Citrus Sinensis ID: 015358

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPFSSVLRPSVEFPTLTEENECDYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESG
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccccHHHHHHHHHHHHHHHHHcccccEEEccccccccccccccccccccccccHHHHHHHHHcccccccEEEEEEccccccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccEHEEHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHcHHHccccccccccccccccccccccccccccccccHHccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccHHcHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHcccccEEcccccccEEEEEEcccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msltrvkspgwaafdlkqrqkqglapetdkdsyppisstltslrncenvsrntdvlvkpfssvlrpsvefptlteenecdykgkhghkaIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGmvsssgsaeenketkiaessstidespcyrkggeiCFLEKaldlsnlstttgdgvndnfiESVDVRAssvinvsdkddgMKSIMERLsslpiepeweeddVYLVHRKDAMKMMRSASQHSKAannaylrgdhfsaQQHSLKARKEWLIAERLNSKAAKEILGirnsendmwkldLHGLHAAEAVQALQERLQKIemqrpmncsvspkkvkskngmvctaslesfgcmdmEVVDKQRSSLRQIQKSLQVITGignhsrgqaaLPTAVKNFLSESG
Flexible Loop (DISEMBL)
msltrvkspgwaafdlkqrqkqglapetdkdsyppisstltslrncenVSRNTDvlvkpfssvlrpsvefptltEENECDYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGmvsssgsaeenketkiaessstidespcyrKGGEICFLEKALDLSNLStttgdgvndnfiesvdvrassvinvsdkddgmkSIMERlsslpiepeweeDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIemqrpmncsvspkkvkskngMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITgignhsrgqaalptavknflsesg
Low Complexity Region (SEG)
MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPFSSVLRPSVEFPTLTEENECDYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESG
Disordered region (IsUnstruct)
***************************************************NTDVLVKPFSSVLRPSVEFPTL**********************DLALKKLKALHSWADNSLIEDLMEAV****************************************CYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVI****************************DVYLV*************************************ARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQ**************************MVCTASLESFGCMDMEVV************SLQVITGIG*********************
Disordered Region (DISOPRED)
***************************************************************************************************KKLKALHSWADNSLIEDLMEAVDNDIKRASNLL*****************************************************************************************************DVYLVHRKDAMKMMRSAS*H******************HSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKK************LESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSES*
Disordered Region (DISEMBL)
********PGWAAFDLK***************YPPISSTLTSLRNCENVSRNTDVLVKPFSSVLRPSVEFPTLTEENECDYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM************************SPCYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMK**********AANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPM************NGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESG
Disordered Region (DISPRO)
**********WAAF**K*RQKQ***********************************KPFSSVLRPSVEFPTLT*****************QHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS*************************************A*************************************GMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPM***********************FGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSE**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPFSSVLRPSVEFPTLTEENECDYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q08954	240	Smr domain-containing pro	yes	no	0.308	0.525	0.296	3e-05

>sp|Q08954|YP199_YEAST Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1

 Score = 50.4 bits (119), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 67/128 (52%), Gaps = 2/128 (1%)

Query: 233 DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAK 292
           D+ Y   R+ A +  +   Q S  +  AY +GD   A + S K++ +   AE  N +AA+
Sbjct: 23  DEEYQRLRRLADEAYKKRDQLSHESQTAYQQGDKKLAHELSEKSKAQLKTAEDFNMQAAE 82

Query: 293 EILGIRNSENDMWKLDLHGLHAAEAVQALQERLQ-KIEMQRPMNCSVSPKKVKSKNGMV- 350
            +    N+++   ++DLHGL+  EA+  LQ+R++  I+   P    +  K + S+NG+  
Sbjct: 83  YVFVENNADSSSNEIDLHGLYVKEALFILQKRIKFAIDHNEPQLNVIVGKGLHSQNGIAK 142

Query: 351 CTASLESF 358
              S+E F
Sbjct: 143 LKPSIEEF 150

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
225463171	435	PREDICTED: uncharacterized protein LOC10	0.992	0.931	0.590	1e-124
224144477	429	predicted protein [Populus trichocarpa]	0.926	0.881	0.505	8e-96
15237781	435	smr (Small MutS Related) domain-containi	0.980	0.919	0.484	2e-95
297812499	436	hypothetical protein ARALYDRAFT_910364 [	0.982	0.919	0.479	1e-93
356568571	432	PREDICTED: uncharacterized protein LOC10	0.963	0.909	0.463	7e-86
124359484	432	Smr protein/MutS2 C-terminal [Medicago t	0.953	0.900	0.465	2e-85
357507993	431	hypothetical protein MTR_7g081260 [Medic	0.953	0.902	0.465	2e-85
357507995	420	hypothetical protein MTR_7g081260 [Medic	0.953	0.926	0.465	2e-85
363807260	427	uncharacterized protein LOC100809786 [Gl	0.946	0.903	0.454	2e-83
449520321	608	PREDICTED: uncharacterized protein LOC10	0.973	0.652	0.449	6e-77

>gi|225463171|ref|XP_002267329.1| PREDICTED: uncharacterized protein LOC100263151 [Vitis vinifera]

 Score =  449 bits (1156), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 247/418 (59%), Positives = 291/418 (69%), Gaps = 13/418 (3%)

Query: 1   MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPF 60
           MS    KSPGWAAFDLKQRQKQGL PE DK+ YPPI S+ TSLR C N + N     + F
Sbjct: 1   MSSASGKSPGWAAFDLKQRQKQGLEPELDKEPYPPIPSSFTSLRPCRNSASN-GCSGRSF 59

Query: 61  SSVLRPSVEFPTLTEENECDYKGKHGHKAIEQHSRD-------LALKKLKALHSWADNSL 113
           SS+L PSV FPTL E  +C    + G+   +Q ++        +A  KLK L+SWADNSL
Sbjct: 60  SSLLVPSVNFPTLEENKDCKKPMQGGNSGNKQQTKVAEVSNLVIAFNKLKELYSWADNSL 119

Query: 114 IEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESP---CYRKGGEIC 170
           IED+M AVDNDI +AS LL  MVS+ GS EENKET I E +ST   +P   C  +     
Sbjct: 120 IEDIMAAVDNDIDKASTLLGAMVST-GSFEENKETSIVELNST-SGNPYENCKLQADNGV 177

Query: 171 FLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEW 230
           FL     LS LS+T GD + DN     D   SS  N+ D    M  I+ R+ S+PIEPEW
Sbjct: 178 FLGNGTVLSELSSTIGDLLIDNNKGLTDECGSSGKNLFDDAADMTLILGRMKSIPIEPEW 237

Query: 231 EEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKA 290
           EEDDVYL HRKDA++ MRSASQHS+AA NA+LRGDH SA+Q SLKA+ EW+ AERLNSKA
Sbjct: 238 EEDDVYLSHRKDAIRFMRSASQHSRAATNAFLRGDHVSAKQFSLKAKDEWVKAERLNSKA 297

Query: 291 AKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMV 350
           A EIL IRNS ND+WKLDLHGLHAAEAVQALQE L KIE Q P N SVSP + K+K G++
Sbjct: 298 ANEILDIRNSNNDLWKLDLHGLHAAEAVQALQEHLWKIETQMPFNRSVSPNRAKTKVGIL 357

Query: 351 CTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESG 408
            + SLESF C+D E +DKQ +  RQ   SLQVITG GNHSRGQAALPTAV++FL+E G
Sbjct: 358 RSPSLESFSCVDNEELDKQWTLSRQRPTSLQVITGRGNHSRGQAALPTAVRSFLNEHG 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144477|ref|XP_002325302.1| predicted protein [Populus trichocarpa] gi|222862177|gb|EEE99683.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (915), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 217/429 (50%), Positives = 279/429 (65%), Gaps = 51/429 (11%)

Query: 5   RVKSPGWAAFDLKQRQKQGLAPETD-KDSYPPISSTLTSLRNCENVSRNTDV---LVKPF 60
           RVKS GWAAFDLKQRQK G   E D KD +P I      L     + RN DV     K F
Sbjct: 7   RVKSSGWAAFDLKQRQKDG---EVDGKDPFPAIGD----LPVTGGLRRNDDVGGLSSKSF 59

Query: 61  SSVLRP--SVEFPTLTEENECDYKGK-----HGH----KAIEQH---SRDLALKKLKALH 106
           SSVL+P  S  FP L  +N  +   K      G+    K IE+    S  L L++LK +H
Sbjct: 60  SSVLQPPASAGFPALKTQNVNNLTAKVADFSAGYRVSDKVIEEKNGGSVLLDLQRLKEIH 119

Query: 107 SWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKG 166
            WAD SLIED+M +VDND ++A  LL GMVS++   E              DE   +  G
Sbjct: 120 GWADFSLIEDVMVSVDNDAEKACVLLNGMVSNADFDE--------------DEGAKFNSG 165

Query: 167 GEICFLEKAL--DLSNLSTTTGDGVNDNFIE----SVDVRASSVINVS-DKDDGMKSIME 219
                  K+L  D+++LS+T  D + DN       S+++R    ++ S D    MK I+ 
Sbjct: 166 -----FNKSLADDIADLSSTLEDALKDNDHNNDNNSIELREDVGVSSSVDAAANMKLILG 220

Query: 220 RLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKE 279
            L S+P+EPEWEEDDVYL HRK+A++MMR ASQHS+AA NA+LR DHFSAQQHSL+AR++
Sbjct: 221 HLKSIPVEPEWEEDDVYLSHRKNALRMMRLASQHSRAATNAFLRRDHFSAQQHSLRAREK 280

Query: 280 WLIAERLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVS 339
           W  AE+LN+KAAKEIL IRNS+ND WKLDLHGLHAAEA QALQE L KIE   P N S+S
Sbjct: 281 WSAAEQLNAKAAKEILSIRNSDNDPWKLDLHGLHAAEAGQALQEHLLKIETLVPNNRSIS 340

Query: 340 PKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTA 399
           P ++K+KNG++ ++  ++F  +D E +DKQ+++ RQ   SLQVITG+GNHSRGQAALPTA
Sbjct: 341 PCRIKTKNGILHSSPFDAFSTVDAENLDKQQATFRQRPTSLQVITGVGNHSRGQAALPTA 400

Query: 400 VKNFLSESG 408
           VK+FL+++G
Sbjct: 401 VKSFLNDNG 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237781|ref|NP_197743.1| smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana] gi|8809708|dbj|BAA97249.1| unnamed protein product [Arabidopsis thaliana] gi|22531192|gb|AAM97100.1| unknown protein [Arabidopsis thaliana] gi|23198016|gb|AAN15535.1| unknown protein [Arabidopsis thaliana] gi|332005795|gb|AED93178.1| smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana]

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 204/421 (48%), Positives = 279/421 (66%), Gaps = 21/421 (4%)

Query: 1   MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCEN-VSRNTDVLVKP 59
           MS  + KS GW AFDLKQRQKQGL  E + D +PP+S+++ +       + RN +   K 
Sbjct: 1   MSWMKGKSSGWTAFDLKQRQKQGLESEVEGDPFPPVSTSVNASFGVRGRLRRNHEPSEKS 60

Query: 60  FSSVLRPSVEFPTLTEENECDYKGKHG-------HKAIEQHSRDLALKKLKALHSWADNS 112
           FSSVL P   FP LTE  +C  + + G         ++  +S DLA  KLK ++SWAD++
Sbjct: 61  FSSVLLPPSRFPALTENKDCGNQERGGCCRRKPDTLSLPVNSHDLAFTKLKEMNSWADDN 120

Query: 113 LIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFL 172
           LI D++ + ++D + A   L+GMVSS G  +E   +KI E  S+ +    YR   +   +
Sbjct: 121 LIRDVLLSTEDDFEMALAFLKGMVSS-GKEDEEPTSKI-EGYSSDNRRSEYRTFEKT--V 176

Query: 173 EKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDK----DD--GMKSIMERLSSLPI 226
             ++ ++  ST    G  D  +E+ D  +S ++N SD     DD   + SI++RL S+PI
Sbjct: 177 TSSVKMAARSTFEDAGKYD--LENSDG-SSFLVNASDNEKFPDDISELDSIIQRLQSIPI 233

Query: 227 EPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERL 286
           EPEWEEDD+YL HRKDA+K+MRSAS HS+AA NA+ R DH SA+QHS KAR++WL AE+L
Sbjct: 234 EPEWEEDDLYLSHRKDALKVMRSASNHSRAAQNAFQRYDHASAKQHSDKAREDWLAAEKL 293

Query: 287 NSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSK 346
           N++AAK+I+GI N +ND+WKLDLHGLHA EAVQALQERLQ IE    +N SVSP + +SK
Sbjct: 294 NAEAAKKIIGITNKDNDIWKLDLHGLHATEAVQALQERLQMIEGHFTVNRSVSPNRGRSK 353

Query: 347 NGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSE 406
           N  + +AS E FG +D E +  QR+S R+++ SLQVITGIG HSRGQA+LP AVK F  +
Sbjct: 354 NAALRSASQEPFGRLDEEGMHCQRTSSRELRNSLQVITGIGKHSRGQASLPLAVKTFFED 413

Query: 407 S 407
           +
Sbjct: 414 N 414

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812499|ref|XP_002874133.1| hypothetical protein ARALYDRAFT_910364 [Arabidopsis lyrata subsp. lyrata] gi|297319970|gb|EFH50392.1| hypothetical protein ARALYDRAFT_910364 [Arabidopsis lyrata subsp. lyrata]

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 202/421 (47%), Positives = 272/421 (64%), Gaps = 20/421 (4%)

Query: 1   MSLTRVKSPGWAAFDLKQRQKQGLAPET-DKDSYPPISSTL-TSLRNCENVSRNTDVLVK 58
           MS  + KS GW AFDLKQRQKQGL  E  D D +PP+S+++  SL     + R+ +   K
Sbjct: 1   MSWMKGKSSGWTAFDLKQRQKQGLESEVKDDDPFPPVSTSVNASLGVRGKLIRDHEPSEK 60

Query: 59  PFSSVLRPSVEFPTLTEENECDY-------KGKHGHKAIEQHSRDLALKKLKALHSWADN 111
            FSSVL P   FP LTE  +C         K K G   +  +S D A  KLK ++SWAD+
Sbjct: 61  SFSSVLLPPSRFPALTENKDCGNEERGGGCKRKPGTSILPVNSHDSAFMKLKEMNSWADD 120

Query: 112 SLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICF 171
           +LI D++ + +++ + A + L+GMVSSS  AEE   T   E  S+ +    Y+  G+   
Sbjct: 121 NLIRDVLLSTEDNFEMALDFLKGMVSSSKEAEE--PTSKIEGYSSDNRRSEYKTFGKT-- 176

Query: 172 LEKALDLSNLSTTTGDGVNDNFIESVD-----VRASSVINVSDKDDGMKSIMERLSSLPI 226
           +  ++ ++  ST    G  D  ++  D     V AS     SD    + SI++RL S+PI
Sbjct: 177 VTSSVKMAARSTCEDAGKYD--LQESDGSPPLVNASDSEKFSDDISELDSIIQRLQSIPI 234

Query: 227 EPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERL 286
           EPEWEEDD+YL HRKDA+KMMRSA+ HS+AA NA+ R DH SA+QHS KAR++WL A +L
Sbjct: 235 EPEWEEDDLYLSHRKDALKMMRSAANHSRAAQNAFQRYDHASAKQHSEKAREDWLTAAKL 294

Query: 287 NSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSK 346
           N++AAK+I+GI N +ND+WKLDLHGLHA EAVQALQERLQKIE    +N SVSP +  SK
Sbjct: 295 NAEAAKKIIGITNKDNDIWKLDLHGLHATEAVQALQERLQKIEGHFTVNRSVSPNRGSSK 354

Query: 347 NGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSE 406
           N  + +AS E FG +D E +  QR+S R+++ S+QV+TGIG HSRG A+LP AVK F  +
Sbjct: 355 NAALRSASQEPFGRLDGEGMHCQRTSSREVRNSVQVVTGIGKHSRGHASLPLAVKTFFED 414

Query: 407 S 407
           +
Sbjct: 415 N 415

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568571|ref|XP_003552484.1| PREDICTED: uncharacterized protein LOC100810197 [Glycine max]

 Score =  323 bits (829), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 192/414 (46%), Positives = 260/414 (62%), Gaps = 21/414 (5%)

Query: 1   MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPF 60
           MS  + +S GW AFDLKQR+ +    E D D +P I  T       + + +   V  KPF
Sbjct: 12  MSWAKGQSSGWTAFDLKQRKNKDFESEVDDDPFPAIGPT-------DPIIKKNHVPAKPF 64

Query: 61  SSVLRPSVEFPTLTEENEC-------DYKGKHGHKAIEQHSRDLALKKLKALHSWADNSL 113
           SSVL P+  FP L E+          D  GK+   A  Q   +LA+KKL+  H WA++SL
Sbjct: 65  SSVLLPTKNFPPLNEDGNSKKAMLGSDSDGKYC-GATTQEDVNLAIKKLREQHLWAEHSL 123

Query: 114 IEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLE 173
           I+D+  AV+N+I +A++LLE M  +  + EE+K   I   S+T D++PC  K  +    E
Sbjct: 124 IDDIFTAVNNNIDKATSLLETMAPAV-NFEESK-VSINPRSTTSDDTPCMDKTDDSLTSE 181

Query: 174 KALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWEED 233
           K  D         D + DN  +  D  A S   +S  D  ++  M+ L+S+P+EPEWE+D
Sbjct: 182 KVEDDIPFDYNLVDNLQDNDKDLEDRNAPSGQKLSGVD-YLRCKMKLLNSVPVEPEWEDD 240

Query: 234 DVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKE 293
           D+Y+ +RKDA++ MR AS+HSKAA++A+LRGDHFSAQ HS+KAR EW  AE LNS AAK+
Sbjct: 241 DIYISNRKDALRTMRLASRHSKAASSAFLRGDHFSAQHHSMKARAEWHTAEELNSDAAKK 300

Query: 294 ILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTA 353
           IL IRN+END+W+LDLHGLHA EA+QALQE L +IE Q     S +   VK +NG+   +
Sbjct: 301 ILSIRNNENDIWRLDLHGLHATEAIQALQEHLYRIECQGFSKSSATSNGVK-ENGL-GHS 358

Query: 354 SLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSES 407
           +L SF  MD E +D Q + LR    +L VITGIGNHSRG AALP AV++FL+E+
Sbjct: 359 TLGSFNFMDREKLDTQ-APLRLRPLALHVITGIGNHSRGLAALPAAVRSFLNEN 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359484|gb|ABN05922.1| Smr protein/MutS2 C-terminal [Medicago truncatula]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 194/417 (46%), Positives = 258/417 (61%), Gaps = 28/417 (6%)

Query: 1   MSLTRVKSP-GWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKP 59
           MS +R K P GW AFDLKQ+ K  +  E DKD +PPI S+ +S+R+ +   +   V +KP
Sbjct: 13  MSWSRGKQPSGWTAFDLKQKMKNSIDSEVDKDPFPPIGSS-SSMRHGDKFVKKKHVPLKP 71

Query: 60  FSSVLRPSVEFPTLTEENECDYKGKHGHKAI---------EQHSRDLALKKLKALHSWAD 110
           FSSVL P+V FP L E         +G KA+          Q   +   K LK  H WA+
Sbjct: 72  FSSVLVPNVNFPPLKE-------AGNGQKAVLGSDSCGTTAQEDVNGPTKMLKEQHPWAE 124

Query: 111 NSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEIC 170
           NSLI+D++ AV+N++ +A  LLE M S+    E    +         D+     K GE  
Sbjct: 125 NSLIDDILAAVNNNVDKAVALLETMASAVNFEEHKVLSNPHPRPLISDDVTRVVKTGESL 184

Query: 171 FLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEW 230
            LE   D     +     + DN  +  +  A S    SD       +M+ L+S+P+EPEW
Sbjct: 185 ALEMVKDDILFHSNIVGQLQDNNKDLENRYAFSGQKFSD-------VMDLLNSVPVEPEW 237

Query: 231 EEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKA 290
           EEDD+YL HRKDA+K MRSAS+HSKAA NA+L+G+HFSAQQHS +AR+EW  A++LNS+A
Sbjct: 238 EEDDIYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNADKLNSEA 297

Query: 291 AKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMV 350
           A +IL IRNS+ND+ +LDLHGLHAAEAVQALQE L++IE Q   + S++P     KNG  
Sbjct: 298 ATKILSIRNSDNDISRLDLHGLHAAEAVQALQEHLRRIESQG-FSKSLAPSNNAKKNG-D 355

Query: 351 CTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSES 407
             ++L S   MD E +DKQ   LR    ++ VITG+GNHSRGQAALPTAV++FLSE+
Sbjct: 356 AHSTLGSLNLMDWENLDKQ-VPLRLRSLAVHVITGVGNHSRGQAALPTAVRSFLSEN 411

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507993|ref|XP_003624285.1| hypothetical protein MTR_7g081260 [Medicago truncatula] gi|355499300|gb|AES80503.1| hypothetical protein MTR_7g081260 [Medicago truncatula]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 194/417 (46%), Positives = 258/417 (61%), Gaps = 28/417 (6%)

Query: 1   MSLTRVKSP-GWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKP 59
           MS +R K P GW AFDLKQ+ K  +  E DKD +PPI S+ +S+R+ +   +   V +KP
Sbjct: 12  MSWSRGKQPSGWTAFDLKQKMKNSIDSEVDKDPFPPIGSS-SSMRHGDKFVKKKHVPLKP 70

Query: 60  FSSVLRPSVEFPTLTEENECDYKGKHGHKAI---------EQHSRDLALKKLKALHSWAD 110
           FSSVL P+V FP L E         +G KA+          Q   +   K LK  H WA+
Sbjct: 71  FSSVLVPNVNFPPLKE-------AGNGQKAVLGSDSCGTTAQEDVNGPTKMLKEQHPWAE 123

Query: 111 NSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEIC 170
           NSLI+D++ AV+N++ +A  LLE M S+    E    +         D+     K GE  
Sbjct: 124 NSLIDDILAAVNNNVDKAVALLETMASAVNFEEHKVLSNPHPRPLISDDVTRVVKTGESL 183

Query: 171 FLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEW 230
            LE   D     +     + DN  +  +  A S    SD       +M+ L+S+P+EPEW
Sbjct: 184 ALEMVKDDILFHSNIVGQLQDNNKDLENRYAFSGQKFSD-------VMDLLNSVPVEPEW 236

Query: 231 EEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKA 290
           EEDD+YL HRKDA+K MRSAS+HSKAA NA+L+G+HFSAQQHS +AR+EW  A++LNS+A
Sbjct: 237 EEDDIYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNADKLNSEA 296

Query: 291 AKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMV 350
           A +IL IRNS+ND+ +LDLHGLHAAEAVQALQE L++IE Q   + S++P     KNG  
Sbjct: 297 ATKILSIRNSDNDISRLDLHGLHAAEAVQALQEHLRRIESQG-FSKSLAPSNNAKKNG-D 354

Query: 351 CTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSES 407
             ++L S   MD E +DKQ   LR    ++ VITG+GNHSRGQAALPTAV++FLSE+
Sbjct: 355 AHSTLGSLNLMDWENLDKQ-VPLRLRSLAVHVITGVGNHSRGQAALPTAVRSFLSEN 410

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507995|ref|XP_003624286.1| hypothetical protein MTR_7g081260 [Medicago truncatula] gi|355499301|gb|AES80504.1| hypothetical protein MTR_7g081260 [Medicago truncatula]

 Score =  322 bits (824), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 194/417 (46%), Positives = 258/417 (61%), Gaps = 28/417 (6%)

Query: 1   MSLTRVKSP-GWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKP 59
           MS +R K P GW AFDLKQ+ K  +  E DKD +PPI S+ +S+R+ +   +   V +KP
Sbjct: 1   MSWSRGKQPSGWTAFDLKQKMKNSIDSEVDKDPFPPIGSS-SSMRHGDKFVKKKHVPLKP 59

Query: 60  FSSVLRPSVEFPTLTEENECDYKGKHGHKAI---------EQHSRDLALKKLKALHSWAD 110
           FSSVL P+V FP L E         +G KA+          Q   +   K LK  H WA+
Sbjct: 60  FSSVLVPNVNFPPLKE-------AGNGQKAVLGSDSCGTTAQEDVNGPTKMLKEQHPWAE 112

Query: 111 NSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEIC 170
           NSLI+D++ AV+N++ +A  LLE M S+    E    +         D+     K GE  
Sbjct: 113 NSLIDDILAAVNNNVDKAVALLETMASAVNFEEHKVLSNPHPRPLISDDVTRVVKTGESL 172

Query: 171 FLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEW 230
            LE   D     +     + DN  +  +  A S    SD       +M+ L+S+P+EPEW
Sbjct: 173 ALEMVKDDILFHSNIVGQLQDNNKDLENRYAFSGQKFSD-------VMDLLNSVPVEPEW 225

Query: 231 EEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKA 290
           EEDD+YL HRKDA+K MRSAS+HSKAA NA+L+G+HFSAQQHS +AR+EW  A++LNS+A
Sbjct: 226 EEDDIYLSHRKDALKTMRSASRHSKAAANAFLKGEHFSAQQHSARAREEWHNADKLNSEA 285

Query: 291 AKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMV 350
           A +IL IRNS+ND+ +LDLHGLHAAEAVQALQE L++IE Q   + S++P     KNG  
Sbjct: 286 ATKILSIRNSDNDISRLDLHGLHAAEAVQALQEHLRRIESQG-FSKSLAPSNNAKKNGD- 343

Query: 351 CTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSES 407
             ++L S   MD E +DKQ   LR    ++ VITG+GNHSRGQAALPTAV++FLSE+
Sbjct: 344 AHSTLGSLNLMDWENLDKQ-VPLRLRSLAVHVITGVGNHSRGQAALPTAVRSFLSEN 399

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807260|ref|NP_001242104.1| uncharacterized protein LOC100809786 [Glycine max] gi|255639453|gb|ACU20021.1| unknown [Glycine max]

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 189/416 (45%), Positives = 258/416 (62%), Gaps = 30/416 (7%)

Query: 1   MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPF 60
           MS  R +S GW AFDLKQR+      E D+D +P I +T       + +     V  KPF
Sbjct: 12  MSWARGQSSGWTAFDLKQRKNNNFESEDDEDPFPAIGTT-------DPMVGKNHVPAKPF 64

Query: 61  SSVLRPSVEFPTLTEENEC-------DYKGKHGHKAIEQHSRDLALKKLKALHSWADNSL 113
           SSVL P+  FP   E           D  GK+   A  Q   +LA+KKL+  H WA++SL
Sbjct: 65  SSVLLPTRNFPPFKEGGNSKKAMVGSDSDGKYC-GATAQEDVNLAIKKLREQHLWAEHSL 123

Query: 114 IEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAES--SSTIDESPCYRKGGEICF 171
           I+D+  AV+N+I +A+ LLE M      A   +E+K++ +  S+T D++PC  K  +   
Sbjct: 124 IDDIFSAVNNNIDKATALLETM----DPAANFEESKVSSNPRSTTSDDTPCKDKTDDSLT 179

Query: 172 LEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWE 231
            EK  D     +   D + DN  +  D  A S   +SD D  ++  M+ L+S+P+EPEWE
Sbjct: 180 SEKVEDDIPFDSNLVDNLQDNDKDLEDRNAPSGQKLSDVD-YLRCKMKLLNSIPVEPEWE 238

Query: 232 EDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAA 291
           +DD+Y+ +RKDA++ MRSAS+HS+AA++A+LRGDHFSAQ HS+KAR E   AE LNS AA
Sbjct: 239 DDDIYISNRKDALRTMRSASRHSRAASSAFLRGDHFSAQHHSMKARAERHTAEELNSDAA 298

Query: 292 KEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVC 351
           K+IL +RN+END+WKLDLHGLHA EA+QALQE L +IE Q     S +   VK +NG+  
Sbjct: 299 KKILSVRNNENDIWKLDLHGLHATEAIQALQEHLYRIESQGFSKSSATSNGVK-ENGL-G 356

Query: 352 TASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSES 407
            ++L S   MD E      + LR    +L VITG+GNHSRGQAALPTAV++FL+E+
Sbjct: 357 HSTLGSLNFMDRE------APLRLRPLALHVITGVGNHSRGQAALPTAVRSFLNEN 406

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520321|ref|XP_004167182.1| PREDICTED: uncharacterized protein LOC101231408 [Cucumis sativus]

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 187/416 (44%), Positives = 249/416 (59%), Gaps = 19/416 (4%)

Query: 7   KSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPFSSVLRP 66
           KSPGW  F+LKQ  K GL  E D +++PP+ +  +SL   EN+        + F+S   P
Sbjct: 179 KSPGWEEFNLKQHSK-GLQDEMDLEAFPPMLTNRSSLPPYENLHGVYGRSGRSFASEPLP 237

Query: 67  SVEFPTLTEENEC------DYKGKHGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEA 120
           SV++ T  E          D   + G K +E+++  LA  KLK +HSWAD SLI D+M+A
Sbjct: 238 SVDYLTSPENYGAKNTIADDSSIQSGKKVVEENTDVLAFWKLKEIHSWADFSLIVDIMDA 297

Query: 121 VDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSN 180
           V+N+   AS LL+ MVSS      N+ + +   S+  ++  C          E+ ++   
Sbjct: 298 VNNNFDEASTLLKTMVSSDNFEINNEISTLGLHSA--NDLLCNGNNDVSIASERTINAPI 355

Query: 181 LSTTTG--DGVNDNFIESVDVRASSVIN-----VSDKDDGMKSIMERLS-SLPIEPEWEE 232
           LS+T     G++ N   S +       N      S  + G   I    S S+PIEPEWEE
Sbjct: 356 LSSTVKAVQGIHQNNNTSREDYTKLFANDYFERNSFHNTGNSKIALGCSKSVPIEPEWEE 415

Query: 233 DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAK 292
           DD+YL HRKDA+ MMRSASQHS+AA NAY R DH SA+ HS +A ++WL A+ LN KAA 
Sbjct: 416 DDIYLSHRKDAIAMMRSASQHSRAATNAYRRKDHASAKYHSSRAEEQWLAAKMLNDKAAN 475

Query: 293 EILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCT 352
           EIL  RNS+N +WKLDLHGLHAAEAVQAL + L KIE Q   N S+SPKK + K G    
Sbjct: 476 EILQTRNSKNGLWKLDLHGLHAAEAVQALHDHLLKIETQNASNRSLSPKKAERK-GFQRA 534

Query: 353 ASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSESG 408
           +SLE   CM+ + +DK+  S R    SL+VITGIG HS+G+AALP AV +FL+E+G
Sbjct: 535 SSLEYLSCMESK-LDKESPSSRHRPTSLEVITGIGKHSKGEAALPKAVASFLTENG 589

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2171676	435	AT5G23520 [Arabidopsis thalian	0.980	0.919	0.489	2.7e-91
SGD|S000006120	240	YPL199C "Putative protein of u	0.308	0.525	0.296	1.8e-06
CGD|CAL0006270	256	orf19.2246 [Candida albicans (	0.286	0.457	0.288	2.6e-05
UNIPROTKB|Q59Z54	256	CaO19.2246 "Putative uncharact	0.286	0.457	0.288	2.6e-05
DICTYBASE|DDB_G0288821	316	DDB_G0288821 "K homology (KH),	0.365	0.471	0.267	2.6e-05
DICTYBASE|DDB_G0287897	606	DDB_G0287897 "CCCH-type zinc f	0.245	0.165	0.281	0.00014

TAIR|locus:2171676 AT5G23520 [Arabidopsis thaliana (taxid:3702)]

 Score = 910 (325.4 bits), Expect = 2.7e-91, P = 2.7e-91
 Identities = 206/421 (48%), Positives = 279/421 (66%)

Query:     1 MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCEN-VSRNTDVLVKP 59
             MS  + KS GW AFDLKQRQKQGL  E + D +PP+S+++ +       + RN +   K 
Sbjct:     1 MSWMKGKSSGWTAFDLKQRQKQGLESEVEGDPFPPVSTSVNASFGVRGRLRRNHEPSEKS 60

Query:    60 FSSVLRPSVEFPTLTEENECDYKGKHG---HK----AIEQHSRDLALKKLKALHSWADNS 112
             FSSVL P   FP LTE  +C  + + G    K    ++  +S DLA  KLK ++SWAD++
Sbjct:    61 FSSVLLPPSRFPALTENKDCGNQERGGCCRRKPDTLSLPVNSHDLAFTKLKEMNSWADDN 120

Query:   113 LIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFL 172
             LI D++ + ++D + A   L+GMVSS G  +E   +KI   SS    S  YR   +   +
Sbjct:   121 LIRDVLLSTEDDFEMALAFLKGMVSS-GKEDEEPTSKIEGYSSDNRRSE-YRTFEKT--V 176

Query:   173 EKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDK----DD--GMKSIMERLSSLPI 226
               ++ ++  ST    G  D  +E+ D  +S ++N SD     DD   + SI++RL S+PI
Sbjct:   177 TSSVKMAARSTFEDAGKYD--LENSD-GSSFLVNASDNEKFPDDISELDSIIQRLQSIPI 233

Query:   227 EPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERL 286
             EPEWEEDD+YL HRKDA+K+MRSAS HS+AA NA+ R DH SA+QHS KAR++WL AE+L
Sbjct:   234 EPEWEEDDLYLSHRKDALKVMRSASNHSRAAQNAFQRYDHASAKQHSDKAREDWLAAEKL 293

Query:   287 NSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSK 346
             N++AAK+I+GI N +ND+WKLDLHGLHA EAVQALQERLQ IE    +N SVSP + +SK
Sbjct:   294 NAEAAKKIIGITNKDNDIWKLDLHGLHATEAVQALQERLQMIEGHFTVNRSVSPNRGRSK 353

Query:   347 NGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSE 406
             N  + +AS E FG +D E +  QR+S R+++ SLQVITGIG HSRGQA+LP AVK F  +
Sbjct:   354 NAALRSASQEPFGRLDEEGMHCQRTSSRELRNSLQVITGIGKHSRGQASLPLAVKTFFED 413

Query:   407 S 407
             +
Sbjct:   414 N 414

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

SGD|S000006120 YPL199C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 134 (52.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 38/128 (29%), Positives = 67/128 (52%)

Query:   233 DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAK 292
             D+ Y   R+ A +  +   Q S  +  AY +GD   A + S K++ +   AE  N +AA+
Sbjct:    23 DEEYQRLRRLADEAYKKRDQLSHESQTAYQQGDKKLAHELSEKSKAQLKTAEDFNMQAAE 82

Query:   293 EILGIRNSENDMWKLDLHGLHAAEAVQALQERLQ-KIEMQRPMNCSVSPKKVKSKNGMV- 350
              +    N+++   ++DLHGL+  EA+  LQ+R++  I+   P    +  K + S+NG+  
Sbjct:    83 YVFVENNADSSSNEIDLHGLYVKEALFILQKRIKFAIDHNEPQLNVIVGKGLHSQNGIAK 142

Query:   351 CTASLESF 358
                S+E F
Sbjct:   143 LKPSIEEF 150

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0008150 "biological_process" evidence=ND

CGD|CAL0006270 orf19.2246 [Candida albicans (taxid:5476)]

 Score = 125 (49.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 34/118 (28%), Positives = 60/118 (50%)

Query:   233 DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAK 292
             D  Y   R +A ++ +   Q S+ + NAY +GD   A + S ++++    AE  N KAA+
Sbjct:    25 DSEYKRLRSEADRLFQKRQQLSQQSQNAYKQGDGQKAHELSEESKRVLAQAEECNRKAAE 84

Query:   293 EILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKK-VKSKNGM 349
              +    N ++   ++DLHGL+  EA   L+ R+        ++ +V   K + S NG+
Sbjct:    85 YVFRENNEDSGPDEIDLHGLYVKEAEWILERRIYYAVKTNQLHLNVIVGKGLHSANGV 142

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59Z54 CaO19.2246 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 125 (49.1 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 34/118 (28%), Positives = 60/118 (50%)

Query:   233 DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAK 292
             D  Y   R +A ++ +   Q S+ + NAY +GD   A + S ++++    AE  N KAA+
Sbjct:    25 DSEYKRLRSEADRLFQKRQQLSQQSQNAYKQGDGQKAHELSEESKRVLAQAEECNRKAAE 84

Query:   293 EILGIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKK-VKSKNGM 349
              +    N ++   ++DLHGL+  EA   L+ R+        ++ +V   K + S NG+
Sbjct:    85 YVFRENNEDSGPDEIDLHGLYVKEAEWILERRIYYAVKTNQLHLNVIVGKGLHSANGV 142

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0288821 DDB_G0288821 "K homology (KH), type 1 domain containing-protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 127 (49.8 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 42/157 (26%), Positives = 77/157 (49%)

Query:   180 NLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERL-SSLPIEPEWEEDDVYLV 238
             N  T T  G +D+  +    RA  +IN    +   +S  ++  S +  + E E      +
Sbjct:   116 NGETITVRGSSDSDCQ----RAIDMINKIKGEHKTQSQKDKEHSDMKDDHEKEHQRTEEL 171

Query:   239 HRKDAMKMMRSASQHS---KAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEIL 295
             ++K   K+ R A +     K A+ A+  GD     Q   +A+ +    E+ + +A+K + 
Sbjct:   172 YKKGQEKVDRIAKERDDLHKQADKAFESGDKSLGHQLREQAKAKTQELEKASKEASKSVF 231

Query:   296 GIRNSENDMWKLDLHGLHAAEAVQALQERLQKIEMQR 332
               +N++ND + +DLHGLHA +A++ L E L  I+  +
Sbjct:   232 IAKNAKNDKFTVDLHGLHANDAIELLVEHLDGIKSNK 268

GO:0003723 "RNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0287897 DDB_G0287897 "CCCH-type zinc finger-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 113 (44.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 31/110 (28%), Positives = 56/110 (50%)

Query:   229 EWEEDDV-----YLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIA 283
             EW E  V     Y  HR+ A+   R  ++    A  A+  G   ++++++L+A++   + 
Sbjct:   451 EWVETGVEVSLLYKQHRESAILHARERNRLFNQAARAF--GSAVTSREYALEAQQHDALM 508

Query:   284 ERLNSKAAKEILGIRNSENDMWK---LDLHGLHAAEAVQALQERLQKIEM 330
             +  N KA   I   RN + D      LD HGLH +EA++ L++ L ++ +
Sbjct:   509 KEYNRKARDIIFNTRNKDYDPVNNNVLDFHGLHVSEALEILEDHLDRLPL 558

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003630001 SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (435 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
pfam08590	66	pfam08590, DUF1771, Domain of unknown function (DU	2e-06
pfam01713	80	pfam01713, Smr, Smr domain	3e-05
smart00463	80	smart00463, SMR, Small MutS-related domain	3e-05

>gnl|CDD|117164 pfam08590, DUF1771, Domain of unknown function (DUF1771)

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 20/65 (30%), Positives = 33/65 (50%)

Query: 236 YLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEIL 295
           Y   R +A K  +  ++  + A  AY RGD  +A++ S + +K    AE  N +AA+ I 
Sbjct: 2   YQRLRAEADKHGQKRNELFQKAAEAYKRGDKAAAKELSEEGKKHGEKAEEANRQAAEAIF 61

Query: 296 GIRNS 300
              N+
Sbjct: 62  RENNA 66

This domain is always found adjacent to pfam01713. Length = 66

>gnl|CDD|216658 pfam01713, Smr, Smr domain

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 45/100 (45%)

Query: 307 LDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVV 366
           LDLHGL   EA+ AL++ L +                                     + 
Sbjct: 1   LDLHGLTVEEALDALEDFLDE--------------------------------AWAKGI- 27

Query: 367 DKQRSSLRQIQKSLQVITGIGNHSRGQAALPTAVKNFLSE 406
                      + + +I G G+HS+G   L +AV+ +L +
Sbjct: 28  -----------RCVLIIHGKGSHSKG-GVLKSAVREWLRQ 55

This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2. This domain exhibits nicking endonuclease activity that might have a role in mismatch repair or genetic recombination. It shows no significant double strand cleavage or exonuclease activity. The full-length human NEDD4-binding protein 2 also has the polynucleotide kinase activity. Length = 80

>gnl|CDD|214676 smart00463, SMR, Small MutS-related domain

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 44/106 (41%)

Query: 304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDM 363
            W LDLHGL   EA+ AL + L                                      
Sbjct: 1   KWSLDLHGLTVEEALTALDKFLNNA----------------------------------- 25

Query: 364 EVVDKQRSSLRQIQKSLQVITGIGNHSR-GQAALPTAVKNFLSESG 408
                    L+ +++ L +ITG G HS  G++ +  A+K  L    
Sbjct: 26  --------RLKGLEQKLVIITGKGKHSLGGKSGVKPALKEHLRVES 63

Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
PF08590	66	DUF1771: Domain of unknown function (DUF1771); Int	99.53
PF01713	83	Smr: Smr domain; InterPro: IPR002625 This family i	99.33
smart00463	80	SMR Small MutS-related domain.	99.33
COG2840	184	Uncharacterized protein conserved in bacteria [Fun	98.43
KOG2401	448	consensus Predicted MutS-related protein involved	98.2
PRK04946	181	hypothetical protein; Provisional	98.03
PRK00409	782	recombination and DNA strand exchange inhibitor pr	97.23
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	97.13
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	96.96
smart00546	43	CUE Domain that may be involved in binding ubiquit	96.61
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	93.09
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	86.54
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	86.17
PF03474	39	DMA: DMRTA motif; InterPro: IPR005173 This region	81.72

>PF08590 DUF1771: Domain of unknown function (DUF1771); InterPro: IPR013899 This domain is almost always found adjacent to IPR002625 from INTERPRO

Probab=99.53  E-value=1.9e-15  Score=118.56  Aligned_cols=66  Identities=27%  Similarity=0.295  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015358          235 VYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNS  300 (408)
Q Consensus       235 ~Y~~~RkeA~~~~r~R~~~~~~Aa~Af~rGd~~aAk~lS~kAr~~~~~ae~an~kAA~~If~~rN~  300 (408)
                      +|..+|.+|..+++.|++||++|++||++||+..|++||++|+.|..+|+++|.+||+.||..+|.
T Consensus         1 ~Y~~~R~~A~~~~~~r~~~~~~A~~Ay~~Gd~~~A~~ls~~gk~~~~~~~~~n~~AA~~I~~~~N~   66 (66)
T PF08590_consen    1 DYEKLRAEADEHARKRNECFQKAAEAYRRGDKAAAKELSEEGKQHNEKMKEANRQAAEAIFEERNA   66 (66)
T ss_dssp             --------------------------------------------------SHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            499999999999999999999999999999999999999999999999999999999999999983

; PDB: 2VKC_A.

>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein

Probab=99.33  E-value=2.2e-12  Score=103.90  Aligned_cols=55  Identities=45%  Similarity=0.739  Sum_probs=44.2

Q ss_pred             eecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEEEEcc
Q 015358          307 LDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITGI  386 (408)
Q Consensus       307 LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~VITG~  386 (408)
                      |||||+++.||+.+|+++|..++.+-                                            ...|.||||+
T Consensus         1 iDLHG~~~~eA~~~l~~~l~~~~~~~--------------------------------------------~~~~~II~G~   36 (83)
T PF01713_consen    1 IDLHGLTVEEALRALEEFLDEARQRG--------------------------------------------IRELRIITGK   36 (83)
T ss_dssp             EE-TTS-HHHHHHHHHHHHHHHHHTT--------------------------------------------HSEEEEE--S
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHcC--------------------------------------------CCEEEEEecc
Confidence            89999999999999999999986430                                            1379999999


Q ss_pred             CCCCCCCCCcHHHHHHHHHh
Q 015358          387 GNHSRGQAALPTAVKNFLSE  406 (408)
Q Consensus       387 G~HS~G~arL~pAV~~fL~e  406 (408)
                      |+||.++. |+++|+.||.+
T Consensus        37 G~hS~~g~-Lk~~V~~~L~~   55 (83)
T PF01713_consen   37 GNHSKGGV-LKRAVRRWLEE   55 (83)
T ss_dssp             TCTCCTSH-HHHHHHHHHHH
T ss_pred             CCCCCCCc-HHHHHHHHHHh
Confidence            99999665 99999999965

It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.

>smart00463 SMR Small MutS-related domain

Probab=99.33  E-value=2.4e-12  Score=103.02  Aligned_cols=62  Identities=39%  Similarity=0.659  Sum_probs=52.4

Q ss_pred             CCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEEE
Q 015358          304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVI  383 (408)
Q Consensus       304 ~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~VI  383 (408)
                      .|+|||||+++.||+.+|+.+|+.++...                                        .   ...+.||
T Consensus         1 ~~~lDLHG~~~~eA~~~l~~~l~~~~~~~----------------------------------------~---~~~~~II   37 (80)
T smart00463        1 KWSLDLHGLTVEEALTALDKFLNNARLKG----------------------------------------L---EQKLVII   37 (80)
T ss_pred             CCeEEcCCCCHHHHHHHHHHHHHHHHHcC----------------------------------------C---CceEEEE
Confidence            47999999999999999999999986420                                        0   0369999


Q ss_pred             EccCCCCC-CCCCcHHHHHHHHHhcC
Q 015358          384 TGIGNHSR-GQAALPTAVKNFLSESG  408 (408)
Q Consensus       384 TG~G~HS~-G~arL~pAV~~fL~e~G  408 (408)
                      ||+|+||. |.++|+++|.++|...+
T Consensus        38 ~G~G~~s~~g~~~i~~~l~~~l~~~~   63 (80)
T smart00463       38 TGKGKHSLGGKSGVKPALKEHLRVES   63 (80)
T ss_pred             EcccCCCccchhhHHHHHHhchhhcc
Confidence            99999998 77999999999997643

>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.43  E-value=4.3e-07  Score=85.13  Aligned_cols=60  Identities=32%  Similarity=0.472  Sum_probs=51.5

Q ss_pred             CCCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEE
Q 015358          303 DMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQV  382 (408)
Q Consensus       303 ~~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~V  382 (408)
                      ....|||||+++.||-..|-.+|......                                            +..++.|
T Consensus        95 ~e~~LDLHG~tq~eAr~~L~~Fi~~a~~~--------------------------------------------~~rcv~V  130 (184)
T COG2840          95 PEARLDLHGLTQEEARQELGAFIARARAE--------------------------------------------GLRCVLV  130 (184)
T ss_pred             cceeeeccCCCHHHHHHHHHHHHHHHHHh--------------------------------------------CCcEEEE
Confidence            57899999999999999999999987432                                            1237999


Q ss_pred             EEccCCCCCC-CCCcHHHHHHHHHhc
Q 015358          383 ITGIGNHSRG-QAALPTAVKNFLSES  407 (408)
Q Consensus       383 ITG~G~HS~G-~arL~pAV~~fL~e~  407 (408)
                      |||.|. |.| .+.|+..|..||.+.
T Consensus       131 ihGkG~-s~g~~~vLK~~Vp~WL~qh  155 (184)
T COG2840         131 IHGKGR-SKGSKPVLKSQVPRWLTQH  155 (184)
T ss_pred             EeCCCc-CCCCchhHHHHHHHHHHhC
Confidence            999999 998 589999999999863

>KOG2401 consensus Predicted MutS-related protein involved in mismatch repair [Replication, recombination and repair]

Probab=98.20  E-value=1e-06  Score=91.47  Aligned_cols=383  Identities=15%  Similarity=0.059  Sum_probs=199.7

Q ss_pred             CCCCCCCCCCchhhhHHHHhhcCCCCCCCCCCCCCCCccccCCc-cccccccCCCCccCCcccccccCCCCCCccccccc
Q 015358            1 MSLTRVKSPGWAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLR-NCENVSRNTDVLVKPFSSVLRPSVEFPTLTEENEC   79 (408)
Q Consensus         1 m~~~~~~~~gw~afd~k~r~~~~~~~e~d~d~fp~~~~~~~~~~-~~~~~~~~~~~~~k~f~sv~~p~~~f~~~~~~~~~   79 (408)
                      |||+.....+|..|.+..+++...+.....|++|++.+.-...- -|.-+-.+..+....+++++.++..+++..+..+|
T Consensus        14 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~   93 (448)
T KOG2401|consen   14 MSLTLSLAAFSFSFKLVDLKAASEESSDEVDLGPPELSEMATSTSSADRLQYTIELLEPSPSSVSFESLRARASDENVDR   93 (448)
T ss_pred             ccchhccchhhhhhhhHhhhhcccccccccccCCCcchhhccccchhhhhcccccccCCCcccccccccccchhhhcccc
Confidence            78999999999999999999999999999999999988753333 23333356666888999999999999999999999


Q ss_pred             cccCCCC-------CccccccchHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhccCCCcccccccccCC
Q 015358           80 DYKGKHG-------HKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGSAEENKETKIAE  152 (408)
Q Consensus        80 ~~~~~~~-------~~~~~~~~~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~~~~~~~~~~~~~~~~  152 (408)
                      ++.+.-+       .....++....++.....+..|.....|.+..-.....+-....++..+.. .+..+......+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~f~~~~~~-~~~~~~~~~~~~~~  172 (448)
T KOG2401|consen   94 GNQERILDRSRNQVAGKLKVSFVEKKLNEEEPQKEINPDGRILPEDPSFEESFRVENGFDPGEAI-AFKIEDLPQKQVEG  172 (448)
T ss_pred             HHHHhhcccccccccccccccccccccCccccccccCCcccccccccchHHHHHHhccCccchhh-hcchhhhccccccc
Confidence            9998111       122223445566666666677766666555444333333333333332222 11111111001111


Q ss_pred             CCCCCCCCcccccCCchhhhhhhhhccccccccCCCcccCCcccccccccccccCCCcccchhhhhhhcCCCCCCCCccC
Q 015358          153 SSSTIDESPCYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRASSVINVSDKDDGMKSIMERLSSLPIEPEWEE  232 (408)
Q Consensus       153 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~sip~epewee  232 (408)
                      +-.  ++++..   .+  ....-++.......+++.+           ....+.... ..  +-+.......+..-.|..
T Consensus       173 ~~~--~n~~~~---~~--~~~~~d~~~~~~~~~~~~~-----------~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~  231 (448)
T KOG2401|consen  173 EDV--DNCKVK---NQ--ITNSSDSKMATEPGLNDSL-----------KKAYENVDS-SE--ESVELLRKEGFSVDVPSN  231 (448)
T ss_pred             ccc--ccceee---cc--ccccccccccccccccchh-----------hccccccCc-ch--hhhhhhccCCCCccCcch
Confidence            100  000000   00  0000011111111122211           111110000 00  000001111111111111


Q ss_pred             --------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 015358          233 --------DDVYLVHRKDAMKMMRSASQHSKAANNAYLRGDHFSAQQHSLKARKEWLIAERLNSKAAKEILGIRNSENDM  304 (408)
Q Consensus       233 --------d~~Y~~~RkeA~~~~r~R~~~~~~Aa~Af~rGd~~aAk~lS~kAr~~~~~ae~an~kAA~~If~~rN~~~~~  304 (408)
                              ...|...+.........+..++....-|+.-+.......++.+.+......+..+.++....|...+.....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~s~~~~  311 (448)
T KOG2401|consen  232 AEKNSAKRLEELQKSQPEEDKAKKLRDQLYKSKRPAGSGKCLRKRHELSDKPRGVLQAEDDYNADELSDEFGNKESIKSE  311 (448)
T ss_pred             hhcccccchhhcchhhhccchhhhHHHhhhhhcccccccchhhhhhhhhhhhhhhhhcccccchhhhhhhhhhhhhhhhh
Confidence                    233445555555555666666666667776666677777777777777777777777777776666666666


Q ss_pred             CceecCCCCHHHHHHHHHHHHHHHHhh------CCCCCCCCC-ccccccCC-cccccccccccccchhhhhhhhhhhhcc
Q 015358          305 WKLDLHGLHAAEAVQALQERLQKIEMQ------RPMNCSVSP-KKVKSKNG-MVCTASLESFGCMDMEVVDKQRSSLRQI  376 (408)
Q Consensus       305 ~~LDLHGLhv~EAv~iL~e~L~~i~~q------l~~~rs~sp-~~~~~~~g-~~~s~~~~~~~~~d~~~~~~q~~~~r~~  376 (408)
                      ..+|.|++.+..+.+.++..+......      ..+.+.... .+..+.++ ......-+.+..+...+..++.+.....
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~a~~~~~~~~~~~r~~~~~~~~~~i~~~~~  391 (448)
T KOG2401|consen  312 REIDNQRLYKKAAEQKAQPEIEDAINLQASELKPKVSLAVKGSYAVAKLKPATQWKLDNEEIERRSEVGEHGEKISELSR  391 (448)
T ss_pred             HHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhchhhhhcccccchhhhcchHHHHHHhhhhhhcccccccchhhhHhHhh
Confidence            677777766666655555444332100      000000000 00000011 0111111222333333444444445555


Q ss_pred             CccEEEEEccCCCCCCCCCcHHHHHHHHH
Q 015358          377 QKSLQVITGIGNHSRGQAALPTAVKNFLS  405 (408)
Q Consensus       377 ~~~L~VITG~G~HS~G~arL~pAV~~fL~  405 (408)
                      ...+.|++|+|.||.+.+++++++...+.
T Consensus       392 ~~~~qv~~~~~~~s~~~~~~~~~~~~~~~  420 (448)
T KOG2401|consen  392 RLKLQVLFGRGIHSRGEARLPRAEKRSYE  420 (448)
T ss_pred             hccccccccccccCccchhhhhhhhhhcc
Confidence            56789999999999999988888776544

>PRK04946 hypothetical protein; Provisional

Probab=98.03  E-value=6.6e-06  Score=76.98  Aligned_cols=56  Identities=25%  Similarity=0.262  Sum_probs=46.8

Q ss_pred             CCCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEE
Q 015358          303 DMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQV  382 (408)
Q Consensus       303 ~~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~V  382 (408)
                      ....|||||+++.||...|.++|......                                            +...+.|
T Consensus        94 ~~~~LDLhG~~~eeA~~~L~~fl~~a~~~--------------------------------------------g~r~v~I  129 (181)
T PRK04946         94 PELFLDLHGLTQLQAKQELGALIAACRKE--------------------------------------------HVFCACV  129 (181)
T ss_pred             CceEEECCCCCHHHHHHHHHHHHHHHHHc--------------------------------------------CCCEEEE
Confidence            46799999999999999999999986421                                            1237999


Q ss_pred             EEccCCCCCCCCCcHHHHHHHHHhc
Q 015358          383 ITGIGNHSRGQAALPTAVKNFLSES  407 (408)
Q Consensus       383 ITG~G~HS~G~arL~pAV~~fL~e~  407 (408)
                      |+|+|.     +.|+..|..||.+.
T Consensus       130 IHGkG~-----gvLk~~V~~wL~q~  149 (181)
T PRK04946        130 MHGHGK-----HILKQQTPLWLAQH  149 (181)
T ss_pred             EcCCCH-----hHHHHHHHHHHcCC
Confidence            999985     69999999999753

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=97.23  E-value=0.00039  Score=77.40  Aligned_cols=55  Identities=27%  Similarity=0.431  Sum_probs=45.8

Q ss_pred             CCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEEE
Q 015358          304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVI  383 (408)
Q Consensus       304 ~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~VI  383 (408)
                      ..+|||||+++.||+..|+.+|.....                                            .+...++||
T Consensus       704 ~~~lDL~G~~~eeA~~~l~~fl~~a~~--------------------------------------------~g~~~v~II  739 (782)
T PRK00409        704 SLELDLRGMRYEEALERLDKYLDDALL--------------------------------------------AGYGEVLII  739 (782)
T ss_pred             CceEECCCCCHHHHHHHHHHHHHHHHH--------------------------------------------cCCCEEEEE
Confidence            568999999999999999999998532                                            122479999


Q ss_pred             EccCCCCCCCCCcHHHHHHHHHhc
Q 015358          384 TGIGNHSRGQAALPTAVKNFLSES  407 (408)
Q Consensus       384 TG~G~HS~G~arL~pAV~~fL~e~  407 (408)
                      +|+|.     ..|+.+|..||.++
T Consensus       740 HGkGt-----G~Lr~~v~~~L~~~  758 (782)
T PRK00409        740 HGKGT-----GKLRKGVQEFLKKH  758 (782)
T ss_pred             cCCCh-----hHHHHHHHHHHcCC
Confidence            99974     59999999999864

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=97.13  E-value=0.0011  Score=47.70  Aligned_cols=40  Identities=23%  Similarity=0.371  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358           96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM  135 (408)
Q Consensus        96 ~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m  135 (408)
                      +..++.|++|||-.+.+.|+.+|.+.++|++.|+..|-.|
T Consensus         2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~   41 (42)
T PF02845_consen    2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEM   41 (42)
T ss_dssp             HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            3568999999999999999999999999999999988765

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>TIGR01069 mutS2 MutS2 family protein

Probab=96.96  E-value=0.001  Score=74.09  Aligned_cols=55  Identities=25%  Similarity=0.386  Sum_probs=45.6

Q ss_pred             CCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEEE
Q 015358          304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVI  383 (408)
Q Consensus       304 ~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~VI  383 (408)
                      ...|||||+++.||+..|+.+|.....                                            .+...++||
T Consensus       693 ~~~ldl~G~~~~eA~~~l~~~ld~a~~--------------------------------------------~g~~~v~II  728 (771)
T TIGR01069       693 SLTLDLRGQRSEEALDRLEKFLNDALL--------------------------------------------AGYEVVLII  728 (771)
T ss_pred             CceEECCCCCHHHHHHHHHHHHHHHHH--------------------------------------------CCCCEEEEE
Confidence            458999999999999999999998632                                            112379999


Q ss_pred             EccCCCCCCCCCcHHHHHHHHHhc
Q 015358          384 TGIGNHSRGQAALPTAVKNFLSES  407 (408)
Q Consensus       384 TG~G~HS~G~arL~pAV~~fL~e~  407 (408)
                      +|+|.     ..|+.+|..||.++
T Consensus       729 HGkGt-----G~Lr~~v~~~L~~~  747 (771)
T TIGR01069       729 HGKGS-----GKLRKGVQELLKNH  747 (771)
T ss_pred             cCCCh-----hHHHHHHHHHhcCC
Confidence            99974     57999999999864

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=96.61  E-value=0.0043  Score=44.70  Aligned_cols=40  Identities=28%  Similarity=0.339  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358           96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM  135 (408)
Q Consensus        96 ~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m  135 (408)
                      ...++.|++|||-++..+|+.+|.+.+||++.|+..|-.|
T Consensus         3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~   42 (43)
T smart00546        3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG   42 (43)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence            3468899999999999999999999999999999877654

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=93.09  E-value=0.26  Score=34.45  Aligned_cols=36  Identities=14%  Similarity=0.278  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHH
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL  132 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L  132 (408)
                      .+-.+++|++|  +.+.+.....|.+++||+++|+..|
T Consensus         2 ~~~~v~~L~~m--Gf~~~~~~~AL~~~~~nve~A~~~L   37 (37)
T PF00627_consen    2 DEEKVQQLMEM--GFSREQAREALRACNGNVERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHH--TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence            35679999999  8999999999999999999999887

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>cd00194 UBA Ubiquitin Associated domain

Probab=86.54  E-value=1.7  Score=29.99  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=30.9

Q ss_pred             HHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHH
Q 015358           97 LALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE  133 (408)
Q Consensus        97 ~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~  133 (408)
                      ..+++|.+|  +.+.+.+..+|.+++||+++|...|-
T Consensus         3 ~~v~~L~~m--Gf~~~~~~~AL~~~~~d~~~A~~~L~   37 (38)
T cd00194           3 EKLEQLLEM--GFSREEARKALRATNNNVERAVEWLL   37 (38)
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            478899998  57799999999999999999998873

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=86.17  E-value=1.7  Score=29.79  Aligned_cols=35  Identities=14%  Similarity=0.235  Sum_probs=31.2

Q ss_pred             HHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHH
Q 015358           96 DLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL  132 (408)
Q Consensus        96 ~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L  132 (408)
                      .-++++|++|  +.+.+.+..+|.+++||+++|+..|
T Consensus         2 ~~~v~~L~~m--Gf~~~~a~~aL~~~~~d~~~A~~~L   36 (37)
T smart00165        2 EEKIDQLLEM--GFSREEALKALRAANGNVERAAEYL   36 (37)
T ss_pred             HHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            3468899999  7899999999999999999999876

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []

Probab=81.72  E-value=3.1  Score=30.55  Aligned_cols=35  Identities=14%  Similarity=0.307  Sum_probs=31.9

Q ss_pred             HHHHHHHhccccchHHHHHHHHHhhccHHHHHHHH
Q 015358           98 ALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL  132 (408)
Q Consensus        98 ~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L  132 (408)
                      .++-|...||.-..+.++-||..+++|+-+|.+.+
T Consensus         4 pidiL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~   38 (39)
T PF03474_consen    4 PIDILTRVFPHQKRSVLELILQRCNGDVVQAIEQF   38 (39)
T ss_pred             HHHHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence            46789999999999999999999999999998754

DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
2vkc_A	135	NEDD4-binding protein 2; human BCL3 binding protei	1e-17
2d9i_A	96	NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3	2e-10
3fau_A	82	NEDD4-binding protein 2; SMR, small-MUTS related d	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1 Length = 96

 Score = 56.0 bits (135), Expect = 2e-10
 Identities = 26/111 (23%), Positives = 36/111 (32%), Gaps = 40/111 (36%)

Query: 299 NSENDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESF 358
           +  +    LDLHGLH  EA++ L   L+K                               
Sbjct: 3   SGSSGQNVLDLHGLHVDEALEHLMRVLEKKT----------------------------- 33

Query: 359 GCMDMEVVDKQRSSLRQIQKSLQVITGIGNHSR-GQAALPTAVKNFLSESG 408
                     +       +  L VITG GNHS+ G A +  AV  +L    
Sbjct: 34  ----------EEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHS 74

>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} Length = 82

 Score = 53.3 bits (128), Expect = 2e-09
 Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 40/103 (38%)

Query: 307 LDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVV 366
           LDLHGLH  EA++ L   L+K                                       
Sbjct: 3   LDLHGLHVDEALEHLMRVLEKKT------------------------------------- 25

Query: 367 DKQRSSLRQIQKSLQVITGIGNHSR-GQAALPTAVKNFLSESG 408
             +       +  L VITG GNHS+ G A +  AV  +L    
Sbjct: 26  --EEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHS 66

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 7e-06
 Identities = 67/420 (15%), Positives = 131/420 (31%), Gaps = 130/420 (30%)

Query: 6   VKSPG-WAAFDLKQRQKQGLAPETDKDSYPPISSTLTSLRNCENVSRNTDVLVKPFSSVL 64
           V++   W AF+L  +                    L + R      + TD L    ++ +
Sbjct: 253 VQNAKAWNAFNLSCK-------------------ILLTTRF----KQVTDFLSAATTTHI 289

Query: 65  RPSVEFPTLTEENECDYKGKHGHKAIEQHSRDLALKKLK----ALHSWADNSLIEDLMEA 120
                  TLT +           K ++   +DL  + L      L      S+I    E+
Sbjct: 290 SLDHHSMTLTPDEVKSLLL----KYLDCRPQDLPREVLTTNPRRL------SIIA---ES 336

Query: 121 VDNDIKRASNLLEGMVSSSGSAEENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSN 180
           + + +    N              +K T I ESS  + E   YRK     F   ++    
Sbjct: 337 IRDGLATWDNWKH--------VNCDKLTTIIESSLNVLEPAEYRK----MFDRLSV---- 380

Query: 181 LSTTTGDGVNDNFIESVDVRASSVINV----SDKDDGMKSIMERL--SSLPIEPEWEED- 233
                       F  S  +  + ++++      K D M  ++ +L   SL +E + +E  
Sbjct: 381 ------------FPPSAHI-PTILLSLIWFDVIKSDVM-VVVNKLHKYSL-VEKQPKEST 425

Query: 234 ----DVYL-----------VHRK--DAMKMMRSASQHSKAANNA------YLRGDHFSAQ 270
                +YL           +HR   D   + ++                 ++ G H    
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI-GHHLKNI 484

Query: 271 QHSLKA---RK-----EWLIAE-RLNSKAAKEILGIRNSENDMWKLDLHGLHAAEAVQAL 321
           +H  +    R       +L  + R +S A      I N+      L  +  +  +     
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ---LKFYKPYICDNDPKY 541

Query: 322 QERLQKIE--MQRPMNCSVSPKKVKSKNGMVCTASLESFGCM-DMEVVDKQRSSLRQIQK 378
           +  +  I   + +          + SK        L     M + E + ++  + +Q+Q+
Sbjct: 542 ERLVNAILDFLPKI-----EENLICSKY-----TDLLRIALMAEDEAIFEE--AHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 49/364 (13%), Positives = 91/364 (25%), Gaps = 134/364 (36%)

Query: 85  HGHKAIEQHSRDLALKKLKALHSWADNSLIEDLMEAV--DNDIKRASNLLEGMVSSSGSA 142
           H H     H  D    + +  + + D  ++    +A   + D K   ++ + ++S     
Sbjct: 1   HHH----HHHMDFETGEHQ--YQYKD--ILSVFEDAFVDNFDCKDVQDMPKSILSK---- 48

Query: 143 EENKETKIAESSSTIDESPCYRKGGEICFLEKALDLSNLSTTTGDGVNDNFIESVDVRAS 202
           EE     I  S      S   R       L K            + +   F+E V     
Sbjct: 49  EEIDH--IIMSKD--AVSGTLRLFW--TLLSK-----------QEEMVQKFVEEVL---- 87

Query: 203 SVINVSDKDDGMKSIMERLSSLPIEPEWEEDDVYLVHRKDAMKMMRSASQHSKAANNAYL 262
                       K +M  + +   +P               M       Q  +  N+  +
Sbjct: 88  --------RINYKFLMSPIKTEQRQPS--------------MMTRMYIEQRDRLYNDNQV 125

Query: 263 RGDHFSAQQHSLKAR----------------------KEWLIAERLNSKAAKEI------ 294
              +  ++                             K W+  +   S   +        
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 295 ---LGIRNSEND----MWKL-----------DLHGLHAAEAVQALQERLQKIEMQRPM-N 335
              L   NS       + KL             H  +    + ++Q  L+++   +P  N
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 336 C-----SVSPKKVKSKNGMVCTASLESF--GC------MDMEVVD------KQRSSLRQI 376
           C     +V   K              +F   C         +V D          SL   
Sbjct: 246 CLLVLLNVQNAKA-----------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 377 QKSL 380
             +L
Sbjct: 295 SMTL 298

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
2vkc_A	135	NEDD4-binding protein 2; human BCL3 binding protei	99.83
3fau_A	82	NEDD4-binding protein 2; SMR, small-MUTS related d	99.48
2d9i_A	96	NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3	99.42
3qd7_X	137	Uncharacterized protein YDAL; alpha/beta/alpha fol	98.92
2zqe_A	83	MUTS2 protein; alpha/beta, ATP-binding, DNA-bindin	98.58
2dhy_A	67	CUE domain-containing protein 1; structural genomi	97.76
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	97.66
1p3q_Q	54	VPS9P, vacuolar protein sorting-associated protein	97.1
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	97.06
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	90.09
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	87.8
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	84.66
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	84.22
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	83.41
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	83.29
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	82.31
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	81.8
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	80.58
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	80.1

>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1

Probab=99.48  E-value=4.3e-14  Score=113.23  Aligned_cols=64  Identities=41%  Similarity=0.521  Sum_probs=45.1

Q ss_pred             ceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEEEEc
Q 015358          306 KLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVITG  385 (408)
Q Consensus       306 ~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~VITG  385 (408)
                      +|||||+++.||+.+|+++|..+...+.                                       ...+...+.||||
T Consensus         2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~---------------------------------------~~~g~~~v~II~G   42 (82)
T 3fau_A            2 SLDLHGLHVDEALEHLMRVLEKKTEEFK---------------------------------------QNGGKPYLSVITG   42 (82)
T ss_dssp             CEECTTSCHHHHHHHHHHHHHHHHHHHH---------------------------------------HHCCCCEEEEECC
T ss_pred             eEECCCCcHHHHHHHHHHHHHHHHHHhh---------------------------------------ccCCceEEEEEEC
Confidence            7999999999999999999998753210                                       0012247999999


Q ss_pred             cCCCCCC-CCCcHHHHHHHHHhcC
Q 015358          386 IGNHSRG-QAALPTAVKNFLSESG  408 (408)
Q Consensus       386 ~G~HS~G-~arL~pAV~~fL~e~G  408 (408)
                      +|+||.+ .++||++|.+||.+++
T Consensus        43 kG~hS~~g~~~Lk~~V~~~L~~~~   66 (82)
T 3fau_A           43 RGNHSQGGVARIKPAVIKYLISHS   66 (82)
T ss_dssp             C---------CHHHHHHHHHHHTT
T ss_pred             CCCCCCCCcchHHHHHHHHHHhCC
Confidence            9999995 5899999999999874

>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1

Probab=99.42  E-value=3.5e-13  Score=110.80  Aligned_cols=68  Identities=40%  Similarity=0.485  Sum_probs=54.1

Q ss_pred             CCCCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEE
Q 015358          302 NDMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQ  381 (408)
Q Consensus       302 ~~~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~  381 (408)
                      ....+|||||+++.||+.+|+++|..+....                                   .    ...+...|.
T Consensus         6 ~~~~~lDLHGl~v~eA~~~L~~~L~~~~~~~-----------------------------------~----~~~g~~~v~   46 (96)
T 2d9i_A            6 SGQNVLDLHGLHVDEALEHLMRVLEKKTEEF-----------------------------------K----QNGGKPYLS   46 (96)
T ss_dssp             CSCCEEECTTSCHHHHHHHHHHHHHHHHHHH-----------------------------------H----HTTCCSEEE
T ss_pred             CCCCeEECCCCCHHHHHHHHHHHHHHHHHHH-----------------------------------H----hhCCCeEEE
Confidence            4678999999999999999999999763210                                   0    001124799


Q ss_pred             EEEccCCCCCCC-CCcHHHHHHHHHhcC
Q 015358          382 VITGIGNHSRGQ-AALPTAVKNFLSESG  408 (408)
Q Consensus       382 VITG~G~HS~G~-arL~pAV~~fL~e~G  408 (408)
                      ||||+|+||.++ ++||++|..||.+++
T Consensus        47 IIhGkG~hS~~g~~~Lk~~V~~~L~~~~   74 (96)
T 2d9i_A           47 VITGRGNHSQGGVARIKPAVIKYLISHS   74 (96)
T ss_dssp             EECCCSGGGTTCTTCHHHHHHHHHHHTT
T ss_pred             EEECcCCCCCCCcchHHHHHHHHHhhCC
Confidence            999999999955 899999999999864

>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}

Probab=98.92  E-value=7.8e-10  Score=97.41  Aligned_cols=61  Identities=16%  Similarity=0.205  Sum_probs=52.0

Q ss_pred             CCCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEE
Q 015358          303 DMWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQV  382 (408)
Q Consensus       303 ~~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~V  382 (408)
                      ...+|||||+++.||...|..+|......                                            +...+.|
T Consensus        46 ~~~~LDLHG~~~~EA~~~L~~fL~~a~~~--------------------------------------------g~r~V~I   81 (137)
T 3qd7_X           46 QQASLNLLRQPVEECRKMVFSFIQQALAD--------------------------------------------GLRNVLI   81 (137)
T ss_dssp             GGGEEECTTCCHHHHHHHHHHHHHHHHHT--------------------------------------------TCSEEEE
T ss_pred             CCeEEECCCCCHHHHHHHHHHHHHHHHHC--------------------------------------------CCCEEEE
Confidence            46799999999999999999999986321                                            1237999


Q ss_pred             EEccCCCCCCC-CCcHHHHHHHHHhc
Q 015358          383 ITGIGNHSRGQ-AALPTAVKNFLSES  407 (408)
Q Consensus       383 ITG~G~HS~G~-arL~pAV~~fL~e~  407 (408)
                      |||+|.||.+. +.|+.+|..||.++
T Consensus        82 IHGKG~gs~~~~~vLk~~V~~wL~~~  107 (137)
T 3qd7_X           82 IHGKGRDDKSHANIVRSYVARWLTEF  107 (137)
T ss_dssp             ECCCCSSTTSHHHHHHHHHHHHHHTS
T ss_pred             EECCCCCCCCchHHHHHHHHHHHhcC
Confidence            99999999865 69999999999874

>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}

Probab=98.58  E-value=7.8e-08  Score=77.78  Aligned_cols=55  Identities=27%  Similarity=0.436  Sum_probs=46.4

Q ss_pred             CCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEEE
Q 015358          304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVI  383 (408)
Q Consensus       304 ~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~VI  383 (408)
                      ..+|||||++++||...|+.+|......                                            +...+.||
T Consensus         4 ~~~lDLhG~~~~eA~~~l~~fl~~a~~~--------------------------------------------g~~~v~II   39 (83)
T 2zqe_A            4 VKEVDLRGLTVAEALLEVDQALEEARAL--------------------------------------------GLSTLRLL   39 (83)
T ss_dssp             CCEEECTTCCHHHHHHHHHHHHHHHHHT--------------------------------------------TCSEEEEE
T ss_pred             ccEEECCCCCHHHHHHHHHHHHHHHHHC--------------------------------------------CCCEEEEE
Confidence            4789999999999999999999986321                                            12379999


Q ss_pred             EccCCCCCCCCCcHHHHHHHHHhc
Q 015358          384 TGIGNHSRGQAALPTAVKNFLSES  407 (408)
Q Consensus       384 TG~G~HS~G~arL~pAV~~fL~e~  407 (408)
                      +|+|.     ..||.+|..||.++
T Consensus        40 HGkG~-----GvLr~~V~~~L~~~   58 (83)
T 2zqe_A           40 HGKGT-----GALRQAIREALRRD   58 (83)
T ss_dssp             CCSTT-----SHHHHHHHHHHHHC
T ss_pred             ECCCc-----hHHHHHHHHHHhcC
Confidence            99986     48999999999874

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.76  E-value=4.1e-05  Score=60.22  Aligned_cols=47  Identities=21%  Similarity=0.264  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhccCCC
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSSGS  141 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~~~~~  141 (408)
                      ...+++.|++|||-+|..+|+.||.++++|++.|+..|..|..+...
T Consensus        18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~~   64 (67)
T 2dhy_A           18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESGP   64 (67)
T ss_dssp             SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCCC
Confidence            56789999999999999999999999999999999999999775443

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=97.66  E-value=4.6e-05  Score=58.42  Aligned_cols=45  Identities=22%  Similarity=0.260  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhccC
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSSS  139 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~~~  139 (408)
                      .+-.++.|++|||-+|..+|+.||.+++||++.|+..|..|..+.
T Consensus         9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~   53 (59)
T 1wgl_A            9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP   53 (59)
T ss_dssp             CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred             CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence            567899999999999999999999999999999999999996543

>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A

Probab=97.10  E-value=0.00015  Score=54.99  Aligned_cols=42  Identities=29%  Similarity=0.306  Sum_probs=32.4

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhh
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMV  136 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~  136 (408)
                      ....++.|++|||-+|.++|++|+.+-+++++.|+..|-.|.
T Consensus        12 ~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqms   53 (54)
T 1p3q_Q           12 RKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLS   53 (54)
T ss_dssp             HHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC------
T ss_pred             HHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence            567899999999999999999999999999999999998884

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=97.06  E-value=0.00074  Score=50.10  Aligned_cols=43  Identities=16%  Similarity=0.111  Sum_probs=39.9

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhc
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVS  137 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~  137 (408)
                      .+-.++.|.+|||-++...|+-+|.+.+||++.|+..|-.|.+
T Consensus         4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~   46 (49)
T 1otr_A            4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND   46 (49)
T ss_dssp             HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence            4678999999999999999999999999999999999998844

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=90.09  E-value=0.54  Score=31.81  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=32.2

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHH
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLL  132 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L  132 (408)
                      .+.++++|++|  +.+.+....+|.++++|++.|+..|
T Consensus         4 ~~~~i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L   39 (40)
T 1z96_A            4 LNSKIAQLVSM--GFDPLEAAQALDAANGDLDVAASFL   39 (40)
T ss_dssp             HHHHHHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            45589999999  7788999999999999999999887

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=87.80  E-value=0.8  Score=31.91  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHH
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE  133 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~  133 (408)
                      .+.++++|.+|  +.+.+.+...|.+++||++.|+..|-
T Consensus         4 ~e~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~~~L~   40 (43)
T 2g3q_A            4 KSLAVEELSGM--GFTEEEAHNALEKCNWDLEAATNFLL   40 (43)
T ss_dssp             HHHHHHHHHTT--TSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence            45689999999  47888999999999999999999884

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=84.66  E-value=1.1  Score=35.34  Aligned_cols=38  Identities=26%  Similarity=0.361  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG  134 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~  134 (408)
                      .+.++++|.+|  ..+.+.+...|.+++||+++|+.+|-.
T Consensus        29 ~ee~I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~   66 (73)
T 1vg5_A           29 SEEQIQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS   66 (73)
T ss_dssp             CHHHHHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             cHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            56789999999  479999999999999999999999864

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=84.22  E-value=1.8  Score=31.77  Aligned_cols=38  Identities=21%  Similarity=0.185  Sum_probs=33.6

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHH
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE  133 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~  133 (408)
                      -+.++++|++|- +-|.+.+..+|.+++||+++|+..|-
T Consensus        12 ~~~~l~~L~~MG-F~~~~~~~~AL~~t~gn~e~A~e~L~   49 (52)
T 2jy5_A           12 FQQQLEQLSAMG-FLNREANLQALIATGGDINAAIERLL   49 (52)
T ss_dssp             THHHHHHHHHTT-CCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence            567899999993 44999999999999999999999884

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=83.41  E-value=1.6  Score=31.30  Aligned_cols=39  Identities=13%  Similarity=0.135  Sum_probs=32.5

Q ss_pred             chHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHH
Q 015358           94 SRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLE  133 (408)
Q Consensus        94 ~~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~  133 (408)
                      .-+..+++|++|- --|...+..+|.++++|+++|+..|-
T Consensus         6 ~~~~~i~~L~~MG-F~d~~~~~~AL~~~~gnv~~Ave~L~   44 (46)
T 2bwb_A            6 RYEHQLRQLNDMG-FFDFDRNVAALRRSGGSVQGALDSLL   44 (46)
T ss_dssp             HTHHHHHHHHHTT-CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence            3567899999993 34777888999999999999999884

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=83.29  E-value=1.6  Score=32.02  Aligned_cols=39  Identities=21%  Similarity=0.235  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG  134 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~  134 (408)
                      -+.++++|++|- +-|.+.+..+|.+++||+++|+..|-.
T Consensus        11 ~~~~l~~L~~MG-F~~~~~~~~AL~~t~gnve~Ave~L~~   49 (53)
T 2knz_A           11 FQQQLEQLNSMG-FINREANLQALIATGGDINAAIERLLG   49 (53)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            466799999993 449999999999999999999999864

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=82.31  E-value=2.2  Score=31.61  Aligned_cols=40  Identities=15%  Similarity=0.234  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM  135 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m  135 (408)
                      -+-.+++|++| ..-|...+..+|.++++|+++|+..|-..
T Consensus         9 ~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~   48 (54)
T 2dah_A            9 FQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQS   48 (54)
T ss_dssp             SHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            46689999999 35577888899999999999999999765

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=81.80  E-value=1.8  Score=33.10  Aligned_cols=39  Identities=18%  Similarity=0.181  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhh
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGM  135 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m  135 (408)
                      .+.++++|.+|  ..+.+.+...|.+++||+++|+..|-.-
T Consensus         9 ~~~~I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~~   47 (63)
T 1wji_A            9 DEKALKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTS   47 (63)
T ss_dssp             CHHHHHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            56789999999  5788899999999999999999998654

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=80.58  E-value=1.6  Score=31.49  Aligned_cols=38  Identities=16%  Similarity=0.150  Sum_probs=33.8

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG  134 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~  134 (408)
                      .+.++++|.+|  +.+.+.+...|.+++||+++|+..|-.
T Consensus         8 ~~~~i~~L~~M--GF~~~~a~~AL~~~~~n~e~A~e~L~~   45 (49)
T 1ify_A            8 YETMLTEIMSM--GYERERVVAALRASYNNPHRAVEYLLT   45 (49)
T ss_dssp             HHHHHHHHHHT--TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred             CHHHHHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            56789999999  369999999999999999999999854

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=80.10  E-value=2.4  Score=32.00  Aligned_cols=41  Identities=12%  Similarity=0.135  Sum_probs=33.9

Q ss_pred             cchHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHh
Q 015358           93 HSRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEG  134 (408)
Q Consensus        93 ~~~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~  134 (408)
                      ..-+..+++|++|- --|.+.+..+|.++++|+++|+..|-.
T Consensus        15 ~~~~~qi~~L~~MG-F~d~~~~~~AL~~~~gnve~Ave~L~~   55 (58)
T 1wr1_B           15 ERYEHQLRQLNDMG-FFDFDRNVAALRRSGGSVQGALDSLLN   55 (58)
T ss_dssp             HHTHHHHHHHHHHT-CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            33567899999993 357888889999999999999998853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d2d9ia1	83	d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (	5e-06

>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SMR domain-like
family: Smr domain
domain: Nedd4-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 5e-06
 Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 40/103 (38%)

Query: 307 LDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVV 366
           LDLHGLH  EA++ L   L+K   +   N                               
Sbjct: 4   LDLHGLHVDEALEHLMRVLEKKTEEFKQN------------------------------- 32

Query: 367 DKQRSSLRQIQKSLQVITGIGNHSR-GQAALPTAVKNFLSESG 408
                     +  L VITG GNHS+ G A +  AV  +L    
Sbjct: 33  --------GGKPYLSVITGRGNHSQGGVARIKPAVIKYLISHS 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d2d9ia1	83	Nedd4-binding protein 2 {Human (Homo sapiens) [Tax	99.58
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	97.73
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	97.61

>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SMR domain-like
family: Smr domain
domain: Nedd4-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-15  Score=121.07  Aligned_cols=66  Identities=39%  Similarity=0.473  Sum_probs=53.7

Q ss_pred             CCceecCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCccccccCCcccccccccccccchhhhhhhhhhhhccCccEEEE
Q 015358          304 MWKLDLHGLHAAEAVQALQERLQKIEMQRPMNCSVSPKKVKSKNGMVCTASLESFGCMDMEVVDKQRSSLRQIQKSLQVI  383 (408)
Q Consensus       304 ~~~LDLHGLhv~EAv~iL~e~L~~i~~ql~~~rs~sp~~~~~~~g~~~s~~~~~~~~~d~~~~~~q~~~~r~~~~~L~VI  383 (408)
                      +..|||||+|+.||+++|+++|..++..+.                                       .......|+||
T Consensus         1 q~~iDLHG~~~~eA~~~l~~~l~~~~~~~~---------------------------------------~~~~~~~l~II   41 (83)
T d2d9ia1           1 QNVLDLHGLHVDEALEHLMRVLEKKTEEFK---------------------------------------QNGGKPYLSVI   41 (83)
T ss_dssp             CCEEECTTSCHHHHHHHHHHHHHHHHHHHH---------------------------------------HTTCCSEEEEE
T ss_pred             CCeEECCCCCHHHHHHHHHHHHHHHHHhhh---------------------------------------hcCCceEEEEE
Confidence            368999999999999999999998754210                                       01123479999


Q ss_pred             EccCCCCC-CCCCcHHHHHHHHHhcC
Q 015358          384 TGIGNHSR-GQAALPTAVKNFLSESG  408 (408)
Q Consensus       384 TG~G~HS~-G~arL~pAV~~fL~e~G  408 (408)
                      ||+|+||. |.++|+++|.+||.+++
T Consensus        42 tG~G~hS~~g~~~lk~~V~~~L~~~~   67 (83)
T d2d9ia1          42 TGRGNHSQGGVARIKPAVIKYLISHS   67 (83)
T ss_dssp             CCCSGGGTTCTTCHHHHHHHHHHHTT
T ss_pred             ECCCCCCCCCcchHHHHHHHHHHHCC
Confidence            99999999 55899999999999875

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.4e-05  Score=59.76  Aligned_cols=44  Identities=23%  Similarity=0.262  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhhcc
Q 015358           95 RDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMVSS  138 (408)
Q Consensus        95 ~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~~~  138 (408)
                      .+..++.|++|||-+|.++|+.||.+.+++++.|+..|-.|..+
T Consensus         9 ~Ee~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL~Msd~   52 (59)
T d1wgla_           9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE   52 (59)
T ss_dssp             CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred             cHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence            34569999999999999999999999999999999999999553

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=1.9e-05  Score=58.03  Aligned_cols=43  Identities=28%  Similarity=0.310  Sum_probs=40.0

Q ss_pred             chHHHHHHHHHhccccchHHHHHHHHHhhccHHHHHHHHHhhh
Q 015358           94 SRDLALKKLKALHSWADNSLIEDLMEAVDNDIKRASNLLEGMV  136 (408)
Q Consensus        94 ~~~~~~~kL~~~~~wad~~li~dv~~a~~nd~~~a~~~L~~m~  136 (408)
                      .....++.|++|||-+|.++|++||.+.+++++.|+..|-.|.
T Consensus        11 e~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL~Ms   53 (54)
T d1mn3a_          11 ERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALLSLS   53 (54)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcc
Confidence            3567899999999999999999999999999999999999984