Citrus Sinensis ID: 015346

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQVSIF
ccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHEHEHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcHHccEEEHHHHHHHHHHHHEEEEEEccHHHHHHcccccccccccccccccEEEEEEEEEEEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHccHHHHHHHHHHHHHcHcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHccHEEEEEEEccccccEEEEEc
mdakypflseYEKEELDRISRTRSSLSEKISFHKqltgelpiahgcsftQTIFNGINVMAGvgllstpytvkeaGWASLVVLLLFAVVCCYTASLMRYCFEskegittypdigeaaFGKYGRLLISVLLYTELYSYCVEFIILegdnltslfpgasldwpgfqldsthLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLgtiegigfhptgqvvkwsgmpfaigIYGFcysghsvfpniyqsmADKTKFTKALITCFALCVLIYGGVAVMGFLMfgqgtlsqitlnmpphafASKVAVWTTVINPFTKYALLMNPLARSIEELlpagisnnyWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILgrkatrtqvsif
mdakypflseyekeeldrISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKIlgrkatrtqvsif
MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASlvvlllfavvCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQVSIF
*******************************FHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKA********
**************************************************TIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQVSIF
MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQVSIF
*******************************************HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQVSIF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
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MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQVSIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query408 2.2.26 [Sep-21-2011]
P47082602 Vacuolar amino acid trans yes no 0.813 0.551 0.309 2e-33
Q6PF45518 Vesicular inhibitory amin N/A no 0.904 0.712 0.254 3e-19
Q6DIV6518 Vesicular inhibitory amin yes no 0.813 0.640 0.269 6e-19
P34579486 Vesicular GABA transporte yes no 0.877 0.736 0.225 3e-16
Q9H598525 Vesicular inhibitory amin yes no 0.784 0.609 0.256 1e-15
O35458525 Vesicular inhibitory amin yes no 0.786 0.611 0.256 3e-15
O35633525 Vesicular inhibitory amin yes no 0.786 0.611 0.256 3e-15
Q95KE2525 Vesicular inhibitory amin N/A no 0.786 0.611 0.256 3e-15
Q4KL91522 Proton-coupled amino acid N/A no 0.862 0.674 0.241 3e-14
Q495N2470 Proton-coupled amino acid no no 0.852 0.740 0.249 1e-13
>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/371 (30%), Positives = 180/371 (48%), Gaps = 39/371 (10%)

Query: 50  QTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITT 108
           QTIFN INV+ G+GLL+ P  +K AGW   L +L +FA+    TA L+  C ++   + +
Sbjct: 212 QTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDTDPTLIS 271

Query: 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTH 168
           Y D+G AAFG  GR LIS L   +L    V  +IL GD+L +LFP            ST 
Sbjct: 272 YADLGYAAFGTKGRALISALFTLDLLGSGVSLVILFGDSLNALFPQY----------STT 321

Query: 169 LFGILTALIVLPTIWLRDLRVISYLSATGVVAT----ILIVLCVLFLGTIEGIGFHPTGQ 224
            F I++  IV P +++  L V+S +S  G+++T    ++I  C L+  +  G   +P  +
Sbjct: 322 FFKIVSFFIVTPPVFI-PLSVLSNISLLGILSTTGTVLVICCCGLYKSSSPGSLVNPM-E 379

Query: 225 VVKW----SGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVA 280
              W      +  +IG+   C+ GH+VFPN+   M    KF   L T + +  +   G A
Sbjct: 380 TSMWPIDLKHLCLSIGLLSACWGGHAVFPNLKTDMRHPDKFKDCLKTTYKITSVTDIGTA 439

Query: 281 VMGFLMFGQGTLSQITLNM------PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEE 334
           V+GFLMFG     +IT N+      P   +    A+ T +  P  K  L   P+   ++ 
Sbjct: 440 VIGFLMFGNLVKDEITKNVLLTEGYPKFVYGLISALMTII--PIAKTPLNARPIVSVLDV 497

