Citrus Sinensis ID: 015347

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MATTSLLPKSTSPFLSNPLSSLPSTHFIKPSPLFNPPDNHSLLITTKRLSFQTHAKKKNPWLDPFDDGEDPDMQYGSLFADGKQDEDPRPPDDPNNPYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLQIQQPYNLQTRVKSPALHCSALS
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHccccEEEcccccccccccccccccEEccccccHHHHHHHHHHHHHHHccccccccccccccccEEcccHHHHHHHHHHHHHcccccccEEEEccccccHHHHccccccccccccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHccccccccccHHHHHHHHcccEEEEcccHHHHHcccc
cccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccEcccccccccHcccccccHccccEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHccccEEEEEcccccccccccEEccccccccccccHHHHHHHHHHHHHHccccccccccccccccEEcccHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHccccccccccHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHccccEEEEEcccccHHHcccccccccccccHHHHHcc
mattsllpkstspflsnplsslpsthfikpsplfnppdnhslliTTKRLSFQThakkknpwldpfddgedpdmqygslfadgkqdedprppddpnnpygflkfpmgfnpeiaslplkirgdvrrccciisggvyenllffPAIQllkdrypgvLIDVIASARGKQTFELNKNVRwanvydldddwpepaeytDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDrvsyiypnvnaagAGLLLSETFTAESMNLSERGYNMYEQMVDWlgrpfrsvprhpvpplrVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIesdskasmqsrgdtdsllpIQVWAEIANGlrefrplfviphekeregvedvvgddasivfittpgqlqiqqpynlqtrvkspalhcsals
mattsllpkstspflsnplsSLPSTHFIKPSPLFNPPDNHSLLITTKRLSfqthakkknpwldpfddGEDPDMQYGSLFADGKQDEDPRPPDDPNNPYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASargkqtfelnknvrwanvydldddwpepAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKyknagaeqgkyIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITtpgqlqiqqpynlqtrvkspalhcsals
MATTSLLPKstspflsnplsslpsTHFIKPSPLFNPPDNHSLLITTKRLSFQTHAKKKNPWLDPFDDGEDPDMQYGSLFADGKQdedprppddpnnpYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLQIQQPYNLQTRVKSPALHCSALS
******************************************LITT***************************************************YGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGI****************LLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLQIQQPYNL***************
********KSTSPFLSNPLS***************************************PWLDPFDDGEDPDMQY*************************LKFPMGFNPEIASL**KIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLQIQQPYNLQTRVKSPALHCSALS
************PFLSNPLSSLPSTHFIKPSPLFNPPDNHSLLITTKRLSFQTHAKKKNPWLDPFDDGEDPDMQYGSLFADG********PDDPNNPYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESD***********DSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLQIQQPYNLQTRVKSPALHCSALS
*******PKSTSPFLSNPLSSLPSTHFIKPSPLFNPPDNHSLLITTKRLSFQTHAKKKNPWLDPFDDGEDPDMQYGSLFADGKQDEDPRPPDDPNNPYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLQIQQPYNLQTRVKSPALHCSALS
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATTSLLPKSTSPFLSNPLSSLPSTHFIKPSPLFNPPDNHSLLITTKRLSFQTHAKKKNPWLDPFDDGEDPDMQYGSLFADGKQDEDPRPPDDPNNPYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQLQIQQPYNLQTRVKSPALHCSALS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
255543315466 conserved hypothetical protein [Ricinus 0.936 0.819 0.798 1e-173
341833960463 hypothetical protein [Pyrus x bretschnei 0.926 0.816 0.746 1e-171
224115860465 predicted protein [Populus trichocarpa] 0.936 0.821 0.724 1e-165
357467927472 hypothetical protein MTR_4g007080 [Medic 0.901 0.779 0.713 1e-164
363808214471 uncharacterized protein LOC100802136 [Gl 0.941 0.815 0.748 1e-161
356523261467 PREDICTED: uncharacterized protein LOC10 0.936 0.817 0.752 1e-161
359483160466 PREDICTED: uncharacterized protein LOC10 0.921 0.806 0.758 1e-159
449436635466 PREDICTED: uncharacterized protein LOC10 0.931 0.815 0.757 1e-156
297844518460 hypothetical protein ARALYDRAFT_471797 [ 0.919 0.815 0.726 1e-156
18394307461 NDH-dependent cyclic electron flow 1 [Ar 0.909 0.804 0.737 1e-155
>gi|255543315|ref|XP_002512720.1| conserved hypothetical protein [Ricinus communis] gi|223547731|gb|EEF49223.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 309/387 (79%), Positives = 342/387 (88%), Gaps = 5/387 (1%)

Query: 1   MATTSLLPKSTSPFLSNPLSSLPSTHFIKPSPLFNP--PDNHSLLITTKRLSFQTHAKKK 58
           MA+TSLLPK T PFL+NP SSL STHF KPS   NP  PD+HS        +   HA KK
Sbjct: 1   MASTSLLPKIT-PFLTNP-SSLSSTHFTKPS-FLNPLSPDHHSACARKPTTTTVLHANKK 57

Query: 59  NPWLDPFDDGEDPDMQYGSLFADGKQDEDPRPPDDPNNPYGFLKFPMGFNPEIASLPLKI 118
           NPWLDPFDDGEDP+M+YGSLFADGKQ+EDPRPPD+PNNPYGFLKFP G++ EIASLPLKI
Sbjct: 58  NPWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPKGYSVEIASLPLKI 117

Query: 119 RGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANV 178
           RGDVRRCCC+ISGGVYENLLFFPAIQL+KDRYPGV IDV+AS RGKQT+ELNKNVRWAN 
Sbjct: 118 RGDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQIDVLASPRGKQTYELNKNVRWAND 177

Query: 179 YDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNA 238
           YD DDDWPEPAEY D+LG++KNRYYDMVLSTKLAGLGHA+FLFMT+ARDRVSYI+PNVNA
Sbjct: 178 YDPDDDWPEPAEYVDMLGILKNRYYDMVLSTKLAGLGHASFLFMTSARDRVSYIHPNVNA 237

Query: 239 AGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVV 298
           AGAGLLLSETFT +  NL+E GY+MY QM+DWLGRPFRSVPRH VPPLRVSISR+LKE V
Sbjct: 238 AGAGLLLSETFTPDITNLAEGGYHMYHQMLDWLGRPFRSVPRHTVPPLRVSISRKLKEFV 297

Query: 299 AEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIP 358
             KY+ AGAE+GKYIVIHGIESDSKASMQSRGDTDSLLP+QVWAEIA  +R F+P+FVIP
Sbjct: 298 EAKYRAAGAEKGKYIVIHGIESDSKASMQSRGDTDSLLPLQVWAEIAKDIRAFKPVFVIP 357

Query: 359 HEKEREGVEDVVGDDASIVFITTPGQL 385
           HEKERE VE++VGDD SIV ITTPGQL
Sbjct: 358 HEKERENVEEIVGDDTSIVMITTPGQL 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|341833960|gb|AEK94315.1| hypothetical protein [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|224115860|ref|XP_002332075.1| predicted protein [Populus trichocarpa] gi|222831961|gb|EEE70438.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357467927|ref|XP_003604248.1| hypothetical protein MTR_4g007080 [Medicago truncatula] gi|355505303|gb|AES86445.1| hypothetical protein MTR_4g007080 [Medicago truncatula] Back     alignment and taxonomy information
>gi|363808214|ref|NP_001242232.1| uncharacterized protein LOC100802136 [Glycine max] gi|255635425|gb|ACU18065.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356523261|ref|XP_003530259.1| PREDICTED: uncharacterized protein LOC100803710 [Glycine max] Back     alignment and taxonomy information
>gi|359483160|ref|XP_002264393.2| PREDICTED: uncharacterized protein LOC100241596 [Vitis vinifera] gi|298204672|emb|CBI25170.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449436635|ref|XP_004136098.1| PREDICTED: uncharacterized protein LOC101205787 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297844518|ref|XP_002890140.1| hypothetical protein ARALYDRAFT_471797 [Arabidopsis lyrata subsp. lyrata] gi|297335982|gb|EFH66399.1| hypothetical protein ARALYDRAFT_471797 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18394307|ref|NP_563986.1| NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana] gi|6587804|gb|AAF18495.1|AC010924_8 ESTs gb|T43280, gb|AA395195 come from this gene [Arabidopsis thaliana] gi|16323198|gb|AAL15333.1| At1g15980/T24D18_8 [Arabidopsis thaliana] gi|21537186|gb|AAM61527.1| unknown [Arabidopsis thaliana] gi|21700921|gb|AAM70584.1| At1g15980/T24D18_8 [Arabidopsis thaliana] gi|332191271|gb|AEE29392.1| NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
TAIR|locus:2200452461 PnsB1 "Photosynthetic NDH subc 0.850 0.752 0.744 2.1e-141
TAIR|locus:2200452 PnsB1 "Photosynthetic NDH subcomplex B 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1383 (491.9 bits), Expect = 2.1e-141, P = 2.1e-141
 Identities = 259/348 (74%), Positives = 293/348 (84%)

Query:    39 NHSLLITTKRLSFQTHAKKKN-PWLDPFDDGEDPDMQYGSLFADGKQXXXXXXXXXXXXX 97
             N    +T++      + KKKN PWLDPFD GEDPD +YGSLFADGKQ             
Sbjct:    31 NFQTRLTSRSSDVSVNLKKKNNPWLDPFDSGEDPDNEYGSLFADGKQDEDPRPPDNPDNP 90

Query:    98 YGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDV 157
             YGFLKFP G+  E+ASLPLKIRGDVRRCCC+ISGGVYENLLFFP IQL+KDRYPGV +D+
Sbjct:    91 YGFLKFPKGYTVELASLPLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKDRYPGVQVDI 150

Query:   158 IASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHA 217
             + + RGKQT+ELNKNVRWANVYD DD WPEPAEYTD++G++K RYYDMVLSTKLAGLGHA
Sbjct:   151 LTTERGKQTYELNKNVRWANVYDPDDHWPEPAEYTDMIGLLKGRYYDMVLSTKLAGLGHA 210

Query:   218 AFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRS 277
             AFLFMTTARDRVSYIYPNVN+AGAGL+LSETFTAE+ NLSE GY+MY QM DWLGRPFRS
Sbjct:   211 AFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSELGYSMYTQMEDWLGRPFRS 270

Query:   278 VPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLP 337
             VPR P+ PLRVSISR++KEVVA KY+NAGA  GK+IVIHGIESDSKASMQS+GD DSLL 
Sbjct:   271 VPRTPLLPLRVSISRKVKEVVAAKYRNAGAVTGKFIVIHGIESDSKASMQSKGDADSLLS 330

Query:   338 IQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQL 385
             ++ WA+I  G+R F+P+FVIPHEKERE VED VGDD SIVFITTPGQL
Sbjct:   331 LEKWAKIIKGVRGFKPVFVIPHEKERENVEDFVGDDTSIVFITTPGQL 378


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      408       380   0.00090  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  247 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.96u 0.09s 29.05t   Elapsed:  00:00:01
  Total cpu time:  28.96u 0.09s 29.05t   Elapsed:  00:00:01
  Start:  Tue May 21 06:45:41 2013   End:  Tue May 21 06:45:42 2013
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IMP
GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=IMP;IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0015979 "photosynthesis" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
COG0859334 COG0859, RfaF, ADP-heptose:LPS heptosyltransferase 2e-10
cd03789279 cd03789, GT1_LPS_heptosyltransferase, Lipopolysacc 7e-05
>gnl|CDD|223928 COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 48/253 (18%), Positives = 88/253 (34%), Gaps = 26/253 (10%)

Query: 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDL 181
           + +   I    + + +L  P ++ LK  YP   IDV+         +LN  +    + D 
Sbjct: 1   MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDK 60

Query: 182 DDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFL-FMTTARDRVSYIYPNVNAAG 240
                   E   +L  ++   YD V+   L GL  +A L  +     R+ +   +     
Sbjct: 61  KKKGLGLKERLALLRTLRKERYDAVID--LQGLLKSALLALLLGIPFRIGFDKKSA---- 114

Query: 241 AGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAE 300
             LLL++ +        +     Y  +++ LG      P+    PL             E
Sbjct: 115 RELLLNKFYPRLDKPEGQHVVERYLALLEDLGLYPPPEPQL-DFPLPRPP--------IE 165

Query: 301 KYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLRE-FRPLFVIPH 359
             KN       YIVI+       +   ++       P++ +AE+A  L      + +   
Sbjct: 166 LAKNLAKFDRPYIVINP----GASRGSAKR-----WPLEHYAELAELLIAKGYQVVLFGG 216

Query: 360 EKEREGVEDVVGD 372
             E E  E++   
Sbjct: 217 PDEEERAEEIAKG 229

Length = 334
>gnl|CDD|99964 cd03789, GT1_LPS_heptosyltransferase, Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
PRK10916348 ADP-heptose:LPS heptosyltransferase II; Provisiona 100.0
PRK10422352 lipopolysaccharide core biosynthesis protein; Prov 100.0
TIGR02201344 heptsyl_trn_III lipopolysaccharide heptosyltransfe 100.0
TIGR02195334 heptsyl_trn_II lipopolysaccharide heptosyltransfer 100.0
PRK10964322 ADP-heptose:LPS heptosyl transferase I; Provisiona 100.0
COG0859334 RfaF ADP-heptose:LPS heptosyltransferase [Cell env 100.0
TIGR02193319 heptsyl_trn_I lipopolysaccharide heptosyltransfera 100.0
cd03789279 GT1_LPS_heptosyltransferase Lipopolysaccharide hep 100.0
PF01075247 Glyco_transf_9: Glycosyltransferase family 9 (hept 99.96
TIGR03568365 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, 98.74
PRK10017 426 colanic acid biosynthesis protein; Provisional 98.36
PRK00025380 lpxB lipid-A-disaccharide synthase; Reviewed 97.86
PRK05749425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 97.22
COG1519419 KdtA 3-deoxy-D-manno-octulosonic-acid transferase 97.08
PF04007335 DUF354: Protein of unknown function (DUF354); Inte 96.79
cd03786363 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th 96.64
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 96.5
cd03807365 GT1_WbnK_like This family is most closely related 96.45
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 96.41
cd03808359 GT1_cap1E_like This family is most closely related 96.0
TIGR03492396 conserved hypothetical protein. This protein famil 95.96
PRK13609380 diacylglycerol glucosyltransferase; Provisional 95.95
cd04951360 GT1_WbdM_like This family is most closely related 95.72
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 95.68
PRK00726357 murG undecaprenyldiphospho-muramoylpentapeptide be 95.52
TIGR03609298 S_layer_CsaB polysaccharide pyruvyl transferase Cs 95.49
PRK13608391 diacylglycerol glucosyltransferase; Provisional 95.49
TIGR00236365 wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras 95.48
PF13528318 Glyco_trans_1_3: Glycosyl transferase family 1 95.32
TIGR03088374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 95.29
COG0707357 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosami 95.27
PF02684373 LpxB: Lipid-A-disaccharide synthetase; InterPro: I 94.85
TIGR03590279 PseG pseudaminic acid biosynthesis-associated prot 94.69
PRK01021 608 lpxB lipid-A-disaccharide synthase; Reviewed 94.59
PF13477139 Glyco_trans_4_2: Glycosyl transferase 4-like 93.49
PLN02871 465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 93.48
COG0763 381 LpxB Lipid A disaccharide synthetase [Cell envelop 92.87
cd03794394 GT1_wbuB_like This family is most closely related 92.8
TIGR00215385 lpxB lipid-A-disaccharide synthase. Lipid-A precur 92.63
cd03820348 GT1_amsD_like This family is most closely related 92.23
PRK10307412 putative glycosyl transferase; Provisional 91.53
cd03812358 GT1_CapH_like This family is most closely related 91.21
cd03823359 GT1_ExpE7_like This family is most closely related 90.97
cd04962371 GT1_like_5 This family is most closely related to 90.77
PLN02605382 monogalactosyldiacylglycerol synthase 90.45
cd03811353 GT1_WabH_like This family is most closely related 90.13
cd03817374 GT1_UGDG_like This family is most closely related 89.93
PF14595129 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. 89.9
cd03801374 GT1_YqgM_like This family is most closely related 89.79
cd03819355 GT1_WavL_like This family is most closely related 89.74
TIGR00661321 MJ1255 conserved hypothetical protein. This model 89.32
cd03799355 GT1_amsK_like This is a family of GT1 glycosyltran 88.97
PRK14089347 ipid-A-disaccharide synthase; Provisional 88.48
PF04230286 PS_pyruv_trans: Polysaccharide pyruvyl transferase 87.65
PRK15490578 Vi polysaccharide biosynthesis protein TviE; Provi 87.14
cd05844367 GT1_like_7 Glycosyltransferases catalyze the trans 85.72
PF04413186 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid 84.69
cd03784401 GT1_Gtf_like This family includes the Gtfs, a grou 81.1
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.9e-47  Score=380.73  Aligned_cols=267  Identities=16%  Similarity=0.077  Sum_probs=208.0

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcCC
Q 015347          123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRY  202 (408)
Q Consensus       123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~~  202 (408)
                      ||||||++++|||+||+||++++||++||+++||||+.+.++++++++|+||+|++++++.....+..+++++++||+++
T Consensus         1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~~~~~~~~~~~~l~~~lr~~~   80 (348)
T PRK10916          1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRRLGHSLREKR   80 (348)
T ss_pred             CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccccchhhhHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999999999999999997643344566788999999999


Q ss_pred             CcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHHHHcCCCCCCCC-CC
Q 015347          203 YDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVP-RH  281 (408)
Q Consensus       203 YDlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~~~~~p-~~  281 (408)
                      ||++||++++ ++++++++++|++.|+||.     +.....++++....+.. ...|.+++|++++..+|....... ..
T Consensus        81 yD~vidl~~~-~~s~~l~~~~~~~~rig~~-----~~~~~~~~~~~~~~~~~-~~~h~~~~~~~l~~~~~~~~~~~~~~~  153 (348)
T PRK10916         81 YDRAYVLPNS-FKSALVPFFAGIPHRTGWR-----GEMRYGLLNDLRVLDKE-AFPLMVERYVALAYDKGVMRTAADLPQ  153 (348)
T ss_pred             CCEEEECCCc-HHHHHHHHHcCCCeEeecc-----cCccccccccccccCcc-cCcHHHHHHHHHhcccccccccccCCC
Confidence            9999999998 9999999999999999997     33333344443221221 125889999999876654211000 01


Q ss_pred             CCCCCccccCHHHHHHHHHHHHhhCCC-CCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CEEEeCC
Q 015347          282 PVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIPH  359 (408)
Q Consensus       282 ~~p~~~i~is~~~~~~a~~~l~~~g~~-~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~vvligg  359 (408)
                      +...+.+.+++++.+.+   ....++. ++++|+||||+++..         .|+||.|+|++||+.|...+ ++|++||
T Consensus       154 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~i~pga~~~~---------~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg  221 (348)
T PRK10916        154 PLLWPQLQVSEGEKSET---CAAFSLSSERPIIGFCPGAEFGP---------AKRWPHYHYAELAQQLIDEGYQVVLFGS  221 (348)
T ss_pred             CcCCCccccCHHHHHHH---HHHcCCCCCCCEEEEeCCCCCcc---------ccCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence            12233555666554433   2233433 568999999998632         48999999999999998665 8999999


Q ss_pred             cchHHHHHHHHhcCC--------CccccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347          360 EKEREGVEDVVGDDA--------SIVFITTPGQLQI-QQPYNLQTRVKSPALHCSALS  408 (408)
Q Consensus       360 p~E~e~~~~I~~~~~--------~~~~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~  408 (408)
                      |+|++.+++|.+...        ++...+++.|+++ |++|+++|||||||||||+|.
T Consensus       222 ~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali~~a~l~I~nDTGp~HlAaA~  279 (348)
T PRK10916        222 AKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILIAACKAIVTNDSGLMHVAAAL  279 (348)
T ss_pred             HHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHHHhCCEEEecCChHHHHHHHh
Confidence            999999999876542        1222456799999 999999999999999999973

>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional Back     alignment and domain information
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative Back     alignment and domain information
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II Back     alignment and domain information
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional Back     alignment and domain information
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I Back     alignment and domain information
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) Back     alignment and domain information
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing Back     alignment and domain information
>PRK10017 colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03492 conserved hypothetical protein Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase Back     alignment and domain information
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1 Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG Back     alignment and domain information
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR00215 lpxB lipid-A-disaccharide synthase Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>PRK14089 ipid-A-disaccharide synthase; Provisional Back     alignment and domain information
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis Back     alignment and domain information
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides Back     alignment and domain information
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
2gt1_A326 Lipopolysaccharide heptosyltransferase-1; GT-B fol 2e-10
3tov_A349 Glycosyl transferase family 9; structural genomics 3e-08
1psw_A348 ADP-heptose LPS heptosyltransferase II; structural 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* Length = 326 Back     alignment and structure
 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 36/266 (13%), Positives = 71/266 (26%), Gaps = 47/266 (17%)

Query: 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNV---------RWANVYDLDDDWPE 187
           L   PA+   +   PG+  D +      Q    +  V         RW   +        
Sbjct: 15  LHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIK-- 72

Query: 188 PAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFL-FMTTARDRVSYIYPNVNAAGAGLLLS 246
            AE       ++ + YD V+     GL  +A L        +    +       A L  +
Sbjct: 73  -AERKAFREALQAKNYDAVID--AQGLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYN 129

Query: 247 ETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAG 306
                       +  +  E+  +   +      +                +      N  
Sbjct: 130 RKHHI------AKQQHAVERTRELFAKSLG-YSKPQTQGDY--------AIAQHFLTNLP 174

Query: 307 AEQGKYIVIHGIES-DSKASMQSRGDTDSLLPIQVWAEIANGLRE--FRPLFVIPHEKER 363
            + G+Y V     + D K             P + W E+   L +   R         E 
Sbjct: 175 TDAGEYAVFLHATTRDDK-----------HWPEEHWRELIGLLADSGIRIKLPWGAPHEE 223

Query: 364 EGVEDVVGDDASIVFITTPGQLQIQQ 389
           E  + +    A +  +    ++ ++ 
Sbjct: 224 ERAKRLAEGFAYVEVL---PKMSLEG 246
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} Length = 349 Back     alignment and structure
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 Length = 348 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
3tov_A349 Glycosyl transferase family 9; structural genomics 100.0
2gt1_A326 Lipopolysaccharide heptosyltransferase-1; GT-B fol 100.0
1psw_A348 ADP-heptose LPS heptosyltransferase II; structural 100.0
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 97.72
3dzc_A396 UDP-N-acetylglucosamine 2-epimerase; structural ge 97.71
3ot5_A403 UDP-N-acetylglucosamine 2-epimerase; structural ge 97.19
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 97.08
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 97.03
1vgv_A384 UDP-N-acetylglucosamine 2-epimerase; structural ge 96.9
1f0k_A364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 96.87
4hwg_A385 UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc 96.83
1v4v_A376 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t 95.86
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 95.41
2gek_A406 Phosphatidylinositol mannosyltransferase (PIMA); G 95.2
3fro_A439 GLGA glycogen synthase; glycosyltransferase family 94.98
3c48_A438 Predicted glycosyltransferases; retaining glycosyl 94.73
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 94.68
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 94.43
3h4t_A 404 Glycosyltransferase GTFA, glycosyltransferase; van 94.43
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 94.36
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 94.16
3oy2_A 413 Glycosyltransferase B736L; rossmann fold, GDP-mann 94.09
3oti_A398 CALG3; calicheamicin, TDP, structural genomics, PS 93.83
2iuy_A342 Avigt4, glycosyltransferase; antibiotics, family G 93.25
2yjn_A441 ERYCIII, glycosyltransferase; transferase, cytochr 93.12
3beo_A375 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a 93.0
2iya_A 424 OLEI, oleandomycin glycosyltransferase; carbohydra 92.26
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 92.21
4amg_A400 Snogd; transferase, polyketide biosynthesis, GT1 f 92.11
2jjm_A394 Glycosyl transferase, group 1 family protein; anth 91.4
2iw1_A374 Lipopolysaccharide core biosynthesis protein RFAG; 91.18
1rrv_A 416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 89.64
3hbm_A282 UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter je 89.49
1iir_A 415 Glycosyltransferase GTFB; rossmann fold; 1.80A {Am 87.82
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 81.06
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} Back     alignment and structure
Probab=100.00  E-value=2.1e-47  Score=381.57  Aligned_cols=265  Identities=15%  Similarity=0.120  Sum_probs=227.0

Q ss_pred             CccEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhc
Q 015347          121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKN  200 (408)
Q Consensus       121 ~~~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~  200 (408)
                      ..||||||+.++|||+|+++|++++||++||+++|+|++.+.++++++++|+||+|+.+|++....++..+++++++||+
T Consensus         7 ~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~l~~~Lr~   86 (349)
T 3tov_A            7 DYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYNPNIDELIVVDKKGRHNSISGLNEVAREINA   86 (349)
T ss_dssp             TTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSCTTCSEEEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcCCCccEEEEeCcccccccHHHHHHHHHHHhh
Confidence            46999999999999999999999999999999999999999999999999999999999976432346677899999999


Q ss_pred             CCC-cEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHHHHcCCCCCCCC
Q 015347          201 RYY-DMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVP  279 (408)
Q Consensus       201 ~~Y-DlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~~~~~p  279 (408)
                      ++| |++||++++ .+++++++++|++.|+||.     ..+..+++++.+.....  ..|.+++|+++++.+|++.    
T Consensus        87 ~~y~D~vidl~~~-~rs~~l~~~~~a~~riG~~-----~~~~~~~~~~~~~~~~~--~~h~v~r~~~ll~~lg~~~----  154 (349)
T 3tov_A           87 KGKTDIVINLHPN-ERTSYLAWKIHAPITTGMS-----HFLFRPFMTKYTRLDRK--TRHAADMYINVLEQLGVTD----  154 (349)
T ss_dssp             HCCCCEEEECCCS-HHHHHHHHHHCCSEEEECC-----CTTTGGGCSEECCCCTT--TSCHHHHHHHHHHHTTCCC----
T ss_pred             CCCCeEEEECCCC-hHHHHHHHHhCCCeEEecC-----CCCccccccccccCCCC--CccHHHHHHHHHHHhCCCc----
Confidence            999 999999999 8999999999999999998     44555788887764322  2689999999999999841    


Q ss_pred             CCCCCCCccccCHHHHHHHHHHHHhhCCC-CCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CEEEe
Q 015347          280 RHPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVI  357 (408)
Q Consensus       280 ~~~~p~~~i~is~~~~~~a~~~l~~~g~~-~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~vvli  357 (408)
                       .....+.+.+++++++.+++++.+.|+. ++++|+||||+++..          |+||.|+|++|++.|.+++ +++++
T Consensus       155 -~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~~~~i~i~pga~~~~----------k~wp~~~~~~l~~~l~~~g~~vvl~  223 (349)
T 3tov_A          155 -TSNSGLHIEICEEWRCQAQEFYSSHGLTDTDILIGFNIGSAVPE----------KRWPAERFAHVADYFGRLGYKTVFF  223 (349)
T ss_dssp             -CCCCCCCCCCCHHHHHHHHHHHHHTTCCTTCCEEEEECCCSSGG----------GCCCHHHHHHHHHHHHHHTCEEEEC
T ss_pred             -cCCCceeeeCCHHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCcc----------CCCCHHHHHHHHHHHHhCCCeEEEE
Confidence             1223456778888888888888888876 468999999998865          8899999999999998776 78899


Q ss_pred             CCcchHHHHHHHHhcCCC-c---cccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347          358 PHEKEREGVEDVVGDDAS-I---VFITTPGQLQI-QQPYNLQTRVKSPALHCSALS  408 (408)
Q Consensus       358 ggp~E~e~~~~I~~~~~~-~---~~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~  408 (408)
                      |+++|++.+++|.+.... .   ...+++.|+++ |++||++||||||+||||+|.
T Consensus       224 g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~~i~~DsG~~HlAaa~  279 (349)
T 3tov_A          224 GGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNLLITNDSGPMHVGISQ  279 (349)
T ss_dssp             CCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSEEEEESSHHHHHHHTT
T ss_pred             eCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCEEEECCCCHHHHHHhc
Confidence            999999999999875532 1   12356799999 999999999999999999874
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* Back     alignment and structure
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} Back     alignment and structure
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} Back     alignment and structure
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A* Back     alignment and structure
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 408
d1pswa_348 c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase 7e-05
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: ADP-heptose LPS heptosyltransferase II
domain: ADP-heptose LPS heptosyltransferase II
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 16/70 (22%), Positives = 27/70 (38%)

Query: 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILG 196
           ++     + L+ RYP  +IDV+A A  +        V  A    L     E  E   +  
Sbjct: 15  MMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGH 74

Query: 197 VMKNRYYDMV 206
            ++ + YD  
Sbjct: 75  SLREKRYDRA 84

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
d1pswa_348 ADP-heptose LPS heptosyltransferase II {Escherichi 100.0
d1f6da_376 UDP-N-acetylglucosamine 2-epimerase {Escherichia c 94.52
d1o6ca_377 UDP-N-acetylglucosamine 2-epimerase {Bacillus subt 92.82
d1v4va_373 UDP-N-acetylglucosamine 2-epimerase {Thermus therm 85.13
d1f0ka_351 Peptidoglycan biosynthesis glycosyltransferase Mur 83.77
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: ADP-heptose LPS heptosyltransferase II
domain: ADP-heptose LPS heptosyltransferase II
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-40  Score=324.24  Aligned_cols=266  Identities=16%  Similarity=0.089  Sum_probs=203.6

Q ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHHCCCcEEEEEECCCchHhhhcCCCCcEEEEecCCCCCCChHHHHHHHHHhhcCC
Q 015347          123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRY  202 (408)
Q Consensus       123 ~rILIIr~~~IGDvILttPvI~aLK~~yP~A~IdvLv~~~~~~lle~~P~Vd~Vi~~d~k~~~~~~~~~~~l~~~LR~~~  202 (408)
                      ||||||++++|||+|+++|++++||++||+++|+|+|.++++++++.+|+||+|+.++.+.....+..++++++.||+++
T Consensus         1 MkILii~~~~iGD~il~~p~i~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~l~~~l~~~~   80 (348)
T d1pswa_           1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKR   80 (348)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTCTTEEEEEEC-------CHHHHHHHHHHTTTTT
T ss_pred             CeEEEEcCCChHHHHHHHHHHHHHHHHCCCCEEEEEEChhHHHHHhhCCCcCEEEEecCccccchhhhhhhHHHHhhhcc
Confidence            89999999999999999999999999999999999999999999999999999999987765467788899999999999


Q ss_pred             CcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCcccccccccceeeeccCcCCcchhHHHHHHHHHHHcCCCCC--CCCC
Q 015347          203 YDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFR--SVPR  280 (408)
Q Consensus       203 YDlvIdl~~~~~~sall~~laga~~RIG~~~~~~~~~~~~~~lt~~v~~~~~~~~~h~~~~y~~lL~~LGi~~~--~~p~  280 (408)
                      ||++|+++.+ +++++++++++++.|+|+.     .....++++........ ...|..++|+.+...++....  ..+ 
T Consensus        81 ~D~~i~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (348)
T d1pswa_          81 YDRAYVLPNS-FKSALVPLFAGIPHRTGWR-----GEMRYGLLNDVRVLDKE-AWPLMVERYIALAYDKGIMRTAQDLP-  152 (348)
T ss_dssp             CSEEEECSCC-SGGGHHHHHTTCSEEEEEC-----TTTCTTTCTEEECCCTT-TCCSHHHHHHHTTSCGGGCSSGGGSC-
T ss_pred             cceEeecccc-cchhhHHHhhccccccccc-----ccccccccccccccccc-cchhHHHHHHHHHHhhhccccccccc-
Confidence            9999999988 9999999999999999997     33333343333322221 125677788877665554211  111 


Q ss_pred             CCCCCCccccCHHHHHHHHHHHHhhCCC-CCCeEEEEcCCCCchhhccCCCCCCCCCCHHHHHHHHHHHhhCC-CEEEeC
Q 015347          281 HPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIP  358 (408)
Q Consensus       281 ~~~p~~~i~is~~~~~~a~~~l~~~g~~-~~~~Ivihpgas~~~~~~~~~g~~~K~WP~e~waeLa~~L~~~~-~vvlig  358 (408)
                      .....+...++++++.....   +.+.. .+++|++++|++...         .|+||.++|++|++.|.+++ .++++|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~---------~k~wp~~~~~~L~~~l~~~~~~ivl~g  220 (348)
T d1pswa_         153 QPLLWPQLQVSEGEKSYTCN---QFSLSSERPMIGFCPGAEFGP---------AKRWPHYHYAELAKQLIDEGYQVVLFG  220 (348)
T ss_dssp             SSCCCCCCCCCHHHHHHHHH---HTTCCSSSCEEEEECCCTTCG---------GGSCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             cccccccccCCHHHHHHHHH---HhccccCCCeEEeccccchhh---------ccccchHHHhhhHHHHhhcCCcccccc
Confidence            11123345666776665543   33443 467999999876643         48899999999999999887 789999


Q ss_pred             CcchHHHHHHHHhcCC--------CccccCCHHHHHH-hcccCEEEeCCChHHHHhcCC
Q 015347          359 HEKEREGVEDVVGDDA--------SIVFITTPGQLQI-QQPYNLQTRVKSPALHCSALS  408 (408)
Q Consensus       359 gp~E~e~~~~I~~~~~--------~~~~i~~~~eLaA-i~~adl~I~nDSGpmHLAaa~  408 (408)
                      +|+|++.++++...+.        ++...+++.|+++ |++|+++||+|||+||||+|.
T Consensus       221 ~~~e~~~~~~~~~~~~~~~~~~~~~l~g~~sl~el~~li~~a~l~I~~Dtg~~HlAaa~  279 (348)
T d1pswa_         221 SAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVAAAL  279 (348)
T ss_dssp             CGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHHHTSSEEEEESSHHHHHHHHT
T ss_pred             ccchHHHHHHHHHhhhcccccccccccCCccHHHHHHHHhcceeEeecCccHHHHHHHc
Confidence            9999999998876432        1112356799999 999999999999999999973
>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1o6ca_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v4va_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure