999888999999999999999853

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=96.37  E-value=0.014  Score=56.42  Aligned_cols=88  Identities=14%  Similarity=0.089  Sum_probs=48.9

Q ss_pred             cceeeecCCCCCHHHHHHHHHhCCCCcee-cccCcccccceecccCCCCCCCCCCccccc-cCC-ceEEEecCCC---C-
Q 015325          309 LETVACGAAPLGKDTIMAFASKFPKVVLV-QAYGLTESTAGVFRTVGPDECRRWGSTGRL-SAG-LEAKIVDPET---G-  381 (409)
Q Consensus       309 Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p-~~~-~~v~i~d~~~---g-  381 (409)
                      |..++.||-   ..-..+++..+++.+++ ..|++||+ .+...   ......+...+.. +|+ .-++.++.++   . 
T Consensus       302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~---~~p~~~~~~~~~~L~~~~~ffEFip~~~~~~~~  374 (581)
T 4eql_A          302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGIN---LDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKND  374 (581)
T ss_dssp             EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEEC---SCTTSCGGGCCEEECTTSSEEEEEECSTTCCSS
T ss_pred             EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeec---cCCCCCcccCceeecCCcEEEEEEeccccCCCc
Confidence            555666773   44445666666788888 89999995 22222   1111112223332 333 3345554221   1 


Q ss_pred             ----CCCCCCCcceEEEecCcccccc
Q 015325          382 ----DSLPPGKEGELSIRGPTIMKGI  403 (409)
Q Consensus       382 ----~~~~~g~~Gei~v~g~~v~~gY  403 (409)
                          ..|..|+.+||+|+..+-.-.|
T Consensus       375 ~v~l~eVe~G~~YelViTt~~GL~RY  400 (581)
T 4eql_A          375 VVDLEDVKLGCTYEPVVTNFAGLYRM  400 (581)
T ss_dssp             CEEGGGCCTTCEEEEEEECSSSCCSE
T ss_pred             EeCHHHcCCCceEEEEEeeccceeeE
Confidence                4467999999999987533333

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=94.92  E-value=0.059  Score=52.03  Aligned_cols=30  Identities=37%  Similarity=0.381  Sum_probs=24.1

Q ss_pred             CCCCEEEEEcCCCCC-CCcchhhhccHHHHH
Q 015325          190 CQSDVAAIMYSSGTT-GRVKGVMLTHRNLTA  219 (409)
Q Consensus       190 ~~~~~a~i~~TSGTT-G~pK~v~~s~~~l~~  219 (409)
                      .++.+.++.-||||| |++|-|++|.+.+-.
T Consensus        96 ~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~  126 (581)
T 4epl_A           96 TGHPVPAISLSSGTSQGRPKFIPFTDELMEN  126 (581)
T ss_dssp             SSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred             CCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence            345567889999999 779999999887643

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=94.87  E-value=0.084  Score=51.25  Aligned_cols=30  Identities=23%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             CCCCEEEEEcCCCCC-CCcchhhhccHHHHH
Q 015325          190 CQSDVAAIMYSSGTT-GRVKGVMLTHRNLTA  219 (409)
Q Consensus       190 ~~~~~a~i~~TSGTT-G~pK~v~~s~~~l~~  219 (409)
                      .++.+.++.-||||| |+||.|++|.+.+-.
T Consensus        97 ~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~  127 (609)
T 4b2g_A           97 SAHPISEFLTSSGTSAGERKLMPTIQEELDR  127 (609)
T ss_dssp             CSSCCCEEEEEEEEETTEEEEEEECTTHHHH
T ss_pred             CCCCCCeEEeCCCCCCCCceeeecCHHHHHH
Confidence            456677899999999 789999999887643

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=91.81  E-value=0.88  Score=42.47  Aligned_cols=87  Identities=14%  Similarity=0.101  Sum_probs=69.6

Q ss_pred             ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCC--chHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 015325           68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI  145 (409)
Q Consensus        68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~--~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~  145 (409)
                      ..+|...+...+..++..+.. .|+.++|++...++-+.  ..+...++++..|+..++++.. +.+.+.+.+++.++.+
T Consensus       108 v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~  185 (437)
T 2y27_A          108 VGYTAADIDTWANLVARSIRA-AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDI  185 (437)
T ss_dssp             EEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred             EecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCE
Confidence            358999999888888888887 89999999998887543  2344567889999998887764 7888999999999999


Q ss_pred             EEEcCchHHHH
Q 015325          146 AFATSSVVHKL  156 (409)
Q Consensus       146 ii~~~~~~~~~  156 (409)
                      ++........+
T Consensus       186 l~~~Ps~~~~l  196 (437)
T 2y27_A          186 IMVTPSYMLSI  196 (437)
T ss_dssp             EEECHHHHHHH
T ss_pred             EEECHHHHHHH
Confidence            99887655443

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=91.39  E-value=1  Score=42.12  Aligned_cols=87  Identities=15%  Similarity=0.108  Sum_probs=69.7

Q ss_pred             ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCC--chHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 015325           68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI  145 (409)
Q Consensus        68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~--~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~  145 (409)
                      ..+|...+...+..++..+.. .|+.++|++...++-+.  ..+...++++..|+..++++.. +.+.+.+.+++.++.+
T Consensus       110 v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~  187 (443)
T 2y4o_A          110 VGYTARDIDTWANVTARSIRA-AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKI  187 (443)
T ss_dssp             EEECHHHHHHHHHHHHHHHHH-TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred             EecCHHHHHHHHHHHHHHHHH-cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcE
Confidence            358999999888888888887 89999999998887543  2344567888999998887765 7888899999999999


Q ss_pred             EEEcCchHHHH
Q 015325          146 AFATSSVVHKL  156 (409)
Q Consensus       146 ii~~~~~~~~~  156 (409)
                      ++........+
T Consensus       188 l~~~Ps~~~~l  198 (443)
T 2y4o_A          188 ILVTPSYMLNL  198 (443)
T ss_dssp             EEECHHHHHHH
T ss_pred             EEECHHHHHHH
Confidence            99877655443

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=91.12  E-value=1.1  Score=41.78  Aligned_cols=87  Identities=17%  Similarity=0.079  Sum_probs=70.2

Q ss_pred             ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCC--chHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeE
Q 015325           68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSI--EIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI  145 (409)
Q Consensus        68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~--~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~  145 (409)
                      ..+|.+.+...+..++..+.. .|+.++|++....+-+.  ..+..+++++..|+..++.++. ..+.+...+++.++.+
T Consensus       104 v~~th~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~  181 (436)
T 3qov_A          104 IVHSQHDLDSWANLVARCLYM-VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTA  181 (436)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHH-TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCE
T ss_pred             EEECHHHHHHHHHHHHHHHHH-cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCE
Confidence            458999999988888888887 89999999998887542  2344567889999998887755 6788899999999999


Q ss_pred             EEEcCchHHHH
Q 015325          146 AFATSSVVHKL  156 (409)
Q Consensus       146 ii~~~~~~~~~  156 (409)
                      ++........+
T Consensus       182 ~~~~P~~~~~l  192 (436)
T 3qov_A          182 LHAIPSYAIRL  192 (436)
T ss_dssp             EECCHHHHHHH
T ss_pred             EEECHHHHHHH
Confidence            99887665544

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=82.34  E-value=4.5  Score=36.50  Aligned_cols=87  Identities=10%  Similarity=-0.023  Sum_probs=62.8