Query: 335 LLPAGISNNYWCFILLRTA---LVFSS-------VCAAFLLPFFSLVMALIGSLLSILVA 384
           L+     +     I  R A    VF+        V  A   P F  ++A +G+ L   + 
Sbjct: 498 LMNVQHIDEAASAIKRRAAKGLQVFNRIFINVVFVLIAINFPEFDKIIAFLGAGLCFTIC 557

Query: 385 IIMPSLCFIKI 395
           +I+P   ++++
Sbjct: 558 LILPCWFYLRL 568
Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 Back     alignment and function description
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2 Back     alignment and function description
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1 Back     alignment and function description
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus GN=Slc32a1 PE=1 SV=3 Back     alignment and function description
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis GN=SLC32A1 PE=2 SV=1 Back     alignment and function description
>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1 Back     alignment and function description
>sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
359482241 537 PREDICTED: vacuolar amino acid transport 0.992 0.754 0.770 0.0
449437719 539 PREDICTED: vacuolar amino acid transport 0.995 0.753 0.760 0.0
297827755 534 amino acid transporter family protein [A 0.980 0.749 0.768 1e-178
356498515 531 PREDICTED: vacuolar amino acid transport 0.968 0.743 0.740 1e-177
18405629 536 transmembrane amino acid transporter-lik 0.980 0.746 0.761 1e-177
356537361 548 PREDICTED: vacuolar amino acid transport 0.980 0.729 0.727 1e-176
356570419 546 PREDICTED: vacuolar amino acid transport 0.987 0.738 0.723 1e-175
23397299407 unknown protein [Arabidopsis thaliana] 0.919 0.921 0.792 1e-172
356495667 534 PREDICTED: vacuolar amino acid transport 0.980 0.749 0.714 1e-170
357137363 536 PREDICTED: vacuolar amino acid transport 0.982 0.748 0.694 1e-162
>gi|359482241|ref|XP_002266914.2| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  671 bits (1731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/409 (77%), Positives = 368/409 (89%), Gaps = 4/409 (0%)

Query: 1   MDAKYPFLSE----YEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGI 56
           +D K P L+E    Y+KE+ DRISRT+ SLSEK SFH+QLTGELPI++GCSFTQT+FNG+
Sbjct: 100 LDGKTPLLTEQEKNYQKEDTDRISRTQLSLSEKASFHEQLTGELPISYGCSFTQTVFNGV 159

Query: 57  NVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116
           NV+AG+GLLSTPY VKEAGWASL VL+LFAVVCCYTASL+RYC ESKEGI TYPDIGEAA
Sbjct: 160 NVLAGIGLLSTPYAVKEAGWASLAVLVLFAVVCCYTASLLRYCLESKEGIITYPDIGEAA 219

Query: 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTAL 176
           FG+YGRL +S +LYTELYSYCVEFIILEGDNLT LFPGASL+W GFQLDS HLFGILTAL
Sbjct: 220 FGRYGRLFVSFVLYTELYSYCVEFIILEGDNLTRLFPGASLNWGGFQLDSLHLFGILTAL 279

Query: 177 IVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIG 236
           IVLPT+WLRDLRVIS LSA GV+AT+LIV+ V+F+G   GIGFH TG++V W G+PF+IG
Sbjct: 280 IVLPTVWLRDLRVISCLSAGGVLATVLIVVSVIFVGITAGIGFHQTGKLVNWGGIPFSIG 339

Query: 237 IYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQIT 296
           +YGFC+SGH+VFPNIYQSMADKTKF+KALI    LCV+IYGG+A++GFLMFGQGT+SQIT
Sbjct: 340 VYGFCFSGHTVFPNIYQSMADKTKFSKALIVSILLCVIIYGGIAIVGFLMFGQGTMSQIT 399

Query: 297 LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVF 356
           LN+P H FASK+A+WTTVINPFTKYALLMNPLARSIEELLP  ISN++WCFILLRTALV 
Sbjct: 400 LNIPRHVFASKIALWTTVINPFTKYALLMNPLARSIEELLPVRISNSFWCFILLRTALVI 459

Query: 357 SSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQV 405
           SSVC AFLLPFF LVM+LIGSLLS+LV++I+P+LC+++I+G KAT+ QV
Sbjct: 460 SSVCVAFLLPFFGLVMSLIGSLLSVLVSVIIPTLCYLRIMGNKATKAQV 508

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449437719|ref|XP_004136638.1| PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297827755|ref|XP_002881760.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297327599|gb|EFH58019.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356498515|ref|XP_003518096.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|18405629|ref|NP_030664.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gi|14532708|gb|AAK64155.1| unknown protein [Arabidopsis thaliana] gi|19310729|gb|AAL85095.1| unknown protein [Arabidopsis thaliana] gi|20197120|gb|AAD11993.2| expressed protein [Arabidopsis thaliana] gi|330254848|gb|AEC09942.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356537361|ref|XP_003537196.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356570419|ref|XP_003553385.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|23397299|gb|AAN31931.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356495667|ref|XP_003516696.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357137363|ref|XP_003570270.1| PREDICTED: vacuolar amino acid transporter 1-like isoform 1 [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
TAIR|locus:2063255536 AT2G41190 [Arabidopsis thalian 0.980 0.746 0.743 1.6e-159
TAIR|locus:2056118550 AT2G39130 [Arabidopsis thalian 0.958 0.710 0.510 9.7e-112
TAIR|locus:2185158550 AT5G02180 [Arabidopsis thalian 0.901 0.669 0.520 4.7e-103
TAIR|locus:2185143526 AT5G02170 [Arabidopsis thalian 0.965 0.749 0.483 3.4e-100
TAIR|locus:2082652546 AT3G54830 "AT3G54830" [Arabido 0.919 0.686 0.488 1e-98
TAIR|locus:2083549528 AT3G09340 "AT3G09340" [Arabido 0.968 0.748 0.450 3.4e-93
TAIR|locus:2083529524 AT3G09330 "AT3G09330" [Arabido 0.968 0.753 0.453 1.5e-92
TAIR|locus:2087012405 AT3G28960 "AT3G28960" [Arabido 0.860 0.866 0.430 1.4e-85
TAIR|locus:2150911423 AT5G15240 [Arabidopsis thalian 0.909 0.877 0.397 5.4e-79
TAIR|locus:2149045426 AT5G16740 [Arabidopsis thalian 0.882 0.845 0.345 3.2e-58
TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1554 (552.1 bits), Expect = 1.6e-159, P = 1.6e-159
 Identities = 302/406 (74%), Positives = 341/406 (83%)

Query:     1 MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIA-HGCSFTQTIFNGINVM 59
             +++K P L E   ++ D+ S T+S+ S K SF +    ELPI  +GCS  QTIFN INVM
Sbjct:   106 VESKAPLLPE-RHDDSDKASATQSAWSHKGSFAE----ELPIGGYGCSVIQTIFNAINVM 160

Query:    60 AGVGLLSTPYTVKEAGWASXXXXXXXXXXCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119
             AGVGLLSTPYTVKEAGWAS          CCYTA+LM+ CFE+K GI TYPDIGEAAFGK
Sbjct:   161 AGVGLLSTPYTVKEAGWASMVILLLFAVICCYTATLMKDCFENKTGIITYPDIGEAAFGK 220

Query:   120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVL 179
             YGR+LI +LLYTELYSYCVEFIILEGDNLT LFPG SLD  GF+LDS HLFGILTALIVL
Sbjct:   221 YGRILICMLLYTELYSYCVEFIILEGDNLTGLFPGTSLDLLGFRLDSKHLFGILTALIVL 280

Query:   180 PTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYG 239
             PT+WL+DLR+ISYLSA GV+AT LI + V FLGT  GIGFH TGQ VKW+G+PFAIGIYG
Sbjct:   281 PTVWLKDLRIISYLSAGGVIATALIAVSVFFLGTTGGIGFHHTGQAVKWNGIPFAIGIYG 340

Query:   240 FCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNM 299
             FCYSGHSVFPNIYQSMADKTKF KA+ITCF +CVL+YGGVA+MG+LMFG+ TLSQITLNM
Sbjct:   341 FCYSGHSVFPNIYQSMADKTKFNKAVITCFIICVLLYGGVAIMGYLMFGEATLSQITLNM 400

Query:   300 PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSV 359
             P   F SKVA WTTV++PFTKYALLMNPLARSIEELLP  +S N WCF+LLRTALV SSV
Sbjct:   401 PQDQFFSKVAQWTTVVSPFTKYALLMNPLARSIEELLPERMSENIWCFLLLRTALVASSV 460

Query:   360 CAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKATRTQV 405
             C+AFL+PFF L+MALIGSLLSILVAIIMP+LCFIKI+G KATRTQ+
Sbjct:   461 CSAFLIPFFGLMMALIGSLLSILVAIIMPALCFIKIMGNKATRTQM 506
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 3e-49
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-20
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 7e-09
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 2e-06
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 9e-05
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 6e-04
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  171 bits (436), Expect = 3e-49
 Identities = 99/381 (25%), Positives = 176/381 (46%), Gaps = 24/381 (6%)

Query: 44  HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGW-ASLVVLLLFAVVCCYTASLMRYC--- 99
              S  Q +FN I  + G G+LS PY  K+ GW   L++L++  ++  YT  L+  C   
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 100 --FESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASL 157
                 +   +Y D+G   FG  G+LLI   +   L+  C+ ++I  GDNL ++F     
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 158 DWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTI--- 214
                 +   + F I+  LI +P  ++ +L  +S LS    V+++ IV+ VL +  +   
Sbjct: 121 TCH---ISLVY-FIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVL 176

Query: 215 --EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSM---ADKTKFTKALITCF 269
             +G+G       +K + +  AIGI  F + GH+V   I  +M   +     TK L+T  
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAI 236

Query: 270 ALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLA 329
            +  ++Y  V ++G+L FG      I LN+P   +   +A    V++    Y L   P+ 
Sbjct: 237 IIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIR 296

Query: 330 RSIEELLPAGISNNY------WCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILV 383
           + +E LL    ++           +++R+ LV  +   A  +PF    ++L+G+     +
Sbjct: 297 QIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPL 356

Query: 384 AIIMPSLCFIKILGRKATRTQ 404
             I+P L  +K+   K    +
Sbjct: 357 TFILPPLFHLKLKKTKKKSLE 377

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
PRK10483414 tryptophan permease; Provisional 99.95
PRK09664415 tryptophan permease TnaB; Provisional 99.94
PRK15132403 tyrosine transporter TyrP; Provisional 99.94
PRK13629443 threonine/serine transporter TdcC; Provisional 99.9
TIGR00814397 stp serine transporter. The HAAAP family includes 99.89
PRK10249458 phenylalanine transporter; Provisional 99.8
PRK10655438 potE putrescine transporter; Provisional 99.79
PRK15049499 L-asparagine permease; Provisional 99.78
PRK10746461 putative transport protein YifK; Provisional 99.78
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.77
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.77
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.76
PRK10644445 arginine:agmatin antiporter; Provisional 99.76
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.76
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.76
TIGR00909429 2A0306 amino acid transporter. 99.76
PRK11387471 S-methylmethionine transporter; Provisional 99.75
PRK11021410 putative transporter; Provisional 99.75
PRK10580457 proY putative proline-specific permease; Provision 99.74
PRK10238456 aromatic amino acid transporter; Provisional 99.74
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.74
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.74
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.73
PRK10836 489 lysine transporter; Provisional 99.72
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.72
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.7
TIGR00930 953 2a30 K-Cl cotransporter. 99.69
TIGR00911501 2A0308 L-type amino acid transporter. 99.69
TIGR00913 478 2A0310 amino acid permease (yeast). 99.67
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.67
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.65
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.61
COG0531466 PotE Amino acid transporters [Amino acid transport 99.55
PF03845320 Spore_permease: Spore germination protein; InterPr 99.49
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.49
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.48
PRK15238 496 inner membrane transporter YjeM; Provisional 99.47
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.47
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.45
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.43
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.35
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.22
COG3949349 Uncharacterized membrane protein [Function unknown 99.06
KOG1289 550 consensus Amino acid transporters [Amino acid tran 99.02
KOG3832319 consensus Predicted amino acid transporter [Genera 99.01
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.84
COG1457442 CodB Purine-cytosine permease and related proteins 98.77
PRK11375484 allantoin permease; Provisional 98.65
TIGR00813407 sss transporter, SSS family. have different number 98.59
PRK12488 549 acetate permease; Provisional 98.56
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.52
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.51
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.51
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.44
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.43
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 98.36
PRK09395 551 actP acetate permease; Provisional 98.3
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.29
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.21
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.15
PRK11017404 codB cytosine permease; Provisional 98.15
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.07
PRK15419 502 proline:sodium symporter PutP; Provisional 98.03
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.02
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 98.01
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.89
PRK10484 523 putative transporter; Provisional 97.76
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.64
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.43
COG1966 575 CstA Carbon starvation protein, predicted membrane 97.27
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 97.17
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.12
PRK15015 701 carbon starvation protein A; Provisional 97.08
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.04
PF01566358 Nramp: Natural resistance-associated macrophage pr 96.57
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.1
PRK00701439 manganese transport protein MntH; Reviewed 96.02
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 96.01
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 95.46
COG4147 529 DhlC Predicted symporter [General function predict 94.78
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.61
KOG3659 629 consensus Sodium-neurotransmitter symporter [Signa 94.25
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.24
PHA02764399 hypothetical protein; Provisional 94.01
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 93.99
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 92.92
KOG2466 572 consensus Uridine permease/thiamine transporter/al 91.42
KOG1289550 consensus Amino acid transporters [Amino acid tran 90.56
PRK09928 679 choline transport protein BetT; Provisional 90.18
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 89.83
PRK15433439 branched-chain amino acid transport system 2 carri 88.18
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 86.33
KOG3660 629 consensus Sodium-neurotransmitter symporter [Signa 82.03
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.6e-53  Score=392.37  Aligned_cols=353  Identities=23%  Similarity=0.353  Sum_probs=314.5

Q ss_pred             CCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh-----hCCCCCChHHHHHHh
Q 015346           43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE-----SKEGITTYPDIGEAA  116 (408)
Q Consensus        43 ~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~-g~~~l~~~~~~~~~~~~~l~~~~~-----~~~~~~~y~~l~~~~  116 (408)
                      ++..|..++..|+.++++|+|+|++|+||+++|++ |.+...+++.++.|+++.+++|..     +.....+|++.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            34589999999999999999999999999999999 999999999999999999999873     233456787777665


Q ss_pred             c----------cccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccC
Q 015346          117 F----------GKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD  186 (408)
Q Consensus       117 ~----------G~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~  186 (408)
                      +          |+++|.+++..+++.++|.|++|+++++++++++++....    .+ .+...++.+.....+++++.|+
T Consensus       124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~----~~-~s~~~~i~~~~~~~lll~~Ir~  198 (449)
T KOG1304|consen  124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSP----GV-LSVRLYILIQLPPLLLLNLIRN  198 (449)
T ss_pred             HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCC----CC-ccHHHHHHHHHHHHHHHHHHHh
Confidence            5          7889999999999999999999999999999999983221    11 2345677788888999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHhhhheeccccccccCCCCccccccchhhhHHHHhhhcccceehhhHHhhccchhhHH---H
Q 015346          187 LRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFT---K  263 (408)
Q Consensus       187 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~  263 (408)
                      +|.+..+|.++.+..+...++++++...+.++.++.+...++.++...+|+.+|||+|+.++.|++++||+|++++   +
T Consensus       199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g  278 (449)
T KOG1304|consen  199 LKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG  278 (449)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence            9999999999999887777777766666655666666667788999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhHcCCC--CC
Q 015346          264 ALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG--IS  341 (408)
Q Consensus       264 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~  341 (408)
                      ++..++.+++++|+.+|++||+.||+++++.++.|+|+ ++.....++++++.++++||++++|..+.+++.+.++  +.
T Consensus       279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~  357 (449)
T KOG1304|consen  279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN  357 (449)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc
Confidence            99999999999999999999999999999999999998 6877788999999999999999999999999876654  33


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCCC
Q 015346          342 NNYWCFILLRTALVFSSVCAAFLLPFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKAT  401 (408)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~la~~~p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~~  401 (408)
                      ++++....+|..++++++++|.++|+++.+++++||++++.+++++|++++++.++++..
T Consensus       358 ~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~  417 (449)
T KOG1304|consen  358 RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGK  417 (449)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhccccc
Confidence            467789999999999999999999999999999999999999999999999999998875

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 40.6 bits (94), Expect = 8e-04
 Identities = 60/405 (14%), Positives = 112/405 (27%), Gaps = 155/405 (38%)

Query: 1   MDAKYPFLSE---------------YEKEELDRISR----------TRSSLSEKISFH-K 34
           +   Y FL                 Y  E+ DR+            +R     K+     
Sbjct: 87  LRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 35  QLTGELPIA-HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVC---- 89
           +L     +   G             + G G        K   W +L V L + V C    
Sbjct: 146 ELRPAKNVLIDG-------------VLGSG--------KT--WVALDVCLSYKVQCKMDF 182

Query: 90  ---------CYTAS-----LMRYCFESKEGITTYPDIGEAAFGKY--GRLLISVLLYTEL 133
                    C +       L +  ++     T+  D       +    +  +  LL ++ 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 134 YSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHL--FGILTALIVLPTIWLRDLRVIS 191
           Y  C+  ++L   N+                ++     F + +  I+L T   R  +V  
Sbjct: 243 YENCL--LVL--LNV----------Q-----NAKAWNAFNL-SCKILLTT---RFKQVTD 279

Query: 192 YLSATGVVATILIVLCVLFLGTIEGIGFHPT---GQVVKW-------------SGMPFAI 235
           +LSA             + L         P      ++K+             +  P  +
Sbjct: 280 FLSAATT--------THISLDHHSM-TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 236 GIYG-FCYSGHSVFPNIYQSMADKTKFTKALITCFALCVL-------IYGGVAVMGFLMF 287
            I       G + + N      D  K T  + +     VL       ++  ++V     F
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCD--KLTTIIESSLN--VLEPAEYRKMFDRLSV-----F 381

Query: 288 GQGTLSQITLNMPPHAFASKVAVWT--------TVINPFTKYALL 324
                     ++P    +    +W          V+N   KY+L+
Sbjct: 382 PPSA------HIPTILLSL---IWFDVIKSDVMVVVNKLHKYSLV 417

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.85
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.76
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.62
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 99.02
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.45
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.86
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.79
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.85  E-value=1.8e-18  Score=168.80  Aligned_cols=347  Identities=10%  Similarity=0.051  Sum_probs=217.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhccccchhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccccc
Q 015346           42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG  121 (408)
Q Consensus        42 ~~~~~s~~~~~~~l~~~~iG~Gil~LP~a~~~~G~~g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~  121 (408)
                      .+|+.|.++.+...+++++|+|++.+|....+.|..+++.+++.++........+.+...+.|...+..+..++.+||+.
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~   85 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFL   85 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChH
Confidence            35679999999999999999999999988888887678888888888888999999998888888899999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHH
Q 015346          122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT  201 (408)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~  201 (408)
                      +++..+..++........+....++++..+++....       +-......+..++++-....++.+..++++.+.....
T Consensus        86 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~  158 (445)
T 3l1l_A           86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD-------PWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA  158 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGS-------HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccc-------cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            999999998888777777888888888776653210       0011112222223333344557777777776555544


Q ss_pred             HHHHhhhheecccc-ccc-cCC---CCccccccchhhhHHHHhhhcccceehhhHHhhccchh-hHHHHHHHHHHHHHHH
Q 015346          202 ILIVLCVLFLGTIE-GIG-FHP---TGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLI  275 (408)
Q Consensus       202 ~~~~~~~~~~~~~~-~~~-~~~---~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~~~~  275 (408)
                      +...+.++..+... +.+ ...   +....++.++..++....|+|.|++.+....+|+|||+ +.+|++..+..++.++
T Consensus       159 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~  238 (445)
T 3l1l_A          159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC  238 (445)
T ss_dssp             HHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Confidence            43333222222111 111 101   11112355788899999999999999999999999996 7999999999999999


Q ss_pred             HHHHHHHHHHHhcCCchhh-------hhcCCCCchHHHHHHHHHHHHhhhhhhhhhhhhhHHHH-----HhHcCCC----
Q 015346          276 YGGVAVMGFLMFGQGTLSQ-------ITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSI-----EELLPAG----  339 (408)
Q Consensus       276 Y~~~g~~gy~~fg~~~~~~-------il~~~~~~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~-----~~~~~~~----  339 (408)
                      |++..+......+.+...+       +.+... .++...+..+...+..+.+.........+..     ++.+|+.    
T Consensus       239 y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~  317 (445)
T 3l1l_A          239 YVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARV  317 (445)
T ss_dssp             HHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCC
T ss_pred             HHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhc
Confidence            9999888777766432111       111110 1122233333344444444333333333322     2334422    


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHH--c----CchhHHHHHHhHHHHHHHHHHhhHHHHHHHhCCCC
Q 015346          340 ISNNYWCFILLRTALVFSSVCAAFL--L----PFFSLVMALIGSLLSILVAIIMPSLCFIKILGRKA  400 (408)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~la~~--~----p~~~~~~~l~Ga~~~~~~~~ilP~l~~~~~~~~~~  400 (408)
                      ++++...+-..-  ..++..++.+.  .    ..++.+.++.+  .+..+.|.++++.+++.|++++
T Consensus       318 ~~~~~P~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          318 NKAGTPVAGLII--VGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             CTTCCCHHHHHH--HHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence            111111111111  11112222222  1    24566666643  4677899999999999988776
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 97.77
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.77  E-value=0.017  Score=54.23  Aligned_cols=103  Identities=17%  Similarity=0.130  Sum_probs=67.8

Q ss_pred             CCHHHHHHHHHHHhhcccc-chhHHHHHhh-cHH----HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhccc
Q 015346           46 CSFTQTIFNGINVMAGVGL-LSTPYTVKEA-GWA----SLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGK  119 (408)
Q Consensus        46 ~s~~~~~~~l~~~~iG~Gi-l~LP~a~~~~-G~~----g~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~  119 (408)
                      .|..+-++..++..+|-|= .=.|+-..+- |..    -.++++++++=..+.=..+.|..+ +.+...+..+.....+.
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~-~g~i~~~~~i~~~~~~~   83 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGG-AQGHGTTPAIFYLLWRN   83 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTTCCSHHHHHHHHSCS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCcccHHHHHHHHhccC
Confidence            5888999999999999975 4499887554 432    344444555555555556666644 67778888888777765


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 015346          120 YGRLLISVLLYTELYSYCVEFIILEGDNLT  149 (408)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~  149 (408)
                      +....+.+......+..++.|.+..+..+.
T Consensus        84 ~~~~giG~~~~~~~~~i~~yy~vi~~w~l~  113 (509)
T d2a65a1          84 RFAKILGVFGLWIPLVVAIYYVYIESWTLG  113 (509)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            433345555555666666667766665543