Citrus Sinensis ID: 015359

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MGNKLGRRRQVVDEKYTRPQGLYVHKDVDIKKLRKLILESKLAPCYPGDEDCCCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYAVEYRGVKTKEEKGMEQIEEQRVIEAKIRIRQQELQDDEERMLKRQESSSMGIALGEVESSVSSSRSVEGEGNVSFQDLCATPMVRQPSHRRANGDDEFDLDLEDIMVMEAIWLSIQENGRQRNPTYEEAAPSEQYVTEDRYVSSTMAPIAGSSSSPSGGLACAIAALAERQQVSGESSINHGGNMSSFNMFPGSSRLYNRMDHDVENYAPAESLINTSPDGRMTVARDEGEWGIDRGSELAEAGTSYASSDMAEDGGGISSLPEDGGPIVPESFEEQMMLAMAASLAEARPMSNGPEVSWQ
cccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccc
ccccccccccccccHccccccccccccccHHHHHHHHHHcccccccccccHcccccccccEEEEEcccccccHccccccccEEEEEEcccccccccccccccccccEEEEcccccHHHHcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccEEcccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHHHHcccccccccHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccc
mgnklgrrrqvvdekytrpqglyvhkdvdIKKLRKLILEsklapcypgdedcccdleecpicflyypslnrsrccmkgictecflqmknpnttrptqcpfcktanYAVEYRGVKTKEEKGMEQIEEQRVIEAKIRIRQQELQDDEERMLKRQESSSMGIALGEVESSvsssrsvegegnvsfqdlcatpmvrqpshrrangddefdldLEDIMVMEAIWLSIQengrqrnptyeeaapseqyvtedryvsstmapiagsssspsgGLACAIAALAERQqvsgessinhggnmssfnmfpgssrlynrmdhdvenyapaeslintspdgrmtvardegewgidrgselaeagtsyassdmaedgggisslpedggpivpeSFEEQMMLAMAASLAearpmsngpevswq
mgnklgrrrqvvdekytrpqglyvhkdvdikKLRKLILESKLAPCYPGDEDCCCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYAVEYRGVktkeekgmeqieeQRVIEAKIRIRQQELQDDEERMLkrqesssmgialGEVESSVSSSRSVEGEGNVSFQDLCATPmvrqpshrrangdDEFDLDLEDIMVMEAIWLSIqengrqrnptyeeaapseqyvTEDRYVSSTMAPIAGSSSSPSGGLACAIAALAERQQVSGEssinhggnmssFNMFPGSSRLYNRMDHDVENYAPaeslintspdgrMTVARDEGEWGIDRGSELAEAGTSYASSDMAEDGGGISSLPEDGGPIVPESFEEQMMLAMAASLAearpmsngpevswq
MGNKLGRRRQVVDEKYTRPQGLYVHKDVDIKKLRKLILESKLAPCYPGdedcccdleecPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYAVEYRGVKTKEEKGMEQIEEQRVIEAKIRIRQQELQDDEERMLKRQESSSMGIALgevessvsssrsvegegnvsFQDLCATPMVRQPSHRRANGDDEFDLDLEDIMVMEAIWLSIQENGRQRNPTYEEAAPSEQYVTEDRYVSSTMAPIAgsssspsggLACAIAALAERQQVSGESSINHGGNMSSFNMFPGSSRLYNRMDHDVENYAPAESLINTSPDGRMTVARDEGEWGIDRGSELAEAGTSYASSDMAEDGGGISSLPEDGGPIVPESFeeqmmlamaaslaeaRPMSNGPEVSWQ
***************YTRPQGLYVHKDVDIKKLRKLILESKLAPCYPGDEDCCCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYAVEYRGV*******************************************************************************************FDLDLEDIMVMEAIWLSIQ********************************************ACAIA****************************************************************************************************************************************