Q ss_pred             ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCc--hHHHHHHHHHhCCeEccCCCCCCHH-------------
Q 015325           68 LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIE--IPILYFSLLSLGVIISPANPVNTES-------------  132 (409)
Q Consensus        68 ~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~--~~~~~~A~~~~G~~~v~l~~~~~~~-------------  132 (409)
                      ..+|...+...+..++..+.. .|+.++|++...++-+..  .+...++++..|+..++.+  .++.             
T Consensus       109 v~~t~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~  185 (369)
T 3hgu_A          109 VVAYDAWIEALISWRMSGYQH-RPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTAT  185 (369)
T ss_dssp             EEECHHHHHHHHHHHTTTTTT-STTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHH
T ss_pred             EEECHHHHHHHHHHHHhhHHh-hCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhh
Confidence            458999999888877777887 899999999998886333  2334555688998555433  3444             


Q ss_pred             ----------HHHHHHhhcCCeEEEEcCchHHHHh
Q 015325          133 ----------EISRQIQLSNPVIAFATSSVVHKLA  157 (409)
Q Consensus       133 ----------~l~~~l~~~~~~~ii~~~~~~~~~~  157 (409)
                                ++.+.+++.++.+++........+.
T Consensus       186 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~  220 (369)
T 3hgu_A          186 VRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELL  220 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence                      6666888899998888776665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	409
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	4e-60
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	1e-49
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-49
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	4e-46
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	2e-34
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	4e-31
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-25

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  204 bits (519), Expect = 4e-60
 Identities = 66/393 (16%), Positives = 130/393 (33%), Gaps = 44/393 (11%)

Query: 54  RDDDTVALI----NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109
            + D  A+I    ++     +S+ E  R     A+ L ++  + K D   +      E  
Sbjct: 84  ENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDL-GIKKGDVVAIYMPMVPEAA 142

Query: 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSP 169
           +   +   +G + S      +   ++  I  S+  +       V     +  +  + D+ 
Sbjct: 143 VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDAL 202

Query: 170 EFDSMT---------------------------MSWNSKHELDRAKVCQSDVAAIMYSSG 202
           +  ++T                           +   +  E     +   D   I+Y+SG
Sbjct: 203 KNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSG 262

Query: 203 TTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETA 262
           +TG+ KGV+ T        A++F          +   T     + G  +           
Sbjct: 263 STGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGAT 322

Query: 263 VVM-----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGG--STDGYDLSSLETVACG 315
            +M            M + V++ +V      P  + A+   G  + +G D SSL  +   
Sbjct: 323 TLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSV 382

Query: 316 AAPLGKDTIMAFASKF--PKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEA 373
             P+  +    +  K    K  +V  +  TE+   +   +      + GS  R   G++ 
Sbjct: 383 GEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQP 442

Query: 374 KIVDPETGDSLPPGKEGELSIRG--PTIMKGIF 404
            +VD E G       EG L I    P   + +F
Sbjct: 443 ALVDNE-GHPQEGATEGNLVITDSWPGQARTLF 474

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  174 bits (441), Expect = 1e-49
 Identities = 105/397 (26%), Positives = 186/397 (46%), Gaps = 28/397 (7%)

Query: 27  PPIDLPPEDAPISAVDYVSSLR-ATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASY 85
           P    P ED       + +  R A +P     T+A  ++   + ++++E+   +  LA  
Sbjct: 8   PAPFYPLEDGTAGEQLHKAMKRYALVP----GTIAFTDAHIEVNITYAEYFEMSVRLAEA 63

Query: 86  LQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVI 145
           ++    L+ N    V S NS++  +     L +GV ++PAN +  E E+   + +S P +
Sbjct: 64  MKRY-GLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTV 122

Query: 146 AFATSSVVHKLAKLK------HRTILIDSPEFDSMTMSW------------NSKHELDRA 187
            F +   + K+  ++       + I++DS        S             N    +  +
Sbjct: 123 VFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPES 182

Query: 188 KVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA--AVASSFASSPKRVSPAVMLFTMPYFH 245
                 +A IM SSG+TG  KGV L HR      + A       + +    +L  +P+ H
Sbjct: 183 FDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 242

Query: 246 IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYD 305
            +G+F            V+M RF+ ++ L++++++++  A + P +    +K    D YD
Sbjct: 243 GFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD 302

Query: 306 LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTG 365
           LS+L  +A G APL K+   A A +F    + Q YGLTE+T+ +   + P+   + G+ G
Sbjct: 303 LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAI--LITPEGDDKPGAVG 360

Query: 366 RLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG 402
           ++    EAK+VD +TG +L   + GEL +RGP IM G
Sbjct: 361 KVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG 397

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  174 bits (442), Expect = 2e-49
 Identities = 69/395 (17%), Positives = 133/395 (33%), Gaps = 43/395 (10%)

Query: 54  RDDDTVALI----NSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP 109
           +  +  A+I        G  +++ E       +A  L     + K DT  V      E  
Sbjct: 71  KTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI 130

Query: 110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSP 169
           I   ++  +G I S      + + +  +I   +  +   T         ++ + I+ D+ 
Sbjct: 131 ITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDAL 190

Query: 170 E--------------------------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGT 203
                                       D  T     K       V   D   ++Y+SG+
Sbjct: 191 RETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGS 250

Query: 204 TGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV 263
           TG  KGV  +          +   +       V         I G  +      L   A 
Sbjct: 251 TGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCAT 310

Query: 264 VM-----QRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGST--DGYDLSSLETVACGA 316
           ++        +       ++E +VT   V P  +  + + G +  + + L SL  +    
Sbjct: 311 LVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVG 370

Query: 317 APLGKDTIMAFASKFPK--VVLVQAYGLTESTAGVFRTV-GPDECRRWGSTGRLSAGLEA 373
            P+  +    ++ K  K  + +V  Y  TES + +   + G     + GS      G++A
Sbjct: 371 EPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDA 430

Query: 374 KIVDPETGDSLPPGK-EGELSIRG--PTIMKGIFL 405
            ++DP TG+ L     EG L+++   P+  + I+ 
Sbjct: 431 VVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWK 465

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  164 bits (415), Expect = 4e-46
 Identities = 76/369 (20%), Positives = 144/369 (39%), Gaps = 24/369 (6%)

Query: 57  DTVALINSVTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFS 114
               +    TG   R +++E  +R   L   L+ +  +   D    L  N       YF+
Sbjct: 26  RKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRAL-GVGVGDRVATLGFNHFRHLEAYFA 84

Query: 115 LLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-------KLAKLKHRTILID 167
           +  +G ++  ANP  +  EI+  +  +   +     +++        +L  ++H  ++ +
Sbjct: 85  VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDE 144

Query: 168 SPEFDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTA-AVASSFA 226
                 +        E D  +V +     + Y++GTTG  KGV+ +HR L   ++A+S  
Sbjct: 145 KAPEGYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLV 204

Query: 227 SSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAV-VMQRFDLKMMLKAVEEFRVTHA 285
                    V+L  +P FH+      + A  +    V    R D   +++  +   VT  
Sbjct: 205 DGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFT 264

Query: 286 AVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTES 345
           A  P + +A++    + G+ L +L  +  G +   +  I  F     +V   Q YGLTE+
Sbjct: 265 AGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEV--RQGYGLTET 322

Query: 346 TAGVFRTVGPDEC---------RRWGSTGRLSAGLEAKIVDPETGDSLPPGKE-GELSIR 395
           +  V +                     TG     +  ++ D E       GK  GE+ ++
Sbjct: 323 SPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLK 382

Query: 396 GPTIMKGIF 404
           GP I  G +
Sbjct: 383 GPWITGGYY 391

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  132 bits (331), Expect = 2e-34
 Identities = 66/392 (16%), Positives = 127/392 (32%), Gaps = 30/392 (7%)

Query: 42  DYVSSLRATLPWRDD--------------DTVALINSVTGLRVSFSEFTRRTNSLASYLQ 87
           +   + R    W  +              D +A+         S+ E   R + LA+  Q
Sbjct: 11  ELAETYRKNGCWAGETFGDLLRDRAAKYGDRIAITCG--NTHWSYRELDTRADRLAAGFQ 68

Query: 88  NVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAF 147
            +  + + D   V   N  E   + F+L  LG +   A P +  SEI+   + +      
Sbjct: 69  KL-GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYI 127

Query: 148 ATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKH----------ELDRAKVCQSDVAAI 197
              +      +   R +    P   ++ ++  ++            +   +V  SDVA +
Sbjct: 128 IPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFL 187

Query: 198 MYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAA 257
             S G+TG  K +  TH +   ++  S        S   +       +            
Sbjct: 188 QLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVL 247

Query: 258 LM-ETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGA 316
                 V+            +E  +VT  A+ PP+ +      S+   DLSSL+ +  G 
Sbjct: 248 YAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGG 307

Query: 317 APLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIV 376
           A    +      + F   +              +  +   E     + G+  +  +   V
Sbjct: 308 AKFSAEAARRVKAVFGCTLQQVFGMAEGLVN--YTRLDDPEEIIVNTQGKPMSPYDESRV 365

Query: 377 DPETGDSLPPGKEGELSIRGPTIMKGIFLPHF 408
             +    + PG+ G L  RGP  ++G +    
Sbjct: 366 WDDHDRDVKPGETGHLLTRGPYTIRGYYKAEE 397

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  122 bits (306), Expect = 4e-31
 Identities = 64/350 (18%), Positives = 125/350 (35%), Gaps = 18/350 (5%)

Query: 57  DTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL 116
           + VA++      ++++ E   + N LA        + K+    ++   SI++ I   ++L
Sbjct: 38  NNVAIVCE--NEQLTYHELNVKANQLARIFIEKG-IGKDTLVGIMMEKSIDLFIGILAVL 94

Query: 117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTM 176
             G    P +    +  I   +  S   +      +VH +  ++    +     F+  T+
Sbjct: 95  KAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEI---FEEDTI 151

Query: 177 SWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAV 236
                  L       +D+A ++Y+SGTTG  KG ML H+ ++        S        +
Sbjct: 152 KIREGTNLH-VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRI 210

Query: 237 MLFTMPYFH--IYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVA 294
             F    F   ++ +F      A +   +     D     + + +  +T   + P  VV 
Sbjct: 211 GQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVH 270

Query: 295 MSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTVG 354
           +      D   + S++T+    +      +  +     KV  + AYG TE+T      V 
Sbjct: 271 L------DPERILSIQTLITAGSATSPSLVNKW---KEKVTYINAYGPTETTICATTWVA 321

Query: 355 PDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIF 404
             E                  +  E       G+ GEL I G  + +G +
Sbjct: 322 TKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYW 371

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  105 bits (261), Expect = 3e-25
 Identities = 77/364 (21%), Positives = 138/364 (37%), Gaps = 15/364 (4%)

Query: 54  RDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYF 113
           R  D  AL     GLR++ +E   R  ++A+ L     L       V++ NS ++ I   
Sbjct: 14  RAPDHCALAVPARGLRLTHAELRARVEAVAARLHADG-LRPQQRVAVVAPNSADVVIAIL 72

Query: 114 SLLSLGVIISPANPVNTESEISRQIQLSNP--VIAFATSSVVHKLAKLKHRTILIDSPEF 171
           +L  LG + +  NP    +E++  I+       +      V   + +      +I   + 
Sbjct: 73  ALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDL 132

Query: 172 DSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVAS-SFASSPK 230
                 ++    ++  +   +  A I Y+SGTTG  K  ++  R   + V   S     +
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLR 192

Query: 231 RVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR-FDLKMMLKAVEEFRVTHAAVTP 289
                V+L  MP +H+ G F    AA  ++   V+   F     L+ V++ +VT    TP
Sbjct: 193 HGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATP 252

Query: 290 PIVVAMSKGGSTDGYD--LSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTA 347
             + A++   +  G    L SL  V    A +    +       P    V  YG TE+  
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEK-VNIYGTTEAMN 311

Query: 348 GVFRTVGPDECRRWGSTGRLSAGLEAKIVDP--ETGDSLPPGKEGELSIRGPTIMKGIFL 405
            ++         + G+        E +IV       + +  G+EGEL +         +L
Sbjct: 312 SLY-----MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYL 366

Query: 406 PHFE 409
              +
Sbjct: 367 NQPQ 370

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	409
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	86.43
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	82.79
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	80.98
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	80.72

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.7e-56  Score=445.89  Aligned_cols=364  Identities=18%  Similarity=0.209  Sum_probs=297.7

Q ss_pred             CCCCCHHHHHhhcc-CCCCCCCCCCcEEEeCC----CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchH
Q 015325           35 DAPISAVDYVSSLR-ATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP  109 (409)
Q Consensus        35 ~~~~~~~~~l~~~~-~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~  109 (409)
                      +..+|+++.+.++. +++    ||++|+++..    +.+++||+||.++++++|+.|++ +||++||+|+++++|+++++
T Consensus        68 ~~~~N~~~n~ldrh~~~~----~d~~Ali~~~~~~~~~~~~TY~eL~~~v~~~A~~L~~-~Gv~~Gd~V~i~~~n~~e~i  142 (643)
T d1pg4a_          68 DGTLNLAANCLDRHLQEN----GDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLD-LGIKKGDVVAIYMPMVPEAA  142 (643)
T ss_dssp             TCEECHHHHHTGGGHHHH----TTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEECCSSHHHH
T ss_pred             CChhhHHHHHHHHHHHhC----CCCEEEEEEecCCCCceEEeHHHHHHHHHHHHHHHHH-cCCCCCCEEEEecccchHHH
Confidence            55699998877654 455    9999999542    23679999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHH-------------HHhhc---CC-eEEEeCCCc--
Q 015325          110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH-------------KLAKL---KH-RTILIDSPE--  170 (409)
Q Consensus       110 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~-------------~~~~~---~~-~~~~~~~~~--  170 (409)
                      +++|||+++|++++|+++.++.+++.+++++++++++|+++....             .+...   .. .++......  
T Consensus       143 v~~lA~~~~Gav~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~  222 (643)
T d1pg4a_         143 VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD  222 (643)
T ss_dssp             HHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCC
T ss_pred             HHHHHHHHhCeEEEecCCCCCHHHHHHHHHhcCCCEEEEcchhhhhccccchhhhHHHHHhccccccceEEEEeccCCcc
Confidence            999999999999999999999999999999999999999764221             11110   11 223322111  


Q ss_pred             ----------chhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHh-hccCCCCCCCCEEEE
Q 015325          171 ----------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASS-FASSPKRVSPAVMLF  239 (409)
Q Consensus       171 ----------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~-~~~~~~~~~~d~~l~  239 (409)
                                +.......  .........+++++++|+|||||||.||||++||++++...... ...+ ...++|++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-~~~~~d~~~~  299 (643)
T d1pg4a_         223 IDWQEGRDLWWRDLIEKA--SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-DYHPGDIYWC  299 (643)
T ss_dssp             CCCCBTTEEEHHHHHTTS--CSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-TCCTTCEEEE
T ss_pred             cccccccchhhhhhhccc--CcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHHHHhh-CCCCCCEEEE
Confidence                      01111111  11223344567899999999999999999999999977655443 4445 6889999999


Q ss_pred             eCchhhHHhH-HHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCccee
Q 015325          240 TMPYFHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETV  312 (409)
Q Consensus       240 ~~p~~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v  312 (409)
                      ..|++|.+++ +.++.+|+.|+++++.++    +++..+++.|+++++|++.++|+++..|++...  ....++++||.+
T Consensus       300 ~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~~dl~sLr~i  379 (643)
T d1pg4a_         300 TADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRIL  379 (643)
T ss_dssp             CSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEE
T ss_pred             eCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHHHHhCcchhccccCCCceEEE
Confidence            9999999998 567889999999999864    488999999999999999999999999988753  356678999999


Q ss_pred             eecCCCCCHHHHHHHHHhCC--CCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcc
Q 015325          313 ACGAAPLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEG  390 (409)
Q Consensus       313 ~~~G~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~G  390 (409)
                      +++|+++++++++++.+.++  ++++++.||+||+++.++.........+.+++|+|++|++++|+| ++|++++.|+.|
T Consensus       380 ~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd-~~g~~~~~g~~G  458 (643)
T d1pg4a_         380 GSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEGATEG  458 (643)
T ss_dssp             EEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCSSEEE
T ss_pred             EEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCCCEEEEEC-CCCCCCCCCceE
Confidence            99999999999999999983  678999999999987666533333445678999999999999999 889999999999


Q ss_pred             eEEEec--CccccccCCCC
Q 015325          391 ELSIRG--PTIMKGIFLPH  407 (409)
Q Consensus       391 ei~v~g--~~v~~gY~~~~  407 (409)
                      ||+|+|  |+++.|||+++
T Consensus       459 el~v~~~~p~~~~~~~~~~  477 (643)
T d1pg4a_         459 NLVITDSWPGQARTLFGDH  477 (643)
T ss_dssp             EEEECSCCTTCCCEETTCH
T ss_pred             EEEEecCCCcccccccCCh
Confidence            999999  57899999975

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=2.5e-54  Score=423.72  Aligned_cols=377  Identities=27%  Similarity=0.415  Sum_probs=309.6

Q ss_pred             ecCCCCCCCCCCCCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEc
Q 015325           23 HSLRPPIDLPPEDAPISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLS  102 (409)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~  102 (409)
                      +.+.|..++++    .++.++|.+.+++++.+ |+++|+++...++++||+||.+++.++|+.|++ +|+++||+|++++
T Consensus         6 ~~p~p~~p~~~----~t~~~~l~~~~~~~~~~-P~~~a~~d~~~~~~lTy~el~~~~~~lA~~L~~-~Gi~~Gd~Vai~~   79 (541)
T d1lcia_           6 KGPAPFYPLED----GTAGEQLHKAMKRYALV-PGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKR-YGLNTNHRIVVCS   79 (541)
T ss_dssp             ECCCCSSCCCS----SCHHHHHHHHHHHHHTS-TTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEEEC
T ss_pred             cCCCCCCCCCC----CCHHHHHHHHHHhhCCC-CCeEEEEeCCCCeEeeHHHHHHHHHHHHHHHHH-cCcCCCCEEEEEe
Confidence            34444444444    78999999888766433 888999988777899999999999999999999 9999999999999


Q ss_pred             CCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----C-CeEEEeCCC----c--
Q 015325          103 TNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----K-HRTILIDSP----E--  170 (409)
Q Consensus       103 ~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~-~~~~~~~~~----~--  170 (409)
                      +|+++++++++||+++|++++|+++.++.+++.++++.++++++|++++....+.+.     . ..++..+..    .  
T Consensus        80 ~ns~e~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (541)
T d1lcia_          80 ENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ  159 (541)
T ss_dssp             SSCSSTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBE
T ss_pred             CCCHHHHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEeeeccccccchhccccccccceeeeecCCccccccc
Confidence            999999999999999999999999999999999999999999999999876655421     1 123333221    1  


Q ss_pred             -chhhhcc----c-CCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCC--CCCCCCEEEEeCc
Q 015325          171 -FDSMTMS----W-NSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP--KRVSPAVMLFTMP  242 (409)
Q Consensus       171 -~~~~~~~----~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~--~~~~~d~~l~~~p  242 (409)
                       +......    . ............++++++|+|||||||.||+|++||++++...........  .....+++++.+|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p  239 (541)
T d1lcia_         160 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP  239 (541)
T ss_dssp             EHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred             hhhhhhhhhccccccccccCccccCCCCceEEEEeeccccccccccccccchhhhhhhhhhhhccccccccccccccccc
Confidence             1111111    0 001112223345688999999999999999999999999877766655442  4678899999999


Q ss_pred             hhhHHhHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHH
Q 015325          243 YFHIYGLFFCFRAAALMETAVVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKD  322 (409)
Q Consensus       243 ~~~~~g~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~  322 (409)
                      ++|.++....+..+..++..+.....+.......+.++++|.+.++|..+..+.........++++||.+++||++++++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~  319 (541)
T d1lcia_         240 FHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKE  319 (541)
T ss_dssp             TTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHH
T ss_pred             ccccccccccccccccccccccccccccchhHHHHhhhhccccccCccccccccccccccccccccceEEEecccccccc
Confidence            99999998888999999999999889999999999999999999999999999998887777889999999999999999


Q ss_pred             HHHHHHHhCCCCceecccCcccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccc
Q 015325          323 TIMAFASKFPKVVLVQAYGLTESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKG  402 (409)
Q Consensus       323 ~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~g  402 (409)
                      +.+++.+.++...+++.||+||+++.++.  +.......+++|+|+||++++|+|+++|++++.|+.|||+|+|++++.|
T Consensus       320 ~~~~~~~~~~~~~~~~~YG~TE~~~~~~~--~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~g  397 (541)
T d1lcia_         320 VGEAVAKRFHLPGIRQGYGLTETTSAILI--TPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSG  397 (541)
T ss_dssp             HHHHHHHHTTCSCCBCEECCGGGSSCSEE--CCCC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSE
T ss_pred             cccccccccCCceeeecCCccccCceEEe--cCcccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCe
Confidence            99999999966789999999999887766  4455667889999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q 015325          403 IFLPH  407 (409)
Q Consensus       403 Y~~~~  407 (409)
                      ||+++
T Consensus       398 Y~~~~  402 (541)
T d1lcia_         398 YVNNP  402 (541)
T ss_dssp             ETTBH
T ss_pred             eCCCh
Confidence            99875

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-52  Score=411.05  Aligned_cols=365  Identities=21%  Similarity=0.295  Sum_probs=301.3

Q ss_pred             CCCCCHHHHHhhccCCCCCCCCCCcEEEeCCCC--ceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHH
Q 015325           35 DAPISAVDYVSSLRATLPWRDDDTVALINSVTG--LRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILY  112 (409)
Q Consensus        35 ~~~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~--~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~  112 (409)
                      |..+|+.++|.++++++    ||++|+++..++  +++||+||.++++++|++|.+ .|+++||+|+++++|++++++++
T Consensus         8 ~~~~~l~~~l~~~a~~~----pd~~av~~~~~g~~~~~Ty~el~~~~~~~A~~L~~-~Gv~~gd~V~i~~~n~~e~~~~~   82 (534)
T d1v25a_           8 DEELNLWDFLERAAALF----GRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRA-LGVGVGDRVATLGFNHFRHLEAY   82 (534)
T ss_dssp             CCCCCTHHHHHHHHHHS----TTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHc----CCCeEEEEecCCceEEEcHHHHHHHHHHHHHHHHH-CCcCCCCEEEEEeCCCHHHHHHH
Confidence            44589999999999999    999999986544  469999999999999999999 99999999999999999999999


Q ss_pred             HHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhc-----CCeEEEeC-CCcchhhhcc-cCCccccc
Q 015325          113 FSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKL-----KHRTILID-SPEFDSMTMS-WNSKHELD  185 (409)
Q Consensus       113 ~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~-~~~~~~~~  185 (409)
                      |||+++|++++|+++.++.+++.++++.+++++++++..........     ........ .......... ........
T Consensus        83 lA~~~~G~v~vpl~~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (534)
T d1v25a_          83 FAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEAD  162 (534)
T ss_dssp             HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCC
T ss_pred             HHHHHhCcEEEecCCCCCHHHHHHHHHhhccccccccchhhhhHHHHhhcccccceeEEeeccccccccccccccccccc
Confidence            99999999999999999999999999999999999998777665532     12222222 1111111110 00111223


Q ss_pred             ccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC-CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEE
Q 015325          186 RAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS-PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVV  264 (409)
Q Consensus       186 ~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~-~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~  264 (409)
                      .....++++++++|||||||.||+|+++|++++.......... ......+++++.+|++|.+++...+..+..|+++++
T Consensus       163 ~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~~~g~~~v~  242 (534)
T d1v25a_         163 PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVL  242 (534)
T ss_dssp             CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEE
T ss_pred             ccccccCCcEEEEEecCCCCCccccccccchhhhhhhhhhhhcccccccccccccccchhhhccccccceeeeecceeee
Confidence            3455678899999999999999999999999987665444333 256788999999999999999777778888888777


Q ss_pred             ec-CCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcc
Q 015325          265 MQ-RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLT  343 (409)
Q Consensus       265 ~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~t  343 (409)
                      .. .+++..+...+.++++|++.++|+++..++........++++||.+++||+++++++.+++++.  +.++++.||+|
T Consensus       243 ~~~~~~~~~~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~--~~~i~~~yG~t  320 (534)
T d1v25a_         243 PGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM--GVEVRQGYGLT  320 (534)
T ss_dssp             CTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT--TCEEEEEEECG
T ss_pred             ccccccccccchhhhhccccccccCchhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh--CCeeeeecccc
Confidence            64 5899999999999999999999999999988766666778999999999999999999999865  78999999999


Q ss_pred             cccceecccCCCCCC---------CCCCccccccCCceEEEecCCCCCCCCC--CCcceEEEecCccccccCCCC
Q 015325          344 ESTAGVFRTVGPDEC---------RRWGSTGRLSAGLEAKIVDPETGDSLPP--GKEGELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       344 E~~~~~~~~~~~~~~---------~~~~s~G~p~~~~~v~i~d~~~g~~~~~--g~~Gei~v~g~~v~~gY~~~~  407 (409)
                      |++..++........         ...+++|+|+||++++|+| ++|++++.  |+.|||+|+|++++.||||++
T Consensus       321 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d-~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~  394 (534)
T d1v25a_         321 ETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNE  394 (534)
T ss_dssp             GGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCH
T ss_pred             ccccceeecccCccccccCccccccccccceeccCCcEEEEEC-CCCCCCCCCCCeeEEEEEcCCcccceecCCh
Confidence            999887653322211         1236899999999999999 88988876  679999999999999999975

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-52  Score=415.67  Aligned_cols=370  Identities=18%  Similarity=0.234  Sum_probs=292.0

Q ss_pred             CCCCCHHHHHhhc-cCCCCCCCCCCcEEEeCC----CCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchH
Q 015325           35 DAPISAVDYVSSL-RATLPWRDDDTVALINSV----TGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIP  109 (409)
Q Consensus        35 ~~~~~~~~~l~~~-~~~~~~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~  109 (409)
                      +..+|+++.+.++ ++++    ||++|+++..    +++++||+||.++++++|++|+..+||++||+|+++++|+++++
T Consensus        55 ~~~lN~~~n~ldr~a~~~----pd~~Ali~~~~~~g~~~~~Ty~eL~~~v~~~A~~L~~~~Gv~~Gd~V~i~~~n~~e~~  130 (640)
T d1ry2a_          55 NGQLNACYNCVDRHALKT----PNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI  130 (640)
T ss_dssp             TCEECHHHHHTHHHHTTC----TTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH
T ss_pred             CCchhHHHHHHHHHHhhC----CCCEEEEEEecCCCCeeEEeHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCHHHH
Confidence            4558997776654 5556    9999999532    24689999999999999999973289999999999999999999


Q ss_pred             HHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHH---------HHhh----c-CCe-EEEeCCCc----
Q 015325          110 ILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVH---------KLAK----L-KHR-TILIDSPE----  170 (409)
Q Consensus       110 ~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~----~-~~~-~~~~~~~~----  170 (409)
                      ++++||+++|++++|+++.++.+++.++++++++++++++.....         .+..    . ... ........    
T Consensus       131 ~~~lA~~~~Gav~vpi~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (640)
T d1ry2a_         131 ITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSV  210 (640)
T ss_dssp             HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSC
T ss_pred             HHHHHhccCceEeecCCCCCCHHHHHHHHHhhhccccccchhhhhccchhhhHHHHHhhhhhhcccceeeeecccccccc
Confidence            999999999999999999999999999999999999999864321         1111    0 111 11111000    


Q ss_pred             -------chhhhcccCCcccccccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCch
Q 015325          171 -------FDSMTMSWNSKHELDRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPY  243 (409)
Q Consensus       171 -------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~  243 (409)
                             ....................++++++|+|||||||.||||+++|++++..............++|++++.+|+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~~~~~~~~~~~~~~~~~~~~d~~l~~~pl  290 (640)
T d1ry2a_         211 AFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDI  290 (640)
T ss_dssp             CCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCT
T ss_pred             cccccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccccHHHHHHHHHHhhcCCCcccceeeccch
Confidence                   0000001111112233345678899999999999999999999999877665554432268899999999999


Q ss_pred             hhHHhH-HHHHHHHHhCCeEEEecC----CCHHHHHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceeeecC
Q 015325          244 FHIYGL-FFCFRAAALMETAVVMQR----FDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGA  316 (409)
Q Consensus       244 ~~~~g~-~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~~~G  316 (409)
                      +|.++. +.++.++..|+++++.+.    +++..+++.|+++++|++.++|+++..|.+...  ....++++||.+++||
T Consensus       291 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG  370 (640)
T d1ry2a_         291 GWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVG  370 (640)
T ss_dssp             TSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECS
T ss_pred             hhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccEEEcChHHHHHHHhccccccccCCCCceEEEEEec
Confidence            999997 678889999999998864    378999999999999999999999999988654  3466789999999999


Q ss_pred             CCCCHHHHHHHHHhCC--CCceecccCcccccceecccC-CCCCCCCCCccccccCCceEEEecCCCCCCC-CCCCcceE
Q 015325          317 APLGKDTIMAFASKFP--KVVLVQAYGLTESTAGVFRTV-GPDECRRWGSTGRLSAGLEAKIVDPETGDSL-PPGKEGEL  392 (409)
Q Consensus       317 ~~~~~~~~~~~~~~~~--~~~i~~~yG~tE~~~~~~~~~-~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~-~~g~~Gei  392 (409)
                      +++++++.++|.+.++  +..+++.||+||++...+... ......+++++|+|++|++++|+|++++..+ +.+..|||
T Consensus       371 ~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel  450 (640)
T d1ry2a_         371 EPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVL  450 (640)
T ss_dssp             SCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEE
T ss_pred             ccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEE
Confidence            9999999999999985  356999999999987655422 2334456789999999999999996666655 45567999


Q ss_pred             EEec--CccccccCCCCC
Q 015325          393 SIRG--PTIMKGIFLPHF  408 (409)
Q Consensus       393 ~v~g--~~v~~gY~~~~~  408 (409)
                      +++|  |+++.|||++++
T Consensus       451 ~i~~~~p~~~~gy~~~~e  468 (640)
T d1ry2a_         451 AVKAAWPSFARTIWKNHD  468 (640)
T ss_dssp             EESSCCTTSCCEETTCHH
T ss_pred             EEEecCCCcccccccCHH
Confidence            9998  689999999863

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=6.7e-49  Score=382.67  Aligned_cols=349  Identities=18%  Similarity=0.198  Sum_probs=293.2

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      ..||.++|.++++++    ||++|++++  ++++||+||.++++++|+.|++ +|+++||+|+++++|+.+++++++||+
T Consensus        22 ~~tl~~l~~~~a~~~----Pd~~Al~~~--~~~~Ty~eL~~~v~~lA~~L~~-~Gv~~gd~Vai~~~n~~~~v~~~la~~   94 (514)
T d1amua_          22 DKTIHQLFEEQVSKR----PNNVAIVCE--NEQLTYHELNVKANQLARIFIE-KGIGKDTLVGIMMEKSIDLFIGILAVL   94 (514)
T ss_dssp             TCCHHHHHHHHHHHC----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhC----CCCeEEEEC--CeeEcHHHHHHHHHHHHHHHHH-cCcCCcCEEEEEeCCCHHHHHHHHHHH
Confidence            489999999999999    999999998  8999999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHhhcCCeEEEeCCCcchhhhcccCCcccccccccCCCCEEE
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLAKLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDVAA  196 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  196 (409)
                      ++|++++|+++.++.+++.+++++++++++|++......+.....................    .........++++++
T Consensus        95 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~d~a~  170 (514)
T d1amua_          95 KAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKIRE----GTNLHVPSKSTDLAY  170 (514)
T ss_dssp             HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCCCSEEEECCCSTTTTSC----CSCCCCCCCTTSEEE
T ss_pred             HhCcEEEEeCCCCCHHHHHHHHhccCCcEEEEehhhhhhhhhhcccccccccccccccccc----cccCCCCCCcccceE
Confidence            9999999999999999999999999999999999888877654332221111111111111    122223346788999


Q ss_pred             EEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEecC---CCHHHH
Q 015325          197 IMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQR---FDLKMM  273 (409)
Q Consensus       197 i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~~---~~~~~~  273 (409)
                      |+|||||||.||+|.+||+++........... .....+++++..|++|.+++..++.++..|+++++...   .+....
T Consensus       171 i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  249 (514)
T d1amua_         171 VIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKF  249 (514)
T ss_dssp             EEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHH
T ss_pred             EEEccCCCCCcccccccccccccccccccccc-cccccccccceeccccccccccccccccccccccccccccccchhhh
Confidence            99999999999999999999999999988888 78999999999999999999889999999999998853   567888


Q ss_pred             HHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceecccC
Q 015325          274 LKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVFRTV  353 (409)
Q Consensus       274 ~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~  353 (409)
                      ++.+..+.++.+..+|......      ...++.++|.+++||+++++++.+++.+   ++.+++.||+||++..++...
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~G~~~~~~~~~~~~~---~~~~~~~yG~tE~~~~~~~~~  320 (514)
T d1amua_         250 EQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGSATSPSLVNKWKE---KVTYINAYGPTETTICATTWV  320 (514)
T ss_dssp             HHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEEEEESSCCCHHHHHHHTT---TSEEEEEECCGGGSSCSEEEE
T ss_pred             hhhhhhhhcccccceeeecccc------cccccccccEEEEecccCCHHHhhhhcc---ceeEEEeeccccCceeeeecc
Confidence            9999999999999999765532      3446789999999999999999887765   678999999999998765533


Q ss_pred             CC-CCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCC
Q 015325          354 GP-DECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPH  407 (409)
Q Consensus       354 ~~-~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~  407 (409)
                      .. .......+.|.++++..+.+.| +++++++.|+.|||+|+||++++|||+++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~v~~~d-~~~~~~~~g~~GEl~v~~~~~~~gY~~~~  374 (514)
T d1amua_         321 ATKETIGHSVPIGAPIQNTQIYIVD-ENLQLKSVGEAGELCIGGEGLARGYWKRP  374 (514)
T ss_dssp             CCSSCCCSSCCCBEECTTEEEEEEC-TTSCBCCTTCEEEEEEEETTCCCEETTCH
T ss_pred             ccccccCcccccccceeeeeEeeec-ccceecCCCCeeEEEEccCcccccccccc
Confidence            22 2333456789999999999999 99999999999999999999999999876

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=3.8e-49  Score=386.23  Aligned_cols=360  Identities=22%  Similarity=0.241  Sum_probs=298.3

Q ss_pred             CCCHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHH
Q 015325           37 PISAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLL  116 (409)
Q Consensus        37 ~~~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~  116 (409)
                      +.|+.++|.++++++    ||++|++++  ++++||+||.++++++|+.|++ +|+++||+|+++++|++++++++|||+
T Consensus        24 ~~tl~~~l~~~a~~~----pd~~Al~~~--~~~~Ty~el~~~v~~~A~~L~~-~Gv~~gd~V~i~~~n~~~~~v~~lA~~   96 (536)
T d1mdba_          24 GETFGDLLRDRAAKY----GDRIAITCG--NTHWSYRELDTRADRLAAGFQK-LGIQQKDRVVVQLPNIKEFFEVIFALF   96 (536)
T ss_dssp             SCCHHHHHHHHHHHH----TTSEEEEET--TEEEEHHHHHHHHHHHHHHHHH-HTCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHC----CCCeEEEEC--CEeEcHHHHHHHHHHHHHHHHH-cCcCCcCEEEEEeCCCHHHHHHHHHHH
Confidence            369999999999999    999999998  7899999999999999999999 999999999999999999999999999


Q ss_pred             HhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHh------------hcCCeEEEeCCCcchhhhcccCCcccc
Q 015325          117 SLGVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA------------KLKHRTILIDSPEFDSMTMSWNSKHEL  184 (409)
Q Consensus       117 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (409)
                      ++|++++|+++..+.+++.++++.++++++++++.......            .............+..+......  ..
T Consensus        97 ~~G~i~vpl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  174 (536)
T d1mdba_          97 RLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTE--PV  174 (536)
T ss_dssp             HHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTTSEEGGGCCCC--CC
T ss_pred             HhCcEEEecCCCCCHHHHHHHHHhhccceEeccchhhhhhhhhhhhhhhhccccccceeeeeccccccchhhcccC--Cc
Confidence            99999999999999999999999999999998764321110            11112222222222222211111  22


Q ss_pred             cccccCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCCCCCCCCEEEEeCchhhHHhH--HHHHHHHHhCCeE
Q 015325          185 DRAKVCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSPKRVSPAVMLFTMPYFHIYGL--FFCFRAAALMETA  262 (409)
Q Consensus       185 ~~~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~--~~~~~~l~~G~~~  262 (409)
                      ...+..++|+++|+|||||||.||+|++||+++...+......+ ...+.|++++..|++|.+++  ......+..|.++
T Consensus       175 ~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~g~~~  253 (536)
T d1mdba_         175 KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRV  253 (536)
T ss_dssp             CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEE
T ss_pred             CCCccCccchHHhhhcccccccceeccccccccccccccccccc-ccccccccccccccccccceeeccccccccccccc
Confidence            33456788999999999999999999999999999998888888 79999999999999999987  3445555557777


Q ss_pred             EEecCCCHHHHHHHHHHhcceeEeechHHHHHHHhCCCCCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCc
Q 015325          263 VVMQRFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKGGSTDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGL  342 (409)
Q Consensus       263 v~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~  342 (409)
                      +..+.+++..++..+++++++.+..+|..+..+..........++++|.+++||+++++.+.+++.+.+ +......|+.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~  332 (536)
T d1mdba_         254 VLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTLQQVFGM  332 (536)
T ss_dssp             EECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEEEEEEEC
T ss_pred             cccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhcc-Cceeeecccc
Confidence            777889999999999999999999999999998887766677789999999999999999999999999 8888888888


Q ss_pred             ccccceecccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecCccccccCCCCC
Q 015325          343 TESTAGVFRTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGPTIMKGIFLPHF  408 (409)
Q Consensus       343 tE~~~~~~~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~v~~gY~~~~~  408 (409)
                      +|.+..+... ........+++|.|+++....+++.++|++++.|+.|||+++|+.++.||+++++
T Consensus       333 ~~~~~~~~~~-~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~  397 (536)
T d1mdba_         333 AEGLVNYTRL-DDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEE  397 (536)
T ss_dssp             TTSCEEECCT-TSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHH
T ss_pred             cccccccccc-ccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccc
Confidence            8876655442 2233344578999987665545554999999999999999999999999999753

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=4.6e-43  Score=339.57  Aligned_cols=358  Identities=22%  Similarity=0.256  Sum_probs=287.3

Q ss_pred             CHHHHHhhccCCCCCCCCCCcEEEeCCCCceeeHHHHHHHHHHHHHHhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHh
Q 015325           39 SAVDYVSSLRATLPWRDDDTVALINSVTGLRVSFSEFTRRTNSLASYLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSL  118 (409)
Q Consensus        39 ~~~~~l~~~~~~~~~~~p~~~a~~~~~~~~~~Ty~el~~~~~~la~~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~  118 (409)
                      |+.++|.++++++    ||++|+++.++++++||+||.++++++|++|++ .|+++||+|+++++|++++++++|||+++
T Consensus         3 ti~~~l~~~a~~~----pd~~al~~~~~~~~~Ty~el~~~~~~~a~~L~~-~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~   77 (503)
T d3cw9a1           3 TVNEMLRRAATRA----PDHCALAVPARGLRLTHAELRARVEAVAARLHA-DGLRPQQRVAVVAPNSADVVIAILALHRL   77 (503)
T ss_dssp             CHHHHHHHHHHHS----TTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHH-TTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhC----CCCeEEEECCCCcEEeHHHHHHHHHHHHHHHHH-cCcCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence            7899999999999    999999987667899999999999999999999 99999999999999999999999999999


Q ss_pred             CCeEccCCCCCCHHHHHHHHhhcCCeEEEEcCchHHHHh----hcCCeEEEeCCCcchhhhcccCCcccccccccCCCCE
Q 015325          119 GVIISPANPVNTESEISRQIQLSNPVIAFATSSVVHKLA----KLKHRTILIDSPEFDSMTMSWNSKHELDRAKVCQSDV  194 (409)
Q Consensus       119 G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (409)
                      |++++|+++.++.+++.+++++++++++|++........    ....+++.+.....+  ................++++
T Consensus        78 G~v~vpi~~~~~~~~i~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  155 (503)
T d3cw9a1          78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGSGARIIFLGDLVRD--GEPYSYGPPIEDPQREPAQP  155 (503)
T ss_dssp             TCEEEEECTTSCHHHHHHHHHHTTCSEEEESSCHHHHHHHHHTTCCCEEEEHHHHEET--TEECCCSCCCCCCCCCTTSE
T ss_pred             CcEEEEeCCCCCHHHHHHHHHhcCCcEEEeecchHHHHHHhhhccccccccchhhhhh--hcccccCCccccccchhhhh
Confidence            999999999999999999999999999999876432211    113334433211000  00011111233345678899


Q ss_pred             EEEEcCCCCCCCcchhhhccHHHHHHHHHhhccCC-CCCCCCEEEEeCchhhHHhH-HHHHHHHHhCCeEEEecCCCHHH
Q 015325          195 AAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASSP-KRVSPAVMLFTMPYFHIYGL-FFCFRAAALMETAVVMQRFDLKM  272 (409)
Q Consensus       195 a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~~-~~~~~d~~l~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~~~~~~  272 (409)
                      ++++|||||||.||+|.++|+++...+......+. .....++++..+|++|..+. ...+.+...++.+++.+.+++..
T Consensus       156 a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (503)
T d3cw9a1         156 AFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVD  235 (503)
T ss_dssp             EEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCCCSSTTCEEEECSCTTSHHHHHTTHHHHHHTTCEEEECSSCCHHH
T ss_pred             hhhcccccccccccccccccchhhhhhhhccccccccccccccccccCccccccccccccccccccccccccccccChHH
Confidence            99999999999999999999999988877766542 45677899999999888887 56777888888999999999999


Q ss_pred             HHHHHHHhcceeEeechHHHHHHHhCCC--CCCCCCCCcceeeecCCCCCHHHHHHHHHhCCCCceecccCcccccceec
Q 015325          273 MLKAVEEFRVTHAAVTPPIVVAMSKGGS--TDGYDLSSLETVACGAAPLGKDTIMAFASKFPKVVLVQAYGLTESTAGVF  350 (409)
Q Consensus       273 ~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~l~~Lr~v~~~G~~~~~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~  350 (409)
                      +...+.+++++.+..+|..+..+.....  .....+++||.+++||+++++++...+.+.+ +..+.+.||++|++..+.
T Consensus       236 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~-~~~~~~~yg~~e~~~~~~  314 (503)
T d3cw9a1         236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL-PGEKVNIYGTTEAMNSLY  314 (503)
T ss_dssp             HHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHC-CSEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccc-cccccccccccccceeee
Confidence            9999999999999999998887765422  3455578999999999999999999999999 778999999999987766


Q ss_pred             ccCCCCCCCCCCccccccCCceEEEecCCCCCCCCCCCcceEEEecC-ccccccCCCC
Q 015325          351 RTVGPDECRRWGSTGRLSAGLEAKIVDPETGDSLPPGKEGELSIRGP-TIMKGIFLPH  407 (409)
Q Consensus       351 ~~~~~~~~~~~~s~G~p~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~-~v~~gY~~~~  407 (409)
                      ...  .......+.+.+.+.....+.+ ..++.++.|+.|++.+.+. ....||++++
T Consensus       315 ~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~  369 (503)
T d3cw9a1         315 MRQ--PKTGTEMAPGFFSEVRIVRIGG-GVDEIVANGEEGELIVAASDSAFVGYLNQP  369 (503)
T ss_dssp             EES--CSSSSEEBCCTTCCEEEECTTS-CTTCBCCTTCCEEEEEECCTTSCCCBTTCH
T ss_pred             ecc--ccccccccccccccceeeeeec-ccCcccCCCccccccccccccccccccCCh
Confidence            532  2223333444555555555555 8999999999999988875 4556677654

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=86.43  E-value=1.8  Score=39.04  Aligned_cols=104  Identities=8%  Similarity=-0.084  Sum_probs=77.5

Q ss_pred             cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325          189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ  266 (409)
Q Consensus       189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~  266 (409)
                      ..++.+|++...+|.   .  -.+|...+...+..+...+  .+..++|++....+....+ +..+++++..|+..+.++
T Consensus        23 ~~pd~~av~~~~~g~---~--~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl~   96 (534)
T d1v25a_          23 LFGRKEVVSRLHTGE---V--HRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTAN   96 (534)
T ss_dssp             HSTTCEEEEECTTSC---E--EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred             HcCCCeEEEEecCCc---e--EEEcHHHHHHHHHHHHHHHHHCCcCCCCEEEEEeCCCHHH-HHHHHHHHHhCcEEEecC
Confidence            456788877665542   2  2378888876666655544  1688999998888875442 368899999999998886


Q ss_pred             -CCCHHHHHHHHHHhcceeEeechHHHHHHHhC
Q 015325          267 -RFDLKMMLKAVEEFRVTHAAVTPPIVVAMSKG  298 (409)
Q Consensus       267 -~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~  298 (409)
                       ....+.+...+++.++..+.........+...
T Consensus        97 ~~~~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~  129 (534)
T d1v25a_          97 PRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI  129 (534)
T ss_dssp             TTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHH
T ss_pred             CCCCHHHHHHHHHhhccccccccchhhhhHHHH
Confidence             47889999999999999999888776665543

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=82.79  E-value=0.78  Score=41.57  Aligned_cols=102  Identities=7%  Similarity=-0.062  Sum_probs=74.0

Q ss_pred             hhhccHHHHHHHHHhhccCC--CCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec-CCCHHHHHHHHHHhcceeEe
Q 015325          210 VMLTHRNLTAAVASSFASSP--KRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ-RFDLKMMLKAVEEFRVTHAA  286 (409)
Q Consensus       210 v~~s~~~l~~~~~~~~~~~~--~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~l~  286 (409)
                      ..+|++.+...+..++..+.  +..++|++....+-... .+..+++++..|+..+.++ ..+.+.+...+++.+++.++
T Consensus        46 ~~lTy~el~~~~~~lA~~L~~~Gi~~Gd~Vai~~~ns~e-~~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~~~vi  124 (541)
T d1lcia_          46 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQ-FFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF  124 (541)
T ss_dssp             CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCSS-THHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred             eEeeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHH-HHHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccceEEe
Confidence            34788888776666555441  57899998888876532 2367889999999988885 47889999999999999999


Q ss_pred             echHHHHHHHhCCCCCCCCCCCcceeeecC
Q 015325          287 VTPPIVVAMSKGGSTDGYDLSSLETVACGA  316 (409)
Q Consensus       287 ~~p~~l~~l~~~~~~~~~~l~~Lr~v~~~G  316 (409)
                      .....+..+.....    .++.++.+++..
T Consensus       125 ~~~~~~~~~~~~~~----~~~~~~~~~~~~  150 (541)
T d1lcia_         125 VSKKGLQKILNVQK----KLPIIQKIIIMD  150 (541)
T ss_dssp             ECGGGHHHHHHHHH----HCTTCCEEEETT
T ss_pred             eeccccccchhccc----cccccceeeeec
Confidence            99987776654321    234455555543

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=80.98  E-value=3.6  Score=36.22  Aligned_cols=93  Identities=15%  Similarity=0.095  Sum_probs=68.7

Q ss_pred             cCCCCEEEEEcCCCCCCCcchhhhccHHHHHHHHHhhccC--CCCCCCCEEEEeCchhhHHhHHHHHHHHHhCCeEEEec
Q 015325          189 VCQSDVAAIMYSSGTTGRVKGVMLTHRNLTAAVASSFASS--PKRVSPAVMLFTMPYFHIYGLFFCFRAAALMETAVVMQ  266 (409)
Q Consensus       189 ~~~~~~a~i~~TSGTTG~pK~v~~s~~~l~~~~~~~~~~~--~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~v~~~  266 (409)
                      ..++.+|++.-.+|.       .+|.+.+...+..+...+  .+..++|++...++-... .+..+++++..|+..+.++
T Consensus        14 ~~pd~~al~~~~~~~-------~~Ty~el~~~~~~~a~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~vpi~   85 (503)
T d3cw9a1          14 RAPDHCALAVPARGL-------RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALLN   85 (503)
T ss_dssp             HSTTSEEEEEGGGTE-------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEEC
T ss_pred             hCCCCeEEEECCCCc-------EEeHHHHHHHHHHHHHHHHHcCcCCCCEEEEEeCCCHH-HHHHHHHHHHhCcEEEEeC
Confidence            346778876654442       378888776665555443  157889999888886543 2367899999999999885


Q ss_pred             -CCCHHHHHHHHHHhcceeEeech
Q 015325          267 -RFDLKMMLKAVEEFRVTHAAVTP  289 (409)
Q Consensus       267 -~~~~~~~~~~i~~~~~t~l~~~p  289 (409)
                       ...++.+...+++.++..++...
T Consensus        86 ~~~~~~~i~~~l~~~~~~~~i~~~  109 (503)
T d3cw9a1          86 PRLKSAELAELIKRGEMTAAVIAV  109 (503)
T ss_dssp             TTSCHHHHHHHHHHTTCSEEEESS
T ss_pred             CCCCHHHHHHHHHhcCCcEEEeec
Confidence             47889999999999999887654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.72  E-value=4.2  Score=30.27  Aligned_cols=62  Identities=11%  Similarity=0.020  Sum_probs=42.3

Q ss_pred             HhHhccCCCCCCEEEEEcCCCCchHHHHHHHHHhCCeEccCCCCCCHHHHHHHHhhcCCeEEEEc
Q 015325           85 YLQNVTRLSKNDTAFVLSTNSIEIPILYFSLLSLGVIISPANPVNTESEISRQIQLSNPVIAFAT  149 (409)
Q Consensus        85 ~L~~~~gv~~g~~V~i~~~~~~~~~~~~~A~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ii~~  149 (409)
                      .|.+..++++|++|+|..-.+.--..++..+...|+..+.+..  +++. .+.+++.+++.++..
T Consensus        19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~--~~~~-~~~~~~~Ga~~vi~~   80 (174)
T d1yb5a2          19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAG--TEEG-QKIVLQNGAHEVFNH   80 (174)
T ss_dssp             HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES--SHHH-HHHHHHTTCSEEEET
T ss_pred             HHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccc--cccc-cccccccCccccccc
Confidence            3444357999999999987665555555556778987666553  3333 456677888877754