********************GLYVHKDVDIKKLRKLILESKLAPCYPGDEDCCCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMK****TRPTQCPFCKTANYAVE********************************************************************************************************************************************************************************************************************************************************************************EEQMMLAMAA*****************
*********QVVDEKYTRPQGLYVHKDVDIKKLRKLILESKLAPCYPGDEDCCCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYAVEYRGVKTKEEKGMEQIEEQRVIEAKIRIRQQELQDDEERMLKRQESSSMGIAL*****************NVSFQDLCATPMVRQPSHRRANGDDEFDLDLEDIMVMEAIWLSIQENGRQRNPTYEEAAPSEQYVTEDRYVSSTMAP**********GLACAIAALAERQQVSGESSINHGGNMSSFNMFPGSSRLYNRMDHDVENYAPAESLINTSPDGRMTVARDEGEWGIDRGSELAEAGTSYASSDMAEDGGGISSLPEDGGPIVPESFEEQMMLAMAASLAEA************
*************EKYTRPQGLYVHKDVDIKKLRKLILESKLAPCYPGDEDCCCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYAVEYRGVKTKEEKGMEQIEEQRVIEAKIRIRQQELQDD**********************************************************DEFDLDLEDIMVMEAIWLSIQENG****************************************LACAIAALAERQ*************MSSFNMFPGSSRLY*RM********************R*TVARDEGEWGIDRGSELAEAGTSY*SSDMAEDGGGISSL*E*GG*IVPE******MLAM*******************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGNKLGRRRQVVDEKYTRPQGLYVHKDVDIKKLRKLILESKLAPCYPGDEDCCCDLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYAVEYRGVKTKEEKGMEQIEEQRVIEAKIRIRQQELQDDEERMLKRQESSSMGIALGEVESSVSSSRSVEGEGNVSFQDLCATPMVRQPSHRRANGDDEFDLDLEDIMVMEAIWLSIQENGRQRNPTYEEAAPSEQYVTEDRYVSSTMAPIAGSSSSPSGGLACAIAALAERQQVSGESSINHGGNMSSFNMFPGSSRLYNRMDHDVENYAPAESLINTSPDGRMTVARDEGEWGIDRGSELAEAGTSYASSDMAEDGGGISSLPEDGGPIVPESFEEQMMLAMAASLAEARPMSNGPEVSWQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query408 2.2.26 [Sep-21-2011]
A5DQJ8433 Protein SIP5 OS=Meyerozym N/A no 0.137 0.129 0.448 5e-12
Q759M1476 Protein SIP5 OS=Ashbya go yes no 0.193 0.165 0.378 9e-12
Q6CEU8497 Protein SIP5 OS=Yarrowia yes no 0.137 0.112 0.447 2e-11
A7TL97479 Protein SIP5 OS=Vanderwal N/A no 0.147 0.125 0.369 6e-11
B0YA45 812 Protein sip5 OS=Neosartor N/A no 0.137 0.068 0.376 6e-11
Q4WCJ7 812 Protein sip5 OS=Neosartor yes no 0.137 0.068 0.376 7e-11
A1DB29 812 Protein sip5 OS=Neosartor N/A no 0.137 0.068 0.376 7e-11
Q1DZ34 786 Protein SIP5 OS=Coccidioi N/A no 0.137 0.071 0.382 8e-11
A6REV3 824 Protein SIP5 OS=Ajellomyc N/A no 0.129 0.064 0.415 1e-10
P40210489 Protein SIP5 OS=Saccharom yes no 0.147 0.122 0.372 1e-10
>sp|A5DQJ8|SIP5_PICGU Protein SIP5 OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=SIP5 PE=3 SV=2 Back     alignment and function desciption
 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 44/78 (56%), Gaps = 22/78 (28%)

Query: 55  DLEECPICFLYYPS-LNRSRCCMKGICTECFLQMKN-------------------PNT-- 92
           D  ECPICFLYYPS LN SRCC++ ICTECF+Q+K                    P+T  
Sbjct: 211 DASECPICFLYYPSNLNISRCCLQPICTECFVQIKRLDPHPPHDDASNQPNGDSLPHTLI 270

Query: 93  TRPTQCPFCKTANYAVEY 110
           + P  CP+C  A++ V Y
Sbjct: 271 SEPAHCPYCAMADFGVIY 288
May negatively regulate the SNF1 kinase.
Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)
>sp|Q759M1|SIP5_ASHGO Protein SIP5 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SIP5 PE=3 SV=2 Back     alignment and function description
>sp|Q6CEU8|SIP5_YARLI Protein SIP5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SIP5 PE=3 SV=1 Back     alignment and function description
>sp|A7TL97|SIP5_VANPO Protein SIP5 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SIP5 PE=3 SV=1 Back     alignment and function description
>sp|B0YA45|SIP5_ASPFC Protein sip5 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=sip5 PE=3 SV=1 Back     alignment and function description
>sp|Q4WCJ7|SIP5_ASPFU Protein sip5 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sip5 PE=3 SV=1 Back     alignment and function description
>sp|A1DB29|SIP5_NEOFI Protein sip5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sip5 PE=3 SV=1 Back     alignment and function description
>sp|Q1DZ34|SIP5_COCIM Protein SIP5 OS=Coccidioides immitis (strain RS) GN=SIP5 PE=3 SV=1 Back     alignment and function description
>sp|A6REV3|SIP5_AJECN Protein SIP5 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SIP5 PE=3 SV=2 Back     alignment and function description
>sp|P40210|SIP5_YEAST Protein SIP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIP5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
147817790422 hypothetical protein VITISV_028354 [Viti 0.995 0.962 0.698 1e-161
388502442426 unknown [Medicago truncatula] 0.997 0.955 0.681 1e-155
255578534420 ubiquitin-protein ligase, putative [Rici 0.982 0.954 0.688 1e-149
224061326423 predicted protein [Populus trichocarpa] 0.987 0.952 0.700 1e-148
296086777420 unnamed protein product [Vitis vinifera] 0.899 0.873 0.668 1e-146
356549538431 PREDICTED: uncharacterized protein LOC10 0.997 0.944 0.671 1e-145
449438951440 PREDICTED: uncharacterized protein LOC10 1.0 0.927 0.649 1e-143
356556920428 PREDICTED: uncharacterized protein LOC10 0.997 0.950 0.668 1e-143
224114553313 predicted protein [Populus trichocarpa] 0.752 0.980 0.733 1e-117
225462106337 PREDICTED: uncharacterized protein LOC10 0.786 0.952 0.659 1e-113
>gi|147817790|emb|CAN66658.1| hypothetical protein VITISV_028354 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 296/424 (69%), Positives = 336/424 (79%), Gaps = 18/424 (4%)

Query: 1   MGNKLGRRRQVVDEKYTRPQGLYVHKDVDIKKLRKLILESKLAPCYPGDEDCCCDLEECP 60
           MGNKLGRRRQVV++KYTRPQGLY HKDVD KKLRKLIL+SKLAPCYPGDE+   D EECP
Sbjct: 1   MGNKLGRRRQVVEDKYTRPQGLYQHKDVDHKKLRKLILDSKLAPCYPGDEEATNDFEECP 60

Query: 61  ICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYAVEYRGVKTKEEKG 120
           ICFL+YPSLNRSRCC KGICTECFLQMKNPN+TRPT CP+CKTANYAVEYRGVKTKEEKG
Sbjct: 61  ICFLFYPSLNRSRCCTKGICTECFLQMKNPNSTRPT-CPYCKTANYAVEYRGVKTKEEKG 119

Query: 121 MEQIEEQRVIEAKIRIRQQELQDDEERMLKRQE--SSSMGIALGEVE---SSVSSSRS-V 174
           MEQIEEQRVIEAKIR+RQ+E+QD+EERM KRQE  SSS  +A GEVE   ++V S RS V
Sbjct: 120 MEQIEEQRVIEAKIRMRQKEIQDEEERMQKRQEISSSSSILAQGEVEYSTTAVPSFRSPV 179

Query: 175 EGEGNVSFQDLCATPMVRQPSHRRANGDDEFDLDLEDIMVMEAIWLSIQENGRQRNPTYE 234
           EG+   S QD  A  M+ Q    R N D+EFDLDLEDIMVMEAIWLSIQ+NGR RNP Y 
Sbjct: 180 EGDEIDSSQDPRAASMIIQTLPPRQNRDEEFDLDLEDIMVMEAIWLSIQDNGRHRNPLYG 239

Query: 235 EAAPSEQYVTEDRYVSSTMAPIAGSSSSPSGGLACAIAALAERQQVSGESSINHGGNMSS 294
           +   +EQYVTE+ YV   MAP   SSSSPSGGLACAIAALAERQQ+ GESS N+ GNM +
Sbjct: 240 DTTTAEQYVTEEHYVLPAMAPQVESSSSPSGGLACAIAALAERQQMGGESSTNYNGNMPA 299

Query: 295 FNMFPGSSRLYNRMDHDVENYAPAESLINTSPDGRMTVARDEGEWGIDRGSELAEAGTSY 354
           FNM PGSSR  NR++   ENY P ES ++  PDG + V +D+GEWG+DRGSE+AEAGTSY
Sbjct: 300 FNMPPGSSRFSNRVEQYPENYPPIESSMDALPDGGLAVTKDDGEWGVDRGSEVAEAGTSY 359

Query: 355 ASSDMAEDGGGISSLPED----------GGPIVPESFEEQMMLAMAASLAEARPMSNGPE 404
           ASSD  ++ GG+++LP            GGPIVPESFEEQMMLAMA SLAEAR  ++   
Sbjct: 360 ASSDATDEAGGVAALPPTDEAEGSFQNVGGPIVPESFEEQMMLAMAVSLAEARARTSTQG 419

Query: 405 VSWQ 408
           V WQ
Sbjct: 420 V-WQ 422

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388502442|gb|AFK39287.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255578534|ref|XP_002530130.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223530355|gb|EEF32246.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224061326|ref|XP_002300427.1| predicted protein [Populus trichocarpa] gi|222847685|gb|EEE85232.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296086777|emb|CBI32926.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549538|ref|XP_003543150.1| PREDICTED: uncharacterized protein LOC100816142 [Glycine max] Back     alignment and taxonomy information
>gi|449438951|ref|XP_004137251.1| PREDICTED: uncharacterized protein LOC101215345 [Cucumis sativus] gi|449483116|ref|XP_004156497.1| PREDICTED: uncharacterized protein LOC101226727 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356556920|ref|XP_003546768.1| PREDICTED: uncharacterized protein LOC100817758 [Glycine max] Back     alignment and taxonomy information
>gi|224114553|ref|XP_002316792.1| predicted protein [Populus trichocarpa] gi|222859857|gb|EEE97404.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225462106|ref|XP_002277570.1| PREDICTED: uncharacterized protein LOC100256555 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
TAIR|locus:2032110401 AT1G78420 [Arabidopsis thalian 0.948 0.965 0.507 1.5e-92
TAIR|locus:505006125335 AT1G17145 [Arabidopsis thalian 0.762 0.928 0.543 1.5e-87
DICTYBASE|DDB_G0278527 941 DDB_G0278527 [Dictyostelium di 0.350 0.151 0.410 5.9e-28
ASPGD|ASPL0000044989 821 AN1420 [Emericella nidulans (t 0.088 0.043 0.621 1.4e-09
UNIPROTKB|A4RGE6 819 SIP5 "Protein SIP5" [Magnaport 0.088 0.043 0.567 2.8e-09
CGD|CAL0001563513 orf19.2458 [Candida albicans ( 0.071 0.056 0.7 3.1e-07
UNIPROTKB|Q5AA26513 SIP5 "Protein SIP5" [Candida a 0.071 0.056 0.7 3.1e-07
POMBASE|SPBC25B2.03554 SPBC25B2.03 "zf-C3HC4 type zin 0.090 0.066 0.526 2.3e-06
SGD|S000004748489 SIP5 "Protein of unknown funct 0.088 0.073 0.540 1.4e-05
TAIR|locus:2032110 AT1G78420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 214/422 (50%), Positives = 256/422 (60%)

Query:     1 MGNKLGRRRQVVDEKYTRPQGLYVHKDVDIKKLRKLILESKLAPCYPGXXXXXXXXXXXP 60
             MGNKLGR+RQVV+E+YT+PQGLYV+KDVD+KKLRKLI+ESKLAPCYPG           P
Sbjct:     1 MGNKLGRKRQVVEERYTKPQGLYVNKDVDVKKLRKLIVESKLAPCYPGDDESCHDLEECP 60

Query:    61 ICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTANYAVEYRGVKTKEEKG 120
             ICFLYYPSLNRSRCCMK ICTECFLQMKNPN+ RPTQCPFCKT NYAVEYRGVK+KEEKG
Sbjct:    61 ICFLYYPSLNRSRCCMKSICTECFLQMKNPNSARPTQCPFCKTPNYAVEYRGVKSKEEKG 120

Query:   121 MEQIEEQRVIEAKIRIRQQELQDDEERMLKRQESSSMGIALXXXXXXXXXXXXXXXXXXX 180
             +EQ+EEQRVIEAKIR+RQ+E+QDDEE+M KR ES S   +                    
Sbjct:   121 IEQVEEQRVIEAKIRMRQKEMQDDEEKMQKRLESCSSSTSAMTGEMEYGSTSAISYNSLM 180

Query:   181 XFQDLCATP---MVRQPSHRRANGDDEFDLDLEDIMVMEAIWLSIQENGRQRNPTYEEAA 237
                ++  +    +VRQ S  R N +DE D+DLE++MVMEAIWLS+QE G QRN    E  
Sbjct:   181 DDGEIAPSQNASVVRQHSRPRGNREDEVDVDLEELMVMEAIWLSVQETGTQRNSASGEIT 240

Query:   238 PSEQYVTEDR-YVSST--MAPIA--XXXXXXXXXLACAIAALAERQQVSGESSI---NHG 289
              S QYVT++  YVSS   + PI            L+CAI+ALAERQ V GESS    NH 
Sbjct:   241 SSRQYVTDNHSYVSSPPRVTPIVEPATPSSSSGGLSCAISALAERQMV-GESSSHNHNHN 299

Query:   290 GNMSSFNMFPGSSRLYNRMDHDVENYAPAESLINTSPDGRMTVARDEGEWGIDRGSELAE 349
              N+SS++M PG+   Y    +D+E     + + N          R   E G + GS    
Sbjct:   300 VNVSSYSMLPGNCDSY----YDIEQ--EVDGIDNHHHH------RHHYEMG-ETGSS--- 343

Query:   350 AGTSYASSDMAEDGGGISSLPEDGG-PIVPESFXXXXXXXXXXXXXXXRPMSN-GP-EVS 406
                SY SS M   G G  + P      IVPESF                  +   P EV+
Sbjct:   344 --NSYVSSYMT--GEGFHNFPPPPPLVIVPESFEEQMMMAMAVSMAEVHATTTCAPTEVT 399

Query:   407 WQ 408
             WQ
Sbjct:   400 WQ 401
GO:0005737 "cytoplasm" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009644 "response to high light intensity" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=RCA
TAIR|locus:505006125 AT1G17145 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278527 DDB_G0278527 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000044989 AN1420 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|A4RGE6 SIP5 "Protein SIP5" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
CGD|CAL0001563 orf19.2458 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AA26 SIP5 "Protein SIP5" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
POMBASE|SPBC25B2.03 SPBC25B2.03 "zf-C3HC4 type zinc finger" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
SGD|S000004748 SIP5 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_I1184
hypothetical protein (423 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
pfam1392345 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI 0.002
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger) Back     alignment and domain information 
 Score = 35.5 bits (82), Expect = 0.002
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 55  DLEECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKT 103
           +  ECPIC            C    C EC L+     +     CP C+T
Sbjct: 1   EELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSK----CPICRT 45

Length = 45

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
KOG2789482 consensus Putative Zn-finger protein [General func 100.0
KOG2789482 consensus Putative Zn-finger protein [General func 98.95
PF1463444 zf-RING_5: zinc-RING finger domain 96.45
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 93.63
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 93.35
KOG2164513 consensus Predicted E3 ubiquitin ligase [Posttrans 93.13
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 92.92
cd0016245 RING RING-finger (Really Interesting New Gene) dom 91.6
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 91.31
KOG2177386 consensus Predicted E3 ubiquitin ligase [Posttrans 90.92
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 90.13
PHA02929238 N1R/p28-like protein; Provisional 88.6
KOG3002299 consensus Zn finger protein [General function pred 87.79
PHA02926242 zinc finger-like protein; Provisional 84.94
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 84.94
KOG0287442 consensus Postreplication repair protein RAD18 [Re 83.92
PF1457048 zf-RING_4: RING/Ubox like zinc-binding domain; PDB 82.44
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 81.58
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 81.5
smart0050463 Ubox Modified RING finger domain. Modified RING fi 80.96
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 80.85
>KOG2789 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1e-64  Score=503.73  Aligned_cols=381  Identities=24%  Similarity=0.250  Sum_probs=297.7

Q ss_pred             CCCccccccc-------ccCCCcccccccccCCCcc-hHHHHHHHHhcccCCCCCCCCCc----CCCCC------cCCcc
Q 015359            1 MGNKLGRRRQ-------VVDEKYTRPQGLYVHKDVD-IKKLRKLILESKLAPCYPGDEDC----CCDLE------ECPIC   62 (408)
Q Consensus         1 MGN~~~rr~~-------~vderyt~PqGLY~~~d~D-~k~vRkLI~e~kLAP~ypg~ed~----~~~~~------ECPIC   62 (408)
                      |||++||.|+       .||++|+.|||||...|.| .++|||||++++|+|||+|++.+    .+++.      |||||
T Consensus         1 MGN~~Gk~rQed~~~~~~vd~~y~~pqgvy~~~d~~~s~~vRkl~~es~l~p~y~G~d~~~~ts~Hlls~~rr~~ecpic   80 (482)
T KOG2789|consen    1 MGNVPGKIRQEDSFNDVRVDSSYNTPQGVYKQYDEEASSRVRKLRTESLLNPIYNGNDARTKTSSHLLSTSRRKTECPIC   80 (482)
T ss_pred             CCCccccccccccccceeccccccCccceeecCcHHHHHHHHHHHHHHhhccccCCcccccccccchhhhccccccCcee
Confidence            9999999998       9999999999999999999 89999999999999999999984    45566      99999


Q ss_pred             cccCCC-CccccccCCCcchhhhhcccCCC------------------CCCC--cCCCCCCCCCceEEEcCCC-------
Q 015359           63 FLYYPS-LNRSRCCMKGICTECFLQMKNPN------------------TTRP--TQCPFCKTANYAVEYRGVK-------  114 (408)
Q Consensus        63 FlyYp~-lN~SrCC~q~ICTECflQikr~~------------------~s~p--~~CPfC~~~~f~V~Y~g~k-------  114 (408)
                      |||||+ +|++|||.|+||+|||++|+++.                  .+.|  +.||||.+++|+|+|++.+       
T Consensus        81 flyyps~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~~i~~~~p~~~  160 (482)
T KOG2789|consen   81 FLYYPSAKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYIKIVDGLPLHD  160 (482)
T ss_pred             eeecccccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeeeccccCCcccc
Confidence            999996 99999999999999999999864                  2667  8999999999999999999       


Q ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCC--CC--Cccceeecc--------------C-CCCCCC
Q 015359          115 TKEEKGMEQIEEQRVIEAKIRIRQQELQDDEERMLKRQESSSM--GI--ALGEVESSV--------------S-SSRSVE  175 (408)
Q Consensus       115 t~eek~~~q~EeqrviEa~ir~r~~e~~~~e~~~~kr~es~~~--~~--~~~~v~~~~--------------~-s~~~~~  175 (408)
                      +++|+.+++.+++.++++|++++++++++..++++||+.+-..  .+  -....+|.-              + .+...+
T Consensus       161 t~~e~~~e~~~~p~g~l~Kst~~~~~~~~~~~k~qkr~h~~~~~~~t~~~~~~wqy~~~~~fl~~~~~~~~a~~~~s~l~  240 (482)
T KOG2789|consen  161 TFDENLEEFEDVPIGNLRKSTFNELIDKSLSKKEQKRMHAKIFRARTYKKRILWQYNENETFLERKLEMKRAGSKSSNLE  240 (482)
T ss_pred             ccCccccccccccchhhhhccchhhhcCCchHHHHHHHHhhhhhhhhhhcchhhhccchhhHHHHHHHHhhhhccccccc
Confidence            9999999999999999999999999999999999999993332  22  235556651              1 133333


Q ss_pred             C-CCcccccccccC--CCccCCcccC---CCCCCccccChhHHHHHHHHHHHHHhhcCCCCCC---cCCCCCCCCccccc
Q 015359          176 G-EGNVSFQDLCAT--PMVRQPSHRR---ANGDDEFDLDLEDIMVMEAIWLSIQENGRQRNPT---YEEAAPSEQYVTED  246 (408)
Q Consensus       176 ~-~~~~~sq~s~~~--~~~~~~~~~~---~~r~~~~d~dlEdiMvmEAIwlSiQe~~~~~n~~---~~~~~~~~~~~~~~  246 (408)
                      + ..+-.+|..+-.  ..-+..-.++   .+|-+.|++++|.||+|||||+|+|+.+.++|..   .++-+++.++..++
T Consensus       241 d~g~~~p~~N~~~~~~h~~~t~~~pr~~~~~r~~~~~~~~e~lm~~eai~~S~~~~q~~r~~~~~ps~EV~~~~~~~~dn  320 (482)
T KOG2789|consen  241 DNGSSQPRKNYHLPSDHLKYTLYKPRSECPIRFLYFPGPFEYLMCCEAIICSECFVQIKRADPHFPSDEVDPTEPQTNDN  320 (482)
T ss_pred             ccCCCCcccccCcccccccccccCCcccCCchhhhcCccHHHHHHHHHHHHHHHHhhcccCCCCCCCCccCCCCcccccc
Confidence            3 333333333211  0001111334   7889999999999999999999999999999988   78888888888777


Q ss_pred             c-cccCCC-----------CCCCCCCCCCCCChhHHHHHHHHh--hhccccccccCCCC--CcccccCC---CCchhhhc
Q 015359          247 R-YVSSTM-----------APIAGSSSSPSGGLACAIAALAER--QQVSGESSINHGGN--MSSFNMFP---GSSRLYNR  307 (408)
Q Consensus       247 ~-~~~~~~-----------~~~~~~~~s~sgGlAcAIAalAE~--Q~~~~eSs~~~n~n--~~sfnmlp---~s~r~ynr  307 (408)
                      . |.+++.           .+..|++.-.+||++|+|-+++|+  |.+..+|..++++|  +..+.|+|   +++..|..
T Consensus       321 e~~~s~P~~~~~~~va~~~e~~~P~S~~~tg~~s~~ids~~e~~~q~v~~ds~~~~ih~i~s~T~~~~p~i~~n~~r~~~  400 (482)
T KOG2789|consen  321 EKDTSEPANCPYCAVASFSETYQPPSNRETGIGSMPIDSYVEKDAQIVRADSGQPNIHAITSDTIRPDPEIKLNKERARL  400 (482)
T ss_pred             cccccCCCCCCccceeeeeeccCCCccccccccccchhhhhhhhhhhhcccCCCcccccccccccccCchhccchHHHHH
Confidence            6 555443           133444444499999999999999  77777777776655  66699999   88988988


Q ss_pred             ccccccccCccccccCCCCCCccceeccCcccccccCccccccc--cccccccccccCCCCCCCCCCCCCCCCCcHHHHH
Q 015359          308 MDHDVENYAPAESLINTSPDGRMTVARDEGEWGIDRGSELAEAG--TSYASSDMAEDGGGISSLPEDGGPIVPESFEEQM  385 (408)
Q Consensus       308 i~qD~~~ys~~~~~~e~~pd~~~~~tr~~gews~d~~Se~AEAg--TSyA~Sd~~~d~g~~~s~~s~~~~ivPeSFEEQM  385 (408)
                      |+|.++...                .    +.+.-+-+++++++  +||+.|.+++++--+.+-|++.+ ++||+|++||
T Consensus       401 ~~~~~~~~d----------------~----h~~~r~h~p~~st~~~~s~~~S~~~de~~h~~~pp~pli-~~~e~~~~~~  459 (482)
T KOG2789|consen  401 MRRSANATD----------------I----HISNRLHDPSHSTRRNTSHSISPIHDESTHASRPPEPLI-NELEDQMVRE  459 (482)
T ss_pred             HHHhhhhhh----------------h----hhhhhhcCccccccccccccccccccCccccCCCCCcce-ecchhHHHHH
Confidence            888876655                1    11122233555554  67777776665443333344444 8899999999


Q ss_pred             HHHHHHHhhhhccCCCC
Q 015359          386 MLAMAASLAEARPMSNG  402 (408)
Q Consensus       386 MLAMAvSLAEaramts~  402 (408)
                      |++|+|+.+|.|+.++-
T Consensus       460 ~~~~s~~~~~~h~~s~n  476 (482)
T KOG2789|consen  460 AIRLSLEDQDNHKKSKN  476 (482)
T ss_pred             HHHhcchhhhhhhhccC
Confidence            99999999999998764

>KOG2789 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 96.35
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 96.18
2ysl_A73 Tripartite motif-containing protein 31; ring-type 96.06
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 95.98
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 95.95
2ecw_A85 Tripartite motif-containing protein 30; metal bind 95.94
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 95.94
2ect_A78 Ring finger protein 126; metal binding protein, st 95.9
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 95.7
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 95.69
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 95.56
2ecm_A55 Ring finger and CHY zinc finger domain- containing 95.53
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 95.28
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 95.16
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 95.07
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 94.95
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 94.95
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 94.92
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 94.89
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 94.88
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 94.83
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 94.83
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 94.73
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 94.72
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 94.57
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 94.51
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 94.49
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 94.38
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 94.35
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 94.33
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 94.33
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 94.26
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 94.21
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 94.02
2ea5_A68 Cell growth regulator with ring finger domain prot 93.93
2ysj_A63 Tripartite motif-containing protein 31; ring-type 93.76
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 93.18
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 92.99
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 92.93
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 92.88
1wim_A94 KIAA0161 protein; ring finger domain, UBCM4-intera 92.61
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 92.47
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 92.31
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 91.64
1z6u_A150 NP95-like ring finger protein isoform B; structura 91.34
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 91.33
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 90.02
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 89.14
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 87.71
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 87.33
3t6p_A345 Baculoviral IAP repeat-containing protein 2; ring, 86.66
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 86.58
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 86.29
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 85.28
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 85.0
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 83.64
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 81.58
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 81.34
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 80.27
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=96.35  E-value=0.0013  Score=49.63  Aligned_cols=51  Identities=25%  Similarity=0.699  Sum_probs=36.8

Q ss_pred             CCCCCcCCcccccCCCC---ccccccCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359           53 CCDLEECPICFLYYPSL---NRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKTA  104 (408)
Q Consensus        53 ~~~~~ECPICFlyYp~l---N~SrCC~q~ICTECflQikr~~~s~p~~CPfC~~~  104 (408)
                      ..+..+||||+..|..-   -+..=|...+|..|+.++-... .....||+|..+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~   65 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS-INGVRCPFCSKI   65 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC-SSCBCCTTTCCC
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC-CCCcCCCCCCCc
Confidence            34678999999988741   1222478999999998875432 124689999986
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 408
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 6e-04
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 36.1 bits (83), Expect = 6e-04
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 57  EECPICFLYYPSLNRSRCCMKGICTECFLQMKNPNTTRPTQCPFCKT 103
           E CPIC     + + +  C+   C  C  +    N T    CP CK 
Sbjct: 6   ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPT----CPLCKV 48

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 96.88
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 95.95
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 95.91
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 95.89
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 95.73
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 95.68
d1wima_94 UbcM4-interacting protein 4 (KIAA0161) {Human (Hom 94.62
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 94.45
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 93.66
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 93.49
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 91.96
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 88.07
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 87.78
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 85.33
d2c2la280 STIP1 homology and U box-containing protein 1, STU 83.0
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 80.87
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00021  Score=50.25  Aligned_cols=45  Identities=29%  Similarity=0.790  Sum_probs=34.1

Q ss_pred             CcCCcccccCC--CCccccc-cCCCcchhhhhcccCCCCCCCcCCCCCCCC
Q 015359           57 EECPICFLYYP--SLNRSRC-CMKGICTECFLQMKNPNTTRPTQCPFCKTA  104 (408)
Q Consensus        57 ~ECPICFlyYp--~lN~SrC-C~q~ICTECflQikr~~~s~p~~CPfC~~~  104 (408)
                      .|||||+.-|-  ......| |...+|..|+.++....   ..+||.|+++
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~---~~~CP~CR~~   48 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE---NGLCPACRKP   48 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTS---CCBCTTTCCB
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhc---CCCCCccCCc
Confidence            48999998875  2333334 88999999999987642   2479999976
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure