Citrus Sinensis ID: 015368

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MEKTKTLLLLLTSSIILFKLYLFPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKLLNQSDQISETILKLPSQSRASYQLRTHE
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccccccccEEEccccHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHcccccccEEEEEEcccccccccccccHHHHHHHHHHHcccccEEEccHHHHHHHHcccccEEEEEEcccccccHHHHHHHHccccccEEEEEccHHHHHHccccccccccEEEEEcccccccccccccccHHHHHHHHHHcccccEEEEccccHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccHHHHccccccccEEEEEEccccEEEcccccccHHHHHHHHHHHHccccccccccccccccccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEccccccEEEEEcccHHHHHHHHHHHHcccccccccccccccccccEEEEEcccHHHHHcccccEEEEEEcccccHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHcccccccEEEEEccccccEcccccccHHHHHHHHHHHcccccEEEccHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEccHHHHHHccccccccccEEEEEEcccccEEEccccccHHHHHHHHHHcccccEEEEccccHHHHHcccccEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEEccHHHHcHHHHHHcccccccccEEEEEccccccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEHccccccc
Coil and Loop (DISEMBL)
MEKTKTLLLLLTSSIILfklylfpptqshedlkaepdeleltnlnnnhtwpllYAKDvvslngknfsefmgknRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHsdvnfyqttsadvaeffhihpkskrpaLIFLHleagkatpfrhQFTRLAIANFVTHTKHPLVVTLTIHnaqfvfqdprkqlwlfapaygsdkvILTFEEVAKALKGKVNMLLHVYVEMnsegvgrrvsqefgvsgnaprvIAYSARDAKKYVLNGELTLSSIKSFGEEFledkllnqsdQISETIlklpsqsrasyqLRTHE
Flexible Loop (DISEMBL)
MEKTKTLLLLLTSSIILFKLYLFPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMtlgtysitttdeaeRILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSegvgrrvsqefgvsgnapRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKLLNQSDQIsetilklpsqsrasyqlrthe
Low Complexity Region (SEG)
MEktktllllltssiilfklYLFPPTQSHEDLKAEPDeleltnlnnnHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKLLNQSDQISETILKLPSQSRASYQLRTHE
Disordered region (IsUnstruct)
*****TLLLLLTSSIILFKLYLFPP**************ELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMES*ELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL****************************
Disordered Region (DISOPRED)
****KTLLLLLTSSIILFKLYLFPPTQSH***********************LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKLLNQSDQISETILKLPSQSRASYQ*****
Disordered Region (DISEMBL)
MEKTKTLLLLLTSSIILFKLYLFPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKLLNQSDQISETILKLPS************
Disordered Region (DISPRO)
***TKTLLLLLTSSIILFKLYLFPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKLLNQSDQISETILKLPSQSRASYQ*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEKTKTLLLLLTSSIILFKLYLFPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKLLNQSDQISETILKLPSQSRASYQLRTHE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q8VX13	579	Protein disulfide isomera	yes	no	0.825	0.582	0.470	1e-79
Q9FF55	597	Protein disulfide isomera	no	no	0.855	0.584	0.425	1e-73
Q67IX6	563	Protein disulfide isomera	yes	no	0.774	0.561	0.438	1e-63
A3KPF5	537	Protein disulfide isomera	no	no	0.759	0.577	0.310	1e-30
P21195	509	Protein disulfide-isomera	yes	no	0.794	0.636	0.276	1e-29
Q66GQ3	534	Protein disulfide isomera	no	no	0.759	0.580	0.293	6e-28
Q5WA72	533	Protein disulfide isomera	no	no	0.781	0.598	0.287	1e-27
P05307	510	Protein disulfide-isomera	yes	no	0.772	0.617	0.281	2e-27
P07237	508	Protein disulfide-isomera	yes	no	0.772	0.620	0.281	8e-27
Q2HWU2	510	Protein disulfide-isomera	N/A	no	0.789	0.631	0.279	2e-26

>sp|Q8VX13|PDI13_ARATH Protein disulfide isomerase-like 1-3 OS=Arabidopsis thaliana GN=PDIL1-3 PE=2 SV=1

 Score =  296 bits (759), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 162/344 (47%), Positives = 221/344 (64%), Gaps = 7/344 (2%)

Query: 51  PLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM 110
           P +  KDV  L   NF+EF+G N   MV FYA WC   + L PE+AAAA  LKG A L  
Sbjct: 94  PPVDEKDVAVLTKDNFTEFVGNNSFAMVEFYAPWCGACQALTPEYAAAATELKGLAALAK 153

Query: 111 VDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTT 170
           +DA  E DLA++Y I  +PT++LFV G  +  + GERT+D I  W+++K +   ++ITT 
Sbjct: 154 IDATEEGDLAQKYEIQGFPTVFLFVDGEMRKTYEGERTKDGIVTWLKKKASPSIHNITTK 213

Query: 171 DEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSK 230
           +EAER+L+ E KLV GFL+ L G ESEELAAAS+L  D++FYQT S D+A+ F I  + K
Sbjct: 214 EEAERVLSAEPKLVFGFLNSLVGSESEELAAASRLEDDLSFYQTASPDIAKLFEIETQVK 273

Query: 231 RPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP-RKQLWL 289
           RPAL+ L  E  K   F   FT+ AIA FV+  K PLV+  T   A  +F+   + QL L
Sbjct: 274 RPALVLLKKEEEKLARFDGNFTKTAIAEFVSANKVPLVINFTREGASLIFESSVKNQLIL 333

Query: 290 FAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAY 349
           FA A  S+K + T  EVAK+ KGK    + VYV+M++E  G  VS  FGV+G AP+V+ Y
Sbjct: 334 FAKANESEKHLPTLREVAKSFKGK---FVFVYVQMDNEDYGEAVSGFFGVTGAAPKVLVY 390

Query: 350 SA-RDAKKYVLNGELTLSSIKSFGEEFLEDKL--LNQSDQISET 390
           +   D +K++L+GELT+++IK+  E+FL DKL    +SD + E 
Sbjct: 391 TGNEDMRKFILDGELTVNNIKTLAEDFLADKLKPFYKSDPLPEN 434

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

>sp|Q9FF55|PDI14_ARATH Protein disulfide isomerase-like 1-4 OS=Arabidopsis thaliana GN=PDIL1-4 PE=1 SV=1

 Score =  277 bits (708), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/362 (42%), Positives = 228/362 (62%), Gaps = 13/362 (3%)

Query: 37  DELELTNLNNNHTWPL----LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLA 92
           +E + ++L N  + PL    +  KDVV +  +NF++ +  N+ V+V FYA WC   + LA
Sbjct: 80  EEGDFSDLGNPDSDPLPTPEIDEKDVVVIKERNFTDVIENNQYVLVEFYAPWCGHCQSLA 139

Query: 93  PEFAAAAKMLKGEAD-LVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV 151
           PE+AAAA  LK +   L  +DA  E +LA+EY +  +PTL  FV G  +  + G RT++ 
Sbjct: 140 PEYAAAATELKEDGVVLAKIDATEENELAQEYRVQGFPTLLFFVDGEHK-PYTGGRTKET 198

Query: 152 ISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNF 211
           I  WV++K+  G Y++TT D+AE++LT  +K+VLG+L+ L G+E ++L AASK   DVNF
Sbjct: 199 IVTWVKKKIGPGVYNLTTLDDAEKVLTSGNKVVLGYLNSLVGVEHDQLNAASKAEDDVNF 258

Query: 212 YQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTL 271
           YQT + DVA+ FH+ P+SKRPAL+ +  E  K + F  +F + A+ +FV+  K  LV   
Sbjct: 259 YQTVNPDVAKMFHLDPESKRPALVLVKKEEEKISHFDGEFVKSALVSFVSANKLALVSVF 318

Query: 272 TIHNAQFVFQDP-RKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVG 330
           T   A  +F+   +KQL LF     S+KV+  F+E AK+ KGK   L+ V V++++E  G
Sbjct: 319 TRETAPEIFESAIKKQLLLFVTKNESEKVLTEFQEAAKSFKGK---LIFVSVDLDNEDYG 375

Query: 331 RRVSQEFGVSGNAPRVIAYSA-RDAKKYVLNGELTLSSIKSFGEEFLEDKL--LNQSDQI 387
           + V++ FGVSGN P++I Y+   D KKY  +GE+    IK FGE+FL DKL    +SD I
Sbjct: 376 KPVAEYFGVSGNGPKLIGYTGNEDPKKYFFDGEIQSDKIKIFGEDFLNDKLKPFYKSDPI 435

Query: 388 SE 389
            E
Sbjct: 436 PE 437

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q67IX6|PDI14_ORYSJ Protein disulfide isomerase-like 1-4 OS=Oryza sativa subsp. japonica GN=PDIL1-4 PE=2 SV=1

 Score =  243 bits (621), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 143/326 (43%), Positives = 209/326 (64%), Gaps = 10/326 (3%)

Query: 61  LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM---LKGEADLVMVDAYLEK 117
           L+  NFS+F+  +R+VMV FYA WC   + LAP++AAAA     L  +  L  VDA  + 
Sbjct: 78  LSAANFSDFLASHRHVMVEFYAPWCAHCQALAPDYAAAAADLSPLAHQVALAKVDATEDT 137

Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL 177
           DLA++Y++  +PT+  F+ GV +  + G RT++ I +WV +K+  G  +ITT DEAE+IL
Sbjct: 138 DLAQKYDVQGFPTILFFIDGVPK-DYNGARTKEAIVSWVNKKLAPGVQNITTVDEAEKIL 196

Query: 178 TVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFL 237
           T E K +L  L  L G  S+E+AAAS+L   +NFYQT++ DVA+ FH+ P +KRP+L+ L
Sbjct: 197 TGEDKAILAVLDSLSGAHSDEIAAASRLEDAINFYQTSNPDVAKLFHLDPAAKRPSLVLL 256

Query: 238 -HLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP-RKQLWLFAPAYG 295
              E  K T +   F   AIA+FV+  K PLV TLT   A  +F +P +KQ+ LF  A  
Sbjct: 257 KKQEEEKLTFYDGPFKASAIADFVSANKLPLVNTLTQETAPSIFDNPIKKQILLFVVANE 316

Query: 296 SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSA-RDA 354
           S K +  F+E +K+ KGK   LL V+VE ++E VG  V+  FG++G    V+AY+   DA
Sbjct: 317 SSKFLPIFKEASKSFKGK---LLFVFVERDNEEVGEPVANYFGITGQETTVLAYTGNEDA 373

Query: 355 KKYVLNGELTLSSIKSFGEEFLEDKL 380
           + + L+GE+++ +IK F E+FLE+KL
Sbjct: 374 RNFFLDGEISVENIKRFAEDFLEEKL 399

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|A3KPF5|PDI15_ARATH Protein disulfide isomerase-like 1-5 OS=Arabidopsis thaliana GN=PDIL1-5 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 147/319 (46%), Gaps = 9/319 (2%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM---VDAY 114
           V+ LNG      +  N  VMV+ YA WC  S +L P FA AA  LK     V+   +D  
Sbjct: 79  VLELNGDYTKRVIDGNEFVMVLGYAPWCARSAELMPRFAEAATALKEIGSSVLMAKIDGD 138

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAE 174
               +A E  I  +PTL LFV G       G    D++  WV++K      ++ T DEA 
Sbjct: 139 RYSKIASELEIKGFPTLLLFVNGTSLTYNGGSSAEDIV-IWVQKKTGAPIITLNTVDEAP 197

Query: 175 RILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPAL 234
           R L      VLG     EG E  E   A+K   ++ F +T  +DVA+      KS    +
Sbjct: 198 RFLDKYHTFVLGLFEKFEGSEHNEFVKAAKSDDEIQFIETRDSDVAKLLFPDLKSNNVFI 257

Query: 235 IFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWLFAPA 293
             +  EA + T +   +    I  F+   K PL   LT  N  +V+  P K Q+ LF+ A
Sbjct: 258 GLVKPEAERYTVYDGSYKMEKILEFLGSNKFPLFTKLTETNTVWVYSSPVKLQVMLFSKA 317

Query: 294 YGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV-SGNAPRVIAYSAR 352
               K+    E++A+  K K   L+ +YV++ +E +       FG+ +GN   V A+   
Sbjct: 318 DDFQKLAQPLEDIARKFKSK---LMFIYVDITNENLAMPFLILFGIEAGNKTVVAAFDNN 374

Query: 353 DAKKYVLNGELTLSSIKSF 371
              KY+L  + + +SI+ F
Sbjct: 375 LNSKYLLESDPSPNSIEEF 393

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P21195|PDIA1_RABIT Protein disulfide-isomerase OS=Oryctolagus cuniculus GN=P4HB PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 165/343 (48%), Gaps = 19/343 (5%)

Query: 49  TWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD- 107
            W      +V+ L   NF+E +  +++++V FYA WC   K LAPE+A AA  LK E   
Sbjct: 18  AWAAEEEDNVLVLKSSNFAEELAAHKHLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSD 77

Query: 108 --LVMVDAYLEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMTLG 163
             L  VDA  E DLA++Y +  YPT+  F  G      ++   R  D I  W++++    
Sbjct: 78  IRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPA 137

Query: 164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFF 223
             ++  +  AE ++      V+GF  D+E   +++   A++   D+ F  T S+DV   +
Sbjct: 138 ATTLADSAAAESLVESSEVAVIGFFKDVESDAAKQFLLAAEATDDIPFGLTASSDVFSRY 197

Query: 224 HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVF-QD 282
            +H   +   ++F   + G+   F  + T+  + +F+ H + PLV+  T   A  +F  +
Sbjct: 198 QVH---QDGVVLFKKFDEGRNN-FEGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGE 253

Query: 283 PRKQLWLFAP--AYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVS 340
            +  + LF P  A   D  +  F++ A+  KGK+   L ++++ +     +R+ + FG+ 
Sbjct: 254 IKTHILLFLPRSAADHDGKLSGFKQAAEGFKGKI---LFIFID-SDHADNQRILEFFGLK 309

Query: 341 GN---APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
                A R+I       K    + ELT   I  F + FLE K+
Sbjct: 310 KEECPAVRLITLEEEMTKYKPESDELTAEGITEFCQRFLEGKI 352

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q66GQ3|PDI16_ARATH Protein disulfide isomerase-like 1-6 OS=Arabidopsis thaliana GN=PDIL1-6 PE=1 SV=1

 Score =  125 bits (314), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 148/320 (46%), Gaps = 10/320 (3%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM---VDAY 114
           VV LNG N    +  N  VMV+ YA WC  S +L P FA AA  LK     V+   +D  
Sbjct: 77  VVELNGDNTKRLIDGNEYVMVLGYAPWCARSAELMPRFAEAATDLKEIGSSVLMAKIDGE 136

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAE 174
               +A +  I  +PTL LFV G  Q  + G  + + I  WV++K    T  + T DEA 
Sbjct: 137 RYSKVASQLEIKGFPTLLLFVNGTSQ-SYTGGFSSEEIVIWVQKKTGASTIKLDTVDEAS 195

Query: 175 RILTVESKLVLGFLHDLEGMES-EELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPA 233
             L      +LG     E     +E   A+ L +++ F +T+S DVA+    + K+    
Sbjct: 196 GFLKKHHTFILGLFEKSEDSSGHDEFVKAASLDNEIQFVETSSIDVAKLLFPNLKTNNVF 255

Query: 234 LIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWLFAP 292
           +  +  EA K T +        I  F+   K PLV  LT  N   V+  P K Q+ +F+ 
Sbjct: 256 VGLVKTEAEKYTSYDGPCQAEKIVEFLNSNKFPLVTKLTESNTVRVYSSPVKLQVMVFSK 315

Query: 293 AYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVI-AYSA 351
               + +    E++A+  K K   L+ +Y+++++E +       FG+      V+ A+  
Sbjct: 316 TDDFESLAQPLEDIARKFKSK---LMLIYIDISNENLAMPFLTLFGIEDAKKTVVAAFDN 372

Query: 352 RDAKKYVLNGELTLSSIKSF 371
               KY+L  + + S+I+ F
Sbjct: 373 NLNSKYLLESDPSPSNIEEF 392

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5WA72|PDI15_ORYSJ Protein disulfide isomerase-like 1-5 OS=Oryza sativa subsp. japonica GN=PDIL1-5 PE=2 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 146/327 (44%), Gaps = 8/327 (2%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM---VDAY 114
           V+ L+  N    + +N  V+++ YA WC  S +L P FA AA  L+     V    +D  
Sbjct: 70  VLVLDNDNARRAVEENAEVLLLGYAPWCERSAQLMPRFAEAAAALRAMGSAVAFAKLDGE 129

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAE 174
                A    +  +PT+ LFV G  + QF G  T+D I  WVR+K       I + D AE
Sbjct: 130 RYPKAASAVGVKGFPTVLLFVNGT-EHQFTGLHTKDAIVTWVRKKTGAPASRIQSKDSAE 188

Query: 175 RILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPAL 234
             L  +    +G   + EG E EE   A+   ++V F +T   +VA+       S+   L
Sbjct: 189 EFLKKDQTFAVGLFKNFEGAEYEEFVKAATSENEVQFVETNDRNVAKILFPGIASEEQFL 248

Query: 235 IFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWLFAPA 293
             +  E  K   F   F    I  FV   K PL+   T  N+  V+  P K Q++ FA A
Sbjct: 249 GLVKSEPEKFEKFNGAFEEKEIIQFVELNKFPLITVFTDLNSGKVYGSPIKLQVFTFAEA 308

Query: 294 YGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARD 353
           Y  + +    +EVA+  K K+   + +YV+   E + +     +G+    P V A+    
Sbjct: 309 YDFEDLESMIQEVARGFKTKI---MLIYVDTAEEKLAKPFLTLYGLEPEKPTVTAFDTSK 365

Query: 354 AKKYVLNGELTLSSIKSFGEEFLEDKL 380
             KY++  E+   +++ F    LE  L
Sbjct: 366 GTKYLMEAEINAKNLQDFCLSLLEGTL 392

Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P05307|PDIA1_BOVIN Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 163/334 (48%), Gaps = 19/334 (5%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LVMVDAY 114
           V+ L+  NF E +  ++ ++V FYA WC   K LAPE+A AA  LK E     L  VDA 
Sbjct: 28  VLVLHKGNFDEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 87

Query: 115 LEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMTLGTYSITTTDE 172
            E DLA++Y +  YPT+  F  G      ++   R  D I  W++++      +++    
Sbjct: 88  EESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAASTLSDGAA 147

Query: 173 AERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRP 232
           AE ++      V+GF  D+E   +++   A+++  D+ F  T+++DV   F  +   K  
Sbjct: 148 AEALVESSEVAVIGFFKDMESDSAKQFFLAAEVIDDIPFGITSNSDV---FSKYQLDKDG 204

Query: 233 ALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVF-QDPRKQLWLFA 291
            ++F   + G+   F  + T+  + +F+ H + PLV+  T   A  +F  + +  + LF 
Sbjct: 205 VVLFKKFDEGRNN-FEGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 263

Query: 292 PAYGSD--KVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN---APRV 346
           P   SD    +  F++ A++ KGK+   L ++++ +     +R+ + FG+      A R+
Sbjct: 264 PKSVSDYEGKLSNFKKAAESFKGKI---LFIFIDSDHTD-NQRILEFFGLKKEECPAVRL 319

Query: 347 IAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
           I       K    + ELT   I  F   FLE K+
Sbjct: 320 ITLEEEMTKYKPESDELTAEKITEFCHRFLEGKI 353

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P07237|PDIA1_HUMAN Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3

 Score =  121 bits (304), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 160/334 (47%), Gaps = 19/334 (5%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LVMVDAY 114
           V+ L   NF+E +  ++ ++V FYA WC   K LAPE+A AA  LK E     L  VDA 
Sbjct: 26  VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 85

Query: 115 LEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMTLGTYSITTTDE 172
            E DLA++Y +  YPT+  F  G      ++   R  D I  W++++      ++     
Sbjct: 86  EESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLPDGAA 145

Query: 173 AERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRP 232
           AE ++      V+GF  D+E   +++   A++   D+ F  T+++DV   F  +   K  
Sbjct: 146 AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDV---FSKYQLDKDG 202

Query: 233 ALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVF-QDPRKQLWLFA 291
            ++F   + G+   F  + T+  + +F+ H + PLV+  T   A  +F  + +  + LF 
Sbjct: 203 VVLFKKFDEGRNN-FEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 261

Query: 292 PAYGS--DKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN---APRV 346
           P   S  D  +  F+  A++ KGK+   L ++++ +     +R+ + FG+      A R+
Sbjct: 262 PKSVSDYDGKLSNFKTAAESFKGKI---LFIFIDSDHTD-NQRILEFFGLKKEECPAVRL 317

Query: 347 IAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
           I       K    + ELT   I  F   FLE K+
Sbjct: 318 ITLEEEMTKYKPESEELTAERITEFCHRFLEGKI 351

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q2HWU2|PDIA1_MACFU Protein disulfide-isomerase OS=Macaca fuscata fuscata GN=P4HB PE=2 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 164/347 (47%), Gaps = 25/347 (7%)

Query: 51  PLLYAK------DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG 104
           P LYA        V+ L   NF+E +  ++ ++V FYA WC   K LAPE+A AA  LK 
Sbjct: 15  PGLYADAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA 74

Query: 105 EAD---LVMVDAYLEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREK 159
           E     L  VDA  E DLA++Y +  YPT+  F  G      ++   R  D I  W++++
Sbjct: 75  EGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 134

Query: 160 MTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADV 219
                 ++     AE ++      V+GF  D+E   +++   A++   D+ F  T+++DV
Sbjct: 135 TGPAATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDV 194

Query: 220 AEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFV 279
              F  +   K   ++F   + G+   F  + T+  + +F+ + + PLV+  T   A  +
Sbjct: 195 ---FSKYQLDKDGVVLFKKFDEGRNN-FEGEVTKENLLDFIKYNQLPLVIEFTEQTAPKI 250

Query: 280 F-QDPRKQLWLFAPAYGS--DKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQE 336
           F  + +  + LF P   S  D  +  F+  A++ KGK+   L ++++ +     +R+ + 
Sbjct: 251 FGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI---LFIFIDSDHTD-NQRILEF 306

Query: 337 FGVSGN---APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
           FG+      A R+I       K    + ELT   I  F   FLE K+
Sbjct: 307 FGLKKEECPAVRLITLEEEMTKYKPESDELTAERITEFCHRFLEGKI 353

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Macaca fuscata fuscata (taxid: 9543)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
225449060	561	PREDICTED: protein disulfide isomerase-l	0.796	0.579	0.547	1e-88
224104643	583	predicted protein [Populus trichocarpa]	0.835	0.584	0.497	9e-86
147855039	578	hypothetical protein VITISV_036230 [Viti	0.796	0.562	0.527	2e-85
151413538	531	protein disulfide isomerase precursor [O	0.889	0.683	0.462	1e-84
296086024	458	unnamed protein product [Vitis vinifera]	0.757	0.674	0.550	2e-84
225435313	577	PREDICTED: protein disulfide isomerase-l	0.811	0.573	0.526	5e-84
118487805	452	unknown [Populus trichocarpa]	0.938	0.847	0.422	1e-83
255577405	434	protein disulfide isomerase, putative [R	0.875	0.822	0.479	9e-83
351722913	551	protein disulfide isomerase-like protein	0.828	0.613	0.498	7e-81
224113021	423	predicted protein [Populus trichocarpa]	0.953	0.919	0.430	9e-81

>gi|225449060|ref|XP_002275017.1| PREDICTED: protein disulfide isomerase-like 1-3-like isoform 1 [Vitis vinifera]

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 183/334 (54%), Positives = 232/334 (69%), Gaps = 9/334 (2%)

Query: 61  LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA 120
           L   NFSEF+ +N  VMV FYA WC   K LAPE+A AA  LKGEA L  VD   E  L 
Sbjct: 88  LKEANFSEFLERNPYVMVEFYAPWCGHCKALAPEYAEAATELKGEAVLAKVDGTEESGLM 147

Query: 121 KEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVE 180
            +Y +  +PTLY +  GV +  + G RT+D I AWV++KM  G ++ITTT EAE ILT E
Sbjct: 148 DKYEVQGFPTLYFYADGVHK-AYSGLRTKDAIVAWVKKKMESGIHNITTTVEAESILTTE 206

Query: 181 SKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLE 240
           SK+VLGFL  LEG ES+ELAAAS+L  DVNFYQT S +VA+ FHI  + KRPAL+ L  E
Sbjct: 207 SKIVLGFLDSLEGPESQELAAASRLEDDVNFYQTASPEVAKLFHIDQQVKRPALVLLKKE 266

Query: 241 AGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP-RKQLWLFAPAYGSDKV 299
           A K + F  QF + AIA FV   KHPLV+  T  +++ +F++P +KQL LFA +  S+ V
Sbjct: 267 AEKLSHFDGQFIKSAIAEFVFANKHPLVIIFTKESSRQIFENPIKKQLLLFATSKDSENV 326

Query: 300 ILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYV 358
           +  F+E AKA KGK   L+ VYVEM+++  G+ V+  FGV+G+APRV+AY+   DAKKYV
Sbjct: 327 LPQFQEAAKAFKGK---LIFVYVEMDNKD-GKSVADYFGVTGDAPRVLAYTGNDDAKKYV 382

Query: 359 LNGELTLSSIKSFGEEFLEDKL--LNQSDQISET 390
           L+GELTL+SIKSFGE+FLEDKL    +SD I ET
Sbjct: 383 LDGELTLTSIKSFGEDFLEDKLKRFYKSDPIPET 416

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104643|ref|XP_002313512.1| predicted protein [Populus trichocarpa] gi|222849920|gb|EEE87467.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (828), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 174/350 (49%), Positives = 240/350 (68%), Gaps = 9/350 (2%)

Query: 46  NNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE 105
           +++  P +  KDVV L   NFS+F+ KN+ VMV FYA WC   + LAPE+AAAA  LK E
Sbjct: 92  DSYKEPEIDDKDVVVLKEGNFSDFVTKNKFVMVEFYAPWCGHCQSLAPEYAAAATELKAE 151

Query: 106 -ADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGT 164
              L  VDA  E +LA+EY+I  +PT+Y FV GV +  + G R +D I  W+++K+  G 
Sbjct: 152 EVMLAKVDATEENELAQEYDIQGFPTVYFFVDGVHR-PYPGPRNKDGIVTWIKKKIGPGI 210

Query: 165 YSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFH 224
           Y+ITT D+AER+LT E+KLVLGFL+ L G ESEELAAAS+L  +V+FYQT + DVA+ FH
Sbjct: 211 YNITTVDDAERLLTSETKLVLGFLNSLVGPESEELAAASRLEDEVSFYQTVNPDVAKLFH 270

Query: 225 IHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP- 283
           + P++KRPAL+ L  EA K + F   F++  IA FV   K PLV   T  +A  +F+   
Sbjct: 271 LDPQAKRPALVMLKKEAEKLSVFDGNFSKSEIAEFVFANKLPLVTIFTRESAPLIFESTI 330

Query: 284 RKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA 343
           +KQL LFA +  S+KV+  F+E A+  KGK   L+ VYVEM++E VG+ VS+ FG+SG A
Sbjct: 331 KKQLLLFAISNDSEKVVPIFQEAARLFKGK---LIFVYVEMDNEDVGKPVSEYFGISGTA 387

Query: 344 PRVIAYSAR-DAKKYVLNGELTLSSIKSFGEEFLEDKL--LNQSDQISET 390
           P+V+AY+   DAKK+V +G++TL  IK+FGE+F+EDKL    +SD + E+
Sbjct: 388 PKVLAYTGNDDAKKFVFDGDVTLDKIKAFGEDFIEDKLKPFFKSDPVPES 437

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855039|emb|CAN82379.1| hypothetical protein VITISV_036230 [Vitis vinifera]

 Score =  322 bits (825), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 183/347 (52%), Positives = 231/347 (66%), Gaps = 22/347 (6%)

Query: 61  LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA 120
           L   NFSEF+ +N  VMV FYA WC   K LAPE+A AA  LKGEA L  VD   E  L 
Sbjct: 92  LKEANFSEFLERNPYVMVEFYAPWCGHCKALAPEYAEAATELKGEAVLAKVDGTEESGLM 151

Query: 121 KEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVE 180
            +Y +  +PTLY +  GV +  + G RT+D I AWV++KM  G ++ITTT EAE ILT E
Sbjct: 152 DKYEVQGFPTLYFYADGVHK-AYSGLRTKDAIVAWVKKKMESGIHNITTTVEAESILTTE 210

Query: 181 SKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLE 240
           SK+VLGFL  LEG ES+ELAAAS+L  DVNFYQT S +VA+ FHI  + KRPAL+ L  E
Sbjct: 211 SKIVLGFLDSLEGPESQELAAASRLEDDVNFYQTASPEVAKLFHIDQQVKRPALVLLKKE 270

Query: 241 AGKATPFR-------------HQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP-RKQ 286
           A K + F               QF + AIA FV   KHPLV   T  +++ +F++P +KQ
Sbjct: 271 AEKLSHFEGPLLILPIFMSTDGQFIKSAIAEFVFANKHPLVXIFTKESSRQIFENPIKKQ 330

Query: 287 LWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV 346
           L LFA +  S+ V+  F+E AKA KGK   L+ VYVEM+++  G+ V+  FGV+G+APRV
Sbjct: 331 LLLFATSKDSENVLPQFQEAAKAFKGK---LIFVYVEMDNKD-GKSVADYFGVTGDAPRV 386

Query: 347 IAYSAR-DAKKYVLNGELTLSSIKSFGEEFLEDKL--LNQSDQISET 390
           +AY+   DAKKYVL+GELTL+SIKSFGE+FLEDKL    +SD I ET
Sbjct: 387 LAYTGNDDAKKYVLDGELTLTSIKSFGEDFLEDKLKRFYKSDPIPET 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|151413538|gb|ABS11216.1| protein disulfide isomerase precursor [Oldenlandia affinis]

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 173/374 (46%), Positives = 248/374 (66%), Gaps = 11/374 (2%)

Query: 23  FPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYA 82
           FP  ++++DL+ +       + + +++ P +  KDVV L   NFS+F+  N+ V+V FYA
Sbjct: 14  FPNYENYDDLEDDDSAASSEDGHESYSPPPVDEKDVVVLKESNFSDFIANNKYVLVEFYA 73

Query: 83  NWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR 139
            WC   + LAPE+A AA  LK    E  L  VDA  + +LA++Y +  YPT+Y FV G+R
Sbjct: 74  PWCGHCQALAPEYAEAATELKNGGEEVVLAKVDATEDGELAQKYEVQGYPTIYFFVEGIR 133

Query: 140 QFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEEL 199
           +  + G+RT+D I +W+++K   G  +ITTT++AE IL  E+K+VLGFL  L G  S+EL
Sbjct: 134 K-PYTGQRTKDSIVSWLKKKTGPGLKNITTTEDAETILAAETKVVLGFLDALVGSSSDEL 192

Query: 200 AAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANF 259
           AAAS+L  DVNFYQT++ DVA+ FHI P++KRPAL+ +  EA K   F  QFT+  I++F
Sbjct: 193 AAASRLEEDVNFYQTSNPDVAKLFHIDPQAKRPALVLIKKEAEKINHFGGQFTKAEISDF 252

Query: 260 VTHTKHPLVVTLTIHNAQFVFQDP-RKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLL 318
           V   K PLV   T  +A  +F+ P +KQL LF  +  S+K++ TF+E AK  KGK   L+
Sbjct: 253 VYKNKLPLVTNFTRESAPLIFESPIKKQLILFTTSSDSEKILPTFQEAAKVFKGK---LI 309

Query: 319 HVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLNGELTLSSIKSFGEEFLE 377
            VYVE+++E VG+ VS  FGV G+AP+VIAY+   DA+K+ L+G++ LSSIK FGE+FL+
Sbjct: 310 FVYVELDNEDVGKPVSDYFGVQGDAPQVIAYTGNDDARKFKLDGDVILSSIKLFGEKFLQ 369

Query: 378 DKL--LNQSDQISE 389
           D L    +SD I E
Sbjct: 370 DDLKPFFKSDPIPE 383

Source: Oldenlandia affinis

Species: Oldenlandia affinis

Genus: Oldenlandia

Family: Rubiaceae

Order: Gentianales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086024|emb|CBI31465.3| unnamed protein product [Vitis vinifera]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 175/318 (55%), Positives = 222/318 (69%), Gaps = 9/318 (2%)

Query: 77  MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136
           MV FYA WC   K LAPE+A AA  LKGEA L  VD   E  L  +Y +  +PTLY +  
Sbjct: 1   MVEFYAPWCGHCKALAPEYAEAATELKGEAVLAKVDGTEESGLMDKYEVQGFPTLYFYAD 60

Query: 137 GVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMES 196
           GV +  + G RT+D I AWV++KM  G ++ITTT EAE ILT ESK+VLGFL  LEG ES
Sbjct: 61  GVHK-AYSGLRTKDAIVAWVKKKMESGIHNITTTVEAESILTTESKIVLGFLDSLEGPES 119

Query: 197 EELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAI 256
           +ELAAAS+L  DVNFYQT S +VA+ FHI  + KRPAL+ L  EA K + F  QF + AI
Sbjct: 120 QELAAASRLEDDVNFYQTASPEVAKLFHIDQQVKRPALVLLKKEAEKLSHFDGQFIKSAI 179

Query: 257 ANFVTHTKHPLVVTLTIHNAQFVFQDP-RKQLWLFAPAYGSDKVILTFEEVAKALKGKVN 315
           A FV   KHPLV+  T  +++ +F++P +KQL LFA +  S+ V+  F+E AKA KGK  
Sbjct: 180 AEFVFANKHPLVIIFTKESSRQIFENPIKKQLLLFATSKDSENVLPQFQEAAKAFKGK-- 237

Query: 316 MLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLNGELTLSSIKSFGEE 374
            L+ VYVEM+++  G+ V+  FGV+G+APRV+AY+   DAKKYVL+GELTL+SIKSFGE+
Sbjct: 238 -LIFVYVEMDNKD-GKSVADYFGVTGDAPRVLAYTGNDDAKKYVLDGELTLTSIKSFGED 295

Query: 375 FLEDKL--LNQSDQISET 390
           FLEDKL    +SD I ET
Sbjct: 296 FLEDKLKRFYKSDPIPET 313

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435313|ref|XP_002285136.1| PREDICTED: protein disulfide isomerase-like 1-4 isoform 1 [Vitis vinifera]

 Score =  317 bits (813), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 179/340 (52%), Positives = 237/340 (69%), Gaps = 9/340 (2%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE-ADLVMVDAY 114
           KDVV L  KNFS+ +  N+ VMV FYA WC   + LAPE+AAAA  LKGE   L  VDA 
Sbjct: 95  KDVVVLKEKNFSDVIENNQYVMVEFYAPWCGHCQALAPEYAAAATELKGEKVVLAKVDAT 154

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAE 174
            E +LA EY+I  +PT+Y F+ GV +  + G+RT+D I  W+++K+  G Y+ITT ++ E
Sbjct: 155 EESELAHEYDIQGFPTVYFFIDGVHK-PYPGQRTKDAIITWIKKKIGPGVYNITTIEDGE 213

Query: 175 RILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPAL 234
           RILT E+K+VLGFL  L G ESEEL+A SKL  DVNFYQT + DVA+ FHI PK KRPAL
Sbjct: 214 RILTSENKVVLGFLDSLVGPESEELSAGSKLEDDVNFYQTVNPDVAKLFHIDPKVKRPAL 273

Query: 235 IFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP-RKQLWLFAPA 293
           + L  EA K + F   FT+ AIA FV   K PLV T T  +A  +F+ P +KQL LFA A
Sbjct: 274 VLLKKEAEKLSHFNGNFTKSAIAEFVFANKLPLVTTFTRDSAPLIFESPIKKQLLLFATA 333

Query: 294 YGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR- 352
             S+KV+  F+E AK+ KGK+   + VYVEM++E +GR VS  FGV+G+AP+V+AY+   
Sbjct: 334 NDSEKVVPAFQEAAKSFKGKI---IFVYVEMDNEEIGRPVSDYFGVTGDAPKVLAYTGND 390

Query: 353 DAKKYVLNGELTLSSIKSFGEEFLEDKL--LNQSDQISET 390
           DA+K++L+GE+TL  +K+FGE+FLEDK+    +SD I E+
Sbjct: 391 DARKFILDGEVTLDKVKAFGEDFLEDKVKPFFKSDPIPES 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487805|gb|ABK95726.1| unknown [Populus trichocarpa]

 Score =  316 bits (810), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 184/436 (42%), Positives = 258/436 (59%), Gaps = 53/436 (12%)

Query: 8   LLLLTSSIILFKLYLFPP-------------------------TQSHEDLKAEPDELELT 42
           L L TS ++LF +  F P                         + +H+D+  + + LE  
Sbjct: 9   LFLFTSILLLFTILWFSPVSHLPSSLPLVLSFFKHQEDTFIFESNTHKDIYYD-EGLENQ 67

Query: 43  NLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML 102
             N+    P++  KDVV L  KNF +F+  N  VMV FYA WCYWS+KLAPE++AAA +L
Sbjct: 68  GTNSWPENPVVDEKDVVVLTEKNFGDFIATNPYVMVEFYAPWCYWSRKLAPEYSAAATLL 127

Query: 103 KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTL 162
           KGEA L  VDA +E  L ++Y I  YP+L LF  G+++  ++GERTRD I+ W+R+K  L
Sbjct: 128 KGEAVLAKVDATVEMGLGRKYKIQGYPSLLLFAGGIQKSSYYGERTRDAIATWMRQKNGL 187

Query: 163 GTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEF 222
              +++TT+EA RIL   S +V+GFL  LEG +++EL AAS+LH+D+NFYQT + DVA  
Sbjct: 188 VVQTVSTTEEANRILRTNSVIVMGFLDTLEGSDTKELTAASRLHADINFYQTDNVDVARL 247

Query: 223 FHIHPKSKRPALIFLHLEAGKAT--PFRHQFTRLAIANFVTHTKH--------------- 265
           F I P+ K PAL+ L  EA   +   F  QFT   I++FV+ TK+               
Sbjct: 248 FRIDPQIKPPALVMLKWEAANRSHVGFDGQFTESEISDFVS-TKNLQFTKSEISDSVSTN 306

Query: 266 --PLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVE 323
             P V+T T+ +A  +  +P KQLWLF+  Y S ++I TFEE AKA +   N L+ VYVE
Sbjct: 307 NAPSVITFTVDDASRILGNPMKQLWLFSTKY-SLELISTFEEAAKAFR---NKLVFVYVE 362

Query: 324 MNSE--GVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKLL 381
            +    G+G  ++ +FGV   +PRV+A  A +  KY+ +GE+T   IKSF EEFLED L 
Sbjct: 363 TDGTNLGLGANLAFQFGVPEGSPRVVACMA-NGDKYLYHGEMTFDGIKSFAEEFLEDNLS 421

Query: 382 NQSDQISETILKLPSQ 397
             S  IS++ L+LPS 
Sbjct: 422 IHSVPISKSALRLPSD 437

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577405|ref|XP_002529582.1| protein disulfide isomerase, putative [Ricinus communis] gi|223530958|gb|EEF32816.1| protein disulfide isomerase, putative [Ricinus communis]

 Score =  313 bits (802), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 178/371 (47%), Positives = 240/371 (64%), Gaps = 14/371 (3%)

Query: 37  DELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFA 96
           D+ E ++L+     P     DVV L   NFS+F+ +N+ VM+ FYA WCY+SKKLAP +A
Sbjct: 63  DDYEESSLDMQSVLPAFDENDVVVLAEHNFSDFVARNQYVMINFYAPWCYFSKKLAPVYA 122

Query: 97  AAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG---ERTRDVIS 153
           AAA MLKG+A L  +D   E +L + + I  YPT+Y  V G  Q   +    ERTR+ I 
Sbjct: 123 AAATMLKGKAVLAKIDCTQEIELGRMFKIKWYPTVYFLVGGGVQQVLYDPKEERTRNAIV 182

Query: 154 AWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQ 213
            WV  KM +G  ++T  ++AE +L  +  +VLG L   EG ESEELAA SKLH DV FYQ
Sbjct: 183 NWVNHKMNIGAQNLTILEDAECVLAAKPVMVLGLL---EGPESEELAAVSKLHMDVYFYQ 239

Query: 214 TTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTI 273
           T + DVA+ FHI  + KRP+L+ L  E    T F  QFTR AIA+FV+  K P V+T T+
Sbjct: 240 TANVDVAKLFHIDEQIKRPSLVLLKREGENHTHFEGQFTRSAIADFVSVYKVPSVITFTV 299

Query: 274 HNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG-VGRR 332
            +A  +F++P KQLWLF P  GS +V+  F++ A A KGK   LL V+VE+ +EG VGR 
Sbjct: 300 EDASNIFENPMKQLWLFTPD-GSCEVLSIFKDTANAFKGK---LLFVHVEIGNEGSVGRN 355

Query: 333 VSQEFGVSGNAPRVIA-YSARDA-KKYVLNGELTLSSIKSFGEEFLEDKLLNQSDQISET 390
           ++ EF V  +APRV+A Y+  D  KK+V +GELTL+ IKSF E+FLE K L ++++  ET
Sbjct: 356 LAYEFSVPEDAPRVVAQYNTVDGTKKHVYHGELTLNGIKSFAEQFLEGKFL-RTEKHMET 414

Query: 391 ILKLPSQSRAS 401
           +L+LPS S  S
Sbjct: 415 VLRLPSHSHTS 425

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722913|ref|NP_001238028.1| protein disulfide isomerase-like protein precursor [Glycine max] gi|50789207|dbj|BAD34455.1| protein disulfide isomerase-like protein [Glycine max] gi|171854982|dbj|BAG16715.1| protein disulfide isomerase L-2 [Glycine max]

 Score =  307 bits (786), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 174/349 (49%), Positives = 241/349 (69%), Gaps = 11/349 (3%)

Query: 48  HTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD 107
           +  P +  KDVV L  KNF++ +  NR VMV FYA WC   + LAPE+AAAA  LKGE D
Sbjct: 64  YKQPEVDEKDVVILKEKNFTDTVKSNRFVMVEFYAPWCGHCQALAPEYAAAATELKGE-D 122

Query: 108 LVM--VDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTY 165
           +++  VDA  E +LA++Y++  +PT+Y FV G+ +  + G+RT+D I  W+++K+  G Y
Sbjct: 123 VILAKVDATEENELAQQYDVQGFPTVYFFVDGIHK-PYNGQRTKDAIMTWIKKKIGPGIY 181

Query: 166 SITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHI 225
           ++TT ++A+RILT E+K+VLGFL+ L G ESEELAAAS+L  DVNFYQT   DVA+ FHI
Sbjct: 182 NLTTVEDAQRILTNETKVVLGFLNSLVGPESEELAAASRLEDDVNFYQTVDPDVAKLFHI 241

Query: 226 HPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP-R 284
            P  KRPALI +  E  K   F  +F +  IA+FV   K PLV   T  +A  VF++P +
Sbjct: 242 DPDVKRPALILVKKEEEKLNHFDGKFEKSEIADFVFSNKLPLVTIFTRESAPSVFENPIK 301

Query: 285 KQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP 344
           KQL LFA +  S+K+I  F+E AK+ KGK   L+ VYVEM++E VG+ VS+ FG+SGNAP
Sbjct: 302 KQLLLFATSNDSEKLIPAFKEAAKSFKGK---LIFVYVEMDNEDVGKPVSEYFGISGNAP 358

Query: 345 RVIAYSAR-DAKKYVLNGELTLSSIKSFGEEFLEDKL--LNQSDQISET 390
           +V+ Y+   D KK+VL+GE+T   IK+FG++FLEDKL    +SD + E+
Sbjct: 359 KVLGYTGNDDGKKFVLDGEVTADKIKAFGDDFLEDKLKPFYKSDPVPES 407

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113021|ref|XP_002316364.1| predicted protein [Populus trichocarpa] gi|222865404|gb|EEF02535.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (785), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 174/404 (43%), Positives = 241/404 (59%), Gaps = 15/404 (3%)

Query: 9   LLLTSSII----LFKLYLFPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGK 64
           +LLT +I     + +L  F     + DL   P+ + +  ++  +   L   KDV  L   
Sbjct: 15  ILLTFTIFYITPISELLFFKEVNDYNDLTKIPEFIPMPPVDCKNEKSLFDEKDVEVLTQN 74

Query: 65  NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN 124
           NFSEF+   ++VM+ FYA WC WS++LAPE+AAAA MLKGEA    +DA  E +L K + 
Sbjct: 75  NFSEFVAATQHVMLNFYAPWCVWSQRLAPEYAAAATMLKGEAVFAKIDATNEIELGKMFK 134

Query: 125 ILAYPTLYLFVAGVRQ---FQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVES 181
           I  YPT+YL V G  Q   +    ERT D ++ WVR+KM+    ++TT + AERIL   S
Sbjct: 135 IKEYPTMYLLVNGGVQKVTYDLTDERTTDAMTTWVRQKMSRAVQNVTTIEAAERILAARS 194

Query: 182 KLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA 241
            LV+GF   LEG +SEELAA +K H DVNFYQT +A+VA  F I P+ K+PAL+ L L+ 
Sbjct: 195 VLVMGFFGALEGSDSEELAAVAKQHIDVNFYQTANAEVARLFQIDPQIKQPALVMLKLKW 254

Query: 242 GKAT----PFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAYGSD 297
                    F  QFTR  I+NFV+  K P V+T +  +A  +F++P KQLWLFA  Y  +
Sbjct: 255 MTRNHNHFGFDCQFTRSEISNFVSENKLPSVITFSEEDAPNIFKNPMKQLWLFAATYPKE 314

Query: 298 KVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKY 357
            V+  F E A  LKGK   LL V+VE     + RRVS EFGV+   P ++ Y+A  A K+
Sbjct: 315 -VLAPFIEAADHLKGK---LLFVHVETEYNSMQRRVSYEFGVAEGLPTLVGYTANGADKH 370

Query: 358 VLNGELTLSSIKSFGEEFLEDKLLNQSDQISETILKLPSQSRAS 401
           V N +L+ + IK+F E+FLEDK  +Q     + ++KLP ++  S
Sbjct: 371 VYNSDLSFNGIKAFAEKFLEDKPPSQPSSTPDNVIKLPFRTHNS 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2082712	579	PDIL1-3 "PDI-like 1-3" [Arabid	0.823	0.580	0.475	1.1e-73
TAIR|locus:2175811	597	PDIL1-4 "PDI-like 1-4" [Arabid	0.821	0.561	0.436	8e-69
TAIR|locus:2018134	537	PDIL1-5 "PDI-like 1-5" [Arabid	0.759	0.577	0.313	3.9e-32
UNIPROTKB|P09102	515	P4HB "Protein disulfide-isomer	0.789	0.625	0.284	5.9e-31
TAIR|locus:2093447	534	PDIL1-6 "PDI-like 1-6" [Arabid	0.759	0.580	0.3	5.5e-30
ZFIN|ZDB-GENE-080610-1	509	p4hb "procollagen-proline, 2-o	0.774	0.620	0.278	1.4e-29
UNIPROTKB|P05307	510	P4HB "Protein disulfide-isomer	0.767	0.613	0.297	1.5e-29
MGI|MGI:97464	509	P4hb "prolyl 4-hydroxylase, be	0.774	0.620	0.283	1.9e-29
UNIPROTKB|A6H7J6	510	P4HB "Prolyl 4-hydroxylase, be	0.767	0.613	0.297	1.9e-29
RGD|3244	509	P4hb "prolyl 4-hydroxylase, be	0.774	0.620	0.283	4.2e-29

TAIR|locus:2082712 PDIL1-3 "PDI-like 1-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 163/343 (47%), Positives = 221/343 (64%)

Query:    51 PLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM 110
             P +  KDV  L   NF+EF+G N   MV FYA WC   + L PE+AAAA  LKG A L  
Sbjct:    94 PPVDEKDVAVLTKDNFTEFVGNNSFAMVEFYAPWCGACQALTPEYAAAATELKGLAALAK 153

Query:   111 VDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTT 170
             +DA  E DLA++Y I  +PT++LFV G  +  + GERT+D I  W+++K +   ++ITT 
Sbjct:   154 IDATEEGDLAQKYEIQGFPTVFLFVDGEMRKTYEGERTKDGIVTWLKKKASPSIHNITTK 213

Query:   171 DEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSK 230
             +EAER+L+ E KLV GFL+ L G ESEELAAAS+L  D++FYQT S D+A+ F I  + K
Sbjct:   214 EEAERVLSAEPKLVFGFLNSLVGSESEELAAASRLEDDLSFYQTASPDIAKLFEIETQVK 273

Query:   231 RPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWL 289
             RPAL+ L  E  K   F   FT+ AIA FV+  K PLV+  T   A  +F+   K QL L
Sbjct:   274 RPALVLLKKEEEKLARFDGNFTKTAIAEFVSANKVPLVINFTREGASLIFESSVKNQLIL 333

Query:   290 FAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAY 349
             FA A  S+K + T  EVAK+ KGK    + VYV+M++E  G  VS  FGV+G AP+V+ Y
Sbjct:   334 FAKANESEKHLPTLREVAKSFKGK---FVFVYVQMDNEDYGEAVSGFFGVTGAAPKVLVY 390

Query:   350 SAR-DAKKYVLNGELTLSSIKSFGEEFLEDKL--LNQSDQISE 389
             +   D +K++L+GELT+++IK+  E+FL DKL    +SD + E
Sbjct:   391 TGNEDMRKFILDGELTVNNIKTLAEDFLADKLKPFYKSDPLPE 433

GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0034976 "response to endoplasmic reticulum stress" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2175811 PDIL1-4 "PDI-like 1-4" [Arabidopsis thaliana (taxid:3702)]

 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 150/344 (43%), Positives = 219/344 (63%)

Query:    51 PLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD-LV 109
             P +  KDVV +  +NF++ +  N+ V+V FYA WC   + LAPE+AAAA  LK +   L 
Sbjct:    98 PEIDEKDVVVIKERNFTDVIENNQYVLVEFYAPWCGHCQSLAPEYAAAATELKEDGVVLA 157

Query:   110 MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITT 169
              +DA  E +LA+EY +  +PTL  FV G  +  + G RT++ I  WV++K+  G Y++TT
Sbjct:   158 KIDATEENELAQEYRVQGFPTLLFFVDGEHK-PYTGGRTKETIVTWVKKKIGPGVYNLTT 216

Query:   170 TDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKS 229
              D+AE++LT  +K+VLG+L+ L G+E ++L AASK   DVNFYQT + DVA+ FH+ P+S
Sbjct:   217 LDDAEKVLTSGNKVVLGYLNSLVGVEHDQLNAASKAEDDVNFYQTVNPDVAKMFHLDPES 276

Query:   230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP-RKQLW 288
             KRPAL+ +  E  K + F  +F + A+ +FV+  K  LV   T   A  +F+   +KQL 
Sbjct:   277 KRPALVLVKKEEEKISHFDGEFVKSALVSFVSANKLALVSVFTRETAPEIFESAIKKQLL 336

Query:   289 LFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIA 348
             LF     S+KV+  F+E AK+ KGK   L+ V V++++E  G+ V++ FGVSGN P++I 
Sbjct:   337 LFVTKNESEKVLTEFQEAAKSFKGK---LIFVSVDLDNEDYGKPVAEYFGVSGNGPKLIG 393

Query:   349 YSAR-DAKKYVLNGELTLSSIKSFGEEFLEDKL--LNQSDQISE 389
             Y+   D KKY  +GE+    IK FGE+FL DKL    +SD I E
Sbjct:   394 YTGNEDPKKYFFDGEIQSDKIKIFGEDFLNDKLKPFYKSDPIPE 437

GO:0005576 "extracellular region" evidence=ISM

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2018134 PDIL1-5 "PDI-like 1-5" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 3.9e-32, P = 3.9e-32
 Identities = 100/319 (31%), Positives = 149/319 (46%)

Query:    58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVM-VDAY 114
             V+ LNG      +  N  VMV+ YA WC  S +L P FA AA  LK  G + L+  +D  
Sbjct:    79 VLELNGDYTKRVIDGNEFVMVLGYAPWCARSAELMPRFAEAATALKEIGSSVLMAKIDGD 138

Query:   115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAE 174
                 +A E  I  +PTL LFV G       G    D++  WV++K      ++ T DEA 
Sbjct:   139 RYSKIASELEIKGFPTLLLFVNGTSLTYNGGSSAEDIV-IWVQKKTGAPIITLNTVDEAP 197

Query:   175 RILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPAL 234
             R L      VLG     EG E  E   A+K   ++ F +T  +DVA+      KS    +
Sbjct:   198 RFLDKYHTFVLGLFEKFEGSEHNEFVKAAKSDDEIQFIETRDSDVAKLLFPDLKSNNVFI 257

Query:   235 IFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWLFAPA 293
               +  EA + T +   +    I  F+   K PL   LT  N  +V+  P K Q+ LF+ A
Sbjct:   258 GLVKPEAERYTVYDGSYKMEKILEFLGSNKFPLFTKLTETNTVWVYSSPVKLQVMLFSKA 317

Query:   294 YGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV-SGNAPRVIAYSAR 352
                 K+    E++A+  K K   L+ +YV++ +E +       FG+ +GN   V A+   
Sbjct:   318 DDFQKLAQPLEDIARKFKSK---LMFIYVDITNENLAMPFLILFGIEAGNKTVVAAFDNN 374

Query:   353 DAKKYVLNGELTLSSIKSF 371
                KY+L  + + +SI+ F
Sbjct:   375 LNSKYLLESDPSPNSIEEF 393

GO:0009507 "chloroplast" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

UNIPROTKB|P09102 P4HB "Protein disulfide-isomerase" [Gallus gallus (taxid:9031)]

 Score = 323 (118.8 bits), Expect = 5.9e-31, Sum P(2) = 5.9e-31
 Identities = 97/341 (28%), Positives = 163/341 (47%)

Query:    51 PLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD--- 107
             PL     V+ L   NF + +  +R+++V FYA WC   K LAPE+A AA  LK E     
Sbjct:    24 PLEEEDGVLVLRAANFEQALAAHRHLLVEFYAPWCGHCKALAPEYAKAAAQLKAEGSEIR 83

Query:   108 LVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF--QFFGERTRDVISAWVREKMTLGTY 165
             L  VDA  E +LA+++ +  YPT+  F  G +    ++   R  D I +W++++      
Sbjct:    84 LAKVDATEEAELAQQFGVRGYPTIKFFRNGDKAAPREYTAGREADDIVSWLKKRTGPAAT 143

Query:   166 SITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHI 225
             ++T    AE ++     +V+GF  D+    ++E   A++   D+ F  ++SADV   F  
Sbjct:   144 TLTDAAAAETLVDSSEVVVIGFFKDVTSDAAKEFLLAAESVDDIPFGISSSADV---FSK 200

Query:   226 HPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK 285
             +  S+   ++F   + G+   F    T+  + NF+   + PLV+  T   A  +F    K
Sbjct:   201 YQLSQDGVVLFKKFDEGRNN-FEGDLTKDNLLNFIKSNQLPLVIEFTEQTAPKIFGGEIK 259

Query:   286 -QLWLFAPAYGSDKV--ILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN 342
               + LF P   SD    +  F+  A   KGK+   L ++++ +     +R+ + FG+   
Sbjct:   260 THILLFLPKSVSDYEGKLDNFKTAAGNFKGKI---LFIFIDSDHSD-NQRILEFFGLKKE 315

Query:   343 ---APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
                A R+I       K    + +LT   IK F  +FLE K+
Sbjct:   316 ECPAVRLITLEEEMTKYKPESDDLTADKIKEFCNKFLEGKI 356

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

TAIR|locus:2093447 PDIL1-6 "PDI-like 1-6" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 5.5e-30, P = 5.5e-30
 Identities = 96/320 (30%), Positives = 151/320 (47%)

Query:    58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVM-VDAY 114
             VV LNG N    +  N  VMV+ YA WC  S +L P FA AA  LK  G + L+  +D  
Sbjct:    77 VVELNGDNTKRLIDGNEYVMVLGYAPWCARSAELMPRFAEAATDLKEIGSSVLMAKIDGE 136

Query:   115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAE 174
                 +A +  I  +PTL LFV G  Q  + G  + + I  WV++K    T  + T DEA 
Sbjct:   137 RYSKVASQLEIKGFPTLLLFVNGTSQ-SYTGGFSSEEIVIWVQKKTGASTIKLDTVDEAS 195

Query:   175 RILTVESKLVLGFLHDLEGMES-EELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPA 233
               L      +LG     E     +E   A+ L +++ F +T+S DVA+    + K+    
Sbjct:   196 GFLKKHHTFILGLFEKSEDSSGHDEFVKAASLDNEIQFVETSSIDVAKLLFPNLKTNNVF 255

Query:   234 LIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWLFAP 292
             +  +  EA K T +        I  F+   K PLV  LT  N   V+  P K Q+ +F+ 
Sbjct:   256 VGLVKTEAEKYTSYDGPCQAEKIVEFLNSNKFPLVTKLTESNTVRVYSSPVKLQVMVFSK 315

Query:   293 AYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIA-YSA 351
                 + +    E++A+  K K+ ML  +Y+++++E +       FG+      V+A +  
Sbjct:   316 TDDFESLAQPLEDIARKFKSKL-ML--IYIDISNENLAMPFLTLFGIEDAKKTVVAAFDN 372

Query:   352 RDAKKYVLNGELTLSSIKSF 371
                 KY+L  + + S+I+ F
Sbjct:   373 NLNSKYLLESDPSPSNIEEF 392

GO:0009507 "chloroplast" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

ZFIN|ZDB-GENE-080610-1 p4hb "procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), beta polypeptide" [Danio rerio (taxid:7955)]

 Score = 330 (121.2 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 94/337 (27%), Positives = 165/337 (48%)

Query:    56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LVMVD 112
             +DV+ L   NF E +  + NV+V FYA WC   K LAPE++ AA MLK E     L  VD
Sbjct:    22 EDVLVLKKSNFEEALKAHPNVLVEFYAPWCGHCKALAPEYSKAAGMLKAEGSDIRLAKVD 81

Query:   113 AYLEKDLAKEYNILAYPTLYLFVAGVR---QFQFFGERTRDVISAWVREKMTLGTYSITT 169
             A  E +LA+E+ +  YPT+  F  G +   +    G +  D++S W++++      ++  
Sbjct:    82 ATEESELAQEFGVRGYPTIKFFKGGEKGNPKEYSAGRQAEDIVS-WLKKRTGPAATTLND 140

Query:   170 TDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKS 229
               +AE I+      V+GF  D+E  +S+     ++   D+ F  T+   V   F +   +
Sbjct:   141 VMQAESIIADNEVAVIGFFKDVESEDSKAFIKTAEAVDDIPFGITSDDSVFAKFEV---A 197

Query:   230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQ-DPRKQLW 288
             K   ++F   + G+ T F  + ++ ++ NF+   + PLV+  T   A  +F  D +  + 
Sbjct:   198 KDSVVLFKKFDEGRNT-FDGEVSKESLLNFIKANQLPLVIEFTEQTAPKIFGGDIKSHIL 256

Query:   289 LFAPAYGSD--KVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN-AP- 344
             +F P    D    +  F++ A+  KGK+   L ++++ + +   +R+ + FG+     P 
Sbjct:   257 MFVPKAAKDFQDKMDQFKKAAEGFKGKI---LFIFIDSDVDD-NQRILEFFGLKKEECPV 312

Query:   345 -RVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
              R+I       K    + E+T  +I SF   F+E  L
Sbjct:   313 IRLITLEEEMTKYKPESSEITAENIISFCTSFVEGTL 349

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

UNIPROTKB|P05307 P4HB "Protein disulfide-isomerase" [Bos taurus (taxid:9913)]

 Score = 330 (121.2 bits), Expect = 1.5e-29, P = 1.5e-29
 Identities = 100/336 (29%), Positives = 164/336 (48%)

Query:    58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LVMVDAY 114
             V+ L+  NF E +  ++ ++V FYA WC   K LAPE+A AA  LK E     L  VDA 
Sbjct:    28 VLVLHKGNFDEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 87

Query:   115 LEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMTLGTYSITTTDE 172
              E DLA++Y +  YPT+  F  G      ++   R  D I  W++++   G  + T +D 
Sbjct:    88 EESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRT--GPAASTLSDG 145

Query:   173 AERILTVESK--LVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSK 230
             A     VES    V+GF  D+E   +++   A+++  D+ F  T+++DV   F  +   K
Sbjct:   146 AAAEALVESSEVAVIGFFKDMESDSAKQFFLAAEVIDDIPFGITSNSDV---FSKYQLDK 202

Query:   231 RPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWL 289
                ++F   + G+   F  + T+  + +F+ H + PLV+  T   A  +F    K  + L
Sbjct:   203 DGVVLFKKFDEGRNN-FEGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILL 261

Query:   290 FAPAYGSDKV--ILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN---AP 344
             F P   SD    +  F++ A++ KGK+   L ++++ +     +R+ + FG+      A 
Sbjct:   262 FLPKSVSDYEGKLSNFKKAAESFKGKI---LFIFIDSDHTD-NQRILEFFGLKKEECPAV 317

Query:   345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
             R+I       K    + ELT   I  F   FLE K+
Sbjct:   318 RLITLEEEMTKYKPESDELTAEKITEFCHRFLEGKI 353

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

MGI|MGI:97464 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Mus musculus (taxid:10090)]

 Score = 329 (120.9 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 95/335 (28%), Positives = 160/335 (47%)

Query:    57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LVMVDA 113
             +V+ L   NF E +  ++ ++V FYA WC   K LAPE+A AA  LK E     L  VDA
Sbjct:    27 NVLVLKKSNFEEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAAKLKAEGSEIRLAKVDA 86

Query:   114 YLEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMTLGTYSITTTD 171
               E DLA++Y +  YPT+  F  G      ++   R  D I  W++++      +++ T 
Sbjct:    87 TEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLSDTA 146

Query:   172 EAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKR 231
              AE ++      V+GF  D+E   +++   A++   D+ F  T+++ V   F  +   K 
Sbjct:   147 AAESLVDSSEVTVIGFFKDVESDSAKQFLLAAEAIDDIPFGITSNSGV---FSKYQLDKD 203

Query:   232 PALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWLF 290
               ++F   + G+   F  + T+  + +F+ H + PLV+  T   A  +F    K  + LF
Sbjct:   204 GVVLFKKFDEGRNN-FEGEITKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLF 262

Query:   291 APAYGSDK--VILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN---APR 345
              P   SD    + +F+  A+  KGK+   L ++++ +     +R+ + FG+      A R
Sbjct:   263 LPKSVSDYDGKLSSFKRAAEGFKGKI---LFIFIDSDHTD-NQRILEFFGLKKEECPAVR 318

Query:   346 VIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
             +I       K    + ELT   I  F   FLE K+
Sbjct:   319 LITLEEEMTKYKPESDELTAEKITEFCHRFLEGKI 353

GO:0003756 "protein disulfide isomerase activity" evidence=ISO

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

UNIPROTKB|A6H7J6 P4HB "Prolyl 4-hydroxylase, beta subunit" [Bos taurus (taxid:9913)]

 Score = 329 (120.9 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 100/336 (29%), Positives = 163/336 (48%)

Query:    58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LVMVDAY 114
             V+ L+  NF E +  ++ ++V FYA WC   K LAPE+A AA  LK E     L  VDA 
Sbjct:    28 VLVLHKGNFDEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 87

Query:   115 LEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMTLGTYSITTTDE 172
              E DLA++Y +  YPT+  F  G      ++   R  D I  W++++   G  + T +D 
Sbjct:    88 EESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRT--GPAASTLSDG 145

Query:   173 AERILTVESK--LVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSK 230
             A     VES    V+GF  D+E   +++   A++   D+ F  T+++DV   F  +   K
Sbjct:   146 AAAEALVESSEVAVIGFFKDMESDSAKQFLLAAEAIDDIPFGITSNSDV---FSKYQLDK 202

Query:   231 RPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWL 289
                ++F   + G+   F  + T+  + +F+ H + PLV+  T   A  +F    K  + L
Sbjct:   203 DGVVLFKKFDEGRNN-FEGEVTKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILL 261

Query:   290 FAPAYGSDKV--ILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN---AP 344
             F P   SD    +  F++ A++ KGK+   L ++++ +     +R+ + FG+      A 
Sbjct:   262 FLPKSVSDYEGKLSNFKKAAESFKGKI---LFIFIDSDHTD-NQRILEFFGLKKEECPAV 317

Query:   345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
             R+I       K    + ELT   I  F   FLE K+
Sbjct:   318 RLITLEEEMTKYKPESDELTAEKITEFCHRFLEGKI 353

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

RGD|3244 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 326 (119.8 bits), Expect = 4.2e-29, P = 4.2e-29
 Identities = 95/335 (28%), Positives = 159/335 (47%)

Query:    57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LVMVDA 113
             +V+ L   NF+E +  +  ++V FYA WC   K LAPE+A AA  LK E     L  VDA
Sbjct:    27 NVLVLKKSNFAEALAAHNYLLVEFYAPWCGHCKALAPEYAKAAAKLKAEGSEIRLAKVDA 86

Query:   114 YLEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMTLGTYSITTTD 171
               E DLA++Y +  YPT+  F  G      ++   R  D I  W++++      +++ T 
Sbjct:    87 TEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLSDTA 146

Query:   172 EAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKR 231
              AE ++      V+GF  D     +++   A++   D+ F  T+++DV   F  +   K 
Sbjct:   147 AAESLVDSSEVTVIGFFKDAGSDSAKQFLLAAEAVDDIPFGITSNSDV---FSKYQLDKD 203

Query:   232 PALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWLF 290
               ++F   + G+   F  + T+  + +F+ H + PLV+  T   A  +F    K  + LF
Sbjct:   204 GVVLFKKFDEGRNN-FEGEITKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLF 262

Query:   291 APAYGSDK--VILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN---APR 345
              P   SD    +  F++ A+  KGK+   L ++++ +     +R+ + FG+      A R
Sbjct:   263 LPKSVSDYDGKLSNFKKAAEGFKGKI---LFIFIDSDHTD-NQRILEFFGLKKEECPAVR 318

Query:   346 VIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
             +I       K    + ELT   I  F   FLE K+
Sbjct:   319 LITLEEEMTKYKPESDELTAEKITQFCHHFLEGKI 353

GO:0003756 "protein disulfide isomerase activity" evidence=IMP

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=IMP

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018195001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (555 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	1e-47
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	7e-28
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	3e-26
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	3e-24
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	4e-21
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	2e-20
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	7e-20
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	3e-17
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	6e-16
cd02996	108	cd02996, PDI_a_ERp44, PDIa family, endoplasmic ret	2e-14
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	3e-14
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	9e-13
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	2e-12
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	1e-11
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	2e-11
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	4e-11
pfam13848	183	pfam13848, Thioredoxin_6, Thioredoxin-like domain	1e-10
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	8e-09
cd02981	97	cd02981, PDI_b_family, Protein Disulfide Isomerase	6e-08
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	9e-08
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	1e-07
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	8e-07
PRK10996	139	PRK10996, PRK10996, thioredoxin 2; Provisional	9e-07
PTZ00051	98	PTZ00051, PTZ00051, thioredoxin; Provisional	2e-06
cd02950	142	cd02950, TxlA, TRX-like protein A (TxlA) family; T	6e-06
cd02982	103	cd02982, PDI_b'_family, Protein Disulfide Isomeras	1e-05
cd02992	114	cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhyd	1e-05
cd02999	100	cd02999, PDI_a_ERp44_like, PDIa family, endoplasmi	1e-05
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	3e-05
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	4e-05
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	5e-05
cd02956	96	cd02956, ybbN, ybbN protein family; ybbN is a hypo	8e-05
COG3118	304	COG3118, COG3118, Thioredoxin domain-containing pr	1e-04
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	1e-04
pfam13848	183	pfam13848, Thioredoxin_6, Thioredoxin-like domain	3e-04
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	0.002
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	0.002
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	0.002

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  168 bits (427), Expect = 1e-47
 Identities = 93/336 (27%), Positives = 147/336 (43%), Gaps = 16/336 (4%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LVMVD 112
           +DV+ L   NF +F+  +  V+V FYA WC   K LAPE+  AA  LK +     L  VD
Sbjct: 1   EDVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVD 60

Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQ-FQFFGERTRDVISAWVREKMTLGTYSITTTD 171
           A  EKDLA++Y +  YPTL +F  G      + G R  D I  +++++       I T  
Sbjct: 61  ATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVA 120

Query: 172 EAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKR 231
           + E  L  +  +V+GF  DL+   ++   + ++   DV F+   S+DVA F  +      
Sbjct: 121 DLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFFFAHSSDVAAFAKLGAFPDS 180

Query: 232 PALIFLHLEAGKATPFRHQ--FTRLAIANFVTHTKHPLVVTLTIHNAQFVFQ-DPRKQLW 288
             L     E  K +    +       +  F+     PLV   T   A   F+  P   L+
Sbjct: 181 VVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLY 240

Query: 289 LFAPA--YGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN-APR 345
                     +++   F E AK  +GK      V   +  E    R  + FG+     P 
Sbjct: 241 YNVDESLDPFEELRNRFLEAAKKFRGKF-----VNFAVADEEDFGRELEYFGLKAEKFPA 295

Query: 346 VIAYSARDAKKYVLNG-ELTLSSIKSFGEEFLEDKL 380
           V        KKY ++  E +  ++++F ++FL+ KL
Sbjct: 296 VAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKL 331

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score =  105 bits (264), Expect = 7e-28
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 3/101 (2%)

Query: 59  VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDAYLE 116
           V L   NF E +  +++V+V FYA WC   K LAPE+   AK LKG+  +V+  VD    
Sbjct: 1   VELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN 60

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQ-FFGERTRDVISAWV 156
            DL  EY +  YPT+ LF  G ++   + G RT + +  ++
Sbjct: 61  NDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score =  101 bits (253), Expect = 3e-26
 Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 2/101 (1%)

Query: 61  LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDAYLEKD 118
           L   NF E +  N++V+V FYA WC   K LAPE+   AK LK + D+V+  VDA  EKD
Sbjct: 1   LTASNFDEIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKD 60

Query: 119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159
           LA  + +  +PT+  F  G +   + G R  + I  +V EK
Sbjct: 61  LASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEK 101

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score =  104 bits (260), Expect = 3e-24
 Identities = 74/294 (25%), Positives = 123/294 (41%), Gaps = 29/294 (9%)

Query: 53  LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LV 109
             ++ V  L    F +F+ +N  V+V FYA WC   K+LAPE+  AAKMLK +     L 
Sbjct: 29  FISEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLA 88

Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITT 169
            VDA  E +LA+E+ +  YPT+  F  G     + G RT D I +W+ +K+T    ++T 
Sbjct: 89  SVDATEEMELAQEFGVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWI-KKLT--GPAVTE 144

Query: 170 TDEAERILTVESKLVLGFLHDLEGMESEELAA----ASKLHSDVNFYQTTSADVAEFFHI 225
            + A  I  +  K+ + F  +    +SE        A K      F+        + + +
Sbjct: 145 VESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFFVKKHEGKNKIYVL 204

Query: 226 HPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK 285
           H   +      + L  GK        T+  +  FV+    PL   +   N +      + 
Sbjct: 205 HKDEEG-----VELFMGK--------TKEELEEFVSTESFPLFAEINAENYRRYISSGKD 251

Query: 286 QLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV 339
            +W        DK      +VA+ L+ K       +V +++E  G    +   +
Sbjct: 252 LVWFCGTTEDYDKYKSVVRKVARKLREKYA-----FVWLDTEQFGSHAKEHLLI 300

Length = 477

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 87.0 bits (216), Expect = 4e-21
 Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 2/102 (1%)

Query: 57  DVVSLNGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
           DVV L   NF + +  +    +V FYA WC   K LAPE+  AAK LKG   +  VDA +
Sbjct: 1   DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV 60

Query: 116 EKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRDVISAWV 156
            + LA++Y +  +PT+ +F AG      + G RT   I +  
Sbjct: 61  HQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 57  DVVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
            V  L  +NF E + K ++ V+V FYA WC   K LAPE+   A+  K +     VDA  
Sbjct: 1   VVKVLTDENFDEEVAKSDKPVLVDFYAPWCGPCKALAPEYEKLAQEYKDDVKFAKVDADE 60

Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
             DLA EY +  +PT+  F  G +   + G RT+D + A++++
Sbjct: 61  NPDLASEYGVRGFPTIKFFKNGKKVSDYVGARTKDDLVAFIKK 103

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 83.9 bits (208), Expect = 7e-20
 Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 4/103 (3%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDAY 114
           DVV L  ++F +F+ K ++V+VMFYA WC   KK+ PEF  AA  LK +   V+  VD  
Sbjct: 1   DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT 60

Query: 115 --LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW 155
                 L +EYN+  +PT   F  G    ++ GERT + I  +
Sbjct: 61  KPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEF 103

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 76.1 bits (188), Expect = 3e-17
 Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 5/105 (4%)

Query: 57  DVVSLNGKNFSEFMGKNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDA 113
           +VV L   NF + +G ++ +V+V FYA WC   K LAPE+   A +   E D+V+  VDA
Sbjct: 1   NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDA 60

Query: 114 -YLEKDLAKEYNILAYPTLYLFVAGVRQ-FQFFGERTRDVISAWV 156
               KDLAK+Y +  +PTL  F  G  +  ++ G R  + +  +V
Sbjct: 61  DEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 72.8 bits (179), Expect = 6e-16
 Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 12/109 (11%)

Query: 58  VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           V  L  KNF + +   N   +V FYA WC   K L PE+A AAK L G   +  VD   +
Sbjct: 2   VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDED 61

Query: 117 --KDLAKEYNILAYPTLYLFVAG-------VRQFQFFGERTRDVISAWV 156
             K L  +Y +  +PTL +F          V  +   GER+   I  +V
Sbjct: 62  KNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYN--GERSAKAIVDFV 108

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|239294 cd02996, PDI_a_ERp44, PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK------GEADLV 109
            ++VSL   N  + +     V+V FYA+WC +S+ L P F  AA  +K      G+    
Sbjct: 1   SEIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWG 60

Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAG 137
            VD   E D+A  Y I  YPTL LF  G
Sbjct: 61  KVDCDKESDIADRYRINKYPTLKLFRNG 88

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Length = 108

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 67.6 bits (166), Expect = 3e-14
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 64  KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY 123
           + F E +   + V+V F+A WC   K +AP     A+    +   V VD     +LA+EY
Sbjct: 1   EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEY 59

Query: 124 NILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
            + + PT   F  G    +  G   ++ +  ++
Sbjct: 60  GVRSIPTFLFFKNGKEVDRVVGADPKEELEEFL 92

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 63.7 bits (156), Expect = 9e-13
 Identities = 34/104 (32%), Positives = 60/104 (57%), Gaps = 6/104 (5%)

Query: 58  VVSLNGKNFSE-FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDAY 114
           V  + GKNF E  +  +++V+V FYA WC   K LAP +   A+ LKG+ ++V+  +DA 
Sbjct: 2   VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQF--QFFGERTRDVISAWV 156
              D+  E+ +  +PT+  F AG +    ++ G+RT + +  ++
Sbjct: 62  -ANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 61  LNGKNFSE-FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL 119
           L   NF E     ++ V+V F+A WC   K +AP     AK  +G+   V ++     D+
Sbjct: 1   LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI 60

Query: 120 AKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
           A +Y I + PTL LF  G    +  G   +  +   +
Sbjct: 61  AAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLI 97

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 63.5 bits (154), Expect = 1e-11
 Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 7/107 (6%)

Query: 55  AKDVVSLNGKNFSEFMGKNRNV-----MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLV 109
           A  +V LN KNF +    +         V FYA WC   +K+AP +   AK LKG+ ++ 
Sbjct: 29  ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVA 88

Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQF-FGERTRDVISAW 155
            +DA    +LAK + I  YPTL LF  G + +Q+  G+R+ + ++A+
Sbjct: 89  DLDATRALNLAKRFAIKGYPTLLLFDKG-KMYQYEGGDRSTEKLAAF 134

Length = 224

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAA-AAKMLKGEAD--LVMVDAY 114
           V+ L   NF        N  V F+A WC   K+LAP +   A K         +  VD  
Sbjct: 2   VLELTEDNFDH-HIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT 60

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
             ++L  E+ +  YPTL LF  G +  ++ G R  D +  +V
Sbjct: 61  QHRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 58  VVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           V++L  ++F E  + +    +V FYA WC   + L PE   AA+ LKG+  +  VD    
Sbjct: 3   VITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY 62

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQ-FFGE-RTRDVISAWV 156
           + L ++ NI AYPT+ L+     ++  + G  R  D I  ++
Sbjct: 63  ESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 17/179 (9%)

Query: 199 LAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRH--QFTRLAI 256
             AA +L  DV F  T   +VA+ + I    K P ++       K   +    + T   +
Sbjct: 13  EKAAKELRGDVRFGVTFDKEVAKKYGI----KEPTILLFRKFDEKQVTYPGEDKTTFDDL 68

Query: 257 ANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAY--GSDKVILTFEEVAKALKGKV 314
             F+     PLV   T  NA+ +F+   K L LF       ++K+    EEVAK  KGK+
Sbjct: 69  KKFIQKNSLPLVGEFTPENAEELFESG-KPLLLFIKKDSEETEKLKNRVEEVAKKFKGKI 127

Query: 315 NMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAY--SARDAKKYVLNGELTLSSIKSF 371
           N     +  ++ +  GR + +  G+S     VI    SA   KKY    E +  S+K F
Sbjct: 128 N-----FATVDGKSFGRVL-EYLGLSSADLPVIVIVDSASHKKKYFPEDEFSPESLKEF 180

Length = 183

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 77  MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV---DAYLEKDLAKEYNILAYPTLYL 133
           +V FYA WC   KKL P +      LK     V V   DA     +A E+ +  YPT+  
Sbjct: 19  LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTI-K 77

Query: 134 FVAGVRQFQFFGERTRDVI 152
            + G   + + G RT+D I
Sbjct: 78  LLKGDLAYNYRGPRTKDDI 96

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|239279 cd02981, PDI_b_family, Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 167 ITTTDEAERILTVESKLVLGFLHDLEGMESEEL-AAASKLHSDVNFYQTTSADVAEFFHI 225
           +T+ +E E+ L  +  +V+GF  D E  E +     A  L  D  F  T+  +VA+    
Sbjct: 4   LTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAK---- 59

Query: 226 HPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFV 260
             K K  +++       +   +  +FT  ++  F+
Sbjct: 60  KLKVKPGSVVLFKPFEEEPVEYDGEFTEESLVEFI 94

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive b domains are implicated in substrate recognition. Length = 97

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 57  DVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVM--VD 112
            V  L GKNF E  + + ++V+V FYA WC   K LAP +   A+  K  E+D+V+  +D
Sbjct: 347 PVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMD 406

Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQ--FQFFGERTRDVISAWVRE 158
           A    D+   + +  +PT+    AG +     + G+RT +  S ++ +
Sbjct: 407 A-TANDVP-PFEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAK 452

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 17/103 (16%)

Query: 71  GKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAY------------- 114
           G  + V+V+F    C + KKL  E        + LK    ++ V+               
Sbjct: 3   GNGKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDSKEVTDFDGETL 62

Query: 115 LEKDLAKEYNILAYPTLYLFVA-GVRQFQFFGERTRDVISAWV 156
            EK+LA++Y +   PT+      G    +  G    +     +
Sbjct: 63  SEKELARKYGVRGTPTIVFLDGDGKEVARLPGYLPPEEFLKLL 105

Length = 105

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 47.6 bits (112), Expect = 8e-07
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 55  AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA- 113
           A     L+G   S    K + V+V F+A WC   +  AP     A+   G+ ++V V+  
Sbjct: 14  AASFEELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVD 73

Query: 114 YLEKDLAKEYN--ILAYPTLYLFVAGVRQFQFFGER 147
               DLA E+   + + PTL LF  G    +  G +
Sbjct: 74  DENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGK 109

Length = 127

>gnl|CDD|182889 PRK10996, PRK10996, thioredoxin 2; Provisional

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 22/87 (25%), Positives = 43/87 (49%)

Query: 53  LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112
           L+  +V++  G+   + +  +  V++ F+A WC   +  AP F   A    G+   V V+
Sbjct: 32  LFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVN 91

Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVR 139
              E++L+  + I + PT+ +F  G  
Sbjct: 92  TEAERELSARFRIRSIPTIMIFKNGQV 118

Length = 139

>gnl|CDD|173347 PTZ00051, PTZ00051, thioredoxin; Provisional

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)

Query: 66  FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK--DLAKEY 123
           F   + +N  V+V FYA WC   K++AP +   +K       +V V   +++  ++A++ 
Sbjct: 11  FESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKE---YTKMVFVKVDVDELSEVAEKE 67

Query: 124 NILAYPTLYLFVAGVRQFQFFG 145
           NI + PT  +F  G       G
Sbjct: 68  NITSMPTFKVFKNGSVVDTLLG 89

Length = 98

>gnl|CDD|239248 cd02950, TxlA, TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 73  NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK--DLAKEYNILAYPT 130
            +  +V FYA+WC   +++AP+ A   +    + + VM++    K       Y +   P 
Sbjct: 20  GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPH 79

Query: 131 LYLFVA-GVRQFQFFGERTRDVISA 154
                  G  + Q  G + + V++ 
Sbjct: 80  FVFLDREGNEEGQSIGLQPKQVLAQ 104

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport. Length = 142

>gnl|CDD|239280 cd02982, PDI_b'_family, Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 10/98 (10%)

Query: 283 PRKQLWLFAPA--YGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVS 340
            +  L LF       S+++   F+EVAK  KGK+   + V  +        R  + FG+ 
Sbjct: 12  GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLL-FVVVDADDFG-----RHLEYFGLK 65

Query: 341 G-NAPRVIAYSARDAKKYVL-NGELTLSSIKSFGEEFL 376
             + P +   +  D KKY++   ELT  S++ F E+FL
Sbjct: 66  EEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDFL 103

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive domains are implicated in substrate recognition with the b' domain serving as the primary substrate binding site. Only the b' domain is necessary for the binding of small peptide substrates. In addition to the b' domain, other domains are required for the binding of larger polypeptide substrates. The b' domain is also implicated in chaperone activity. Length = 103

>gnl|CDD|239290 cd02992, PDI_a_QSOX, PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 58  VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM---VDA 113
           V+ L+  +F S  +G     +V FYA+WC   +  AP +   A+ L+    +V    VD 
Sbjct: 3   VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDC 62

Query: 114 YLEK--DLAKEYNILAYPTLYLF 134
             E+   L +++ +  YPTL  F
Sbjct: 63  ADEENVALCRDFGVTGYPTLRYF 85

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate -> dithiol of the QSOX TRX domain -> dithiols of the QSOX ERV1p domain -> FAD -> oxygen. Length = 114

>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 68  EFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNI 125
           + M  NR     V+FYA+WC +S    P F A + M      L + ++ ++  L   Y +
Sbjct: 11  DLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV 70

Query: 126 LAYPTLYLFVAGVRQFQFFGERTRDVIS 153
           + +PT+ LF +  R  ++ G  TR + S
Sbjct: 71  VGFPTILLFNSTPR-VRYNG--TRTLDS 95

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER. Length = 100

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 23/94 (24%), Positives = 50/94 (53%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           ++V+L+  +F   +       V FY+  C     LAP +   AK + G   +  V+   +
Sbjct: 2   EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD 61

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD 150
           + L +   + +YP+LY+F +G+   +++G+R+++
Sbjct: 62  RMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKE 95

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 58  VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDAY 114
           V  + G  F E +   +++V++  YA WC   K L P +    +  K    +++  ++  
Sbjct: 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGT 418

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQ-FQFFGERT 148
             +   +E++  A+PT+    AG R    + GERT
Sbjct: 419 ANETPLEEFSWSAFPTILFVKAGERTPIPYEGERT 453

Length = 477

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 40.8 bits (95), Expect = 5e-05
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 77  MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---EKDLAKEYNILAYPTLYL 133
           +V+FYA WC + + L P  A  A + KG      VD       +   K Y +   PTL +
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNKG-VKFEAVDVDEDPALEKELKRYGVGGVPTLVV 59

Query: 134 FVAGVRQFQF 143
           F  G+     
Sbjct: 60  FGPGIGVKYG 69

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239254 cd02956, ybbN, ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 65  NFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE 122
           NF + +       V+V F+A     SK+L P     A+  +G+  L  V+   +  +A++
Sbjct: 2   NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQ 61

Query: 123 YNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
           + + A PT+YLF AG     F G +  + +   +
Sbjct: 62  FGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQML 95

Its gene has been sequenced from several gammaproteobacteria and actinobacteria. Length = 96

>gnl|CDD|225660 COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 23/136 (16%)

Query: 76  VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
           V+V F+A WC   K+L P     A   KG+  L  V+   E  +A ++ + + PT+Y F 
Sbjct: 46  VLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFK 105

Query: 136 AG--VRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEG 193
            G  V  FQ  G +    +  ++                 +++L  E +  L      E 
Sbjct: 106 DGQPVDGFQ--GAQPESQLRQFL-----------------DKVLPAEEEEALA--EAKEL 144

Query: 194 MESEELAAASKLHSDV 209
           +E+E+   A+ L    
Sbjct: 145 IEAEDFGEAAPLLKQA 160

Length = 304

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEA---DLVMVDA 113
           +VV L   N++  +      M+ FYA WC   ++L PE+   A     +    ++  VD 
Sbjct: 2   NVVELTDSNWTLVL--EGEWMIEFYAPWCPACQQLQPEWEEFAD--WSDDLGINVAKVDV 57

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRDVISAWVRE 158
             E  L+  + + A PT+Y    GV R++Q  G R ++ + +++ E
Sbjct: 58  TQEPGLSGRFFVTALPTIYHAKDGVFRRYQ--GPRDKEDLISFIEE 101

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 88  SKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF--- 144
              L   F  AAK L+G+    +     +K++AK+Y I   PT+ LF     +   +   
Sbjct: 5   DDPLYEIFEKAAKELRGDVRFGVTF---DKEVAKKYGI-KEPTILLFRKFDEKQVTYPGE 60

Query: 145 GERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEE------ 198
            + T D +  ++++   L      T + AE +   ES   L  L   +  E  E      
Sbjct: 61  DKTTFDDLKKFIQKNS-LPLVGEFTPENAEELF--ESGKPL-LLFIKKDSEETEKLKNRV 116

Query: 199 LAAASKLHSDVNFYQTTSADVAEFFHIH-----PKSKRPAL-IFLHLEAGKATPFRHQFT 252
              A K    +NF    + D   F  +        +  P + I       K      +F+
Sbjct: 117 EEVAKKFKGKINF---ATVDGKSFGRVLEYLGLSSADLPVIVIVDSASHKKKYFPEDEFS 173

Query: 253 RLAIANFV 260
             ++  F+
Sbjct: 174 PESLKEFL 181

Length = 183

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 56  KDVVSLNGKNFSEFMG---KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112
           + VV+L+            +N++ +V+ YA WC + + +   +   A+ L G    V V 
Sbjct: 1   EAVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVA 58

Query: 113 AY----LEKDLAKEYNILA-YPTLYLFVAGVRQFQFFGERTRDV--ISAWV 156
            +     +++ AKE   L  +PT+  F    RQ   +    RDV  +  +V
Sbjct: 59  KFNADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 28/85 (32%)

Query: 76  VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV------------------------ 111
           V++ F+A+WC   +   PE     + LK +  + +V                        
Sbjct: 4   VLLYFWASWCPPCRAFTPELKELYEKLK-KPKVEIVYVSLDRDEEEWKKYLKKMPKDWLN 62

Query: 112 ---DAYLEKDLAKEYNILAYPTLYL 133
                    +L + Y + A PTL L
Sbjct: 63  VPFGDKERNELLRLYGVKAIPTLVL 87

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 24/99 (24%)

Query: 60  SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-----------EADL 108
            L+GK  S    K + V+V F+A+WC   +   PE  A AK  K            + D 
Sbjct: 6   DLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDP 65

Query: 109 VMVDAYLEK-------------DLAKEYNILAYPTLYLF 134
             V A+L+K             +LAK Y +   PT +L 
Sbjct: 66  AAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLI 104

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	100.0
PTZ00102	477	disulphide isomerase; Provisional	100.0
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	100.0
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	100.0
KOG4277	468	consensus Uncharacterized conserved protein, conta	100.0
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	100.0
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.92
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.91
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.9
PRK10996	139	thioredoxin 2; Provisional	99.9
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.89
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.89
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.89
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.88
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.87
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.87
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.87
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.87
PHA02278	103	thioredoxin-like protein	99.87
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.86
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.86
PRK09381	109	trxA thioredoxin; Provisional	99.86
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.86
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.86
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.85
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.85
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.85
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.85
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.85
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.84
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.84
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.84
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.84
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.83
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.83
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.83
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.83
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.81
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.8
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.8
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.8
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.8
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.8
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.79
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.79
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.79
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.78
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.78
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.77
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.77
PTZ00051	98	thioredoxin; Provisional	99.75
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.74
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.73
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.73
PLN02309	457	5'-adenylylsulfate reductase	99.73
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.73
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.72
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.72
PTZ00102	477	disulphide isomerase; Provisional	99.71
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.71
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.7
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.7
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.7
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.69
PTZ00062	204	glutaredoxin; Provisional	99.69
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.66
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.65
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.64
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.63
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.61
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.61
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.61
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.6
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.57
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.57
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.56
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.54
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.53
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.52
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	99.5
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.5
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.49
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.46
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.45
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.45
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.44
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.44
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.44
PHA02125	75	thioredoxin-like protein	99.44
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.43
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.43
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.43
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.42
PTZ00056	199	glutathione peroxidase; Provisional	99.41
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.39
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.39
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.39
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.37
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.37
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.37
PLN02412	167	probable glutathione peroxidase	99.34
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.33
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	99.32
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.31
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.3
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.29
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.28
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.25
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	99.25
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.21
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	99.17
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.17
PTZ00256	183	glutathione peroxidase; Provisional	99.17
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.15
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	99.14
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	99.1
smart00594	122	UAS UAS domain.	99.08
COG2143	182	Thioredoxin-related protein [Posttranslational mod	99.08
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	99.07
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.07
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.07
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	99.06
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	99.05
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.04
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	99.02
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.01
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	99.01
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.98
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.96
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.95
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.95
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.89
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.88
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.88
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.87
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.85
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	98.83
PRK13190	202	putative peroxiredoxin; Provisional	98.81
PRK10606	183	btuE putative glutathione peroxidase; Provisional	98.79
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.77
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	98.75
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.72
PRK15000	200	peroxidase; Provisional	98.71
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.69
PF13728	215	TraF: F plasmid transfer operon protein	98.66
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.66
PTZ00137	261	2-Cys peroxiredoxin; Provisional	98.63
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.63
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	98.61
PRK13599	215	putative peroxiredoxin; Provisional	98.6
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.6
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.6
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.58
PRK13189	222	peroxiredoxin; Provisional	98.58
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.56
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	98.56
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.55
PRK13191	215	putative peroxiredoxin; Provisional	98.55
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.5
PTZ00253	199	tryparedoxin peroxidase; Provisional	98.5
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.49
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.49
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.48
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.44
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.44
KOG4277	468	consensus Uncharacterized conserved protein, conta	98.43
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.43
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.42
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.41
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.4
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	98.39
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.36
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.36
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.35
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	98.33
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.31
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.31
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.3
KOG1672	211	consensus ATP binding protein [Posttranslational m	98.29
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.27
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.26
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	98.25
PRK11200	85	grxA glutaredoxin 1; Provisional	98.25
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	98.21
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	98.2
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.17
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.17
PRK09381	109	trxA thioredoxin; Provisional	98.17
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.15
PHA02278	103	thioredoxin-like protein	98.15
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.15
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.14
PRK10996	139	thioredoxin 2; Provisional	98.14
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.13
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	98.12
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	98.08
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	98.07
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.07
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.05
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.05
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.05
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.04
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.02
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	98.0
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.98
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	97.98
cd03071	116	PDI_b'_NRX PDIb' family, NRX subgroup, redox inact	97.97
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.97
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	97.94
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	97.93
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	97.92
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.92
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.92
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	97.89
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.84
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.82
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.82
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.81
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.79
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	97.79
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	97.76
PTZ00051	98	thioredoxin; Provisional	97.75
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	97.73
PLN02309	457	5'-adenylylsulfate reductase	97.72
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	97.72
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	97.7
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.68
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.67
cd03070	91	PDI_b_ERp44 PDIb family, ERp44 subfamily, first re	97.66
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.64
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.64
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	97.62
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.61
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	97.6
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.57
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.55
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	97.52
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	97.51
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	97.51
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	97.49
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.47
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.45
PTZ00062	204	glutaredoxin; Provisional	97.43
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	97.42
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	97.41
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	97.36
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.34
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.34
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.3
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.29
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	97.27
PRK10329	81	glutaredoxin-like protein; Provisional	97.24
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.21
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	97.15
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	97.15
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	97.14
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	97.13
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	97.11
PHA03050	108	glutaredoxin; Provisional	97.1
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	97.09
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	97.06
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	97.04
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	97.03
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	97.02
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.01
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	96.98
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	96.92
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.92
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	96.9
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	96.89
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	96.77
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	96.64
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	96.59
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	96.57
PF13743	176	Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.	96.56
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	96.47
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.46
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	96.38
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	96.36
KOG2640	319	consensus Thioredoxin [Function unknown]	96.25
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	96.2
KOG3170	240	consensus Conserved phosducin-like protein [Signal	96.11
PRK10638	83	glutaredoxin 3; Provisional	96.08
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	96.0
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	95.96
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	95.82
COG1331	667	Highly conserved protein containing a thioredoxin	95.69
PRK10824	115	glutaredoxin-4; Provisional	95.68
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	95.24
KOG3171	273	consensus Conserved phosducin-like protein [Signal	95.19
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	95.09
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	94.93
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	94.92
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	94.38
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	94.33
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	93.91
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	93.86
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	93.53
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	93.53
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	93.48
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	93.34
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	93.06
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	92.56
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	92.48
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	92.21
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	92.01
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	91.84
PRK13728	181	conjugal transfer protein TrbB; Provisional	91.64
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	91.35
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	91.26
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	91.19
smart00594	122	UAS UAS domain.	90.7
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	90.7
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	90.65
PF13728	215	TraF: F plasmid transfer operon protein	90.27
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	90.26
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	90.21
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	90.13
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	89.98
PRK09301	103	circadian clock protein KaiB; Provisional	89.3
cd02978	72	KaiB_like KaiB-like family; composed of the circad	89.14
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	88.81
COG3019	149	Predicted metal-binding protein [General function	88.72
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	88.59
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	88.57
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	88.2
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	87.71
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	87.39
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	87.02
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	86.71
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	86.62
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	85.4
TIGR00762	275	DegV EDD domain protein, DegV family. This family	85.39
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	85.25
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	84.91
PHA03075	123	glutaredoxin-like protein; Provisional	84.31
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	84.23
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	84.11
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	83.87
KOG1672	211	consensus ATP binding protein [Posttranslational m	82.65
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	82.14
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	82.05
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	81.99
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	81.64

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-52  Score=382.76  Aligned_cols=345  Identities=31%  Similarity=0.461  Sum_probs=305.8

Q ss_pred             cCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      ....+..|+.++|+..+..+..++|.||||||+||++++|+++++++.++.   .+.+++|||+++.++|.+|+|+||||
T Consensus        23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT  102 (493)
T KOG0190|consen   23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT  102 (493)
T ss_pred             cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence            346899999999999999999999999999999999999999999999977   79999999999999999999999999


Q ss_pred             EEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHhccCCcee
Q 015368          131 LYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVN  210 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a~~~~~~~  210 (408)
                      +.+|+||+....|.|+++++.|..|+.+..+|.+..+.+.++.+.++...+..+|+||.+..+.....+..++.+..++.
T Consensus       103 lkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~  182 (493)
T KOG0190|consen  103 LKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDYK  182 (493)
T ss_pred             EEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccccce
Confidence            99999996679999999999999999999999999999999999999999999999999877777444555669999999


Q ss_pred             EEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeeccccccccccCCcc-EEEE
Q 015368          211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWL  289 (408)
Q Consensus       211 f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~-~~i~  289 (408)
                      |+++++.+++.+++.... +.+.+++++..+.....|.|.++.+.|.+||..++.|++..+|.++...++.+..+ .+++
T Consensus       183 F~~ts~~~~~~~~~~~~~-~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~  261 (493)
T KOG0190|consen  183 FAHTSDSDVAKKLELNTE-GTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDF  261 (493)
T ss_pred             eeccCcHhHHhhccCCCC-CcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeE
Confidence            999999999999998732 14558889988888889999999999999999999999999999999998888663 3445


Q ss_pred             EeeCC--CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCc-EEEEEccCCccccCCC-CCCh
Q 015368          290 FAPAY--GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR-VIAYSARDAKKYVLNG-ELTL  365 (408)
Q Consensus       290 f~~~~--~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p-~i~i~~~~~~~y~~~~-~~~~  365 (408)
                      |.+..  ..+.+++.++++|++|+++   ++|+++|..+.  . +.+..||+....+| .+++.+..+.+|.+++ ..+.
T Consensus       262 ~~~~~~~~~e~~~~~~~~vAk~f~~~---l~Fi~~d~e~~--~-~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~  335 (493)
T KOG0190|consen  262 FVFFKCNRFEELRKKFEEVAKKFKGK---LRFILIDPESF--A-RVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQ  335 (493)
T ss_pred             EeccccccHHHHHHHHHHHHHhcccc---eEEEEEChHHh--h-HHHHhcCcccccCCeeEEeeccccccccCccccccH
Confidence            55433  5889999999999999999   99999975543  4 47799999877777 4555555889999977 4888


Q ss_pred             HHHHHHHHHHhcCcc--ccccccCchh-----hhcCccCCccceeee
Q 015368          366 SSIKSFGEEFLEDKL--LNQSDQISET-----ILKLPSQSRASYQLR  405 (408)
Q Consensus       366 ~~i~~Fi~~~~~gk~--~~kse~iP~~-----~~~~~~~~~~~~~~~  405 (408)
                      ++|..|+.++++|++  ++||||||++     ++.+|++||+++++.
T Consensus       336 ~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~d  382 (493)
T KOG0190|consen  336 ENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLD  382 (493)
T ss_pred             HHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhc
Confidence            899999999999999  9999999998     556799999999875

>PTZ00102 disulphide isomerase; Provisional

Probab=100.00  E-value=4.2e-44  Score=348.64  Aligned_cols=329  Identities=23%  Similarity=0.373  Sum_probs=281.0

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      ..+..++.++|+..+.++++++|+|||+||++|+++.|.|.++++.+++   ++.++.|||+++.++|++|+|.++||++
T Consensus        32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~  111 (477)
T PTZ00102         32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK  111 (477)
T ss_pred             CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence            5788999999999998899999999999999999999999999988754   6999999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeE
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNF  211 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f  211 (408)
                      +|++|+.. +|.|.++.+.|.+|+.+.+++++..+.+.+++..+.+.....+++++...++.....|.++| .++....|
T Consensus       112 ~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F  190 (477)
T PTZ00102        112 FFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKF  190 (477)
T ss_pred             EEECCceE-EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceE
Confidence            99988655 99999999999999999999999999999998887777778888888877778888898888 67777888


Q ss_pred             EEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeeccccccccccCCccEEEEEe
Q 015368          212 YQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFA  291 (408)
Q Consensus       212 ~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i~f~  291 (408)
                      +...+.            ..+.+.+++..+.....|.| .+.++|.+||..+++|++.+++.+++..++..+.+.++++.
T Consensus       191 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~  257 (477)
T PTZ00102        191 FVKKHE------------GKNKIYVLHKDEEGVELFMG-KTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCG  257 (477)
T ss_pred             EEEcCC------------CCCcEEEEecCCCCcccCCC-CCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEec
Confidence            765432            24778888876655545555 48899999999999999999999999999988877666655


Q ss_pred             eCCCchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCCC----CChHH
Q 015368          292 PAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGE----LTLSS  367 (408)
Q Consensus       292 ~~~~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~----~~~~~  367 (408)
                      ..++.+++.+.++++|++++++   +.|+++|+...  ..++++.+|+..  .|.+++.+..+ +|.+.+.    ++.+.
T Consensus       258 ~~~~~~~~~~~~~~~A~~~~~~---~~f~~vd~~~~--~~~~~~~~gi~~--~P~~~i~~~~~-~y~~~~~~~~~~~~~~  329 (477)
T PTZ00102        258 TTEDYDKYKSVVRKVARKLREK---YAFVWLDTEQF--GSHAKEHLLIEE--FPGLAYQSPAG-RYLLPPAKESFDSVEA  329 (477)
T ss_pred             CHHHHHHHHHHHHHHHHhccCc---eEEEEEechhc--chhHHHhcCccc--CceEEEEcCCc-ccCCCccccccCCHHH
Confidence            4445667889999999999999   99999998764  334778999964  68888887544 6666543    78999


Q ss_pred             HHHHHHHHhcCcc--ccccccCchh----hhcCccCCccceeeec
Q 015368          368 IKSFGEEFLEDKL--LNQSDQISET----ILKLPSQSRASYQLRT  406 (408)
Q Consensus       368 i~~Fi~~~~~gk~--~~kse~iP~~----~~~~~~~~~~~~~~~~  406 (408)
                      |.+|++++++|++  +++|||+|++    +.+++++||++.++++
T Consensus       330 l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~  374 (477)
T PTZ00102        330 LIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKS  374 (477)
T ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcC
Confidence            9999999999999  8999999976    8889999999887654

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=100.00  E-value=1.7e-43  Score=343.69  Aligned_cols=339  Identities=25%  Similarity=0.390  Sum_probs=292.2

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      .+..++.++|+..+.++++++|+|||+||++|+++.|.+.++++.+++   ++.|+.|||++++++|++|+|.++||+++
T Consensus         2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~   81 (462)
T TIGR01130         2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI   81 (462)
T ss_pred             CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence            577899999999999999999999999999999999999999998865   49999999999999999999999999999


Q ss_pred             EeCCeE-eEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCcee-
Q 015368          134 FVAGVR-QFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVN-  210 (408)
Q Consensus       134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~-  210 (408)
                      |++|+. +.+|.|.++.+.|.+|+.+.+++++..+++.++++.++...+..+|+|+.+..+.....|.++| .+...+. 
T Consensus        82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~  161 (462)
T TIGR01130        82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF  161 (462)
T ss_pred             EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence            999966 7899999999999999999999999999999999999999888999998876777888898888 5555555 


Q ss_pred             EEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcc--cccCCcC--CHHHHHHHHhcCCCCceEeeccccccccccCCccE
Q 015368          211 FYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKA--TPFRHQF--TRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQ  286 (408)
Q Consensus       211 f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~--~~y~g~~--~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~  286 (408)
                      |+.+.+..+...++..    .+.+++++..+...  ..|.|+.  +.++|.+||..+++|++.+++..++..++..+ |.
T Consensus       162 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~  236 (462)
T TIGR01130       162 FAHSSDVAAFAKLGAF----PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PL  236 (462)
T ss_pred             EEecCCHHHHhhcCCC----CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-Cc
Confidence            5556677788888876    37777776544333  4677765  55899999999999999999999999999877 66


Q ss_pred             EEEEeeCCC----chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCC-ccccCC
Q 015368          287 LWLFAPAYG----SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA-KKYVLN  360 (408)
Q Consensus       287 ~i~f~~~~~----~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~-~~y~~~  360 (408)
                      +++|.....    ++++.+.++++|+++++ .   +.|+++|+...   .++++.+|++....|.+++++.++ .+|.+.
T Consensus       237 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---i~f~~~d~~~~---~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~  310 (462)
T TIGR01130       237 VVLYYNVDESLDPFEELRNRFLEAAKKFRGKF---VNFAVADEEDF---GRELEYFGLKAEKFPAVAIQDLEGNKKYPMD  310 (462)
T ss_pred             eeEEEEecCCchHHHHHHHHHHHHHHHCCCCe---EEEEEecHHHh---HHHHHHcCCCccCCceEEEEeCCcccccCCC
Confidence            666655432    37888999999999997 7   99999998753   478899999877789999998854 788887


Q ss_pred             C-CCChHHHHHHHHHHhcCcc--ccccccCchh----hhcCccCCccceeeec
Q 015368          361 G-ELTLSSIKSFGEEFLEDKL--LNQSDQISET----ILKLPSQSRASYQLRT  406 (408)
Q Consensus       361 ~-~~~~~~i~~Fi~~~~~gk~--~~kse~iP~~----~~~~~~~~~~~~~~~~  406 (408)
                      + .++.++|.+|++++++|++  +++||++|++    +.+++++||++.+++.
T Consensus       311 ~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~  363 (462)
T TIGR01130       311 QEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDE  363 (462)
T ss_pred             cCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccC
Confidence            7 8999999999999999999  8999999983    7889999999887653

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=100.00  E-value=6e-39  Score=270.36  Aligned_cols=311  Identities=21%  Similarity=0.310  Sum_probs=259.6

Q ss_pred             cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-----CcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-----EADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-----~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      ++..|++.++..++.++|.|||+||+.++.++|.|+++|..++.     ++.++.|||+.+..++.+|.|..|||+.+|+
T Consensus         1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr   80 (375)
T KOG0912|consen    1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR   80 (375)
T ss_pred             CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence            35678888998899999999999999999999999999988765     8999999999999999999999999999999


Q ss_pred             CCeEeE-EeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEE
Q 015368          136 AGVRQF-QFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQ  213 (408)
Q Consensus       136 ~g~~~~-~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~  213 (408)
                      +|.... .|.|.++.+.+.+||++.+..++.++.+.++++.....++..+|++|...+++.+..+..+| -++.++.|..
T Consensus        81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V  160 (375)
T KOG0912|consen   81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLV  160 (375)
T ss_pred             ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEe
Confidence            996654 79999999999999999999999999999999999888888999999988999999999987 6788999887


Q ss_pred             ecCHhHHhhcCCCCCCCCCeEEEeecCCCc-ccccCCcCCH-HHHHHHHhcCCCCceEeeccccccccccCCccEEEEEe
Q 015368          214 TTSADVAEFFHIHPKSKRPALIFLHLEAGK-ATPFRHQFTR-LAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFA  291 (408)
Q Consensus       214 ~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~-~~~y~g~~~~-~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i~f~  291 (408)
                      .....+. ...-.   +.+ +++++.+... ...|.|+++. +.+.+||.+.+.|+|+++|.+|..++.+.+.|.+|+|.
T Consensus       161 ~~gD~~~-~~~~~---~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~  235 (375)
T KOG0912|consen  161 GFGDLLK-PHEPP---GKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFR  235 (375)
T ss_pred             ecccccc-CCCCC---CCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEe
Confidence            6533211 11111   223 5556654322 2379999765 99999999999999999999999999999999999999


Q ss_pred             eCCCchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccC---CCCCChHHH
Q 015368          292 PAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVL---NGELTLSSI  368 (408)
Q Consensus       292 ~~~~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~---~~~~~~~~i  368 (408)
                      .+++......--..+++++.+..+.++|...|+...  . .-+.++|-+++++|+++|... .++|.+   ++...+..|
T Consensus       236 ~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f--~-hpL~HlgKs~~DLPviaIDsF-~Hmylfp~f~di~~pGkL  311 (375)
T KOG0912|consen  236 KKDDKESEKIFKNAIARELDDETLAINFLTADGKVF--K-HPLRHLGKSPDDLPVIAIDSF-RHMYLFPDFNDINIPGKL  311 (375)
T ss_pred             cCCcccHHHHHHHHHHHHhhhhhhccceeecCccee--c-chHHHhCCCcccCcEEEeecc-ceeeecCchhhhcCccHH
Confidence            988844443334467888765434488999997654  3 445899999999999999886 677765   346678899


Q ss_pred             HHHHHHHhcCcc
Q 015368          369 KSFGEEFLEDKL  380 (408)
Q Consensus       369 ~~Fi~~~~~gk~  380 (408)
                      .+|+.|+.+|++
T Consensus       312 kqFv~DL~sgkl  323 (375)
T KOG0912|consen  312 KQFVADLHSGKL  323 (375)
T ss_pred             HHHHHHHhCchh
Confidence            999999999999

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=100.00  E-value=4.5e-34  Score=240.53  Aligned_cols=292  Identities=18%  Similarity=0.205  Sum_probs=222.8

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERT  148 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~  148 (408)
                      ....|+|.||||||.||+++.|.|+++.-++++   .+.++++||+..+.++.+|||+||||+.++++| ....|.|+++
T Consensus        42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd-~a~dYRG~R~  120 (468)
T KOG4277|consen   42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD-HAIDYRGGRE  120 (468)
T ss_pred             cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC-eeeecCCCcc
Confidence            456899999999999999999999999988877   799999999999999999999999999999988 8899999999


Q ss_pred             HHHHHHHHHhHhCCCcccccC-hhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHhc-cCCceeEEEecCHhHHhh-cCC
Q 015368          149 RDVISAWVREKMTLGTYSITT-TDEAERILTVESKLVLGFLHDLEGMESEELAAASK-LHSDVNFYQTTSADVAEF-FHI  225 (408)
Q Consensus       149 ~~~l~~~i~~~~~~~~~~i~~-~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a~-~~~~~~f~~~~~~~l~~~-~~i  225 (408)
                      .+.|.+|..+..++-+..|++ .-++.++...+.+.++ |+....++....|..+|. ......|+.. +++++.. ...
T Consensus       121 Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffV-f~Gtge~PL~d~fidAASe~~~~a~FfSa-seeVaPe~~~~  198 (468)
T KOG4277|consen  121 KDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFV-FFGTGEGPLFDAFIDAASEKFSVARFFSA-SEEVAPEENDA  198 (468)
T ss_pred             HHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEE-EEeCCCCcHHHHHHHHhhhheeeeeeecc-ccccCCcccch
Confidence            999999999999888888865 3334444455555554 777778999999999884 4333444443 3344433 334


Q ss_pred             CCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeeccccccccccCCccEEEEEeeC-------CCchH
Q 015368          226 HPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPA-------YGSDK  298 (408)
Q Consensus       226 ~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i~f~~~-------~~~~~  298 (408)
                      +.   .|++.+|+.+  .+..|. +.+.+++.+||+..++|-+-..+..++.++-.+++.+++...+.       ....+
T Consensus       199 ke---mpaV~VFKDe--tf~i~d-e~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~  272 (468)
T KOG4277|consen  199 KE---MPAVAVFKDE--TFEIED-EGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHRE  272 (468)
T ss_pred             hh---ccceEEEccc--eeEEEe-cCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHH
Confidence            43   6999999865  333332 34578999999999999999999999888888887444433332       22567


Q ss_pred             HHHHHHHHHHHhcCCc---ceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCC----CCChHHHHHH
Q 015368          299 VILTFEEVAKALKGKV---NMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNG----ELTLSSIKSF  371 (408)
Q Consensus       299 ~~~~~~~vA~~~~~~~---~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~----~~~~~~i~~F  371 (408)
                      +....+++|+++++.|   +++.|+|+|+++.      .+.+-.+.-..|.+++++..+..|.+..    ..+.+.|.+|
T Consensus       273 ~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~------~nqilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqF  346 (468)
T KOG4277|consen  273 FHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDL------ANQILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQF  346 (468)
T ss_pred             HHHHHHHHHHHHHhChhhhhhceeeccchhHH------HHHHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHH
Confidence            8888889999888643   4589999997643      2333334444689999998777776632    5778899999


Q ss_pred             HHHHhcC
Q 015368          372 GEEFLED  378 (408)
Q Consensus       372 i~~~~~g  378 (408)
                      |++-..|
T Consensus       347 ientseg  353 (468)
T KOG4277|consen  347 IENTSEG  353 (468)
T ss_pred             Hhccccc
Confidence            9994444

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=100.00  E-value=4.7e-30  Score=221.52  Aligned_cols=321  Identities=17%  Similarity=0.223  Sum_probs=238.9

Q ss_pred             ccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHh-----hhH-HHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCC
Q 015368           53 LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK-----LAP-EFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNI  125 (408)
Q Consensus        53 ~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~-----~~p-~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i  125 (408)
                      .....+++|+.+||.+++++.+.++|+||.|--..--.     +.. .++-.|+.+.. +|.|+.||..++..+++++|+
T Consensus        31 DGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv  110 (383)
T PF01216_consen   31 DGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGV  110 (383)
T ss_dssp             SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT-
T ss_pred             CCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCc
Confidence            34578999999999999999999999999886432111     112 23444555544 999999999999999999999


Q ss_pred             CcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhc-cCCeEEEEEecCCCCcCHHHHHHHh-
Q 015368          126 LAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-  203 (408)
Q Consensus       126 ~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~~~~~~~a-  203 (408)
                      ...+++++|++| .+..|.|.++++.+..||...+..++..|++..+++.|-+ ...+-+|+||.+..+..++.|..+| 
T Consensus       111 ~E~~SiyVfkd~-~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe  189 (383)
T PF01216_consen  111 EEEGSIYVFKDG-EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAE  189 (383)
T ss_dssp             -STTEEEEEETT-EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHH
T ss_pred             cccCcEEEEECC-cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHH
Confidence            999999999999 7788999999999999999999999999999999998887 4478999999998888999999999 


Q ss_pred             ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCc-CCHHHHHHHHhcCCCCceEeeccccccccccC
Q 015368          204 KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKHPLVVTLTIHNAQFVFQD  282 (408)
Q Consensus       204 ~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~  282 (408)
                      .+.+.+.|+.+.+..++++++++    ...+-+|++.-..++...|+ .+.+++.+||+.|+.|.++.|+.+++......
T Consensus       190 ~F~p~IkFfAtfd~~vAk~L~lK----~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wed  265 (383)
T PF01216_consen  190 HFQPYIKFFATFDKKVAKKLGLK----LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWED  265 (383)
T ss_dssp             HCTTTSEEEEE-SHHHHHHHT-S----TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHS
T ss_pred             hhcCceeEEEEecchhhhhcCcc----ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcc
Confidence            79999999999999999999997    58899999988888888876 67799999999999999999999998887776


Q ss_pred             Cc--cEEEEEeeCCC--chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc-ccccchhhhccCCCCCCcEEEEEcc---CC
Q 015368          283 PR--KQLWLFAPAYG--SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE-GVGRRVSQEFGVSGNAPRVIAYSAR---DA  354 (408)
Q Consensus       283 ~~--~~~i~f~~~~~--~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~-~~~~~l~~~~~i~~~~~p~i~i~~~---~~  354 (408)
                      ..  .+++.|+..++  -.+++..++++|++...+ +++.++|+|-++. -.....-+.|||+-. .|.|.+.+.   .+
T Consensus       266 d~~g~hIvaFaee~dpdG~efleilk~va~~nt~n-p~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIGvVnvtdads  343 (383)
T PF01216_consen  266 DIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDN-PDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIGVVNVTDADS  343 (383)
T ss_dssp             SSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT--TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEEEEETTTSEE
T ss_pred             cCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcC-CceeEEEECCCCCchhHHHHHhhcCcccc-CCceeEEecccccc
Confidence            55  67778887766  568899999999999865 3599999998876 223455689999876 588888887   34


Q ss_pred             ccccCCC---CCChHHHHHHHHHHhcCcc
Q 015368          355 KKYVLNG---ELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       355 ~~y~~~~---~~~~~~i~~Fi~~~~~gk~  380 (408)
                      .++.|++   ..+.+.++.||+++++|++
T Consensus       344 vW~dm~d~~d~pt~~~LedWieDVlsg~i  372 (383)
T PF01216_consen  344 VWMDMDDDDDLPTAEELEDWIEDVLSGKI  372 (383)
T ss_dssp             EEC-STTTSS---HHHHHHHHHHHHCTCC
T ss_pred             chhccCCcccCCcHHHHHHHHHHHhcCCC
Confidence            5666654   4678999999999999987

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.92  E-value=1.7e-24  Score=164.94  Aligned_cols=102  Identities=17%  Similarity=0.311  Sum_probs=95.2

Q ss_pred             CCCcEEcChhhHHHH---HcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH-HHcCCCcCcE
Q 015368           55 AKDVVSLNGKNFSEF---MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA-KEYNILAYPT  130 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~---~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~-~~~~i~~~Pt  130 (408)
                      .+.+.+|++.+|++.   +.++++++|.||||||++|+.++|.++++++.+++.+.|++|||+++.++| ++|+|.++||
T Consensus         8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT   87 (113)
T cd03006           8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV   87 (113)
T ss_pred             CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence            357899999999986   578899999999999999999999999999999888999999999999999 5899999999


Q ss_pred             EEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368          131 LYLFVAGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~~~~~~l~~~i  156 (408)
                      +.+|++|+...+|.|.++.+.|..|+
T Consensus        88 l~lf~~g~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          88 IHLYYRSRGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             EEEEECCccceEEeCCCCHHHHHhhC
Confidence            99999998889999999999998874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.91  E-value=1e-23  Score=159.93  Aligned_cols=99  Identities=23%  Similarity=0.524  Sum_probs=94.3

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~  136 (408)
                      .++.|+.++|+..+.++++++|.|||+||++|+++.|.|+++++.+++.+.|+.|||++++.+|++++|+++||+++|++
T Consensus         2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~   81 (101)
T cd03003           2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYVFPS   81 (101)
T ss_pred             CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEEEcC
Confidence            57789999999999888999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             CeEeEEeeCCCCHHHHHHH
Q 015368          137 GVRQFQFFGERTRDVISAW  155 (408)
Q Consensus       137 g~~~~~~~g~~~~~~l~~~  155 (408)
                      |+.+.+|.|.++.+.|.+|
T Consensus        82 g~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          82 GMNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             CCCcccCCCCCCHHHHHhh
Confidence            9888999999999999877

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=2e-23  Score=161.09  Aligned_cols=106  Identities=24%  Similarity=0.395  Sum_probs=98.8

Q ss_pred             CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      ..+..++..+|++.+ +++.||+|+|||+||+||+.+.|.+++++.+|.+.+.++.||.|++.+++.+|+|..+||+++|
T Consensus        43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf  122 (150)
T KOG0910|consen   43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF  122 (150)
T ss_pred             ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence            355678889998555 8889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      +||+...++.|..+.+.+..||++.+.
T Consensus       123 knGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  123 KNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            999999999999999999999998763

>PRK10996 thioredoxin 2; Provisional

Probab=99.90  E-value=2e-22  Score=161.03  Aligned_cols=133  Identities=22%  Similarity=0.416  Sum_probs=120.2

Q ss_pred             CccccccChhhhhhhccCCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcE
Q 015368           28 SHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD  107 (408)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~  107 (408)
                      +|+..++.+.......++|+..........+.+++..+|+..+.++++++|+|||+||++|+.+.|.+.++++++.+++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~   86 (139)
T PRK10996          7 SCQAINRLPDERIEDAAKCGRCGHDLFDGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVR   86 (139)
T ss_pred             CCCCcCCCCCccccCCCcCCCCCCccCCCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeE
Confidence            45566777777777788888866666667788899999999998899999999999999999999999999999988999


Q ss_pred             EEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          108 LVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       108 ~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++.||++++++++++|+|.++|++++|++|+.+.++.|..+.+.|.+|+++.+
T Consensus        87 ~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996         87 FVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             EEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999998753

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.89  E-value=3.9e-22  Score=152.14  Aligned_cols=102  Identities=28%  Similarity=0.566  Sum_probs=97.3

Q ss_pred             cEEcChhhHHHHHcC-CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368           58 VVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~  136 (408)
                      |..+|+++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+++++.|+.|||++++++|++|+|.++||+++|++
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   80 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKN   80 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEET
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEEC
Confidence            467899999999976 8999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             CeEeEEeeCCCCHHHHHHHHHhH
Q 015368          137 GVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       137 g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                      |+...+|.|.++.+.|.+||+++
T Consensus        81 g~~~~~~~g~~~~~~l~~~i~~~  103 (103)
T PF00085_consen   81 GKEVKRYNGPRNAESLIEFIEKH  103 (103)
T ss_dssp             TEEEEEEESSSSHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHHHHHHHHHcC
Confidence            99999999999999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.89  E-value=1.5e-22  Score=154.50  Aligned_cols=100  Identities=31%  Similarity=0.544  Sum_probs=92.4

Q ss_pred             CcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      .+..++.++|++.+ .++++++|.|||+||++|+.+.|.|+++++++++.+.++.|||++++++|++++|+++||+++|+
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~   81 (104)
T cd03004           2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLYP   81 (104)
T ss_pred             cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEEc
Confidence            46789999999876 56779999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CC-eEeEEeeCCCC-HHHHHHHH
Q 015368          136 AG-VRQFQFFGERT-RDVISAWV  156 (408)
Q Consensus       136 ~g-~~~~~~~g~~~-~~~l~~~i  156 (408)
                      +| +.+.+|.|..+ .++|.+||
T Consensus        82 ~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          82 GNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             CCCCCceEccCCCCCHHHHHhhC
Confidence            77 88899999987 99998885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.89  E-value=3.3e-22  Score=153.18  Aligned_cols=106  Identities=15%  Similarity=0.178  Sum_probs=95.1

Q ss_pred             cCCCcEEcChhhHHHHHc-CCCcEEEEEecCCChh--HH--hhhHHHHHHHHHh--cCCcEEEEEeCcccHhHHHHcCCC
Q 015368           54 YAKDVVSLNGKNFSEFMG-KNRNVMVMFYANWCYW--SK--KLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNIL  126 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~--C~--~~~p~~~~~~~~~--~~~v~~~~v~~~~~~~~~~~~~i~  126 (408)
                      ....+..||+++|++.+. ++.++++.|||+||++  |+  .+.|.+.+++.++  .+++.|++||+++++++|++|||+
T Consensus         7 ~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~   86 (120)
T cd03065           7 GKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLD   86 (120)
T ss_pred             CCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCc
Confidence            446888999999998774 4568999999999976  99  8889999999888  669999999999999999999999


Q ss_pred             cCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          127 AYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       127 ~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++||+++|++|+.+. |.|.++.+.|.+||.+.+
T Consensus        87 ~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          87 EEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             cccEEEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence            999999999998665 999999999999998764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.88  E-value=2.5e-22  Score=154.17  Aligned_cols=100  Identities=35%  Similarity=0.621  Sum_probs=92.1

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC------CcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG------EADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~------~v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      .+..+++++|++.+.++++++|.|||+||++|+++.|.|+++++.+++      .+.++.|||++++++|++|+|+++||
T Consensus         2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt   81 (108)
T cd02996           2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT   81 (108)
T ss_pred             ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence            577899999999998889999999999999999999999999988642      48999999999999999999999999


Q ss_pred             EEEEeCCe-EeEEeeCCCCHHHHHHHH
Q 015368          131 LYLFVAGV-RQFQFFGERTRDVISAWV  156 (408)
Q Consensus       131 ~~~~~~g~-~~~~~~g~~~~~~l~~~i  156 (408)
                      +++|++|+ ....|.|.++.++|.+||
T Consensus        82 l~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          82 LKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            99999997 458899999999999885

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.87  E-value=2.4e-21  Score=165.14  Aligned_cols=106  Identities=34%  Similarity=0.546  Sum_probs=97.8

Q ss_pred             CCcEEcChhhHHHHHcC-----CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           56 KDVVSLNGKNFSEFMGK-----NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~-----~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      ..+.++++++|++.+..     +++++|+|||+||++|+++.|.|+++++++++.+.++.|||+++++++++|+|+++||
T Consensus        30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT  109 (224)
T PTZ00443         30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT  109 (224)
T ss_pred             CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence            57899999999987742     4799999999999999999999999999999889999999999999999999999999


Q ss_pred             EEEEeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          131 LYLFVAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      +++|++|+....+.|.++.+++.+|+.+...
T Consensus       110 l~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        110 LLLFDKGKMYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             EEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence            9999999777777889999999999988863

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.87  E-value=1.2e-21  Score=148.54  Aligned_cols=99  Identities=27%  Similarity=0.503  Sum_probs=90.4

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      .+.+++.++|++.+. ++ ++|+|||+||++|+++.|.|+++++.+++ ++.++.|||++++.++++|+|.++||+++++
T Consensus         2 ~v~~l~~~~f~~~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~   79 (101)
T cd02994           2 NVVELTDSNWTLVLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYHAK   79 (101)
T ss_pred             ceEEcChhhHHHHhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEEeC
Confidence            578899999998874 33 78999999999999999999999998866 7999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHh
Q 015368          136 AGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                      +|+ +.+|.|.++.++|.+|+++
T Consensus        80 ~g~-~~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          80 DGV-FRRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             CCC-EEEecCCCCHHHHHHHHhC
Confidence            996 5889999999999999864

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=8.5e-22  Score=168.62  Aligned_cols=107  Identities=23%  Similarity=0.423  Sum_probs=100.8

Q ss_pred             CCcEEcChhhHHHHH---cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      ..+.++|..||...+   ...+||+|+||||||++|+++.|.+++++.+|++++.+++||||+++.++.+|||+++||++
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~  102 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVY  102 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEE
Confidence            359999999999766   33469999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      +|.+|+.+.-|.|....+.+.+|+.+.++.
T Consensus       103 af~dGqpVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118         103 AFKDGQPVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             EeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence            999999999999999999999999999876

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.87  E-value=2.1e-21  Score=164.59  Aligned_cols=177  Identities=25%  Similarity=0.398  Sum_probs=151.4

Q ss_pred             ecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCc-CCHHHHHHHHhcCCC
Q 015368          188 LHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKH  265 (408)
Q Consensus       188 ~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~  265 (408)
                      |.+.++...+.|..+| .+.+++.|+.+.+.++++.++++    .|++++|+..++.+..|.|. ++.++|.+||..+++
T Consensus         1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~----~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~   76 (184)
T PF13848_consen    1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIK----EPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF   76 (184)
T ss_dssp             ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCS----SSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred             CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCC----CCcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence            3455677888999988 78889999999999999999998    39999999987788999998 899999999999999


Q ss_pred             CceEeeccccccccccCCcc-EEEEEeeCCC--chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          266 PLVVTLTIHNAQFVFQDPRK-QLWLFAPAYG--SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       266 p~v~~lt~~~~~~~~~~~~~-~~i~f~~~~~--~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      |++.++|.+++..++..+.+ ++++|.+.+.  .+.+...++++|++++++   +.|+|+|++..   +++++.+|+++.
T Consensus        77 P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~---~~~~~~~~i~~~  150 (184)
T PF13848_consen   77 PLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDF---PRLLKYFGIDED  150 (184)
T ss_dssp             TSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTT---HHHHHHTTTTTS
T ss_pred             ccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHh---HHHHHHcCCCCc
Confidence            99999999999999999986 6666765433  678888899999999999   99999998843   467899999988


Q ss_pred             CCcEEEEEcc-CCcc-ccCCCCCChHHHHHHHHH
Q 015368          343 APRVIAYSAR-DAKK-YVLNGELTLSSIKSFGEE  374 (408)
Q Consensus       343 ~~p~i~i~~~-~~~~-y~~~~~~~~~~i~~Fi~~  374 (408)
                      ..|.+++.+. ++++ |.++++++.++|.+|+++
T Consensus       151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence            8999999996 4443 346889999999999986

...

>PHA02278 thioredoxin-like protein

Probab=99.87  E-value=2.9e-21  Score=144.76  Aligned_cols=93  Identities=13%  Similarity=0.151  Sum_probs=85.1

Q ss_pred             hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc----HhHHHHcCCCcCcEEEEEeCCe
Q 015368           63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        63 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      .++|++.+.++++++|+|||+||+||+.+.|.++++++++..++.|+.||++.+    ++++++|+|.++||+++|++|+
T Consensus         4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~   83 (103)
T PHA02278          4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ   83 (103)
T ss_pred             HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE
Confidence            567888888899999999999999999999999999988665788999999986    6899999999999999999999


Q ss_pred             EeEEeeCCCCHHHHHHH
Q 015368          139 RQFQFFGERTRDVISAW  155 (408)
Q Consensus       139 ~~~~~~g~~~~~~l~~~  155 (408)
                      .+.++.|..+.+.+.+|
T Consensus        84 ~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         84 LVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             EEEEEeCCCCHHHHHhh
Confidence            99999999999888775

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.86  E-value=3e-21  Score=146.84  Aligned_cols=98  Identities=32%  Similarity=0.619  Sum_probs=91.1

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +..+++++|+..+.++ +++|+|||+||++|+.+.|.++++++++++   ++.++.|||+++..+|++|+|.++||+++|
T Consensus         2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   80 (102)
T cd03005           2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLF   80 (102)
T ss_pred             eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEE
Confidence            5688999999988665 599999999999999999999999999976   799999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHH
Q 015368          135 VAGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i  156 (408)
                      ++|+.+.+|.|..+.++|.+||
T Consensus        81 ~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          81 KDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             eCCCeeeEeeCCCCHHHHHhhC
Confidence            9998888999999999998875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.86  E-value=3.4e-21  Score=148.07  Aligned_cols=100  Identities=17%  Similarity=0.331  Sum_probs=91.0

Q ss_pred             EEcChhhHHHHH---cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           59 VSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        59 ~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      ..++.++|++.+   ..+++++|+||||||++|+.+.|.++++++++++ ++.++.|||++++.++++++|.++||+++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~   86 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGI   86 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence            356778887544   3679999999999999999999999999999976 699999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHh
Q 015368          135 VAGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                      ++|+.+.++.|..+.+.|.+||++
T Consensus        87 ~~g~~~~~~~G~~~~~~l~~~i~~  110 (111)
T cd02963          87 INGQVTFYHDSSFTKQHVVDFVRK  110 (111)
T ss_pred             ECCEEEEEecCCCCHHHHHHHHhc
Confidence            999888889999999999999975

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.86  E-value=9.4e-21  Score=145.77  Aligned_cols=106  Identities=21%  Similarity=0.406  Sum_probs=98.2

Q ss_pred             CCCcEEcChhhHHHH-HcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           55 AKDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      ++.+..+++++|++. +..+++++|+||++||++|+.+.|.++++++.+.+++.++.||++.++.++++|++.++||+++
T Consensus         2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   81 (109)
T PRK09381          2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL   81 (109)
T ss_pred             CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence            357888999999864 5668899999999999999999999999999998899999999999999999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      |++|+...++.|..+.+.|..+|.+.+
T Consensus        82 ~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         82 FKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             EeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            999988889999999999999998765

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.86  E-value=2.5e-21  Score=145.67  Aligned_cols=90  Identities=19%  Similarity=0.234  Sum_probs=80.9

Q ss_pred             hhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368           63 GKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ  140 (408)
Q Consensus        63 ~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~  140 (408)
                      .++|+..+.  .+++++|.|||+||+||+.+.|.++++++++.+.+.|+.||++++++++++|+|.++||+++|++|+.+
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v   81 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHM   81 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEE
Confidence            456777774  578999999999999999999999999999988889999999999999999999999999999999999


Q ss_pred             EEeeCCCCHHHH
Q 015368          141 FQFFGERTRDVI  152 (408)
Q Consensus       141 ~~~~g~~~~~~l  152 (408)
                      .+..|..+...|
T Consensus        82 ~~~~G~~~~~~~   93 (114)
T cd02954          82 KIDLGTGNNNKI   93 (114)
T ss_pred             EEEcCCCCCceE
Confidence            988886655443

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.4e-20  Score=175.36  Aligned_cols=276  Identities=21%  Similarity=0.311  Sum_probs=194.0

Q ss_pred             HHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeC
Q 015368           66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG  145 (408)
Q Consensus        66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g  145 (408)
                      +......+++++|.||||||+||+++.|+|.++++.+++.+.++.|||+++.++|++|+|+++||+.+|..|..+..|.|
T Consensus        40 ~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~  119 (383)
T KOG0191|consen   40 FDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSG  119 (383)
T ss_pred             HHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccC
Confidence            33455778899999999999999999999999999999999999999999999999999999999999998867889999


Q ss_pred             CCCHHHHHHHHHhHhCCCccccc-------ChhHHHHHh-ccCCeEEEEEecCCCCc---CHHHHHHHhc-c--CCceeE
Q 015368          146 ERTRDVISAWVREKMTLGTYSIT-------TTDEAERIL-TVESKLVLGFLHDLEGM---ESEELAAASK-L--HSDVNF  211 (408)
Q Consensus       146 ~~~~~~l~~~i~~~~~~~~~~i~-------~~~~~~~~~-~~~~~~vi~f~~~~~~~---~~~~~~~~a~-~--~~~~~f  211 (408)
                      ..+.+.+..|+...+.+.+....       +...+.... +.+..+++.|+.+||..   ..+.+..++. +  ...+.+
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~  199 (383)
T KOG0191|consen  120 PRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVEL  199 (383)
T ss_pred             cccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEE
Confidence            99999999999998865543332       223344333 45678999999999985   3455666663 3  356666


Q ss_pred             EEec---CHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCc-----eEeecccc-ccccccC
Q 015368          212 YQTT---SADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPL-----VVTLTIHN-AQFVFQD  282 (408)
Q Consensus       212 ~~~~---~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~-----v~~lt~~~-~~~~~~~  282 (408)
                      +...   ...++..+++.   ++|++.+|+.++.....|.|.++.+.+.+|++....+.     +.+..... ....+..
T Consensus       200 ~~~d~~~~~~~~~~~~v~---~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d  276 (383)
T KOG0191|consen  200 GKIDATVHKSLASRLEVR---GYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLD  276 (383)
T ss_pred             EeeccchHHHHhhhhccc---CCceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhh
Confidence            6553   67889999999   59999999987643567778899999999999866552     23322221 1111111


Q ss_pred             ---------C--ccEEEEEeeCCC-chHHHHHHHHHHHH---hcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEE
Q 015368          283 ---------P--RKQLWLFAPAYG-SDKVILTFEEVAKA---LKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVI  347 (408)
Q Consensus       283 ---------~--~~~~i~f~~~~~-~~~~~~~~~~vA~~---~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i  347 (408)
                               .  ...+-++..+.. +......+...|..   ...+   +.+..+++....   .++.....  ...|.+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~k~~~~~~~---~~~~~~~~--~~~~~~  348 (383)
T KOG0191|consen  277 TAEFLDSLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSK---IKAAKLDCALLK---SLCQKAIV--RGYPTI  348 (383)
T ss_pred             hhhhhhhhHHhhhhHhhhhcchhhcccccchhHHHHHhcccccccc---ceeecccccccc---chhhHhhh--hcCcee
Confidence                     0  012223334433 34445556666666   3344   778888876543   24433333  224555


Q ss_pred             EEEcc
Q 015368          348 AYSAR  352 (408)
Q Consensus       348 ~i~~~  352 (408)
                      .+.+.
T Consensus       349 ~~~~~  353 (383)
T KOG0191|consen  349 KLYNY  353 (383)
T ss_pred             Eeecc
Confidence            55543

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.85  E-value=6.1e-21  Score=147.00  Aligned_cols=99  Identities=36%  Similarity=0.589  Sum_probs=91.0

Q ss_pred             cEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc--cHhHHHHcCCCcCcEEEEE
Q 015368           58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        58 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +..+++++|+..+ ..+++++|.|||+||++|+++.|.++++++.+++.+.++.|||++  ++++|++|+|+++||+++|
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~   81 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF   81 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence            5689999999877 557789999999999999999999999999998889999999999  8899999999999999999


Q ss_pred             eCCe-----EeEEeeCCCCHHHHHHHH
Q 015368          135 VAGV-----RQFQFFGERTRDVISAWV  156 (408)
Q Consensus       135 ~~g~-----~~~~~~g~~~~~~l~~~i  156 (408)
                      ++|+     ....|.|.++.+.|.+||
T Consensus        82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          82 RPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             eCCCcccccccccccCccCHHHHHHHh
Confidence            9774     467899999999999997

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.85  E-value=1.1e-20  Score=141.83  Aligned_cols=93  Identities=27%  Similarity=0.409  Sum_probs=85.4

Q ss_pred             hHHHHH-cC-CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEE
Q 015368           65 NFSEFM-GK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQ  142 (408)
Q Consensus        65 ~~~~~~-~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~  142 (408)
                      +|++.+ .. +++++|+|||+||++|+.+.|.+.++++.+.+.+.++.||++++++++++|+|.++|++++|++|+.+.+
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~   81 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDG   81 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeee
Confidence            466555 33 6799999999999999999999999999998889999999999999999999999999999999988889


Q ss_pred             eeCCCCHHHHHHHHH
Q 015368          143 FFGERTRDVISAWVR  157 (408)
Q Consensus       143 ~~g~~~~~~l~~~i~  157 (408)
                      +.|..+.+.|..||+
T Consensus        82 ~~g~~~~~~l~~~l~   96 (96)
T cd02956          82 FQGAQPEEQLRQMLD   96 (96)
T ss_pred             ecCCCCHHHHHHHhC
Confidence            999999999999873

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.85  E-value=1.2e-19  Score=156.55  Aligned_cols=182  Identities=12%  Similarity=0.173  Sum_probs=137.8

Q ss_pred             CCcEEEEEec---CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe-EEeeCCC
Q 015368           73 NRNVMVMFYA---NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ-FQFFGER  147 (408)
Q Consensus        73 ~~~~~v~f~a---~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~-~~~~g~~  147 (408)
                      +...++.|++   +||++|+.+.|.++++++.+.+ .+.++.+|.+++++++++|+|.++||+++|++|+.. .++.|..
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~   98 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIP   98 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecC
Confidence            3455667888   9999999999999999999864 466777777799999999999999999999999876 5899999


Q ss_pred             CHHHHHHHHHhHhC--CCcccccChhHHHHHhccC-CeEEEEEecCCCCcCHHH---HHHHhccCCceeEEEe---cCHh
Q 015368          148 TRDVISAWVREKMT--LGTYSITTTDEAERILTVE-SKLVLGFLHDLEGMESEE---LAAASKLHSDVNFYQT---TSAD  218 (408)
Q Consensus       148 ~~~~l~~~i~~~~~--~~~~~i~~~~~~~~~~~~~-~~~vi~f~~~~~~~~~~~---~~~~a~~~~~~~f~~~---~~~~  218 (408)
                      +.+++.+||+..+.  .....+ +.+..+.+.... +..++.|+++||.++...   +..++...+++.+..+   .+++
T Consensus        99 ~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~  177 (215)
T TIGR02187        99 AGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD  177 (215)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH
Confidence            99999999988853  222233 434444444433 445555899999986543   3444433456666543   6778


Q ss_pred             HHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          219 VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       219 l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      +++++++.   +.|++++++.+  .  .+.|....+++.+|+..
T Consensus       178 ~~~~~~V~---~vPtl~i~~~~--~--~~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       178 LAEKYGVM---SVPKIVINKGV--E--EFVGAYPEEQFLEYILS  214 (215)
T ss_pred             HHHHhCCc---cCCEEEEecCC--E--EEECCCCHHHHHHHHHh
Confidence            99999998   59999988643  2  27788888999999864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.85  E-value=7.7e-21  Score=142.83  Aligned_cols=84  Identities=26%  Similarity=0.626  Sum_probs=79.2

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-ccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR  149 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~  149 (408)
                      .++++++|+|||+||++|+.++|.|+++++.++ ++.++.||++ ++++++++|+|.++||+++|++| .+.+|.|.++.
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~   93 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFP-QIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTL   93 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-cCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCH
Confidence            578999999999999999999999999999997 5889999999 88999999999999999999999 88999999999


Q ss_pred             HHHHHHH
Q 015368          150 DVISAWV  156 (408)
Q Consensus       150 ~~l~~~i  156 (408)
                      ++|.+|+
T Consensus        94 ~~l~~f~  100 (100)
T cd02999          94 DSLAAFY  100 (100)
T ss_pred             HHHHhhC
Confidence            9999885

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.85  E-value=2.8e-20  Score=141.02  Aligned_cols=94  Identities=17%  Similarity=0.223  Sum_probs=82.0

Q ss_pred             ChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH---hHHHHcCCCcCcEEEEEeC
Q 015368           62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK---DLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        62 ~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~---~~~~~~~i~~~Pt~~~~~~  136 (408)
                      +.++|++.+.  ++++++|+|||+||++|+.++|.++++++++ .++.|+.||++++.   +++++|+|.++||+++|++
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~   80 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD   80 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence            3567887774  3799999999999999999999999999999 58999999999874   8999999999999999999


Q ss_pred             CeEeEEeeCCCCHHHHHHHHH
Q 015368          137 GVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       137 g~~~~~~~g~~~~~~l~~~i~  157 (408)
                      |+.+.++.|. ..+.+.+.+.
T Consensus        81 G~~v~~~~G~-~~~~l~~~~~  100 (103)
T cd02985          81 GEKIHEEEGI-GPDELIGDVL  100 (103)
T ss_pred             CeEEEEEeCC-CHHHHHHHHH
Confidence            9999999995 4566666554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.84  E-value=2.3e-20  Score=142.56  Aligned_cols=99  Identities=40%  Similarity=0.694  Sum_probs=92.3

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCcc--cHhHHHHcCCCcCcEEEE
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL--EKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~  133 (408)
                      +..+++.+|+..+.++++++|+|||+||++|+++.|.+.++++.++  +.+.++.+||+.  ++.++++++|+++||+++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~   81 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKY   81 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEE
Confidence            5678899999999888999999999999999999999999999987  478999999998  899999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHH
Q 015368          134 FVAGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i  156 (408)
                      |++|+.+.++.|..+.+.+.+||
T Consensus        82 ~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          82 FENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             EeCCCeeEEeCCCCCHHHHHhhC
Confidence            99998889999999999998885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.84  E-value=3.7e-20  Score=140.16  Aligned_cols=96  Identities=19%  Similarity=0.272  Sum_probs=87.6

Q ss_pred             cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368           61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      -+.++|+..+.++++++|+|||+||++|+.+.|.+.++++.+++ .+.|+.+|++ +.+++++|+|+++||+++|++|+.
T Consensus         5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~   83 (102)
T cd02948           5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGEL   83 (102)
T ss_pred             cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEE
Confidence            36788999888899999999999999999999999999999986 5889999999 778999999999999999999988


Q ss_pred             eEEeeCCCCHHHHHHHHHh
Q 015368          140 QFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       140 ~~~~~g~~~~~~l~~~i~~  158 (408)
                      +.+..|. +.+.+.++|.+
T Consensus        84 ~~~~~G~-~~~~~~~~i~~  101 (102)
T cd02948          84 VAVIRGA-NAPLLNKTITE  101 (102)
T ss_pred             EEEEecC-ChHHHHHHHhh
Confidence            8899895 88889888864

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.84  E-value=3.9e-20  Score=140.96  Aligned_cols=99  Identities=37%  Similarity=0.593  Sum_probs=91.1

Q ss_pred             cEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368           58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        58 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~  136 (408)
                      +.++++.+|++.+ ..+++++|.||++||++|+++.|.|.++++.+.+.+.++.+||+++++++++|+|+++|++++|++
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~   81 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGA   81 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECC
Confidence            5688999999877 445669999999999999999999999999998899999999999999999999999999999998


Q ss_pred             C-eEeEEeeCCCCHHHHHHHH
Q 015368          137 G-VRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       137 g-~~~~~~~g~~~~~~l~~~i  156 (408)
                      | .....|.|.++.++|.+|+
T Consensus        82 ~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          82 GKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CCcceeecCCCCCHHHHHHHh
Confidence            8 5678899999999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.84  E-value=3.1e-20  Score=141.28  Aligned_cols=99  Identities=40%  Similarity=0.702  Sum_probs=92.4

Q ss_pred             cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368           61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      |++++|+..+.++++++|+||++||++|+.+.|.++++++.+++  ++.++.+||++++.++++|+|.++|++++|++|+
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~   80 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGK   80 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCCC
Confidence            56789998888899999999999999999999999999999987  6999999999999999999999999999999775


Q ss_pred             EeEEeeCCCCHHHHHHHHHhH
Q 015368          139 RQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       139 ~~~~~~g~~~~~~l~~~i~~~  159 (408)
                      .+.+|.|.++.+.|..||.++
T Consensus        81 ~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        81 KPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             cceeecCCCCHHHHHHHHHhc
Confidence            588999999999999999875

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.83  E-value=1.5e-19  Score=144.73  Aligned_cols=90  Identities=19%  Similarity=0.273  Sum_probs=83.0

Q ss_pred             CCcEEcChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCc-----
Q 015368           56 KDVVSLNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILA-----  127 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~-----  127 (408)
                      ..+..++.++|++.+.  .+++++|+|||+||++|+.+.|.++++++++++ ++.|+.||++++++++++|+|.+     
T Consensus        28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~  107 (152)
T cd02962          28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK  107 (152)
T ss_pred             CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence            5788899999998773  356899999999999999999999999999975 69999999999999999999988     


Q ss_pred             -CcEEEEEeCCeEeEEeeC
Q 015368          128 -YPTLYLFVAGVRQFQFFG  145 (408)
Q Consensus       128 -~Pt~~~~~~g~~~~~~~g  145 (408)
                       +||+++|++|+.+.++.|
T Consensus       108 ~~PT~ilf~~Gk~v~r~~G  126 (152)
T cd02962         108 QLPTIILFQGGKEVARRPY  126 (152)
T ss_pred             CCCEEEEEECCEEEEEEec
Confidence             999999999999999987

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.83  E-value=2.5e-20  Score=140.75  Aligned_cols=99  Identities=23%  Similarity=0.375  Sum_probs=87.2

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEec--CCCh---hHHhhhHHHHHHHHHhcCCcEEEEEeC-----cccHhHHHHcCCC
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYA--NWCY---WSKKLAPEFAAAAKMLKGEADLVMVDA-----YLEKDLAKEYNIL  126 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a--~wC~---~C~~~~p~~~~~~~~~~~~v~~~~v~~-----~~~~~~~~~~~i~  126 (408)
                      .++.|+..+|++.+.+++.+||.|||  |||+   +|++++|++.+.+.    .|.++.|||     .++.+||++|+|+
T Consensus         2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----~v~lakVd~~d~~~~~~~~L~~~y~I~   77 (116)
T cd03007           2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----DLLVAEVGIKDYGEKLNMELGERYKLD   77 (116)
T ss_pred             CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----ceEEEEEecccccchhhHHHHHHhCCC
Confidence            46789999999999999999999999  8888   77777777766654    389999999     4678899999999


Q ss_pred             --cCcEEEEEeCCe--EeEEeeCC-CCHHHHHHHHHhH
Q 015368          127 --AYPTLYLFVAGV--RQFQFFGE-RTRDVISAWVREK  159 (408)
Q Consensus       127 --~~Pt~~~~~~g~--~~~~~~g~-~~~~~l~~~i~~~  159 (408)
                        +|||+.+|++|.  ....|.|. ++.+.|.+||+++
T Consensus        78 ~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          78 KESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             cCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence              999999999884  56789997 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.83  E-value=6.8e-20  Score=140.58  Aligned_cols=100  Identities=23%  Similarity=0.517  Sum_probs=88.6

Q ss_pred             CcEEcChhhHHHHH---cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-cHhHHHH-cCCCcCcE
Q 015368           57 DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-EKDLAKE-YNILAYPT  130 (408)
Q Consensus        57 ~~~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-~~~~~~~-~~i~~~Pt  130 (408)
                      .+.+++.++|+..+   .++++++|.|||+||++|+++.|.|.++++.+++ ++.++.|||+. +..+|++ ++++++||
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt   81 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT   81 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence            57789999999777   3578999999999999999999999999999987 69999999998 5788874 99999999


Q ss_pred             EEEEeCC-eEeEEeeCC-CCHHHHHHHH
Q 015368          131 LYLFVAG-VRQFQFFGE-RTRDVISAWV  156 (408)
Q Consensus       131 ~~~~~~g-~~~~~~~g~-~~~~~l~~~i  156 (408)
                      +++|++| .....|.|. ++.+.|..||
T Consensus        82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            9999854 567889995 8999998885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.83  E-value=9.3e-20  Score=136.08  Aligned_cols=97  Identities=15%  Similarity=0.196  Sum_probs=91.4

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCC--ChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANW--CYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~w--C~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      ....++..+|++.+..+.+++|.|||+|  |++|+.+.|.++++++++.+.+.|+.||++++++++.+|+|+++||+++|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~f   90 (111)
T cd02965          11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFF   90 (111)
T ss_pred             CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEE
Confidence            4567899999998888899999999997  99999999999999999998899999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHH
Q 015368          135 VAGVRQFQFFGERTRDVIS  153 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~  153 (408)
                      ++|+.+.++.|..+.+++.
T Consensus        91 kdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          91 RDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             ECCEEEEEEeCccCHHHHh
Confidence            9999999999999988765

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.81  E-value=2.1e-19  Score=137.22  Aligned_cols=98  Identities=34%  Similarity=0.641  Sum_probs=88.8

Q ss_pred             cEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        58 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +..|++++|++.+ ..+++++|+||++||++|+.+.|.++++++.+++  ++.++.+||+++ +++..+++.++|++++|
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~   80 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFF   80 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEE
Confidence            5689999999877 4468999999999999999999999999999976  699999999987 68899999999999999


Q ss_pred             eCCe--EeEEeeCCCCHHHHHHHH
Q 015368          135 VAGV--RQFQFFGERTRDVISAWV  156 (408)
Q Consensus       135 ~~g~--~~~~~~g~~~~~~l~~~i  156 (408)
                      .+|+  ...+|.|..+.+.|.+||
T Consensus        81 ~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          81 PAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             cCCCcCCceEccCCcCHHHHHhhC
Confidence            9886  578899999999999885

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.80  E-value=4.4e-19  Score=135.05  Aligned_cols=94  Identities=29%  Similarity=0.506  Sum_probs=84.2

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ  140 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~  140 (408)
                      ++|++. .++++++|.|||+||++|+++.|.++++++.+++   .+.++.+||++.++++++|+|.++||+++|++| ..
T Consensus         7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~-~~   84 (104)
T cd03000           7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD-LA   84 (104)
T ss_pred             hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-Cc
Confidence            567664 4577999999999999999999999999999854   599999999999999999999999999999877 56


Q ss_pred             EEeeCCCCHHHHHHHHHhH
Q 015368          141 FQFFGERTRDVISAWVREK  159 (408)
Q Consensus       141 ~~~~g~~~~~~l~~~i~~~  159 (408)
                      .++.|..+.+.+.+|+++.
T Consensus        85 ~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          85 YNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             eeecCCCCHHHHHHHHHhh
Confidence            7899999999999999864

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.80  E-value=4.8e-19  Score=135.48  Aligned_cols=99  Identities=36%  Similarity=0.672  Sum_probs=89.4

Q ss_pred             cEEcChhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCcc-cHhHHHHcCCCcCcEEEE
Q 015368           58 VVSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYL-EKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        58 ~~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~~  133 (408)
                      +..+++++|+..+. .+++++|.||++||++|+++.|.|.++++.++  +++.++.+||+. ++++|++|+|+++|++++
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~   81 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF   81 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence            46788899998775 45599999999999999999999999999997  379999999999 999999999999999999


Q ss_pred             EeCC-eEeEEeeCCCCHHHHHHHH
Q 015368          134 FVAG-VRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       134 ~~~g-~~~~~~~g~~~~~~l~~~i  156 (408)
                      |++| +....|.|.++.+.|.+||
T Consensus        82 ~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          82 FPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             EeCCCCCccccCCccCHHHHHhhC
Confidence            9955 6778899999999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>TIGR01068 thioredoxin thioredoxin

Probab=99.80  E-value=1.3e-18  Score=132.05  Aligned_cols=100  Identities=28%  Similarity=0.495  Sum_probs=90.9

Q ss_pred             cChhhHHHHHcC-CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368           61 LNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        61 l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      ++.++|...+.+ +++++|.||++||++|+.+.|.+.++++.+.+++.|+.||+++++.++++|+|.++|+++++++|+.
T Consensus         1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~   80 (101)
T TIGR01068         1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKE   80 (101)
T ss_pred             CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcE
Confidence            356778876644 5699999999999999999999999999998789999999999999999999999999999999988


Q ss_pred             eEEeeCCCCHHHHHHHHHhHh
Q 015368          140 QFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       140 ~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ..++.|..+.+.+.+|+++.+
T Consensus        81 ~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        81 VDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             eeeecCCCCHHHHHHHHHhhC
Confidence            889999999999999998753

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.80  E-value=9.6e-19  Score=140.10  Aligned_cols=98  Identities=17%  Similarity=0.338  Sum_probs=88.2

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc--HhHHHHcCCCcCcEEEEEe-CCeEe
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--KDLAKEYNILAYPTLYLFV-AGVRQ  140 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~-~g~~~  140 (408)
                      ..++..+.++++++|+|||+||++|+.+.|.+.++++.+++++.|+.||++..  .+++++|+|.++||+++|+ +|+++
T Consensus        11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v   90 (142)
T cd02950          11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEE   90 (142)
T ss_pred             CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEE
Confidence            45677778899999999999999999999999999999987788888887754  5889999999999999996 89999


Q ss_pred             EEeeCCCCHHHHHHHHHhHhC
Q 015368          141 FQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       141 ~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      .++.|..+.+.|.++|.+.+.
T Consensus        91 ~~~~G~~~~~~l~~~l~~l~~  111 (142)
T cd02950          91 GQSIGLQPKQVLAQNLDALVA  111 (142)
T ss_pred             EEEeCCCCHHHHHHHHHHHHc
Confidence            999999999999999998873

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.80  E-value=1.4e-18  Score=135.98  Aligned_cols=99  Identities=17%  Similarity=0.162  Sum_probs=85.3

Q ss_pred             ChhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE-EEeCCe
Q 015368           62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY-LFVAGV  138 (408)
Q Consensus        62 ~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~-~~~~g~  138 (408)
                      +..+|++.+  .++++++|.|||+||+||+.+.|.++++++++++.+.|+.||+|+++++++.|+|++.|+++ +|++|+
T Consensus        10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~   89 (142)
T PLN00410         10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKH   89 (142)
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEEEECCe
Confidence            467888777  45789999999999999999999999999999888999999999999999999999877666 888997


Q ss_pred             -EeEEeeC--------CCCHHHHHHHHHhHh
Q 015368          139 -RQFQFFG--------ERTRDVISAWVREKM  160 (408)
Q Consensus       139 -~~~~~~g--------~~~~~~l~~~i~~~~  160 (408)
                       .+.+..|        ..+.++|.+-++..+
T Consensus        90 ~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~  120 (142)
T PLN00410         90 IMIDLGTGNNNKINWALKDKQEFIDIVETVY  120 (142)
T ss_pred             EEEEEecccccccccccCCHHHHHHHHHHHH
Confidence             7788888        566777777666554

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.79  E-value=7.8e-19  Score=133.18  Aligned_cols=97  Identities=36%  Similarity=0.680  Sum_probs=90.3

Q ss_pred             EcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHh--cCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC
Q 015368           60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG  137 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~--~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g  137 (408)
                      +++.++|.+.+.++++++|.||++||++|+.+.|.|.++++.+  ++++.++.|||+++..++++|+|+++|++++|++|
T Consensus         2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~   81 (101)
T cd02961           2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG   81 (101)
T ss_pred             cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence            5788899999988889999999999999999999999999999  46999999999999999999999999999999966


Q ss_pred             -eEeEEeeCCCCHHHHHHHH
Q 015368          138 -VRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       138 -~~~~~~~g~~~~~~l~~~i  156 (408)
                       ....+|.|..+.+.+.+|+
T Consensus        82 ~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          82 SKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CcccccCCCCcCHHHHHhhC
Confidence             7889999999999998875

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.79  E-value=6e-19  Score=134.40  Aligned_cols=93  Identities=19%  Similarity=0.271  Sum_probs=84.8

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcc----cHhHHHHcCCCcCcEEEEEe-
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----EKDLAKEYNILAYPTLYLFV-  135 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~----~~~~~~~~~i~~~Pt~~~~~-  135 (408)
                      +.|++.+.++++++|+|||+||++|+.+.|.+   .++++.+++++.++.||+++    ..+++++|+|.++||+++|+ 
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~   81 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP   81 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence            46778888999999999999999999999988   67888887789999999987    57899999999999999998 


Q ss_pred             -CCeEeEEeeCCCCHHHHHHHH
Q 015368          136 -AGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       136 -~g~~~~~~~g~~~~~~l~~~i  156 (408)
                       +|+.+.++.|..+.++|.++|
T Consensus        82 ~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          82 GGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             CCCCCCcccccccCHHHHHHHh
Confidence             788889999999999998887

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.79  E-value=3.3e-18  Score=131.39  Aligned_cols=90  Identities=23%  Similarity=0.284  Sum_probs=81.9

Q ss_pred             CCcEEcCh-hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNG-KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~-~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      ..+..++. ++|.+.+.++++++|+||++||++|+.+.|.++++++++. ++.|+.||++++++++++|+|.++||+++|
T Consensus         4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l~~~~~v~~vPt~l~f   82 (113)
T cd02989           4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFLVEKLNIKVLPTVILF   82 (113)
T ss_pred             CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHHHHHCCCccCCEEEEE
Confidence            35566666 8999999888999999999999999999999999999987 599999999999999999999999999999


Q ss_pred             eCCeEeEEeeCC
Q 015368          135 VAGVRQFQFFGE  146 (408)
Q Consensus       135 ~~g~~~~~~~g~  146 (408)
                      ++|+.+.++.|.
T Consensus        83 k~G~~v~~~~g~   94 (113)
T cd02989          83 KNGKTVDRIVGF   94 (113)
T ss_pred             ECCEEEEEEECc
Confidence            999988887664

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.6e-18  Score=129.72  Aligned_cols=86  Identities=27%  Similarity=0.453  Sum_probs=78.0

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHH
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD  150 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~  150 (408)
                      .++++++|+|||+||+||+.+.|.+.+++++|.+ +.|++||+|+..++++.++|...||+.++++|+.+.++.|.... 
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~-   96 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA-   96 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH-
Confidence            4469999999999999999999999999999997 99999999999999999999999999999999999999998544 


Q ss_pred             HHHHHHHh
Q 015368          151 VISAWVRE  158 (408)
Q Consensus       151 ~l~~~i~~  158 (408)
                      .+.+.+..
T Consensus        97 ~l~~~i~~  104 (106)
T KOG0907|consen   97 ELEKKIAK  104 (106)
T ss_pred             HHHHHHHh
Confidence            66666543

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.78  E-value=3.2e-18  Score=132.11  Aligned_cols=89  Identities=25%  Similarity=0.266  Sum_probs=81.2

Q ss_pred             CCcEEcChhhHHHHHcCC---CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSLNGKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      ..+..++.++|.+.+.+.   ++++|+||++||++|+.+.|.++++++++. ++.|+.||++++ +++++|+|.++||++
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l~~~~~i~~~Pt~~   81 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA-FLVNYLDIKVLPTLL   81 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HHHHhcCCCcCCEEE
Confidence            456788899999887544   899999999999999999999999999987 689999999999 999999999999999


Q ss_pred             EEeCCeEeEEeeCC
Q 015368          133 LFVAGVRQFQFFGE  146 (408)
Q Consensus       133 ~~~~g~~~~~~~g~  146 (408)
                      +|++|+.+.++.|.
T Consensus        82 ~f~~G~~v~~~~G~   95 (113)
T cd02957          82 VYKNGELIDNIVGF   95 (113)
T ss_pred             EEECCEEEEEEecH
Confidence            99999999999884

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.77  E-value=6e-18  Score=126.93  Aligned_cols=88  Identities=16%  Similarity=0.303  Sum_probs=83.1

Q ss_pred             HcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368           70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR  149 (408)
Q Consensus        70 ~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~  149 (408)
                      .+.+++++|.||++||++|+.+.|.++++++++++++.++.+|++++++++++++|.++|+++++++|+.+.++.|..+.
T Consensus        10 ~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~   89 (97)
T cd02949          10 HESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMK   89 (97)
T ss_pred             HhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccH
Confidence            36789999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 015368          150 DVISAWVR  157 (408)
Q Consensus       150 ~~l~~~i~  157 (408)
                      +++.+|++
T Consensus        90 ~~~~~~l~   97 (97)
T cd02949          90 SEYREFIE   97 (97)
T ss_pred             HHHHHhhC
Confidence            99998873

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.77  E-value=6.7e-18  Score=127.00  Aligned_cols=93  Identities=19%  Similarity=0.321  Sum_probs=82.4

Q ss_pred             hhhHHHHHcCC--CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368           63 GKNFSEFMGKN--RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ  140 (408)
Q Consensus        63 ~~~~~~~~~~~--~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~  140 (408)
                      .++|++.+...  ++++|+||++||++|+.+.|.++++++.+..++.++.+|+++.++++++|++.++||+++|++|+.+
T Consensus         2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~   81 (97)
T cd02984           2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIV   81 (97)
T ss_pred             HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCEEE
Confidence            46778777555  9999999999999999999999999999766899999999999999999999999999999999888


Q ss_pred             EEeeCCCCHHHHHHHH
Q 015368          141 FQFFGERTRDVISAWV  156 (408)
Q Consensus       141 ~~~~g~~~~~~l~~~i  156 (408)
                      .++.|. +.+.|.+.|
T Consensus        82 ~~~~g~-~~~~l~~~~   96 (97)
T cd02984          82 DRVSGA-DPKELAKKV   96 (97)
T ss_pred             EEEeCC-CHHHHHHhh
Confidence            888885 566666654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PTZ00051 thioredoxin; Provisional

Probab=99.75  E-value=2e-17  Score=124.64  Aligned_cols=90  Identities=27%  Similarity=0.452  Sum_probs=81.4

Q ss_pred             ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeE
Q 015368           62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQF  141 (408)
Q Consensus        62 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~  141 (408)
                      +.++++..+..+++++|+||++||++|+.+.|.++++++++. ++.++.||++++.+++++|+|.++||++++++|+.+.
T Consensus         7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~   85 (98)
T PTZ00051          7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVD   85 (98)
T ss_pred             CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEE
Confidence            456788888889999999999999999999999999999876 6999999999999999999999999999999999999


Q ss_pred             EeeCCCCHHHHH
Q 015368          142 QFFGERTRDVIS  153 (408)
Q Consensus       142 ~~~g~~~~~~l~  153 (408)
                      ++.|. ..++|.
T Consensus        86 ~~~G~-~~~~~~   96 (98)
T PTZ00051         86 TLLGA-NDEALK   96 (98)
T ss_pred             EEeCC-CHHHhh
Confidence            99996 555554

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.74  E-value=2.4e-17  Score=154.47  Aligned_cols=108  Identities=20%  Similarity=0.452  Sum_probs=93.9

Q ss_pred             CCccCCCcEEcChhhHHHHHc---CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccH-hHH-HHcC
Q 015368           51 PLLYAKDVVSLNGKNFSEFMG---KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEK-DLA-KEYN  124 (408)
Q Consensus        51 ~~~~~~~~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~-~~~-~~~~  124 (408)
                      ....+..++.|+..+|+..+.   .+++++|.||||||++|+.+.|.|+++++++++ ++.|+.|||+.+. .++ ++|+
T Consensus       346 dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~  425 (463)
T TIGR00424       346 DIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQ  425 (463)
T ss_pred             cccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcC
Confidence            344567899999999998874   788999999999999999999999999999987 5999999999764 454 7899


Q ss_pred             CCcCcEEEEEeCCe-EeEEee-CCCCHHHHHHHHHh
Q 015368          125 ILAYPTLYLFVAGV-RQFQFF-GERTRDVISAWVRE  158 (408)
Q Consensus       125 i~~~Pt~~~~~~g~-~~~~~~-g~~~~~~l~~~i~~  158 (408)
                      |.++||+++|++|. ....|. |.++.+.|..||+-
T Consensus       426 I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       426 LGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             CCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            99999999999874 457797 58999999999974

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.73  E-value=3.7e-17  Score=125.98  Aligned_cols=96  Identities=24%  Similarity=0.452  Sum_probs=79.3

Q ss_pred             CcEEcChhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcc--cHhHHHHcCCCcCcE
Q 015368           57 DVVSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYL--EKDLAKEYNILAYPT  130 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~--~~~~~~~~~i~~~Pt  130 (408)
                      .+.+++.++|+..+. .+++++|+|||+||++|+.+.|.|+++++.+++   .+.++.|||+.  ++++|++|+|+++||
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt   81 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT   81 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence            578899999998874 456999999999999999999999999998864   59999999864  678999999999999


Q ss_pred             EEEEeCCeEe----EEeeCC-CCHHHH
Q 015368          131 LYLFVAGVRQ----FQFFGE-RTRDVI  152 (408)
Q Consensus       131 ~~~~~~g~~~----~~~~g~-~~~~~l  152 (408)
                      +++|++|...    ..|.|+ +..+.+
T Consensus        82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~  108 (114)
T cd02992          82 LRYFPPFSKEATDGLKQEGPERDVNEL  108 (114)
T ss_pred             EEEECCCCccCCCCCcccCCccCHHHH
Confidence            9999977421    345565 554444

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.73  E-value=4.7e-17  Score=121.27  Aligned_cols=77  Identities=14%  Similarity=0.161  Sum_probs=69.9

Q ss_pred             hhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368           64 KNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ  140 (408)
Q Consensus        64 ~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~  140 (408)
                      +++++.+.  ++++++|.|+|+||++|+.+.|.++++++++++.+.|+.||+|+.+++++.|+|+..||+++|++|+..
T Consensus         3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~   81 (114)
T cd02986           3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM   81 (114)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence            45666553  589999999999999999999999999999985599999999999999999999999999999999654

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.73  E-value=3.9e-17  Score=153.04  Aligned_cols=108  Identities=22%  Similarity=0.489  Sum_probs=95.1

Q ss_pred             CccCCCcEEcChhhHHHHH---cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc-ccHhHHH-HcCC
Q 015368           52 LLYAKDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-LEKDLAK-EYNI  125 (408)
Q Consensus        52 ~~~~~~~~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~-~~~~~~~-~~~i  125 (408)
                      ...+..+..|+.++|++.+   ..+++++|+||||||++|+.+.|.|+++++.+++ ++.|+.|||+ .+.++|+ +|+|
T Consensus       341 l~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I  420 (457)
T PLN02309        341 IFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL  420 (457)
T ss_pred             ccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC
Confidence            3355689999999999876   4789999999999999999999999999999976 6999999999 8888997 6999


Q ss_pred             CcCcEEEEEeCCe-EeEEeeC-CCCHHHHHHHHHhH
Q 015368          126 LAYPTLYLFVAGV-RQFQFFG-ERTRDVISAWVREK  159 (408)
Q Consensus       126 ~~~Pt~~~~~~g~-~~~~~~g-~~~~~~l~~~i~~~  159 (408)
                      .++||+++|.+|. ....|.| .++.+.|..|++..
T Consensus       421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~  456 (457)
T PLN02309        421 GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL  456 (457)
T ss_pred             ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence            9999999999764 5677875 69999999999753

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.73  E-value=9.9e-17  Score=124.57  Aligned_cols=100  Identities=12%  Similarity=0.164  Sum_probs=84.2

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-----------hHHHHcC
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----------DLAKEYN  124 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----------~~~~~~~  124 (408)
                      +.+..++.+++.+.+.+++.++|+|+++|||+|+.+.|.+.+++++.  ++.++.||.+.+.           ++.++|+
T Consensus         6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~   83 (122)
T TIGR01295         6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFG   83 (122)
T ss_pred             ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence            35667888999999999999999999999999999999999999983  5778888887542           5556665


Q ss_pred             ----CCcCcEEEEEeCCeEeEEeeC-CCCHHHHHHHHH
Q 015368          125 ----ILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVR  157 (408)
Q Consensus       125 ----i~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~  157 (408)
                          |.++||+++|++|+.+.+..| ..+.++|.+|+.
T Consensus        84 i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        84 IPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             CcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence                556999999999999999999 456899988763

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.72  E-value=2.1e-16  Score=133.16  Aligned_cols=87  Identities=13%  Similarity=0.264  Sum_probs=74.7

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-----------------------hHHHHcCCCc
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----------------------DLAKEYNILA  127 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----------------------~~~~~~~i~~  127 (408)
                      .++++++|+|||+||++|++++|.+.++++.   ++.++.|+.+++.                       .+++.|++.+
T Consensus        66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~  142 (185)
T PRK15412         66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG  142 (185)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence            4689999999999999999999999998753   6888888865432                       2456789999


Q ss_pred             CcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          128 YPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       128 ~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|++++++ +|++..++.|..+.+.+.++++..+
T Consensus       143 ~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~  176 (185)
T PRK15412        143 APETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW  176 (185)
T ss_pred             CCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence            99999998 9999999999999999999998776

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.72  E-value=7.7e-17  Score=127.11  Aligned_cols=98  Identities=17%  Similarity=0.317  Sum_probs=85.2

Q ss_pred             hhHHHHHcCC-CcEEEEEecCCChhHHhhhHHHH---HHHHHhcCCcEEEEEeCccc-------------HhHHHHcCCC
Q 015368           64 KNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFA---AAAKMLKGEADLVMVDAYLE-------------KDLAKEYNIL  126 (408)
Q Consensus        64 ~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~---~~~~~~~~~v~~~~v~~~~~-------------~~~~~~~~i~  126 (408)
                      +.+..+.+++ ++++|.|||+||++|+.++|.+.   .+.+.+++++.++.||.+++             .+++++|+|.
T Consensus         4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~   83 (125)
T cd02951           4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVR   83 (125)
T ss_pred             HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCc
Confidence            4566777888 99999999999999999999885   56666766788999998864             7899999999


Q ss_pred             cCcEEEEEe-C-CeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          127 AYPTLYLFV-A-GVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       127 ~~Pt~~~~~-~-g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ++||+++++ + |+.+.++.|..+.+.+.++|+..+.
T Consensus        84 ~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~  120 (125)
T cd02951          84 FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE  120 (125)
T ss_pred             cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence            999999999 5 6889999999999999999987653

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>PTZ00102 disulphide isomerase; Provisional

Probab=99.71  E-value=8.7e-17  Score=156.89  Aligned_cols=115  Identities=23%  Similarity=0.391  Sum_probs=101.5

Q ss_pred             CCCccCCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHHHHcCCC
Q 015368           50 WPLLYAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNIL  126 (408)
Q Consensus        50 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~  126 (408)
                      .|......+..+++++|++.+ +++++++|+|||+||++|+.+.|.|+++++.+++  .+.++.+||+.+...+++++++
T Consensus       351 ~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~  430 (477)
T PTZ00102        351 IPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWS  430 (477)
T ss_pred             CCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCc
Confidence            344446678999999999874 7789999999999999999999999999999875  6999999999999999999999


Q ss_pred             cCcEEEEEeCCe-EeEEeeCCCCHHHHHHHHHhHhCCCc
Q 015368          127 AYPTLYLFVAGV-RQFQFFGERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       127 ~~Pt~~~~~~g~-~~~~~~g~~~~~~l~~~i~~~~~~~~  164 (408)
                      ++||+++|++|. ...+|.|.++.+.|.+||.++...+.
T Consensus       431 ~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~  469 (477)
T PTZ00102        431 AFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPF  469 (477)
T ss_pred             ccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCc
Confidence            999999999664 45689999999999999999886533

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=2.1e-16  Score=146.20  Aligned_cols=224  Identities=16%  Similarity=0.204  Sum_probs=143.8

Q ss_pred             cCCCcEEcChhhHHHHHcCC-CcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcc--cHhHHHHcCCCc
Q 015368           54 YAKDVVSLNGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYL--EKDLAKEYNILA  127 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~--~~~~~~~~~i~~  127 (408)
                      .++.++.|+.++|+.++... +-.+|.||++||+||+.++|.|+++++.+.+   -+.++.|||.+  |..+|+.|+|++
T Consensus        37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~  116 (606)
T KOG1731|consen   37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG  116 (606)
T ss_pred             CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence            34789999999999888544 5899999999999999999999999999877   68999999975  678999999999


Q ss_pred             CcEEEEEeCC----eEeEEeeCCCCHHHHHHHHHhHhC-----------C---CcccccChhHHHHHhccC-CeEEEEEe
Q 015368          128 YPTLYLFVAG----VRQFQFFGERTRDVISAWVREKMT-----------L---GTYSITTTDEAERILTVE-SKLVLGFL  188 (408)
Q Consensus       128 ~Pt~~~~~~g----~~~~~~~g~~~~~~l~~~i~~~~~-----------~---~~~~i~~~~~~~~~~~~~-~~~vi~f~  188 (408)
                      ||++.+|..+    ..-..+.|.....++.+.+.+.+.           |   ++.+-++.+++.+..... +.+.|+|-
T Consensus       117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e  196 (606)
T KOG1731|consen  117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFE  196 (606)
T ss_pred             CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEe
Confidence            9999999732    122455676667777777766652           2   344444555665554433 24444442


Q ss_pred             cCCCCcCHHHHHHHhccCCceeEEEecCHhHHhh--cCCCCCCCCCeEEEeecCCCcccccCCc---CCHHHHHHHHhcC
Q 015368          189 HDLEGMESEELAAASKLHSDVNFYQTTSADVAEF--FHIHPKSKRPALIFLHLEAGKATPFRHQ---FTRLAIANFVTHT  263 (408)
Q Consensus       189 ~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~--~~i~~~~~~p~l~~~~~~~~~~~~y~g~---~~~~~i~~fi~~~  263 (408)
                      .....-....+..... .+.+....+.+.+....  +++.   +.|..+++++++..+..-.+.   .-.+.|.++|-+.
T Consensus       197 ~~~s~lg~~~~l~~l~-~~~v~vr~~~d~q~~~~~~l~~~---~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~  272 (606)
T KOG1731|consen  197 TEPSDLGWANLLNDLP-SKQVGVRARLDTQNFPLFGLKPD---NFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDK  272 (606)
T ss_pred             cCCcccHHHHHHhhcc-CCCcceEEEecchhccccccCCC---CchhhhhhcCCcccccccccccHHHHHHHHHHHhcCc
Confidence            2222223333333221 23344444433333333  4554   578889999887554444333   2237888888653


Q ss_pred             C---CCceEeecccccccccc
Q 015368          264 K---HPLVVTLTIHNAQFVFQ  281 (408)
Q Consensus       264 ~---~p~v~~lt~~~~~~~~~  281 (408)
                      .   -|.+...+..+....+.
T Consensus       273 ~~a~~pt~~p~~~~~~~~~Id  293 (606)
T KOG1731|consen  273 NEASGPTLHPITATTAAPTID  293 (606)
T ss_pred             cccCCCCcCcccccccchhhh
Confidence            3   34444444333444333

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.70  E-value=2.5e-16  Score=130.28  Aligned_cols=102  Identities=17%  Similarity=0.211  Sum_probs=86.6

Q ss_pred             CCCcEEcCh-hhHHHHHcCC---CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           55 AKDVVSLNG-KNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        55 ~~~~~~l~~-~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      ...+.+++. ++|...+.+.   .+++|.|||+||++|+.+.|.+.++++++. .+.|++||+++. .++.+|+|.++||
T Consensus        61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l~~~f~v~~vPT  138 (175)
T cd02987          61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GASDEFDTDALPA  138 (175)
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch-hhHHhCCCCCCCE
Confidence            467888988 9999887432   499999999999999999999999999986 699999999987 8999999999999


Q ss_pred             EEEEeCCeEeEEeeCC-------CCHHHHHHHHHh
Q 015368          131 LYLFVAGVRQFQFFGE-------RTRDVISAWVRE  158 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~-------~~~~~l~~~i~~  158 (408)
                      +++|++|+.+.++.|.       .+.+.|..++.+
T Consensus       139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~  173 (175)
T cd02987         139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE  173 (175)
T ss_pred             EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence            9999999888877653       445555555543

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.70  E-value=2.8e-16  Score=116.93  Aligned_cols=91  Identities=26%  Similarity=0.493  Sum_probs=84.3

Q ss_pred             hHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEee
Q 015368           65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF  144 (408)
Q Consensus        65 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~  144 (408)
                      +|+..+..+++++|.||++||++|+.+.|.++++++. .+++.++.+|++.+++++++|++.++|+++++++|+....+.
T Consensus         2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~   80 (93)
T cd02947           2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVV   80 (93)
T ss_pred             chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEe
Confidence            5677777779999999999999999999999999988 558999999999999999999999999999999998899999


Q ss_pred             CCCCHHHHHHHH
Q 015368          145 GERTRDVISAWV  156 (408)
Q Consensus       145 g~~~~~~l~~~i  156 (408)
                      |..+.+.|.+||
T Consensus        81 g~~~~~~l~~~i   92 (93)
T cd02947          81 GADPKEELEEFL   92 (93)
T ss_pred             cCCCHHHHHHHh
Confidence            999999998887

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.70  E-value=2.2e-16  Score=121.42  Aligned_cols=94  Identities=14%  Similarity=0.259  Sum_probs=82.2

Q ss_pred             HHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe--EEe
Q 015368           66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ--FQF  143 (408)
Q Consensus        66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~--~~~  143 (408)
                      +.+.+.++..++|.|||+||++|+.+.|.++++++.+ +.+.+..||.+++++++++|+|.++||++++++|...  .++
T Consensus        15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~   93 (113)
T cd02975          15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRY   93 (113)
T ss_pred             HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEE
Confidence            5555566778999999999999999999999999887 5799999999999999999999999999999976433  378


Q ss_pred             eCCCCHHHHHHHHHhHh
Q 015368          144 FGERTRDVISAWVREKM  160 (408)
Q Consensus       144 ~g~~~~~~l~~~i~~~~  160 (408)
                      .|..+..++.+||...+
T Consensus        94 ~G~~~~~el~~~i~~i~  110 (113)
T cd02975          94 YGLPAGYEFASLIEDIV  110 (113)
T ss_pred             EecCchHHHHHHHHHHH
Confidence            89999999999997654

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=5.1e-17  Score=150.99  Aligned_cols=115  Identities=26%  Similarity=0.487  Sum_probs=98.9

Q ss_pred             CCCCCCCCccC-CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHH
Q 015368           45 NNNHTWPLLYA-KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLA  120 (408)
Q Consensus        45 ~~~~~~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~  120 (408)
                      ..++..|...+ ..+..+-++||+.++ +++|.|||.||||||+||+++.|.|+++++.|++  ++.++++|.+.|.  .
T Consensus       354 ~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd--~  431 (493)
T KOG0190|consen  354 LKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAND--V  431 (493)
T ss_pred             cccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecccccc--C
Confidence            34445565555 679999999999877 7889999999999999999999999999999988  8999999999885  3


Q ss_pred             HHcCCCcCcEEEEEeCC--eEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          121 KEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       121 ~~~~i~~~Pt~~~~~~g--~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ....+.++||++++..|  +.+..|.|.++.+++..|+.+...
T Consensus       432 ~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  432 PSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT  474 (493)
T ss_pred             ccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence            55677889999999955  368899999999999999987764

>PTZ00062 glutaredoxin; Provisional

Probab=99.69  E-value=2.5e-15  Score=126.08  Aligned_cols=162  Identities=11%  Similarity=0.117  Sum_probs=113.3

Q ss_pred             ChhhHHHHHcCC-CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368           62 NGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ  140 (408)
Q Consensus        62 ~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~  140 (408)
                      +.+++++.+.++ ..++++|||+||++|+.+.|.+.++++++. ++.|+.||.+        |+|.++||+++|++|+.+
T Consensus         5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d--------~~V~~vPtfv~~~~g~~i   75 (204)
T PTZ00062          5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA--------DANNEYGVFEFYQNSQLI   75 (204)
T ss_pred             CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc--------cCcccceEEEEEECCEEE
Confidence            456788777654 779999999999999999999999999996 7999999976        999999999999999999


Q ss_pred             EEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEec-----CCCCcCHHHHHHHhccCCceeEEE-e
Q 015368          141 FQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLH-----DLEGMESEELAAASKLHSDVNFYQ-T  214 (408)
Q Consensus       141 ~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~-----~~~~~~~~~~~~~a~~~~~~~f~~-~  214 (408)
                      .++.|. ++..+..++.+..+.....- ..+.+++++++++.++  |..     ++|..+.+....+.+..-.+...- .
T Consensus        76 ~r~~G~-~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~Vvv--f~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~  151 (204)
T PTZ00062         76 NSLEGC-NTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHKILL--FMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIF  151 (204)
T ss_pred             eeeeCC-CHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCEEE--EEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcC
Confidence            999987 58899999988876544321 2234555555555333  444     466666665555554433333222 2


Q ss_pred             cCHhHHhhcC-CCCCCCCCeEEE
Q 015368          215 TSADVAEFFH-IHPKSKRPALIF  236 (408)
Q Consensus       215 ~~~~l~~~~~-i~~~~~~p~l~~  236 (408)
                      .+.++.+.+. .++...+|.+.+
T Consensus       152 ~d~~~~~~l~~~sg~~TvPqVfI  174 (204)
T PTZ00062        152 EDPDLREELKVYSNWPTYPQLYV  174 (204)
T ss_pred             CCHHHHHHHHHHhCCCCCCeEEE
Confidence            4555544432 121124676663

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.66  E-value=1.8e-15  Score=126.74  Aligned_cols=103  Identities=19%  Similarity=0.324  Sum_probs=87.4

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc--------------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------------------  115 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------------------  115 (408)
                      .+..++++.++....++++++|+||++||++|+...|.+.++++++++ ++.++.|+++.                    
T Consensus        45 ~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~  124 (173)
T PRK03147         45 VLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAI  124 (173)
T ss_pred             EeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEE
Confidence            455667766654444679999999999999999999999999999976 68999998763                    


Q ss_pred             --cHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          116 --EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       116 --~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                        +..+++.|++.++|++++++ +|+++..+.|..+.+++.+++.+.
T Consensus       125 d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~  171 (173)
T PRK03147        125 DKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI  171 (173)
T ss_pred             CCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence              35678999999999999998 898888999999999999988753

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1e-15  Score=126.92  Aligned_cols=99  Identities=25%  Similarity=0.334  Sum_probs=88.5

Q ss_pred             ChhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368           62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        62 ~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      ++..|+..+  ..++.++|+|+|+||+||+...|.|..++.+|. +..|.+||+|+.+..+..+||+..||+++|+||..
T Consensus         8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng~k   86 (288)
T KOG0908|consen    8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNGVK   86 (288)
T ss_pred             CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHhhchhhhcCcccCceEEEEecCeE
Confidence            456777666  456799999999999999999999999999997 79999999999999999999999999999999988


Q ss_pred             eEEeeCCCCHHHHHHHHHhHhCC
Q 015368          140 QFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       140 ~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      +.++.|. ++..|++.+.++...
T Consensus        87 id~~qGA-d~~gLe~kv~~~~st  108 (288)
T KOG0908|consen   87 IDQIQGA-DASGLEEKVAKYAST  108 (288)
T ss_pred             eeeecCC-CHHHHHHHHHHHhcc
Confidence            8888886 788899999888743

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.64  E-value=2.4e-15  Score=142.91  Aligned_cols=101  Identities=22%  Similarity=0.239  Sum_probs=82.5

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEE------------------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMV------------------------  111 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v------------------------  111 (408)
                      .+.++++++..  +.++++++|+|||+||++|+.++|.+++++++++. ++.++.|                        
T Consensus        42 ~l~D~dG~~v~--lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~  119 (521)
T PRK14018         42 KTADNRPASVY--LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYP  119 (521)
T ss_pred             EeecCCCceee--ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCc
Confidence            33445554433  24789999999999999999999999999999874 5666554                        


Q ss_pred             ----eCcccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          112 ----DAYLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       112 ----~~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                          ++|.+..+++.|+|+++|++++++ +|+++.++.|.++.++|.++|+..
T Consensus       120 ~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~  172 (521)
T PRK14018        120 KLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP  172 (521)
T ss_pred             ccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence                345567789999999999998886 999999999999999999999843

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.63  E-value=6.7e-15  Score=118.43  Aligned_cols=86  Identities=12%  Similarity=0.216  Sum_probs=69.0

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc------------HhHH-HHc---CCCcCcEEEEEe
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE------------KDLA-KEY---NILAYPTLYLFV  135 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~------------~~~~-~~~---~i~~~Pt~~~~~  135 (408)
                      .++..+|+|||+||++|++++|.+++++++++  +.++.|+.++.            .+.. ..|   ++.++||+++++
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID  126 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVN  126 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEe
Confidence            45678999999999999999999999999984  66666666542            2333 345   889999999998


Q ss_pred             -CCeE-eEEeeCCCCHHHHHHHHHhH
Q 015368          136 -AGVR-QFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       136 -~g~~-~~~~~g~~~~~~l~~~i~~~  159 (408)
                       +|.. ...+.|..+.+++.+.+.+.
T Consensus       127 ~~G~~i~~~~~G~~s~~~l~~~I~~l  152 (153)
T TIGR02738       127 VNTRKAYPVLQGAVDEAELANRMDEI  152 (153)
T ss_pred             CCCCEEEEEeecccCHHHHHHHHHHh
Confidence             6654 45789999999999888764

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.61  E-value=4.7e-15  Score=112.77  Aligned_cols=88  Identities=22%  Similarity=0.263  Sum_probs=78.7

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCC--cCcEEEEEeC--CeEeEEeeCCC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL--AYPTLYLFVA--GVRQFQFFGER  147 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~--~~Pt~~~~~~--g~~~~~~~g~~  147 (408)
                      .++++++.||++||++|+.+.|.++++++++++++.|+.||+++++++++.||+.  ++|+++++++  |+......|..
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~   90 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL   90 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence            3789999999999999999999999999999999999999999999999999999  9999999997  64444344556


Q ss_pred             CHHHHHHHHHhH
Q 015368          148 TRDVISAWVREK  159 (408)
Q Consensus       148 ~~~~l~~~i~~~  159 (408)
                      +.+.|.+|+.+.
T Consensus        91 ~~~~l~~fi~~~  102 (103)
T cd02982          91 TAESLEEFVEDF  102 (103)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.61  E-value=9.2e-15  Score=122.47  Aligned_cols=99  Identities=15%  Similarity=0.191  Sum_probs=83.3

Q ss_pred             CCCcEEcChhhHHHHH-cC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           55 AKDVVSLNGKNFSEFM-GK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~-~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      .+.+..++..+|...+ ..  +.+|+|.||++||++|+.+.|.|+++++++. .+.|++||++..   +..|++.++||+
T Consensus        81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~~---~~~~~i~~lPTl  156 (192)
T cd02988          81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQC---IPNYPDKNLPTI  156 (192)
T ss_pred             CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HhhCCCCCCCEE
Confidence            4688899999998655 33  3589999999999999999999999999987 699999998753   689999999999


Q ss_pred             EEEeCCeEeEEeeCC-------CCHHHHHHHHH
Q 015368          132 YLFVAGVRQFQFFGE-------RTRDVISAWVR  157 (408)
Q Consensus       132 ~~~~~g~~~~~~~g~-------~~~~~l~~~i~  157 (408)
                      ++|++|+.+.++.|.       .+.++|..++.
T Consensus       157 liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~  189 (192)
T cd02988         157 LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV  189 (192)
T ss_pred             EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence            999999998888873       45555555554

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.61  E-value=1.6e-14  Score=120.38  Aligned_cols=88  Identities=20%  Similarity=0.292  Sum_probs=74.1

Q ss_pred             HcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC-----------------------cccHhHHHHcCCC
Q 015368           70 MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA-----------------------YLEKDLAKEYNIL  126 (408)
Q Consensus        70 ~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~-----------------------~~~~~~~~~~~i~  126 (408)
                      ..++++++|+||++||++|++++|.++++++.   ++.++.|+.                       |.+..+++.|++.
T Consensus        60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~  136 (173)
T TIGR00385        60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVY  136 (173)
T ss_pred             hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCe
Confidence            34689999999999999999999999988764   466666664                       3334567789999


Q ss_pred             cCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          127 AYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       127 ~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++|++++++ +|++..++.|..+.+++.+++++.+
T Consensus       137 ~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~  171 (173)
T TIGR00385       137 GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM  171 (173)
T ss_pred             eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence            999988887 9999999999999999999998876

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.60  E-value=1.2e-14  Score=105.57  Aligned_cols=80  Identities=18%  Similarity=0.363  Sum_probs=72.8

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHH
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW  155 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~  155 (408)
                      .+..||++||++|+.+.|.+++++++++..+.+..||++++++++++||+.++|++++  +|+  .++.|..+.+++.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~   77 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEA   77 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHH
Confidence            4678999999999999999999999998789999999999999999999999999976  774  378899999999999


Q ss_pred             HHhH
Q 015368          156 VREK  159 (408)
Q Consensus       156 i~~~  159 (408)
                      +++.
T Consensus        78 l~~~   81 (82)
T TIGR00411        78 IKKR   81 (82)
T ss_pred             HHhh
Confidence            8765

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.57  E-value=2.9e-14  Score=116.50  Aligned_cols=84  Identities=13%  Similarity=0.185  Sum_probs=71.0

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-------------HhHHHHcCC--CcCcEEEEEe-CCeEe
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------------KDLAKEYNI--LAYPTLYLFV-AGVRQ  140 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-------------~~~~~~~~i--~~~Pt~~~~~-~g~~~  140 (408)
                      +|+||++||++|++++|.+++++++++  +.++.|+.++.             ..+.+.|++  .++|++++++ +|++.
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~  150 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA  150 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence            788999999999999999999999984  78877776633             236678995  6999999998 89775


Q ss_pred             -EEeeCCCCHHHHHHHHHhHhCC
Q 015368          141 -FQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       141 -~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                       ..+.|..+.+++.+.+.+.+.-
T Consensus       151 ~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        151 LPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             EEEEECCCCHHHHHHHHHHHHhh
Confidence             4799999999999999888744

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.57  E-value=1.4e-14  Score=110.71  Aligned_cols=77  Identities=17%  Similarity=0.342  Sum_probs=67.9

Q ss_pred             ChhhHHHHHcC--CCcEEEEEec-------CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-------cHhHHHHcCC
Q 015368           62 NGKNFSEFMGK--NRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-------EKDLAKEYNI  125 (408)
Q Consensus        62 ~~~~~~~~~~~--~~~~~v~f~a-------~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-------~~~~~~~~~i  125 (408)
                      +.++|.+.+..  +++++|.|||       +||++|+.+.|.++++++++++++.|+.||+++       +.++.++++|
T Consensus         8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I   87 (119)
T cd02952           8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL   87 (119)
T ss_pred             CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc
Confidence            35667777754  7899999999       999999999999999999998789999999976       4589999999


Q ss_pred             C-cCcEEEEEeCCe
Q 015368          126 L-AYPTLYLFVAGV  138 (408)
Q Consensus       126 ~-~~Pt~~~~~~g~  138 (408)
                      . ++||+++|++|+
T Consensus        88 ~~~iPT~~~~~~~~  101 (119)
T cd02952          88 TTGVPTLLRWKTPQ  101 (119)
T ss_pred             ccCCCEEEEEcCCc
Confidence            9 999999998774

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.56  E-value=5.9e-15  Score=113.91  Aligned_cols=97  Identities=16%  Similarity=0.262  Sum_probs=73.1

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-hHHHHcCCCc--CcEEEEEe-CCeE
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLAKEYNILA--YPTLYLFV-AGVR  139 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-~~~~~~~i~~--~Pt~~~~~-~g~~  139 (408)
                      +.+..+..++++++|.|||+||++|+.+.|.+.+..+.......|+.|+.+.+. ...+.|++.+  +||+++++ +|+.
T Consensus        10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~   89 (117)
T cd02959          10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDV   89 (117)
T ss_pred             HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCC
Confidence            344556678899999999999999999999999987765444556666766554 4567899987  99999998 9977


Q ss_pred             eE---EeeCCCCHHHHHHHHHhHh
Q 015368          140 QF---QFFGERTRDVISAWVREKM  160 (408)
Q Consensus       140 ~~---~~~g~~~~~~l~~~i~~~~  160 (408)
                      +.   ...|..+.+.+...+....
T Consensus        90 ~~~~~~~~~~~~~~~f~~~~~~~~  113 (117)
T cd02959          90 HPEIINKKGNPNYKYFYSSAAQVT  113 (117)
T ss_pred             chhhccCCCCccccccCCCHHHHH
Confidence            65   4456677766666665443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.54  E-value=6.3e-14  Score=110.88  Aligned_cols=87  Identities=16%  Similarity=0.308  Sum_probs=70.7

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEe-----------------------CcccHhHH
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-----------------------AYLEKDLA  120 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~-----------------------~~~~~~~~  120 (408)
                      ..+.....++++++|+||++||++|++++|.++++++.+  ++.++.|+                       +|.+..++
T Consensus        16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   93 (127)
T cd03010          16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVG   93 (127)
T ss_pred             ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHH
Confidence            334433345899999999999999999999999998886  36666665                       34556788


Q ss_pred             HHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHH
Q 015368          121 KEYNILAYPTLYLFV-AGVRQFQFFGERTRDVI  152 (408)
Q Consensus       121 ~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l  152 (408)
                      +.|++.++|++++++ +|+++.++.|..+.+.|
T Consensus        94 ~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~  126 (127)
T cd03010          94 IDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW  126 (127)
T ss_pred             HhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence            899999999888887 99999999999887754

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.53  E-value=1.3e-11  Score=120.19  Aligned_cols=308  Identities=18%  Similarity=0.238  Sum_probs=209.5

Q ss_pred             CcEEcC-hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSLN-GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      .+..++ .++++..+....+.+|.|+.. ..  ......+.++++.+.+...+....  .+..+++.+++. .|++.+++
T Consensus       112 ~~~~i~~~~~~~~~~~~~~~~vi~~~~~-~~--~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~  185 (462)
T TIGR01130       112 AVKEIETVADLEAFLADDDVVVIGFFKD-LD--SELNDTFLSVAEKLRDVYFFFAHS--SDVAAFAKLGAF-PDSVVLFK  185 (462)
T ss_pred             CceeecCHHHHHHHHhcCCcEEEEEECC-CC--cHHHHHHHHHHHHhhhccceEEec--CCHHHHhhcCCC-CCcEEEec
Confidence            445554 677888887777888888765 22  366778888999887755533322  344677788765 35666665


Q ss_pred             -C--CeEeEEeeCCC--CHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCC-----cCHHHHHHHh-c
Q 015368          136 -A--GVRQFQFFGER--TRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEG-----MESEELAAAS-K  204 (408)
Q Consensus       136 -~--g~~~~~~~g~~--~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~-----~~~~~~~~~a-~  204 (408)
                       .  +.....|.|..  +.+.|..||....-|.+..+ +.+.+.......+ .+++|+.....     .....+..+| +
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~-~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~a~~  263 (462)
T TIGR01130       186 PKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEF-TQETAAKYFESGP-LVVLYYNVDESLDPFEELRNRFLEAAKK  263 (462)
T ss_pred             ccccccccccccCcccCCHHHHHHHHHHcCCCceEee-CCcchhhHhCCCC-ceeEEEEecCCchHHHHHHHHHHHHHHH
Confidence             2  22223567765  56899999999998888888 5566666776654 44444433222     2345666777 5


Q ss_pred             cCC-ceeEEEecC---HhHHhhcCCCCCCCCCeEEEeecCCCcccccCC-cCCHHHHHHHHhcCC---------------
Q 015368          205 LHS-DVNFYQTTS---ADVAEFFHIHPKSKRPALIFLHLEAGKATPFRH-QFTRLAIANFVTHTK---------------  264 (408)
Q Consensus       205 ~~~-~~~f~~~~~---~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g-~~~~~~i~~fi~~~~---------------  264 (408)
                      +.+ .+.|+.+..   ..+++.+++.. .+.|+++++...+.....+.+ .++.+.|.+|+++..               
T Consensus       264 ~~~~~i~f~~~d~~~~~~~~~~~~~~~-~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~  342 (462)
T TIGR01130       264 FRGKFVNFAVADEEDFGRELEYFGLKA-EKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPE  342 (462)
T ss_pred             CCCCeEEEEEecHHHhHHHHHHcCCCc-cCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCc
Confidence            664 788877643   45778888874 248999999865423445555 688899999998632               


Q ss_pred             --CCceEeeccccccccccC-CccE-EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccC
Q 015368          265 --HPLVVTLTIHNAQFVFQD-PRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV  339 (408)
Q Consensus       265 --~p~v~~lt~~~~~~~~~~-~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i  339 (408)
                        ...+..++..++..+... +.+. +.++.+||. |+...+.+.++|+.+++..+.+.|+.+|++.++    +.. +++
T Consensus       343 ~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~i  417 (462)
T TIGR01130       343 DDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FEV  417 (462)
T ss_pred             cCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CCc
Confidence              124567788888876543 4444 446667887 999999999999999971012999999998643    333 676


Q ss_pred             CCCCCcEEEEEccCCc--cccCCCCCChHHHHHHHHHHhcCcc
Q 015368          340 SGNAPRVIAYSARDAK--KYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~~--~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      .  ..|.++++..+.+  ...+.|..+.+.|.+|+++..+.++
T Consensus       418 ~--~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~  458 (462)
T TIGR01130       418 E--GFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL  458 (462)
T ss_pred             c--ccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence            3  4689998876332  2457888999999999999887655

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.52  E-value=6.1e-14  Score=111.42  Aligned_cols=71  Identities=20%  Similarity=0.256  Sum_probs=59.9

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--------CcEEEEEeCccc-------------------------Hh
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLE-------------------------KD  118 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--------~v~~~~v~~~~~-------------------------~~  118 (408)
                      ++|+++|+|||+||++|++++|.+.++++++++        ++.++.|+.+++                         ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            689999999999999999999999999887643        588898887643                         24


Q ss_pred             HHHHcCCCcCcEEEEEe-CCeEeEE
Q 015368          119 LAKEYNILAYPTLYLFV-AGVRQFQ  142 (408)
Q Consensus       119 ~~~~~~i~~~Pt~~~~~-~g~~~~~  142 (408)
                      ++++|++.++|++++++ +|+++.+
T Consensus       104 l~~~y~v~~iPt~vlId~~G~Vv~~  128 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDVLAA  128 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcEEee
Confidence            67889999999999999 8966543

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.50  E-value=7.9e-14  Score=106.28  Aligned_cols=106  Identities=17%  Similarity=0.128  Sum_probs=92.4

Q ss_pred             eEeeccccccccccCCccEEEEEeeCCCchHHHHHHHHHHHH---hcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKA---LKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~vA~~---~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      |+++|.+|+..++..+.|..++|...++.+.+...++++|++   ++++   +.|+++|++...   ..++.||++.+..
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgk---i~Fv~~d~~~~~---~~~~~fgl~~~~~   74 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGA---INFLTADGDKFR---HPLLHLGKTPADL   74 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCce---EEEEEEechHhh---hHHHHcCCCHhHC
Confidence            578999999999999997766555555578899999999999   9999   999999988754   3679999998789


Q ss_pred             cEEEEEcc-CCcccc-CCCCCChHHHHHHHHHHhcCc
Q 015368          345 RVIAYSAR-DAKKYV-LNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       345 p~i~i~~~-~~~~y~-~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                      |++++.+. ...+|. +.+.++.++|.+|++++++|+
T Consensus        75 P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk  111 (111)
T cd03072          75 PVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK  111 (111)
T ss_pred             CEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence            99999998 447998 888999999999999999996

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.50  E-value=7.3e-14  Score=107.92  Aligned_cols=86  Identities=24%  Similarity=0.483  Sum_probs=67.6

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHH---HHHHhcCCcEEEEEeCccc--------------------HhHHHHcCCCc
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAA---AAKMLKGEADLVMVDAYLE--------------------KDLAKEYNILA  127 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~---~~~~~~~~v~~~~v~~~~~--------------------~~~~~~~~i~~  127 (408)
                      .+++++++.||++||++|+.+.+.+..   +...+++++.++.++++..                    .++++.+||++
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g   82 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG   82 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence            367899999999999999999999985   4445555788888888753                    35889999999


Q ss_pred             CcEEEEEe-CCeEeEEeeCCCCHHHHHHHH
Q 015368          128 YPTLYLFV-AGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       128 ~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i  156 (408)
                      +||+++++ +|+.+.++.|..+.++|.+++
T Consensus        83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            99999998 898899999999999998875

...

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.49  E-value=3.1e-13  Score=104.58  Aligned_cols=97  Identities=13%  Similarity=0.100  Sum_probs=75.0

Q ss_pred             ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcccHhHHH--------HcCCCcCcE
Q 015368           62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAK--------EYNILAYPT  130 (408)
Q Consensus        62 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~--------~~~i~~~Pt  130 (408)
                      +++.+..+..++|+++|.|+|+||++|+.+.+..   .++++.+..++.++.||.++.+++++        .|++.|+|+
T Consensus         4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt   83 (124)
T cd02955           4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL   83 (124)
T ss_pred             CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence            3556777888999999999999999999998743   45777766689999999998887765        358999999


Q ss_pred             EEEEe-CCeEeEEeeCC-----CCHHHHHHHHHh
Q 015368          131 LYLFV-AGVRQFQFFGE-----RTRDVISAWVRE  158 (408)
Q Consensus       131 ~~~~~-~g~~~~~~~g~-----~~~~~l~~~i~~  158 (408)
                      +++++ +|+.+....+.     .+...+..++.+
T Consensus        84 ~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (124)
T cd02955          84 NVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK  117 (124)
T ss_pred             EEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence            99998 89777554432     344455555543

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.46  E-value=2.9e-13  Score=107.66  Aligned_cols=71  Identities=21%  Similarity=0.373  Sum_probs=59.8

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCccc------------------------HhHHHHc
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLE------------------------KDLAKEY  123 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~------------------------~~~~~~~  123 (408)
                      .++++++|+||++||++|+.++|.+.++++++++   ++.++.|+.+..                        ..+++.|
T Consensus        16 ~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (131)
T cd03009          16 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF   95 (131)
T ss_pred             hCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence            3679999999999999999999999999988864   577777776643                        3577899


Q ss_pred             CCCcCcEEEEEe-CCeEeE
Q 015368          124 NILAYPTLYLFV-AGVRQF  141 (408)
Q Consensus       124 ~i~~~Pt~~~~~-~g~~~~  141 (408)
                      ++.++|++++++ +|+++.
T Consensus        96 ~v~~~P~~~lid~~G~i~~  114 (131)
T cd03009          96 KIEGIPTLIILDADGEVVT  114 (131)
T ss_pred             CCCCCCEEEEECCCCCEEc
Confidence            999999999998 886543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=4.8e-13  Score=126.00  Aligned_cols=182  Identities=26%  Similarity=0.398  Sum_probs=130.8

Q ss_pred             CcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        57 ~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      .+..++..+|+..+ .....++|.||||||+||+.++|+|++++..++  ..+.++.+||+.+..+|+.++|+++||+.+
T Consensus       145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~  224 (383)
T KOG0191|consen  145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKL  224 (383)
T ss_pred             ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEE
Confidence            48889999998766 566789999999999999999999999999986  489999999999999999999999999999


Q ss_pred             EeCCeE-eEEeeCCCCHHHHHHHHHhHhCCC-----cccccChh----HH---HHH---hccCCeEEEEEecCCCCc---
Q 015368          134 FVAGVR-QFQFFGERTRDVISAWVREKMTLG-----TYSITTTD----EA---ERI---LTVESKLVLGFLHDLEGM---  194 (408)
Q Consensus       134 ~~~g~~-~~~~~g~~~~~~l~~~i~~~~~~~-----~~~i~~~~----~~---~~~---~~~~~~~vi~f~~~~~~~---  194 (408)
                      |.+|.. ...|.|.++.+.+..|+.......     +.++.+.+    .+   +.+   .......++.++.+|+..   
T Consensus       225 f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (383)
T KOG0191|consen  225 FPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCGHCGG  304 (383)
T ss_pred             ecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhhcccc
Confidence            998766 678889999999999999988663     33332221    00   111   112224566677777654   


Q ss_pred             CHHHHHHHhcc----CCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCC
Q 015368          195 ESEELAAASKL----HSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA  241 (408)
Q Consensus       195 ~~~~~~~~a~~----~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~  241 (408)
                      ..+.+...+..    ...+.+...   ....++.....+   ++|++.+++...
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  355 (383)
T KOG0191|consen  305 FAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAIVR---GYPTIKLYNYGK  355 (383)
T ss_pred             cchhHHHHHhccccccccceeeccccccccchhhHhhhh---cCceeEeecccc
Confidence            44455555532    233333332   222355555555   578888776543

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.45  E-value=6.4e-13  Score=99.31  Aligned_cols=66  Identities=32%  Similarity=0.549  Sum_probs=56.6

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCccc-------------------------HhHHHHcCC
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLE-------------------------KDLAKEYNI  125 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~~-------------------------~~~~~~~~i  125 (408)
                      ||+++|+|||+||++|+++.|.+.++++.++  +++.++.|+++++                         ..+.+.|+|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i   80 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI   80 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence            6899999999999999999999999999999  5899999998754                         246788999


Q ss_pred             CcCcEEEEEe-CCe
Q 015368          126 LAYPTLYLFV-AGV  138 (408)
Q Consensus       126 ~~~Pt~~~~~-~g~  138 (408)
                      .++|++++++ +|+
T Consensus        81 ~~iP~~~lld~~G~   94 (95)
T PF13905_consen   81 NGIPTLVLLDPDGK   94 (95)
T ss_dssp             TSSSEEEEEETTSB
T ss_pred             CcCCEEEEECCCCC
Confidence            9999999999 774

...

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.44  E-value=1.1e-12  Score=107.99  Aligned_cols=89  Identities=10%  Similarity=0.023  Sum_probs=70.6

Q ss_pred             hHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEE------EEEeCcc-----------------------
Q 015368           65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADL------VMVDAYL-----------------------  115 (408)
Q Consensus        65 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~------~~v~~~~-----------------------  115 (408)
                      .++.....||+.+|+|||+||++|+.++|.++++.+.   ++.+      ..||.++                       
T Consensus        51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~  127 (184)
T TIGR01626        51 PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA---KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWS  127 (184)
T ss_pred             eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc---CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcc
Confidence            3333344699999999999999999999999999654   4566      6677654                       


Q ss_pred             ------cHhHHHHcCCCcCcEE-EEEe-CCeEeEEeeCCCCHHHHHHHH
Q 015368          116 ------EKDLAKEYNILAYPTL-YLFV-AGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       116 ------~~~~~~~~~i~~~Pt~-~~~~-~g~~~~~~~g~~~~~~l~~~i  156 (408)
                            +..+...|++.++|+. ++++ +|++..++.|..+.+++.+.+
T Consensus       128 ~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~  176 (184)
T TIGR01626       128 QVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI  176 (184)
T ss_pred             eEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence                  2335678999999888 7887 999999999999998887743

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.44  E-value=4.1e-13  Score=106.81  Aligned_cols=70  Identities=23%  Similarity=0.393  Sum_probs=59.3

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccH-------------------------hHHHHc
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEK-------------------------DLAKEY  123 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~-------------------------~~~~~~  123 (408)
                      ++++++|+|||+||++|+.++|.++++++.+++   ++.++.|+++...                         .+++.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            679999999999999999999999999998875   5778888776532                         456779


Q ss_pred             CCCcCcEEEEEe-CCeEeE
Q 015368          124 NILAYPTLYLFV-AGVRQF  141 (408)
Q Consensus       124 ~i~~~Pt~~~~~-~g~~~~  141 (408)
                      +|.++|++++++ +|+++.
T Consensus        96 ~v~~iPt~~lid~~G~iv~  114 (132)
T cd02964          96 KVEGIPTLVVLKPDGDVVT  114 (132)
T ss_pred             CCCCCCEEEEECCCCCEEc
Confidence            999999999998 886543

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.44  E-value=8.4e-13  Score=93.54  Aligned_cols=73  Identities=16%  Similarity=0.229  Sum_probs=61.3

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCC-CCHHHHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAW  155 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~  155 (408)
                      -|.||++||++|+.+.|.+++++++++..+.+..||   +.+.+.+|++.++|++++  ||+.+  +.|. .+.+.+.++
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~   74 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEI   74 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHH
Confidence            378999999999999999999999998788888887   345588999999999998  88665  7775 455777776


Q ss_pred             H
Q 015368          156 V  156 (408)
Q Consensus       156 i  156 (408)
                      +
T Consensus        75 l   75 (76)
T TIGR00412        75 L   75 (76)
T ss_pred             h
Confidence            5

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PHA02125 thioredoxin-like protein

Probab=99.44  E-value=1.3e-12  Score=92.50  Aligned_cols=70  Identities=26%  Similarity=0.325  Sum_probs=58.4

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCC-CCHHHHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAW  155 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~  155 (408)
                      +++|||+||++|+.+.|.++++.      +.++.||++++.+++++|+|.++||++   +|+.+.++.|. .+..+|.+-
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~~   72 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKEK   72 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHHH
Confidence            78999999999999999997653      568999999999999999999999987   68777888885 344555543

>TIGR02740 TraF-like TraF-like protein

Probab=99.43  E-value=1.6e-12  Score=115.31  Aligned_cols=88  Identities=15%  Similarity=0.190  Sum_probs=74.2

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-----------cHhHHHHcCCCcCcEEEEEeC-CeE
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFVA-GVR  139 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-----------~~~~~~~~~i~~~Pt~~~~~~-g~~  139 (408)
                      .+++++|+|||+||++|+.++|.+++++++++  +.+..|++|.           +..++++|||.++|+++++++ |+.
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~  242 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ  242 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence            47899999999999999999999999999985  6777777664           357899999999999999994 544


Q ss_pred             e-EEeeCCCCHHHHHHHHHhHhC
Q 015368          140 Q-FQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       140 ~-~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      + ....|..+.++|.+.+.....
T Consensus       243 v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       243 FTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHhc
Confidence            4 456699999999999876653

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.43  E-value=1.3e-12  Score=112.47  Aligned_cols=104  Identities=13%  Similarity=0.117  Sum_probs=80.5

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHH-HHc
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLA-KEY  123 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~-~~~  123 (408)
                      .+.+++++.+...-.++++++|+|||+||++|+.++|.+.++++++++ ++.++.|+|+.       .    .+++ +++
T Consensus        83 ~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~  162 (236)
T PLN02399         83 TVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRF  162 (236)
T ss_pred             EEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence            344556665543333679999999999999999999999999999987 79999999841       1    1222 222


Q ss_pred             C----------------------------------CCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          124 N----------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       124 ~----------------------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +                                  +.+.|+.++++ +|+++.+|.|..+.++|.+.|++.+
T Consensus       163 g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL  234 (236)
T PLN02399        163 KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL  234 (236)
T ss_pred             CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence            1                                  22358999998 9999999999999999999998776

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.43  E-value=1.5e-12  Score=112.51  Aligned_cols=95  Identities=15%  Similarity=0.183  Sum_probs=78.2

Q ss_pred             EcChhhHHHHHcCCCc-EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368           60 SLNGKNFSEFMGKNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      .++.+..+.+....++ .++.||++||++|+.+.|.+++++... +++.+..+|.+++++++++|+|.++||++++++|+
T Consensus       119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~  197 (215)
T TIGR02187       119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE  197 (215)
T ss_pred             CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE
Confidence            3444444444433445 455599999999999999999999885 47999999999999999999999999999998884


Q ss_pred             EeEEeeCCCCHHHHHHHHHh
Q 015368          139 RQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       139 ~~~~~~g~~~~~~l~~~i~~  158 (408)
                      .   +.|..+.+++.+|+.+
T Consensus       198 ~---~~G~~~~~~l~~~l~~  214 (215)
T TIGR02187       198 E---FVGAYPEEQFLEYILS  214 (215)
T ss_pred             E---EECCCCHHHHHHHHHh
Confidence            2   8899999999999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.42  E-value=1.1e-12  Score=128.67  Aligned_cols=97  Identities=25%  Similarity=0.432  Sum_probs=81.8

Q ss_pred             ChhhHHHHH----cCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCccc----HhHHHHcCCCcCcE
Q 015368           62 NGKNFSEFM----GKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPT  130 (408)
Q Consensus        62 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt  130 (408)
                      +.+++++.+    .++|+++|+|||+||++|+.+.+..   .++.+.++ ++.++++|++++    .+++++|++.++||
T Consensus       459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt  537 (571)
T PRK00293        459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPT  537 (571)
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCE
Confidence            456666554    4579999999999999999998875   67777776 689999999853    68899999999999


Q ss_pred             EEEEe-CCeE--eEEeeCCCCHHHHHHHHHhH
Q 015368          131 LYLFV-AGVR--QFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       131 ~~~~~-~g~~--~~~~~g~~~~~~l~~~i~~~  159 (408)
                      +++|+ +|++  ..++.|..+.+++.+++++.
T Consensus       538 ~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        538 ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             EEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence            99998 8876  46889999999999999864

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.41  E-value=1.5e-12  Score=110.48  Aligned_cols=104  Identities=15%  Similarity=0.143  Sum_probs=78.6

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHHHHcCC
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKEYNI  125 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~~~i  125 (408)
                      +..++++.+...-.++++++|+|||+||++|++++|.+.++++++++ ++.++.|+|++       +    ...++++++
T Consensus        24 l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~  103 (199)
T PTZ00056         24 VKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKI  103 (199)
T ss_pred             EECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCC
Confidence            34455554443333689999999999999999999999999999987 79999998842       1    233444443


Q ss_pred             C------------------------------------cCc---EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          126 L------------------------------------AYP---TLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       126 ~------------------------------------~~P---t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      .                                    ++|   +.++++ +|+++.++.|..+.+.+.+.|.+.+.
T Consensus       104 ~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~  179 (199)
T PTZ00056        104 KYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG  179 (199)
T ss_pred             CceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            1                                    122   677887 99999999999999999999988774

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.39  E-value=2.5e-12  Score=134.57  Aligned_cols=89  Identities=21%  Similarity=0.294  Sum_probs=79.0

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeC---------------------------cccHhHHHHc
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA---------------------------YLEKDLAKEY  123 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~---------------------------~~~~~~~~~~  123 (408)
                      ++|+++|+|||+||++|+.++|.+++++++|++ ++.++.|.+                           |.+..+.++|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            689999999999999999999999999999987 588887742                           2244677899


Q ss_pred             CCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          124 NILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       124 ~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|.++|++++++ +|+++.++.|....+.+.+++...+
T Consensus       499 ~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l  536 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAAL  536 (1057)
T ss_pred             CCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHH
Confidence            999999999996 9999999999999999999998886

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.39  E-value=2.7e-12  Score=100.90  Aligned_cols=94  Identities=17%  Similarity=0.252  Sum_probs=72.3

Q ss_pred             EEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEe---------------------CcccH
Q 015368           59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD---------------------AYLEK  117 (408)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~---------------------~~~~~  117 (408)
                      ..++++.+......+++++|+||++||++|+.+.|.+.++++.+.  +..+.++                     ++.+.
T Consensus         6 ~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   83 (123)
T cd03011           6 TTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP--VVSVALRSGDDGAVARFMQKKGYGFPVINDPDG   83 (123)
T ss_pred             ecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC--EEEEEccCCCHHHHHHHHHHcCCCccEEECCCc
Confidence            345555565555567999999999999999999999999988742  2222221                     23456


Q ss_pred             hHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHH
Q 015368          118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA  154 (408)
Q Consensus       118 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~  154 (408)
                      .++++|+|.++|+++++++|.+..++.|..+.+.|.+
T Consensus        84 ~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~  120 (123)
T cd03011          84 VISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL  120 (123)
T ss_pred             HHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence            7999999999999999984438888999999998865

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.39  E-value=1.8e-12  Score=100.47  Aligned_cols=85  Identities=33%  Similarity=0.469  Sum_probs=71.7

Q ss_pred             cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc-----------------------
Q 015368           61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-----------------------  116 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~-----------------------  116 (408)
                      ++++.+...-..+++++|.||++||++|+...+.+.++.++++. ++.++.|+++.+                       
T Consensus         7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~   86 (116)
T cd02966           7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPD   86 (116)
T ss_pred             CCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCc
Confidence            33344443333478999999999999999999999999999974 899999999886                       


Q ss_pred             HhHHHHcCCCcCcEEEEEe-CCeEeEEeeC
Q 015368          117 KDLAKEYNILAYPTLYLFV-AGVRQFQFFG  145 (408)
Q Consensus       117 ~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g  145 (408)
                      ..+++.|++.++|++++++ +|+++.++.|
T Consensus        87 ~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          87 GELAKAYGVRGLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             chHHHhcCcCccceEEEECCCCcEEEEecC
Confidence            7789999999999999998 8988888776

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.37  E-value=2.9e-12  Score=104.04  Aligned_cols=88  Identities=28%  Similarity=0.395  Sum_probs=72.9

Q ss_pred             cChhhHHHHHcCCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc---------------------H
Q 015368           61 LNGKNFSEFMGKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------K  117 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~---------------------~  117 (408)
                      .+++.+...-.++|+++|.||++ ||++|+.++|.+.++++.+++ ++.++.|..+.+                     .
T Consensus        16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~   95 (146)
T PF08534_consen   16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDG   95 (146)
T ss_dssp             TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTS
T ss_pred             CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHH
Confidence            55555543335789999999999 999999999999999999876 688888876543                     4


Q ss_pred             hHHHHcCCC---------cCcEEEEEe-CCeEeEEeeCCCC
Q 015368          118 DLAKEYNIL---------AYPTLYLFV-AGVRQFQFFGERT  148 (408)
Q Consensus       118 ~~~~~~~i~---------~~Pt~~~~~-~g~~~~~~~g~~~  148 (408)
                      .+.+.|++.         ++|++++++ +|+++..+.|...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen   96 ALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             HHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             HHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence            578889988         999999998 9999999988766

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.37  E-value=3.9e-12  Score=107.44  Aligned_cols=98  Identities=19%  Similarity=0.317  Sum_probs=70.0

Q ss_pred             cEEcChhhHHH--HHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--------------------c
Q 015368           58 VVSLNGKNFSE--FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--------------------L  115 (408)
Q Consensus        58 ~~~l~~~~~~~--~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--------------------~  115 (408)
                      +.+++++++..  ...++++++|+||++||++|+.++|.+.++++..+  +.++.|+.+                    .
T Consensus        57 l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~  134 (189)
T TIGR02661        57 LPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVV  134 (189)
T ss_pred             ecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeec
Confidence            44455554442  33467899999999999999999999999987754  444444422                    1


Q ss_pred             cHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCC-CCHHHHHHHHHhH
Q 015368          116 EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGE-RTRDVISAWVREK  159 (408)
Q Consensus       116 ~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~-~~~~~l~~~i~~~  159 (408)
                      ..++++.|++.++|+.++++ +|++..+  |. ...+.+.+.++..
T Consensus       135 ~~~i~~~y~v~~~P~~~lID~~G~I~~~--g~~~~~~~le~ll~~l  178 (189)
T TIGR02661       135 SAEIGMAFQVGKIPYGVLLDQDGKIRAK--GLTNTREHLESLLEAD  178 (189)
T ss_pred             hhHHHHhccCCccceEEEECCCCeEEEc--cCCCCHHHHHHHHHHH
Confidence            34677899999999999998 8866543  44 4567777777543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.37  E-value=3.3e-12  Score=100.76  Aligned_cols=75  Identities=20%  Similarity=0.320  Sum_probs=64.9

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc---------------------------ccHhHHHHc
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------------LEKDLAKEY  123 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~---------------------------~~~~~~~~~  123 (408)
                      ++++++|+||++||++|+.++|.++++++++++ ++.++.|+.+                           .+..+++.|
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~  101 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY  101 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence            679999999999999999999999999999986 7888888652                           123467789


Q ss_pred             CCCcCcEEEEEe-CCeEeEEeeCC
Q 015368          124 NILAYPTLYLFV-AGVRQFQFFGE  146 (408)
Q Consensus       124 ~i~~~Pt~~~~~-~g~~~~~~~g~  146 (408)
                      ++.++|++++++ +|+++.++.|+
T Consensus       102 ~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         102 GNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CCCcCCeEEEECCCCcEEEEEecC
Confidence            999999999998 89888888885

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PLN02412 probable glutathione peroxidase

Probab=99.34  E-value=9.4e-12  Score=102.85  Aligned_cols=103  Identities=12%  Similarity=0.118  Sum_probs=78.7

Q ss_pred             EEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc--------cHhH----HHHcC-
Q 015368           59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------EKDL----AKEYN-  124 (408)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------~~~~----~~~~~-  124 (408)
                      ..++++.+...-..+++++|+|||+||++|+.++|.+.++++++++ ++.++.|+++.        ..++    +++++ 
T Consensus        15 ~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (167)
T PLN02412         15 KDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKA   94 (167)
T ss_pred             ECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCC
Confidence            3444544432223679999999999999999999999999999987 79999998742        1121    12211 


Q ss_pred             ---------------------------------CCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          125 ---------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       125 ---------------------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                                                       +.+.|+.++++ +|+++.++.|..+.+++.+.|++.+.
T Consensus        95 ~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~  165 (167)
T PLN02412         95 EFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG  165 (167)
T ss_pred             CCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                             34468999997 99999999999999999999987763

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.33  E-value=4.6e-12  Score=98.17  Aligned_cols=69  Identities=25%  Similarity=0.330  Sum_probs=54.4

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc---c-----------------cHhHHHHcCCCcCcEE
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY---L-----------------EKDLAKEYNILAYPTL  131 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~---~-----------------~~~~~~~~~i~~~Pt~  131 (408)
                      ++++++|.||++||++|++++|.++++++.+++++.++.+.-+   +                 +.++.++|++.++|++
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~   99 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA   99 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence            4789999999999999999999999999988777777766311   1                 1345667888888999


Q ss_pred             EEEe-CCeEe
Q 015368          132 YLFV-AGVRQ  140 (408)
Q Consensus       132 ~~~~-~g~~~  140 (408)
                      ++++ +|++.
T Consensus       100 ~vid~~G~v~  109 (114)
T cd02967         100 VLLDEAGVIA  109 (114)
T ss_pred             EEECCCCeEE
Confidence            9998 77543

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.32  E-value=1.9e-11  Score=95.86  Aligned_cols=110  Identities=16%  Similarity=0.237  Sum_probs=87.1

Q ss_pred             CceEeeccccc-cccccCCccEEEEEeeCC------CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhcc
Q 015368          266 PLVVTLTIHNA-QFVFQDPRKQLWLFAPAY------GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFG  338 (408)
Q Consensus       266 p~v~~lt~~~~-~~~~~~~~~~~i~f~~~~------~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~  338 (408)
                      |-+.+++.++. ...+....-.++.|.+..      +.+++...++++|++|+++|  +.|+|+|++.+.   .+++.||
T Consensus         2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~--i~Fv~vd~~~~~---~~~~~fg   76 (130)
T cd02983           2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP--WGWLWTEAGAQL---DLEEALN   76 (130)
T ss_pred             CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc--EEEEEEeCcccH---HHHHHcC
Confidence            44667776654 445544445566666641      25688999999999999986  899999988753   5889999


Q ss_pred             CCCCCCcEEEEEccCCcccc-CCCCCChHHHHHHHHHHhcCcc
Q 015368          339 VSGNAPRVIAYSARDAKKYV-LNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       339 i~~~~~p~i~i~~~~~~~y~-~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      ++....|++++++.++.+|. +.++++.+.|.+|++++++|++
T Consensus        77 l~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          77 IGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             CCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence            98777899999998444888 8899999999999999999999

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.31  E-value=1.7e-11  Score=100.17  Aligned_cols=99  Identities=14%  Similarity=0.146  Sum_probs=74.9

Q ss_pred             cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc--------cc---HhHHHH-cCC--
Q 015368           61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY--------LE---KDLAKE-YNI--  125 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~--------~~---~~~~~~-~~i--  125 (408)
                      ++++.+...-.++|+++|.|||+||++|+.++|.+.++++++++ ++.++.|+|.        ..   .+.+++ +++  
T Consensus        10 ~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~f   89 (153)
T TIGR02540        10 ARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTF   89 (153)
T ss_pred             CCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCC
Confidence            44444443233688999999999999999999999999999987 8999999972        11   222322 221  


Q ss_pred             ------------------------CcCcE----EEEEe-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          126 ------------------------LAYPT----LYLFV-AGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       126 ------------------------~~~Pt----~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                                              .++|+    .++++ +|+++.++.|..+.++|.+.|++.
T Consensus        90 p~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l  152 (153)
T TIGR02540        90 PMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL  152 (153)
T ss_pred             CccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence                                    13686    78887 999999999999999998888764

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.30  E-value=6.9e-11  Score=91.24  Aligned_cols=106  Identities=7%  Similarity=0.143  Sum_probs=89.6

Q ss_pred             EEcChhhHHHHHcCCCcEEEEEecC--CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           59 VSLNGKNFSEFMGKNRNVMVMFYAN--WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~v~f~a~--wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      ..++..+++..+..+...+|.|-.+  -++.+....=.+.+++++|.+ ++.+++||++++++++.+|||.++||+++|+
T Consensus        20 ~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~Fk   99 (132)
T PRK11509         20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFT   99 (132)
T ss_pred             CccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEE
Confidence            3466678888887766666655432  356677777789999999985 6999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHhCCCc
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~~~~~  164 (408)
                      +|+.+.+..|.++.+++.+||.+.+..+.
T Consensus       100 dGk~v~~i~G~~~k~~l~~~I~~~L~~~~  128 (132)
T PRK11509        100 GGNYRGVLNGIHPWAELINLMRGLVEPQQ  128 (132)
T ss_pred             CCEEEEEEeCcCCHHHHHHHHHHHhcCcC
Confidence            99999999999999999999999987654

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.29  E-value=1.1e-11  Score=101.09  Aligned_cols=83  Identities=14%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHHHH-cC--------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKE-YN--------------  124 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~-~~--------------  124 (408)
                      .+|+++|+|||+||+ |+.++|.++++++++++ ++.++.|+++.       .    .+++++ ++              
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~   99 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE   99 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence            589999999999999 99999999999999976 79999998742       1    123332 22              


Q ss_pred             ---------CCcCc-----------EEEEEe-CCeEeEEeeCCCCHHHHHHH
Q 015368          125 ---------ILAYP-----------TLYLFV-AGVRQFQFFGERTRDVISAW  155 (408)
Q Consensus       125 ---------i~~~P-----------t~~~~~-~g~~~~~~~g~~~~~~l~~~  155 (408)
                               +.++|           +.++++ +|+++.++.|..+.+++.+.
T Consensus       100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~  151 (152)
T cd00340         100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD  151 (152)
T ss_pred             CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence                     23456           688887 99999999999998887653

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.28  E-value=6.1e-10  Score=94.16  Aligned_cols=167  Identities=20%  Similarity=0.314  Sum_probs=128.1

Q ss_pred             hhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC-eEeEEeeCC-CCHHHHHHHHHhHhCCCcccc
Q 015368           90 KLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQFFGE-RTRDVISAWVREKMTLGTYSI  167 (408)
Q Consensus        90 ~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~-~~~~~l~~~i~~~~~~~~~~i  167 (408)
                      .+...|.++|+.+.+.+.|+.+.   ++++++++++.. |++++|+++ +....|.|. .+.+.|.+||....-|.+.++
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~   82 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPEL   82 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEE
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccccccc
Confidence            45678999999999899999988   778999999998 999999963 467889998 899999999999999999998


Q ss_pred             cChhHHHHHhccCCe-EEEEEecCCCCc---CHHHHHHHh-ccCCceeEEEec---CHhHHhhcCCCCCCCCCeEEEeec
Q 015368          168 TTTDEAERILTVESK-LVLGFLHDLEGM---ESEELAAAS-KLHSDVNFYQTT---SADVAEFFHIHPKSKRPALIFLHL  239 (408)
Q Consensus       168 ~~~~~~~~~~~~~~~-~vi~f~~~~~~~---~~~~~~~~a-~~~~~~~f~~~~---~~~l~~~~~i~~~~~~p~l~~~~~  239 (408)
                      + .+.+..+...... ++++|.......   ....+..+| +.++++.|..+.   .+.+.+.++++. ...|+++++..
T Consensus        83 t-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~-~~~P~~vi~~~  160 (184)
T PF13848_consen   83 T-PENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDE-DDLPALVIFDS  160 (184)
T ss_dssp             S-TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTT-SSSSEEEEEET
T ss_pred             c-hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCC-ccCCEEEEEEC
Confidence            5 5788888887765 454444332211   334455666 778888888762   457888999984 35899999996


Q ss_pred             CCCcc-cccCCcCCHHHHHHHHhc
Q 015368          240 EAGKA-TPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       240 ~~~~~-~~y~g~~~~~~i~~fi~~  262 (408)
                      ..+.. ..+.++++.++|.+|+++
T Consensus       161 ~~~~~~~~~~~~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  161 NKGKYYYLPEGEITPESIEKFLND  184 (184)
T ss_dssp             TTSEEEE--SSCGCHHHHHHHHHH
T ss_pred             CCCcEEcCCCCCCCHHHHHHHhcC
Confidence            55443 334788999999999963

...

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.25  E-value=1.2e-10  Score=89.95  Aligned_cols=94  Identities=13%  Similarity=0.168  Sum_probs=79.1

Q ss_pred             HHHHcCCCcEEEEEecCCChhHHhhhHH-H--HHHHHHhcCCcEEEEEeCc--ccHhHHHHcCCCcCcEEEEEe--CCeE
Q 015368           67 SEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV--AGVR  139 (408)
Q Consensus        67 ~~~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~--~g~~  139 (408)
                      +.+..++|+++|+|+++||++|+.+... |  .++.+.++.++.+..+|.+  +..++++.|++.++|++++++  +|+.
T Consensus        11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~   90 (114)
T cd02958          11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV   90 (114)
T ss_pred             HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence            3455678999999999999999999764 3  5566667667888888886  456789999999999999998  5888


Q ss_pred             eEEeeCCCCHHHHHHHHHhHh
Q 015368          140 QFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       140 ~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +.+..|..+.+++...+++..
T Consensus        91 l~~~~G~~~~~~f~~~L~~~~  111 (114)
T cd02958          91 LKVWSGNITPEDLLSQLIEFL  111 (114)
T ss_pred             eEEEcCCCCHHHHHHHHHHHH
Confidence            999999999999998887754

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=99.25  E-value=2.4e-11  Score=92.34  Aligned_cols=101  Identities=22%  Similarity=0.258  Sum_probs=81.4

Q ss_pred             eEeeccccccccccCCccEEEEEeeC------CCchHHHHHHHHHHHHhc-CCcceEEEEEEEcCCcccccchhhhccCC
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWLFAPA------YGSDKVILTFEEVAKALK-GKVNMLLHVYVEMNSEGVGRRVSQEFGVS  340 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~f~~~------~~~~~~~~~~~~vA~~~~-~~~~~i~f~~vd~~~~~~~~~l~~~~~i~  340 (408)
                      |.++|.+|...++..  |++++|.+.      ++.+++...++++|++++ ++   +.|+++|.++..   ..++.||++
T Consensus         1 v~~~~~en~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gk---i~Fv~~D~~~~~---~~l~~fgl~   72 (111)
T cd03073           1 VGHRTKDNRAQFTKK--PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRK---LNFAVADKEDFS---HELEEFGLD   72 (111)
T ss_pred             CCeeccchHHHhccC--CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCe---EEEEEEcHHHHH---HHHHHcCCC
Confidence            356788888888655  445555422      226789999999999999 79   999999987643   467999998


Q ss_pred             CCC--CcEEEEEccCCccccCCCCC-ChHHHHHHHHHHh
Q 015368          341 GNA--PRVIAYSARDAKKYVLNGEL-TLSSIKSFGEEFL  376 (408)
Q Consensus       341 ~~~--~p~i~i~~~~~~~y~~~~~~-~~~~i~~Fi~~~~  376 (408)
                      .+.  .|++++.+..++||.+++++ +.++|.+|+++++
T Consensus        73 ~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f~  111 (111)
T cd03073          73 FSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDFF  111 (111)
T ss_pred             cccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence            766  89999998756899998889 9999999999874

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.21  E-value=4.2e-11  Score=82.94  Aligned_cols=60  Identities=22%  Similarity=0.330  Sum_probs=53.2

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      -++.||++||++|+.+.+.++++++.. .++.+..+|.++++++++++|+.++|++++  +|+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~   61 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALN-PNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK   61 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhC-CceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence            467899999999999999999998764 379999999999999999999999999865  553

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=99.17  E-value=8.6e-11  Score=90.71  Aligned_cols=81  Identities=12%  Similarity=0.091  Sum_probs=56.3

Q ss_pred             HHHHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe-CCeEeE
Q 015368           66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGVRQF  141 (408)
Q Consensus        66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~  141 (408)
                      +..+..++|+++|+|+++||++|+.+...+   .++.+..+.++..+.++.+....-....+ .++||++|++ +|+++.
T Consensus        16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~   94 (130)
T cd02960          16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRA   94 (130)
T ss_pred             HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcc
Confidence            334457899999999999999999998875   34555554466666666542211111234 6899999998 887777


Q ss_pred             EeeCCC
Q 015368          142 QFFGER  147 (408)
Q Consensus       142 ~~~g~~  147 (408)
                      +..|.+
T Consensus        95 ~i~Gy~  100 (130)
T cd02960          95 DITGRY  100 (130)
T ss_pred             cccccc
Confidence            776643

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.17  E-value=2.7e-10  Score=82.99  Aligned_cols=77  Identities=19%  Similarity=0.232  Sum_probs=64.9

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHH
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV  151 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~  151 (408)
                      .+..-+..|+++||++|....+.++++++.+. ++.+..+|.++.++++++|||.++|++++  +|+...  .|..+.++
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e   85 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP-NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEE   85 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHH
Confidence            44567888999999999999999999998875 79999999999999999999999999965  786544  58666665


Q ss_pred             HH
Q 015368          152 IS  153 (408)
Q Consensus       152 l~  153 (408)
                      +.
T Consensus        86 ~~   87 (89)
T cd03026          86 IL   87 (89)
T ss_pred             Hh
Confidence            43

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.17  E-value=1.6e-10  Score=97.09  Aligned_cols=103  Identities=12%  Similarity=0.114  Sum_probs=74.5

Q ss_pred             cEEcChhhHHHHHcCCCcE-EEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c-Hh---H-HHH-
Q 015368           58 VVSLNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E-KD---L-AKE-  122 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~-~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~-~~---~-~~~-  122 (408)
                      +..++++.+...-..+|++ ++.+||+||++|++++|.++++++++++ ++.++.|+|+.       + .+   . .++ 
T Consensus        25 l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~  104 (183)
T PTZ00256         25 AIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKF  104 (183)
T ss_pred             eEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence            3345555444322357765 4566999999999999999999999987 79999998742       0 11   1 112 


Q ss_pred             -----------------------------------cCCCcCcE---EEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          123 -----------------------------------YNILAYPT---LYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       123 -----------------------------------~~i~~~Pt---~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                                         +++.++|+   .++++ +|+++.++.|..+.+.+.+.|.+.+
T Consensus       105 ~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll  181 (183)
T PTZ00256        105 NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL  181 (183)
T ss_pred             CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence                                               13446794   57777 9999999999999999988888765

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.15  E-value=5.3e-10  Score=93.19  Aligned_cols=93  Identities=19%  Similarity=0.282  Sum_probs=74.8

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-----------------------------cHhHHH
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-----------------------------~~~~~~  121 (408)
                      ++++++|+||++||+.|...++.+.++++++++ ++.++.|+++.                             +..+++
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  103 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK  103 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence            678999999999999999999999999999975 89999998753                             124567


Q ss_pred             HcCCCcCcEEEEEe-CCeEeEEe---------eCCCCHHHHHHHHHhHhCCCc
Q 015368          122 EYNILAYPTLYLFV-AGVRQFQF---------FGERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       122 ~~~i~~~Pt~~~~~-~g~~~~~~---------~g~~~~~~l~~~i~~~~~~~~  164 (408)
                      .|++.+.|++++++ +|+++...         .+..+.+.+.+-|...+...-
T Consensus       104 ~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~  156 (171)
T cd02969         104 AYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP  156 (171)
T ss_pred             HcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence            89999999999998 88766442         123466888888888775443

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=99.14  E-value=2.6e-10  Score=107.75  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=82.2

Q ss_pred             EEcChh-hHHHHHcCCC--cEEEEEecCCChhHHhhhHHHH-HHHHHhcC-CcEEEEEeCccc----HhHHHHcCCCcCc
Q 015368           59 VSLNGK-NFSEFMGKNR--NVMVMFYANWCYWSKKLAPEFA-AAAKMLKG-EADLVMVDAYLE----KDLAKEYNILAYP  129 (408)
Q Consensus        59 ~~l~~~-~~~~~~~~~~--~~~v~f~a~wC~~C~~~~p~~~-~~~~~~~~-~v~~~~v~~~~~----~~~~~~~~i~~~P  129 (408)
                      ..++.. ++++.+.+++  ||+|+|||+||-.||.+.+..- +.....+- ++...++|.+++    .++-++||+-|.|
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P  536 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP  536 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence            344444 7888886666  9999999999999999988753 22222222 899999999865    4677899999999


Q ss_pred             EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          130 TLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       130 t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++++|+ +|++.....|.++++.+.+++++..
T Consensus       537 ~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~  568 (569)
T COG4232         537 TYLFFGPQGSEPEILTGFLTADAFLEHLERAA  568 (569)
T ss_pred             EEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence            999999 8877777999999999999998753

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.10  E-value=1e-09  Score=82.16  Aligned_cols=95  Identities=20%  Similarity=0.403  Sum_probs=84.5

Q ss_pred             ccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCc
Q 015368          165 YSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGK  243 (408)
Q Consensus       165 ~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~  243 (408)
                      ..+.+.++++.++..++.++|+||.+.+++.+..|..+| .++..+.|+.+.+..+.+++++.    .|++++|++.+..
T Consensus         2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~~~   77 (97)
T cd02981           2 KELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK----PGSVVLFKPFEEE   77 (97)
T ss_pred             eecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC----CCceEEeCCcccC
Confidence            467888999999999999999999998889999999988 67779999999999999998876    4899999987778


Q ss_pred             ccccCCcCCHHHHHHHHhcC
Q 015368          244 ATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       244 ~~~y~g~~~~~~i~~fi~~~  263 (408)
                      +..|+|+++.++|.+||..+
T Consensus        78 ~~~y~g~~~~~~l~~fi~~~   97 (97)
T cd02981          78 PVEYDGEFTEESLVEFIKDN   97 (97)
T ss_pred             CccCCCCCCHHHHHHHHHhC
Confidence            88999999999999999754

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>smart00594 UAS UAS domain

Probab=99.08  E-value=2.1e-09  Score=83.88  Aligned_cols=89  Identities=11%  Similarity=0.095  Sum_probs=72.3

Q ss_pred             HHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcc--cHhHHHHcCCCcCcEEEEEe-CC----
Q 015368           68 EFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFV-AG----  137 (408)
Q Consensus        68 ~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~-~g----  137 (408)
                      .+..++|+++|+|+++||++|+.+....   .++.+.++.++.+..+|.+.  ..+++++|++.++|+++++. +|    
T Consensus        22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~  101 (122)
T smart00594       22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRV  101 (122)
T ss_pred             HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCcee
Confidence            4446789999999999999999987764   55666666678887888654  46789999999999999998 55    


Q ss_pred             -eEeEEeeCCCCHHHHHHHH
Q 015368          138 -VRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       138 -~~~~~~~g~~~~~~l~~~i  156 (408)
                       +.+.+..|..+.+++..++
T Consensus       102 ~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594      102 IEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEEeccccCCCCHHHHHHhh
Confidence             3467889999999998775

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=5.1e-09  Score=80.90  Aligned_cols=110  Identities=15%  Similarity=0.260  Sum_probs=84.9

Q ss_pred             HHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcc----------------cHhHHHHcCCCcC
Q 015368           68 EFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL----------------EKDLAKEYNILAY  128 (408)
Q Consensus        68 ~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~----------------~~~~~~~~~i~~~  128 (408)
                      .+..+++..++.|-++.|+.|.++...+   .++.+.+.+++.++.++...                .++++++|+++++
T Consensus        37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst  116 (182)
T COG2143          37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST  116 (182)
T ss_pred             hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence            3445789999999999999999998876   56677777788888888642                3589999999999


Q ss_pred             cEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHh
Q 015368          129 PTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL  177 (408)
Q Consensus       129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~  177 (408)
                      |++++|+ +|+.+...+|.+..+++...++-..........+.+++...+
T Consensus       117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ykd~~~dedf~kk~  166 (182)
T COG2143         117 PTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYKDTKTDEDFTKKL  166 (182)
T ss_pred             ceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence            9999999 888899999999999998777544433333333344444444

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=5.9e-10  Score=90.91  Aligned_cols=90  Identities=20%  Similarity=0.231  Sum_probs=77.1

Q ss_pred             CCcEEc-ChhhHHHHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCC-----
Q 015368           56 KDVVSL-NGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL-----  126 (408)
Q Consensus        56 ~~~~~l-~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~-----  126 (408)
                      ..+..+ +++.++..+.+  .+.|+|.|+|.|.+.|+.+.|.|.+++.+|.. .+.|++||+...++.+.+|+|+     
T Consensus       124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~s  203 (265)
T KOG0914|consen  124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGS  203 (265)
T ss_pred             hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCccc
Confidence            456666 56666666644  45899999999999999999999999999987 8999999999999999999886     


Q ss_pred             -cCcEEEEEeCCeEeEEeeC
Q 015368          127 -AYPTLYLFVAGVRQFQFFG  145 (408)
Q Consensus       127 -~~Pt~~~~~~g~~~~~~~g  145 (408)
                       ..||+++|.+|+++.+...
T Consensus       204 rQLPT~ilFq~gkE~~RrP~  223 (265)
T KOG0914|consen  204 RQLPTYILFQKGKEVSRRPD  223 (265)
T ss_pred             ccCCeEEEEccchhhhcCcc
Confidence             5899999999988877653

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.07  E-value=1.1e-09  Score=88.16  Aligned_cols=85  Identities=18%  Similarity=0.186  Sum_probs=71.0

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------cHhHHHHcCCCcC
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNILAY  128 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------~~~~~~~~~i~~~  128 (408)
                      .+++++|.|| +.||+.|...+|.+.++++.+++ ++.++.|..+.                     +..+++.||+...
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  101 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE  101 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence            4899999999 58999999999999999998875 78888887643                     3457788999888


Q ss_pred             ---------cEEEEEe-CCeEeEEeeCCCCHHHHHHHH
Q 015368          129 ---------PTLYLFV-AGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       129 ---------Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i  156 (408)
                               |++++++ +|++...+.|....+.+.+-+
T Consensus       102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~  139 (140)
T cd03017         102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL  139 (140)
T ss_pred             cccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence                     9999998 899999999988777766543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.07  E-value=7.4e-10  Score=83.99  Aligned_cols=94  Identities=36%  Similarity=0.435  Sum_probs=75.4

Q ss_pred             cccccCCccEEEEEeeC-C-CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-C
Q 015368          277 QFVFQDPRKQLWLFAPA-Y-GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-D  353 (408)
Q Consensus       277 ~~~~~~~~~~~i~f~~~-~-~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~  353 (408)
                      ..+...+.|++++|... + +++.+.+.++++|++++++   +.|+++|++..   +.+++.+|+.....|.+++++. +
T Consensus         6 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~---~~~~~~~~i~~~~~P~~~~~~~~~   79 (103)
T cd02982           6 FNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF---GRHLEYFGLKEEDLPVIAIINLSD   79 (103)
T ss_pred             hhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh---HHHHHHcCCChhhCCEEEEEeccc
Confidence            33333355788877754 4 3899999999999999999   99999998763   4788999997556899999887 5


Q ss_pred             CccccCCC-CCChHHHHHHHHHHh
Q 015368          354 AKKYVLNG-ELTLSSIKSFGEEFL  376 (408)
Q Consensus       354 ~~~y~~~~-~~~~~~i~~Fi~~~~  376 (408)
                      +++|.+.+ .++.++|.+|+++++
T Consensus        80 ~~k~~~~~~~~~~~~l~~fi~~~~  103 (103)
T cd02982          80 GKKYLMPEEELTAESLEEFVEDFL  103 (103)
T ss_pred             ccccCCCccccCHHHHHHHHHhhC
Confidence            77888765 569999999999874

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=99.06  E-value=5.7e-10  Score=80.50  Aligned_cols=69  Identities=30%  Similarity=0.391  Sum_probs=54.7

Q ss_pred             HHHHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      +..+..++|+++|+|+|+||++|+.+...+   .++.+.+.+++.++.||.++.....+..+ .++|++++++
T Consensus        10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld   81 (82)
T PF13899_consen   10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD   81 (82)
T ss_dssp             HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred             HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence            445557899999999999999999999887   45566566689999999987665443222 7799999986

...

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.05  E-value=2.5e-09  Score=80.59  Aligned_cols=97  Identities=13%  Similarity=0.265  Sum_probs=85.5

Q ss_pred             cccccChhHHHHHhc-cCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCC
Q 015368          164 TYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA  241 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~  241 (408)
                      ++.|.+.++++.++. .++..+|+||.+..++.+..|..+| .++.++.|+.+.+..+...+++.    .|+++++++.+
T Consensus         2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~----~~~i~l~~~~~   77 (102)
T cd03066           2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLK----MNEVDFYEPFM   77 (102)
T ss_pred             ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCC----CCcEEEeCCCC
Confidence            567889999999999 8999999999998888999999988 67799999999999999999886    59999998766


Q ss_pred             Cccccc-CCcCCHHHHHHHHhcCC
Q 015368          242 GKATPF-RHQFTRLAIANFVTHTK  264 (408)
Q Consensus       242 ~~~~~y-~g~~~~~~i~~fi~~~~  264 (408)
                      .....| .|..+.+.|.+||..+.
T Consensus        78 e~~~~y~~g~~~~~~l~~fi~~~~  101 (102)
T cd03066          78 EEPVTIPDKPYSEEELVDFVEEHK  101 (102)
T ss_pred             CCCcccCCCCCCHHHHHHHHHHhc
Confidence            677789 78889999999998764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.04  E-value=2.4e-09  Score=88.53  Aligned_cols=84  Identities=11%  Similarity=0.150  Sum_probs=66.4

Q ss_pred             CCCcEEEEEecCC-ChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-----------------------cHhHHHHcCCCc
Q 015368           72 KNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------------------EKDLAKEYNILA  127 (408)
Q Consensus        72 ~~~~~~v~f~a~w-C~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-----------------------~~~~~~~~~i~~  127 (408)
                      .+|+++|+||++| |++|..++|.+.++++++. ++.++.|++|.                       ...+++.||+.+
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~  121 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAI  121 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCee
Confidence            5789999999999 9999999999999999985 78888887653                       236788899987


Q ss_pred             Cc---------EEEEEe-CCeEeEEeeCC-----CCHHHHHHHH
Q 015368          128 YP---------TLYLFV-AGVRQFQFFGE-----RTRDVISAWV  156 (408)
Q Consensus       128 ~P---------t~~~~~-~g~~~~~~~g~-----~~~~~l~~~i  156 (408)
                      .|         ++++++ +|++...+.+.     .+.+.+.+.+
T Consensus       122 ~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l  165 (167)
T PRK00522        122 AEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL  165 (167)
T ss_pred             cccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence            77         889998 99877776432     3455555554

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=99.02  E-value=3.1e-09  Score=80.34  Aligned_cols=95  Identities=18%  Similarity=0.313  Sum_probs=82.6

Q ss_pred             cccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEee----
Q 015368          164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLH----  238 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~----  238 (408)
                      +..+.+.++++.++..++..+|+||.+..++.+..|..+| .++.++.|+++.+..+.+.+++ .    |++++|+    
T Consensus         2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~----~~ivl~~p~~~   76 (104)
T cd03069           2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY-G----EGVVLFRPPRL   76 (104)
T ss_pred             ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC-C----CceEEEechhh
Confidence            4678899999999999999999999988888999999988 6779999999999999999987 3    8899994    


Q ss_pred             --cCCCcccccCCcCCHHHHHHHHhcC
Q 015368          239 --LEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       239 --~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                        +.+.....|+|+++.++|.+||..+
T Consensus        77 ~~k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          77 SNKFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             hcccCcccccccCcCCHHHHHHHHHhh
Confidence              3445677899999999999999875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.01  E-value=9.7e-10  Score=86.41  Aligned_cols=70  Identities=24%  Similarity=0.533  Sum_probs=60.9

Q ss_pred             CCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------cHhHHHHcCCC--
Q 015368           72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNIL--  126 (408)
Q Consensus        72 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------~~~~~~~~~i~--  126 (408)
                      .+++++|.||++ ||++|+...+.+.++.++++. ++.++.|..+.                     +..+++.|++.  
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  103 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDE  103 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEET
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccc
Confidence            679999999999 999999999999999999987 79999998754                     34578889998  


Q ss_pred             ----cCcEEEEEe-CCeEeE
Q 015368          127 ----AYPTLYLFV-AGVRQF  141 (408)
Q Consensus       127 ----~~Pt~~~~~-~g~~~~  141 (408)
                          .+|++++++ +|++..
T Consensus       104 ~~~~~~p~~~lid~~g~I~~  123 (124)
T PF00578_consen  104 KDTLALPAVFLIDPDGKIRY  123 (124)
T ss_dssp             TTSEESEEEEEEETTSBEEE
T ss_pred             cCCceEeEEEEECCCCEEEe
Confidence                999999999 775543

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.01  E-value=1.1e-10  Score=96.57  Aligned_cols=101  Identities=20%  Similarity=0.381  Sum_probs=92.3

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      .+..++.+|+...+..  -+++.|+||||+.|+...|.|..++.--.+ +|.++.||+..++-+.-+|=+...||++..+
T Consensus        25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvk  102 (248)
T KOG0913|consen   25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVK  102 (248)
T ss_pred             eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEee
Confidence            7788999999988743  499999999999999999999999887666 9999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +| +-.+|.|.++..++..|+...-
T Consensus       103 DG-eFrrysgaRdk~dfisf~~~r~  126 (248)
T KOG0913|consen  103 DG-EFRRYSGARDKNDFISFEEHRE  126 (248)
T ss_pred             cc-ccccccCcccchhHHHHHHhhh
Confidence            99 8899999999999999987654

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.98  E-value=5.4e-09  Score=87.21  Aligned_cols=88  Identities=17%  Similarity=0.312  Sum_probs=69.9

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc----------------------------HhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~  121 (408)
                      .+++++|.|| ++||++|....|.+.++++++.+ ++.++.|.++..                            ..+++
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~  107 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR  107 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence            5789999999 89999999999999999999976 788888876532                            23456


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhH
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREK  159 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~  159 (408)
                      .|++.      ..|++++++ +|++...+.+.    .+.+++.+.|+..
T Consensus       108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            77876      578999998 99888888543    4667787777654

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.96  E-value=5.1e-09  Score=84.55  Aligned_cols=74  Identities=12%  Similarity=0.196  Sum_probs=61.1

Q ss_pred             CCCcEEEEEecCC-ChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-----------------------HhHHHHcCCCc
Q 015368           72 KNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-----------------------KDLAKEYNILA  127 (408)
Q Consensus        72 ~~~~~~v~f~a~w-C~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-----------------------~~~~~~~~i~~  127 (408)
                      .+|+++|+||++| |++|+.++|.+.+++++++ ++.++.|+.+..                       ..+++.||+..
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~  103 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLI  103 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCee
Confidence            5789999999999 6999999999999999986 788888887521                       45667888763


Q ss_pred             ------CcEEEEEe-CCeEeEEeeCC
Q 015368          128 ------YPTLYLFV-AGVRQFQFFGE  146 (408)
Q Consensus       128 ------~Pt~~~~~-~g~~~~~~~g~  146 (408)
                            .|+.++++ +|++...+.|.
T Consensus       104 ~~~~~~~~~~~iid~~G~I~~~~~~~  129 (143)
T cd03014         104 KDLGLLARAVFVIDENGKVIYVELVP  129 (143)
T ss_pred             ccCCccceEEEEEcCCCeEEEEEECC
Confidence                  68999998 99888877754

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>TIGR03137 AhpC peroxiredoxin

Probab=98.95  E-value=6.8e-09  Score=87.51  Aligned_cols=86  Identities=17%  Similarity=0.232  Sum_probs=68.1

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------------cHhHHHHcC
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN  124 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~  124 (408)
                      .+++++|.|| ++||++|..++|.+.++++++++ ++.++.|+++.                         +..+++.||
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g  109 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG  109 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence            5789999999 99999999999999999999875 78888887653                         235678888


Q ss_pred             CC------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHH
Q 015368          125 IL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVR  157 (408)
Q Consensus       125 i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~  157 (408)
                      +.      ..|++++++ +|++...+.+    .++.+++.+.|+
T Consensus       110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~  153 (187)
T TIGR03137       110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK  153 (187)
T ss_pred             CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            86      469999998 8987766543    246777776664

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.95  E-value=9.5e-09  Score=84.08  Aligned_cols=95  Identities=15%  Similarity=0.137  Sum_probs=70.6

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc--------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------------------  115 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------------------  115 (408)
                      +..++++.+...-.++++++|.||++ ||+.|....+.+.++++.+++ ++.++.|+.+.                    
T Consensus        15 l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D   94 (154)
T PRK09437         15 LPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSD   94 (154)
T ss_pred             eeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEC
Confidence            33445544442223678999999986 688899999999999999876 78888888753                    


Q ss_pred             -cHhHHHHcCCCcC------------cEEEEEe-CCeEeEEeeCCCCHHHH
Q 015368          116 -EKDLAKEYNILAY------------PTLYLFV-AGVRQFQFFGERTRDVI  152 (408)
Q Consensus       116 -~~~~~~~~~i~~~------------Pt~~~~~-~g~~~~~~~g~~~~~~l  152 (408)
                       ...++++||+.+.            |+.++++ +|+++..|.|....+.+
T Consensus        95 ~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~  145 (154)
T PRK09437         95 EDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHH  145 (154)
T ss_pred             CCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhH
Confidence             2356778887654            6778887 99999999986555543

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.89  E-value=4.4e-09  Score=82.72  Aligned_cols=70  Identities=21%  Similarity=0.414  Sum_probs=59.7

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCC---cEEEEEeCccc-------------------------HhHHHH
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE---ADLVMVDAYLE-------------------------KDLAKE  122 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---v~~~~v~~~~~-------------------------~~~~~~  122 (408)
                      ..||.+.++|-|.||++|+.+-|.+.++++..+++   +.++-|+.|.+                         .+++++
T Consensus        31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k  110 (157)
T KOG2501|consen   31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK  110 (157)
T ss_pred             hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence            36799999999999999999999999999998874   77777776543                         357889


Q ss_pred             cCCCcCcEEEEEe-CCeEe
Q 015368          123 YNILAYPTLYLFV-AGVRQ  140 (408)
Q Consensus       123 ~~i~~~Pt~~~~~-~g~~~  140 (408)
                      |+|.++|++.+++ +|..+
T Consensus       111 y~v~~iP~l~i~~~dG~~v  129 (157)
T KOG2501|consen  111 YEVKGIPALVILKPDGTVV  129 (157)
T ss_pred             cccCcCceeEEecCCCCEe
Confidence            9999999999998 88554

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.88  E-value=1.5e-08  Score=82.46  Aligned_cols=74  Identities=15%  Similarity=0.285  Sum_probs=55.5

Q ss_pred             CCCcE-EEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc---------------------HhHHHHcCCC--
Q 015368           72 KNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------KDLAKEYNIL--  126 (408)
Q Consensus        72 ~~~~~-~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~---------------------~~~~~~~~i~--  126 (408)
                      .++++ ++.||++||++|+.++|.+.++++++++ ++.++.|+.+..                     ..+.+.||+.  
T Consensus        22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~g~~~~  101 (149)
T cd02970          22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFPVYADPDRKLYRALGLVRS  101 (149)
T ss_pred             cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCeEEECCchhHHHHcCceec
Confidence            33454 5555699999999999999999999975 799999887543                     3456777773  


Q ss_pred             ---------------------------cCcEEEEEe-CCeEeEEeeC
Q 015368          127 ---------------------------AYPTLYLFV-AGVRQFQFFG  145 (408)
Q Consensus       127 ---------------------------~~Pt~~~~~-~g~~~~~~~g  145 (408)
                                                 ..|++++++ +|++...+.|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~  148 (149)
T cd02970         102 LPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD  148 (149)
T ss_pred             CcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence                                       678888887 6766666554

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.88  E-value=2e-08  Score=81.72  Aligned_cols=74  Identities=11%  Similarity=0.314  Sum_probs=60.1

Q ss_pred             CcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------c--HhHHHHcCCCc-
Q 015368           74 RNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------E--KDLAKEYNILA-  127 (408)
Q Consensus        74 ~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------~--~~~~~~~~i~~-  127 (408)
                      ++++|.|| ++||+.|....|.+.++++++++ ++.++.|+.+.                     .  ..+++.|++.. 
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~  108 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE  108 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence            88888888 99999999999999999999975 78888887642                     3  55778888873 


Q ss_pred             ---C--cEEEEEe-CCeEeEEeeCCC
Q 015368          128 ---Y--PTLYLFV-AGVRQFQFFGER  147 (408)
Q Consensus       128 ---~--Pt~~~~~-~g~~~~~~~g~~  147 (408)
                         .  |++++++ +|++...+.|..
T Consensus       109 ~~~~~~~~~~lid~~G~v~~~~~~~~  134 (149)
T cd03018         109 DLGVAERAVFVIDRDGIIRYAWVSDD  134 (149)
T ss_pred             cCCCccceEEEECCCCEEEEEEecCC
Confidence               3  3888887 898888888754

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.87  E-value=2.8e-08  Score=83.14  Aligned_cols=88  Identities=14%  Similarity=0.172  Sum_probs=70.1

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------------cHhHHHHcC
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN  124 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~  124 (408)
                      .+|++++.|| ++||+.|..+++.+.+.++++++ ++.++.|++|.                         +..+++.||
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg  109 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  109 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence            5789999999 99999999999999999999965 78888877653                         346788899


Q ss_pred             C----CcC--cEEEEEe-CCeEeEEee----CCCCHHHHHHHHHhH
Q 015368          125 I----LAY--PTLYLFV-AGVRQFQFF----GERTRDVISAWVREK  159 (408)
Q Consensus       125 i----~~~--Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~  159 (408)
                      +    .+.  |++++++ +|++...+.    ..++.+++.+.++..
T Consensus       110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al  155 (187)
T PRK10382        110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  155 (187)
T ss_pred             CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            8    356  9999998 997766553    236788888777533

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.85  E-value=1.4e-08  Score=78.83  Aligned_cols=82  Identities=28%  Similarity=0.489  Sum_probs=69.0

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-ccHhHHHHcC--CCcCcEEEEEeCCeEeEEeeC--CC
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYN--ILAYPTLYLFVAGVRQFQFFG--ER  147 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-~~~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g--~~  147 (408)
                      ++++++.||++||++|+.+.|.+.++++.+...+.+..+|.. ..+++...++  +..+|++.++.+|.......|  ..
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  111 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVL  111 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcccC
Confidence            789999999999999999999999999999877999999997 7889999999  999999998888865545555  34


Q ss_pred             CHHHHHH
Q 015368          148 TRDVISA  154 (408)
Q Consensus       148 ~~~~l~~  154 (408)
                      ....+..
T Consensus       112 ~~~~~~~  118 (127)
T COG0526         112 PKEALID  118 (127)
T ss_pred             CHHHHHH
Confidence            4444443

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=98.83  E-value=4.1e-08  Score=74.28  Aligned_cols=97  Identities=13%  Similarity=0.218  Sum_probs=82.0

Q ss_pred             CcccccChhHHHHHhccC-CeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEee--
Q 015368          163 GTYSITTTDEAERILTVE-SKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLH--  238 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~-~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~--  238 (408)
                      +++.|.+.++++.++... +..+|+||.+..+..+..|..+| .++.++.|+.+.+..+..++++.    .|.+++|+  
T Consensus         1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~----~~~vvl~rp~   76 (107)
T cd03068           1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVS----PGQLVVFQPE   76 (107)
T ss_pred             CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCC----CCceEEECcH
Confidence            356788999999999877 89999999887778899999988 67799999999999999999887    48889894  


Q ss_pred             ----cCCCcccccCCc-CCHHH-HHHHHhcC
Q 015368          239 ----LEAGKATPFRHQ-FTRLA-IANFVTHT  263 (408)
Q Consensus       239 ----~~~~~~~~y~g~-~~~~~-i~~fi~~~  263 (408)
                          ..+.....|+|. .+.++ |..||..|
T Consensus        77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~  107 (107)
T cd03068          77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKEH  107 (107)
T ss_pred             HHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence                456678899988 67755 99999865

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.81  E-value=5.7e-08  Score=82.85  Aligned_cols=89  Identities=18%  Similarity=0.223  Sum_probs=69.2

Q ss_pred             CCCcEEE-EEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------------cHhHHHH
Q 015368           72 KNRNVMV-MFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE  122 (408)
Q Consensus        72 ~~~~~~v-~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~  122 (408)
                      .++.++| .||++||+.|..+++.+.++++++++ ++.++.|+++.                           +..+++.
T Consensus        26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~  105 (202)
T PRK13190         26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE  105 (202)
T ss_pred             CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence            5676655 68999999999999999999999976 78888887653                           2356778


Q ss_pred             cCCC------cCcEEEEEe-CCeEeEEe----eCCCCHHHHHHHHHhHh
Q 015368          123 YNIL------AYPTLYLFV-AGVRQFQF----FGERTRDVISAWVREKM  160 (408)
Q Consensus       123 ~~i~------~~Pt~~~~~-~g~~~~~~----~g~~~~~~l~~~i~~~~  160 (408)
                      ||+.      .+|++++++ +|++....    .+.++.+++.+.++...
T Consensus       106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            8884      589999998 88665544    45578899888886543

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=98.79  E-value=3.4e-08  Score=82.13  Aligned_cols=56  Identities=9%  Similarity=0.036  Sum_probs=44.4

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY  114 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~  114 (408)
                      +..++++.+...--.+|+++|.|||+||+.|+ .+|.+++++++|++ ++.++.+.|+
T Consensus        10 ~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         10 VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeecc
Confidence            33445554443334679999999999999997 59999999999987 8999999985

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.77  E-value=5.3e-08  Score=68.60  Aligned_cols=69  Identities=12%  Similarity=0.177  Sum_probs=54.2

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI  152 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l  152 (408)
                      +..|+++||++|+...+.+.+      .++.+..+|+++++.    +++.+++.++|++++.  |+.   ..| .+.+.|
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i   69 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS------KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKL   69 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH------CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---Eee-CCHHHH
Confidence            567999999999999888765      268889999987654    5567999999999874  643   556 577888


Q ss_pred             HHHHH
Q 015368          153 SAWVR  157 (408)
Q Consensus       153 ~~~i~  157 (408)
                      .++++
T Consensus        70 ~~~i~   74 (74)
T TIGR02196        70 DQLLE   74 (74)
T ss_pred             HHHhC
Confidence            88763

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=98.75  E-value=5.1e-08  Score=78.36  Aligned_cols=77  Identities=17%  Similarity=0.250  Sum_probs=63.1

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------cHhHHHHcCCCc
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------EKDLAKEYNILA  127 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------~~~~~~~~~i~~  127 (408)
                      .+++++|.|| +.||+.|...+|.+.+++++++. ++.++.|..+.                      +..+.+.||+..
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~  100 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI  100 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence            6899999999 78999999999999999999854 78888887653                      234667788776


Q ss_pred             Cc---------EEEEEe-CCeEeEEeeCCCC
Q 015368          128 YP---------TLYLFV-AGVRQFQFFGERT  148 (408)
Q Consensus       128 ~P---------t~~~~~-~g~~~~~~~g~~~  148 (408)
                      .|         ++++++ +|+++.++.|...
T Consensus       101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~  131 (140)
T cd02971         101 EKSAGGGLAARATFIIDPDGKIRYVEVEPLP  131 (140)
T ss_pred             ccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence            65         788888 7988888888754

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.72  E-value=3.9e-08  Score=79.22  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=38.6

Q ss_pred             CCCcEEEEEecCCChh-HHhhhHHHHHHHHHhcC----CcEEEEEeCc
Q 015368           72 KNRNVMVMFYANWCYW-SKKLAPEFAAAAKMLKG----EADLVMVDAY  114 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~-C~~~~p~~~~~~~~~~~----~v~~~~v~~~  114 (408)
                      .+++++|.||++||++ |....+.+.++++++++    ++.++.|+++
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            6789999999999998 99999999999999975    3889888865

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK15000 peroxidase; Provisional

Probab=98.71  E-value=1.5e-07  Score=79.99  Aligned_cols=87  Identities=17%  Similarity=0.288  Sum_probs=70.4

Q ss_pred             CCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc----------------------------HhHHH
Q 015368           72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~  121 (408)
                      ++++++|.||+. ||+.|..+++.+.+.++++++ ++.++.|++|..                            ..+++
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~  112 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK  112 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence            578999999995 999999999999999999976 788888887632                            24567


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHh
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVRE  158 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~  158 (408)
                      .||+.      +.|++++++ +|++...+.|.    ++.+++.+.++.
T Consensus       113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a  160 (200)
T PRK15000        113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA  160 (200)
T ss_pred             HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence            78887      689999999 99877766653    577777777754

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.69  E-value=2.2e-07  Score=70.54  Aligned_cols=93  Identities=12%  Similarity=0.169  Sum_probs=72.9

Q ss_pred             ChhHHHHHhccCCeEEEEEec--CCCCcCHHHHHHHh-cc---CCceeEEEecC--------HhHHhhcCCCCCCCCCeE
Q 015368          169 TTDEAERILTVESKLVLGFLH--DLEGMESEELAAAS-KL---HSDVNFYQTTS--------ADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       169 ~~~~~~~~~~~~~~~vi~f~~--~~~~~~~~~~~~~a-~~---~~~~~f~~~~~--------~~l~~~~~i~~~~~~p~l  234 (408)
                      +.+.+++++..++.++|.|+.  +||+. .+.+..+| ++   ...+.++.+..        .+|+++|+|+.. ++|+|
T Consensus         7 ~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~-gyPTl   84 (116)
T cd03007           7 DTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKE-SYPVI   84 (116)
T ss_pred             ChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcC-CCCEE
Confidence            568899999999999999999  99995 35555555 22   34577776533        679999999721 49999


Q ss_pred             EEeecCC-CcccccCCc-CCHHHHHHHHhcC
Q 015368          235 IFLHLEA-GKATPFRHQ-FTRLAIANFVTHT  263 (408)
Q Consensus       235 ~~~~~~~-~~~~~y~g~-~~~~~i~~fi~~~  263 (408)
                      .+|+.++ ..+..|+|. ++.++|.+||+++
T Consensus        85 ~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          85 YLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             EEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            9999873 457899996 9999999999875

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.66  E-value=2.7e-07  Score=79.06  Aligned_cols=83  Identities=17%  Similarity=0.194  Sum_probs=69.9

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-----------ccHhHHHHcCCCcCcEEEEEe-CC-e
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-----------LEKDLAKEYNILAYPTLYLFV-AG-V  138 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-----------~~~~~~~~~~i~~~Pt~~~~~-~g-~  138 (408)
                      .++.-|+.||.+.|+.|+.+.|.+..+++++  ++.+..|++|           .+..+++++||..+|++++++ ++ +
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~  196 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK  196 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence            4678899999999999999999999999999  5888888877           357899999999999999999 44 3


Q ss_pred             EeEEeeCCCCHHHHHHHH
Q 015368          139 RQFQFFGERTRDVISAWV  156 (408)
Q Consensus       139 ~~~~~~g~~~~~~l~~~i  156 (408)
                      ....-.|..+.++|.+-|
T Consensus       197 ~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  197 WYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             EEEEeeecCCHHHHHHhh
Confidence            444456999999987654

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.66  E-value=1.2e-07  Score=64.71  Aligned_cols=60  Identities=33%  Similarity=0.634  Sum_probs=52.6

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHH---HcCCCcCcEEEEEeCC
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK---EYNILAYPTLYLFVAG  137 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~---~~~i~~~Pt~~~~~~g  137 (408)
                      ++.||++||++|+++.+.+.++ +....++.+..++++......+   .+++.++|++++++.|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            4789999999999999999998 4445589999999998877665   8899999999999876

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=98.63  E-value=4.1e-07  Score=79.73  Aligned_cols=86  Identities=16%  Similarity=0.219  Sum_probs=67.7

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      +++++++.|| ++||+.|..+++.+.+.++++++ ++.++.|.+|.                            +..+++
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak  176 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK  176 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence            4667777777 89999999999999999999976 78888887764                            235678


Q ss_pred             HcCCC-----cCcEEEEEe-CCeEeEEee----CCCCHHHHHHHHH
Q 015368          122 EYNIL-----AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVR  157 (408)
Q Consensus       122 ~~~i~-----~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~  157 (408)
                      .||+.     ..|++++++ +|++...+.    ..++.+++.+.|+
T Consensus       177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~  222 (261)
T PTZ00137        177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD  222 (261)
T ss_pred             HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            89985     589999998 897766552    3467777777765

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.63  E-value=3.7e-07  Score=78.03  Aligned_cols=85  Identities=14%  Similarity=0.163  Sum_probs=65.7

Q ss_pred             cEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------------cHhHHHHcCCC
Q 015368           75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKEYNIL  126 (408)
Q Consensus        75 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~~~i~  126 (408)
                      .+++.||++||+.|..+++.+.++++++++ ++.++.|+++.                           +..+++.||+.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~  107 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI  107 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence            456689999999999999999999999976 78899888764                           23567888875


Q ss_pred             ----c----CcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHhH
Q 015368          127 ----A----YPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK  159 (408)
Q Consensus       127 ----~----~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~  159 (408)
                          +    .|++++++ +|++...+.+    .++.+++.+.|+..
T Consensus       108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l  153 (203)
T cd03016         108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL  153 (203)
T ss_pred             cccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence                2    35688888 8877766654    35677787777544

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.61  E-value=1.3e-06  Score=75.44  Aligned_cols=194  Identities=14%  Similarity=0.158  Sum_probs=129.1

Q ss_pred             hhHHHHHhccCCeEEEEEecCCCCc---CHHHHHHHh-ccC-----CceeEEEe---cCHhHHhhcCCCCCCCCCeEEEe
Q 015368          170 TDEAERILTVESKLVLGFLHDLEGM---ESEELAAAS-KLH-----SDVNFYQT---TSADVAEFFHIHPKSKRPALIFL  237 (408)
Q Consensus       170 ~~~~~~~~~~~~~~vi~f~~~~~~~---~~~~~~~~a-~~~-----~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~  237 (408)
                      .+.++..++....+++.|+++||.-   ..+.|.++| ++.     +++.++.+   ....++++|.|+   ++|++-++
T Consensus         3 ~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~---KyPTlKvf   79 (375)
T KOG0912|consen    3 SENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHIN---KYPTLKVF   79 (375)
T ss_pred             cccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccc---cCceeeee
Confidence            3567788888999999999999964   666677665 322     55667765   556799999999   79999999


Q ss_pred             ecCCCcccccCCcCCHHHHHHHHhcCCCCceEeeccc-cccccccCCccEEEEEeeCCCchHHHHHHHHHHHHhcCCcce
Q 015368          238 HLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIH-NAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNM  316 (408)
Q Consensus       238 ~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~-~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~vA~~~~~~~~~  316 (408)
                      +++.--.-.|.|.++.+++.+||++...-.+.++.+. .+..+.....-.+|.|....+..++ +.++++|.-++..   
T Consensus        80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey-~~~~kva~~lr~d---  155 (375)
T KOG0912|consen   80 RNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEY-DNLRKVASLLRDD---  155 (375)
T ss_pred             eccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchH-HHHHHHHHHHhhc---
Confidence            9987666689999999999999998666556655433 3333433333456666665554444 5788999999988   


Q ss_pred             EEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc--CCccccCCCCC-ChHHHHHHHHHHhcCcc
Q 015368          317 LLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR--DAKKYVLNGEL-TLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       317 i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~--~~~~y~~~~~~-~~~~i~~Fi~~~~~gk~  380 (408)
                      ..|...=++..       ...  .+...+ +.+++.  ...--.|.|.+ +.+.+.+||++=--+-+
T Consensus       156 c~f~V~~gD~~-------~~~--~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLV  212 (375)
T KOG0912|consen  156 CVFLVGFGDLL-------KPH--EPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLV  212 (375)
T ss_pred             cEEEeeccccc-------cCC--CCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhh
Confidence            77765543221       111  111123 334443  11111467744 45889999988555444

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.60  E-value=5.6e-07  Score=77.22  Aligned_cols=87  Identities=14%  Similarity=0.192  Sum_probs=67.6

Q ss_pred             CCCc-EEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc---------------------------HhHHHH
Q 015368           72 KNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------------KDLAKE  122 (408)
Q Consensus        72 ~~~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~---------------------------~~~~~~  122 (408)
                      .+++ +|+.||++||+.|..+++.+.++++++++ ++.++.|++|..                           ..+++.
T Consensus        27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~  106 (215)
T PRK13599         27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ  106 (215)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence            4565 56899999999999999999999999976 788888887642                           346778


Q ss_pred             cCCC-------cCcEEEEEe-CCeEeEEee----CCCCHHHHHHHHHh
Q 015368          123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVRE  158 (408)
Q Consensus       123 ~~i~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~  158 (408)
                      ||+.       ..|++++++ +|++...+.    ..++.+++.+.++.
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~  154 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA  154 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            8873       579999998 897765542    23577888777754

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.60  E-value=3.3e-07  Score=65.14  Aligned_cols=70  Identities=17%  Similarity=0.288  Sum_probs=50.4

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHH-----cCCCcCcEEEEEeCCeEeEEeeCCCCHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE-----YNILAYPTLYLFVAGVRQFQFFGERTRDV  151 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~-----~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~  151 (408)
                      ++.||++||++|+++.+.+.+.      ++.+-.+|+++++.....     +++.++|++ ++++|....    ..+..+
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----~~~~~~   70 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT----NPSAAQ   70 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----CCCHHH
Confidence            5789999999999999988665      355667888877666555     389999997 577884433    345556


Q ss_pred             HHHHHH
Q 015368          152 ISAWVR  157 (408)
Q Consensus       152 l~~~i~  157 (408)
                      +.+.++
T Consensus        71 ~~~~l~   76 (77)
T TIGR02200        71 VKAKLQ   76 (77)
T ss_pred             HHHHhh
Confidence            655543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.60  E-value=4.3e-07  Score=68.38  Aligned_cols=98  Identities=17%  Similarity=0.222  Sum_probs=78.5

Q ss_pred             CceEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          266 PLVVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       266 p~v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      |-+.+++.+++......+.++++ ++.+|+. |+...+.+.++|+++++.   +.|+.+|+++.   +.+++.+++.  .
T Consensus         1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~---~~~~~~~~v~--~   72 (101)
T cd03003           1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDD---RMLCRSQGVN--S   72 (101)
T ss_pred             CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCcc---HHHHHHcCCC--c
Confidence            45678888898888766665555 5566776 899999999999999988   99999999874   4788999994  4


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHH
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSF  371 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~F  371 (408)
                      .|.++++..+.....+.|..+.+.|.+|
T Consensus        73 ~Pt~~~~~~g~~~~~~~G~~~~~~l~~f  100 (101)
T cd03003          73 YPSLYVFPSGMNPEKYYGDRSKESLVKF  100 (101)
T ss_pred             cCEEEEEcCCCCcccCCCCCCHHHHHhh
Confidence            6888888654445668899999999887

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.58  E-value=2.1e-06  Score=64.30  Aligned_cols=104  Identities=23%  Similarity=0.349  Sum_probs=81.4

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHH-HHhcC--CcEEEEEeCc-----ccHhHHHHcCC--
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAA-KMLKG--EADLVMVDAY-----LEKDLAKEYNI--  125 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~-~~~~~--~v~~~~v~~~-----~~~~~~~~~~i--  125 (408)
                      .....|+.-+|++.+.+.+.++|.|-...  |--+-+..|.+++ +..+.  ++-++.|.+.     +|.+++++|++  
T Consensus         4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k   81 (126)
T PF07912_consen    4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK   81 (126)
T ss_dssp             TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred             CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence            45678999999999999999999997654  4456677899999 44433  8999999885     46899999999  


Q ss_pred             CcCcEEEEEe-CCeEeEEe--eCCCCHHHHHHHHHhHhC
Q 015368          126 LAYPTLYLFV-AGVRQFQF--FGERTRDVISAWVREKMT  161 (408)
Q Consensus       126 ~~~Pt~~~~~-~g~~~~~~--~g~~~~~~l~~~i~~~~~  161 (408)
                      ..+|.+++|. +.+...+|  .|+.+.+.|.+|+.++.+
T Consensus        82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~  120 (126)
T PF07912_consen   82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG  120 (126)
T ss_dssp             CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred             ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence            5689999999 44677888  899999999999998864

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>PRK13189 peroxiredoxin; Provisional

Probab=98.58  E-value=6.4e-07  Score=77.39  Aligned_cols=88  Identities=14%  Similarity=0.205  Sum_probs=67.0

Q ss_pred             CCC-cEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------------cHhHHHH
Q 015368           72 KNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLAKE  122 (408)
Q Consensus        72 ~~~-~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~~~  122 (408)
                      .++ .+|+.||++||+.|..+++.+.++++++++ ++.++.|.+|.                           +..++++
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~  113 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK  113 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence            466 455678999999999999999999999976 78888887763                           2346778


Q ss_pred             cCCC-------cCcEEEEEe-CCeEeEEee----CCCCHHHHHHHHHhH
Q 015368          123 YNIL-------AYPTLYLFV-AGVRQFQFF----GERTRDVISAWVREK  159 (408)
Q Consensus       123 ~~i~-------~~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i~~~  159 (408)
                      ||+.       ..|++++++ +|++...+.    ..++.+++.+.|+..
T Consensus       114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  162 (222)
T PRK13189        114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL  162 (222)
T ss_pred             hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8875       469999998 897655544    345777887777643

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.56  E-value=3.1e-07  Score=69.62  Aligned_cols=99  Identities=25%  Similarity=0.269  Sum_probs=78.3

Q ss_pred             CceEeeccccccccccC-CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          266 PLVVTLTIHNAQFVFQD-PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       266 p~v~~lt~~~~~~~~~~-~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      |.+.+++.+++...... +.++++ +|.+|+. |+...+.+.++|+++.+.   +.|+.+|++..   ..+++.+|+.  
T Consensus         1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~---~~~~~~~~i~--   72 (104)
T cd03004           1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKY---ESLCQQANIR--   72 (104)
T ss_pred             CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCch---HHHHHHcCCC--
Confidence            45678888888886544 345555 5566776 899999999999999888   99999999874   4788999994  


Q ss_pred             CCcEEEEEccC-CccccCCCCCC-hHHHHHHH
Q 015368          343 APRVIAYSARD-AKKYVLNGELT-LSSIKSFG  372 (408)
Q Consensus       343 ~~p~i~i~~~~-~~~y~~~~~~~-~~~i~~Fi  372 (408)
                      ..|.++++..+ ...+.+.|..+ .++|.+||
T Consensus        73 ~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i  104 (104)
T cd03004          73 AYPTIRLYPGNASKYHSYNGWHRDADSILEFI  104 (104)
T ss_pred             cccEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence            36888888774 66777899876 89998885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=6.8e-07  Score=74.21  Aligned_cols=164  Identities=14%  Similarity=0.200  Sum_probs=108.0

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHH
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD  150 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~  150 (408)
                      .+.+..++.|||+||.+|+++...++.+++.. .++.++.++.++.++++..+.+...|.+.++..|+.+.+..|.....
T Consensus        15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~   93 (227)
T KOG0911|consen   15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF   93 (227)
T ss_pred             hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence            47789999999999999999999999999998 58999999999999999999999999999999888888888876655


Q ss_pred             HHHHH---HHhHh---C----CCccccc--ChhHHHHHhcc--CCeEEEEEecC-----CCCcCHHHHHHHhccCCceeE
Q 015368          151 VISAW---VREKM---T----LGTYSIT--TTDEAERILTV--ESKLVLGFLHD-----LEGMESEELAAASKLHSDVNF  211 (408)
Q Consensus       151 ~l~~~---i~~~~---~----~~~~~i~--~~~~~~~~~~~--~~~~vi~f~~~-----~~~~~~~~~~~~a~~~~~~~f  211 (408)
                      ....+   .....   +    +.+.+..  ..+.++..+..  +...+++|...     .|+-.......+....-.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~  173 (227)
T KOG0911|consen   94 LVSKVEKLAESGSASLGMGLSTTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTI  173 (227)
T ss_pred             HHHHHHHhhhhcccccCCCCCcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeE
Confidence            44333   22221   0    1111110  01112223321  22334445532     345555566666554444544


Q ss_pred             E-EecCHhHHhhcCC-CCCCCCCeEE
Q 015368          212 Y-QTTSADVAEFFHI-HPKSKRPALI  235 (408)
Q Consensus       212 ~-~~~~~~l~~~~~i-~~~~~~p~l~  235 (408)
                      + .-+++++++.++. +++..+|.+.
T Consensus       174 fdIL~DeelRqglK~fSdWPTfPQly  199 (227)
T KOG0911|consen  174 FDVLTDEELRQGLKEFSDWPTFPQLY  199 (227)
T ss_pred             EeccCCHHHHHHhhhhcCCCCcccee
Confidence            4 4488888886653 3323455554

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.55  E-value=4.5e-07  Score=72.78  Aligned_cols=81  Identities=20%  Similarity=0.342  Sum_probs=58.4

Q ss_pred             EcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHH-H--HHHHHHhcCCcEEEEEeCcccHhHHHHc--------CCCcC
Q 015368           60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAKEY--------NILAY  128 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~i~~~  128 (408)
                      ..+.+.++.+..++|+++|.++.+||..|+.|..+ |  .++++.++.++.-++||.++.+++.+.|        |..|+
T Consensus        24 ~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGw  103 (163)
T PF03190_consen   24 PWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGW  103 (163)
T ss_dssp             -SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---S
T ss_pred             cCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCC
Confidence            44567788888899999999999999999998864 3  5577777778999999999999998887        78999


Q ss_pred             cEEEEEe-CCeEe
Q 015368          129 PTLYLFV-AGVRQ  140 (408)
Q Consensus       129 Pt~~~~~-~g~~~  140 (408)
                      |+.+++. +|+..
T Consensus       104 Pl~vfltPdg~p~  116 (163)
T PF03190_consen  104 PLTVFLTPDGKPF  116 (163)
T ss_dssp             SEEEEE-TTS-EE
T ss_pred             CceEEECCCCCee
Confidence            9999998 88654

; PDB: 3IRA_A.

>PRK13191 putative peroxiredoxin; Provisional

Probab=98.55  E-value=1.1e-06  Score=75.59  Aligned_cols=88  Identities=15%  Similarity=0.184  Sum_probs=67.3

Q ss_pred             CCCcEE-EEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc---------------------------HhHHHH
Q 015368           72 KNRNVM-VMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------------KDLAKE  122 (408)
Q Consensus        72 ~~~~~~-v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~---------------------------~~~~~~  122 (408)
                      .+|+++ +.||++||+.|..+++.+.++++++++ ++.++.|++|..                           ..++++
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~  111 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR  111 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence            456555 488999999999999999999999976 788888887632                           356677


Q ss_pred             cCCC-------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHhH
Q 015368          123 YNIL-------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK  159 (408)
Q Consensus       123 ~~i~-------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~  159 (408)
                      ||+.       ..|++++++ +|++...+.+    .++.+++.+.|+..
T Consensus       112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al  160 (215)
T PRK13191        112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL  160 (215)
T ss_pred             cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            8863       369999998 8876665432    36788888877643

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.50  E-value=7.4e-07  Score=67.26  Aligned_cols=99  Identities=19%  Similarity=0.265  Sum_probs=80.4

Q ss_pred             eEeeccccccccccC-CccEEEEEe-eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVFQD-PRKQLWLFA-PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~~~-~~~~~i~f~-~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      |..+|.+++...... ..+.++.|+ +++. |+...+.|.++++++.++   +.|+.+|++..   +.+++.+++..  .
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~---~~l~~~~~v~~--~   72 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDN---VKFAKVDCDEN---KELCKKYGVKS--V   72 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTS---HHHHHHTTCSS--S
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccc---cccchhhhhcc---chhhhccCCCC--C
Confidence            457888999988877 556665554 5565 999999999999999987   99999999864   58899999954  6


Q ss_pred             cEEEEEccCCccccCCCCCChHHHHHHHHH
Q 015368          345 RVIAYSARDAKKYVLNGELTLSSIKSFGEE  374 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~  374 (408)
                      |.++++..+.....+.|..+.+.|.+||++
T Consensus        73 Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   73 PTIIFFKNGKEVKRYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             SEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred             CEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence            888888765555578899999999999986

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=98.50  E-value=1.6e-06  Score=73.93  Aligned_cols=86  Identities=19%  Similarity=0.383  Sum_probs=66.3

Q ss_pred             CCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc----------------------------HhHHH
Q 015368           72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~  121 (408)
                      .+++++|.||+ .||++|..+.+.+.+++++++. ++.++.|+++..                            .++++
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~  114 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR  114 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence            57899999995 8899999999999999999977 888888887632                            34678


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHH
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVR  157 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~  157 (408)
                      .||+.      .+|+.++++ +|++...+.+    .++.+++.+.|.
T Consensus       115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~  161 (199)
T PTZ00253        115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLE  161 (199)
T ss_pred             HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence            88885      478999999 8876665544    245555555554

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.49  E-value=1.4e-06  Score=66.44  Aligned_cols=93  Identities=23%  Similarity=0.330  Sum_probs=71.6

Q ss_pred             cccccChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHh-ccC------CceeEEEe---cCHhHHhhcCCCCCCC
Q 015368          164 TYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLH------SDVNFYQT---TSADVAEFFHIHPKSK  230 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~------~~~~f~~~---~~~~l~~~~~i~~~~~  230 (408)
                      +..+ +.+.++..++.++.++|.|+++||.++   .+.+..++ .+.      +.+.|+.+   .+.++++++++.   +
T Consensus         3 v~~l-~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~---~   78 (108)
T cd02996           3 IVSL-TSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRIN---K   78 (108)
T ss_pred             eEEc-CHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCC---c
Confidence            3455 557888888888889999999999863   45566555 221      24777655   567899999999   5


Q ss_pred             CCeEEEeecCCCcccccCCcCCHHHHHHHH
Q 015368          231 RPALIFLHLEAGKATPFRHQFTRLAIANFV  260 (408)
Q Consensus       231 ~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi  260 (408)
                      +|++++|+.+......|.|..+.++|.+||
T Consensus        79 ~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi  108 (108)
T cd02996          79 YPTLKLFRNGMMMKREYRGQRSVEALAEFV  108 (108)
T ss_pred             CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence            999999987654568899999999999986

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.49  E-value=2.2e-05  Score=77.98  Aligned_cols=179  Identities=13%  Similarity=0.110  Sum_probs=132.3

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe-CCeE-eEEeeCCCCH
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGVR-QFQFFGERTR  149 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~-~g~~-~~~~~g~~~~  149 (408)
                      .+.+.++.|+.+.|..|.++...++++++ +.+++.+...|..++.+++++|++...|++.+++ +|+. -.+|.|-..-
T Consensus       365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G  443 (555)
T TIGR03143       365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSG  443 (555)
T ss_pred             CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCcc
Confidence            34557888999999999999999999884 4568999889999999999999999999999996 6533 3789998888


Q ss_pred             HHHHHHHHhHh--CCCcccccChhHHHHHhccCCe-EEEEEecCCCCcCHHHHH---HHhccCCceeEEE---ecCHhHH
Q 015368          150 DVISAWVREKM--TLGTYSITTTDEAERILTVESK-LVLGFLHDLEGMESEELA---AASKLHSDVNFYQ---TTSADVA  220 (408)
Q Consensus       150 ~~l~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~-~vi~f~~~~~~~~~~~~~---~~a~~~~~~~f~~---~~~~~l~  220 (408)
                      .++..||.-.+  +..-..+ +.+..+.+..-+++ -+-.|..++|..+.....   .++...+++..-.   ...++++
T Consensus       444 ~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~  522 (555)
T TIGR03143       444 HELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLK  522 (555)
T ss_pred             HhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHH
Confidence            88888887665  2233344 55556655554444 455678999998776544   3443333454333   3567899


Q ss_pred             hhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHH
Q 015368          221 EFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFV  260 (408)
Q Consensus       221 ~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi  260 (408)
                      ++|++.   +.|++++-     ....+.|..+.+++.+|+
T Consensus       523 ~~~~v~---~vP~~~i~-----~~~~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       523 DEYGIM---SVPAIVVD-----DQQVYFGKKTIEEMLELI  554 (555)
T ss_pred             HhCCce---ecCEEEEC-----CEEEEeeCCCHHHHHHhh
Confidence            999998   58999853     124577888889999886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.48  E-value=2.6e-06  Score=65.31  Aligned_cols=92  Identities=8%  Similarity=-0.014  Sum_probs=71.2

Q ss_pred             HHHcCCCcEEEEEecC----CChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc--HhHHHHcCCCcCcEEEEEe----CC
Q 015368           68 EFMGKNRNVMVMFYAN----WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--KDLAKEYNILAYPTLYLFV----AG  137 (408)
Q Consensus        68 ~~~~~~~~~~v~f~a~----wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~----~g  137 (408)
                      ...++.|.++|++|++    ||..|+.... =.++.+.++.++.+...|++..  .+++..+++.++|++.++.    +.
T Consensus        12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~   90 (116)
T cd02991          12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM   90 (116)
T ss_pred             HHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence            3446789999999999    8999976541 1334444455788888888643  5689999999999999994    33


Q ss_pred             eEeEEeeCCCCHHHHHHHHHhHh
Q 015368          138 VRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       138 ~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +++.+..|..+++++...++...
T Consensus        91 ~vv~~i~G~~~~~~ll~~L~~~~  113 (116)
T cd02991          91 TIVGRLEGLIQPEDLINRLTFIM  113 (116)
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHH
Confidence            56789999999999999887654

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.44  E-value=2.5e-06  Score=74.34  Aligned_cols=86  Identities=19%  Similarity=0.247  Sum_probs=71.9

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-----------HhHHHHcCCCcCcEEEEEe-CCeEe
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-----------KDLAKEYNILAYPTLYLFV-AGVRQ  140 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-----------~~~~~~~~i~~~Pt~~~~~-~g~~~  140 (408)
                      ++.-|+.||.+.|+.|+++.|.++.++++|+  +.+..|++|..           ..+++++||..+|++++++ +++..
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~  227 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM  227 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence            4689999999999999999999999999994  88888888754           4588999999999999999 43333


Q ss_pred             -EEeeCCCCHHHHHHHHHhHh
Q 015368          141 -FQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       141 -~~~~g~~~~~~l~~~i~~~~  160 (408)
                       -.-.|.++.++|.+-|...+
T Consensus       228 ~pv~~G~iS~deL~~Ri~~v~  248 (256)
T TIGR02739       228 SPLAYGFISQDELKERILNVL  248 (256)
T ss_pred             EEEeeccCCHHHHHHHHHHHH
Confidence             33459999999988776654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.44  E-value=9.7e-07  Score=67.48  Aligned_cols=100  Identities=22%  Similarity=0.278  Sum_probs=77.8

Q ss_pred             eEeeccccccccccC-CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVFQD-PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~~~-~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +.+++.+++...... +.+.++ ++.+|+. |+.....+.++|+++.+.   +.|+.+|++... ...+++.|++..  .
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~-~~~~~~~~~i~~--~   75 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK-NKPLCGKYGVQG--F   75 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc-cHHHHHHcCCCc--C
Confidence            467888888887654 334544 5566776 888999999999999988   999999998743 357889999954  6


Q ss_pred             cEEEEEccCC-----ccccCCCCCChHHHHHHHH
Q 015368          345 RVIAYSARDA-----KKYVLNGELTLSSIKSFGE  373 (408)
Q Consensus       345 p~i~i~~~~~-----~~y~~~~~~~~~~i~~Fi~  373 (408)
                      |.+++++.++     ..+.+.|..+.++|.+||+
T Consensus        76 Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~  109 (109)
T cd03002          76 PTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL  109 (109)
T ss_pred             CEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence            8888888743     3466889999999999984

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=98.43  E-value=5.9e-06  Score=71.30  Aligned_cols=177  Identities=12%  Similarity=0.104  Sum_probs=113.8

Q ss_pred             ccCCeEEEEEecCCCCcC---HHHHHHHh-cc---CCceeEE---EecCHhHHhhcCCCCCCCCCeEEEeecCCCccccc
Q 015368          178 TVESKLVLGFLHDLEGME---SEELAAAS-KL---HSDVNFY---QTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPF  247 (408)
Q Consensus       178 ~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~---~~~~~f~---~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y  247 (408)
                      +.++.|++-||++||.++   .+.+.+.. .+   ..-++.+   .+.-+.++..|++.   |+|+|.+++.+  ..+.|
T Consensus        41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiq---GYPTIk~~kgd--~a~dY  115 (468)
T KOG4277|consen   41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQ---GYPTIKFFKGD--HAIDY  115 (468)
T ss_pred             ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccC---CCceEEEecCC--eeeec
Confidence            456789999999999864   44555554 22   2233444   35677899999999   79999999865  78999


Q ss_pred             CCcCCHHHHHHHHhcCCCCceEeecccccc--ccccCCccEEEEEeeCCCchHHHHHHHHHHHHhcCCcceEEEEEEEcC
Q 015368          248 RHQFTRLAIANFVTHTKHPLVVTLTIHNAQ--FVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMN  325 (408)
Q Consensus       248 ~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~--~~~~~~~~~~i~f~~~~~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~  325 (408)
                      .|.++.++|.+|.....-|++..+++....  .+-....|.+++|-..+.  -..+.+.+.|.+.      +.+++.-+.
T Consensus       116 RG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~--PL~d~fidAASe~------~~~a~FfSa  187 (468)
T KOG4277|consen  116 RGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEG--PLFDAFIDAASEK------FSVARFFSA  187 (468)
T ss_pred             CCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCC--cHHHHHHHHhhhh------eeeeeeecc
Confidence            999999999999999999999998874322  222233377777765543  3334555665543      222222222


Q ss_pred             CcccccchhhhccCCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHH
Q 015368          326 SEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEE  374 (408)
Q Consensus       326 ~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~  374 (408)
                      .+++.++    .+ +....|+++++.. +.++. ..+.+.+.+..||+.
T Consensus       188 seeVaPe----~~-~~kempaV~VFKD-etf~i-~de~dd~dLseWinR  229 (468)
T KOG4277|consen  188 SEEVAPE----EN-DAKEMPAVAVFKD-ETFEI-EDEGDDEDLSEWINR  229 (468)
T ss_pred             ccccCCc----cc-chhhccceEEEcc-ceeEE-EecCchhHHHHHHhH
Confidence            2222222    11 2345688888753 33443 333456778888865

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.43  E-value=1.7e-06  Score=76.17  Aligned_cols=103  Identities=18%  Similarity=0.231  Sum_probs=77.4

Q ss_pred             CCcEEcC-hhhHHHHHcC---CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           56 KDVVSLN-GKNFSEFMGK---NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        56 ~~~~~l~-~~~~~~~~~~---~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      ..+.+++ ++.|-..+.+   +..|+|.||.+.++.|..+-..+..+|.+|. .+.|++|.....+ +...|.+.+.|++
T Consensus       125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~~~~f~~~~LPtl  202 (265)
T PF02114_consen  125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYP-EVKFVKIRASKCP-ASENFPDKNLPTL  202 (265)
T ss_dssp             -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred             ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-ceEEEEEehhccC-cccCCcccCCCEE
Confidence            5677885 5778777743   3469999999999999999999999999998 7999999877654 7789999999999


Q ss_pred             EEEeCCeEeEEeeC-------CCCHHHHHHHHHhHh
Q 015368          132 YLFVAGVRQFQFFG-------ERTRDVISAWVREKM  160 (408)
Q Consensus       132 ~~~~~g~~~~~~~g-------~~~~~~l~~~i~~~~  160 (408)
                      ++|++|..+..+.|       ..+.+++..||.++-
T Consensus       203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G  238 (265)
T PF02114_consen  203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG  238 (265)
T ss_dssp             EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred             EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence            99999988877764       355677777777664

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.42  E-value=3.4e-06  Score=59.61  Aligned_cols=72  Identities=17%  Similarity=0.391  Sum_probs=56.5

Q ss_pred             EEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeC-CCCHHHHHHHHH
Q 015368           79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG-ERTRDVISAWVR  157 (408)
Q Consensus        79 ~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~~~~~~l~~~i~  157 (408)
                      .+++++|+.|..+...++++++.++  +.+-.++..+.+++ .+|||.++|++++  ||+  ..+.| ..+.+++.+||+
T Consensus         4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l~   76 (76)
T PF13192_consen    4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELLE   76 (76)
T ss_dssp             EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHHH
T ss_pred             EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHhC
Confidence            3468889999999999999999983  77777777666666 9999999999944  774  46888 678899988874

...

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.41  E-value=1.5e-06  Score=66.93  Aligned_cols=100  Identities=15%  Similarity=0.196  Sum_probs=81.0

Q ss_pred             eEeeccccccccccCCc-cEEEEEeeCCC----ch--HHHHHHHHHHHHh--cCCcceEEEEEEEcCCcccccchhhhcc
Q 015368          268 VVTLTIHNAQFVFQDPR-KQLWLFAPAYG----SD--KVILTFEEVAKAL--KGKVNMLLHVYVEMNSEGVGRRVSQEFG  338 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~-~~~i~f~~~~~----~~--~~~~~~~~vA~~~--~~~~~~i~f~~vd~~~~~~~~~l~~~~~  338 (408)
                      +..+|.+||.+...+.. +++++|.++..    |+  ...+.+.++|.++  .++   +.|+.+|++.+   +.+++.||
T Consensus        11 v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~---v~~~kVD~d~~---~~La~~~~   84 (120)
T cd03065          11 VIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG---IGFGLVDSKKD---AKVAKKLG   84 (120)
T ss_pred             eeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC---CEEEEEeCCCC---HHHHHHcC
Confidence            67788899997666655 88888888765    66  6677788999998  677   99999999874   59999999


Q ss_pred             CCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          339 VSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       339 i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      +..  .|.++++.. |+...+.|..+.+.|.+||+++.
T Consensus        85 I~~--iPTl~lfk~-G~~v~~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          85 LDE--EDSIYVFKD-DEVIEYDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             Ccc--ccEEEEEEC-CEEEEeeCCCCHHHHHHHHHHHh
Confidence            954  688888874 44445889999999999999875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.40  E-value=1.7e-06  Score=65.39  Aligned_cols=97  Identities=25%  Similarity=0.243  Sum_probs=75.8

Q ss_pred             eEeeccccccccccCCc-cEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVFQDPR-KQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~-~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +.+++..++........ ++++ ++.+++. |....+.|.++|+++.++   +.|+.+|++.   +..+++.+++.  ..
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~---~~~~~~~~~i~--~~   73 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADV---HQSLAQQYGVR--GF   73 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcc---hHHHHHHCCCC--cc
Confidence            45677788777654444 4444 4555665 889999999999999988   9999999876   45788999995  37


Q ss_pred             cEEEEEccC-CccccCCCCCChHHHHHHH
Q 015368          345 RVIAYSARD-AKKYVLNGELTLSSIKSFG  372 (408)
Q Consensus       345 p~i~i~~~~-~~~y~~~~~~~~~~i~~Fi  372 (408)
                      |.+++++.+ ...+.+.|..+.++|.+|+
T Consensus        74 P~~~~~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          74 PTIKVFGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             CEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence            888888763 5667789999999999996

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=98.39  E-value=2.3e-06  Score=65.31  Aligned_cols=99  Identities=17%  Similarity=0.155  Sum_probs=77.0

Q ss_pred             CceEeecccccccc---ccCCc-cEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchh-hhccC
Q 015368          266 PLVVTLTIHNAQFV---FQDPR-KQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVS-QEFGV  339 (408)
Q Consensus       266 p~v~~lt~~~~~~~---~~~~~-~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~-~~~~i  339 (408)
                      +.+.+++..|+.+.   ..... .++.+|.+|+. |+...+.+.++|+++++.   +.|+.+|++.+   ..++ +.+++
T Consensus         9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~---~~l~~~~~~I   82 (113)
T cd03006           9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP---QGKCRKQKHF   82 (113)
T ss_pred             CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC---hHHHHHhcCC
Confidence            45789999998875   34444 44556778887 899999999999999988   99999999864   3677 58998


Q ss_pred             CCCCCcEEEEEccCCccccCCCCCChHHHHHHH
Q 015368          340 SGNAPRVIAYSARDAKKYVLNGELTLSSIKSFG  372 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi  372 (408)
                      ..  .|.+.++..+.....|.|..+.+.|..|+
T Consensus        83 ~~--~PTl~lf~~g~~~~~y~G~~~~~~i~~~~  113 (113)
T cd03006          83 FY--FPVIHLYYRSRGPIEYKGPMRAPYMEKFV  113 (113)
T ss_pred             cc--cCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence            43  67888886555556688999999998874

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.36  E-value=1.5e-06  Score=65.45  Aligned_cols=100  Identities=23%  Similarity=0.285  Sum_probs=75.7

Q ss_pred             eEeeccccccccccCCccEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcE
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV  346 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~  346 (408)
                      +.+++.+++......+..++.++.+|+. |+...+.++++|+++++..+.+.|+.+|++..   ..+++.+++.  ..|.
T Consensus         2 ~~~l~~~~f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~v~--~~Pt   76 (102)
T cd03005           2 VLELTEDNFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH---RELCSEFQVR--GYPT   76 (102)
T ss_pred             eeECCHHHHHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC---hhhHhhcCCC--cCCE
Confidence            4567888888877666444556667777 89999999999999987101299999998864   4778899984  4688


Q ss_pred             EEEEccCCccccCCCCCChHHHHHHH
Q 015368          347 IAYSARDAKKYVLNGELTLSSIKSFG  372 (408)
Q Consensus       347 i~i~~~~~~~y~~~~~~~~~~i~~Fi  372 (408)
                      ++++..+.....+.|..+.++|.+||
T Consensus        77 ~~~~~~g~~~~~~~G~~~~~~l~~~i  102 (102)
T cd03005          77 LLLFKDGEKVDKYKGTRDLDSLKEFV  102 (102)
T ss_pred             EEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence            88886544556688999999998885

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.36  E-value=5.7e-06  Score=71.65  Aligned_cols=86  Identities=15%  Similarity=0.144  Sum_probs=70.3

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-----------cHhHHHHcCCCcCcEEEEEe-C-CeE
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------EKDLAKEYNILAYPTLYLFV-A-GVR  139 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-----------~~~~~~~~~i~~~Pt~~~~~-~-g~~  139 (408)
                      ++.-|+.||.+.|++|+++.|.++.++++++  +.+..|++|.           +...++++||..+|++++++ + |+.
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~  220 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV  220 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence            4689999999999999999999999999994  7777777764           23467899999999999998 4 334


Q ss_pred             eEEeeCCCCHHHHHHHHHhHh
Q 015368          140 QFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       140 ~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      .-.-.|.++.++|.+-+....
T Consensus       221 ~pv~~G~iS~deL~~Ri~~v~  241 (248)
T PRK13703        221 RPLSYGFITQDDLAKRFLNVS  241 (248)
T ss_pred             EEEeeccCCHHHHHHHHHHHH
Confidence            444469999999988776554

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.35  E-value=1.9e-05  Score=69.90  Aligned_cols=198  Identities=13%  Similarity=0.146  Sum_probs=124.8

Q ss_pred             cccccChhHHHHHhccCCeEEEEEecCCCCc--------CHHHHHHH-hcc--CCceeEEEe---cCHhHHhhcCCCCCC
Q 015368          164 TYSITTTDEAERILTVESKLVLGFLHDLEGM--------ESEELAAA-SKL--HSDVNFYQT---TSADVAEFFHIHPKS  229 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~--------~~~~~~~~-a~~--~~~~~f~~~---~~~~l~~~~~i~~~~  229 (408)
                      +..+ +..++.+.++..+..++.|+.+..+.        ..+.+..+ |+.  ...+.|+.+   .+..+++++|+..  
T Consensus        36 Vi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E--  112 (383)
T PF01216_consen   36 VIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE--  112 (383)
T ss_dssp             CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S--
T ss_pred             eEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc--
Confidence            4455 56788889999999999888775543        11223443 343  466778876   6778999999995  


Q ss_pred             CCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeeccccccccccC-C-ccEEEEEeeCCCchHHHHHHHHHH
Q 015368          230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQD-P-RKQLWLFAPAYGSDKVILTFEEVA  307 (408)
Q Consensus       230 ~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~-~-~~~~i~f~~~~~~~~~~~~~~~vA  307 (408)
                       .++|.+|+.+  ..+.|.|.++.+-+..||..-....|..++...-.+.+.. . .+.++-|....+ ..+...|.+.|
T Consensus       113 -~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~-s~~yk~FeeAA  188 (383)
T PF01216_consen  113 -EGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSED-SEHYKEFEEAA  188 (383)
T ss_dssp             -TTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTT-SHHHHHHHHHH
T ss_pred             -cCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCC-cHHHHHHHHHH
Confidence             7999999965  7999999999999999998866666777766543333332 2 255665555544 34778999999


Q ss_pred             HHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCcccc-CCCCCChHHHHHHHHHHhcCcc
Q 015368          308 KALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYV-LNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       308 ~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~y~-~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      ..|...   +.|.-+-      .+.+++.+|+.   +--+-++.+ -...-. ...+.+.++|.+||++...-.+
T Consensus       189 e~F~p~---IkFfAtf------d~~vAk~L~lK---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptl  251 (383)
T PF01216_consen  189 EHFQPY---IKFFATF------DKKVAKKLGLK---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTL  251 (383)
T ss_dssp             HHCTTT---SEEEEE-------SHHHHHHHT-S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SE
T ss_pred             HhhcCc---eeEEEEe------cchhhhhcCcc---ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHh
Confidence            999998   8887664      35778888884   233445544 333333 3447788999999998877766

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.33  E-value=3.5e-06  Score=60.90  Aligned_cols=109  Identities=16%  Similarity=0.136  Sum_probs=82.1

Q ss_pred             CceEeeccccccccccCCc--cEEEEEeeCCC--chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc-ccccchhhhccCC
Q 015368          266 PLVVTLTIHNAQFVFQDPR--KQLWLFAPAYG--SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE-GVGRRVSQEFGVS  340 (408)
Q Consensus       266 p~v~~lt~~~~~~~~~~~~--~~~i~f~~~~~--~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~-~~~~~l~~~~~i~  340 (408)
                      |.++.++.++...+.....  -+++.|....+  --+++..++++|+++... +++.|+|+|-++. -.....-+.|||+
T Consensus         1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~n-p~LsiIWIDPD~FPllv~yWektF~ID   79 (120)
T cd03074           1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDN-PDLSIIWIDPDDFPLLVPYWEKTFGID   79 (120)
T ss_pred             CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcC-CCceEEEECCccCchhhHHHHhhcCcc
Confidence            4567778888777776555  56777876654  568999999999999854 4599999998876 2234455788998


Q ss_pred             CCCCcEEEEEcc---CCccccCCC---CCChHHHHHHHHHHh
Q 015368          341 GNAPRVIAYSAR---DAKKYVLNG---ELTLSSIKSFGEEFL  376 (408)
Q Consensus       341 ~~~~p~i~i~~~---~~~~y~~~~---~~~~~~i~~Fi~~~~  376 (408)
                      -. .|.|.+.+.   .+..|.+++   ..+.++++.||++++
T Consensus        80 l~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL  120 (120)
T cd03074          80 LF-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL  120 (120)
T ss_pred             cC-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence            76 578887776   566777765   378899999999975

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.31  E-value=1.6e-06  Score=62.80  Aligned_cols=58  Identities=21%  Similarity=0.354  Sum_probs=44.9

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-----hHHHHcCCCcCcEEEEEeCCe
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      ++.|+++||++|+.+.+.+.++.  ....+.+..|+.+++.     .+.+.+++.++|+++  -+|+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~   63 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGK   63 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCE
Confidence            47899999999999999999876  3334778888876543     266778999999983  4674

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.31  E-value=4e-06  Score=63.07  Aligned_cols=99  Identities=26%  Similarity=0.361  Sum_probs=75.2

Q ss_pred             eccccccccccCCccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEE
Q 015368          271 LTIHNAQFVFQDPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIA  348 (408)
Q Consensus       271 lt~~~~~~~~~~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~  348 (408)
                      |+.+++......+.+.++. +.+++. |+.....+.++|..+.+. +++.|+.+|++..   ..+++.|++.  ..|.++
T Consensus         1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~---~~~~~~~~i~--~~P~~~   74 (102)
T TIGR01126         1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAE---KDLASRFGVS--GFPTIK   74 (102)
T ss_pred             CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccch---HHHHHhCCCC--cCCEEE
Confidence            3556666666655565554 455665 888888999999999872 1399999998764   5788899994  478988


Q ss_pred             EEccCCccccCCCCCChHHHHHHHHHH
Q 015368          349 YSARDAKKYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       349 i~~~~~~~y~~~~~~~~~~i~~Fi~~~  375 (408)
                      ++..++..+.+.|..+.++|..|+++.
T Consensus        75 ~~~~~~~~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        75 FFPKGKKPVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             EecCCCcceeecCCCCHHHHHHHHHhc
Confidence            888755577789999999999999874

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.30  E-value=3.1e-06  Score=66.22  Aligned_cols=75  Identities=19%  Similarity=0.315  Sum_probs=49.7

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHc---CCCcCcEEEEEe-CCeEeEEeeCCC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFV-AGVRQFQFFGER  147 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~---~i~~~Pt~~~~~-~g~~~~~~~g~~  147 (408)
                      ..+..++-|..+||+.|+...|.+.++++... ++.+-.+..|++.++..+|   |...+|++++++ +|++..++ |++
T Consensus        40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~w-ger  117 (129)
T PF14595_consen   40 QKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRW-GER  117 (129)
T ss_dssp             -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEE-ESS
T ss_pred             CCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEE-cCC
Confidence            34567888999999999999999999999865 6777777777888777655   678899999998 67666665 444


Q ss_pred             C
Q 015368          148 T  148 (408)
Q Consensus       148 ~  148 (408)
                      .
T Consensus       118 P  118 (129)
T PF14595_consen  118 P  118 (129)
T ss_dssp             -
T ss_pred             C
Confidence            3

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.29  E-value=2.7e-06  Score=68.75  Aligned_cols=89  Identities=25%  Similarity=0.265  Sum_probs=78.7

Q ss_pred             CcEEcC-hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSLN-GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      ...++. ..+|-+...+..-|++.||.+.-..|+-+-..++.+|+.+- ...|++||....|-++.+++|..+|++.+|.
T Consensus        67 ~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~~PFlv~kL~IkVLP~v~l~k  145 (211)
T KOG1672|consen   67 EYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEKAPFLVTKLNIKVLPTVALFK  145 (211)
T ss_pred             eEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEecccCceeeeeeeeeEeeeEEEEE
Confidence            344554 67777777778889999999999999999999999999876 6899999999999999999999999999999


Q ss_pred             CCeEeEEeeCC
Q 015368          136 AGVRQFQFFGE  146 (408)
Q Consensus       136 ~g~~~~~~~g~  146 (408)
                      +|..+.++.|.
T Consensus       146 ~g~~~D~iVGF  156 (211)
T KOG1672|consen  146 NGKTVDYVVGF  156 (211)
T ss_pred             cCEEEEEEeeH
Confidence            99888888774

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.27  E-value=6.5e-06  Score=61.89  Aligned_cols=97  Identities=24%  Similarity=0.190  Sum_probs=76.9

Q ss_pred             eEeeccccccccccCCccEEEEEeeCCC-chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcccccchhhhccCCCCCCc
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR  345 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p  345 (408)
                      +.+++.+++..+... ..++.++.+|+. |+...+.+.++|..+.+ .   +.|+.+|++..   +.+++.+++.  ..|
T Consensus         3 v~~l~~~~f~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~---v~~~~vd~~~~---~~~~~~~~i~--~~P   73 (101)
T cd02994           3 VVELTDSNWTLVLEG-EWMIEFYAPWCPACQQLQPEWEEFADWSDDLG---INVAKVDVTQE---PGLSGRFFVT--ALP   73 (101)
T ss_pred             eEEcChhhHHHHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHhhccCC---eEEEEEEccCC---HhHHHHcCCc--ccC
Confidence            567888898887754 366667788887 99999999999998764 4   99999999864   4788899994  367


Q ss_pred             EEEEEccCCccccCCCCCChHHHHHHHHH
Q 015368          346 VIAYSARDAKKYVLNGELTLSSIKSFGEE  374 (408)
Q Consensus       346 ~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~  374 (408)
                      .++++.. |+...+.|..+.++|.+|+++
T Consensus        74 t~~~~~~-g~~~~~~G~~~~~~l~~~i~~  101 (101)
T cd02994          74 TIYHAKD-GVFRRYQGPRDKEDLISFIEE  101 (101)
T ss_pred             EEEEeCC-CCEEEecCCCCHHHHHHHHhC
Confidence            8877754 555668899999999999873

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.26  E-value=8.4e-06  Score=62.14  Aligned_cols=67  Identities=21%  Similarity=0.346  Sum_probs=47.9

Q ss_pred             cCCCcEEEEEec-------CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-------hHHH--HcCCCcCcEEEEE
Q 015368           71 GKNRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-------DLAK--EYNILAYPTLYLF  134 (408)
Q Consensus        71 ~~~~~~~v~f~a-------~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-------~~~~--~~~i~~~Pt~~~~  134 (408)
                      .++++++|+|++       +|||.|....|.+++.-....++..++.|.+...+       .+-+  ++++.++||++-+
T Consensus        17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~   96 (119)
T PF06110_consen   17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRW   96 (119)
T ss_dssp             TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEEC
T ss_pred             cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEE
Confidence            456899999997       59999999999999988887668888888774322       2333  5999999999999


Q ss_pred             eCC
Q 015368          135 VAG  137 (408)
Q Consensus       135 ~~g  137 (408)
                      ..|
T Consensus        97 ~~~   99 (119)
T PF06110_consen   97 ETG   99 (119)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            866

; PDB: 1V9W_A 1WOU_A.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.1e-05  Score=70.31  Aligned_cols=112  Identities=22%  Similarity=0.283  Sum_probs=88.0

Q ss_pred             ccCCCcEEcChhhHHHHHcCC---CcEEEEEecC----CChhHHhhhHHHHHHHHHhcC--------CcEEEEEeCcccH
Q 015368           53 LYAKDVVSLNGKNFSEFMGKN---RNVMVMFYAN----WCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLEK  117 (408)
Q Consensus        53 ~~~~~~~~l~~~~~~~~~~~~---~~~~v~f~a~----wC~~C~~~~p~~~~~~~~~~~--------~v~~~~v~~~~~~  117 (408)
                      .+...++.++++.|...+...   =.++|.|.|.    .|.-|+++..+++-++..+..        ++-|..||.++.+
T Consensus        37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p  116 (331)
T KOG2603|consen   37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP  116 (331)
T ss_pred             cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence            355789999999999988532   2478889884    699999999999999998754        6889999999999


Q ss_pred             hHHHHcCCCcCcEEEEEe--CCeEe--EE---eeCCCCHHHHHHHHHhHhCCCc
Q 015368          118 DLAKEYNILAYPTLYLFV--AGVRQ--FQ---FFGERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       118 ~~~~~~~i~~~Pt~~~~~--~g~~~--~~---~~g~~~~~~l~~~i~~~~~~~~  164 (408)
                      ++.++++++..|++++|.  .|+..  ..   ++-...+|++.+|+++...-.+
T Consensus       117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v  170 (331)
T KOG2603|consen  117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV  170 (331)
T ss_pred             HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence            999999999999999995  34221  11   1212348999999988874333

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=98.25  E-value=8.4e-06  Score=59.08  Aligned_cols=77  Identities=21%  Similarity=0.277  Sum_probs=58.0

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH----hHHHHcC--CCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYN--ILAYPTLYLFVAGVRQFQFFGERTR  149 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~  149 (408)
                      -++.|+.+||++|++....++++..+++ ++.+..+|+++++    ++.+..+  +.++|+++  .+|+.+    |  ..
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~-~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i----g--g~   72 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD-DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI----G--GC   72 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc-CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE----c--CH
Confidence            3678999999999999999999998763 7888888888653    4555444  47899975  477442    3  44


Q ss_pred             HHHHHHHHhHhC
Q 015368          150 DVISAWVREKMT  161 (408)
Q Consensus       150 ~~l~~~i~~~~~  161 (408)
                      +++.++++++++
T Consensus        73 ~~~~~~~~~~~~   84 (85)
T PRK11200         73 TDFEAYVKENLG   84 (85)
T ss_pred             HHHHHHHHHhcc
Confidence            778888877653

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=5.9e-06  Score=64.69  Aligned_cols=104  Identities=16%  Similarity=0.181  Sum_probs=81.2

Q ss_pred             CceEeeccccccc-cccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          266 PLVVTLTIHNAQF-VFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       266 p~v~~lt~~~~~~-~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      ..+...+.+.+.. +.++..|+++ |++.|++ |+...+.+.+++.++.++   +.|+.+|.++.   .++...|+|.  
T Consensus        43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~---~ela~~Y~I~--  114 (150)
T KOG0910|consen   43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH---PELAEDYEIS--  114 (150)
T ss_pred             ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc---cchHhhccee--
Confidence            3455555555554 3444557666 5567887 999999999999999999   99999999874   5889999994  


Q ss_pred             CCcEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          343 APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       343 ~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      ..|.++++..+.++-.+-|..+.+.+.+||++++.
T Consensus       115 avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  115 AVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             eeeEEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence            47899988865555567888999999999999864

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.20  E-value=1.6e-05  Score=59.19  Aligned_cols=88  Identities=18%  Similarity=0.335  Sum_probs=72.5

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC-eEeEE
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQ  142 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~  142 (408)
                      +.++..+..+++++|-|+.++|.   .....|.++|+.+++.+.|+.+.   +.++++++++.. |++.+|+++ .....
T Consensus         8 ~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~~~~~   80 (97)
T cd02981           8 EELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEEEPVE   80 (97)
T ss_pred             HHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeCCcccCCcc
Confidence            44566677889999999999987   47788999999998889998887   567888888764 899999853 45677


Q ss_pred             eeCCCCHHHHHHHHHh
Q 015368          143 FFGERTRDVISAWVRE  158 (408)
Q Consensus       143 ~~g~~~~~~l~~~i~~  158 (408)
                      |.|..+.+.|.+||..
T Consensus        81 y~g~~~~~~l~~fi~~   96 (97)
T cd02981          81 YDGEFTEESLVEFIKD   96 (97)
T ss_pred             CCCCCCHHHHHHHHHh
Confidence            9999999999999964

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.17  E-value=1.4e-05  Score=60.41  Aligned_cols=98  Identities=23%  Similarity=0.330  Sum_probs=74.1

Q ss_pred             eEeeccccccccccCC-ccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVFQDP-RKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~-~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +.+++.+++....... .+.++ ++.+++. |+.....+.++|+.+.+. .++.|+.+|++..    .++..+++  ...
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~----~~~~~~~~--~~~   74 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN----DVPSEFVV--DGF   74 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch----hhhhhccC--CCC
Confidence            5688899988876554 45544 5567776 899999999999998762 1299999998753    45667777  357


Q ss_pred             cEEEEEccCC--ccccCCCCCChHHHHHHH
Q 015368          345 RVIAYSARDA--KKYVLNGELTLSSIKSFG  372 (408)
Q Consensus       345 p~i~i~~~~~--~~y~~~~~~~~~~i~~Fi  372 (408)
                      |.++++..++  ....+.|..+.+.|.+||
T Consensus        75 Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi  104 (104)
T cd02995          75 PTILFFPAGDKSNPIKYEGDRTLEDLIKFI  104 (104)
T ss_pred             CEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence            8888887643  566789999999999886

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.17  E-value=1.9e-05  Score=59.00  Aligned_cols=89  Identities=12%  Similarity=0.234  Sum_probs=70.6

Q ss_pred             ChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHh-cc--CCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeec
Q 015368          169 TTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KL--HSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL  239 (408)
Q Consensus       169 ~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~--~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~  239 (408)
                      +..++...+.+.+.+++.|+.+||..+   .+.+..++ .+  ...+.|+.+   .+..+++++++.   +.|++++|++
T Consensus         4 ~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~---~~Pt~~~~~~   80 (101)
T cd02961           4 TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVR---GYPTIKLFPN   80 (101)
T ss_pred             cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCC---CCCEEEEEcC
Confidence            456888888888799999999999864   44455655 45  477888776   346899999998   5999999988


Q ss_pred             CCCcccccCCcCCHHHHHHHH
Q 015368          240 EAGKATPFRHQFTRLAIANFV  260 (408)
Q Consensus       240 ~~~~~~~y~g~~~~~~i~~fi  260 (408)
                      ++.....|.|..+.+++.+|+
T Consensus        81 ~~~~~~~~~g~~~~~~i~~~~  101 (101)
T cd02961          81 GSKEPVKYEGPRTLESLVEFI  101 (101)
T ss_pred             CCcccccCCCCcCHHHHHhhC
Confidence            756788899998889998885

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PRK09381 trxA thioredoxin; Provisional

Probab=98.17  E-value=1.5e-05  Score=60.78  Aligned_cols=101  Identities=17%  Similarity=0.255  Sum_probs=77.4

Q ss_pred             eEeeccccccc-cccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQF-VFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~-~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +.+++.+++.. +...+.++++ ++.+++. |....+.+++++.++.++   +.|+.+|++..   ..+++.|++.  ..
T Consensus         5 v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~---~~~~~~~~v~--~~   76 (109)
T PRK09381          5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN---PGTAPKYGIR--GI   76 (109)
T ss_pred             ceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCC---hhHHHhCCCC--cC
Confidence            45667777764 3444445555 5556676 899999999999999988   99999999864   4677889984  47


Q ss_pred             cEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      |.+++++.+...+.+.|..+.++|..|++..+
T Consensus        77 Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~  108 (109)
T PRK09381         77 PTLLLFKNGEVAATKVGALSKGQLKEFLDANL  108 (109)
T ss_pred             CEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence            88888875555667888889999999998765

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=9.5e-06  Score=60.12  Aligned_cols=73  Identities=23%  Similarity=0.370  Sum_probs=57.8

Q ss_pred             hhHHHHH---cCCCcEEEEEec--------CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-------HhHHHHcCC
Q 015368           64 KNFSEFM---GKNRNVMVMFYA--------NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------KDLAKEYNI  125 (408)
Q Consensus        64 ~~~~~~~---~~~~~~~v~f~a--------~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-------~~~~~~~~i  125 (408)
                      ++|++.+   .+++.++|+|++        +|||.|.+..|.+.+.-+....++.|+.|++.+-       -.+-...++
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~   92 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI   92 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc
Confidence            4565544   356679999998        6999999999999999997777999999998643       235556677


Q ss_pred             -CcCcEEEEEeC
Q 015368          126 -LAYPTLYLFVA  136 (408)
Q Consensus       126 -~~~Pt~~~~~~  136 (408)
                       .++||+.=+.+
T Consensus        93 lt~vPTLlrw~~  104 (128)
T KOG3425|consen   93 LTAVPTLLRWKR  104 (128)
T ss_pred             eeecceeeEEcC
Confidence             89999988874

>PHA02278 thioredoxin-like protein

Probab=98.15  E-value=1.8e-05  Score=59.40  Aligned_cols=88  Identities=10%  Similarity=0.129  Sum_probs=66.2

Q ss_pred             cChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHh-ccCCceeEEEe--c-----CHhHHhhcCCCCCCCCCeEEE
Q 015368          168 TTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT--T-----SADVAEFFHIHPKSKRPALIF  236 (408)
Q Consensus       168 ~~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~--~-----~~~l~~~~~i~~~~~~p~l~~  236 (408)
                      ++.+++.+.+..+++++|.|+++||+++   .+.+..++ +......|..+  .     ..++++++++.   +.|++++
T Consensus         2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~---~iPT~i~   78 (103)
T PHA02278          2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIM---STPVLIG   78 (103)
T ss_pred             CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCc---cccEEEE
Confidence            4678888888888999999999999984   45566666 33344555543  2     15799999999   5999999


Q ss_pred             eecCCCcccccCCcCCHHHHHHH
Q 015368          237 LHLEAGKATPFRHQFTRLAIANF  259 (408)
Q Consensus       237 ~~~~~~~~~~y~g~~~~~~i~~f  259 (408)
                      |+.+. ......|..+.+.+.+|
T Consensus        79 fk~G~-~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         79 YKDGQ-LVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             EECCE-EEEEEeCCCCHHHHHhh
Confidence            99763 44567787777888776

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.15  E-value=2.1e-05  Score=60.03  Aligned_cols=93  Identities=11%  Similarity=0.178  Sum_probs=67.5

Q ss_pred             cccccChhHHHHHhc---cCCeEEEEEecCCCCcC---HHHHHHHh-ccCC-ceeEEEec----CHhHHh-hcCCCCCCC
Q 015368          164 TYSITTTDEAERILT---VESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQTT----SADVAE-FFHIHPKSK  230 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~---~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~~----~~~l~~-~~~i~~~~~  230 (408)
                      +.++ +.++++.+..   .++++++.|+.+||.++   .+.+.+++ .+.+ .+.++.+.    +..++. .+++.   +
T Consensus         3 v~~~-~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~---~   78 (109)
T cd02993           3 VVTL-SRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLK---S   78 (109)
T ss_pred             ceec-cHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCC---c
Confidence            3444 4467777763   46789999999999874   44566666 4444 47776642    345665 58998   5


Q ss_pred             CCeEEEeecCCCcccccCCc-CCHHHHHHHH
Q 015368          231 RPALIFLHLEAGKATPFRHQ-FTRLAIANFV  260 (408)
Q Consensus       231 ~p~l~~~~~~~~~~~~y~g~-~~~~~i~~fi  260 (408)
                      +|++++|..+......|+|. .+.++|.+||
T Consensus        79 ~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          79 FPTILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             CCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            99999999877678899995 8999999986

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.14  E-value=3e-05  Score=59.10  Aligned_cols=101  Identities=13%  Similarity=0.090  Sum_probs=81.4

Q ss_pred             EEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHH---hcCCcEEEEEeCcccHhHHHHcCCCc--CcEEEE
Q 015368           59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM---LKGEADLVMVDAYLEKDLAKEYNILA--YPTLYL  133 (408)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~---~~~~v~~~~v~~~~~~~~~~~~~i~~--~Pt~~~  133 (408)
                      .++|.++.......+.+..+.|+.+  ..-....+.+.++|++   +++++.|+.+|.++.....+.||++.  .|.+.+
T Consensus         2 ~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i   79 (111)
T cd03072           2 REITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAI   79 (111)
T ss_pred             cccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEE
Confidence            4577788888888887877777722  3346788899999999   99999999999999888999999997  899999


Q ss_pred             Ee-CCeEeEE-eeCCCCHHHHHHHHHhHhC
Q 015368          134 FV-AGVRQFQ-FFGERTRDVISAWVREKMT  161 (408)
Q Consensus       134 ~~-~g~~~~~-~~g~~~~~~l~~~i~~~~~  161 (408)
                      .. ++..... +.+..+.+.|.+|++..+.
T Consensus        80 ~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~  109 (111)
T cd03072          80 DSFRHMYLFPDFEDVYVPGKLKQFVLDLHS  109 (111)
T ss_pred             EcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence            98 3312333 5688999999999988763

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>PRK10996 thioredoxin 2; Provisional

Probab=98.14  E-value=1.3e-05  Score=64.09  Aligned_cols=100  Identities=25%  Similarity=0.303  Sum_probs=76.7

Q ss_pred             eEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCc
Q 015368          268 VVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR  345 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p  345 (408)
                      +.+++..++..+...+.++++ ++.+|+. ++.....|.++++++.++   +.|+.+|.+..   +.+.+.|++.  ..|
T Consensus        37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~---~~l~~~~~V~--~~P  108 (139)
T PRK10996         37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAE---RELSARFRIR--SIP  108 (139)
T ss_pred             CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCC---HHHHHhcCCC--ccC
Confidence            345666777776666665544 5556676 888889999999999988   99999998764   5788999994  368


Q ss_pred             EEEEEccCCccccCCCCCChHHHHHHHHHH
Q 015368          346 VIAYSARDAKKYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       346 ~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~  375 (408)
                      .+++++.+.....+.|..+.+.+.+|+++.
T Consensus       109 tlii~~~G~~v~~~~G~~~~e~l~~~l~~~  138 (139)
T PRK10996        109 TIMIFKNGQVVDMLNGAVPKAPFDSWLNEA  138 (139)
T ss_pred             EEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence            888887544444578889999999999875

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.13  E-value=1.9e-05  Score=59.72  Aligned_cols=98  Identities=20%  Similarity=0.350  Sum_probs=75.0

Q ss_pred             eEeeccccccccccCCc-cEEE-EEeeCCC-chHHHHHHHHHHHHhc--CCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          268 VVTLTIHNAQFVFQDPR-KQLW-LFAPAYG-SDKVILTFEEVAKALK--GKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~-~~~i-~f~~~~~-~~~~~~~~~~vA~~~~--~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      +.+++.+++........ +.++ ++.+++. |.+..+.+.++++++.  ++   +.|+.+|++..  ...+++.+++.  
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~---~~~~~id~~~~--~~~~~~~~~i~--   74 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDD---VVIAKVDADEA--NKDLAKKYGVS--   74 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCC---EEEEEEECCCc--chhhHHhCCCC--
Confidence            45778888887765544 5555 4555665 8888999999999987  45   99999998872  24788999995  


Q ss_pred             CCcEEEEEccC-CccccCCCCCChHHHHHHH
Q 015368          343 APRVIAYSARD-AKKYVLNGELTLSSIKSFG  372 (408)
Q Consensus       343 ~~p~i~i~~~~-~~~y~~~~~~~~~~i~~Fi  372 (408)
                      ..|.++++..+ ...+.+.|..+.++|.+|+
T Consensus        75 ~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i  105 (105)
T cd02998          75 GFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV  105 (105)
T ss_pred             CcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence            36888888764 4667788999999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=98.12  E-value=1.9e-05  Score=68.68  Aligned_cols=81  Identities=14%  Similarity=0.259  Sum_probs=60.9

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEe------------------C--------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD------------------A--------------------  113 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~------------------~--------------------  113 (408)
                      +++.+++.|..+.||+|+++.+++.++.+.   ++.+..+.                  |                    
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~---~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~  182 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL---GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA  182 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC---CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence            356789999999999999999998877542   23332211                  1                    


Q ss_pred             ------cccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          114 ------YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       114 ------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                            +++.++++++||+|+|+++ +.+|+.   ..|..+.++|.++|.+.
T Consensus       183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~---~~G~~~~~~L~~~l~~~  230 (232)
T PRK10877        183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTL---VPGYQGPKEMKAFLDEH  230 (232)
T ss_pred             cccchHHHhHHHHHHcCCccccEEE-EcCCeE---eeCCCCHHHHHHHHHHc
Confidence                  1235678999999999998 778843   48999999999999754

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=98.08  E-value=2.9e-05  Score=54.24  Aligned_cols=67  Identities=13%  Similarity=0.165  Sum_probs=46.8

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHc----CCCcCcEEEEEeCCeEeEEeeCCCCHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY----NILAYPTLYLFVAGVRQFQFFGERTRDVI  152 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~----~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l  152 (408)
                      ++.|+++||++|....+.+.+.      ++.+..++++.++...+.+    ++.++|++++  +|+   ...| .+.+.+
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~---~i~g-~~~~~l   69 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE---HLSG-FRPDKL   69 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE---EEec-CCHHHH
Confidence            5789999999999988777652      5777788887765544433    6889999865  452   3333 466666


Q ss_pred             HHH
Q 015368          153 SAW  155 (408)
Q Consensus       153 ~~~  155 (408)
                      .++
T Consensus        70 ~~~   72 (73)
T cd02976          70 RAL   72 (73)
T ss_pred             Hhh
Confidence            655

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=98.07  E-value=2e-05  Score=67.68  Aligned_cols=103  Identities=19%  Similarity=0.274  Sum_probs=80.3

Q ss_pred             ceEeeccccccccccC-----CccE-EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccC
Q 015368          267 LVVTLTIHNAQFVFQD-----PRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV  339 (408)
Q Consensus       267 ~v~~lt~~~~~~~~~~-----~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i  339 (408)
                      .+.+++..++......     ..++ +.++.+|+. |+...+.+.++|+++++.   +.|+.+|++.+   ..+++.|++
T Consensus        31 ~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~---~~l~~~~~I  104 (224)
T PTZ00443         31 ALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRA---LNLAKRFAI  104 (224)
T ss_pred             CcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCccc---HHHHHHcCC
Confidence            4778888888876542     2344 446667877 899999999999999988   99999998864   478899999


Q ss_pred             CCCCCcEEEEEccCCcccc-CCCCCChHHHHHHHHHHhcC
Q 015368          340 SGNAPRVIAYSARDAKKYV-LNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~~~y~-~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      ..  .|.+++++. |+.+. ..|..+.++|.+|+.+-...
T Consensus       105 ~~--~PTl~~f~~-G~~v~~~~G~~s~e~L~~fi~~~~~~  141 (224)
T PTZ00443        105 KG--YPTLLLFDK-GKMYQYEGGDRSTEKLAAFALGDFKK  141 (224)
T ss_pred             Cc--CCEEEEEEC-CEEEEeeCCCCCHHHHHHHHHHHHHh
Confidence            53  688888874 55554 46788999999999888755

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.07  E-value=3.3e-05  Score=57.37  Aligned_cols=85  Identities=9%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             HHHHh-cc-CCeEEEEEecCCCCcCH---HHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCCCc
Q 015368          173 AERIL-TV-ESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGK  243 (408)
Q Consensus       173 ~~~~~-~~-~~~~vi~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~~~  243 (408)
                      +++.+ +. +.+++|.|+++||.++.   +.+..++ .+.+.+.++.+   ....+++++++.   ++|++++|+.+ ..
T Consensus         3 f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~---~~Pt~~~~~~g-~~   78 (96)
T cd02956           3 FQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQ---ALPTVYLFAAG-QP   78 (96)
T ss_pred             hHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCC---CCCEEEEEeCC-EE
Confidence            44444 33 56899999999998844   4455555 45556666654   677899999999   69999999844 34


Q ss_pred             ccccCCcCCHHHHHHHHh
Q 015368          244 ATPFRHQFTRLAIANFVT  261 (408)
Q Consensus       244 ~~~y~g~~~~~~i~~fi~  261 (408)
                      ...+.|..+.++|..|++
T Consensus        79 ~~~~~g~~~~~~l~~~l~   96 (96)
T cd02956          79 VDGFQGAQPEEQLRQMLD   96 (96)
T ss_pred             eeeecCCCCHHHHHHHhC
Confidence            557899999999999974

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.05  E-value=3e-05  Score=58.60  Aligned_cols=88  Identities=11%  Similarity=0.102  Sum_probs=66.9

Q ss_pred             hHHHHHhccCCeEEEEEecCCCCcCHHHHH------HHh-ccCCceeEEEec-------CHhHHhhcCCCCCCCCCeEEE
Q 015368          171 DEAERILTVESKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQTT-------SADVAEFFHIHPKSKRPALIF  236 (408)
Q Consensus       171 ~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~~-------~~~l~~~~~i~~~~~~p~l~~  236 (408)
                      +.+.+.++.+++++|.|+.+||.++.....      .++ .+.+++.+..+.       ...+++++++.   ++|++++
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~---~~Pti~~   78 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVF---GPPTYLF   78 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCC---CCCEEEE
Confidence            567778888899999999999998655432      333 344467766542       35788999998   5999999


Q ss_pred             eec-CCCcccccCCcCCHHHHHHHHh
Q 015368          237 LHL-EAGKATPFRHQFTRLAIANFVT  261 (408)
Q Consensus       237 ~~~-~~~~~~~y~g~~~~~~i~~fi~  261 (408)
                      |++ ++.....+.|..+.+++.+||+
T Consensus        79 ~~~~~g~~~~~~~G~~~~~~l~~~l~  104 (104)
T cd02953          79 YGPGGEPEPLRLPGFLTADEFLEALE  104 (104)
T ss_pred             ECCCCCCCCcccccccCHHHHHHHhC
Confidence            987 5556778899999999998874

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.05  E-value=2.2e-05  Score=59.23  Aligned_cols=99  Identities=24%  Similarity=0.284  Sum_probs=75.6

Q ss_pred             eEeeccccccccccCCccEEEE-EeeCCC-chHHHHHHHHHHHHhc--CCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWL-FAPAYG-SDKVILTFEEVAKALK--GKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~--~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      +..++..++......+.+.++. +.+|+. |......+.++++.+.  +.   +.|+.+|++... ...+++.+|+.  .
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~id~~~~~-~~~~~~~~~i~--~   75 (104)
T cd02997           2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGK---GVLAAVDCTKPE-HDALKEEYNVK--G   75 (104)
T ss_pred             eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCc---eEEEEEECCCCc-cHHHHHhCCCc--c
Confidence            4567777888777776665554 556666 8899999999999987  55   899999998743 45778899994  3


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHH
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFG  372 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi  372 (408)
                      .|.++++..+.....+.|..+.+.+.+|+
T Consensus        76 ~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l  104 (104)
T cd02997          76 FPTFKYFENGKFVEKYEGERTAEDIIEFM  104 (104)
T ss_pred             ccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence            67888887644466788988999998885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.05  E-value=2.8e-05  Score=58.54  Aligned_cols=94  Identities=16%  Similarity=0.146  Sum_probs=74.7

Q ss_pred             eEeeccccccccccCCccEEEEEeeC---CC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWLFAPA---YG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~f~~~---~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      +++++..|+.+....+.+.+++|...   +. |......+.++|+++.++   +.|+.+|++++   +.++..|++..  
T Consensus        12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~---~~la~~f~V~s--   83 (111)
T cd02965          12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADE---QALAARFGVLR--   83 (111)
T ss_pred             CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCC---HHHHHHcCCCc--
Confidence            56788899998887767777777654   43 899999999999999999   99999998874   48899999954  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHH
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIK  369 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~  369 (408)
                      .|.++++..+.....+.|..+.+++.
T Consensus        84 IPTli~fkdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          84 TPALLFFRDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             CCEEEEEECCEEEEEEeCccCHHHHh
Confidence            78888887644444577877777654

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.04  E-value=7.8e-05  Score=57.15  Aligned_cols=95  Identities=15%  Similarity=0.157  Sum_probs=70.2

Q ss_pred             CcccccChhHHHHHhccCCeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEE
Q 015368          163 GTYSITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIF  236 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~  236 (408)
                      .+..|++.+++.+.+.....+++.|+.+||.++.   +.+..+++....+.|+.+   ....+++++++.   +.|++++
T Consensus         5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~---~vPt~l~   81 (113)
T cd02989           5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIK---VLPTVIL   81 (113)
T ss_pred             CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCc---cCCEEEE
Confidence            4667888899999998888999999999999854   456666644456788765   556789999999   5999999


Q ss_pred             eecCCCc-------ccccCCcCCHHHHHHHH
Q 015368          237 LHLEAGK-------ATPFRHQFTRLAIANFV  260 (408)
Q Consensus       237 ~~~~~~~-------~~~y~g~~~~~~i~~fi  260 (408)
                      |+.+...       .....++++.+++..|+
T Consensus        82 fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          82 FKNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             EECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            9976411       11112457778888876

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR01068 thioredoxin thioredoxin

Probab=98.02  E-value=2.8e-05  Score=58.21  Aligned_cols=83  Identities=18%  Similarity=0.285  Sum_probs=64.4

Q ss_pred             cEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCCC
Q 015368          285 KQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGE  362 (408)
Q Consensus       285 ~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~  362 (408)
                      ++++ ++.+++. |......++++++++.++   +.|+.+|++..   ..+++.||+.  ..|.++++..+.....+.|.
T Consensus        16 ~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~---~~~~~~~~v~--~~P~~~~~~~g~~~~~~~g~   87 (101)
T TIGR01068        16 PVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDEN---PDIAAKYGIR--SIPTLLLFKNGKEVDRSVGA   87 (101)
T ss_pred             cEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCC---HHHHHHcCCC--cCCEEEEEeCCcEeeeecCC
Confidence            4444 4555665 888889999999999988   99999998864   4778999995  36888888654444556777


Q ss_pred             CChHHHHHHHHHH
Q 015368          363 LTLSSIKSFGEEF  375 (408)
Q Consensus       363 ~~~~~i~~Fi~~~  375 (408)
                      .+.+.+.+|+++.
T Consensus        88 ~~~~~l~~~l~~~  100 (101)
T TIGR01068        88 LPKAALKQLINKN  100 (101)
T ss_pred             CCHHHHHHHHHhh
Confidence            8889999999865

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=98.00  E-value=0.00013  Score=53.88  Aligned_cols=91  Identities=14%  Similarity=0.217  Sum_probs=65.4

Q ss_pred             ChhhHHHHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCc-CcEEEEE
Q 015368           62 NGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILA-YPTLYLF  134 (408)
Q Consensus        62 ~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~-~Pt~~~~  134 (408)
                      +.+++++++.+  .++++|.=.++.|+-.......|++..+...+++.++.+|+-++++    ++.+|||.. -|.++++
T Consensus         6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili   85 (105)
T PF11009_consen    6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI   85 (105)
T ss_dssp             SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred             CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence            45778887755  7889998899999999999999999999887679999999988765    578899974 7999999


Q ss_pred             eCCeEeEEee-CCCCHHHH
Q 015368          135 VAGVRQFQFF-GERTRDVI  152 (408)
Q Consensus       135 ~~g~~~~~~~-g~~~~~~l  152 (408)
                      ++|+.+..-. +..+.+.|
T Consensus        86 ~~g~~v~~aSH~~It~~~l  104 (105)
T PF11009_consen   86 KNGKVVWHASHWDITAEAL  104 (105)
T ss_dssp             ETTEEEEEEEGGG-SHHHH
T ss_pred             ECCEEEEECccccCCHHhc
Confidence            9997765443 44666554

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.98  E-value=3.2e-05  Score=65.93  Aligned_cols=77  Identities=17%  Similarity=0.260  Sum_probs=56.1

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEE--EEEe-------------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADL--VMVD-------------------------------------  112 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~--~~v~-------------------------------------  112 (408)
                      +++..++.|..+.|++|+++.+.+.+    ..+++.+  ..+.                                     
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~  151 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPA  151 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCc
Confidence            35789999999999999999999876    1122222  2211                                     


Q ss_pred             ------CcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368          113 ------AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       113 ------~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i  156 (408)
                            ++++..+++++||+++|+++ +.+|+.   ..|..+.++|.+||
T Consensus       152 ~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L  197 (197)
T cd03020         152 ASCDNPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL  197 (197)
T ss_pred             cccCchHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence                  12234678899999999997 778854   57888888888764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=97.98  E-value=3.1e-05  Score=57.96  Aligned_cols=77  Identities=10%  Similarity=0.144  Sum_probs=60.2

Q ss_pred             cCCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe----cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcC
Q 015368          179 VESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT----TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF  251 (408)
Q Consensus       179 ~~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~----~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~  251 (408)
                      .++.++|.|+++||.++   .+.+.++++....+.++.+    ....+++++++.   ++|++++|+.+  ....|.|..
T Consensus        17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~---~~PT~~lf~~g--~~~~~~G~~   91 (100)
T cd02999          17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVV---GFPTILLFNST--PRVRYNGTR   91 (100)
T ss_pred             CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCe---ecCEEEEEcCC--ceeEecCCC
Confidence            46789999999999874   4566677643345656544    346789999998   59999999876  677899999


Q ss_pred             CHHHHHHHH
Q 015368          252 TRLAIANFV  260 (408)
Q Consensus       252 ~~~~i~~fi  260 (408)
                      +.++|.+||
T Consensus        92 ~~~~l~~f~  100 (100)
T cd02999          92 TLDSLAAFY  100 (100)
T ss_pred             CHHHHHhhC
Confidence            999999986

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX)

Probab=97.97  E-value=5.1e-05  Score=54.94  Aligned_cols=104  Identities=19%  Similarity=0.250  Sum_probs=68.9

Q ss_pred             eeccccccccccCCccEEEEEeeCCC---chHHHHHHHHHHHHhc----CCc-ceEEEEEEEcCCcccccchhhhccCCC
Q 015368          270 TLTIHNAQFVFQDPRKQLWLFAPAYG---SDKVILTFEEVAKALK----GKV-NMLLHVYVEMNSEGVGRRVSQEFGVSG  341 (408)
Q Consensus       270 ~lt~~~~~~~~~~~~~~~i~f~~~~~---~~~~~~~~~~vA~~~~----~~~-~~i~f~~vd~~~~~~~~~l~~~~~i~~  341 (408)
                      .||+.+...+...  |.+++|.+.++   .+...+.++.+|.+.-    .+. ..-....++.+++ ....+.+..+++.
T Consensus         3 ~Lse~~a~~Ln~~--p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede-~tdsLRDf~nL~d   79 (116)
T cd03071           3 ELSESNAVQLNEG--PCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDD-MTDSLRDYTNLPE   79 (116)
T ss_pred             cccHHHHHhhcCC--ceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccch-HHHHHHHhcCCCc
Confidence            3555554444333  78899997755   5677778888887652    110 0123333333333 2556667778854


Q ss_pred             CCCcEEEEEcc-CCccccCCC-CCChHHHHHHHHHHhc
Q 015368          342 NAPRVIAYSAR-DAKKYVLNG-ELTLSSIKSFGEEFLE  377 (408)
Q Consensus       342 ~~~p~i~i~~~-~~~~y~~~~-~~~~~~i~~Fi~~~~~  377 (408)
                       .-|.+++.+. ++++|.++. .+|++.+.+|+++++.
T Consensus        80 -~~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~ylA  116 (116)
T cd03071          80 -AAPLLTILDMSARAKYVMDVEEITPAIVEAFVSDFLA  116 (116)
T ss_pred             -cCceEEEEeccccceEeCchHhcCHHHHHHHHHHhhC
Confidence             4678888887 889999864 8999999999999863

NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.97  E-value=8.1e-05  Score=56.64  Aligned_cols=98  Identities=13%  Similarity=0.153  Sum_probs=71.8

Q ss_pred             EcChhhHHHHHcCCCcEEEEE---ecCCChhHHhhhHHHHHHHHHhc-CCcEEEEEeCcccHhHHHHcCCCc----CcEE
Q 015368           60 SLNGKNFSEFMGKNRNVMVMF---YANWCYWSKKLAPEFAAAAKMLK-GEADLVMVDAYLEKDLAKEYNILA----YPTL  131 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~v~f---~a~wC~~C~~~~p~~~~~~~~~~-~~v~~~~v~~~~~~~~~~~~~i~~----~Pt~  131 (408)
                      .+|.++..... ..+.+++++   |+..-..-....+.+.++|+.++ +++.|+.+|.++.....+.||+..    .|++
T Consensus         3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~   81 (111)
T cd03073           3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVV   81 (111)
T ss_pred             eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEE
Confidence            35566666554 233344432   22233445678889999999999 699999999999888999999984    9999


Q ss_pred             EEEe-CCeEeEEeeCCC-CHHHHHHHHHhH
Q 015368          132 YLFV-AGVRQFQFFGER-TRDVISAWVREK  159 (408)
Q Consensus       132 ~~~~-~g~~~~~~~g~~-~~~~l~~~i~~~  159 (408)
                      .+.+ ++ ......+.. +.+.|.+|+++.
T Consensus        82 ~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f  110 (111)
T cd03073          82 AIRTAKG-KKYVMEEEFSDVDALEEFLEDF  110 (111)
T ss_pred             EEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence            9998 44 333356778 999999999864

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=97.94  E-value=6.8e-05  Score=56.65  Aligned_cols=96  Identities=21%  Similarity=0.228  Sum_probs=69.6

Q ss_pred             ccccccccCCccEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc
Q 015368          274 HNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR  352 (408)
Q Consensus       274 ~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~  352 (408)
                      +++.++...+..++.++.+|+. |+...+.+.+++++++++...+.++.+|++..   ..+++.+++..  .|.+++++.
T Consensus         7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~---~~~~~~~~I~~--~Pt~~l~~~   81 (104)
T cd03000           7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY---SSIASEFGVRG--YPTIKLLKG   81 (104)
T ss_pred             hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC---HhHHhhcCCcc--ccEEEEEcC
Confidence            3444443333244556667777 88999999999999853212289999998764   47788999953  688888864


Q ss_pred             CCccccCCCCCChHHHHHHHHHH
Q 015368          353 DAKKYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       353 ~~~~y~~~~~~~~~~i~~Fi~~~  375 (408)
                       +..+.+.|..+.++|.+|++++
T Consensus        82 -~~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          82 -DLAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             -CCceeecCCCCHHHHHHHHHhh
Confidence             4566788989999999999876

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.93  E-value=0.00035  Score=54.85  Aligned_cols=108  Identities=19%  Similarity=0.244  Sum_probs=80.3

Q ss_pred             CcEEcChhhHH-HHHcCCCcEEEEEecC--CChh-H-HhhhHHHHHHHHHhcCC-cEEEEEeCcccHhHHHHcCCC--cC
Q 015368           57 DVVSLNGKNFS-EFMGKNRNVMVMFYAN--WCYW-S-KKLAPEFAAAAKMLKGE-ADLVMVDAYLEKDLAKEYNIL--AY  128 (408)
Q Consensus        57 ~~~~l~~~~~~-~~~~~~~~~~v~f~a~--wC~~-C-~~~~p~~~~~~~~~~~~-v~~~~v~~~~~~~~~~~~~i~--~~  128 (408)
                      .+++|+.++.- ..=.+++..+|-|.-.  .|.. + ......+.++|+.++++ +.|+.+|.++...+.+.||+.  ++
T Consensus         3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~   82 (130)
T cd02983           3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGY   82 (130)
T ss_pred             ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCC
Confidence            56777766553 3334456666666432  1322 3 35577899999999998 999999999999999999995  49


Q ss_pred             cEEEEEeCCeEeEE-eeCCCCHHHHHHHHHhHhCCCc
Q 015368          129 PTLYLFVAGVRQFQ-FFGERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       129 Pt~~~~~~g~~~~~-~~g~~~~~~l~~~i~~~~~~~~  164 (408)
                      |++++++..+.... +.|..+.+.+.+|+++.+...+
T Consensus        83 P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl  119 (130)
T cd02983          83 PAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG  119 (130)
T ss_pred             CEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence            99999983222333 7799999999999999986554

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=97.92  E-value=0.00012  Score=55.06  Aligned_cols=92  Identities=14%  Similarity=0.184  Sum_probs=67.7

Q ss_pred             cccChhHHHHHhccCCeEEEEEecCCCCcCH---HHHHHHh-ccCC-ceeEEEe--cCHhHHhhcCCCCCCCCCeEEEee
Q 015368          166 SITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAAS-KLHS-DVNFYQT--TSADVAEFFHIHPKSKRPALIFLH  238 (408)
Q Consensus       166 ~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~---~~~~~~a-~~~~-~~~f~~~--~~~~l~~~~~i~~~~~~p~l~~~~  238 (408)
                      .+.+.++++..++.+++++|.|+++||.++.   +.+..++ ++.+ .+.|..+  .+.+++++|+++   +.|++++|+
T Consensus         3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~---~~Pt~~~~~   79 (102)
T cd02948           3 EINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGK---CEPTFLFYK   79 (102)
T ss_pred             EccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCC---cCcEEEEEE
Confidence            4678899999998889999999999999854   4555555 4442 3566654  456889999999   589999998


Q ss_pred             cCCCcccccCCcCCHHHHHHHHhc
Q 015368          239 LEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       239 ~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      ++. ......| .+.+.+.+||.+
T Consensus        80 ~g~-~~~~~~G-~~~~~~~~~i~~  101 (102)
T cd02948          80 NGE-LVAVIRG-ANAPLLNKTITE  101 (102)
T ss_pred             CCE-EEEEEec-CChHHHHHHHhh
Confidence            653 3334455 377888888854

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.92  E-value=7.9e-05  Score=59.69  Aligned_cols=98  Identities=6%  Similarity=0.085  Sum_probs=74.4

Q ss_pred             ccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccC
Q 015368          276 AQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARD  353 (408)
Q Consensus       276 ~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~  353 (408)
                      +......+.++++ |+.+||. |......+.+++.++.++   +.|+.+|.+... ...+++.|++.  ..|.+++++.+
T Consensus        13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~-~~~~~~~~~V~--~iPt~v~~~~~   86 (142)
T cd02950          13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPK-WLPEIDRYRVD--GIPHFVFLDRE   86 (142)
T ss_pred             HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcc-cHHHHHHcCCC--CCCEEEEECCC
Confidence            3444455665555 5556776 999999999999999888   899999887643 23567899995  37899988764


Q ss_pred             C-ccccCCCCCChHHHHHHHHHHhcCc
Q 015368          354 A-KKYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       354 ~-~~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                      | ....+.|..+.+.+.++++.+++|.
T Consensus        87 G~~v~~~~G~~~~~~l~~~l~~l~~~~  113 (142)
T cd02950          87 GNEEGQSIGLQPKQVLAQNLDALVAGE  113 (142)
T ss_pred             CCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence            4 4445778888999999999999874

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=4.6e-05  Score=66.56  Aligned_cols=105  Identities=22%  Similarity=0.273  Sum_probs=82.9

Q ss_pred             CCceEeecccccccccc--CCc-cEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccC
Q 015368          265 HPLVVTLTIHNAQFVFQ--DPR-KQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV  339 (408)
Q Consensus       265 ~p~v~~lt~~~~~~~~~--~~~-~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i  339 (408)
                      .|.+.+.|..||+...-  +.. |+++ |..+|+. |.+..+.+.+++.+++|+   +.++.+||+..   +.+...||+
T Consensus        22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~---p~vAaqfgi   95 (304)
T COG3118          22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAE---PMVAAQFGV   95 (304)
T ss_pred             cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcc---hhHHHHhCc
Confidence            34588999999886442  222 6655 5567777 999999999999999999   99999999874   588999999


Q ss_pred             CCCCCcEEEEEccCCccc-cCCCCCChHHHHHHHHHHhcC
Q 015368          340 SGNAPRVIAYSARDAKKY-VLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~~~y-~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      .  ..|.++.+.. |+.- .+.|....+.|.+|++.+..-
T Consensus        96 q--sIPtV~af~d-GqpVdgF~G~qPesqlr~~ld~~~~~  132 (304)
T COG3118          96 Q--SIPTVYAFKD-GQPVDGFQGAQPESQLRQFLDKVLPA  132 (304)
T ss_pred             C--cCCeEEEeeC-CcCccccCCCCcHHHHHHHHHHhcCh
Confidence            4  4688877764 4443 477888889999999999876

>KOG3414 consensus Component of the U4/U6

Probab=97.89  E-value=0.0002  Score=53.56  Aligned_cols=78  Identities=21%  Similarity=0.284  Sum_probs=67.9

Q ss_pred             hhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368           63 GKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ  140 (408)
Q Consensus        63 ~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~  140 (408)
                      +...++++  ...+.++|-|-..|-+.|.++...+.++++...+-..++-||.++-+++.+-|++...|++++|-+++..
T Consensus        11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHm   90 (142)
T KOG3414|consen   11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHM   90 (142)
T ss_pred             HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCceE
Confidence            45666666  3567899999999999999999999999999988788889999999999999999999999999876543

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.84  E-value=0.00014  Score=64.11  Aligned_cols=82  Identities=15%  Similarity=0.200  Sum_probs=60.4

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC----------------c----------------------
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA----------------Y----------------------  114 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~----------------~----------------------  114 (408)
                      .+.+++.|.-+.|++|+++.+.+..+.+.  +++.+..+-.                .                      
T Consensus       117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~  194 (251)
T PRK11657        117 APRIVYVFADPNCPYCKQFWQQARPWVDS--GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPP  194 (251)
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHhhc--CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCcc
Confidence            35789999999999999999998776553  2233322211                0                      


Q ss_pred             ------------ccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHH
Q 015368          115 ------------LEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       115 ------------~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~  157 (408)
                                  ++..+++++|++|+|++++-+ +| .+....|..+.++|.+++.
T Consensus       195 ~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~  249 (251)
T PRK11657        195 ASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG  249 (251)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence                        122366789999999999887 67 6677889999999988764

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.82  E-value=0.00014  Score=54.09  Aligned_cols=94  Identities=18%  Similarity=0.218  Sum_probs=71.8

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhH---HHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAP---EFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p---~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      ....++..+++..+..+... |.|++..|..|.+...   .+-++.+.+.+.+..+.|.-..+..+..+||+..+|++++
T Consensus        10 g~~~vd~~~ld~~l~~~~~~-vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf   88 (107)
T PF07449_consen   10 GWPRVDADTLDAFLAAPGDA-VLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVF   88 (107)
T ss_dssp             TEEEE-CCCHHHHHHCCSCE-EEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEE
T ss_pred             CCeeechhhHHHHHhCCCcE-EEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEE
Confidence            56678889999999776554 4566666666655544   5667777777778888888778899999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHH
Q 015368          134 FVAGVRQFQFFGERTRDV  151 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~  151 (408)
                      +++|+......|.++.++
T Consensus        89 ~R~g~~lG~i~gi~dW~d  106 (107)
T PF07449_consen   89 FRDGRYLGAIEGIRDWAD  106 (107)
T ss_dssp             EETTEEEEEEESSSTHHH
T ss_pred             EECCEEEEEecCeecccc
Confidence            999988888888887654

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.82  E-value=0.00017  Score=48.26  Aligned_cols=54  Identities=15%  Similarity=0.234  Sum_probs=41.6

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEeCCe
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~  138 (408)
                      ++.|+.+||++|+.....+++    .  ++.+-.+|++++++.    .+..|..++|++++  +|+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~----~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~   58 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE----K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK   58 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH----T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred             cEEEEcCCCcCHHHHHHHHHH----c--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence            578999999999998887733    2  588888898887543    33349999999986  664

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.81  E-value=0.00017  Score=71.61  Aligned_cols=92  Identities=16%  Similarity=0.270  Sum_probs=73.1

Q ss_pred             EcChhhHHHHHcCCCcEEE-EEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368           60 SLNGKNFSEFMGKNRNVMV-MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~v-~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      .|+.+..+.+..=++++-| .|.+++|++|......+++++.+.. +|..-.||..+.++++++|+|.++|++++  ||+
T Consensus       462 ~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~  538 (555)
T TIGR03143       462 PLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ  538 (555)
T ss_pred             CCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcccHHHHHhCCceecCEEEE--CCE
Confidence            3444444444433456645 4689999999999999999998865 79999999999999999999999999976  664


Q ss_pred             EeEEeeCCCCHHHHHHHH
Q 015368          139 RQFQFFGERTRDVISAWV  156 (408)
Q Consensus       139 ~~~~~~g~~~~~~l~~~i  156 (408)
                      .  .+.|..+.+++.+||
T Consensus       539 ~--~~~G~~~~~~~~~~~  554 (555)
T TIGR03143       539 Q--VYFGKKTIEEMLELI  554 (555)
T ss_pred             E--EEeeCCCHHHHHHhh
Confidence            3  366988999998886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=97.79  E-value=0.00019  Score=68.29  Aligned_cols=96  Identities=10%  Similarity=0.170  Sum_probs=71.8

Q ss_pred             CcccccChhHHHHHhc---cCCeEEEEEecCCCCcC---HHHHHHHh-ccCCc-eeEEEe---cCH-hH-HhhcCCCCCC
Q 015368          163 GTYSITTTDEAERILT---VESKLVLGFLHDLEGME---SEELAAAS-KLHSD-VNFYQT---TSA-DV-AEFFHIHPKS  229 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~---~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~-~~f~~~---~~~-~l-~~~~~i~~~~  229 (408)
                      .+..+ +.++++..+.   .+++++|.|+.+||.++   .+.|.+++ ++.+. +.|+.+   .+. .+ .+.++|.   
T Consensus       352 ~Vv~L-~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~---  427 (463)
T TIGR00424       352 NVVSL-SRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG---  427 (463)
T ss_pred             CeEEC-CHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC---
Confidence            45555 4567888875   67789999999999884   45677777 45443 667655   222 34 4689998   


Q ss_pred             CCCeEEEeecCCCcccccC-CcCCHHHHHHHHhc
Q 015368          230 KRPALIFLHLEAGKATPFR-HQFTRLAIANFVTH  262 (408)
Q Consensus       230 ~~p~l~~~~~~~~~~~~y~-g~~~~~~i~~fi~~  262 (408)
                      ++|++++|+++...+..|. |..+.++|..||+.
T Consensus       428 ~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       428 SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL  461 (463)
T ss_pred             ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence            5999999998876788897 58999999999974

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=97.79  E-value=0.00023  Score=57.86  Aligned_cols=33  Identities=30%  Similarity=0.415  Sum_probs=28.8

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG  104 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~  104 (408)
                      +.+++++.|+.++|++|+.+.|.+.++...+++
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~   36 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD   36 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC
Confidence            357899999999999999999999998877653

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.00049  Score=55.09  Aligned_cols=98  Identities=13%  Similarity=0.208  Sum_probs=72.4

Q ss_pred             ChhhHHHHHcCCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc---------------------ccHh
Q 015368           62 NGKNFSEFMGKNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY---------------------LEKD  118 (408)
Q Consensus        62 ~~~~~~~~~~~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~---------------------~~~~  118 (408)
                      +++.+......+++|+++||- .|++-|-.++-.|.....+++. +..++.|..|                     .+..
T Consensus        19 ~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~   98 (157)
T COG1225          19 DGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGE   98 (157)
T ss_pred             CCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHH
Confidence            333333333467899999995 7899999999999999999987 8888888865                     3567


Q ss_pred             HHHHcCCCc------------CcEEEEEe-CCeEeEEeeC---CCCHHHHHHHHHhH
Q 015368          119 LAKEYNILA------------YPTLYLFV-AGVRQFQFFG---ERTRDVISAWVREK  159 (408)
Q Consensus       119 ~~~~~~i~~------------~Pt~~~~~-~g~~~~~~~g---~~~~~~l~~~i~~~  159 (408)
                      +++.||+.+            .+++++++ +|++...+..   .-.++.+.+.+.+.
T Consensus        99 v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l  155 (157)
T COG1225          99 VAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL  155 (157)
T ss_pred             HHHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence            888898743            47888888 7977766643   24566777776654

>PTZ00051 thioredoxin; Provisional

Probab=97.75  E-value=0.00019  Score=53.42  Aligned_cols=89  Identities=17%  Similarity=0.161  Sum_probs=65.2

Q ss_pred             cccccChhHHHHHhccCCeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEe
Q 015368          164 TYSITTTDEAERILTVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL  237 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~  237 (408)
                      +.++.+.+++...++.++.+++.|+.+||.++.   +.+..+++...++.|+.+   ....+++++++.   +.|++++|
T Consensus         2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~---~~Pt~~~~   78 (98)
T PTZ00051          2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENIT---SMPTFKVF   78 (98)
T ss_pred             eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCc---eeeEEEEE
Confidence            467888899999999999999999999999854   345555544445777655   446789999998   59999999


Q ss_pred             ecCCCcccccCCcCCHHHHH
Q 015368          238 HLEAGKATPFRHQFTRLAIA  257 (408)
Q Consensus       238 ~~~~~~~~~y~g~~~~~~i~  257 (408)
                      +.+. ....+.|. ..++|.
T Consensus        79 ~~g~-~~~~~~G~-~~~~~~   96 (98)
T PTZ00051         79 KNGS-VVDTLLGA-NDEALK   96 (98)
T ss_pred             eCCe-EEEEEeCC-CHHHhh
Confidence            7553 44566664 444443

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=97.73  E-value=0.00013  Score=55.71  Aligned_cols=84  Identities=14%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVL  359 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~  359 (408)
                      +.|+++ ++.+|+. |....+.+.++++++++ +   +.|+.+|++..   +.+++.+|+.  ..|.+++++.+.....+
T Consensus        24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~---v~~~~vd~d~~---~~l~~~~~V~--~~Pt~~i~~~g~~~~~~   95 (111)
T cd02963          24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG---VGIATVNAGHE---RRLARKLGAH--SVPAIVGIINGQVTFYH   95 (111)
T ss_pred             CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC---ceEEEEecccc---HHHHHHcCCc--cCCEEEEEECCEEEEEe
Confidence            345555 5556776 89999999999999975 5   89999998764   4778999994  36788888644333346


Q ss_pred             CCCCChHHHHHHHHH
Q 015368          360 NGELTLSSIKSFGEE  374 (408)
Q Consensus       360 ~~~~~~~~i~~Fi~~  374 (408)
                      .|..+.+.|.+||++
T Consensus        96 ~G~~~~~~l~~~i~~  110 (111)
T cd02963          96 DSSFTKQHVVDFVRK  110 (111)
T ss_pred             cCCCCHHHHHHHHhc
Confidence            788899999999986

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PLN02309 5'-adenylylsulfate reductase

Probab=97.72  E-value=0.00025  Score=67.53  Aligned_cols=96  Identities=9%  Similarity=0.167  Sum_probs=72.6

Q ss_pred             CcccccChhHHHHHh---ccCCeEEEEEecCCCCcC---HHHHHHHh-ccCC-ceeEEEec----CHhHHh-hcCCCCCC
Q 015368          163 GTYSITTTDEAERIL---TVESKLVLGFLHDLEGME---SEELAAAS-KLHS-DVNFYQTT----SADVAE-FFHIHPKS  229 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~---~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~-~~~f~~~~----~~~l~~-~~~i~~~~  229 (408)
                      .+..+ +.++++..+   +.+..++|.|+.+||.++   .+.|..++ ++.+ .+.|+.+.    ...++. .++|.   
T Consensus       346 ~Vv~L-t~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~---  421 (457)
T PLN02309        346 NVVAL-SRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG---  421 (457)
T ss_pred             CcEEC-CHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCc---
Confidence            34445 557777776   367789999999999885   45677777 4433 47777653    346675 69998   


Q ss_pred             CCCeEEEeecCCCcccccCC-cCCHHHHHHHHhc
Q 015368          230 KRPALIFLHLEAGKATPFRH-QFTRLAIANFVTH  262 (408)
Q Consensus       230 ~~p~l~~~~~~~~~~~~y~g-~~~~~~i~~fi~~  262 (408)
                      ++|++++|+++...+..|.| ..+.++|..||+.
T Consensus       422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~  455 (457)
T PLN02309        422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS  455 (457)
T ss_pred             eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence            69999999988777889985 6999999999975

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=97.72  E-value=0.00033  Score=52.76  Aligned_cols=88  Identities=17%  Similarity=0.158  Sum_probs=63.1

Q ss_pred             ChhHHHHHhcc--CCeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEe---cC---HhHHhhcCCCCCCCCCeEEEe
Q 015368          169 TTDEAERILTV--ESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TS---ADVAEFFHIHPKSKRPALIFL  237 (408)
Q Consensus       169 ~~~~~~~~~~~--~~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~---~~l~~~~~i~~~~~~p~l~~~  237 (408)
                      |.++++..+..  ++.++|.|+++||.++.   +.+..+++....+.|+.+   .+   ..+++++++.   +.|++++|
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~---~~Pt~~~~   78 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKII---EVPHFLFY   78 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCC---cCCEEEEE
Confidence            56788888854  67899999999999854   556666633367777765   22   2688999999   59999999


Q ss_pred             ecCCCcccccCCcCCHHHHHHHHh
Q 015368          238 HLEAGKATPFRHQFTRLAIANFVT  261 (408)
Q Consensus       238 ~~~~~~~~~y~g~~~~~~i~~fi~  261 (408)
                      +++. ....+.|. ...++.+-+.
T Consensus        79 ~~G~-~v~~~~G~-~~~~l~~~~~  100 (103)
T cd02985          79 KDGE-KIHEEEGI-GPDELIGDVL  100 (103)
T ss_pred             eCCe-EEEEEeCC-CHHHHHHHHH
Confidence            7653 45677774 5566666554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=97.70  E-value=0.00046  Score=56.71  Aligned_cols=82  Identities=20%  Similarity=0.333  Sum_probs=64.0

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHh--cCCcEEEEEeCccc---------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLE---------------------------------  116 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~--~~~v~~~~v~~~~~---------------------------------  116 (408)
                      ..+++++.|+...|++|..+.+.+.++.+.+  .+++.+..++.-..                                 
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE   90 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            4578999999999999999999999999998  66788887765100                                 


Q ss_pred             -----------------------------------HhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHh
Q 015368          117 -----------------------------------KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       117 -----------------------------------~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                                                         ...+++.||.++||+++  ||+.   +.|..+.+++.+.|++
T Consensus        91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~---~~~~~~~~~l~~~Id~  162 (162)
T PF13462_consen   91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY---VVGPYTIEELKELIDK  162 (162)
T ss_dssp             STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE---EETTTSHHHHHHHHHH
T ss_pred             ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE---eCCCCCHHHHHHHHcC
Confidence                                               01346679999999988  8854   5889999999999874

...

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.68  E-value=0.00037  Score=68.81  Aligned_cols=97  Identities=19%  Similarity=0.186  Sum_probs=76.9

Q ss_pred             EcChhhHHHHHcCCCc-EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368           60 SLNGKNFSEFMGKNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      .|+++..+.+..=+++ -+-.|.+++|++|......+++++.... +|..-.||..+.++++.+|++.++|++++  +|+
T Consensus       102 ~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~  178 (517)
T PRK15317        102 KLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTMIDGALFQDEVEARNIMAVPTVFL--NGE  178 (517)
T ss_pred             CCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEEEEchhCHhHHHhcCCcccCEEEE--CCc
Confidence            3455544444332344 5788999999999999999999998655 89999999999999999999999999965  563


Q ss_pred             EeEEeeCCCCHHHHHHHHHhHhC
Q 015368          139 RQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       139 ~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                        ..+.|..+.+++.+.+.+..+
T Consensus       179 --~~~~g~~~~~~~~~~~~~~~~  199 (517)
T PRK15317        179 --EFGQGRMTLEEILAKLDTGAA  199 (517)
T ss_pred             --EEEecCCCHHHHHHHHhcccc
Confidence              347799999998888876543

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.67  E-value=0.0004  Score=50.30  Aligned_cols=75  Identities=17%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH----hHHHHcCC--CcCcEEEEEeCCeEeEEeeCCCCHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNI--LAYPTLYLFVAGVRQFQFFGERTRD  150 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~i--~~~Pt~~~~~~g~~~~~~~g~~~~~  150 (408)
                      ++.|..+||++|.+....++++..+.. ++.+..+|.+.+.    ++.+..+-  .++|++++  +|+.    .|  ..+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~----ig--G~~   72 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKH----VG--GCT   72 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEE----ec--CHH
Confidence            677899999999999999988765543 4777788877533    46666664  78999943  6633    33  347


Q ss_pred             HHHHHHHhHh
Q 015368          151 VISAWVREKM  160 (408)
Q Consensus       151 ~l~~~i~~~~  160 (408)
                      +|.+++.+..
T Consensus        73 dl~~~~~~~~   82 (86)
T TIGR02183        73 DFEQLVKENF   82 (86)
T ss_pred             HHHHHHHhcc
Confidence            7888887754

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=97.66  E-value=0.00026  Score=51.05  Aligned_cols=83  Identities=11%  Similarity=0.159  Sum_probs=61.6

Q ss_pred             cccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecC-C
Q 015368          164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLE-A  241 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~-~  241 (408)
                      ++++.+.+++.. ++.++..+|+||.+..++.+..|..+| .++.++.|+........ .....   + +.+++|++. .
T Consensus         1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~~-~~~~~---~-~~~i~frp~~~   74 (91)
T cd03070           1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVTK-PERPP---G-DNIIYFPPGHN   74 (91)
T ss_pred             CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEeccccc-cccCC---C-CCeEEECCCCC
Confidence            356777788887 777888999999999999999999988 78999999887655442 22222   2 445667765 4


Q ss_pred             CcccccCCcCC
Q 015368          242 GKATPFRHQFT  252 (408)
Q Consensus       242 ~~~~~y~g~~~  252 (408)
                      .....|.|+++
T Consensus        75 ~~~~~y~G~~t   85 (91)
T cd03070          75 APDMVYLGSLT   85 (91)
T ss_pred             CCceEEccCCC
Confidence            45588999974

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.64  E-value=0.00059  Score=49.12  Aligned_cols=95  Identities=19%  Similarity=0.313  Sum_probs=78.1

Q ss_pred             ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc--cHhHHHHcCCC----cCc-EEEEE
Q 015368           62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNIL----AYP-TLYLF  134 (408)
Q Consensus        62 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~----~~P-t~~~~  134 (408)
                      +.++|..++...+.|+|+|..+- ..-...+..+.++|+..++.-+++-|||.+  ...+|+++.+.    .-| ++..|
T Consensus         8 d~KdfKKLLRTr~NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHY   86 (112)
T cd03067           8 DHKDFKKLLRTRNNVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHY   86 (112)
T ss_pred             chHHHHHHHhhcCcEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcc
Confidence            35788999988889999987765 334455668899999999999999999987  68899999998    445 35566


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHH
Q 015368          135 VAGVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~  157 (408)
                      ++|.--..|+...+...|.+|++
T Consensus        87 KdG~fHkdYdR~~t~kSmv~Flr  109 (112)
T cd03067          87 KDGDFHTEYNRQLTFKSMVAFLR  109 (112)
T ss_pred             cCCCccccccchhhHHHHHHHhh
Confidence            79988888999999999999986

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.64  E-value=0.00038  Score=49.48  Aligned_cols=57  Identities=14%  Similarity=0.224  Sum_probs=42.8

Q ss_pred             CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc---HhHHHHcCCCcCcEEEEEeCCe
Q 015368           74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE---KDLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~---~~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      +.-++.|..+||++|++....+++    .  ++.+-.+|++++   ..+.+..|...+|++++  +|+
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~----~--gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~   66 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKE----K--GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK   66 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHH----c--CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE
Confidence            445778999999999999888863    2  577777888766   34555678899999953  674

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=97.62  E-value=0.0005  Score=52.15  Aligned_cols=69  Identities=16%  Similarity=0.266  Sum_probs=53.7

Q ss_pred             hhHHHHHhc--cCCeEEEEEecCCCCcCH---HHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecC
Q 015368          170 TDEAERILT--VESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLE  240 (408)
Q Consensus       170 ~~~~~~~~~--~~~~~vi~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~  240 (408)
                      .++++..+.  .+.+++|.|+++||+++.   +.+.+++ ++.+.+.|+.+   .++++++++++.   +.|++++|+++
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~---~iPTf~~fk~G   78 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELY---DPPTVMFFFRN   78 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCC---CCCEEEEEECC
Confidence            456666675  466789999999999854   5677777 56666777765   677899999999   59999999976


Q ss_pred             C
Q 015368          241 A  241 (408)
Q Consensus       241 ~  241 (408)
                      .
T Consensus        79 ~   79 (114)
T cd02954          79 K   79 (114)
T ss_pred             E
Confidence            4

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.61  E-value=0.00051  Score=53.40  Aligned_cols=105  Identities=10%  Similarity=0.072  Sum_probs=77.2

Q ss_pred             CCCCceEeeccccccccccCCccEEEEEeeCC----CchHHHHHHHHHHHHhc-CCcceEEEEEEEcCCcccccchhhhc
Q 015368          263 TKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAY----GSDKVILTFEEVAKALK-GKVNMLLHVYVEMNSEGVGRRVSQEF  337 (408)
Q Consensus       263 ~~~p~v~~lt~~~~~~~~~~~~~~~i~f~~~~----~~~~~~~~~~~vA~~~~-~~~~~i~f~~vd~~~~~~~~~l~~~~  337 (408)
                      +-.|.+..   .++......+...++|+..+.    +..+..-++.++|++|. ++   +.|+.+|.+.+   +.+...|
T Consensus        17 ~g~~~~~~---~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~---v~~akVDiD~~---~~LA~~f   87 (132)
T PRK11509         17 RGWTPVSE---SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT---WQVAIADLEQS---EAIGDRF   87 (132)
T ss_pred             cCCCcccc---ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc---eEEEEEECCCC---HHHHHHc
Confidence            45555444   555555555545555555442    25566778999999998 57   99999999874   5899999


Q ss_pred             cCCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhcC
Q 015368          338 GVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       338 ~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      |+..  .|.++++..+...-.+.|..+.+.+.+||+.+++-
T Consensus        88 gV~s--iPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~  126 (132)
T PRK11509         88 GVFR--FPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_pred             CCcc--CCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence            9954  78999988644444678888999999999998865

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=97.60  E-value=0.00049  Score=52.78  Aligned_cols=93  Identities=14%  Similarity=0.181  Sum_probs=62.9

Q ss_pred             CcccccChhHHHHHhccC---CeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEecCH--hHHhhcCCCCCCCCCeE
Q 015368          163 GTYSITTTDEAERILTVE---SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~---~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~--~l~~~~~i~~~~~~p~l  234 (408)
                      .+.++++ +++...+...   ..+++.|+++||.++   .+.+..++....++.|+.+...  .+++++++.   +.|++
T Consensus         5 ~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~---~~Pt~   80 (113)
T cd02957           5 EVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIK---VLPTL   80 (113)
T ss_pred             eEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCC---cCCEE
Confidence            3456666 7777777544   788889999999874   4556666744456777765322  789999998   59999


Q ss_pred             EEeecCCCcccccCC-------cCCHHHHHHHH
Q 015368          235 IFLHLEAGKATPFRH-------QFTRLAIANFV  260 (408)
Q Consensus       235 ~~~~~~~~~~~~y~g-------~~~~~~i~~fi  260 (408)
                      ++|+.+. ....+.|       +++.+.|.+|+
T Consensus        81 ~~f~~G~-~v~~~~G~~~~~~~~~~~~~l~~~l  112 (113)
T cd02957          81 LVYKNGE-LIDNIVGFEELGGDDFTTEDLEKFL  112 (113)
T ss_pred             EEEECCE-EEEEEecHHHhCCCCCCHHHHHHHh
Confidence            9999764 2223322       24556666664

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.57  E-value=0.00022  Score=51.12  Aligned_cols=57  Identities=18%  Similarity=0.310  Sum_probs=42.3

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-----hHHHHcCCCcCcEEEEEeCCeE
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      ++.|+++||++|+...+.++++..    .+.+..++.+.+.     .+.+..|..++|++  |.+|+.
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~   63 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF   63 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence            477999999999999999888655    4567777766542     34566788999997  456743

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.55  E-value=0.0017  Score=49.01  Aligned_cols=108  Identities=19%  Similarity=0.214  Sum_probs=74.2

Q ss_pred             eEeeccccccccccCCccEEEEEeeCCCchHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--ccccchhhhccCCCCCCc
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--GVGRRVSQEFGVSGNAPR  345 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--~~~~~l~~~~~i~~~~~p  345 (408)
                      ...|+.-+|..+...-.-.++=|.---.+-+-.+.|.++|++....+.++.++.|...++  .-+.+|.+.|+++.+..|
T Consensus         6 ~v~LD~~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP   85 (126)
T PF07912_consen    6 CVPLDELTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP   85 (126)
T ss_dssp             SEEESTTHHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred             eeeccceehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence            356788888888877765556676655555667889999955443334599999988766  237789999999988889


Q ss_pred             EEEEEccC-Cc--cccCCCCCChHHHHHHHHHH
Q 015368          346 VIAYSARD-AK--KYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       346 ~i~i~~~~-~~--~y~~~~~~~~~~i~~Fi~~~  375 (408)
                      ++.++..+ ..  .|+..++++.++|.+|+.+-
T Consensus        86 v~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~  118 (126)
T PF07912_consen   86 VIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN  118 (126)
T ss_dssp             EEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred             EEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence            99988852 22  33448899999999999863

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=97.52  E-value=0.0012  Score=52.18  Aligned_cols=83  Identities=13%  Similarity=0.139  Sum_probs=59.0

Q ss_pred             cccccChhHHHHHhc--cCCeEEEEEecCCCCcC---HHHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368          164 TYSITTTDEAERILT--VESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~--~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l  234 (408)
                      +..+.|.+++++.+.  .+..+++-|+++||+++   .+.+.+++ ++.+.+.|+.+   ..+++++.|++..   .|++
T Consensus         5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~---~~t~   81 (142)
T PLN00410          5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYD---PCTV   81 (142)
T ss_pred             HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccC---CCcE
Confidence            456788999998885  56788999999999984   45677777 45555666655   6678999999983   5666


Q ss_pred             E-EeecCCCcccccCC
Q 015368          235 I-FLHLEAGKATPFRH  249 (408)
Q Consensus       235 ~-~~~~~~~~~~~y~g  249 (408)
                      + +|+++....-..+|
T Consensus        82 ~~ffk~g~~~vd~~tG   97 (142)
T PLN00410         82 MFFFRNKHIMIDLGTG   97 (142)
T ss_pred             EEEEECCeEEEEEecc
Confidence            6 77765323333345

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.51  E-value=0.0031  Score=48.24  Aligned_cols=78  Identities=18%  Similarity=0.276  Sum_probs=63.2

Q ss_pred             ChhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE-EEEEeCCe
Q 015368           62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT-LYLFVAGV  138 (408)
Q Consensus        62 ~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt-~~~~~~g~  138 (408)
                      ++...++++  .+.+.+++-|-.+|-+.|.++...+.++++..+.-..++.||.++-+++.+.|.+. -|. +++|-+++
T Consensus         7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rnk   85 (133)
T PF02966_consen    7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRNK   85 (133)
T ss_dssp             SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETTE
T ss_pred             ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecCe
Confidence            355677666  56789999999999999999999999999999988899999999999999999999 665 44444775


Q ss_pred             Ee
Q 015368          139 RQ  140 (408)
Q Consensus       139 ~~  140 (408)
                      .+
T Consensus        86 hm   87 (133)
T PF02966_consen   86 HM   87 (133)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=97.51  E-value=0.0009  Score=49.63  Aligned_cols=87  Identities=18%  Similarity=0.247  Sum_probs=61.7

Q ss_pred             ChhHHHHHhccC--CeEEEEEecCCCCcCH---HHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeec
Q 015368          169 TTDEAERILTVE--SKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHL  239 (408)
Q Consensus       169 ~~~~~~~~~~~~--~~~vi~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~  239 (408)
                      |.++++..+...  ..+++.|+.+||.++.   +.+..++ ++...+.++.+   ...++++++++.   +.|++++|+.
T Consensus         1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~---~~Pt~~~~~~   77 (97)
T cd02984           1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEIT---AVPTFVFFRN   77 (97)
T ss_pred             CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCc---cccEEEEEEC
Confidence            356777777665  8899999999998744   4455555 44667777765   455789999998   5999999975


Q ss_pred             CCCcccccCCcCCHHHHHHHH
Q 015368          240 EAGKATPFRHQFTRLAIANFV  260 (408)
Q Consensus       240 ~~~~~~~y~g~~~~~~i~~fi  260 (408)
                      + .....+.|. +.++|.++|
T Consensus        78 g-~~~~~~~g~-~~~~l~~~~   96 (97)
T cd02984          78 G-TIVDRVSGA-DPKELAKKV   96 (97)
T ss_pred             C-EEEEEEeCC-CHHHHHHhh
Confidence            4 234455564 567777665

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=97.49  E-value=0.00093  Score=55.48  Aligned_cols=99  Identities=13%  Similarity=0.140  Sum_probs=69.9

Q ss_pred             CCcccccChhHHHHHhccC---CeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEecCH--hHHhhcCCCCCCCCCe
Q 015368          162 LGTYSITTTDEAERILTVE---SKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPA  233 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~---~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~~~~--~l~~~~~i~~~~~~p~  233 (408)
                      ..+..|++.+++...+...   ..++|.|+.+||.++.   +.+..+|.....+.|+.+...  .++..|++.   +.|+
T Consensus        62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~---~vPT  138 (175)
T cd02987          62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFDTD---ALPA  138 (175)
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccchhhHHhCCCC---CCCE
Confidence            4466777767777776543   3788889999999854   567777755567899887444  588999998   5999


Q ss_pred             EEEeecCCCc--c---cc-cCCcCCHHHHHHHHhcC
Q 015368          234 LIFLHLEAGK--A---TP-FRHQFTRLAIANFVTHT  263 (408)
Q Consensus       234 l~~~~~~~~~--~---~~-y~g~~~~~~i~~fi~~~  263 (408)
                      +++|+.+...  .   .. ...+++.++|..|+..+
T Consensus       139 lllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         139 LLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             EEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence            9999976411  1   11 12357788888888653

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.47  E-value=0.00085  Score=48.84  Aligned_cols=86  Identities=15%  Similarity=0.256  Sum_probs=63.1

Q ss_pred             HHHHHhccCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCCCccc
Q 015368          172 EAERILTVESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKAT  245 (408)
Q Consensus       172 ~~~~~~~~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~  245 (408)
                      +++..+....++++.|+.++|..+..   .+..+++..+++.|+.+   .+..+++.+++.   +.|++++++.+. ...
T Consensus         2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~---~~P~~~~~~~g~-~~~   77 (93)
T cd02947           2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVR---SIPTFLFFKNGK-EVD   77 (93)
T ss_pred             chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcc---cccEEEEEECCE-EEE
Confidence            35556666688899999999987544   34444434667777765   456799999998   599999998653 456


Q ss_pred             ccCCcCCHHHHHHHHh
Q 015368          246 PFRHQFTRLAIANFVT  261 (408)
Q Consensus       246 ~y~g~~~~~~i~~fi~  261 (408)
                      .+.|..+.+.|.+||.
T Consensus        78 ~~~g~~~~~~l~~~i~   93 (93)
T cd02947          78 RVVGADPKEELEEFLE   93 (93)
T ss_pred             EEecCCCHHHHHHHhC
Confidence            7778777799998873

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.45  E-value=0.00086  Score=46.68  Aligned_cols=66  Identities=11%  Similarity=0.095  Sum_probs=47.3

Q ss_pred             EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHc---CCCcCcEEEEEeCCeEeEEeeCCCCHHHHHH
Q 015368           78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFVAGVRQFQFFGERTRDVISA  154 (408)
Q Consensus        78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~---~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~  154 (408)
                      ..|..++|++|++....+++      .++.+-.+|++++++....+   |..++|++++  +|.   .+.|..+.+.|.+
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~---~~~~G~~~~~~~~   70 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD---LSWSGFRPDKLKA   70 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC---cEEeccCHHHHHh
Confidence            56888999999999888864      26888889998877655544   8888999744  442   2345566666654

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PTZ00062 glutaredoxin; Provisional

Probab=97.43  E-value=0.0023  Score=54.19  Aligned_cols=162  Identities=11%  Similarity=0.069  Sum_probs=95.7

Q ss_pred             ccChhHHHHHhccC-CeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCC
Q 015368          167 ITTTDEAERILTVE-SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAG  242 (408)
Q Consensus       167 i~~~~~~~~~~~~~-~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~  242 (408)
                      ..+.+++.+.++++ ...++.|.++||.++   .+.+..+++....+.|+.+.-.     ++|.   +.|++++|+.+. 
T Consensus         3 ~~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----~~V~---~vPtfv~~~~g~-   73 (204)
T PTZ00062          3 FIKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----DANN---EYGVFEFYQNSQ-   73 (204)
T ss_pred             CCCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----cCcc---cceEEEEEECCE-
Confidence            45778888888765 667777779999884   4456677765678999988644     8998   599999999764 


Q ss_pred             cccccCCcCCHHHHHHHHhcCCCCceEeeccccccccccCCccEEEEEee------CCC-chHHHHHHHHHHHHhcCCcc
Q 015368          243 KATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAP------AYG-SDKVILTFEEVAKALKGKVN  315 (408)
Q Consensus       243 ~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i~f~~------~~~-~~~~~~~~~~vA~~~~~~~~  315 (408)
                      ....+.|- +...+..++..+.-+.-..-..+....+.++. |+ ++|..      .+. +......|++    .  .  
T Consensus        74 ~i~r~~G~-~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~~-~V-vvf~Kg~~~~p~C~~C~~~k~~L~~----~--~--  142 (204)
T PTZ00062         74 LINSLEGC-NTSTLVSFIRGWAQKGSSEDTVEKIERLIRNH-KI-LLFMKGSKTFPFCRFSNAVVNMLNS----S--G--  142 (204)
T ss_pred             EEeeeeCC-CHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CE-EEEEccCCCCCCChhHHHHHHHHHH----c--C--
Confidence            44566664 56777777776544321111112233343333 44 44544      233 4455444442    2  2  


Q ss_pred             eEEEEEEEcCCc-ccccchhhhccCCCCCCcEEEEEc
Q 015368          316 MLLHVYVEMNSE-GVGRRVSQEFGVSGNAPRVIAYSA  351 (408)
Q Consensus       316 ~i~f~~vd~~~~-~~~~~l~~~~~i~~~~~p~i~i~~  351 (408)
                       +.|...|.... +....+.+.-|-  ...|.+.|-.
T Consensus       143 -i~y~~~DI~~d~~~~~~l~~~sg~--~TvPqVfI~G  176 (204)
T PTZ00062        143 -VKYETYNIFEDPDLREELKVYSNW--PTYPQLYVNG  176 (204)
T ss_pred             -CCEEEEEcCCCHHHHHHHHHHhCC--CCCCeEEECC
Confidence             66677777644 212233222222  2367888743

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.42  E-value=0.0011  Score=55.46  Aligned_cols=38  Identities=16%  Similarity=0.287  Sum_probs=33.1

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEE
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLV  109 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~  109 (408)
                      .+++.++.|+...||+|+.+.+.+.++.+++.+++.+.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~   51 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFE   51 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEE
Confidence            56899999999999999999999999999886655554

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=97.41  E-value=0.00094  Score=49.62  Aligned_cols=85  Identities=15%  Similarity=0.312  Sum_probs=64.5

Q ss_pred             cCCccEEEEEe-eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCcccc
Q 015368          281 QDPRKQLWLFA-PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYV  358 (408)
Q Consensus       281 ~~~~~~~i~f~-~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~  358 (408)
                      ..+.+++++|. +++. |....+.++++++++.++   +.|..+|.+..   +.+.+.+++.  ..|.+++++.+.....
T Consensus        11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~---~~l~~~~~v~--~vPt~~i~~~g~~v~~   82 (97)
T cd02949          11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDED---QEIAEAAGIM--GTPTVQFFKDKELVKE   82 (97)
T ss_pred             hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC---HHHHHHCCCe--eccEEEEEECCeEEEE
Confidence            34445555544 6666 889999999999999888   99999998763   4778899994  4688888875444555


Q ss_pred             CCCCCChHHHHHHHH
Q 015368          359 LNGELTLSSIKSFGE  373 (408)
Q Consensus       359 ~~~~~~~~~i~~Fi~  373 (408)
                      +.|..+.+++.+|++
T Consensus        83 ~~g~~~~~~~~~~l~   97 (97)
T cd02949          83 ISGVKMKSEYREFIE   97 (97)
T ss_pred             EeCCccHHHHHHhhC
Confidence            788888888888863

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=97.36  E-value=0.0019  Score=54.41  Aligned_cols=98  Identities=12%  Similarity=0.141  Sum_probs=66.3

Q ss_pred             CCcccccChhHHHHHhccC--CeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEE
Q 015368          162 LGTYSITTTDEAERILTVE--SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF  236 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~--~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~  236 (408)
                      ..+..++..+........+  ..++|-|+.+||.++   .+.+..+|.....+.|..+........|++.   +.|++++
T Consensus        82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~---~lPTlli  158 (192)
T cd02988          82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCIPNYPDK---NLPTILV  158 (192)
T ss_pred             CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhHhhCCCC---CCCEEEE
Confidence            4556664433333444443  468888999999884   4567778854567899988766777899998   5999999


Q ss_pred             eecCCCc-----ccccCC-cCCHHHHHHHHhc
Q 015368          237 LHLEAGK-----ATPFRH-QFTRLAIANFVTH  262 (408)
Q Consensus       237 ~~~~~~~-----~~~y~g-~~~~~~i~~fi~~  262 (408)
                      |+.+...     ...+.| +++.++|..++..
T Consensus       159 yk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         159 YRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             EECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            9976411     112223 4777888877754

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.34  E-value=0.0014  Score=50.13  Aligned_cols=87  Identities=11%  Similarity=0.132  Sum_probs=66.2

Q ss_pred             CCccEEEEE-eeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCC--ccc
Q 015368          282 DPRKQLWLF-APAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA--KKY  357 (408)
Q Consensus       282 ~~~~~~i~f-~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~--~~y  357 (408)
                      ++.+++++| .+||. |+...+.+.+++.++ ++   +.|..+|.+.   .+.+...|++..  .|.+++++.++  ...
T Consensus        21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~---~~~l~~~~~v~~--vPt~~i~~~g~~~~~~   91 (113)
T cd02975          21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDE---DKEKAEKYGVER--VPTTIFLQDGGKDGGI   91 (113)
T ss_pred             CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCc---CHHHHHHcCCCc--CCEEEEEeCCeecceE
Confidence            444555554 46775 999999999999987 67   9999999875   458889999954  68998887522  223


Q ss_pred             cCCCCCChHHHHHHHHHHhc
Q 015368          358 VLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       358 ~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .+.|..+..++.+||+.+++
T Consensus        92 ~~~G~~~~~el~~~i~~i~~  111 (113)
T cd02975          92 RYYGLPAGYEFASLIEDIVR  111 (113)
T ss_pred             EEEecCchHHHHHHHHHHHh
Confidence            56787788999999998864

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.34  E-value=0.00073  Score=48.24  Aligned_cols=78  Identities=15%  Similarity=0.183  Sum_probs=60.9

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC--CeEeEEeeCCCCHHHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA--GVRQFQFFGERTRDVISA  154 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~--g~~~~~~~g~~~~~~l~~  154 (408)
                      ++.|..+.|+-|..+...+.++....  .+.+-.||+++++++..+|+. .+|.+.+-..  ........+..+.+.+.+
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~--~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~   78 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF--PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQLRA   78 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS--TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHHHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc--CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHHHH
Confidence            67899999999999999888866554  599999999999999999996 5999655441  112355678899999999


Q ss_pred             HHH
Q 015368          155 WVR  157 (408)
Q Consensus       155 ~i~  157 (408)
                      ||+
T Consensus        79 ~L~   81 (81)
T PF05768_consen   79 WLE   81 (81)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            985

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.30  E-value=0.0025  Score=62.91  Aligned_cols=96  Identities=14%  Similarity=0.128  Sum_probs=75.8

Q ss_pred             EcChhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368           60 SLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        60 ~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      .|+++..+.+.. .++.-+-.|..+.|++|......+++++.... +|..-.+|..+.++++.+|++.++|++++  +|+
T Consensus       103 ~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~  179 (515)
T TIGR03140       103 KLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGALFQDEVEALGIQGVPAVFL--NGE  179 (515)
T ss_pred             CCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchhCHHHHHhcCCcccCEEEE--CCc
Confidence            455555554443 23445788999999999999999999988866 79999999999999999999999999976  553


Q ss_pred             EeEEeeCCCCHHHHHHHHHhHh
Q 015368          139 RQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       139 ~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                        ..+.|..+.+++.+.+.+..
T Consensus       180 --~~~~g~~~~~~~~~~l~~~~  199 (515)
T TIGR03140       180 --EFHNGRMDLAELLEKLEETA  199 (515)
T ss_pred             --EEEecCCCHHHHHHHHhhcc
Confidence              34779899988877776553

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.29  E-value=0.00086  Score=46.36  Aligned_cols=55  Identities=15%  Similarity=0.295  Sum_probs=40.4

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEeCCeE
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      ++.|.++||++|+...+.+.+..      +.+..+|++.+++.    .+..+...+|+++  .+|+.
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~   60 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEF   60 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence            56789999999999998887653      67778888776543    3445777888774  46744

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.27  E-value=0.0062  Score=45.64  Aligned_cols=91  Identities=9%  Similarity=0.134  Sum_probs=69.5

Q ss_pred             ChhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC-CeE
Q 015368           62 NGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA-GVR  139 (408)
Q Consensus        62 ~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~-g~~  139 (408)
                      +.++++.++. ++..++|-|+..--.   .....|.++|+.+++++.|+...   +.++.+++++. .|+++++++ ...
T Consensus         7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~e~   79 (102)
T cd03066           7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATF---DSKVAKKLGLK-MNEVDFYEPFMEE   79 (102)
T ss_pred             CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEEC---cHHHHHHcCCC-CCcEEEeCCCCCC
Confidence            4566888887 778888888776434   45677999999998889997665   55778888876 688999974 434


Q ss_pred             eEEe-eCCCCHHHHHHHHHhH
Q 015368          140 QFQF-FGERTRDVISAWVREK  159 (408)
Q Consensus       140 ~~~~-~g~~~~~~l~~~i~~~  159 (408)
                      ...| .|..+.+.|.+||...
T Consensus        80 ~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          80 PVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             CcccCCCCCCHHHHHHHHHHh
Confidence            4568 7888999999999754

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.24  E-value=0.0056  Score=43.59  Aligned_cols=71  Identities=11%  Similarity=0.159  Sum_probs=51.3

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH---HHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA---KEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS  153 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~  153 (408)
                      +..|..+||++|+.....+++      .++.|-.+|++++++..   +..|...+|++++  +|.    ..+..+.+.|.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~----~~~Gf~~~~l~   70 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL----SWSGFRPDMIN   70 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE----EEecCCHHHHH
Confidence            567889999999998877744      26888899998877643   3457788999954  442    23456778887


Q ss_pred             HHHHhH
Q 015368          154 AWVREK  159 (408)
Q Consensus       154 ~~i~~~  159 (408)
                      +++...
T Consensus        71 ~~~~~~   76 (81)
T PRK10329         71 RLHPAP   76 (81)
T ss_pred             HHHHhh
Confidence            776544

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.21  E-value=0.0012  Score=47.51  Aligned_cols=96  Identities=16%  Similarity=0.294  Sum_probs=68.3

Q ss_pred             cccccccCCccEEEEEeeCC-CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcE-EEEEcc
Q 015368          275 NAQFVFQDPRKQLWLFAPAY-GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV-IAYSAR  352 (408)
Q Consensus       275 ~~~~~~~~~~~~~i~f~~~~-~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~-i~i~~~  352 (408)
                      .|..++....-++++|.... +-...+..++++|...+|.   =..+|+||.+.+ .+.+|+.+.++++..|. +.+..-
T Consensus        11 dfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~---gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~~~~LkHY   86 (112)
T cd03067          11 DFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQ---GTIAWIDCGDSE-SRKLCKKLKVDPSSKPKPVELKHY   86 (112)
T ss_pred             HHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCc---eeEEEEecCChH-HHHHHHHHccCCCCCCCcchhhcc
Confidence            45566666556667777653 3567788999999999998   899999999876 77999999998544333 222222


Q ss_pred             -CCcccc-CCCCCChHHHHHHHHH
Q 015368          353 -DAKKYV-LNGELTLSSIKSFGEE  374 (408)
Q Consensus       353 -~~~~y~-~~~~~~~~~i~~Fi~~  374 (408)
                       +|.+=. |+-.++...+..|+.|
T Consensus        87 KdG~fHkdYdR~~t~kSmv~FlrD  110 (112)
T cd03067          87 KDGDFHTEYNRQLTFKSMVAFLRD  110 (112)
T ss_pred             cCCCccccccchhhHHHHHHHhhC
Confidence             333322 5667888899999875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.15  E-value=0.002  Score=45.16  Aligned_cols=54  Identities=11%  Similarity=0.202  Sum_probs=39.5

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHH----HcCCC-cCcEEEEEeCCe
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK----EYNIL-AYPTLYLFVAGV  138 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~----~~~i~-~~Pt~~~~~~g~  138 (408)
                      ++.|..+||++|......+++.      ++.+-.+|++.+++..+    ..+.. ++|+++  -+|+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~   60 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDV   60 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCE
Confidence            5678999999999988887652      57788888887655433    35666 899773  4663

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=97.15  E-value=0.0017  Score=49.83  Aligned_cols=83  Identities=17%  Similarity=0.215  Sum_probs=61.1

Q ss_pred             eEeeccccccccccCCc-cEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVFQDPR-KQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~-~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +.+++.+++........ ++++ ++.+|+. |......|+++|.++++..+.+.|+.+|++.+. ...+++.+++.  ..
T Consensus         3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~--~~   79 (114)
T cd02992           3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVT--GY   79 (114)
T ss_pred             eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCC--CC
Confidence            56788888887766554 5555 4556776 889999999999988643223899999986544 45778899994  46


Q ss_pred             cEEEEEccC
Q 015368          345 RVIAYSARD  353 (408)
Q Consensus       345 p~i~i~~~~  353 (408)
                      |.++++..+
T Consensus        80 Pt~~lf~~~   88 (114)
T cd02992          80 PTLRYFPPF   88 (114)
T ss_pred             CEEEEECCC
Confidence            888888763

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=97.14  E-value=0.0054  Score=42.60  Aligned_cols=66  Identities=12%  Similarity=0.221  Sum_probs=45.7

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh---HHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD---LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS  153 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~---~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~  153 (408)
                      ++.|..+||+.|.+....+++    .  ++.+..+|++++..   +.+..|...+|.+  +-+|+.    .|  ..+++.
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~----~--~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~----ig--g~~~l~   68 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE----N--GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGEL----IG--GSDDLE   68 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH----c--CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEE----Ee--CHHHHH
Confidence            577899999999999877764    2  57777778776543   3344588899997  446743    23  356676


Q ss_pred             HHH
Q 015368          154 AWV  156 (408)
Q Consensus       154 ~~i  156 (408)
                      +|+
T Consensus        69 ~~l   71 (72)
T cd03029          69 KYF   71 (72)
T ss_pred             HHh
Confidence            664

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=97.13  E-value=0.0046  Score=44.11  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=60.4

Q ss_pred             EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCCCCCh
Q 015368          287 LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTL  365 (408)
Q Consensus       287 ~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~~  365 (408)
                      .+++.+++. |+.....+.+++.+++.+   +.+..+|.+..   +.+.+.+|+..  .|.+++ +  ++ ..+.|..+.
T Consensus         4 ~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~---~~~~~~~~v~~--vPt~~~-~--g~-~~~~G~~~~   71 (82)
T TIGR00411         4 ELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMEN---PQKAMEYGIMA--VPAIVI-N--GD-VEFIGAPTK   71 (82)
T ss_pred             EEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccC---HHHHHHcCCcc--CCEEEE-C--CE-EEEecCCCH
Confidence            455667776 999999999999999888   99999998754   46778899854  688876 3  33 356787889


Q ss_pred             HHHHHHHHHH
Q 015368          366 SSIKSFGEEF  375 (408)
Q Consensus       366 ~~i~~Fi~~~  375 (408)
                      +++.++++..
T Consensus        72 ~~l~~~l~~~   81 (82)
T TIGR00411        72 EELVEAIKKR   81 (82)
T ss_pred             HHHHHHHHhh
Confidence            9999998865

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=97.11  E-value=0.0015  Score=46.39  Aligned_cols=54  Identities=9%  Similarity=0.280  Sum_probs=39.0

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEeCCe
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~  138 (408)
                      ++.|+.+||++|.+....+++.      ++.+-.+|++.+++.    .+..|..++|++  +-+|+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~   58 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV   58 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            3578899999999998888752      466777777766544    334578889997  34664

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PHA03050 glutaredoxin; Provisional

Probab=97.10  E-value=0.0019  Score=48.77  Aligned_cols=66  Identities=11%  Similarity=0.128  Sum_probs=42.4

Q ss_pred             HHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc---c----HhHHHHcCCCcCcEEEEEeCCeE
Q 015368           67 SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---E----KDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        67 ~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~---~----~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      ++.+.+++  ++.|..+|||+|+.....+++..-...   .+-.+|+++   .    ..+.+.-|.+++|+++  -+|+.
T Consensus         7 ~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~If--I~g~~   79 (108)
T PHA03050          7 QQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIF--FGKTS   79 (108)
T ss_pred             HHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEE--ECCEE
Confidence            44555543  667899999999998888776542211   344555554   2    2355667888999983  35643

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=97.09  E-value=0.0036  Score=53.72  Aligned_cols=40  Identities=10%  Similarity=0.254  Sum_probs=32.3

Q ss_pred             CCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEe
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVD  112 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~  112 (408)
                      +++.+|.|+.-.|+||..+.|.+   ..+.+.+.+++.+..+.
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~   79 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH   79 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence            46789999999999999999876   77888887766655443

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=97.06  E-value=0.0093  Score=44.85  Aligned_cols=90  Identities=23%  Similarity=0.374  Sum_probs=67.6

Q ss_pred             ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC-----
Q 015368           62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA-----  136 (408)
Q Consensus        62 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~-----  136 (408)
                      +.++++..+...++++|-|+..--.   .....|.++|+.+++++.|+...   +..+.+++++  .|++++|+.     
T Consensus         7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~~~~   78 (104)
T cd03069           7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTS---DKQLLEKYGY--GEGVVLFRPPRLSN   78 (104)
T ss_pred             CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEC---hHHHHHhcCC--CCceEEEechhhhc
Confidence            3456777777788888888876433   46778999999998889997665   4577889988  688888831     


Q ss_pred             --CeEeEEeeCCCCHHHHHHHHHhH
Q 015368          137 --GVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       137 --g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                        ......|.|..+.+.|.+||...
T Consensus        79 k~de~~~~y~g~~~~~~l~~fi~~~  103 (104)
T cd03069          79 KFEDSSVKFDGDLDSSKIKKFIREN  103 (104)
T ss_pred             ccCcccccccCcCCHHHHHHHHHhh
Confidence              11234689999999999999764

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=97.04  E-value=0.0031  Score=43.95  Aligned_cols=54  Identities=9%  Similarity=0.087  Sum_probs=40.6

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCcCcEEEEEeCCe
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      ++.|..+||++|++....+++      .++.+-.+|++++++    +.+..+-..+|++  |-+|+
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~------~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~   60 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE------KGLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEK   60 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence            567899999999998887775      257788888887664    4555677888988  33563

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=97.03  E-value=0.0087  Score=51.16  Aligned_cols=67  Identities=21%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             cCCCCCCCCccCCCcEEcChhh---HHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC
Q 015368           44 LNNNHTWPLLYAKDVVSLNGKN---FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA  113 (408)
Q Consensus        44 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~  113 (408)
                      ...|..+|   +..+..+++++   +-+..+.++|++|+|-+-.||+-..-.+.|++++++|.+.+.|..|-+
T Consensus        73 a~~G~~AP---ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI  142 (237)
T PF00837_consen   73 AKLGGPAP---NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI  142 (237)
T ss_pred             eeCCCCCC---CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence            34444444   45888898877   335557899999999999999999999999999999998555555443

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=97.02  E-value=0.0018  Score=48.12  Aligned_cols=54  Identities=19%  Similarity=0.232  Sum_probs=36.6

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh-------HHHHcCCCcCcEEEEEeCCe
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD-------LAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~-------~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      ++.|..+|||+|++....+.+.      ++.+..+|++++++       +.+..|...+|++  |-+|+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~   70 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGK   70 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCE
Confidence            5568899999999988766553      35555666665432       3344577899997  44663

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.01  E-value=0.12  Score=51.27  Aligned_cols=169  Identities=11%  Similarity=0.029  Sum_probs=114.3

Q ss_pred             CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE-eEEeeCCCCHHHH
Q 015368           74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR-QFQFFGERTRDVI  152 (408)
Q Consensus        74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~~g~~~~~~l  152 (408)
                      +++-+.++.+.|..|.++...++++++.- +++.+-..+..           ...|++.+.++|+. -.+|.|-..-.++
T Consensus        19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~i~f~g~P~g~Ef   86 (517)
T PRK15317         19 RPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSLD-----------VRKPSFSITRPGEDTGVRFAGIPMGHEF   86 (517)
T ss_pred             CCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccCC-----------CCCCEEEEEcCCccceEEEEecCccHHH
Confidence            44544444558999999999888888765 35665432211           23799999887643 4789998888888


Q ss_pred             HHHHHhHh--CCCcccccChhHHHHHhcc-CCeEEEEEecCCCCcCHHHHHH---HhccCCceeEEEe---cCHhHHhhc
Q 015368          153 SAWVREKM--TLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEELAA---ASKLHSDVNFYQT---TSADVAEFF  223 (408)
Q Consensus       153 ~~~i~~~~--~~~~~~i~~~~~~~~~~~~-~~~~vi~f~~~~~~~~~~~~~~---~a~~~~~~~f~~~---~~~~l~~~~  223 (408)
                      ..||.-.+  +.+-..+ +.+..+.+..- .+.-+..|..+.|..+......   ++....++.+-.+   ..++++++|
T Consensus        87 ~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~  165 (517)
T PRK15317         87 TSLVLALLQVGGHPPKL-DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEAR  165 (517)
T ss_pred             HHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhc
Confidence            88887664  2333444 55555555543 4555777899999987765443   4444456655443   667899999


Q ss_pred             CCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          224 HIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       224 ~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      ++.   +.|++++ +    ....+.|..+.+++.+.+...
T Consensus       166 ~v~---~VP~~~i-~----~~~~~~g~~~~~~~~~~~~~~  197 (517)
T PRK15317        166 NIM---AVPTVFL-N----GEEFGQGRMTLEEILAKLDTG  197 (517)
T ss_pred             CCc---ccCEEEE-C----CcEEEecCCCHHHHHHHHhcc
Confidence            998   5899975 2    124577888888888877653

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=96.98  E-value=0.0072  Score=49.18  Aligned_cols=45  Identities=13%  Similarity=0.130  Sum_probs=33.9

Q ss_pred             cCCCcEEEEEecCCChhHHhh-hHHHHHHHHHhcC-Cc-EEEEEeCcc
Q 015368           71 GKNRNVMVMFYANWCYWSKKL-APEFAAAAKMLKG-EA-DLVMVDAYL  115 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~-~p~~~~~~~~~~~-~v-~~~~v~~~~  115 (408)
                      .++..+++.|.+.||+.|..+ .+.|.+.++++.. ++ .++.|.++.
T Consensus        28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~   75 (155)
T cd03013          28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND   75 (155)
T ss_pred             CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence            333445555567999999999 9999999999875 66 477777653

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=96.92  E-value=0.003  Score=50.95  Aligned_cols=80  Identities=13%  Similarity=0.070  Sum_probs=58.7

Q ss_pred             ceEeeccccccccccC--CccE-EEEEeeCCC-chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcccccchhhhccCCC
Q 015368          267 LVVTLTIHNAQFVFQD--PRKQ-LWLFAPAYG-SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEGVGRRVSQEFGVSG  341 (408)
Q Consensus       267 ~v~~lt~~~~~~~~~~--~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  341 (408)
                      .+.+++.+++......  +.++ +.++.+|+. |+...+.+.++|+++.+ +   +.|+.+|++..   +.+++.+++..
T Consensus        29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~---v~f~~VDvd~~---~~la~~~~V~~  102 (152)
T cd02962          29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN---LKFGKIDIGRF---PNVAEKFRVST  102 (152)
T ss_pred             ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC---eEEEEEECCCC---HHHHHHcCcee
Confidence            4566777777765532  2244 445667776 89999999999999974 5   99999998874   47889999954


Q ss_pred             ----CCCcEEEEEcc
Q 015368          342 ----NAPRVIAYSAR  352 (408)
Q Consensus       342 ----~~~p~i~i~~~  352 (408)
                          ...|.++++..
T Consensus       103 ~~~v~~~PT~ilf~~  117 (152)
T cd02962         103 SPLSKQLPTIILFQG  117 (152)
T ss_pred             cCCcCCCCEEEEEEC
Confidence                23678887775

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.92  E-value=0.0031  Score=46.45  Aligned_cols=59  Identities=19%  Similarity=0.276  Sum_probs=44.2

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC--cc------------------------------cHhHHHHcC
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--YL------------------------------EKDLAKEYN  124 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~--~~------------------------------~~~~~~~~~  124 (408)
                      +..|+.+.|++|..+.+.+.++.....+++.+..+.+  ..                              +...++..|
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            4679999999999999999999866666555554433  21                              123567789


Q ss_pred             CCcCcEEEEEe
Q 015368          125 ILAYPTLYLFV  135 (408)
Q Consensus       125 i~~~Pt~~~~~  135 (408)
                      +.|+|++++.+
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            99999998765

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=96.90  E-value=0.0065  Score=47.45  Aligned_cols=90  Identities=11%  Similarity=0.099  Sum_probs=64.0

Q ss_pred             hhHHHHHhccC-CeEEEEEecCCCCcCHHHHH------HHh-ccCCceeEEEe---c-------------CHhHHhhcCC
Q 015368          170 TDEAERILTVE-SKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQT---T-------------SADVAEFFHI  225 (408)
Q Consensus       170 ~~~~~~~~~~~-~~~vi~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~---~-------------~~~l~~~~~i  225 (408)
                      .++++..++.. ++++|.|+++||.++...-.      .+. .+..++.+..+   .             ...++.++++
T Consensus         3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v   82 (125)
T cd02951           3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV   82 (125)
T ss_pred             HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence            46677788888 89999999999998655432      222 22344544433   1             2578899999


Q ss_pred             CCCCCCCeEEEeecC-CCcccccCCcCCHHHHHHHHhc
Q 015368          226 HPKSKRPALIFLHLE-AGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       226 ~~~~~~p~l~~~~~~-~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      .   +.|+++++..+ +.....+.|..+.+.+..+++.
T Consensus        83 ~---~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~  117 (125)
T cd02951          83 R---FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY  117 (125)
T ss_pred             c---cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence            8   69999999986 4556678888888888888764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=96.89  E-value=0.0098  Score=46.17  Aligned_cols=91  Identities=11%  Similarity=0.023  Sum_probs=60.3

Q ss_pred             ChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe-cC-------------HhHHhhcCCCC-CCC
Q 015368          169 TTDEAERILTVESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT-TS-------------ADVAEFFHIHP-KSK  230 (408)
Q Consensus       169 ~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~-~~-------------~~l~~~~~i~~-~~~  230 (408)
                      +.+++...+++++..++.|+.+||.++   .+.+..+++- .+..++.+ .+             .++.+.+++.. -.+
T Consensus        12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~   90 (122)
T TIGR01295        12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG   90 (122)
T ss_pred             CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence            667888888888888999999999874   4455666533 33444433 11             14556666542 125


Q ss_pred             CCeEEEeecCCCcccccCC-cCCHHHHHHHHh
Q 015368          231 RPALIFLHLEAGKATPFRH-QFTRLAIANFVT  261 (408)
Q Consensus       231 ~p~l~~~~~~~~~~~~y~g-~~~~~~i~~fi~  261 (408)
                      .|++++|+++... -...| ..+.++|.+|+.
T Consensus        91 ~PT~v~~k~Gk~v-~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        91 TPTFVHITDGKQV-SVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             CCEEEEEeCCeEE-EEEeCCCCCHHHHHHHhh
Confidence            8999999987533 34456 456799998874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.014  Score=43.86  Aligned_cols=79  Identities=14%  Similarity=0.240  Sum_probs=56.4

Q ss_pred             cCCeEEEEEecCCCCc---CHHHHHHHhccCCceeEEEe-c--CHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCC
Q 015368          179 VESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT-T--SADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFT  252 (408)
Q Consensus       179 ~~~~~vi~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~-~--~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~  252 (408)
                      .+..+++.|+++||++   ..+.+.+++.-..++.|..+ .  +.++++.+++.   ..|++++|+.+. ....+-|- +
T Consensus        20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~---~~PTf~f~k~g~-~~~~~vGa-~   94 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVK---AMPTFVFYKGGE-EVDEVVGA-N   94 (106)
T ss_pred             CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCce---EeeEEEEEECCE-EEEEEecC-C
Confidence            3577888899999998   56678888854444888764 3  47899999999   589999998765 34444443 3


Q ss_pred             HHHHHHHHhc
Q 015368          253 RLAIANFVTH  262 (408)
Q Consensus       253 ~~~i~~fi~~  262 (408)
                      ...+.+.+..
T Consensus        95 ~~~l~~~i~~  104 (106)
T KOG0907|consen   95 KAELEKKIAK  104 (106)
T ss_pred             HHHHHHHHHh
Confidence            3466665544

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=96.64  E-value=0.047  Score=46.68  Aligned_cols=104  Identities=21%  Similarity=0.274  Sum_probs=72.9

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhc-C---CcEEEEEeCccc---------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLK-G---EADLVMVDAYLE---------------  116 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~-~---~v~~~~v~~~~~---------------  116 (408)
                      .+.+-+++.+.....++++++|.|-=+.|+ -|-.+...+..+.+++. .   ++.++-|.+|.+               
T Consensus        51 ~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~  130 (207)
T COG1999          51 ELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNF  130 (207)
T ss_pred             eeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccC
Confidence            344445566655555899999999989997 89999998888888876 3   555555555432               


Q ss_pred             --------------HhHHHHcCCCc---------------CcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          117 --------------KDLAKEYNILA---------------YPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       117 --------------~~~~~~~~i~~---------------~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                    .+++++|++..               ...+++++ +|+....|.+....+.+.+.+++.+
T Consensus       131 ~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~  204 (207)
T COG1999         131 DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL  204 (207)
T ss_pred             CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence                          23556666552               23456666 8988888887777888888887665

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.0079  Score=42.72  Aligned_cols=51  Identities=12%  Similarity=0.260  Sum_probs=36.8

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-----hHHHHc-CCCcCcEEEE
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEY-NILAYPTLYL  133 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~-~i~~~Pt~~~  133 (408)
                      ++.|..+|||+|++....+.+      .++.+..++.+.+.     +..++- |.+++|++++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~------~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR------KGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH------cCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence            566888999999998877772      25777777766554     333444 7899999865

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=96.57  E-value=0.017  Score=42.74  Aligned_cols=64  Identities=20%  Similarity=0.303  Sum_probs=42.5

Q ss_pred             HHHHHcCCCcEEEEEe----cCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEeCC
Q 015368           66 FSEFMGKNRNVMVMFY----ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAG  137 (408)
Q Consensus        66 ~~~~~~~~~~~~v~f~----a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g  137 (408)
                      .+.++.++ +++|+-.    +||||+|++....+.+.      ++.+..+|++++++.    .+..|...+|.++  -+|
T Consensus         5 v~~~i~~~-~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf--i~g   75 (97)
T TIGR00365         5 IKEQIKEN-PVVLYMKGTPQFPQCGFSARAVQILKAC------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY--VKG   75 (97)
T ss_pred             HHHHhccC-CEEEEEccCCCCCCCchHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE--ECC
Confidence            44555554 4555443    38999999988777663      467778888766543    3445777899884  456


Q ss_pred             e
Q 015368          138 V  138 (408)
Q Consensus       138 ~  138 (408)
                      +
T Consensus        76 ~   76 (97)
T TIGR00365        76 E   76 (97)
T ss_pred             E
Confidence            3

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C

Probab=96.56  E-value=0.0084  Score=49.90  Aligned_cols=31  Identities=16%  Similarity=0.434  Sum_probs=24.5

Q ss_pred             EEecCCChhHHhhhHHHHHHHHHhcCCcEEE
Q 015368           79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLV  109 (408)
Q Consensus        79 ~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~  109 (408)
                      +|..|.|++|-...|.+.++..+++..+.+-
T Consensus         2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~   32 (176)
T PF13743_consen    2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFR   32 (176)
T ss_dssp             EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEE
T ss_pred             eeeCCCChHHHHhHHHHHHHHHHcCCcEEEE
Confidence            5899999999999999999999998855444

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.055  Score=42.71  Aligned_cols=103  Identities=16%  Similarity=0.168  Sum_probs=71.8

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc-----------HhHHH-Hc
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-----------KDLAK-EY  123 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~-----------~~~~~-~~  123 (408)
                      .+..++++.+...--++|+++|-=.|+-|+.-- ....++.++++|++ ++.+...-|..-           .++|+ .|
T Consensus         9 ~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~Y   87 (162)
T COG0386           9 SVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNY   87 (162)
T ss_pred             eeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhcc
Confidence            455666666665456889999999999999755 35678888999987 888888888532           23443 34


Q ss_pred             CCC-----------------------cCc------------EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          124 NIL-----------------------AYP------------TLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       124 ~i~-----------------------~~P------------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ||+                       ..|            +=++++ +|+++.||.-..+++++...|++.+
T Consensus        88 gVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL  160 (162)
T COG0386          88 GVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL  160 (162)
T ss_pred             CceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence            432                       011            344555 8888888888888888887777655

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.46  E-value=0.49  Score=46.81  Aligned_cols=169  Identities=14%  Similarity=0.081  Sum_probs=112.2

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe-EeEEeeCCCCHHH
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRDV  151 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~~  151 (408)
                      +.+.++.|.. .|..|.++...++++++.- +++.+..-+.+.          ...|++.+..+|+ .-.+|.|-..-.+
T Consensus        19 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~i~f~g~P~g~E   86 (515)
T TIGR03140        19 NPVTLVLSAG-SHEKSKELLELLDEIASLS-DKISLTQNTADT----------LRKPSFTILRDGADTGIRFAGIPGGHE   86 (515)
T ss_pred             CCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CCeEEEEecCCc----------CCCCeEEEecCCcccceEEEecCCcHH
Confidence            3344555555 7999999988888888764 466665443222          2469998887764 3478999888888


Q ss_pred             HHHHHHhHh--CCCcccccChhHHHHHhcc-CCeEEEEEecCCCCcCHHHHHH---HhccCCceeEEE---ecCHhHHhh
Q 015368          152 ISAWVREKM--TLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEELAA---ASKLHSDVNFYQ---TTSADVAEF  222 (408)
Q Consensus       152 l~~~i~~~~--~~~~~~i~~~~~~~~~~~~-~~~~vi~f~~~~~~~~~~~~~~---~a~~~~~~~f~~---~~~~~l~~~  222 (408)
                      +..||.-.+  +.+-..+ +.+..+.+..- .+.-+..|..+.|..+......   ++....++..-.   ...++++++
T Consensus        87 f~s~i~~i~~~~~~~~~l-~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~  165 (515)
T TIGR03140        87 FTSLVLAILQVGGHGPKL-DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEA  165 (515)
T ss_pred             HHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHh
Confidence            888887664  2333445 55555555543 4555777889999987765443   343445565443   366789999


Q ss_pred             cCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       223 ~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      |++.   +.|++++-     ....+.|..+.+++.+-+..
T Consensus       166 ~~v~---~VP~~~i~-----~~~~~~g~~~~~~~~~~l~~  197 (515)
T TIGR03140       166 LGIQ---GVPAVFLN-----GEEFHNGRMDLAELLEKLEE  197 (515)
T ss_pred             cCCc---ccCEEEEC-----CcEEEecCCCHHHHHHHHhh
Confidence            9998   58999852     12457788777777666643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=96.38  E-value=0.024  Score=42.86  Aligned_cols=68  Identities=24%  Similarity=0.361  Sum_probs=50.7

Q ss_pred             hHHHHHhc--cCCeEEEEEecCCCCcC---HHHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCC
Q 015368          171 DEAERILT--VESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA  241 (408)
Q Consensus       171 ~~~~~~~~--~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~  241 (408)
                      +++++.+.  .++.++|-|+++||.++   .+.+.++| ++...+.|+.+   ..+++++.|++.   ..|+.++|+++.
T Consensus         3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~---amPtfvffkngk   79 (114)
T cd02986           3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDIS---YIPSTIFFFNGQ   79 (114)
T ss_pred             HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCce---eCcEEEEEECCc
Confidence            45555554  47889999999999984   45677777 44433777765   667899999998   379999998764

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=96.36  E-value=0.014  Score=44.79  Aligned_cols=85  Identities=12%  Similarity=0.081  Sum_probs=59.5

Q ss_pred             CccEEEEEee--------CCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc----cccchhhhccCCCCCCcEEEE
Q 015368          283 PRKQLWLFAP--------AYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG----VGRRVSQEFGVSGNAPRVIAY  349 (408)
Q Consensus       283 ~~~~~i~f~~--------~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~----~~~~l~~~~~i~~~~~p~i~i  349 (408)
                      +.|+++.|..        |+. |......+++++.++.++   +.|+.+|.++..    -+..+...+++. ...|.+++
T Consensus        21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~w~d~~~~~~~~~~I~-~~iPT~~~   96 (119)
T cd02952          21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPYWRDPNNPFRTDPKLT-TGVPTLLR   96 (119)
T ss_pred             CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcccccCcchhhHhccCcc-cCCCEEEE
Confidence            3466665554        776 899999999999999977   999999986521    034677888885 45889998


Q ss_pred             EccCCccccCCCCCChHHHHHHH
Q 015368          350 SARDAKKYVLNGELTLSSIKSFG  372 (408)
Q Consensus       350 ~~~~~~~y~~~~~~~~~~i~~Fi  372 (408)
                      ++. +.+..=..=++.+.+..|+
T Consensus        97 ~~~-~~~l~~~~c~~~~~~~~~~  118 (119)
T cd02952          97 WKT-PQRLVEDECLQADLVEMFF  118 (119)
T ss_pred             EcC-CceecchhhcCHHHHHHhh
Confidence            864 4444323345666676665

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=96.25  E-value=0.0073  Score=53.23  Aligned_cols=92  Identities=21%  Similarity=0.405  Sum_probs=72.6

Q ss_pred             HHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEe-CcccHhHHHHcCCCcCcEEEEEeCCeEeEEee
Q 015368           68 EFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD-AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF  144 (408)
Q Consensus        68 ~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~-~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~  144 (408)
                      ..+..  ..++-+.||++||+..+...|+++-....+.. +....|+ ....+.+..++++.+.|++.+.... -..+|.
T Consensus        69 ~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t-~~~~~~  146 (319)
T KOG2640|consen   69 DAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT-CPASYR  146 (319)
T ss_pred             HhhccccCCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhhcccchhccccccCCcceeeccc-cchhhc
Confidence            34444  56899999999999999999999998888862 3333332 2233567889999999999888865 678999


Q ss_pred             CCCCHHHHHHHHHhHhC
Q 015368          145 GERTRDVISAWVREKMT  161 (408)
Q Consensus       145 g~~~~~~l~~~i~~~~~  161 (408)
                      |.++...|.+|..+.++
T Consensus       147 ~~r~l~sLv~fy~~i~~  163 (319)
T KOG2640|consen  147 GERDLASLVNFYTEITP  163 (319)
T ss_pred             ccccHHHHHHHHHhhcc
Confidence            99999999999988875

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=96.20  E-value=0.032  Score=46.33  Aligned_cols=59  Identities=17%  Similarity=0.188  Sum_probs=42.6

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhcC---CcEEEEEeCcc
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG---EADLVMVDAYL  115 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~  115 (408)
                      .+.+-+++.+......+|+++|.|.=+.|+ .|-.....+.++.+.++.   ++.++.|.+|.
T Consensus        36 ~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP   98 (174)
T PF02630_consen   36 TLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP   98 (174)
T ss_dssp             EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred             EEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence            444555555554444789999999999995 899888888888777653   67888887764

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=96.11  E-value=0.051  Score=44.70  Aligned_cols=108  Identities=16%  Similarity=0.187  Sum_probs=76.1

Q ss_pred             CCCcEEcChhhHHHHH---cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           55 AKDVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      ...|..+++.+|.+-+   .++-.|+|..|...-+-|.-....++.++..|. .++|+++-....   ...|-=...||+
T Consensus        90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c---IpNYPe~nlPTl  165 (240)
T KOG3170|consen   90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC---IPNYPESNLPTL  165 (240)
T ss_pred             ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---cCCCcccCCCeE
Confidence            3577888898887544   345578999999999999999999999999998 688887753321   122444568999


Q ss_pred             EEEeCCeEeEEeeC------C-CCHHHHHHHHHhHhCCCcccc
Q 015368          132 YLFVAGVRQFQFFG------E-RTRDVISAWVREKMTLGTYSI  167 (408)
Q Consensus       132 ~~~~~g~~~~~~~g------~-~~~~~l~~~i~~~~~~~~~~i  167 (408)
                      ++|..|.+...+.|      . .+.+++..++- ..++.++..
T Consensus       166 ~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~-qaga~l~d~  207 (240)
T KOG3170|consen  166 LVYHHGALKKQMIGLLELGGMNLTMEDVEDFLV-QAGAALTDG  207 (240)
T ss_pred             EEeecchHHhheehhhhhcCCcCCHHHHHHHHH-hcccccccc
Confidence            99999976666654      2 34566655554 333444443

>PRK10638 glutaredoxin 3; Provisional

Probab=96.08  E-value=0.025  Score=40.53  Aligned_cols=54  Identities=6%  Similarity=0.167  Sum_probs=39.2

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCcCcEEEEEeCCe
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      ++.|..+||++|++....+++.      ++.+..+|++++++    +.+..+...+|+++  .+|+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~   61 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQ   61 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCE
Confidence            5577889999999988877752      56777788876653    34455778899873  3673

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.044  Score=46.85  Aligned_cols=97  Identities=12%  Similarity=0.157  Sum_probs=70.7

Q ss_pred             CcccccChhHHHHHhcc--CCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368          163 GTYSITTTDEAERILTV--ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~--~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l  234 (408)
                      ++..+++..+++.-+..  .+.++|-|+..||+++   .+.|.+++.......|..+   ..+..+.-+|++.   .|+.
T Consensus         2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~a---mPTF   78 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNA---MPTF   78 (288)
T ss_pred             CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCccc---CceE
Confidence            45677888888777754  4588889999999994   5678888855566667665   4556778889984   7999


Q ss_pred             EEeecCCCcccccCCcCCHHHHHHHHhcCC
Q 015368          235 IFLHLEAGKATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       235 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                      ++|+++. +...++|- +...|.+-+.++.
T Consensus        79 iff~ng~-kid~~qGA-d~~gLe~kv~~~~  106 (288)
T KOG0908|consen   79 IFFRNGV-KIDQIQGA-DASGLEEKVAKYA  106 (288)
T ss_pred             EEEecCe-EeeeecCC-CHHHHHHHHHHHh
Confidence            9999864 66777776 5566666665543

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=95.96  E-value=0.028  Score=40.96  Aligned_cols=61  Identities=18%  Similarity=0.363  Sum_probs=40.3

Q ss_pred             HHcCCCcEEEEEec----CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEeCCe
Q 015368           69 FMGKNRNVMVMFYA----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        69 ~~~~~~~~~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~  138 (408)
                      .+++ ++++|.-..    |||++|++....+++.      ++.+..+|+++++++    .+..|-..+|++  |-+|+
T Consensus         4 ~i~~-~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~   72 (90)
T cd03028           4 LIKE-NPVVLFMKGTPEEPRCGFSRKVVQILNQL------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGE   72 (90)
T ss_pred             hhcc-CCEEEEEcCCCCCCCCcHHHHHHHHHHHc------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCE
Confidence            3434 455554332    7999999988777664      367777787766544    344577889997  34674

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=95.82  E-value=0.063  Score=53.52  Aligned_cols=97  Identities=14%  Similarity=0.179  Sum_probs=67.8

Q ss_pred             cccccChhHHHHHhc----cCCeEEEEEecCCCCcCHHHHH------HHhccCCceeEEEe--c-----CHhHHhhcCCC
Q 015368          164 TYSITTTDEAERILT----VESKLVLGFLHDLEGMESEELA------AASKLHSDVNFYQT--T-----SADVAEFFHIH  226 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~----~~~~~vi~f~~~~~~~~~~~~~------~~a~~~~~~~f~~~--~-----~~~l~~~~~i~  226 (408)
                      ...+.+.+++++.++    .+++++|.|+.+||.++...-.      +..+...++.+..+  +     +.++.+++++.
T Consensus       454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~  533 (571)
T PRK00293        454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL  533 (571)
T ss_pred             ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence            455677788877664    3578999999999998654321      22222234555443  1     35788999998


Q ss_pred             CCCCCCeEEEeecCCCc--ccccCCcCCHHHHHHHHhcC
Q 015368          227 PKSKRPALIFLHLEAGK--ATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       227 ~~~~~p~l~~~~~~~~~--~~~y~g~~~~~~i~~fi~~~  263 (408)
                         +.|++++|+.++..  ...+.|..+.+++.+++++.
T Consensus       534 ---g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~  569 (571)
T PRK00293        534 ---GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL  569 (571)
T ss_pred             ---CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence               69999999865433  35778999999999999764

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.69  E-value=0.029  Score=55.17  Aligned_cols=79  Identities=18%  Similarity=0.265  Sum_probs=66.0

Q ss_pred             cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcccHhHHHHc--------CCCcCc
Q 015368           61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDLAKEY--------NILAYP  129 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~i~~~P  129 (408)
                      =..+.|..+-.++||++|-.-.+||..|+-|..+=   .++|+.++.++.-++||-++-+++-+.|        |-.|.|
T Consensus        31 W~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWP  110 (667)
T COG1331          31 WGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWP  110 (667)
T ss_pred             cCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCc
Confidence            45788998889999999999999999999997763   6678888888999999999988776555        356899


Q ss_pred             EEEEEe-CCeE
Q 015368          130 TLYLFV-AGVR  139 (408)
Q Consensus       130 t~~~~~-~g~~  139 (408)
                      -.+|.- +|+.
T Consensus       111 LtVfLTPd~kP  121 (667)
T COG1331         111 LTVFLTPDGKP  121 (667)
T ss_pred             eeEEECCCCce
Confidence            998887 7754

>PRK10824 glutaredoxin-4; Provisional

Probab=95.68  E-value=0.035  Score=42.26  Aligned_cols=63  Identities=19%  Similarity=0.370  Sum_probs=39.2

Q ss_pred             HHHHHcCCCcEEEEEec----CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH----HHcCCCcCcEEEEEeCC
Q 015368           66 FSEFMGKNRNVMVMFYA----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFVAG  137 (408)
Q Consensus        66 ~~~~~~~~~~~~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~i~~~Pt~~~~~~g  137 (408)
                      .++.+.++ +|+|.-..    ||||+|++....+...      ++.+..+|++++.++.    +.-|-..+|.+++  +|
T Consensus         8 v~~~I~~~-~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G   78 (115)
T PRK10824          8 IQRQIAEN-PILLYMKGSPKLPSCGFSAQAVQALSAC------GERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DG   78 (115)
T ss_pred             HHHHHhcC-CEEEEECCCCCCCCCchHHHHHHHHHHc------CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CC
Confidence            44556554 45554333    6999999988877665      2444556666655443    3346678888754  66

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.24  E-value=0.093  Score=39.11  Aligned_cols=65  Identities=18%  Similarity=0.339  Sum_probs=41.8

Q ss_pred             HHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-h----HHHHcCCCcCcEEEEEeCCe
Q 015368           66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-D----LAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-~----~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      ++.++.++ ++ |.|..+||+.|+.+...|.+    ++....++.+|-+++. +    +.+.-+.+.+|.+++  +|+
T Consensus         7 v~~~i~~~-~V-VifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk   76 (104)
T KOG1752|consen    7 VRKMISEN-PV-VIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK   76 (104)
T ss_pred             HHHHhhcC-CE-EEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence            44555444 34 44889999999997666666    4446677777766553 2    333345678898755  663

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=95.19  E-value=0.069  Score=44.38  Aligned_cols=103  Identities=16%  Similarity=0.220  Sum_probs=79.7

Q ss_pred             CCcEEc-ChhhHHHHHcCC---CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           56 KDVVSL-NGKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        56 ~~~~~l-~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      ..|.++ +++.|-..+.+.   -.++|..|-+.-+-|..+-..+.-+|.+|. .++|.++-... -...++|...++|++
T Consensus       138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-~vKFckikss~-~gas~~F~~n~lP~L  215 (273)
T KOG3171|consen  138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-IVKFCKIKSSN-TGASDRFSLNVLPTL  215 (273)
T ss_pred             ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-ceeEEEeeecc-ccchhhhcccCCceE
Confidence            466777 467888877543   367889999999999999999999999998 78999887443 456789999999999


Q ss_pred             EEEeCCeEeEEee-------CCCCHHHHHHHHHhHh
Q 015368          132 YLFVAGVRQFQFF-------GERTRDVISAWVREKM  160 (408)
Q Consensus       132 ~~~~~g~~~~~~~-------g~~~~~~l~~~i~~~~  160 (408)
                      .+|++|+.+..|.       ....+.++..|+++.-
T Consensus       216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~g  251 (273)
T KOG3171|consen  216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYG  251 (273)
T ss_pred             EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence            9999997554332       2456677777777664

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=95.09  E-value=0.67  Score=34.93  Aligned_cols=90  Identities=12%  Similarity=0.169  Sum_probs=63.3

Q ss_pred             ChhhHHHHHcCC-CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC---
Q 015368           62 NGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG---  137 (408)
Q Consensus        62 ~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g---  137 (408)
                      +.++++..+... +.++|-|+..--.   .....|.++|+.+++++.|+...   +..+.+++++. .|.+++|+.-   
T Consensus         7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~~~~   79 (107)
T cd03068           7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTF---DSEIFKSLKVS-PGQLVVFQPEKFQ   79 (107)
T ss_pred             CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEC---hHHHHHhcCCC-CCceEEECcHHHh
Confidence            345677777665 7777777766433   46778999999998889997665   45778888887 4777777311   


Q ss_pred             ----eEeEEeeCC-CCHHH-HHHHHHh
Q 015368          138 ----VRQFQFFGE-RTRDV-ISAWVRE  158 (408)
Q Consensus       138 ----~~~~~~~g~-~~~~~-l~~~i~~  158 (408)
                          .....|.|. .+.++ |.+||+.
T Consensus        80 ~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          80 SKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             hhcCcceeeeeccccchHHHHHHHHhc
Confidence                124567877 67656 9999975

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=94.93  E-value=0.16  Score=35.52  Aligned_cols=68  Identities=10%  Similarity=0.049  Sum_probs=48.3

Q ss_pred             EEEecCCCCcCHH---HHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcC-CHHHHHHH
Q 015368          185 LGFLHDLEGMESE---ELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF-TRLAIANF  259 (408)
Q Consensus       185 i~f~~~~~~~~~~---~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~-~~~~i~~f  259 (408)
                      |-|+.+||.++..   .+..++ ++...+.+..+.+.+.+.++++.   +.|++++  ++  . ..+.|.. +.+.+.++
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~---~vPti~i--~G--~-~~~~G~~~~~~~l~~~   74 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVT---ATPGVAV--DG--E-LVIMGKIPSKEEIKEI   74 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCC---cCCEEEE--CC--E-EEEEeccCCHHHHHHH
Confidence            5578899998544   455555 56677888888877778889998   5899998  22  2 2377753 44778777


Q ss_pred             H
Q 015368          260 V  260 (408)
Q Consensus       260 i  260 (408)
                      +
T Consensus        75 l   75 (76)
T TIGR00412        75 L   75 (76)
T ss_pred             h
Confidence            6

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=94.92  E-value=0.047  Score=52.39  Aligned_cols=139  Identities=19%  Similarity=0.160  Sum_probs=93.9

Q ss_pred             ceEeeccccccccccCCc--cEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          267 LVVTLTIHNAQFVFQDPR--KQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       267 ~v~~lt~~~~~~~~~~~~--~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      .+.+|+.+++...+-...  .+|=+|.+|++ |..+...|+++|+...+=.+-+..+-+||.+.. +..+|+.++|+.  
T Consensus        40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~V~~--  116 (606)
T KOG1731|consen   40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFSVSG--  116 (606)
T ss_pred             CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcCCCC--
Confidence            367888888886554443  44557888988 999999999999987642233889999998776 899999999954  


Q ss_pred             CcEEEEEccC--Cccc--cCCCCCChHHHHHHHHHHhcCcc---cccccc---Cchh------hhcCccC--Cccceeee
Q 015368          344 PRVIAYSARD--AKKY--VLNGELTLSSIKSFGEEFLEDKL---LNQSDQ---ISET------ILKLPSQ--SRASYQLR  405 (408)
Q Consensus       344 ~p~i~i~~~~--~~~y--~~~~~~~~~~i~~Fi~~~~~gk~---~~kse~---iP~~------~~~~~~~--~~~~~~~~  405 (408)
                      .|.+.++..+  +..+  .+.+.....++..++..-++..-   .+-+-|   .+++      ++...++  +|-.++++
T Consensus       117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e  196 (606)
T KOG1731|consen  117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFE  196 (606)
T ss_pred             CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEe
Confidence            6899888773  2112  12445556778777776666555   233444   2222      5665444  36666666


Q ss_pred             ccC
Q 015368          406 THE  408 (408)
Q Consensus       406 ~~~  408 (408)
                      +++
T Consensus       197 ~~~  199 (606)
T KOG1731|consen  197 TEP  199 (606)
T ss_pred             cCC
Confidence            653

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=94.38  E-value=0.62  Score=37.68  Aligned_cols=89  Identities=10%  Similarity=0.150  Sum_probs=57.0

Q ss_pred             cEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc-ccc------cchh-hhccC-CCCCCcEEEEEccCC
Q 015368          285 KQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE-GVG------RRVS-QEFGV-SGNAPRVIAYSARDA  354 (408)
Q Consensus       285 ~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~-~~~------~~l~-~~~~i-~~~~~p~i~i~~~~~  354 (408)
                      .++.++.+||. |.+..+.+++++++++-.   +..+-+|.... .|.      .... ..++. .....|..++++.++
T Consensus        53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~---Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G  129 (153)
T TIGR02738        53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLP---VYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT  129 (153)
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHcCCc---EEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence            45667778887 999999999999998644   55544443210 111      1111 23311 123468888888854


Q ss_pred             c-cc-cCCCCCChHHHHHHHHHHh
Q 015368          355 K-KY-VLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       355 ~-~y-~~~~~~~~~~i~~Fi~~~~  376 (408)
                      . .+ ...|.++.+++.+.++.++
T Consensus       130 ~~i~~~~~G~~s~~~l~~~I~~ll  153 (153)
T TIGR02738       130 RKAYPVLQGAVDEAELANRMDEIL  153 (153)
T ss_pred             CEEEEEeecccCHHHHHHHHHHhC
Confidence            4 34 5788999999998888754

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=94.33  E-value=0.11  Score=49.56  Aligned_cols=54  Identities=15%  Similarity=0.250  Sum_probs=39.4

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH---HH---------cCCCcCcEEEEEeCCe
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA---KE---------YNILAYPTLYLFVAGV  138 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~---~~---------~~i~~~Pt~~~~~~g~  138 (408)
                      ++.|..+|||+|++....+++.      ++.+-.+|+++++...   ++         .|.+++|++++  +|+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~   69 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV   69 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence            6778999999999987766652      5888888888766322   22         36788999965  553

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=93.91  E-value=0.83  Score=37.66  Aligned_cols=90  Identities=19%  Similarity=0.250  Sum_probs=61.5

Q ss_pred             CccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc-------------------cccchhhhccCCC
Q 015368          283 PRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG-------------------VGRRVSQEFGVSG  341 (408)
Q Consensus       283 ~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~-------------------~~~~l~~~~~i~~  341 (408)
                      +.+.++. +.++|. |......+.++++++.+.  ++.++.++.++..                   -...+.+.||+. 
T Consensus        61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-  137 (173)
T PRK03147         61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG-  137 (173)
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC-
Confidence            3455444 445555 888889999999998753  1777777765321                   124566788884 


Q ss_pred             CCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHh
Q 015368          342 NAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       342 ~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                       ..|.+++++.+|+ .+.+.|..+.+++.++++++.
T Consensus       138 -~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~~  172 (173)
T PRK03147        138 -PLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKIK  172 (173)
T ss_pred             -CcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHhc
Confidence             3688888887444 335688889999999998763

>TIGR02740 TraF-like TraF-like protein

Probab=93.86  E-value=0.33  Score=43.41  Aligned_cols=88  Identities=7%  Similarity=-0.019  Sum_probs=61.6

Q ss_pred             cEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc------ccccchhhhccCCCCCCcEEEEEcc-CCcc
Q 015368          285 KQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE------GVGRRVSQEFGVSGNAPRVIAYSAR-DAKK  356 (408)
Q Consensus       285 ~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~------~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~  356 (408)
                      .++.++..+|. |......+++++++++-.   +..+-+|....      .....+.+.+|+.  ..|.+++++. ++..
T Consensus       169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg~~---Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~--~vPtl~Lv~~~~~~v  243 (271)
T TIGR02740       169 GLFFFFKSDCPYCHQQAPILQAFEDRYGIE---VLPVSVDGGPLPGFPNARPDAGQAQQLKIR--TVPAVFLADPDPNQF  243 (271)
T ss_pred             EEEEEECCCCccHHHHhHHHHHHHHHcCcE---EEEEeCCCCccccCCcccCCHHHHHHcCCC--cCCeEEEEECCCCEE
Confidence            34456667776 999999999999999755   65566654321      0123466888884  4789998887 4444


Q ss_pred             cc-CCCCCChHHHHHHHHHHhc
Q 015368          357 YV-LNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       357 y~-~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .. ..|.++.++|.+.+..+..
T Consensus       244 ~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       244 TPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             EEEEeCCCCHHHHHHHHHHHhc
Confidence            43 4578999999999887765

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=93.53  E-value=0.47  Score=41.00  Aligned_cols=105  Identities=17%  Similarity=0.206  Sum_probs=67.7

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhcC--Cc----EEEEEeCcc--------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG--EA----DLVMVDAYL--------------  115 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~--~v----~~~~v~~~~--------------  115 (408)
                      .+.+-+++.+.+.-..+|.++++|-=+.|| -|-.+...+.++.++.+.  ++    .|+.||-..              
T Consensus       123 ~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~  202 (280)
T KOG2792|consen  123 SLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFH  202 (280)
T ss_pred             EEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcC
Confidence            445555555554445789999999999998 688888777777776655  22    345555321              


Q ss_pred             ------------cHhHHHHcCCCcC--c-----------E--EEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          116 ------------EKDLAKEYNILAY--P-----------T--LYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       116 ------------~~~~~~~~~i~~~--P-----------t--~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                                  -.++|++|.|..-  |           +  +++++ +|+.+.-|--.++++++.+-|.++..
T Consensus       203 pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~  276 (280)
T KOG2792|consen  203 PKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA  276 (280)
T ss_pred             hhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence                        1346777776422  2           3  34445 78555555456899999888877653

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=93.53  E-value=0.1  Score=39.64  Aligned_cols=85  Identities=21%  Similarity=0.392  Sum_probs=54.2

Q ss_pred             CccEEEEEe-eCCC-chHHHHHHH---HHHHHhcCCcceEEEEEEEcCCcc-----------------cccchhhhccCC
Q 015368          283 PRKQLWLFA-PAYG-SDKVILTFE---EVAKALKGKVNMLLHVYVEMNSEG-----------------VGRRVSQEFGVS  340 (408)
Q Consensus       283 ~~~~~i~f~-~~~~-~~~~~~~~~---~vA~~~~~~~~~i~f~~vd~~~~~-----------------~~~~l~~~~~i~  340 (408)
                      +.+.+++|. ++|. |++....+.   +++..++.+   +.++.++.....                 -...+++.+|+.
T Consensus         5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~   81 (112)
T PF13098_consen    5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDD---FQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN   81 (112)
T ss_dssp             SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCE---CEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcC---eEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence            446666554 4555 777766666   455666656   788888876532                 123578889995


Q ss_pred             CCCCcEEEEEccCCc-cccCCCCCChHHHHHHH
Q 015368          341 GNAPRVIAYSARDAK-KYVLNGELTLSSIKSFG  372 (408)
Q Consensus       341 ~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi  372 (408)
                      .  .|.+++.+.+|+ .+.+.|-.+.+++.+++
T Consensus        82 g--tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   82 G--TPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             S--SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             c--cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence            5  689999987555 45678988999988764

...

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=93.48  E-value=0.4  Score=42.59  Aligned_cols=99  Identities=13%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             CcccccChhHHHHHhcc---CCeEEEEEecCCCCc---CHHHHHHHhccCCceeEEEecCH--hHHhhcCCCCCCCCCeE
Q 015368          163 GTYSITTTDEAERILTV---ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~---~~~~vi~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~--~l~~~~~i~~~~~~p~l  234 (408)
                      .+.+|.+.+++-..+..   ...+||-||.+....   ....+..+|.....++|..+...  .+...|...   +.|+|
T Consensus       126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~---~LPtl  202 (265)
T PF02114_consen  126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDK---NLPTL  202 (265)
T ss_dssp             SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TT---C-SEE
T ss_pred             eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCccc---CCCEE
Confidence            45567666666666643   234555566554332   45556778877888999876433  267788887   58999


Q ss_pred             EEeecCCC--ccccc----CCcCCHHHHHHHHhcCC
Q 015368          235 IFLHLEAG--KATPF----RHQFTRLAIANFVTHTK  264 (408)
Q Consensus       235 ~~~~~~~~--~~~~y----~g~~~~~~i~~fi~~~~  264 (408)
                      ++|+.+.-  ..+.+    ..+++..+|..|+..+-
T Consensus       203 lvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G  238 (265)
T PF02114_consen  203 LVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG  238 (265)
T ss_dssp             EEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred             EEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence            99997641  11121    23477899999998654

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=93.34  E-value=0.3  Score=37.66  Aligned_cols=74  Identities=5%  Similarity=0.043  Sum_probs=47.5

Q ss_pred             CCeEEEEEecCCCCcCHHHHHHHhccCC--------------------------ceeEEEecCHhHHhhcCCCCCCCCCe
Q 015368          180 ESKLVLGFLHDLEGMESEELAAASKLHS--------------------------DVNFYQTTSADVAEFFHIHPKSKRPA  233 (408)
Q Consensus       180 ~~~~vi~f~~~~~~~~~~~~~~~a~~~~--------------------------~~~f~~~~~~~l~~~~~i~~~~~~p~  233 (408)
                      ++.+++.|+.+||..+......+..+..                          .+.+....+..+++.|++.   +.|+
T Consensus        20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~---~~P~   96 (123)
T cd03011          20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVS---VTPA   96 (123)
T ss_pred             CCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCC---cccE
Confidence            4678888888888865444322221111                          1222223445788899998   5899


Q ss_pred             EEEeecCCCcccccCCcCCHHHHH
Q 015368          234 LIFLHLEAGKATPFRHQFTRLAIA  257 (408)
Q Consensus       234 l~~~~~~~~~~~~y~g~~~~~~i~  257 (408)
                      ++++.+++ ....+.|-.+.+.|.
T Consensus        97 ~~vid~~g-i~~~~~g~~~~~~~~  119 (123)
T cd03011          97 IVIVDPGG-IVFVTTGVTSEWGLR  119 (123)
T ss_pred             EEEEcCCC-eEEEEeccCCHHHHH
Confidence            99998765 556677888777764

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=93.06  E-value=0.79  Score=34.91  Aligned_cols=90  Identities=20%  Similarity=0.223  Sum_probs=61.3

Q ss_pred             CccEEEEEee-CC-CchHHHH-HHH--HHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCc-
Q 015368          283 PRKQLWLFAP-AY-GSDKVIL-TFE--EVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAK-  355 (408)
Q Consensus       283 ~~~~~i~f~~-~~-~~~~~~~-~~~--~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~-  355 (408)
                      ++++++.+.. ++ .|+.... .|.  ++.+.++.+   +.+..+|.++.+ ...+++.+++.  ..|.+++++. ++. 
T Consensus        17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~e-~~~~~~~~~~~--~~P~~~~i~~~~g~~   90 (114)
T cd02958          17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSSE-GQRFLQSYKVD--KYPHIAIIDPRTGEV   90 (114)
T ss_pred             CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCcc-HHHHHHHhCcc--CCCeEEEEeCccCcE
Confidence            3355554444 33 2555433 343  577777777   888888987655 56788888884  4789888887 443 


Q ss_pred             cccCCCCCChHHHHHHHHHHhcC
Q 015368          356 KYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       356 ~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      .+.+.|..+++++.+-++.+..+
T Consensus        91 l~~~~G~~~~~~f~~~L~~~~~~  113 (114)
T cd02958          91 LKVWSGNITPEDLLSQLIEFLEE  113 (114)
T ss_pred             eEEEcCCCCHHHHHHHHHHHHhc
Confidence            55678999999888888877653

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=92.56  E-value=1.5  Score=36.76  Aligned_cols=36  Identities=14%  Similarity=0.301  Sum_probs=28.4

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEE
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMV  111 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v  111 (408)
                      .+..|+..-||+|-...+.+.++.+.+.+ .|.+.-+
T Consensus         1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~   37 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF   37 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence            46789999999999999999999999843 4444333

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=92.48  E-value=0.8  Score=30.86  Aligned_cols=55  Identities=11%  Similarity=0.160  Sum_probs=41.6

Q ss_pred             EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEE
Q 015368          287 LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYS  350 (408)
Q Consensus       287 ~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~  350 (408)
                      .+++.+++. |+.....+++++..+ .+   +.|..+|.++.   +.+.+.+|+..  .|.+++-
T Consensus         4 ~~f~~~~C~~C~~~~~~l~~l~~~~-~~---i~~~~id~~~~---~~l~~~~~i~~--vPti~i~   59 (67)
T cd02973           4 EVFVSPTCPYCPDAVQAANRIAALN-PN---ISAEMIDAAEF---PDLADEYGVMS--VPAIVIN   59 (67)
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHhC-Cc---eEEEEEEcccC---HhHHHHcCCcc--cCEEEEC
Confidence            455667776 889999999998765 35   99999998764   46778999943  6888764

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=92.21  E-value=0.54  Score=45.82  Aligned_cols=96  Identities=15%  Similarity=0.187  Sum_probs=66.9

Q ss_pred             ccccChhHHHHHhccCC--eEEEEEecCCCCcCHHH----HHHH--hccCCceeEE---Ee----cCHhHHhhcCCCCCC
Q 015368          165 YSITTTDEAERILTVES--KLVLGFLHDLEGMESEE----LAAA--SKLHSDVNFY---QT----TSADVAEFFHIHPKS  229 (408)
Q Consensus       165 ~~i~~~~~~~~~~~~~~--~~vi~f~~~~~~~~~~~----~~~~--a~~~~~~~f~---~~----~~~~l~~~~~i~~~~  229 (408)
                      ..+.+..+++..+.+++  ++++-|+.+||-.+...    |.+.  .....++..-   .+    .+.++.+++++-   
T Consensus       457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~---  533 (569)
T COG4232         457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVF---  533 (569)
T ss_pred             hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCC---
Confidence            44556668999997766  99999999999764332    2211  1122233332   22    234567788876   


Q ss_pred             CCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       230 ~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      +.|++++|..++..+....|.++.+.+.+|+++.
T Consensus       534 G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         534 GVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             CCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence            6899999998777777799999999999999764

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=92.01  E-value=1.1  Score=34.68  Aligned_cols=70  Identities=11%  Similarity=0.033  Sum_probs=44.8

Q ss_pred             ChhHHHHHhccCCeEEEEEecCCCCcCHHHHH------HHh-ccCCceeEEEe---cCHhHHh--------hcCCCCCCC
Q 015368          169 TTDEAERILTVESKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQT---TSADVAE--------FFHIHPKSK  230 (408)
Q Consensus       169 ~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~---~~~~l~~--------~~~i~~~~~  230 (408)
                      +.+.++...+.+++++|.|+++||..+...-.      .++ .+..++.+..+   ..+++.+        .+++.   |
T Consensus         4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~---G   80 (124)
T cd02955           4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQG---G   80 (124)
T ss_pred             CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCC---C
Confidence            34567777788889999999999998654322      222 23345544443   3334433        24665   7


Q ss_pred             CCeEEEeecCC
Q 015368          231 RPALIFLHLEA  241 (408)
Q Consensus       231 ~p~l~~~~~~~  241 (408)
                      +|+++++.+.+
T Consensus        81 ~Pt~vfl~~~G   91 (124)
T cd02955          81 WPLNVFLTPDL   91 (124)
T ss_pred             CCEEEEECCCC
Confidence            99999998765

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=91.84  E-value=1.1  Score=39.46  Aligned_cols=36  Identities=22%  Similarity=0.213  Sum_probs=27.6

Q ss_pred             HHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          119 LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       119 ~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                      +++++|+.++|++++-..     .+.|..+.+++.+.|...
T Consensus       207 ~a~~~gv~gTPt~~v~~~-----~~~g~~~~~~l~~~i~~~  242 (244)
T COG1651         207 LAQQLGVNGTPTFIVNGK-----LVPGLPDLDELKAIIDEA  242 (244)
T ss_pred             HHHhcCCCcCCeEEECCe-----eecCCCCHHHHHHHHHHh
Confidence            456789999999866432     778888888888888654

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=91.64  E-value=1.5  Score=36.44  Aligned_cols=90  Identities=7%  Similarity=0.008  Sum_probs=60.9

Q ss_pred             EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC-ccc-------ccchhhhccCCCCCCcEEEEEccCCcc
Q 015368          286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS-EGV-------GRRVSQEFGVSGNAPRVIAYSARDAKK  356 (408)
Q Consensus       286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~-~~~-------~~~l~~~~~i~~~~~p~i~i~~~~~~~  356 (408)
                      ++.|+..||. |.+....+++++++++-.   +.-+-+|... ..|       ...+...||......|..++++.+++.
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~---Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i  149 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFS---VFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLE  149 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcCCE---EEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcE
Confidence            5667888887 999999999999998643   3333344221 011       112345667422357888888887765


Q ss_pred             -c-cCCCCCChHHHHHHHHHHhcC
Q 015368          357 -Y-VLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       357 -y-~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                       + ..-|..+.+++.+-++.+++-
T Consensus       150 ~~~~~~G~~~~~~L~~~I~~ll~~  173 (181)
T PRK13728        150 ALPLLQGATDAAGFMARMDTVLQM  173 (181)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHhh
Confidence             4 478999999998888887753

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=91.35  E-value=2  Score=42.14  Aligned_cols=109  Identities=14%  Similarity=0.067  Sum_probs=69.7

Q ss_pred             CCceEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC---c------------
Q 015368          265 HPLVVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS---E------------  327 (408)
Q Consensus       265 ~p~v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~---~------------  327 (408)
                      .|.+...+.+.-...++.++|+++ ++..|+. |....+.+.+++++++.+  ++.++.+....   .            
T Consensus        38 lP~f~l~D~dG~~v~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~~~~  115 (521)
T PRK14018         38 LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAG  115 (521)
T ss_pred             CCCeEeecCCCceeeccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHHHHh
Confidence            454544444433334445565544 6677887 999999999999998732  16666554210   0            


Q ss_pred             ----------ccccchhhhccCCCCCCcEEEEEccCC-ccccCCCCCChHHHHHHHHHHhc
Q 015368          328 ----------GVGRRVSQEFGVSGNAPRVIAYSARDA-KKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       328 ----------~~~~~l~~~~~i~~~~~p~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                                +-...+.+.|++.  ..|..++++.+| ..+.+.|.++.++|.++|+....
T Consensus       116 ~~y~~~pV~~D~~~~lak~fgV~--giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~~  174 (521)
T PRK14018        116 LDYPKLPVLTDNGGTLAQSLNIS--VYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPNA  174 (521)
T ss_pred             CCCcccceeccccHHHHHHcCCC--CcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhhh
Confidence                      0022455677774  368887777644 45667899999999999996553

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=91.26  E-value=0.93  Score=34.77  Aligned_cols=69  Identities=13%  Similarity=0.158  Sum_probs=45.0

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCc
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAK  355 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~  355 (408)
                      .+.|+++ ++.+||. |+.....+.+.+......   ..|+.++.+...  ......+++.....|.+++++.+|+
T Consensus        18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk   88 (117)
T cd02959          18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDE--EPKDEEFSPDGGYIPRILFLDPSGD   88 (117)
T ss_pred             cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCC--CchhhhcccCCCccceEEEECCCCC
Confidence            4446655 4567776 888888888877765444   456666665432  2334677776555899999986444

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.19  E-value=3.8  Score=36.69  Aligned_cols=122  Identities=11%  Similarity=0.144  Sum_probs=78.6

Q ss_pred             HHHHHHHhcCCCCceEeeccccccccccCCc---cEEEEEeeC-----CC-chHHHHHHHHHHHHhcCCc-----ceEEE
Q 015368          254 LAIANFVTHTKHPLVVTLTIHNAQFVFQDPR---KQLWLFAPA-----YG-SDKVILTFEEVAKALKGKV-----NMLLH  319 (408)
Q Consensus       254 ~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~---~~~i~f~~~-----~~-~~~~~~~~~~vA~~~~~~~-----~~i~f  319 (408)
                      +.+.+-++--+..-+..++.+++..+...+.   -.+++|+..     +. |.+..++++-+|.-++...     ..+-|
T Consensus        28 ~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF  107 (331)
T KOG2603|consen   28 NKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFF  107 (331)
T ss_pred             HHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEE
Confidence            4455555433444577788888887776543   334455543     22 6677789999999876210     12889


Q ss_pred             EEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCcccc---CC---CCCChHHHHHHHHHHhcCcc
Q 015368          320 VYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYV---LN---GELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       320 ~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~y~---~~---~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      +.+|.++   .+...+.+++.+  .|.++++.+ ++.+-.   |+   -....|++.+|+++.-+=.+
T Consensus       108 ~~Vd~~e---~p~~Fq~l~ln~--~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v  170 (331)
T KOG2603|consen  108 CMVDYDE---SPQVFQQLNLNN--VPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV  170 (331)
T ss_pred             EEEeccc---cHHHHHHhcccC--CCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence            9999876   457779999954  689998866 222111   22   13458899999998765443

>smart00594 UAS UAS domain

Probab=90.70  E-value=1.4  Score=34.10  Aligned_cols=62  Identities=19%  Similarity=0.332  Sum_probs=46.2

Q ss_pred             HHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCC--c----cccCCCCCChHHHHHHH
Q 015368          305 EVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDA--K----KYVLNGELTLSSIKSFG  372 (408)
Q Consensus       305 ~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~--~----~y~~~~~~~~~~i~~Fi  372 (408)
                      ++.+-..++   +.+..+|....+ +..++..+++.  ..|.+++++.++  .    .....|..+++++..++
T Consensus        54 ~V~~~i~~~---fv~~~~dv~~~e-g~~l~~~~~~~--~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       54 AVKSLIREN---FIFWQVDVDTSE-GQRVSQFYKLD--SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             HHHHHHHcC---EEEEEecCCChh-HHHHHHhcCcC--CCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            456666667   888888988776 67888999995  478988888743  2    22467889999888776

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=90.70  E-value=1.9  Score=38.02  Aligned_cols=87  Identities=15%  Similarity=0.102  Sum_probs=59.8

Q ss_pred             EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc------cccchhhhccCCCCCCcEEEEEccC-Cccc
Q 015368          286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG------VGRRVSQEFGVSGNAPRVIAYSARD-AKKY  357 (408)
Q Consensus       286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~------~~~~l~~~~~i~~~~~p~i~i~~~~-~~~y  357 (408)
                      ++++|.+.|. |.+...+++.+|.+|+=.   +..+-+|+....      ......+.+|+.  ..|++++.+.+ ++.+
T Consensus       154 L~fFy~~~C~~C~~~apil~~fa~~ygi~---v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~--~~Pal~Lv~~~t~~~~  228 (256)
T TIGR02739       154 LFFFYRGKSPISQKMAPVIQAFAKEYGIS---VIPISVDGTLIPGLPNSRSDSGQAQHLGVK--YFPALYLVNPKSQKMS  228 (256)
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHHhCCe---EEEEecCCCCCCCCCCccCChHHHHhcCCc--cCceEEEEECCCCcEE
Confidence            3445555555 899999999999999977   777777765321      112355677784  47899998884 5555


Q ss_pred             cC-CCCCChHHHHHHHHHHhc
Q 015368          358 VL-NGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       358 ~~-~~~~~~~~i~~Fi~~~~~  377 (408)
                      +. -|.++.++|.+=|..+..
T Consensus       229 pv~~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       229 PLAYGFISQDELKERILNVLT  249 (256)
T ss_pred             EEeeccCCHHHHHHHHHHHHh
Confidence            54 578999888655555444

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.65  E-value=0.84  Score=31.13  Aligned_cols=57  Identities=18%  Similarity=0.156  Sum_probs=38.1

Q ss_pred             EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc--------------H--hHHHHcCCCcCcEEEEEeCCeEeE
Q 015368           78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE--------------K--DLAKEYNILAYPTLYLFVAGVRQF  141 (408)
Q Consensus        78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~--------------~--~~~~~~~i~~~Pt~~~~~~g~~~~  141 (408)
                      ++|+|..||.|..+..+++++.      +.+-.|++.+.              +  +-++..|--|+|.+. .++|+++.
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl~------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall-~~d~~vVl   77 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERLN------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALL-TDDGKVVL   77 (85)
T ss_pred             eeeccccCcchHHHHHHHHHcC------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEE-eCCCcEEE
Confidence            6899999999998877777654      44445555432              1  224667778899984 45665543

>PF13728 TraF: F plasmid transfer operon protein

Probab=90.27  E-value=1.5  Score=37.74  Aligned_cols=80  Identities=10%  Similarity=0.191  Sum_probs=55.2

Q ss_pred             EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc------ccccchhhhccCCCCCCcEEEEEccCC-ccc
Q 015368          286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE------GVGRRVSQEFGVSGNAPRVIAYSARDA-KKY  357 (408)
Q Consensus       286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~------~~~~~l~~~~~i~~~~~p~i~i~~~~~-~~y  357 (408)
                      ++++|.+.|. |+....+++.++.++.=.   +..+-+|+...      .....+.+.||+.  ..|++++.+.++ ..+
T Consensus       124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~---v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~--~~Pal~Lv~~~~~~~~  198 (215)
T PF13728_consen  124 LFFFYRSDCPYCQQQAPILQQFADKYGFS---VIPVSLDGRPIPSFPNPRPDPGQAKRLGVK--VTPALFLVNPNTKKWY  198 (215)
T ss_pred             EEEEEcCCCchhHHHHHHHHHHHHHhCCE---EEEEecCCCCCcCCCCCCCCHHHHHHcCCC--cCCEEEEEECCCCeEE
Confidence            3445556666 999999999999999755   66666664311      1134567788994  578999888844 555


Q ss_pred             cC-CCCCChHHHHH
Q 015368          358 VL-NGELTLSSIKS  370 (408)
Q Consensus       358 ~~-~~~~~~~~i~~  370 (408)
                      +. -|.++.++|.+
T Consensus       199 pv~~G~~s~~~L~~  212 (215)
T PF13728_consen  199 PVSQGFMSLDELED  212 (215)
T ss_pred             EEeeecCCHHHHHH
Confidence            54 57888887753

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=90.26  E-value=0.62  Score=34.70  Aligned_cols=75  Identities=17%  Similarity=0.212  Sum_probs=40.2

Q ss_pred             ccccChhHHHHHhcc--CCeEEEEEecCCCCcCHHH---HHHHhc-cCCceeEEEe-------cCHhHHhhcCCCCCCCC
Q 015368          165 YSITTTDEAERILTV--ESKLVLGFLHDLEGMESEE---LAAASK-LHSDVNFYQT-------TSADVAEFFHIHPKSKR  231 (408)
Q Consensus       165 ~~i~~~~~~~~~~~~--~~~~vi~f~~~~~~~~~~~---~~~~a~-~~~~~~f~~~-------~~~~l~~~~~i~~~~~~  231 (408)
                      ..|.+.++++.+++.  .++++|.=.+..|.-....   |..... ....+.++..       .+..+++.||+.-  -.
T Consensus         2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H--eS   79 (105)
T PF11009_consen    2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH--ES   79 (105)
T ss_dssp             -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------S
T ss_pred             CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc--CC
Confidence            357899999999976  4555553334557654433   434332 2323666543       4567899999985  46


Q ss_pred             CeEEEeecCC
Q 015368          232 PALIFLHLEA  241 (408)
Q Consensus       232 p~l~~~~~~~  241 (408)
                      |.+++++++.
T Consensus        80 PQ~ili~~g~   89 (105)
T PF11009_consen   80 PQVILIKNGK   89 (105)
T ss_dssp             SEEEEEETTE
T ss_pred             CcEEEEECCE
Confidence            9999999763

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=90.21  E-value=0.83  Score=37.83  Aligned_cols=44  Identities=2%  Similarity=-0.107  Sum_probs=31.7

Q ss_pred             HhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          217 ADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       217 ~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      ..+.+.|++.   +.|+.+++.+++.-...+.|..+.+++.+++...
T Consensus       127 ~~~~~~~~v~---~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~  170 (173)
T TIGR00385       127 GKLGLDLGVY---GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA  170 (173)
T ss_pred             CchHHhcCCe---eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence            3456667766   5798787876655566677888889999888753

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=90.13  E-value=0.66  Score=36.01  Aligned_cols=73  Identities=12%  Similarity=0.031  Sum_probs=42.2

Q ss_pred             CCeEEEEEecCCCCcCHHHHHHHhccC--CceeEEE--------------------------ecCHhHHhhcCCCCCCCC
Q 015368          180 ESKLVLGFLHDLEGMESEELAAASKLH--SDVNFYQ--------------------------TTSADVAEFFHIHPKSKR  231 (408)
Q Consensus       180 ~~~~vi~f~~~~~~~~~~~~~~~a~~~--~~~~f~~--------------------------~~~~~l~~~~~i~~~~~~  231 (408)
                      +++++|.|+.+||..+......+.++.  ..+.+..                          .....+++.|++.   +.
T Consensus        25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~---~~  101 (127)
T cd03010          25 GKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY---GV  101 (127)
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC---CC
Confidence            567888899999987555444333211  1122221                          1234566667776   47


Q ss_pred             CeEEEeecCCCcccccCCcCCHHH
Q 015368          232 PALIFLHLEAGKATPFRHQFTRLA  255 (408)
Q Consensus       232 p~l~~~~~~~~~~~~y~g~~~~~~  255 (408)
                      |+.+++.+++.....+.|..+.+.
T Consensus       102 P~~~~ld~~G~v~~~~~G~~~~~~  125 (127)
T cd03010         102 PETFLIDGDGIIRYKHVGPLTPEV  125 (127)
T ss_pred             CeEEEECCCceEEEEEeccCChHh
Confidence            877767655544556677766543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=89.98  E-value=1.6  Score=31.17  Aligned_cols=75  Identities=21%  Similarity=0.220  Sum_probs=60.3

Q ss_pred             CcEEEEEecCCChhHHhhhHHHHHHHHHh-cCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368           74 RNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR  149 (408)
Q Consensus        74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~  149 (408)
                      ..++=.|.|..-+.+++....+.++-+.+ .+.+.+-.||+.+++++++.++|-.+||++=...+ ...+..|.++.
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~-P~rriiGdls~   78 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILPP-PVRKIIGDLSD   78 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCC-Ccceeeccccc
Confidence            35666778888889999988888886654 55788889999999999999999999997655555 66788888754

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>PRK09301 circadian clock protein KaiB; Provisional

Probab=89.30  E-value=1.7  Score=32.01  Aligned_cols=76  Identities=21%  Similarity=0.225  Sum_probs=61.9

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHh-cCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR  149 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~  149 (408)
                      +..++=+|.|..-+..++....+.++-+.+ .+.+.+-.||+.++++++..++|-.+||++=...+ ...+..|.++.
T Consensus         5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~-P~rriiGDlsd   81 (103)
T PRK09301          5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILPP-PVRKIIGDLSD   81 (103)
T ss_pred             ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCC-Ccceeeccccc
Confidence            356777888988899999988888886654 55788888999999999999999999996655555 67788898754

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=89.14  E-value=2.3  Score=29.17  Aligned_cols=61  Identities=25%  Similarity=0.315  Sum_probs=49.0

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHh-cCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~-~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~  136 (408)
                      .+.+|-+..-+..++....+.++-+++ ++.+.+-.||+.++++++..++|-.+||++=...
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~P   64 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKVLP   64 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhcCC
Confidence            455566666688888888888887766 4489999999999999999999999999764443

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=88.81  E-value=2  Score=31.10  Aligned_cols=56  Identities=11%  Similarity=0.014  Sum_probs=42.3

Q ss_pred             cEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEE
Q 015368          285 KQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAY  349 (408)
Q Consensus       285 ~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i  349 (408)
                      .+.+|..+++. |......+++++..+. +   +.|..+|.+..   +.+...+|+..  .|.+++
T Consensus        15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~-~---i~~~~vd~~~~---~e~a~~~~V~~--vPt~vi   71 (89)
T cd03026          15 NFETYVSLSCHNCPDVVQALNLMAVLNP-N---IEHEMIDGALF---QDEVEERGIMS--VPAIFL   71 (89)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHHCC-C---ceEEEEEhHhC---HHHHHHcCCcc--CCEEEE
Confidence            33444556665 8999999999998875 4   99999997753   46779999953  688876

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=88.72  E-value=9.9  Score=29.71  Aligned_cols=76  Identities=16%  Similarity=0.168  Sum_probs=53.5

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcC--cEEEEEeCCeEeEEeeCCCCHHHHH
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAY--PTLYLFVAGVRQFQFFGERTRDVIS  153 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~--Pt~~~~~~g~~~~~~~g~~~~~~l~  153 (408)
                      -++.++.|.|+=|......++      ..++.+-.+..++-..+-+++||..-  -.--.+-+|   ....|...++++.
T Consensus        27 ~~~vyksPnCGCC~~w~~~mk------~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~G---y~vEGHVPa~aI~   97 (149)
T COG3019          27 EMVVYKSPNCGCCDEWAQHMK------ANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVING---YYVEGHVPAEAIA   97 (149)
T ss_pred             eEEEEeCCCCccHHHHHHHHH------hCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcC---EEEeccCCHHHHH
Confidence            467789999999998765554      12678888888888888888887521  111222356   3457889999999


Q ss_pred             HHHHhHh
Q 015368          154 AWVREKM  160 (408)
Q Consensus       154 ~~i~~~~  160 (408)
                      .++.+.-
T Consensus        98 ~ll~~~p  104 (149)
T COG3019          98 RLLAEKP  104 (149)
T ss_pred             HHHhCCC
Confidence            8887654

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=88.59  E-value=1.9  Score=34.55  Aligned_cols=53  Identities=9%  Similarity=0.209  Sum_probs=36.1

Q ss_pred             EEEEecC------CChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCC----CcCcEEEEEeCC
Q 015368           77 MVMFYAN------WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNI----LAYPTLYLFVAG  137 (408)
Q Consensus        77 ~v~f~a~------wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i----~~~Pt~~~~~~g  137 (408)
                      +|.|.++      +|++|+.....|+..      +|.+-.+|++.+++    +.+..+-    ..+|.+++  +|
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G   68 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DG   68 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CC
Confidence            3455666      899999988777653      57888889877654    3344454    57888754  56

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=88.57  E-value=1.7  Score=37.94  Aligned_cols=59  Identities=12%  Similarity=0.051  Sum_probs=39.5

Q ss_pred             HHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcC-CCcCcEEEEEe
Q 015368           69 FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN-ILAYPTLYLFV  135 (408)
Q Consensus        69 ~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~-i~~~Pt~~~~~  135 (408)
                      ....||+.+++.-+.|||.|...+=.+--+-.+++. +.+.....+.       .+ -..+|++.+..
T Consensus        54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn-~~l~~~~S~~-------~d~~pn~Ptl~F~~  113 (249)
T PF06053_consen   54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN-FSLEYHYSDP-------YDNYPNTPTLIFNN  113 (249)
T ss_pred             cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC-eeeEEeecCc-------ccCCCCCCeEEEec
Confidence            336789999999999999999887666666666663 3322222111       11 24589998876

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=88.20  E-value=7.8  Score=32.32  Aligned_cols=87  Identities=16%  Similarity=0.243  Sum_probs=59.7

Q ss_pred             CCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHHH
Q 015368           73 NRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAKE  122 (408)
Q Consensus        73 ~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~~  122 (408)
                      +|.+++.||- +.-+-|-.+...|.+.+.++++ ++.++.+.+|.                            +.++|+.
T Consensus        33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~  112 (194)
T COG0450          33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARA  112 (194)
T ss_pred             CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHH
Confidence            3666666663 4556788899999999999987 88888888764                            3568888


Q ss_pred             cCCCc------CcEEEEEe-CCeEeEE--eeC--CCCHHHHHHHHHhH
Q 015368          123 YNILA------YPTLYLFV-AGVRQFQ--FFG--ERTRDVISAWVREK  159 (408)
Q Consensus       123 ~~i~~------~Pt~~~~~-~g~~~~~--~~g--~~~~~~l~~~i~~~  159 (408)
                      ||+-.      .=.+++++ +|.+...  |..  .++.+++.+-++..
T Consensus       113 ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl  160 (194)
T COG0450         113 YGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL  160 (194)
T ss_pred             cCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence            88763      22567777 7854322  222  47788877766533

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=87.71  E-value=4.4  Score=35.59  Aligned_cols=88  Identities=10%  Similarity=0.068  Sum_probs=60.6

Q ss_pred             EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc-cc-----ccchhhhccCCCCCCcEEEEEccC-Cccc
Q 015368          286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE-GV-----GRRVSQEFGVSGNAPRVIAYSARD-AKKY  357 (408)
Q Consensus       286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~-~~-----~~~l~~~~~i~~~~~p~i~i~~~~-~~~y  357 (408)
                      ++++|.+.|. |.++..+++.+|.+|+=.   +.-+-+|+... .|     .......+|+.  ..|++++.+.+ ++.+
T Consensus       147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~---v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~--~~PAl~Lv~~~t~~~~  221 (248)
T PRK13703        147 LMFFYRGQDPIDGQLAQVINDFRDTYGLS---VIPVSVDGVINPLLPDSRTDQGQAQRLGVK--YFPALMLVDPKSGSVR  221 (248)
T ss_pred             EEEEECCCCchhHHHHHHHHHHHHHhCCe---EEEEecCCCCCCCCCCCccChhHHHhcCCc--ccceEEEEECCCCcEE
Confidence            3445555555 999999999999999977   77778876432 11     11233567773  46899999884 4555


Q ss_pred             cC-CCCCChHHHHHHHHHHhcC
Q 015368          358 VL-NGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       358 ~~-~~~~~~~~i~~Fi~~~~~g  378 (408)
                      +. -|.++.++|.+=+..+..|
T Consensus       222 pv~~G~iS~deL~~Ri~~v~t~  243 (248)
T PRK13703        222 PLSYGFITQDDLAKRFLNVSTD  243 (248)
T ss_pred             EEeeccCCHHHHHHHHHHHHhc
Confidence            54 5789999987666666555

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=87.39  E-value=2.4  Score=35.51  Aligned_cols=41  Identities=2%  Similarity=-0.079  Sum_probs=29.2

Q ss_pred             HHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          219 VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       219 l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      +...|++.   +.|+.+++...+.-...+.|..+.+++.++|..
T Consensus       134 ~~~~~gv~---~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~  174 (185)
T PRK15412        134 LGLDLGVY---GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKP  174 (185)
T ss_pred             HHHhcCCC---cCCeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence            44466666   589888887665556677788888888877753

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=87.02  E-value=11  Score=28.10  Aligned_cols=87  Identities=13%  Similarity=0.106  Sum_probs=67.2

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHH----HHcCCC-cCcEEEEEe---CCeEeEE
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLA----KEYNIL-AYPTLYLFV---AGVRQFQ  142 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~----~~~~i~-~~Pt~~~~~---~g~~~~~  142 (408)
                      +...+|-|--+--+.-.++.+.++++|+.+..  +..++-||-++-+-+.    +.|+|. .-|.+=+++   +..+...
T Consensus        20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~~   99 (120)
T cd03074          20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWME   99 (120)
T ss_pred             CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeEe
Confidence            35678888888889999999999999999877  8999999999987664    345654 249988887   2224455


Q ss_pred             eeCC---CCHHHHHHHHHhH
Q 015368          143 FFGE---RTRDVISAWVREK  159 (408)
Q Consensus       143 ~~g~---~~~~~l~~~i~~~  159 (408)
                      -.+.   .+++.+..||...
T Consensus       100 m~~~~d~~t~~~Le~WiedV  119 (120)
T cd03074         100 MDDDEDLPTAEELEDWIEDV  119 (120)
T ss_pred             cccccccCcHHHHHHHHHhh
Confidence            5444   6789999999764

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=86.71  E-value=4.5  Score=29.97  Aligned_cols=67  Identities=18%  Similarity=0.212  Sum_probs=44.4

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhc-CCcceEEEEEEEcCCc--c------------------cccchhhhccC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALK-GKVNMLLHVYVEMNSE--G------------------VGRRVSQEFGV  339 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~-~~~~~i~f~~vd~~~~--~------------------~~~~l~~~~~i  339 (408)
                      +.+.++ ++..++. |......+.++..++. ..   +.++.++.+..  +                  -...+.+.||+
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~---~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG---VEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV   95 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC---eEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc
Confidence            334444 4555666 8888889999999986 34   88888887752  0                  01356677777


Q ss_pred             CCCCCcEEEEEccCC
Q 015368          340 SGNAPRVIAYSARDA  354 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~  354 (408)
                      .  ..|.+++++.++
T Consensus        96 ~--~~P~~~l~d~~g  108 (116)
T cd02966          96 R--GLPTTFLIDRDG  108 (116)
T ss_pred             C--ccceEEEECCCC
Confidence            4  357777777644

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=86.62  E-value=4.5  Score=31.05  Aligned_cols=86  Identities=7%  Similarity=0.122  Sum_probs=55.0

Q ss_pred             cEEEEEeeCCC---chHHHHHHHHHHHHhcCCcceEEEEEEEcCCccccc-----------chhhhccCCCCCCcEEEEE
Q 015368          285 KQLWLFAPAYG---SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGR-----------RVSQEFGVSGNAPRVIAYS  350 (408)
Q Consensus       285 ~~~i~f~~~~~---~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~-----------~l~~~~~i~~~~~p~i~i~  350 (408)
                      -.+++|++..+   .......|++-...+..+  ++.+..+-....  ..           .+.+.|++++... .+++.
T Consensus        11 R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~--~~~~~~~~~~~~~~lr~~l~~~~~~f-~~vLi   85 (118)
T PF13778_consen   11 RLLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGA--RSPGKPLSPEDIQALRKRLRIPPGGF-TVVLI   85 (118)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCcc--ccccCcCCHHHHHHHHHHhCCCCCce-EEEEE
Confidence            34567776654   344455555533344432  266655543332  33           7788999987655 45555


Q ss_pred             cc-CCccccCCCCCChHHHHHHHHHH
Q 015368          351 AR-DAKKYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       351 ~~-~~~~y~~~~~~~~~~i~~Fi~~~  375 (408)
                      .. ++.|-....+++.++|.+.|+.+
T Consensus        86 GKDG~vK~r~~~p~~~~~lf~~ID~M  111 (118)
T PF13778_consen   86 GKDGGVKLRWPEPIDPEELFDTIDAM  111 (118)
T ss_pred             eCCCcEEEecCCCCCHHHHHHHHhCC
Confidence            55 78888888999999999999864

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=85.40  E-value=4.8  Score=31.28  Aligned_cols=72  Identities=11%  Similarity=0.097  Sum_probs=45.3

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc--c-------------------ccchhhhccC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG--V-------------------GRRVSQEFGV  339 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~--~-------------------~~~l~~~~~i  339 (408)
                      +.++++ ++..++. |......+.++++++..+.+++.++.++.+...  +                   ...+.+.||+
T Consensus        18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   97 (131)
T cd03009          18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI   97 (131)
T ss_pred             CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence            344444 4456666 888888899998888642122667766655331  0                   1245567787


Q ss_pred             CCCCCcEEEEEccCCcc
Q 015368          340 SGNAPRVIAYSARDAKK  356 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~~~  356 (408)
                      .  ..|.+++++.+|+.
T Consensus        98 ~--~~P~~~lid~~G~i  112 (131)
T cd03009          98 E--GIPTLIILDADGEV  112 (131)
T ss_pred             C--CCCEEEEECCCCCE
Confidence            4  36899999875553

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>TIGR00762 DegV EDD domain protein, DegV family

Probab=85.39  E-value=3.4  Score=37.17  Aligned_cols=157  Identities=13%  Similarity=0.071  Sum_probs=87.4

Q ss_pred             CcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHh----ccCCeEEEEEe
Q 015368          113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL----TVESKLVLGFL  188 (408)
Q Consensus       113 ~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~~~vi~f~  188 (408)
                      |+-.++.+++++|.-+|-.+.++ |+.... .-..+.+++.+.+.+.-..+-+.-.+..++.+..    +..+.+++.-.
T Consensus         9 ~dl~~~~~~~~~I~vvPl~I~~~-~~~y~D-~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~i   86 (275)
T TIGR00762         9 ADLPPELIEEYGITVVPLTVIID-GKTYRD-GVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSIHL   86 (275)
T ss_pred             cCCCHHHHHHcCCEEEEEEEEEC-CEEeec-CCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEc
Confidence            44457889999999999998886 433322 1247899999999764433344444666655544    34444444333


Q ss_pred             cCCCCcCHHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCce
Q 015368          189 HDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLV  268 (408)
Q Consensus       189 ~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v  268 (408)
                      ++.-+..+.....+++...+..+..+.+..+.-..+.-         +...    ........+.+++.+|++..+.-..
T Consensus        87 Ss~lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~---------v~~a----~~~~~~G~s~~eI~~~l~~~~~~~~  153 (275)
T TIGR00762        87 SSGLSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLL---------VLEA----AKLAEEGKSLEEILAKLEELRERTK  153 (275)
T ss_pred             CCchhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHH---------HHHH----HHHHHcCCCHHHHHHHHHHHHhhcE
Confidence            44344566666666644433445554443332222210         0000    0011112467888888887666666


Q ss_pred             EeeccccccccccCCc
Q 015368          269 VTLTIHNAQFVFQDPR  284 (408)
Q Consensus       269 ~~lt~~~~~~~~~~~~  284 (408)
                      ..+..+++..+...++
T Consensus       154 ~~f~v~~L~~L~~gGR  169 (275)
T TIGR00762       154 LYFVVDTLEYLVKGGR  169 (275)
T ss_pred             EEEEECcHHHHHhcCC
Confidence            6666666666655544

This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=85.25  E-value=9.9  Score=26.14  Aligned_cols=72  Identities=19%  Similarity=0.146  Sum_probs=49.1

Q ss_pred             EEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368           79 MFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus        79 ~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i  156 (408)
                      +++.++|+.|++..=.++.     ++ .+.+..++..+ ...+.+...-..+|++.  .+|..+.      +...|.+++
T Consensus         1 Ly~~~~Sp~~~kv~~~l~~-----~~i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~------dS~~I~~yL   67 (75)
T PF13417_consen    1 LYGFPGSPYSQKVRLALEE-----KGIPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT------DSAAIIEYL   67 (75)
T ss_dssp             EEEETTSHHHHHHHHHHHH-----HTEEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE------SHHHHHHHH
T ss_pred             CCCcCCChHHHHHHHHHHH-----cCCeEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe------CHHHHHHHH
Confidence            4678999999997644433     32 45566666555 35666777777899997  5674322      678899999


Q ss_pred             HhHhCCC
Q 015368          157 REKMTLG  163 (408)
Q Consensus       157 ~~~~~~~  163 (408)
                      .+..+.+
T Consensus        68 ~~~~~~~   74 (75)
T PF13417_consen   68 EERYPGP   74 (75)
T ss_dssp             HHHSTSS
T ss_pred             HHHcCCC
Confidence            8877543

...

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=84.91  E-value=13  Score=27.18  Aligned_cols=74  Identities=15%  Similarity=0.072  Sum_probs=50.6

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE-eEEeeCCCCHH
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR-QFQFFGERTRD  150 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~~g~~~~~  150 (408)
                      ++.+.++.|..+. ..|.++...++++++.-. ++.+-..+..+           ..|++.+.++|+. -.+|.|-..-.
T Consensus        18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd-kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~Gh   84 (94)
T cd02974          18 ENPVELVASLDDS-EKSAELLELLEEIASLSD-KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPMGH   84 (94)
T ss_pred             CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC-ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCCch
Confidence            3455666676655 889888888888877643 56654433221           3699999887632 37899988888


Q ss_pred             HHHHHHHh
Q 015368          151 VISAWVRE  158 (408)
Q Consensus       151 ~l~~~i~~  158 (408)
                      ++..+|..
T Consensus        85 Ef~Slila   92 (94)
T cd02974          85 EFTSLVLA   92 (94)
T ss_pred             hHHHHHHH
Confidence            88887753

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>PHA03075 glutaredoxin-like protein; Provisional

Probab=84.31  E-value=1.8  Score=32.44  Aligned_cols=36  Identities=11%  Similarity=0.337  Sum_probs=28.3

Q ss_pred             CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC
Q 015368           74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA  113 (408)
Q Consensus        74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~  113 (408)
                      |.+++.|-.|.|+.|......+.++..+|    .+.+||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY----~ilrVNI   37 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY----DILRVNI   37 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc----cEEEEEe
Confidence            56899999999999999888886666554    4666664

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=84.23  E-value=8.3  Score=31.19  Aligned_cols=59  Identities=14%  Similarity=0.145  Sum_probs=46.5

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY  114 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~  114 (408)
                      -.+.+++++.++--.-+++++||-=-|+.|+.-..-...+..+.++|++ ++.+...-|.
T Consensus        17 f~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCN   76 (171)
T KOG1651|consen   17 FSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCN   76 (171)
T ss_pred             eEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccc
Confidence            3555666666665555788888888899999888777899999999977 8888888874

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=84.11  E-value=11  Score=25.88  Aligned_cols=72  Identities=14%  Similarity=0.143  Sum_probs=42.0

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--ccHhHHHHcCCCcCcEEEEEe--CCeEeEEeeCCCCHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFV--AGVRQFQFFGERTRDVI  152 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~--~g~~~~~~~g~~~~~~l  152 (408)
                      +..|+.+.|+.|++.+-.+...      ++.+-.++.+  ...++ +.-+-..+|++..-+  +|..      -.....|
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~------l~eS~~I   68 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYH------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ------LVDSSVI   68 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC------CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE------EEcHHHH
Confidence            3467889999999987554443      2333333333  22333 334556789886542  2321      2356778


Q ss_pred             HHHHHhHhC
Q 015368          153 SAWVREKMT  161 (408)
Q Consensus       153 ~~~i~~~~~  161 (408)
                      .+++.+.++
T Consensus        69 ~~yL~~~~~   77 (77)
T cd03040          69 ISTLKTYLG   77 (77)
T ss_pred             HHHHHHHcC
Confidence            888887653

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=83.87  E-value=2.8  Score=35.37  Aligned_cols=76  Identities=20%  Similarity=0.177  Sum_probs=50.4

Q ss_pred             cccChhHHHHHhc--cCCeEEEEEecCCCC---cCHHHHHHHh-c-cCCceeEEEe---cCHhHHhhcCCCCC---CCCC
Q 015368          166 SITTTDEAERILT--VESKLVLGFLHDLEG---MESEELAAAS-K-LHSDVNFYQT---TSADVAEFFHIHPK---SKRP  232 (408)
Q Consensus       166 ~i~~~~~~~~~~~--~~~~~vi~f~~~~~~---~~~~~~~~~a-~-~~~~~~f~~~---~~~~l~~~~~i~~~---~~~p  232 (408)
                      .+++.+.++.-++  ....|+|-||..|+.   ...+.|.+++ + ....+.||.+   .-++++++|+|+..   .-.|
T Consensus       128 yf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLP  207 (265)
T KOG0914|consen  128 YFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLP  207 (265)
T ss_pred             eecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCC
Confidence            3333344444443  456899999987755   4667787777 4 3466778765   45678889988643   2469


Q ss_pred             eEEEeecCC
Q 015368          233 ALIFLHLEA  241 (408)
Q Consensus       233 ~l~~~~~~~  241 (408)
                      ++++|..+.
T Consensus       208 T~ilFq~gk  216 (265)
T KOG0914|consen  208 TYILFQKGK  216 (265)
T ss_pred             eEEEEccch
Confidence            999998764

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=82.65  E-value=6.5  Score=32.64  Aligned_cols=78  Identities=12%  Similarity=0.120  Sum_probs=61.4

Q ss_pred             CCCcccccChhHHHHHhccCCeEEEEEecCC---CCcCHHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368          161 TLGTYSITTTDEAERILTVESKLVLGFLHDL---EGMESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~---~~~~~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l  234 (408)
                      .....++.++.++-+....+..+|+-||.+.   |.-.-+.+..+|+..-..+|..+   +.+=++.+++|.   ..|++
T Consensus        65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~Ik---VLP~v  141 (211)
T KOG1672|consen   65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIK---VLPTV  141 (211)
T ss_pred             CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeee---EeeeE
Confidence            4667889899999989988888888899875   34455667778877777888876   445588999999   48999


Q ss_pred             EEeecCC
Q 015368          235 IFLHLEA  241 (408)
Q Consensus       235 ~~~~~~~  241 (408)
                      ++|.++.
T Consensus       142 ~l~k~g~  148 (211)
T KOG1672|consen  142 ALFKNGK  148 (211)
T ss_pred             EEEEcCE
Confidence            9998763

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=82.14  E-value=1.7  Score=32.48  Aligned_cols=76  Identities=16%  Similarity=0.137  Sum_probs=42.0

Q ss_pred             EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc----HhHHHHcCCCcCcEEEEEe-CCeEeEEe----eCCCC
Q 015368           78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTLYLFV-AGVRQFQF----FGERT  148 (408)
Q Consensus        78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt~~~~~-~g~~~~~~----~g~~~  148 (408)
                      ..|+.++|+.|++....+++.      ++.+-.+|..++    .++.+-.+-.+.+.--+++ +|......    ...++
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ls   75 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDELS   75 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHHc------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCCC
Confidence            468899999999987666652      566667776543    2333333333333333444 33211110    23456


Q ss_pred             HHHHHHHHHhH
Q 015368          149 RDVISAWVREK  159 (408)
Q Consensus       149 ~~~l~~~i~~~  159 (408)
                      .+++.++|.++
T Consensus        76 ~~e~~~~l~~~   86 (105)
T cd02977          76 DEEALELMAEH   86 (105)
T ss_pred             HHHHHHHHHhC
Confidence            66666666554

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=82.05  E-value=10  Score=31.80  Aligned_cols=92  Identities=20%  Similarity=0.173  Sum_probs=53.6

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc----------------cccchhhhccCCCCC
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG----------------VGRRVSQEFGVSGNA  343 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~----------------~~~~l~~~~~i~~~~  343 (408)
                      .+++.++ ++.++|. |++..+.+.++.++...+   +.++..| +..+                ....+.+.||+.  .
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~---vv~Is~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~--~  146 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETD---VVMISDG-TPAEHRRFLKDHELGGERYVVSAEIGMAFQVG--K  146 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCc---EEEEeCC-CHHHHHHHHHhcCCCcceeechhHHHHhccCC--c
Confidence            3445554 4555665 888888888887765444   5444321 1111                012334555553  3


Q ss_pred             CcEEEEEccCCccccCCC-CCChHHHHHHHHHHhcCcc
Q 015368          344 PRVIAYSARDAKKYVLNG-ELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~-~~~~~~i~~Fi~~~~~gk~  380 (408)
                      .|..++.+.+|+.-. .+ ..+.+.+++.++....|..
T Consensus       147 ~P~~~lID~~G~I~~-~g~~~~~~~le~ll~~l~~~~~  183 (189)
T TIGR02661       147 IPYGVLLDQDGKIRA-KGLTNTREHLESLLEADREGFA  183 (189)
T ss_pred             cceEEEECCCCeEEE-ccCCCCHHHHHHHHHHHHcCcc
Confidence            588888887554322 34 3456789999998888854

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=81.99  E-value=9.5  Score=25.84  Aligned_cols=55  Identities=15%  Similarity=0.168  Sum_probs=34.8

Q ss_pred             EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-cHhHHHHcCCCcCcEEEEEeCC
Q 015368           78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-EKDLAKEYNILAYPTLYLFVAG  137 (408)
Q Consensus        78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~~~~~g  137 (408)
                      +.|+.+||+.|++..-.+.+..    -.+.+..|+... .+++.+......+|++.. ++|
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~g----l~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g   57 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAG----ITVELREVELKNKPAEMLAASPKGTVPVLVL-GNG   57 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcC----CCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCC
Confidence            4578899999998765544432    145566666543 345656666678999842 346

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=81.64  E-value=9.7  Score=28.55  Aligned_cols=72  Identities=18%  Similarity=0.209  Sum_probs=44.6

Q ss_pred             cccccChhHHHHHhccCCeEEEEEecCCCCc--C----HHHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCe
Q 015368          164 TYSITTTDEAERILTVESKLVLGFLHDLEGM--E----SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPA  233 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~--~----~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~  233 (408)
                      ...+ +.++++.++......++ |+......  +    .-.+.++. .+.+....+.+   .+..+..+|++.   .+|+
T Consensus        11 ~~~v-d~~~ld~~l~~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~---~~Pa   85 (107)
T PF07449_consen   11 WPRV-DADTLDAFLAAPGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVR---RWPA   85 (107)
T ss_dssp             EEEE--CCCHHHHHHCCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-T---SSSE
T ss_pred             Ceee-chhhHHHHHhCCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCc---cCCe
Confidence            3344 46788999988777666 44433322  1    11233444 45566655544   566799999998   5899


Q ss_pred             EEEeecC
Q 015368          234 LIFLHLE  240 (408)
Q Consensus       234 l~~~~~~  240 (408)
                      ++++|.+
T Consensus        86 Lvf~R~g   92 (107)
T PF07449_consen   86 LVFFRDG   92 (107)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9999976

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	408
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		5e-16
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		7e-13
3idv_A	241	Crystal Structure Of The A0a Fragment Of Erp72 Leng		3e-12
2r2j_A	382	Crystal Structure Of Human Erp44 Length = 382		5e-12
2dj2_A	120	The Solution Structure Of The Second Thioredoxin Do		8e-12
1x5d_A	133	The Solution Structure Of The Second Thioredoxin-Li		6e-11
2alb_A	113	Nmr Structure Of The N-Terminal Domain A Of The Gly		2e-10
2dj1_A	140	The Solution Structure Of The First Thioredoxin Dom		2e-09
2k18_A	228	Solution Structure Of Bb' Domains Of Human Protein		4e-09
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		7e-09
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		2e-07
2ppt_A	155	Crystal Structure Of Thioredoxin-2 Length = 155		2e-06
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		2e-06
3vfi_A	104	Crystal Structure Of A Metagenomic Thioredoxin Leng		2e-06
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		3e-06
3hhv_A	110	The Crystal Structure Of The Thioredoxin A2 From Su		5e-06
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		1e-05
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		1e-05
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		1e-05
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		2e-05
1xw9_A	106	Drospohila Thioredoxin, Oxidized, P21 Length = 106		3e-05
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		4e-05
1xwa_A	111	Drospohila Thioredoxin, Oxidized, P41212 Length = 1		4e-05
1x5c_A	121	The Solution Structure Of The Second Thioredoxin-Li		5e-05
2cvk_A	110	Crystal Structure Of Thermus Thermophilus Thioredox		8e-05
2yzu_A	109	Crystal Structure Of Oxidized Thioredoxin From Ther		8e-05
3qdn_A	287	Putative Thioredoxin Protein From Salmonella Typhim		1e-04
2vm1_A	118	Crystal Structure Of Barley Thioredoxin H Isoform 1		1e-04
2o89_A	107	S. Aureus Thioredoxin P31tC32S MUTANT Length = 107		1e-04
3p2a_A	148	Crystal Structure Of Thioredoxin 2 From Yersinia Pe		1e-04
2puk_C	106	Crystal Srtucture Of The Binary Complex Between Fer		2e-04
3qou_A	287	Crystal Structure Of E. Coli Ybbn Length = 287		2e-04
1wmj_A	130	Solution Structure Of Thioredoxin Type H From Oryza		2e-04
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		2e-04
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-04
3aps_A	122	Crystal Structure Of Trx4 Domain Of Erdj5 Length =		2e-04
2xbi_A	108	Crystal Structure Of Schistosoma Mansoni Thioredoxi		3e-04
2xbq_A	117	Crystal Structure Of Reduced Schistosoma Mansoni Th		3e-04
3tco_A	109	Crystallographic And Spectroscopic Characterization		4e-04
1fb0_A	105	Crystal Structure Of Thioredoxin M From Spinach Chl		5e-04
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		6e-04
2o85_A	107	S. Aureus Thioredoxin P31t Mutant Length = 107		6e-04
1v98_A	140	Crystal Structure Analysis Of Thioredoxin From Ther		6e-04
2o87_A	106	S. Aureus Thioredoxin P31s Mutant Length = 106		6e-04
2bjx_A	110	Protein Disulfide Isomerase Length = 110		8e-04
1txx_A	108	Active-Site Variant Of E.Coli Thioredoxin Length =		8e-04
2o7k_A	107	S. Aureus Thioredoxin Length = 107		8e-04

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 82.4 bits (202), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 4/163 (2%)
Query: 57  DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           DV+ L   NF   +   G    ++V F+A WC  +K+LAPE+ AAA  LKG   L  VD 
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDC 61
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEA 173
               +   +Y +  YPTL +F  G     + G RT D I + ++++    +  + T +E 
Sbjct: 62  TANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEF 121
Query: 174 ERILTVESKLVLGFLHD-LEGMESEELAAASKLHSDVNFYQTT 215
           ++ ++ +   ++GF  D      SE L AAS L  +  F  T 
Sbjct: 122 KKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTN 164

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---LVMVDAY 114
           V+ L   NF+E +  ++ ++V FYA WC   K LAPE+A AA  LK E     L  VDA 
Sbjct: 9   VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 68
Query: 115 LEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREK 159
            E DLA++Y +  YPT+  F  G      ++   R  D I  W++++
Sbjct: 69  EESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115

>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72 Length = 241

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV---DAY 114
           V+ LN  NF  F+     V++ FYA WC   K+ APE+   A +LK +   + V   DA 
Sbjct: 17  VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT 76
Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
               LA  +++  YPT+ +   G +   + G RT++ I A VRE
Sbjct: 77  SASVLASRFDVSGYPTIKILKKG-QAVDYEGSRTQEEIVAKVRE 119

>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44 Length = 382

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 125/291 (42%), Gaps = 49/291 (16%)
Query: 55  AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE------ADL 108
             ++ SL+ +N  E +      +V FYA+WC +S+ L P F  A+ ++K E         
Sbjct: 4   GSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVF 63
Query: 109 VMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQFQFFGERTRDVISAWVREKMT------ 161
             VD     D+A+ Y I  YPTL LF  G   + ++ G+R+   ++ ++R++ +      
Sbjct: 64  ARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEI 123
Query: 162 LGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEEL----AAASKLHSDVNFYQTTSA 217
                ITT D ++R        ++G+    E  +S+        A+ LH D  F  +   
Sbjct: 124 RDLAEITTLDRSKRN-------IIGY---FEQKDSDNYRVFERVANILHDDCAFL-SAFG 172
Query: 218 DVAE--------FFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVV 269
           DV++          +  P    P  ++L    G  T F   +      N++     PLV 
Sbjct: 173 DVSKPERYSGDNIIYKPPGHSAPDXVYL----GAXTNFDVTY------NWIQDKCVPLVR 222
Query: 270 TLTIHNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAKAL---KGKVNML 317
            +T  N + + ++    L LF     ++ + +   EVA+ L   KG +N L
Sbjct: 223 EITFENGEELTEEGLPFLILFHXKEDTESLEIFQNEVARQLISEKGTINFL 273

>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 120

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 59  VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEA---DLVMVDAYL 115
           +SL   NF + +     ++V FYA WC   KKLAPE+  AAK L   +    L  VDA  
Sbjct: 10  LSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATE 69
Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYS 166
           + DLAK +++  YPTL +F  G R F + G R +  I  ++ E+   G  S
Sbjct: 70  QTDLAKRFDVSGYPTLKIFRKG-RPFDYNGPREKYGIVDYMIEQSGSGPSS 119

>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase A6 Length = 133

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 57  DVVSLNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAA----KMLKGEADLVMV 111
           DV+ L   +F + +  + +V MV FYA WC   K L PE+AAAA    +  KG+  L  V
Sbjct: 8   DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAV 67
Query: 112 DAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR-DVIS 153
           DA + + LA  Y I  +PT+ +F  G     + G RTR D++S
Sbjct: 68  DATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVS 110

>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The Glycoprotein Chaperone Erp57 Length = 113

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 57  DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           DV+ L   NF   +   G    ++V F+A WC   K+LAPE+ AAA  LKG   L  VD 
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVPLAKVDC 61
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159
               +   +Y +  YPTL +F  G     + G RT D I + ++++
Sbjct: 62  TANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQ 107

>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 140

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 61  LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV---DAYLEK 117
           LN  NF  F+     V++ FYA WC   K+ APE+   A  LK     + V   DA    
Sbjct: 22  LNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS 81
Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            LA ++++  YPT+ +   G +   + G RT++ I A VRE
Sbjct: 82  MLASKFDVSGYPTIKILKKG-QAVDYDGSRTQEEIVAKVRE 121

>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein Disulfide Isomerase Length = 228

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 162 LGTYSITTTDE---AERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSAD 218
           LG+ + TT  +   AE ++      V+GF  D+E   +++   A++   D+ F  T+++D
Sbjct: 3   LGSPAATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSD 62
Query: 219 VAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQF 278
           V   F  +   K   ++F   + G+   F  + T+  + +F+ H + PLV+  T   A  
Sbjct: 63  V---FSKYQLDKDGVVLFKKFDEGRNN-FEGEVTKENLLDFIKHNQLPLVIEFTEQTAPK 118
Query: 279 VF-QDPRKQLWLFAPAYGS--DKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQ 335
           +F  + +  + LF P   S  D  +  F+  A++ KGK+   L ++++ +     +R+ +
Sbjct: 119 IFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI---LFIFIDSDHTD-NQRILE 174
Query: 336 EFGVSGN---APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
            FG+      A R+I       K    + ELT   I  F   FLE K+
Sbjct: 175 FFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKI 222

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 14/214 (6%)
Query: 173 AERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRP 232
           AE ++      V+GF  D+E   +++   A++   D+ F  T+++DV   F  +   K  
Sbjct: 28  AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDV---FSKYQLDKDG 84
Query: 233 ALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVF-QDPRKQLWLFA 291
            ++F   + G+   F  + T+  + +F+ H + PLV+  T   A  +F  + +  + LF 
Sbjct: 85  VVLFKKFDEGRNN-FEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFL 143
Query: 292 PAYGS--DKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN---APRV 346
           P   S  D  +  F+  A++ KGK+   L ++++ +     +R+ + FG+      A R+
Sbjct: 144 PKSVSDYDGKLSNFKTAAESFKGKI---LFIFIDSDHTD-NQRILEFFGLKKEECPAVRL 199
Query: 347 IAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL 380
           I       K    + ELT   I  F   FLE K+
Sbjct: 200 ITLEEEMTKYKPESEELTAERITEFCHRFLEGKI 233

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYLE 116
           VV L   +F+E++  +  V+  F+A WC   K +APE+  AA+ L +    L  +D    
Sbjct: 16  VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN 75
Query: 117 KDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVI 152
           +DL  E+NI  +P+L +F          + G RT + I
Sbjct: 76  QDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAI 113

>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2 Length = 155

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 76  VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
           ++V F+A WC   +++AP+F AAA  L G+  L  +D      +A  + I   P   LF 
Sbjct: 67  LLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFH 126
Query: 136 AGVRQFQFFGERTRDVISAWVREKM 160
            G    +  G R    +  +VR K+
Sbjct: 127 KGRELARAAGARPASELVGFVRGKL 151

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 63  GKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDAYLEKDL 119
           GK F    M   ++V++ FYA WC   K+L P + +  K  KG+ DLV+  +DA      
Sbjct: 14  GKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDIT 73
Query: 120 AKEYNILAYPTLYLFVAGVRQ--FQF-FGERTRDVISAWVREKMT 161
             +Y +  +PT+Y   +G ++   +F  G R  + +S ++ E  T
Sbjct: 74  NDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT 118

>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin Length = 104

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 76  VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
           +++MF  +WC   KK+ P F   A  ++G+     +DA   +    E NI   P+L LFV
Sbjct: 20  IIIMFTGSWCQPCKKMKPTFEEMASQMEGDIRFAYMDAEDAEKTMAELNIRTLPSLALFV 79
Query: 136 AGVRQFQFFGERTRDVISAWVREKM 160
            G+ +  F G   +  +  W+   +
Sbjct: 80  DGMIREVFSGTMNKSDLRYWINNNI 104

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 55  AKDVVSLNGKNFS-EFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           + DV+ L   NF+ E +  +   +V FYA WC   ++L PE+  AA  LK    +  V+A
Sbjct: 16  SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNA 75
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQ-FFGERTRDVI 152
              + L  +Y +  +PT+ +F A   + + + G RT + I
Sbjct: 76  DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAI 115

>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From Sulfolobus Solfataricus Length = 110

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
           V  LN KNF EF+ KN+ V+V F+A WC     LAP     A     +     ++    +
Sbjct: 8   VKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYP-QVAFGKLNTEESQ 66
Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152
           D+A  Y I++ PT+  F  G    Q  G   R+ I
Sbjct: 67  DIAMRYGIMSLPTIMFFKNGELVDQILGAVPREEI 101

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 58  VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           +  L  K+F + +   N   +V FYA WC   KKL+  F  AAK L G   +  V+  L 
Sbjct: 19  ISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLN 78
Query: 117 KD--LAKEYNILAYPTLYLF 134
           K+  L  +Y++  +PTL +F
Sbjct: 79  KNKALCAKYDVNGFPTLMVF 98

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM----LKGEADLVMVDA 113
           V++L   NF + + +     + FYA WC   K LAP +   +K     L G   +  VD 
Sbjct: 7   VLALTENNFDDTIAEGIT-FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 64
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
             E+++  +Y++  YPTL LF  G +  +  G R  D +  +V
Sbjct: 65  TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 107

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM----LKGEADLVMVDA 113
           V++L   NF + + +     + FYA WC   K LAP +   +K     L G   +  VD 
Sbjct: 9   VLALTENNFDDTIAEGIT-FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 66
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
             E+++  +Y++  YPTL LF  G +  +  G R  D +  +V
Sbjct: 67  TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 109

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)
Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKM----LKGEADLVMVDA 113
           V++L   NF + + +     + FYA WC   K LAP +   +K     L G   +  VD 
Sbjct: 2   VLALTENNFDDTIAEGIT-FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAG-VKIAEVDC 59
Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
             E+++  +Y++  YPTL LF  G +  +  G R  D +  +V
Sbjct: 60  TAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 102

>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21 Length = 106

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
           KD   L+G+  ++  GK   V++ F+A WC   K ++P+    +        ++ VD   
Sbjct: 6   KDKADLDGQ-LTKASGKL--VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 62
Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFG---ERTRDVISA 154
            +D+A EYNI + PT      GV+  +F G   +R  DVI A
Sbjct: 63  CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 104

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 64  KNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDAYLEKDLA 120
           +NF E +  +N++V++ FYA WC   K L P++    + L  + ++V+  +DA    D+ 
Sbjct: 35  ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDA-TANDVP 93
Query: 121 KEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMTLGTYS 166
             Y +  +PT+Y   A   +   ++ G R      ++++ + T G  S
Sbjct: 94  SPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATSGPSS 141

>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212 Length = 111

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
           KD   L+G+  ++  GK   V++ F+A WC   K ++P+    +        ++ VD   
Sbjct: 11  KDKADLDGQ-LTKASGKL--VVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE 67
Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFG---ERTRDVISA 154
            +D+A EYNI + PT      GV+  +F G   +R  DVI A
Sbjct: 68  CEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIKA 109

>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like Domain Of Human Protein Disulfide-Isomerase Length = 121

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 61  LNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL 119
           L GKNF +    + +NV V FYA WC   K+LAP +    +  K   ++V+       + 
Sbjct: 12  LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE 71
Query: 120 AKEYNILAYPTLYLFVAGVRQ--FQFFGERTRD 150
            +   + ++PTL  F A   +    + GERT D
Sbjct: 72  VEAVKVHSFPTLKFFPASADRTVIDYNGERTLD 104

>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin Length = 110

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 59  VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD 118
           + +  +NF E +G++  V+V F+A WC   + +AP     AK  +G+  +  +D      
Sbjct: 5   IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 64
Query: 119 LAKEYNILAYPTLYLFVAG 137
            A  Y + + PT+ LF  G
Sbjct: 65  TAXRYRVXSIPTVILFKDG 83

>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus Thermophilus Hb8 Length = 109

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 59  VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD 118
           + +  +NF E +G++  V+V F+A WC   + +AP     AK  +G+  +  +D      
Sbjct: 4   IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENPK 63
Query: 119 LAKEYNILAYPTLYLFVAG 137
            A  Y + + PT+ LF  G
Sbjct: 64  TAXRYRVXSIPTVILFKDG 82

>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK------LAPEFAAAAKMLKGEADLV 109
           +++V++N  N  + + ++    V+FY    +WS++      L P   + A    G+  L 
Sbjct: 7   QNIVNINESNLQQTLEQSXTTPVLFY----FWSERSQHCLQLTPVLESLAAQYHGQFILA 62
Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
            +D   E+ +A ++ + A PT+YLF  G     F G +  + I A +
Sbjct: 63  KLDCDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALL 109

>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1 Crystallized Using Ammonium Sulfate As Precipitant Length = 118

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 62  NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK 121
           NGK+  +       V++ F A+WC   + +AP FA  AK   G A  + VD    KD+A+
Sbjct: 23  NGKDTGKL------VIIDFTASWCGPCRVIAPVFAEYAKKFPG-AIFLKVDVDELKDVAE 75
Query: 122 EYNILAYPTLYLFVAGVRQFQFFGERTRDV 151
            YN+ A PT      G +     G R  D+
Sbjct: 76  AYNVEAMPTFLFIKDGEKVDSVVGGRKDDI 105

>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT Length = 107

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 77  MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136
           +V F+A WC  SK +AP     A   +G+AD++ +D       A +Y +++ PTL +F  
Sbjct: 24  LVDFWATWCGTSKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 137 G 137
           G
Sbjct: 84  G 84

>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis Length = 148

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 48/109 (44%)
Query: 53  LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112
           L+  +V++   +   + +  +   ++ F+A WC   +  AP FA  A    G+   V V+
Sbjct: 35  LFDGEVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVN 94
Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT 161
              E  L+  + I + PT+ L+  G       G   +     W+ E+++
Sbjct: 95  TEAEPALSTRFRIRSIPTIXLYRNGKXIDXLNGAVPKAPFDNWLDEQLS 143

>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin: Thioredoxin Reductase And Thioredoxin M Length = 106

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 57  DVVSLNGKNFSEFMGKNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
           +V  +N  ++ EF+ ++   VMV F+A WC  SK +AP     AK   G+  +  ++   
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT 161
              +A +YNI + PT+  F  G R+    G   +  ++  + + ++
Sbjct: 61  APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYLS 106

>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 10/107 (9%)
Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKK------LAPEFAAAAKMLKGEADLV 109
           +++V++N  N  + + ++    V+FY    +WS++      L P   + A    G+  L 
Sbjct: 7   ENIVNINESNLQQVLEQSMTTPVLFY----FWSERSQHCLQLTPILESLAAQYNGQFILA 62
Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
            +D   E+ +A ++ + A PT+YLF  G     F G +  + I A +
Sbjct: 63  KLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALL 109

>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa Length = 130

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 76  VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
           V++ F A+WC   + +AP FA  AK   G A  + VD    K++A++YN+ A PT     
Sbjct: 39  VIIDFTASWCGPCRFIAPVFAEYAKKFPG-AVFLKVDVDELKEVAEKYNVEAMPTFLFIK 97
Query: 136 AGVRQFQFFGERTRDVISAWVR 157
            G    +  G R  D+ +  V+
Sbjct: 98  DGAEADKVVGARKDDLQNTIVK 119

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
           V +L  +NF          +V F+A W   S+ L PE   A+ +L G+  +  +D  + +
Sbjct: 442 VTTLGPQNFP--ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHE 499
Query: 118 DLAKEYNILAYPTLYLF 134
            L   YNI AYPT  +F
Sbjct: 500 GLCNMYNIQAYPTTVVF 516

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/207 (21%), Positives = 90/207 (43%), Gaps = 22/207 (10%)
Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           ++++L  + F   +       V FY+     S  LAP +   AK + G   +  V+   +
Sbjct: 117 EIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDD 176
Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW----VREKMT-LGT------- 164
           + L +   + +YP+L++F +G+   ++ G+R+++ + A+    VR  +T L T       
Sbjct: 177 RMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAI 236
Query: 165 ---------YSITTTDEAERILTVESKLVL-GFLHDLEGMESEELAAASKLHSDVNFYQT 214
                    + IT   + E  LT +++L L G L  L  +   +  A   L   ++   +
Sbjct: 237 ETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTAS 296
Query: 215 TSADVAEFFHIHPKSKRPALIFLHLEA 241
           T+A       ++ + K   L    L+A
Sbjct: 297 TTAYFPPGATLNDREKSSVLFLNSLDA 323

>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5 Length = 122

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 59  VSLNGKNFSE--FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           + L  + F+E    GK   V V FYA WC   +  APEF   A+M+KG+     VD    
Sbjct: 6   IDLTPQTFNEKVLQGKTHWV-VDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAY 64
Query: 117 KDLAKEYNILAYPTLYLF 134
               ++  I AYP++ L+
Sbjct: 65  PQTCQKAGIKAYPSVKLY 82

>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At 1.6 Angstrom Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 72  KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131
           KN+ V+V F+A WC   K +AP F   ++  K +A  V VD    ++ A++YNI A PT 
Sbjct: 23  KNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPT- 79
Query: 132 YLFVAGVRQFQFFGERTRDVISA 154
             F+A ++     GE+  DV+ A
Sbjct: 80  --FIA-IKN----GEKVGDVVGA 95

>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni Thioredoxin Pre-Protein At 1.7 Angstrom Length = 117

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 10/83 (12%)
Query: 72  KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131
           KN+ V+V F+A WC   K +AP F   ++  K +A  V VD    ++ A++YNI A PT 
Sbjct: 32  KNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDVDKLEETARKYNISAMPT- 88
Query: 132 YLFVAGVRQFQFFGERTRDVISA 154
             F+A ++     GE+  DV+ A
Sbjct: 89  --FIA-IKN----GEKVGDVVGA 104

>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of Sulfolobus Solfataricus Trxa1 Provide Insights Into The Determinants Of Thioredoxin Fold Stability Length = 109

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 46/100 (46%)
Query: 61  LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA 120
           L  +NF E +  N+ V+V  +A WC       P +   A+  KG+A    ++    + +A
Sbjct: 9   LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIA 68
Query: 121 KEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160
            +Y++L  PT  +FV G       G    D + + V + +
Sbjct: 69  DKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL 108

>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach Chloroplast (Reduced Form) Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 57  DVVSLNGKNFSEFMGKNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
           +V  +N  ++ EF+ ++   VMV F+A WC   K +AP     AK   G+  +  ++   
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60
Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS 153
              +A +YNI + PT+  F  G R+    G   +  ++
Sbjct: 61  APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLT 98

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/100 (22%), Positives = 51/100 (51%)
Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           ++++L  + F   +       V FY+  C     LAP +   AK + G   +  V+   +
Sbjct: 98  EIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDD 157
Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
           + L +   + +YP+L++F +G+   ++ G+R+++ + A+ 
Sbjct: 158 RMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFA 197

>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant Length = 107

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 77  MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136
           +V F+A WC   K +AP     A   +G+AD++ +D       A +Y +++ PTL +F  
Sbjct: 24  LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 137 G 137
           G
Sbjct: 84  G 84

>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus Thermophilus Length = 140

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 42/95 (44%)
Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
           VV  + K F++ +      +V F+A WC   + ++P     A+   G   +V V+     
Sbjct: 35  VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP 94
Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152
            LA  Y + + PTL LF  G     + G   R V+
Sbjct: 95  GLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVL 129

>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant Length = 106

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 77  MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136
           +V F+A WC   K +AP     A   +G+AD++ +D       A +Y +++ PTL +F  
Sbjct: 23  LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 82
Query: 137 G 137
           G
Sbjct: 83  G 83

>pdb|2BJX|A Chain A, Protein Disulfide Isomerase Length = 110

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 173 AERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRP 232
           AE ++      V+GF  D+E   +++   A++   D+ F  T+++DV   F  +   K  
Sbjct: 11  AESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDV---FSKYQLDKDG 67
Query: 233 ALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNA 276
            ++F   + G+   F  + T+  + +F+ H + PLV+  T   A
Sbjct: 68  VVLFKKFDEGR-NNFEGEVTKENLLDFIKHNQLPLVIEFTEQTA 110

>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 58  VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           ++ L   +F ++ +  +  ++V F+A WC W K +AP     A   +G+  +  ++    
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNIDQN 63
Query: 117 KDLAKEYNILAYPTLYLFVAG 137
              A +Y I   PTL LF  G
Sbjct: 64  PGTAPKYGIRGIPTLLLFKNG 84

>pdb|2O7K|A Chain A, S. Aureus Thioredoxin Length = 107

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 77  MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA 136
           +V F+A WC   K +AP     A   +G+AD++ +D       A +Y +++ PTL +F  
Sbjct: 24  LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKD 83
Query: 137 G 137
           G
Sbjct: 84  G 84

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	6e-54
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	7e-54
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	5e-18
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	1e-53
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	4e-52
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	4e-45
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	1e-19
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	2e-07
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-36
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	4e-33
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-22
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	9e-20
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-19
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	1e-36
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	1e-34
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	2e-24
1mek_A	120	Protein disulfide isomerase; electron transport, r	1e-34
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	6e-32
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	7e-31
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	2e-29
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	5e-29
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	4e-28
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	1e-26
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	9e-25
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	5e-20
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	4e-12
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	5e-08
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	9e-25
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	1e-24
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	2e-23
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	4e-23
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	1e-22
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	3e-19
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	3e-19
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-19
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	5e-19
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	4e-14
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-13
2l57_A	126	Uncharacterized protein; structural genomics, unkn	3e-13
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	1e-11
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	3e-11
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	4e-11
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	6e-11
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	2e-10
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	2e-08
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	2e-10
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	4e-10
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	5e-10
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	7e-10
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	3e-09
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	5e-09
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	7e-09
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	7e-09
2kuc_A	130	Putative disulphide-isomerase; structural genomics	8e-09
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	9e-09
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	1e-08
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	1e-08
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	1e-08
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	2e-08
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	2e-08
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	5e-08
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	6e-08
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	6e-08
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	7e-08
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	1e-07
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	1e-07
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	2e-07
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	2e-07
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	3e-07
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	4e-07
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	4e-07
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	4e-07
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	5e-07
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	6e-07
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	6e-07
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	6e-07
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	6e-07
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	6e-07
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	6e-07
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	6e-07
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	7e-07
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	7e-07
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	8e-07
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	8e-07
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	8e-07
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	9e-07
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	1e-06
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	1e-06
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	1e-06
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	2e-06
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	2e-06
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	2e-06
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	3e-06
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	3e-06
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	4e-06
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	4e-06
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	4e-06
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	5e-06
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	7e-06
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	1e-05
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	1e-05
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	1e-05
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	2e-05
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	2e-05
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	2e-05
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	3e-05
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	5e-05
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	8e-05
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	8e-05
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	9e-05
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	1e-04
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	1e-04
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	1e-04
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	1e-04
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	1e-04
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	2e-04
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	2e-04
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	2e-04
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	3e-04
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	3e-04
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	3e-04
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	4e-04
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	5e-04
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	8e-04

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  182 bits (464), Expect = 6e-54
 Identities = 67/336 (19%), Positives = 129/336 (38%), Gaps = 17/336 (5%)

Query: 55  AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD------L 108
             ++ SL+ +N  E +      +V FYA+WC +S+ L P F  A+ ++K E         
Sbjct: 4   GSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVF 63

Query: 109 VMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQ-FFGERTRDVISAWVREKMTLGTYSI 167
             VD     D+A+ Y I  YPTL LF  G+   + + G+R+   ++ ++R++ +     I
Sbjct: 64  ARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEI 123

Query: 168 TTTDEAERILTVESKLVLGFLHDLEGMESEEL-AAASKLHSDVNFYQTTSADVAEFFHIH 226
               E    L    + ++G+    +          A+ LH D  F  +   DV++     
Sbjct: 124 RDLAEIT-TLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFL-SAFGDVSKPER-- 179

Query: 227 PKSKRPALIFLHLEAGKATPFRHQFTRL-AIANFVTHTKHPLVVTLTIHNAQFVFQDPRK 285
             S    +      +     +    T      N++     PLV  +T  N + + ++   
Sbjct: 180 -YSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLP 238

Query: 286 QLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR 345
            L LF     ++ + +   EVA+ L  +   +  ++   + +     +        + P 
Sbjct: 239 FLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHA--DCDKFRHPLLHIQKTPADCPV 296

Query: 346 VIAYSARDAKKY-VLNGELTLSSIKSFGEEFLEDKL 380
           +   S R    +      L    +K F  +    KL
Sbjct: 297 IAIDSFRHMYVFGDFKDVLIPGKLKQFVFDLHSGKL 332

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score =  185 bits (469), Expect = 7e-54
 Identities = 67/333 (20%), Positives = 121/333 (36%), Gaps = 12/333 (3%)

Query: 57  DVVSLNGKNFSEFMGKNRN---VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           DV+ L   NF   +    +   ++V F+A WC  +K+LAPE+ AAA  LKG   L  VD 
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDC 61

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEA 173
               +   +Y +  YPTL +F  G     + G RT D I + ++++    +  + T +E 
Sbjct: 62  TANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEF 121

Query: 174 ERILTVESKLVLGFLHDLEGMESEE-LAAASKLHSDVNFYQTTSADVAEFFHIHPKS--- 229
           ++ ++ +   ++GF  D       E L AAS L  +  F  T    +   +  + +    
Sbjct: 122 KKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEGIIL 181

Query: 230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWL 289
            RP+ +    E         + T   I  F+      +   +T  N   +        + 
Sbjct: 182 FRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYY 241

Query: 290 FA----PAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG-VGRRVSQEFGVSGNAP 344
                  A GS+        VAK      + L        +          E        
Sbjct: 242 DVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPV 301

Query: 345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE 377
             I  +  +             +++ F +++ +
Sbjct: 302 VAIRTAKGEKFVMQEEFSRDGKALERFLQDYFD 334

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 84.9 bits (209), Expect = 5e-18
 Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 6/122 (4%)

Query: 45  NNNHTWPLLYAKDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK 103
             +   P      V  +  +NF E    +N++V++ FYA WC   K L P++    + L 
Sbjct: 341 LKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLS 400

Query: 104 GEADLVM--VDAYLEKDLAKEYNILAYPTLYLFVAGVRQ--FQFFGERTRDVISAWVREK 159
            + ++V+  +DA    D+   Y +  +PT+Y   A  +    ++ G R      ++++ +
Sbjct: 401 KDPNIVIAKMDAT-ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQRE 459

Query: 160 MT 161
            T
Sbjct: 460 AT 461

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score =  181 bits (459), Expect = 1e-53
 Identities = 62/346 (17%), Positives = 124/346 (35%), Gaps = 30/346 (8%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD--------L 108
            VVSL  KNF + + K  +V+ ++Y       K    +F     +L+  A          
Sbjct: 12  RVVSLTEKNFKQVLKKY-DVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGF 70

Query: 109 VMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSIT 168
           VMVDA  E  LAK+       +LY+     R  +F GE   DV+  ++ + +      I 
Sbjct: 71  VMVDAKKEAKLAKKLGFDEEGSLYVLKGD-RTIEFDGEFAADVLVEFLLDLIEDPVEIIN 129

Query: 169 TTDEAERILTVESKL-VLGFLHDLEGMESEEL-AAASKLHSDVNFYQTTSADVAEFFHIH 226
           +  E +    +E ++ ++GF    E    +    AA      + F+ T    VA+   + 
Sbjct: 130 SKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSL- 188

Query: 227 PKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQ 286
                    +              +T   +  FV   + P +  L   +    ++D    
Sbjct: 189 --KMNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNG 246

Query: 287 LWLFA----PAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQ---EFGV 339
           + + A          + +   ++VA+      ++     V ++ +     V+     F +
Sbjct: 247 IHIVAFAERSDPDGYEFLEILKQVARDNTDNPDL---SIVWIDPDDFPLLVAYWEKTFKI 303

Query: 340 SGNAPRVIAYSARDAKKYVL-----NGELTLSSIKSFGEEFLEDKL 380
               P++   +  DA    +     +   T   ++ + E+ L  K+
Sbjct: 304 DLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLSGKI 349

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  177 bits (450), Expect = 4e-52
 Identities = 51/346 (14%), Positives = 131/346 (37%), Gaps = 30/346 (8%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWC------YWSKKLAPEFAAAAKMLKGEA-DLV 109
            V+++N KN+     K   + ++++             +        AA++L+ +     
Sbjct: 14  RVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFG 73

Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITT 169
           +VD+  +  +AK+  +    ++Y+F       ++ GE + D +  ++ + +      I  
Sbjct: 74  LVDSEKDAAVAKKLGLTEEDSIYVFKEDEV-IEYDGEFSADTLVEFLLDVLEDPVELIEG 132

Query: 170 TDEAERILTVESK-LVLGFLHDLEGMESEEL-AAASKLHSDVNFYQTTSADVAEFFHIHP 227
             E +    +E +  ++G+  + +    +    AA + H  + F+ T  + VA+   +  
Sbjct: 133 ERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDSKVAKKLTL-- 190

Query: 228 KSKRPALIFLH-LEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQ 286
             K   + F         T      +   I NFV   +   +  L   +    ++D    
Sbjct: 191 --KLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDG 248

Query: 287 LWLFAPAYGSD----KVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRV---SQEFGV 339
           + + A A  +D    + +   + VA+      ++     + ++ +     V    + F +
Sbjct: 249 IHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDL---SIIWIDPDDFPLLVPYWEKTFDI 305

Query: 340 SGNAPRVIAYSARDAKKYVL-----NGELTLSSIKSFGEEFLEDKL 380
             +AP++   +  DA    +         +   ++ + E+ LE ++
Sbjct: 306 DLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEI 351

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score =  162 bits (410), Expect = 4e-45
 Identities = 61/341 (17%), Positives = 122/341 (35%), Gaps = 29/341 (8%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE-ADLVMVDAY 114
             VV L   +F+E++  +  V+  F+A WC   K +APE+  AA+ L  +   L  +D  
Sbjct: 14  SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT 73

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQ--FQFFGERTRDVISAWVREKMTLGTYSITTTDE 172
             +DL  E+NI  +P+L +F          + G RT + I  ++ ++       +     
Sbjct: 74  ENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPA 133

Query: 173 AERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRP 232
                T  + +++          +   + A+K  +D +F    +AD      I+  S   
Sbjct: 134 YLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYLPSAMD 193

Query: 233 ALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLF-A 291
             +  + +                  ++     P    +         +      +LF  
Sbjct: 194 EPVVYNGKKADIADAD------VFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYN 247

Query: 292 PAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSA 351
                ++    F E+AK  +G +N     +V +++   G R +    +    P    +  
Sbjct: 248 DEEELEEYKPLFTELAKKNRGLMN-----FVSIDARKFG-RHAGNLNMKEQFPLFAIHDM 301

Query: 352 RDAKKYVLN-------------GELTLSSIKSFGEEFLEDK 379
            +  KY L                L   +I+S  ++FL+  
Sbjct: 302 TEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGD 342

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 89.5 bits (221), Expect = 1e-19
 Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 9/150 (6%)

Query: 56  KDVVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM---V 111
             V  L GKN  E +    ++V+V++YA WC   K+LAP +   A         V+   +
Sbjct: 358 SSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKL 417

Query: 112 DAYLEKDLAKEYNILAYPTLYLFVAGVRQ--FQFFGERTRDVISAWVREKMTLGTYSITT 169
           D    ++  +   I  YPT+ L+  G +     + G R+ D +  +++E           
Sbjct: 418 DH--TENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKAL 475

Query: 170 TDEAERILTVESKLVLGFLHDLEGMESEEL 199
            +EA+     E       L D E    +EL
Sbjct: 476 YEEAQEK-AAEEADADAELADEEDAIHDEL 504

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 31/210 (14%), Positives = 74/210 (35%), Gaps = 10/210 (4%)

Query: 12  TSSIILFKLYLFPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVS-LNGKNFSEFM 70
            ++   FKL ++ P+   E +     + ++ + +    W  + A      ++G  F++++
Sbjct: 176 ENADDDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYV 235

Query: 71  GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130
                +  +FY +     ++  P F   AK  +G  + V +DA      A   N+     
Sbjct: 236 ESGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFP 294

Query: 131 LYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITT--------TDEAERILTVESK 182
           L+         ++   +  +     + +K+ L + +I +                    +
Sbjct: 295 LFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFE 354

Query: 183 LVLGFLHDLEGMESEELAAASKLHSDVNFY 212
                +  L G   +E+    K    V +Y
Sbjct: 355 NQDSSVFQLVGKNHDEIVNDPKKDVLVLYY 384

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  141 bits (355), Expect = 1e-36
 Identities = 65/341 (19%), Positives = 120/341 (35%), Gaps = 34/341 (9%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
            V +L  +NF          +V F+A W   S+ L PE   A+ +L G+  +  +D  + 
Sbjct: 441 HVTTLGPQNFPA--SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIH 498

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERI 176
           + L   YNI AYPT  +F       ++ G  + + I  ++ +       S+T +   E +
Sbjct: 499 EGLCNMYNIQAYPTTVVFNQS-SIHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELV 557

Query: 177 LTVESK--LVLGFLHDLEG----MESEELAAASKLHSDVNFYQ---TTSADVAEFFHIHP 227
              +     ++ F          +  E    A  L   +N                ++  
Sbjct: 558 KQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENV-- 615

Query: 228 KSKRPALIFLHLEAGKATPFRHQF----TRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP 283
             + P + F   ++ KA  +           ++ ++         + LT           
Sbjct: 616 -QRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQG 674

Query: 284 RKQLWL---FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV 339
            K  W+   +AP  G S      FE +A+ +KGKV        +++ +    +  Q+ G+
Sbjct: 675 -KTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKV-----RAGKVDCQ-AYPQTCQKAGI 727

Query: 340 SGNAPRVIAYSARDAKKYVL---NGELTLSSIKSFGEEFLE 377
               P V  Y    AKK +           +I +     LE
Sbjct: 728 KA-YPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLE 767

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score =  131 bits (329), Expect = 4e-33
 Identities = 50/334 (14%), Positives = 119/334 (35%), Gaps = 20/334 (5%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
           +++L  + F   +       V FY+     S  LAP +   AK + G   +  V+   ++
Sbjct: 118 IITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDR 177

Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERIL 177
            L +   + +YP+L++F +G+   ++ G+R+++ + A+  + +      ++T +    I 
Sbjct: 178 MLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIE 237

Query: 178 T---VESKLVLGFLHDLEGMES--EELAAASKLHSDVNFYQ---TTSADVAEFFHIHPKS 229
           T        ++ F    E   +    L  +  L   VN           + +       +
Sbjct: 238 TAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTAST 297

Query: 230 KR--PALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQL 287
               P    L+     +  F +      I   + H   P    L+ +  +      R  +
Sbjct: 298 TAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIH-NLPDFELLSANQLEDRLAHHRWLV 356

Query: 288 WLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVI 347
           +        +      +++   LK +   ++              +  +  V    P + 
Sbjct: 357 FFHFGKN-ENANDPELKKLKTLLKNEHIQVVRFDCSSAPG-----ICSDLYVFQ--PSLA 408

Query: 348 AYSARDAKKY-VLNGELTLSSIKSFGEEFLEDKL 380
            +  +  K+Y + +G+  L  I +F +E +   +
Sbjct: 409 VFKGQGTKEYEIHHGKKILYDILAFAKESVNSHV 442

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 99.4 bits (247), Expect = 1e-22
 Identities = 46/354 (12%), Positives = 106/354 (29%), Gaps = 33/354 (9%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAP--EFAAAAKMLKGEADLVMVDA 113
             V  L+  NF   +       V +   +C   +           + ML G  ++  VD 
Sbjct: 222 STVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVNVGWVDC 281

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRD---VISAWVREKMTLGTYSITTT 170
             +  L K  +  A  T Y         +                  E +         +
Sbjct: 282 DAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLS 341

Query: 171 DEAERILTVESKLVLGFL--HDLEGMESEELAAASKLHSD-VNFYQ---TTSADVAEFFH 224
                      + ++ F    +    + E     + L ++ +   +   +++  +    +
Sbjct: 342 ANQLEDRLAHHRWLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLY 401

Query: 225 IHPKSKRPALIFLHLEAGKA-TPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP 283
           +     +P+L     +  K       +     I  F   + +  V TL   N    F   
Sbjct: 402 V----FQPSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQN----FPAS 453

Query: 284 RKQLWL---FAPAYGSDKVIL-TFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV 339
            K+ WL   FAP     + +L    + +  L G++         ++   +   +   + +
Sbjct: 454 DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQL-----KVGTLDCT-IHEGLCNMYNI 507

Query: 340 SGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKLLNQSDQISETILK 393
               P  + ++     +Y   G  +   I  F E+     +++ +      ++K
Sbjct: 508 QA-YPTTVVFNQSSIHEY--EGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVK 558

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 90.6 bits (224), Expect = 9e-20
 Identities = 41/223 (18%), Positives = 75/223 (33%), Gaps = 21/223 (9%)

Query: 56  KDVVSLNGKNFSEFMG---KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112
             VVSL    F+E +     +   MV FY+ W + S+ L PE+   A+ L G  ++  VD
Sbjct: 543 PSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVD 602

Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFF-----GERTRDVISAWVREKMTLGTYSI 167
                    + N+  YP +  +     +   +       R    + +W    +   +  +
Sbjct: 603 CGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDL 662

Query: 168 TTTDEAERILTVESKLVLGFLHDLEG----MESEELAAASKLHSDVNFYQ---TTSADVA 220
           T     E++L  ++  V+ F     G       E    A  +   V   +          
Sbjct: 663 TPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQTC 722

Query: 221 EFFHIHPKSKRPALIFLHLEAGKATPFRHQF---TRLAIANFV 260
           +   I      P++     E  K + +  Q        IA  +
Sbjct: 723 QKAGI---KAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALI 762

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 88.3 bits (218), Expect = 5e-19
 Identities = 57/379 (15%), Positives = 122/379 (32%), Gaps = 45/379 (11%)

Query: 22  LFPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFY 81
            FPP  +  D +        +         +++      L   N  E    +   +V F+
Sbjct: 300 YFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFH 359

Query: 82  ANWCYWSKKLAPEFAAAAKMLKGEA-DLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ 140
             +        PE      +LK E   +V  D      +  +  +   P+L +F     +
Sbjct: 360 --FGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYV-FQPSLAVFKGQGTK 416

Query: 141 F--QFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVL--------GFLHD 190
                 G++    I A+ +E +     ++      +     + +  L             
Sbjct: 417 EYEIHHGKKILYDILAFAKESVNSHVTTLG----PQNFPASDKEPWLVDFFAPWSP--PS 470

Query: 191 LEGMESEELAAASKLHSDVNFYQ---TTSADVAEFFHIHPKSKRPALIFLHLEAGKATPF 247
              +  E   A++ L+  +       T    +   ++I      P  +           +
Sbjct: 471 RA-LLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQ---AYPTTVV--FNQSSIHEY 524

Query: 248 RHQFTRLAIANFVTHTKHPLVVTLTIHN-AQFVFQDPRKQLWL---FAPAYGSDKVIL-T 302
               +   I  F+   ++P VV+LT     + V Q    ++W+   ++P     +V++  
Sbjct: 525 EGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPE 584

Query: 303 FEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKY----V 358
           ++ +A+ L G +N      V+            +  V    P +  Y  + +K Y     
Sbjct: 585 WKRMARTLTGLIN---VGSVDCGQY---HSFCTQENVQR-YPEIRFYPQKSSKAYQYHSY 637

Query: 359 LNGELTLSSIKSFGEEFLE 377
                   S++S+G  FL 
Sbjct: 638 NGWNRDAYSLRSWGLGFLP 656

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score =  134 bits (338), Expect = 1e-36
 Identities = 45/210 (21%), Positives = 77/210 (36%), Gaps = 22/210 (10%)

Query: 53  LYAKD--VVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADL- 108
            Y  D  +  L  K+F + +   N   +V FYA WC   KKL+  F  AAK L G   + 
Sbjct: 12  FYDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVA 71

Query: 109 -VMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQ-----------------FFGERTRD 150
            V  D    K L  +Y++  +PTL +F                         + G RT  
Sbjct: 72  AVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLA 131

Query: 151 VISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVN 210
            I  +   ++          D    +L    KL +      + +     + A       +
Sbjct: 132 PIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGKFD 191

Query: 211 FYQTTSADVAEFFHIHPKSKRPALIFLHLE 240
           FY  ++  + +   ++P  ++   IF +L+
Sbjct: 192 FYSISNKKLKQLTDMNPTYEKTPEIFKYLQ 221

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score =  127 bits (321), Expect = 1e-34
 Identities = 51/231 (22%), Positives = 89/231 (38%), Gaps = 25/231 (10%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM---VDA 113
            V+ LN  NF  F+     V++ FYA WC   K+ APE+   A +LK +   +    +DA
Sbjct: 16  GVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDA 75

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE------KMTLGTYSI 167
                LA  +++  YPT+ +   G     + G RT++ I A VRE              +
Sbjct: 76  TSASVLASRFDVSGYPTIKILKKGQAV-DYEGSRTQEEIVAKVREVSQPDWTPPPEVTLV 134

Query: 168 TTTDEAERILTVESKLVLGFLHDLEGMES------EELAAA-SKLHSDVNFYQ---TTSA 217
            T +  + ++     +++ F     G         E+ A   SK    +   +   T   
Sbjct: 135 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET 194

Query: 218 DVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLV 268
           D+A+ F +   S  P L       G+   +     +  I +++        
Sbjct: 195 DLAKRFDV---SGYPTLKIFR--KGRPYDYNGPREKYGIVDYMIEQSGAAA 240

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 99.5 bits (248), Expect = 2e-24
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 4/107 (3%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM---VD 112
           +  + L  +NF E +     ++V FYA WC   KKLAPE+  AAK L   +  +    VD
Sbjct: 130 EVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 189

Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159
           A  E DLAK +++  YPTL +F  G R + + G R +  I  ++ E+
Sbjct: 190 ATAETDLAKRFDVSGYPTLKIFRKG-RPYDYNGPREKYGIVDYMIEQ 235

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score =  123 bits (311), Expect = 1e-34
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM---VD 112
             V+ L   NF+E +  ++ ++V FYA WC   K LAPE+A AA  LK E   +    VD
Sbjct: 7   DHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVD 66

Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQ--FQFFGERTRDVISAWVREK 159
           A  E DLA++Y +  YPT+  F  G      ++   R  D I  W++++
Sbjct: 67  ATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKR 115

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score =  117 bits (294), Expect = 6e-32
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM---VD 112
             V  LN  NF  F+     V++ FYA WC   K+ APE+   A  LK     +    +D
Sbjct: 17  NGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKID 76

Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159
           A     LA ++++  YPT+ +   G     + G RT++ I A VRE 
Sbjct: 77  ATSASMLASKFDVSGYPTIKILKKGQAV-DYDGSRTQEEIVAKVREV 122

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score =  114 bits (286), Expect = 7e-31
 Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 55  AKDVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           + DV+ L   NF  E +  +   +V FYA WC   ++L PE+  AA  LK    +  V+A
Sbjct: 16  SDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNA 75

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQ-FQFFGERTRDVISAWVREKMTLG 163
              + L  +Y +  +PT+ +F A   +   + G RT + I       +  G
Sbjct: 76  DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSG 126

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score =  109 bits (275), Expect = 2e-29
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 55  AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM---V 111
              V++L   NF + + +     + FYA WC   K LAP +   +K        V    V
Sbjct: 4   GSTVLALTENNFDDTIAEG-ITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEV 62

Query: 112 DAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159
           D   E+++  +Y++  YPTL LF  G +  +  G R  D +  +V  +
Sbjct: 63  DCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ 110

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score =  109 bits (273), Expect = 5e-29
 Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 55  AKDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD----LV 109
           + DV+ L   +F +  +      MV FYA WC   K L PE+AAAA  +K +      L 
Sbjct: 6   SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLA 65

Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160
            VDA + + LA  Y I  +PT+ +F  G     + G RTR  I +   +  
Sbjct: 66  AVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLF 116

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score =  106 bits (266), Expect = 4e-28
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 4/106 (3%)

Query: 55  AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEA-DLVMVDA 113
           + +V  +  +N+ E +  +   M+ FYA WC   + L PE+ + A+  +    ++  VD 
Sbjct: 6   SGNVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDV 63

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159
             +  L+  + I A PT+Y    G  + ++ G RT+     ++ +K
Sbjct: 64  TEQPGLSGRFIINALPTIYHCKDGEFR-RYQGPRTKKDFINFISDK 108

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score =  106 bits (265), Expect = 1e-26
 Identities = 34/233 (14%), Positives = 69/233 (29%), Gaps = 29/233 (12%)

Query: 53  LYAK--DVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLV 109
           LY+    +  L         +G      V F+A+WC      AP + A A+ +K     +
Sbjct: 7   LYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPAL 66

Query: 110 M---VDAYLE--KDLAKEYNILAYPTLYLFVAG----VRQFQFFGERTRDVISAWVREKM 160
               +D   E    + +++NI  +PT+  F A                   +   + + +
Sbjct: 67  YLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDAL 126

Query: 161 TLGTYS----------ITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVN 210
                +              +          + +           + E+A     H  V 
Sbjct: 127 ESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREVALDLSQHKGVA 186

Query: 211 FYQ--TTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF-TRLAIANFV 260
             +   T A+V   F +   +  P+   L    G  +       +R     ++
Sbjct: 187 VRRVLNTEANVVRKFGV---TDFPSCYLLF-RNGSVSRVPVLMESRSFYTAYL 235

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  103 bits (257), Expect = 9e-25
 Identities = 49/241 (20%), Positives = 97/241 (40%), Gaps = 14/241 (5%)

Query: 146 ERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKL 205
                 +    +   +    ++     AE ++      V+GF  D+E   +++   A++ 
Sbjct: 1   HHHSSGLEVLFQGPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEA 60

Query: 206 HSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKH 265
             D+ F  T+++DV   + +        ++           F  + T+  + +F+ H + 
Sbjct: 61  IDDIPFGITSNSDVFSKYQLDK----DGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQL 116

Query: 266 PLVVTLTIHNAQFVFQDPRK-QLWLFAP--AYGSDKVILTFEEVAKALKGKVNMLLHVYV 322
           PLV+  T   A  +F    K  + LF P      D  +  F+  A++ KGK+     +++
Sbjct: 117 PLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKIL---FIFI 173

Query: 323 EMNSEGVGRRVSQEFGVSGN---APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDK 379
           + +     +R+ + FG+      A R+I       K    + ELT   I  F   FLE K
Sbjct: 174 DSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGK 232

Query: 380 L 380
           +
Sbjct: 233 I 233

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 89.7 bits (222), Expect = 5e-20
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 3/113 (2%)

Query: 54  YAKDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112
             + V  L GKNF +    + +NV V FYA WC   K+LAP +    +  K   ++V+  
Sbjct: 247 DKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAK 306

Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQF--QFFGERTRDVISAWVREKMTLG 163
                +  +   + ++PTL  F A   +    + GERT D    ++      G
Sbjct: 307 MDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDG 359

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 65.9 bits (160), Expect = 4e-12
 Identities = 64/359 (17%), Positives = 119/359 (33%), Gaps = 49/359 (13%)

Query: 55  AKDVVSLN-GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           ++   +L  G      +  +   ++ F+ +        A +F  AA+ +      +    
Sbjct: 16  SEFATTLPDGAAAESLVESSEVAVIGFFKDVE---SDSAKQFLQAAEAIDD----IPFGI 68

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEA 173
               D+  +Y +     +        +  F GE T++ +  +++    L      T   A
Sbjct: 69  TSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHN-QLPLVIEFTEQTA 127

Query: 174 ERILTVESKLVLGFL-----HDLEGMESEELAAASKLHSDVNFY-----QTTSADVAEFF 223
            +I   E K  +         D +G  S    AA      + F       T +  + EFF
Sbjct: 128 PKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFF 187

Query: 224 HIHPKSK-RPALIFLHLEAGKATPFRHQFTRLAIANFVTH------------------TK 264
            +  +      LI L  E  K  P   + T   I  F                       
Sbjct: 188 GLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWD 247

Query: 265 HPLVVTLTIHNAQFVFQDPRKQLWL--FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVY 321
              V  L   N + V  D +K +++  +AP  G   ++   ++++ +  K   N+   V 
Sbjct: 248 KQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENI---VI 304

Query: 322 VEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVL-NGELTLSSIKSFGEEFLEDK 379
            +M+S        +   V    P +  + A   +  +  NGE TL   K F E   +D 
Sbjct: 305 AKMDST---ANEVEAVKVHSF-PTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDG 359

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 53.5 bits (128), Expect = 5e-08
 Identities = 21/155 (13%), Positives = 53/155 (34%), Gaps = 17/155 (10%)

Query: 14  SIILFKLYLFPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKN 73
            ++LFK +     +   + + E  +  L +   ++  PL     V+    +   +  G  
Sbjct: 84  GVVLFKKF----DEGRNNFEGEVTKENLLDFIKHNQLPL-----VIEFTEQTAPKIFGGE 134

Query: 74  R-NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV--DAYLEKDLAKEYNI--LAY 128
               +++F              F  AA+  KG+   + +  D    + + + + +     
Sbjct: 135 IKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEEC 194

Query: 129 PTLYLFVAGVRQFQFF---GERTRDVISAWVREKM 160
           P + L        ++     E T + I+ +    +
Sbjct: 195 PAVRLITLEEEMTKYKPESEELTAERITEFCHRFL 229

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score = 97.4 bits (243), Expect = 9e-25
 Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 8/113 (7%)

Query: 55  AKDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV-- 111
              VV L  + F    M   ++V V++Y  W   S      +   +     + + +    
Sbjct: 14  PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVA 73

Query: 112 ---DAYLEKDLAKEYNILAYPTLYLFVAGVRQ--FQFFGERTRDVISAWVREK 159
              D     D+ +   +  +PT+  +    +Q  F++ G+R   ++ ++V + 
Sbjct: 74  ARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 57  DVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDA 113
            V  + GK F    M   ++V++ FYA WC   K+L P + +  K  KG+ DLV+  +DA
Sbjct: 8   PVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDA 67

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQF---FGERTRDVISAWVREKMT 161
                   +Y +  +PT+Y   +G ++       G R  + +S ++ E  T
Sbjct: 68  TANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT 118

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score = 97.0 bits (241), Expect = 2e-23
 Identities = 29/181 (16%), Positives = 62/181 (34%), Gaps = 16/181 (8%)

Query: 52  LLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM- 110
           +++ K  + L+   F + + K++ V+V F   + Y  K+   EF   A+      DL++ 
Sbjct: 1   MVHTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVA 58

Query: 111 ------VDAYLEKDLAKEYNILA--YPTLYLFVAGVRQ--FQFFGERTRDVISAWVREKM 160
                     L  +L+++Y +    YP  YLF  G  +    + G      I  W++ + 
Sbjct: 59  EVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQ- 117

Query: 161 TLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVA 220
             G Y                 +    +   + +  +     S +      +      + 
Sbjct: 118 --GVYLGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNLSSVKETQKKWAEQYLKIM 175

Query: 221 E 221
            
Sbjct: 176 G 176

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score =  100 bits (249), Expect = 4e-23
 Identities = 42/307 (13%), Positives = 87/307 (28%), Gaps = 36/307 (11%)

Query: 51  PLLYAKD--VVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD 107
            +LY+    +  L+  +     +G +    V F+A+WC  +   AP +   A  +K    
Sbjct: 5   SVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRP 64

Query: 108 LVMV-----DAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM-- 160
            + +            + +E+NI  +PT+  F A  +                +R ++  
Sbjct: 65  ALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLID 124

Query: 161 -----------TLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSD- 208
                                ++ +   T      L  + + E                 
Sbjct: 125 ALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLSQYHA 184

Query: 209 --VNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHP 266
             V     T +D+   F +   +  P+   L      +       +R    +++      
Sbjct: 185 VAVRRVLNTESDLVNKFGV---TDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGL 241

Query: 267 LVVTLTIHNAQFVFQDPRKQLWLFAP-------AYGSDKVILTFEEVAK--ALKGKVNML 317
                               +W FA           S    +   EV K   L+G+  + 
Sbjct: 242 TRDAPPTTATPVTADKIAPTVWKFADRSKIYMADLESALHYILRVEVGKFSVLEGQRLVA 301

Query: 318 LHVYVEM 324
           L  +V +
Sbjct: 302 LKKFVAV 308

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} Length = 252

 Score = 95.2 bits (236), Expect = 1e-22
 Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 15/227 (6%)

Query: 166 SITTTDEAERILTVESKLVLGFLHDLEGMESEE-LAAASKLHSDVNFYQTTSADVAEFFH 224
            + T +E ++ ++ +   ++GF  D       E L AAS L  +  F  T    +   + 
Sbjct: 10  PLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYD 69

Query: 225 IHPKS---KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQ 281
            + +     RP+ +    E         + T   I  F+      +   +T  N   +  
Sbjct: 70  DNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG 129

Query: 282 DPRKQLWLFA----PAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEF 337
                 +        A GS+        VAK           +   + S         +F
Sbjct: 130 KDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLD---AGHKLNFAVASRKTFSHELSDF 186

Query: 338 GVSGNAPR--VIAYSARDAKKYVLNGE--LTLSSIKSFGEEFLEDKL 380
           G+   A    V+A      +K+V+  E      +++ F +++ +  L
Sbjct: 187 GLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNL 233

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 82.0 bits (203), Expect = 3e-19
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 11/114 (9%)

Query: 56  KDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD-----LV 109
             V  +  KN++E  +   ++V++ FYA WC   K LAP++     +           + 
Sbjct: 7   GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA 66

Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ--FQFFGERTRDVISAWVREKMT 161
            VDA           I  +PT+ L+ AG +     + G RT + +  ++ E   
Sbjct: 67  KVDATAND---VPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} Length = 250

 Score = 85.6 bits (211), Expect = 3e-19
 Identities = 37/222 (16%), Positives = 69/222 (31%), Gaps = 7/222 (3%)

Query: 166 SITTTDEAERILTVESKL-VLGFLHDLEGMESEE-LAAASKLHSDVNFYQTTSADVAEFF 223
            I T  + +  L     + +LG    +      +   AA+ L  D  F+ T S ++A+F 
Sbjct: 10  EILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEIAKFL 69

Query: 224 HIHPKS---KRPALIFLHLEAGKAT-PFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFV 279
            +        +P       E        +      AI ++V     PLV      N    
Sbjct: 70  KVSLGKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKR 129

Query: 280 FQDPRKQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV 339
           +      +  ++  +  D    T     K L+   +   + +   + E     V      
Sbjct: 130 YSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDYATEVKDLGLS 189

Query: 340 SGNAPRVIAYSARDAKKYVLNG-ELTLSSIKSFGEEFLEDKL 380
                   A      KK+ +   E    +++ F   F + KL
Sbjct: 190 ESGGDVNAAILDESGKKFAMEPEEFDSDALREFVMAFKKGKL 231

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 81.6 bits (202), Expect = 4e-19
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 55  AKDVVSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
            +  + L  + F+E + +   + +V FYA WC   +  APEF   A+M+KG+     VD 
Sbjct: 2   PQASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDC 61

Query: 114 YLEKDLAKEYNILAYPTLYLFVAG----VRQFQFFGERTRDVISAWVREKM 160
                  ++  I AYP++ L+           +    R    I+A +  K+
Sbjct: 62  QAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKL 112

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 87.8 bits (216), Expect = 5e-19
 Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 19/231 (8%)

Query: 51  PLLY--AKDVVSLNGKNFSEFMGKNRNV--MVMFYANWCYWSKKLAPEFAAAAKMLKGEA 106
           P L+     VV L+G +FS           +V+FY + C   ++ A  F+  A  LK E 
Sbjct: 16  PGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEH 75

Query: 107 D--------LVMVDAYLEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWV 156
                       V+   E DL ++Y+I   P L+ F      R  +  G  + + ++   
Sbjct: 76  GKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFEN 135

Query: 157 REKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTS 216
                    S       + ++  +S            M  +   +  +L          S
Sbjct: 136 SHLEVDELESEVRRLVNKHMVVDDS-----LKERCIDMHFKLYTSKEELVKRSVSSTDES 190

Query: 217 ADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPL 267
               E   ++      A                +    A+ +FV   K  L
Sbjct: 191 GRFVETTELYATDIAGAFFSAMHYDVSLVGTEPRERLTALEDFVLLVKDSL 241

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 70.9 bits (173), Expect = 4e-14
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 18/173 (10%)

Query: 46  NNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML-KG 104
           ++H    +     V L+  +F + + +    +V F     Y   +    F A +K   K 
Sbjct: 6   HHHHHGSVTCTGCVDLDELSFEKTVERFPYSVVKFDIASPY--GEKHEAFTAFSKSAHKA 63

Query: 105 EADLVM----VDAYLE---KDLAKEYNILA--YPTLYLFVAGVR---QFQFFGERTRDVI 152
             DL++    V  Y E   K L   Y +    +P+++LF        Q     + T D +
Sbjct: 64  TKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNL 123

Query: 153 SAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKL 205
            A+V     L         E   +L            +   +  +  A   +L
Sbjct: 124 KAFVSANTPLYIGRDGCIKEFNEVL---KNYANIPDAEQLKLIEKLQAKQEQL 173

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 23/113 (20%), Positives = 56/113 (49%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           ++++L  + F   +       V FY+  C     LAP +   AK + G   +  V+   +
Sbjct: 98  EIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDD 157

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITT 169
           + L +   + +YP+L++F +G+   ++ G+R+++ + A+  + +      ++T
Sbjct: 158 RMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELST 210

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 65.2 bits (159), Expect = 3e-13
 Identities = 18/105 (17%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM--VDAY 114
           +  S+N     E   +    ++MF  + C +  ++  E +  +K  +G+ ++    ++  
Sbjct: 10  NFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEE 69

Query: 115 LEKDLAKEYNILAYPTLYLFVA-GVRQFQFFGERTRDVISAWVRE 158
              DLA +Y+    PT       G + +   G   ++ I   +  
Sbjct: 70  KNIDLAYKYDANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNS 114

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis} Length = 148

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 24/106 (22%), Positives = 46/106 (43%)

Query: 53  LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112
           L+  +V++   +   + +  +  +++ F+A WC   +  AP FA  A    G+   V V+
Sbjct: 35  LFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVN 94

Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
              E  L+  + I + PT+ L+  G       G   +     W+ E
Sbjct: 95  TEAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDE 140

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A Length = 226

 Score = 61.6 bits (149), Expect = 3e-11
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 10/122 (8%)

Query: 50  WPLLYAKDVVSLNGKNFSE------FMGKNRNVMVMFYANWCYWSKKLAPEFAAAA---- 99
              L     VS    N  +              +++F    C +           A    
Sbjct: 105 AAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENT 164

Query: 100 KMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREK 159
           K  KG+    MV+A    + A +YN++A P + + V G  + +F G     +    +   
Sbjct: 165 KAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSA 224

Query: 160 MT 161
           ++
Sbjct: 225 LS 226

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Length = 133

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 10/119 (8%)

Query: 266 PLVVTLTIHNAQFVFQDPRKQLWLFA-PAYGSDKVILTFEEVAKALKGKVNMLLHVYVEM 324
           PL+  +                ++FA  A    ++    + +A+A +G +N         
Sbjct: 6   PLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGTIDAKAF 65

Query: 325 NSEGVGRRVSQEFGVSG-NAPRVIAYSARDAKKYVL--NGELTLSSIKSFGEEFLEDKL 380
                    +    +     P          +K+      E+T  +IK+F ++F+  K+
Sbjct: 66  G------AHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI 118

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 59.6 bits (144), Expect = 6e-11
 Identities = 12/88 (13%), Positives = 28/88 (31%)

Query: 72  KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131
             + +++ F  +      +L    +  +  L   A + +VD        + ++I   P+ 
Sbjct: 22  AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPST 81

Query: 132 YLFVAGVRQFQFFGERTRDVISAWVREK 159
             F  G      +G           + K
Sbjct: 82  VFFFNGQHMKVDYGSPDHTKFVGSFKTK 109

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 12/151 (7%), Positives = 43/151 (28%), Gaps = 6/151 (3%)

Query: 66  FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD-----LVMVDAYLEKDLA 120
             +   +  ++ +   A  C   +          +++          L +   +  K+  
Sbjct: 15  AQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEET 74

Query: 121 KEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEA-ERILTV 179
           ++Y +   PT+ +        ++ G       +  +     +       +++  E +  V
Sbjct: 75  EKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSEKTLELLQVV 134

Query: 180 ESKLVLGFLHDLEGMESEELAAASKLHSDVN 210
           +  + +              A  +   +  N
Sbjct: 135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAN 165

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 14/145 (9%)

Query: 20  LYLFPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNV-MV 78
           + +             P  LE T L N        ++    L+ K        +  + + 
Sbjct: 85  IVIEGDKDYGIRYIGLPAGLEFTTLINGIFH---VSQRKPQLSEKTLELLQVVDIPIEIW 141

Query: 79  MFYANWCYWSKKLAPEFAAAAKMLKGEADLV---MVDAYLEKDLAKEYNILAYPTLYLFV 135
           +F    C +     P  A  A       D +   ++DA   +DLA+++ ++  P + +  
Sbjct: 142 VFVTTSCGYC----PSAAVMAWDFALANDYITSKVIDASENQDLAEQFQVVGVPKIVI-- 195

Query: 136 AGVRQFQFFGERTRDVISAWVREKM 160
                 +F G +  +    ++    
Sbjct: 196 -NKGVAEFVGAQPENAFLGYIMAVY 219

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} Length = 147

 Score = 57.7 bits (139), Expect = 2e-10
 Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 256 IANFVTHTKHPLVVTLTIHNAQFVFQDPRK-QLWLFAP--AYGSDKVILTFEEVAKALKG 312
             + + H + PLV+  T   A  +F    K  + LF P      D  +  F+  A++ KG
Sbjct: 4   HHHHMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG 63

Query: 313 KVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYS-ARDAKKYVLNG-ELTLSSIKS 370
           K+   L  +++ +     R +          P V   +   +  KY     ELT   I  
Sbjct: 64  KI---LFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITE 120

Query: 371 FGEEFLEDKL 380
           F   FLE K+
Sbjct: 121 FCHRFLEGKI 130

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 27/101 (26%), Positives = 44/101 (43%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
           VV  + K F++ +      +V F+A WC   + ++P     A+   G   +V V+     
Sbjct: 35  VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP 94

Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            LA  Y + + PTL LF  G     + G   R V+   +R 
Sbjct: 95  GLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRP 135

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 72  KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD------LAKEYNI 125
           K + VM+  YA+WC   K+      +  ++ K  AD V++ A +  +      L K  N+
Sbjct: 30  KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV 89

Query: 126 LAYPTLYLFVAG---VRQFQFFGERTRDVISAWVREK 159
           L  PT+  F        Q +  G    +  SA +R++
Sbjct: 90  LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 126

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 56.0 bits (135), Expect = 7e-10
 Identities = 10/113 (8%), Positives = 33/113 (29%), Gaps = 3/113 (2%)

Query: 49  TWPLLYAKDVVSLNGKNFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKG-E 105
            W  L  +    +      +++ +  +  +++                 A   +     +
Sbjct: 10  LWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD 69

Query: 106 ADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
             + + D    + +   +N+  +P   +F  G  +    G      +   +R 
Sbjct: 70  WQVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRS 122

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 58  VVSLNGKNFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
           +V++N  N  + + ++    V+  F++       +L P   + A    G+  L  +D   
Sbjct: 9   IVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDA 68

Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
           E+ +A ++ + A PT+YLF  G     F G +  + I A +
Sbjct: 69  EQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALL 109

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 76  VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
            + +F +  C             A  +    ++  ++       A EY I+A PT+ +  
Sbjct: 5   KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVING 64

Query: 136 AGVRQFQFFGERTRDVISAWVREKM 160
                 +F G  T++ +   +++++
Sbjct: 65  DV----EFIGAPTKEALVEAIKKRL 85

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 17/101 (16%), Positives = 29/101 (28%), Gaps = 1/101 (0%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
           +  +  +          + +V F+ N C   K +             +  +  VD+    
Sbjct: 4   IRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARA-PQVAISSVDSEARP 62

Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
           +L KE      PTL     G     F G      + A    
Sbjct: 63  ELMKELGFERVPTLVFIRDGKVAKVFSGIMNPRELQALYAS 103

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus} Length = 155

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 28/108 (25%), Positives = 47/108 (43%)

Query: 53  LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD 112
           L    V  ++    +     +  ++V F+A WC   +++AP+F AAA  L G+  L  +D
Sbjct: 44  LITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKID 103

Query: 113 AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160
                 +A  + I   P   LF  G    +  G R    +  +VR K+
Sbjct: 104 TQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRGKL 151

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 57  DVVSLNGKNFSEFMGK----NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM-- 110
           D ++    +F E + +    ++ + V  +  WC   K+L+      + +        +  
Sbjct: 7   DGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNL 66

Query: 111 ---VDAYLEKDLAKEYNILAYPTLYLF 134
              ++     +L K+Y + AYPTL   
Sbjct: 67  KMDMEKGEGVELRKKYGVHAYPTLLFI 93

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 15/73 (20%)

Query: 72  KNRNVMVMFYANWCYWSKKLA------PEFAAAAKMLKGEADLVMVDAYLE----KDLAK 121
             R VMV F++  C + +++       P  +   +     A  V+    ++    ++LA+
Sbjct: 18  HGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE-----ARFVVASVSVDTPEGQELAR 72

Query: 122 EYNILAYPTLYLF 134
            Y +   PT    
Sbjct: 73  RYRVPGTPTFVFL 85

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 9/119 (7%)

Query: 47  NHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAP-------EFAAAA 99
                +L    ++ +  + F + +  +   ++  Y+  C    +  P       E     
Sbjct: 7   KEGLAVLEDGRLIYITPEEFRQLLQGD--AILAVYSKTCPHCHRDWPQLIQASKEVDVPI 64

Query: 100 KMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            M    + +   +    +    +  +   PTL  +  G    +  G     +     RE
Sbjct: 65  VMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIVDKLVGATPWSLKVEKARE 123

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 9/97 (9%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 62  NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK 121
             +  + ++ + + V++      C     +  +     +      + + +     +++A 
Sbjct: 7   TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAG 65

Query: 122 EYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            Y +   PT+ LF  G    +     + + +   ++ 
Sbjct: 66  RYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQL 102

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 51.5 bits (123), Expect = 1e-08
 Identities = 13/105 (12%), Positives = 25/105 (23%), Gaps = 4/105 (3%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
           KD+         E + K            C + +K A   +      K     +  +   
Sbjct: 12  KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPS 71

Query: 116 E----KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
           +    +     Y I   P       G    +     +   I  + 
Sbjct: 72  QLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 116

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 73  NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-DLAKEYNILA--YP 129
              +MV+ + +WC   K L P+FA + ++ +   + VMV+   E+    ++++      P
Sbjct: 46  GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIP 105

Query: 130 TLYLF 134
            +   
Sbjct: 106 RILFL 110

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 76  VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
            + +F +  C +          A K    + D+  +D  ++++ A EY ++A P + +  
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN- 62

Query: 136 AGVRQFQFFGERTRDVISAWVREKM 160
                 +F G  +R+ +   + ++M
Sbjct: 63  ---GVVRFVGAPSREELFEAINDEM 84

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 1/123 (0%)

Query: 57  DVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
            ++      +  +     + V+VMFY+  C + K + P F   AK     A    ++   
Sbjct: 7   SIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIAT 66

Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAER 175
               A++Y +   PT   F  G   ++  G+    ++   VR+ +  G   I  +    +
Sbjct: 67  NPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEECIRKSTPVGQ 126

Query: 176 ILT 178
            +T
Sbjct: 127 DIT 129

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} Length = 124

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 10/121 (8%)

Query: 148 TRDVISAWVREKM----TLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS 203
                    +             +T    A   +      V+GF  DLE      L +  
Sbjct: 3   HHHHHMEVEKSSDGPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMV 62

Query: 204 KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKAT---PFRHQFTRLAIANFV 260
           +    V+F  +T ++V   ++I   +     +F  ++  +               ++ F+
Sbjct: 63  QKFPGVSFGISTDSEVLTHYNITGNT---ICLFRLVDNEQLNLEDEDIESIDATKLSRFI 119

Query: 261 T 261
            
Sbjct: 120 E 120

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 65  NFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE 122
           +    + K     V++ F+A WC   K ++P+    +        ++ VD    +D+A E
Sbjct: 10  DLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAME 69

Query: 123 YNILAYPTLYLFVAGVRQFQFFG 145
           YNI + PT      GV+  +F G
Sbjct: 70  YNISSMPTFVFLKNGVKVEEFAG 92

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 55  AKDVVSLNGK-NFSEFMGKNRN----VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLV 109
              V+ ++ K  +   + K +     ++V F A WC   K +AP F   +    G+   +
Sbjct: 1   GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFL 60

Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAG 137
            VD      +A+   I A PT +++  G
Sbjct: 61  KVDVDAVAAVAEAAGITAMPTFHVYKDG 88

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 62  NGKNFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL 119
           N  + ++     +N  +++ F A WC    K+   F            LV +D  +   L
Sbjct: 27  NTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN--YYYVTLVDIDVDIHPKL 84

Query: 120 AKEYNILAYPTLYLFVAGVRQFQFFGE 146
             ++NI A PT   +     ++     
Sbjct: 85  NDQHNIKALPTFEFYFNLNNEWVLVHT 111

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 26/101 (25%), Positives = 46/101 (45%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
            + L  +NF E +  N+ V+V  +A WC       P +   A+  KG+A    ++    +
Sbjct: 6   TLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ 65

Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            +A +Y++L  PT  +FV G       G    D + + V +
Sbjct: 66  KIADKYSVLNIPTTLIFVNGQLVDSLVGAVDEDTLESTVNK 106

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 65  NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN 124
           +F +  G  + ++V F A+WC   K +AP FA  AK        + VD    K +A+E+N
Sbjct: 18  HFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWN 76

Query: 125 ILAYPTLYLFVAGVRQFQFFG 145
           + A PT      G    +  G
Sbjct: 77  VEAMPTFIFLKDGKLVDKTVG 97

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 1/102 (0%)

Query: 58  VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           +  L+   F      + +  +VMF    C+  +K+ P         +       VD   E
Sbjct: 6   LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEE 65

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
           K L + +++   P +  F  G  + +  G+   D +   + +
Sbjct: 66  KTLFQRFSLKGVPQILYFKDGEYKGKMAGDVEDDEVEQMIAD 107

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 8/70 (11%)

Query: 73  NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNIL- 126
           ++  +++F ANWC   + L                  +V   +       +L++ Y    
Sbjct: 29  HKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPI 88

Query: 127 --AYPTLYLF 134
               P + + 
Sbjct: 89  QDGIPAVVVV 98

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 5/92 (5%)

Query: 57  DVVSLNGK-NFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           +++ L    +    + +++N  V+V F+A WC   K +AP F   ++  K +A  V VD 
Sbjct: 14  ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE--KYDAIFVKVDV 71

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG 145
              ++ A++YNI A PT      G +     G
Sbjct: 72  DKLEETARKYNISAMPTFIAIKNGEKVGDVVG 103

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1 Length = 125

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 65  NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN 124
            F   M ++   +  F A WC   K +       A           VDA    ++  +  
Sbjct: 29  QFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCR 87

Query: 125 ILAYPTLYLFVAGVRQFQFFG---ERTRDVISAWVRE 158
           +L  PT  +  +G       G      R  +   +++
Sbjct: 88  VLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIKD 124

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 64  KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY 123
               E     + V++ F A+WC   + +AP FA  AK     A  + VD    K +A+++
Sbjct: 25  MQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQF 83

Query: 124 NILAYPTLYLF 134
           ++ A PT    
Sbjct: 84  SVEAMPTFLFM 94

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A Length = 109

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 25/102 (24%), Positives = 47/102 (46%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
             + +  +NF E +G++  V+V F+A WC   + +AP     AK  +G+  +  +D    
Sbjct: 2   KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDEN 61

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
              A  Y +++ PT+ LF  G       G + +    A + +
Sbjct: 62  PKTAMRYRVMSIPTVILFKDGQPVEVLVGAQPKRNYQAKIEK 103

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1 Length = 112

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 65  NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN 124
            F   + +N  V+V F+A WC   K++AP +   +K    +   + VD     ++ ++ N
Sbjct: 18  EFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKEN 76

Query: 125 ILAYPTLYLFVAGVRQFQFFG 145
           I + PT  ++  G       G
Sbjct: 77  ITSMPTFKVYKNGSSVDTLLG 97

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 47.4 bits (113), Expect = 6e-07
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 64  KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY 123
              ++     + V++ F A+WC   + +AP FA  AK   G A  + VD    K++A++Y
Sbjct: 27  AQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG-AVFLKVDVDELKEVAEKY 85

Query: 124 NILAYPTLYLFVAGVRQFQFFG 145
           N+ A PT      G    +  G
Sbjct: 86  NVEAMPTFLFIKDGAEADKVVG 107

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 58  VVSLNGKNFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADL-VMVDAY 114
           V  +N   F   +    +  V++  +  WC  SK +AP++   A+       L +  +  
Sbjct: 7   VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQE 66

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFG 145
            +  LAKE  I   PT  +        +  G
Sbjct: 67  NK-TLAKELGIRVVPTFKILKENSVVGEVTG 96

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 65  NFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE 122
           +F   +    +   +V F    C    ++AP F++ +     +A  + VD +  +  A  
Sbjct: 11  DFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGTAAT 69

Query: 123 YNILAYPTLYLFVAGVRQFQFFG 145
            NI A PT   F   VR  Q+ G
Sbjct: 70  NNISATPTFQFFRNKVRIDQYQG 92

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 13/110 (11%)

Query: 58  VVSLNGKNFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVM---VD 112
           +   N K   E + +++    +V F+ANW    +  AP +A  +              V 
Sbjct: 9   IKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVG 68

Query: 113 AYLEKDLAKEYNILAY------PTLYLFVAGVRQFQFFGERTRDVISAWV 156
            Y   D++  Y +         PTL LF  G    +      +    +W 
Sbjct: 69  RY--TDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWT 116

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A Length = 104

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 13/107 (12%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAP---EFA---AAAKMLKGEADLVMV 111
           V+ L+ KNF  F+  +   +V F+A WC     LAP   E A         K     +  
Sbjct: 1   VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGK-----LNS 55

Query: 112 DAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
           D     D+A  Y +++ PT+  F  G    +  G   R+ I   ++ 
Sbjct: 56  DE--NPDIAARYGVMSLPTVIFFKDGEPVDEIIGAVPREEIEIRIKN 100

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A Length = 139

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 64  KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY 123
           +  SE     + V+  F A WC  S+++AP +   ++        +++D     D +  +
Sbjct: 37  QKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPS-LMFLVIDVDELSDFSASW 95

Query: 124 NILAYPTLYLFVAGVRQFQFFG 145
            I A PT +    G +  +  G
Sbjct: 96  EIKATPTFFFLRDGQQVDKLVG 117

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 46.6 bits (111), Expect = 7e-07
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 58  VVSLNGKN-FSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY 114
           V  +  K  F E +    ++ V+V F A WC  SK + P F + ++        + VD  
Sbjct: 13  VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVD 71

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFG 145
             +D+A E  + + PT   F  G +  +F G
Sbjct: 72  DCQDVASECEVKSMPTFQFFKKGQKVGEFSG 102

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 57  DVVSLNGKNFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADL-VMVDA 113
            V  +N   F   +    +  V++  +  WC   K +AP++   A+       L +  + 
Sbjct: 19  KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQ 78

Query: 114 YLEKDLAKEYNILAYPTLYLF 134
             +  LAKE  I   PT  + 
Sbjct: 79  ENK-TLAKELGIRVVPTFKIL 98

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 65  NFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE 122
           +  + + +N+   ++V F+A WC   + +AP+  A AK +  E +   VD    ++ A +
Sbjct: 9   DLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAK 67

Query: 123 YNILAYPTLYLFVAGVRQFQFFG 145
           Y++ A PT      G    +F G
Sbjct: 68  YSVTAMPTFVFIKDGKEVDRFSG 90

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 64  KNFSEFMGKNRN----VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL 119
           + F   M   ++    V++ F A+WC   + +AP FA  AK   G A  + VD    KD+
Sbjct: 15  QEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPG-AIFLKVDVDELKDV 73

Query: 120 AKEYNILAYPTLYLFVAGVRQFQFFG 145
           A+ YN+ A PT      G +     G
Sbjct: 74  AEAYNVEAMPTFLFIKDGEKVDSVVG 99

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 36  PDELELTNLNNNHTWPLLYAKD--VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLA 92
            ++  LT LN    + L   K    +  NG N  +    KN  +++ F+A WC      +
Sbjct: 2   TNDDPLTPLNRFDKYYLRMFKKVPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQS 61

Query: 93  PEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI 152
            E     K       L+ VD    + LA+++++ + PT+ L        +     + + +
Sbjct: 62  TEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTMLARKDHFVSSNDL 121

Query: 153 SAWVRE 158
            A +++
Sbjct: 122 IALIKK 127

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 64  KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAA-AAKMLKGEADLVMVDAYLEKDLAKE 122
              +     ++ +++ F+ +W    K L   F A + +        + +DA    ++++ 
Sbjct: 12  TYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISEL 71

Query: 123 YNILAYPTLYLFVAGVRQFQFFG 145
           + I A P   +   G    +  G
Sbjct: 72  FEISAVPYFIIIHKGTILKELSG 94

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A Length = 105

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 22/101 (21%), Positives = 47/101 (46%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
            ++L   NF + +  +  V+V F+A WC   + +AP     A+    +  +  ++     
Sbjct: 2   TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61

Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
           +   ++ I++ PTL LF  G    Q  G + ++ + A + +
Sbjct: 62  ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQLAD 102

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A Length = 114

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 62  NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK 121
           N   F   + +N  +++ FYA WC   K + P      +    +   V  D     D+AK
Sbjct: 19  NLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP-DVRFVKCDVDESPDIAK 77

Query: 122 EYNILAYPTLYLFVAG 137
           E  + A PT  L   G
Sbjct: 78  ECEVTAMPTFVLGKDG 93

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 20/103 (19%), Positives = 45/103 (43%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
           K +      +       ++  +V FYA+WC   K +AP     +K   G+  +  V+   
Sbjct: 34  KKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK 93

Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
           E +LA+++ I + PT++            G  +++ +  ++ +
Sbjct: 94  EPELARDFGIQSIPTIWFVPMKGEPQVNMGALSKEQLKGYIDK 136

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 58  VVSLNGKN-FSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY 114
           V  +  K  F E +    ++ V+V F A WC   K + P F + ++        + VD  
Sbjct: 2   VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVD 60

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFG 145
             +D+A E  + + PT   F  G +  +F G
Sbjct: 61  DCQDVASESEVKSMPTFQFFKKGQKVGEFSG 91

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B Length = 109

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 65  NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN 124
            F   + +++ V+V FYA WC   K +AP     ++    +AD   +D     D+A++  
Sbjct: 16  EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQKNE 74

Query: 125 ILAYPTLYLFVAG 137
           + A PTL LF  G
Sbjct: 75  VSAMPTLLLFKNG 87

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 65  NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAA-AAKMLKGEADLVMVDAYLEKDLAKEY 123
            F +  G ++ V++ F+A WC   K + P F   +      +     VD   +  +A+E 
Sbjct: 25  QFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEV 84

Query: 124 NILAYPTLYLFVAG 137
            I A PT   F  G
Sbjct: 85  GIRAMPTFVFFKNG 98

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A Length = 119

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 1/98 (1%)

Query: 62  NGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA 120
           +G +F    +     V+V F+A WC   K L P          G+  +  VD     DLA
Sbjct: 19  DGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLA 78

Query: 121 KEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            EY + A PT+     G    +F G +  D + A++++
Sbjct: 79  IEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKK 116

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} Length = 151

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 73  NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK-GEADLVMVDAYLEKDLAKEYNILAYPTL 131
            + +MV+ +   C +S+ L   FA   ++ +  +   +M++   E           Y   
Sbjct: 44  KKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPR 103

Query: 132 YLFV--AGVRQFQFFGE 146
            +FV  +   +    G 
Sbjct: 104 IMFVDPSLTVRADIAGR 120

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 59  VSLNGKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
           V    KN  E+  + ++  +V FYA+WC   K +AP     AK   G+  +  VD   E+
Sbjct: 23  VYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQ 82

Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
           +LA  + I + P++       +     G   +      + E
Sbjct: 83  ELAGAFGIRSIPSILFIPMEGKPEMAQGAMPKASFKKAIDE 123

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 64  KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY 123
           +   +       V+V F A+WC   + +AP FA  AK L      + VD    K +A ++
Sbjct: 29  EQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN-VLFLKVDTDELKSVASDW 87

Query: 124 NILAYPTLYLFVAGVRQFQFFG 145
            I A PT      G    +  G
Sbjct: 88  AIQAMPTFMFLKEGKILDKVVG 109

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 13/92 (14%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 57  DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           ++  ++G  +   +    K+  V++  Y +       +    +  A+    E   V    
Sbjct: 11  ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKF-PETKFVKAIV 69

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG 145
                  + Y+    PT++++  G  + +F G
Sbjct: 70  ---NSCIEHYHDNCLPTIFVYKNGQIEGKFIG 98

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C Length = 105

 Score = 43.8 bits (104), Expect = 5e-06
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 57  DVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
           +V  +N  ++    +     VMV F+A WC   K +AP     AK   G+  +  ++   
Sbjct: 1   EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE 60

Query: 116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
              +A +YNI + PT+  F  G R+    G   +  ++  + +
Sbjct: 61  APGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEK 103

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor} Length = 112

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 21/105 (20%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 55  AKDVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           A  +  +   +F  + +  ++ V+V F+A WC   +++AP   A A     + ++V ++ 
Sbjct: 4   AGTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNI 63

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
                 A +Y +++ PTL ++  G       G + +  I   + +
Sbjct: 64  DENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLED 108

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 65  NFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE 122
            F E +       ++V F+A W     ++    A  AK L  +   V ++A    +++++
Sbjct: 22  QFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEK 80

Query: 123 YNILAYPTLYLFVAGVRQFQFFG 145
           Y I + PT   F    +  +  G
Sbjct: 81  YEISSVPTFLFFKNSQKIDRLDG 103

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 55  AKDVVSLNG--KNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV 111
           +  +V  NG  +   +        V+V F+A WC   ++L     + A+    +   + V
Sbjct: 2   SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKV 60

Query: 112 DAYLEKDLAKEYNILAYPTLYLFVAGVRQFQ 142
           D     + A  Y + + P L+       + +
Sbjct: 61  DVDKNGNAADAYGVSSIPALFFVKKEGNEIK 91

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 12/92 (13%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 57  DVVSLNGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           ++  ++G  +   +    ++  V++  Y +       +    +  A+    E   V    
Sbjct: 4   ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKF-PETKFVKAIV 62

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG 145
                  + Y+    PT++++  G  + +F G
Sbjct: 63  ---NSCIQHYHDNCLPTIFVYKNGQIEAKFIG 91

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A Length = 121

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 58  VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
            + +   +F ++ +  N+ V+V F+A WC   K +AP     A     +  +  +D    
Sbjct: 14  TIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTN 73

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            + A+ + +++ PTL LF  G    +  G + +  +   + +
Sbjct: 74  PETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSD 115

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 32/128 (25%)

Query: 61  LNGKNF--SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-------------- 104
           LNG+         K    ++ F++  C+  K+  P+        +               
Sbjct: 17  LNGEVTREQLIGEKP--TLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSED 74

Query: 105 EADLVMVDAYLEK-------------DLAKEYNILAYPTLYLF-VAGVRQFQFFGERTRD 150
           + D   +     +              L   +     P  Y+F   G  +    G     
Sbjct: 75  DLDPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMK 134

Query: 151 VISAWVRE 158
           ++   V  
Sbjct: 135 MLEKRVNR 142

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct} Length = 106

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 58  VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           V+ +  +NF  E +  ++ V+V F+A WC   + +AP     AK  +G+  +V V+    
Sbjct: 3   VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDEN 62

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            + A +Y I + PTL LF  G    +  G + ++ +   + +
Sbjct: 63  PNTAAQYGIRSIPTLLLFKNGQVVDRLVGAQPKEALKERIDK 104

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 26/107 (24%)

Query: 54  YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV-- 111
           Y+ +V+     + +      + V   F A+WC  S+   P+     K    + +  ++  
Sbjct: 9   YSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLI 68

Query: 112 ---------DAYLEKD---------------LAKEYNILAYPTLYLF 134
                      Y  K                L   +++ + PTL   
Sbjct: 69  SWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGV 115

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A 2o85_A 2o89_A 2o87_A Length = 106

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
           +V +   +F   + ++   +V F+A  C   K +AP     A   +G+AD++ +D     
Sbjct: 5   IVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP 63

Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
             A +Y +++ PTL +F  G    +  G + ++ ++  + +
Sbjct: 64  STAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDK 104

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 46/373 (12%), Positives = 80/373 (21%), Gaps = 130/373 (34%)

Query: 1   MEKTKTLLLLLTSSIILFKLYLFPPTQSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVS 60
           +E  + LL  +  +      +          ++AE   L  +    N    LL   +V  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---CLLVLLNV-- 253

Query: 61  LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML-----KGEADLVMVDAYL 115
                                      + K    F  + K+L     K   D +      
Sbjct: 254 --------------------------QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 116 EKDLAKEYNILAYP-TLYLF--VAGVRQFQ--------------FFGERTRDVISAW--- 155
              L      L       L       R                    E  RD ++ W   
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 156 -----------------------VRE------------KMTLGTYSI----TTTDEAERI 176
                                   R+             +     S+        +   +
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407

Query: 177 LT--VESKLVLG-------FLHDLEGMESEELAAASKLHSD-VNFYQTTSA--------- 217
           +    +  LV          +  +      +L     LH   V+ Y              
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 218 --DVAEFFHI--HPKSKRPALIFLHLEAGKATPFRHQFTRLA-IANFVTHTKHPLVVTLT 272
             D   + HI  H K+             + T FR  F     +   + H       + +
Sbjct: 468 YLDQYFYSHIGHHLKNIEH--------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 273 IHNAQFVFQDPRK 285
           I N     Q  + 
Sbjct: 520 ILN---TLQQLKF 529

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 30/107 (28%)

Query: 58  VVSLNGKN--FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV---- 111
           +V  N      +E +     +   F A+WC   +   P  A     L  ++    +    
Sbjct: 9   LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68

Query: 112 --------DAYLEKD----------------LAKEYNILAYPTLYLF 134
                     Y+ +                 +  +Y I   P L + 
Sbjct: 69  SDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIV 115

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1 Length = 115

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 55  AKDVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           +K V+++    F SE +   + V+V F+A+WC   + ++P    AA        +V ++ 
Sbjct: 6   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 65

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
                  K+Y +   P L L           G  ++D + +++  
Sbjct: 66  DPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDT 110

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti} Length = 107

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)

Query: 55  AKDVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           ++  ++++  +F  + +  +  V+V F+A WC   K + P      K   G+  +  V+ 
Sbjct: 1   SEHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNI 60

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
               +    Y + + PTL L   G    +  G   +  + AWV  
Sbjct: 61  DDNPETPNAYQVRSIPTLMLVRDGKVIDKKVGALPKSQLKAWVES 105

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1 Length = 107

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 58  VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
             ++N   F +  +  +  V+V F+A WC   + +AP     A   K +   V ++    
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES 62

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            ++A EY I + PT+ +F  G +     G   +  I   V +
Sbjct: 63  PNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEK 104

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 29/103 (28%)

Query: 60  SLNGKNF--SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV------ 111
           +  G+    S    +NR +++ F+A+WC    +   E     K  K   +  M+      
Sbjct: 18  NEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDI 77

Query: 112 -----DAYLEKD----------------LAKEYNILAYPTLYL 133
                +  ++KD                 AK+Y IL  PT  L
Sbjct: 78  DREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNIL 120

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 15/78 (19%)

Query: 72  KNRNVMVMF-YANWCYWSKKLA------PEFAAAAK----MLK----GEADLVMVDAYLE 116
            ++ + + F  ++WC W  K+        EF   A     M++     +           
Sbjct: 46  DHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKN 105

Query: 117 KDLAKEYNILAYPTLYLF 134
           ++L  +Y +  +P L   
Sbjct: 106 QELKAQYKVTGFPELVFI 123

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 128

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 55  AKDVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           +  ++ L   +F ++ +  +  ++V F+A WC  +K +AP     A   +G+  +  ++ 
Sbjct: 21  SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNI 80

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160
                 A +Y I   PTL LF  G       G  ++  +  ++   +
Sbjct: 81  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 127

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 32/104 (30%)

Query: 60  SLNGKNF--SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---------- 107
           +++G N   S    +    M+ FY   C   +K    FA     ++   +          
Sbjct: 14  TVHGDNSRMSRLKAQY--TMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYP 71

Query: 108 ------------------LVMVDAYLEKDLAKEYNILAYPTLYL 133
                             +V  +   +    + Y+I A PT+YL
Sbjct: 72  DENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYL 115

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 42.7 bits (100), Expect = 1e-04
 Identities = 22/130 (16%), Positives = 33/130 (25%), Gaps = 33/130 (25%)

Query: 60  SLNGKNF--SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG------------- 104
           +   K        GK   V++ F+A  C   ++  P      +  K              
Sbjct: 69  TPGNKPIDLKSLRGKV--VLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEY 126

Query: 105 --EADLVMVDAYLEK-------------DLAKEYNILAYPTLYLF-VAGVRQFQFFGERT 148
             E     V                        Y    +P  YL    G  +   FGE  
Sbjct: 127 AFEKVPGNVAKGAANLGISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGD 186

Query: 149 RDVISAWVRE 158
            +V    VR+
Sbjct: 187 YNVTETLVRQ 196

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 30/105 (28%)

Query: 58  VVSLNGKNF--SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV---- 111
            +             GK   V   F A+WC   +   P+     +      +  ++    
Sbjct: 33  KLRKQADTADMDSLSGKT--VFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASW 90

Query: 112 -------DAYLEK---------------DLAKEYNILAYPTLYLF 134
                  +AY  K                L K+Y++ + PTL   
Sbjct: 91  DEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGL 135

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 12/102 (11%), Positives = 25/102 (24%), Gaps = 30/102 (29%)

Query: 60  SLNGKNF--SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG----------EAD 107
              G      +   K    ++ F+ + C   ++  P+        +           E  
Sbjct: 18  DTTGTYRYLYDVQAKY--TILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERK 75

Query: 108 LVMVDAYLEKD----------------LAKEYNILAYPTLYL 133
                 ++                       Y+I A P LY+
Sbjct: 76  DEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYV 117

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A Length = 112

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 19/86 (22%), Positives = 40/86 (46%)

Query: 76  VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
           V+  F+A WC  SK +AP      + +  +  +V +D    ++ A +Y +++ PTL +  
Sbjct: 20  VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLK 79

Query: 136 AGVRQFQFFGERTRDVISAWVREKMT 161
            G       G + ++ +   V + + 
Sbjct: 80  DGEVVETSVGFKPKEALQELVNKHLL 105

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 32/127 (25%)

Query: 60  SLNGKNF--SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--------EADLV 109
           +L+G  F  +   GK    ++ F+  WC +    AP  +  A              AD+ 
Sbjct: 11  TLSGAPFDGASLQGKP--AVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVG 68

Query: 110 MVDAYLEK-------------DLAKEYNILAYPTLYLF-----VAGVRQFQFFGERTRDV 151
            + +++ K              +   YN+   P    +        V         ++D 
Sbjct: 69  AMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVN--NPTAAMSQDE 126

Query: 152 ISAWVRE 158
           +S  V  
Sbjct: 127 LSGRVAA 133

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ... Length = 108

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 58  VVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           ++ L   +F ++ +  +  ++V F+A WC   K +AP     A   +G+  +  ++    
Sbjct: 4   IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN 63

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
              A +Y I   PTL LF  G       G  ++  +  ++  
Sbjct: 64  PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDA 105

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 32/104 (30%)

Query: 60  SLNGKNF--SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD---------- 107
             +G      +F  +    ++      C+   ++     A+  +    A           
Sbjct: 18  LDSGVKGTLYQFPAEY--TLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYP 75

Query: 108 ------------------LVMVDAYLEKDLAKEYNILAYPTLYL 133
                                 D  L       Y++ A PTLYL
Sbjct: 76  DEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTLYL 119

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A* Length = 116

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 9/107 (8%)

Query: 61  LNGKNFSEFMGKN-----RNVMVMFYANWCYWSKKLAPEFAAA-AKMLKG-EADLVMVD- 112
           + G +     G +        ++MF    C +  +   E A       +G  A +  +  
Sbjct: 1   MRGSHHHHHHGSDDDDKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQM 60

Query: 113 -AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
              L   L     +   PT  L    V   +  G    D     +  
Sbjct: 61  RDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYPGEDFFWPMLAR 107

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 30/106 (28%)

Query: 57  DVVSLNGKNF--SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV--- 111
           + +             GK   V   F A+WC  ++   P+            +  +V   
Sbjct: 12  EKLRRGDGEVEVKSLAGKL--VFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCT 69

Query: 112 --------DAYLEK---------------DLAKEYNILAYPTLYLF 134
                     Y  K                L+K +N+ + PTL   
Sbjct: 70  WDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGV 115

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 2/75 (2%)

Query: 71  GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT 130
            K   ++V  Y +       L       A           + A         ++    PT
Sbjct: 131 QKITTIVVHIYEDGIKGCDALNSSLICLAAEY-PMVKFCKIKA-SNTGAGDRFSSDVLPT 188

Query: 131 LYLFVAGVRQFQFFG 145
           L ++  G     F  
Sbjct: 189 LLVYKGGELLSNFIS 203

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	100.0
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	100.0
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	100.0
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	100.0
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	100.0
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	100.0
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.97
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.97
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.97
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.95
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.94
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.92
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.92
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.91
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.91
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.91
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.91
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.9
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.9
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.89
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.89
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.89
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.89
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.89
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.88
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.88
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.88
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.88
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.88
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.88
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.88
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.87
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.87
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.87
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.87
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.87
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.87
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.87
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.87
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.87
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.87
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.87
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.86
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.86
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.86
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.86
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.86
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.86
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.86
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.86
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.86
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.86
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.86
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.85
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.85
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.85
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.85
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.85
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.85
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.85
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.85
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.85
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.85
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.85
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.85
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.85
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.84
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.84
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.84
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.84
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.84
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.84
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.84
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	99.84
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.84
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.84
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.83
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.83
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.83
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.83
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.83
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.83
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.82
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.82
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.82
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.82
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.82
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.81
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.81
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.81
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.81
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.81
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.8
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.8
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.8
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.79
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.78
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.77
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.77
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.63
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.76
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.75
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.74
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.73
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.73
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.73
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.73
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.73
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.73
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.72
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.72
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.72
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.71
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.71
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.71
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.71
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.7
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.7
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.69
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.52
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.68
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.68
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.68
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.68
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.68
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.68
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.67
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.67
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.67
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.66
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.66
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.66
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.65
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.65
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.65
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.65
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.64
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.64
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.63
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.63
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.63
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.63
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.62
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.62
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.62
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.62
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.62
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.62
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.62
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.61
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.61
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.61
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.6
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.6
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.59
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.58
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.56
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.56
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.56
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.56
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.55
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.54
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.54
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.53
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.53
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.53
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.52
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.51
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.51
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.5
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.49
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.49
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.48
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.48
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.48
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.47
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.46
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.46
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.46
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.19
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.44
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.44
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.42
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.42
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.41
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.41
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.4
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.4
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.4
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.1
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.39
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.39
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.39
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.38
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.37
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.35
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.34
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.33
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.33
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.3
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.29
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.29
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.29
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.29
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.29
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.28
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.28
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	99.28
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.27
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.26
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.25
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.24
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.24
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.23
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.23
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.21
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.18
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.18
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.18
3me7_A	170	Putative uncharacterized protein; electron transfe	99.17
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.16
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.16
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.14
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.12
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.11
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	99.09
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.09
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.07
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.06
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.06
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.05
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.04
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.04
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.01
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.99
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.99
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	98.99
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.98
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.97
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.97
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.96
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.87
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.87
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.87
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.86
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.86
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.86
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.83
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.81
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.79
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.79
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.79
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.74
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.72
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.7
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	98.67
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.62
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.59
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.51
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.51
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.49
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.48
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.48
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	98.46
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.45
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	98.44
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.42
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.41
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.4
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.38
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.38
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	98.38
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.38
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.37
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	98.36
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.35
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.35
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	98.35
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.35
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.35
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.34
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.34
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	98.34
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.34
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	98.34
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.33
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.32
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.32
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.31
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.31
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.31
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.31
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.31
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.3
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	98.29
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.28
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.28
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.27
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.27
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	98.27
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.26
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.25
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.25
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.25
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	98.24
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.24
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.24
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.23
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.22
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.22
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.22
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.22
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.22
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.21
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	98.21
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.21
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.2
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.18
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.18
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	98.18
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.17
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.17
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.16
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.16
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.15
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.15
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.15
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.14
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.13
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.13
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.13
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.12
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.12
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	98.12
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.11
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.09
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.08
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.08
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	98.07
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.05
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	98.05
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.04
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.04
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	98.03
2l57_A	126	Uncharacterized protein; structural genomics, unkn	98.0
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	97.95
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	97.93
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.93
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.92
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.91
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	97.91
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	97.9
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	97.88
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	97.88
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	97.87
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	97.86
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	97.86
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	97.85
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	97.84
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.81
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	97.81
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	97.74
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	97.72
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	97.68
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.67
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	96.82
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	97.64
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	97.61
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	97.57
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	97.54
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	97.54
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	97.53
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.5
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	97.49
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.44
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	97.4
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	97.36
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.35
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	97.35
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.28
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	97.27
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	97.23
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	97.19
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	97.07
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	97.01
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	96.93
3raz_A	151	Thioredoxin-related protein; structural genomics,	96.92
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	96.84
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	95.88
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	96.81
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	96.74
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	96.71
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	96.71
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	96.7
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	96.68
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	96.65
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	96.64
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	96.61
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	96.6
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	96.56
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	96.56
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	96.49
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	96.48
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	96.46
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	96.39
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	96.36
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	96.29
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	96.26
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	96.22
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	96.21
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	96.13
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	96.06
4evm_A	138	Thioredoxin family protein; structural genomics, n	96.06
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	95.99
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	95.94
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	95.89
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	95.85
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	95.85
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	95.83
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	95.71
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	95.68
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	95.58
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	95.38
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	95.24
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	95.19
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	95.16
1t4y_A	105	Adaptive-response sensory-kinase SASA; alpha/beta	95.11
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	94.95
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	94.87
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	94.66
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	94.57
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	94.45
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	94.29
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	94.26
3ira_A	173	Conserved protein; methanosarcina mazei,structural	94.19
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	94.1
1ttz_A	87	Conserved hypothetical protein; structural genomic	94.05
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	93.75
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	93.68
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	93.53
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	93.34
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	93.2
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	93.2
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	92.95
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	92.72
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	92.68
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	92.46
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	92.35
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	92.29
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	92.24
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	92.07
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	91.94
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	91.74
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	91.53
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	91.51
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	90.96
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	90.8
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	90.68
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	90.32
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	90.23
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	90.15
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	90.08
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	89.97
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	89.78
2lrt_A	152	Uncharacterized protein; structural genomics, thio	89.65
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	89.63
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	88.95
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	88.7
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	88.59
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	87.74
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	87.43
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	87.25
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	86.76
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	86.51
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	86.06
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	85.37
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	85.28
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	84.96
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	84.72
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	83.82
3kgk_A	110	Arsenical resistance operon trans-acting represso;	83.24
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	82.92
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	82.53
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	81.67
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	81.01
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	81.0
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	80.51
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	80.46
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	80.88

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=100.00  E-value=1.4e-48  Score=379.60  Aligned_cols=340  Identities=21%  Similarity=0.335  Sum_probs=301.1

Q ss_pred             CcEEcChhhHHHHHcCC---CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           57 DVVSLNGKNFSEFMGKN---RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      .+..|+.++|+..+.++   ++++|+|||+||++|+++.|.|+++++.+++.+.++.|||++++++|++|+|+++||+++
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~   81 (481)
T 3f8u_A            2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKI   81 (481)
T ss_dssp             CCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEE
T ss_pred             ceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEE
Confidence            57889999999999777   999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEE
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFY  212 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~  212 (408)
                      |++|+.+.+|.|.++.+.|.+|+.+.+++++..+.+.++++.+++.++.++|+||.++++.....|..+| .+++++.|+
T Consensus        82 ~~~g~~~~~~~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~f~~~a~~~~~~~~F~  161 (481)
T 3f8u_A           82 FRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFA  161 (481)
T ss_dssp             EETTEEEEECCSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSSCEEEEEESCTTCHHHHHHHHHHHHHTTTSCEE
T ss_pred             EeCCceeeeecCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCCcEEEEEECCCccchHHHHHHHHHHhccCceEE
Confidence            9999888999999999999999999999999999999999999999999999999988899999999988 788999999


Q ss_pred             EecCHhHHhhcCCCCCCCCCeEEEee------cCCCcccccC-CcCCHHHHHHHHhcCCCCceEeeccccccccccCCcc
Q 015368          213 QTTSADVAEFFHIHPKSKRPALIFLH------LEAGKATPFR-HQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRK  285 (408)
Q Consensus       213 ~~~~~~l~~~~~i~~~~~~p~l~~~~------~~~~~~~~y~-g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~  285 (408)
                      .+.+.+++++++++.    +.+++|+      ..++.+..|+ |.++.++|.+||..++.|+++++|.+|+..++..  +
T Consensus       162 ~~~~~~~~~~~~v~~----~~i~~~~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~~n~~~~~~~--~  235 (481)
T 3f8u_A          162 HTNVESLVNEYDDNG----EGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGK--D  235 (481)
T ss_dssp             EECCHHHHHHHCSSS----EEEEEECCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTTTSCEECTTTHHHHTTS--S
T ss_pred             EECCHHHHHHhCCCC----CcEEEEecccccCccCCcccccCCCCCCHHHHHHHHHHhCCCCccccChhHHHHhcCC--C
Confidence            999999999999984    5688888      4455778998 7899999999999999999999999999998865  4


Q ss_pred             EEEEEeeCC--Cc----hHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCC--CCCCcEEEEEccCCccc
Q 015368          286 QLWLFAPAY--GS----DKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVS--GNAPRVIAYSARDAKKY  357 (408)
Q Consensus       286 ~~i~f~~~~--~~----~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~--~~~~p~i~i~~~~~~~y  357 (408)
                      ++++|...+  ..    +.+...++++|++++++.+.+.|+++|+...   .+.++.||++  ....|.+++.+.++++|
T Consensus       236 ~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~---~~~l~~~gl~~~~~~~P~~~i~~~~~~ky  312 (481)
T 3f8u_A          236 LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTF---SHELSDFGLESTAGEIPVVAIRTAKGEKF  312 (481)
T ss_dssp             EEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTT---HHHHGGGTCCCCTTCSCEEEEECSSSCEE
T ss_pred             ceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHHH---HHHHHHcCCCcccCCCcEEEEEcCCCccc
Confidence            455554432  22    2257789999999987544599999997753   3567899998  34689999998778899


Q ss_pred             cCCCCCChH--HHHHHHHHHhcCcc--ccccccCchh----hhcCccCCccceeee
Q 015368          358 VLNGELTLS--SIKSFGEEFLEDKL--LNQSDQISET----ILKLPSQSRASYQLR  405 (408)
Q Consensus       358 ~~~~~~~~~--~i~~Fi~~~~~gk~--~~kse~iP~~----~~~~~~~~~~~~~~~  405 (408)
                      .|+++++.+  .|.+|++++++|++  +.+|+++|+.    +..+++++|++.+..
T Consensus       313 ~~~~~~t~e~~~l~~f~~~~~~g~~~~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~  368 (481)
T 3f8u_A          313 VMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNN  368 (481)
T ss_dssp             ECCSCCCTTSHHHHHHHHHHHHTCCCCCCCCCCCCSCCCSSSEEECTTTHHHHHTC
T ss_pred             CCCcccCccHHHHHHHHHHHhcCCcccccccCCCCCCCCCCeEEecccCHHHHhhc
Confidence            999999999  99999999999999  8999999965    777888888877654

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=100.00  E-value=4.8e-48  Score=361.17  Aligned_cols=315  Identities=14%  Similarity=0.208  Sum_probs=278.5

Q ss_pred             cCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhh------HHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCC
Q 015368           54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLA------PEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL  126 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~------p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~  126 (408)
                      ..+.+..|+.++|+..+.++++++|+||||||+||+...      |.++++++.+++ ++.+++|||++++++|++|+|+
T Consensus        11 ~~~~v~~lt~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~   90 (367)
T 3us3_A           11 GVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT   90 (367)
T ss_dssp             CCCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCC
T ss_pred             CCCccEECCHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCC
Confidence            345799999999999998899999999999999974433      789999999987 6999999999999999999999


Q ss_pred             cCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhc-cCCeEEEEEecCCCCcCHHHHHHHh-c
Q 015368          127 AYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-K  204 (408)
Q Consensus       127 ~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~~~~~~~a-~  204 (408)
                      ++||+++|++|+. ..|.|.++.+.|.+|+.+.+++++..+.+.++++.++. .++.++|+||.+++++.++.|..+| .
T Consensus        91 ~~PTl~~f~~G~~-~~y~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~A~~  169 (367)
T 3us3_A           91 EEDSIYVFKEDEV-IEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEE  169 (367)
T ss_dssp             STTEEEEEETTEE-EECCSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTCHHHHHHHHHHHH
T ss_pred             cCceEEEEECCcE-EEeCCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECCCCchHHHHHHHHHHh
Confidence            9999999999954 69999999999999999999999999999999999998 6788999999999999999999988 6


Q ss_pred             cCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCc-CCHHHHHHHHhcCCCCceEeeccccccccccCC
Q 015368          205 LHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP  283 (408)
Q Consensus       205 ~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~  283 (408)
                      +++++.|+.+.+..++++++++    .|+|++|+..++.+..|+|. ++.++|.+||..++.|++.++|.+++..++..+
T Consensus       170 ~~~~~~F~~~~~~~~~~~~~v~----~p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~  245 (367)
T 3us3_A          170 FHPYIPFFATFDSKVAKKLTLK----LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDD  245 (367)
T ss_dssp             HTTTSCEEEECCHHHHHHHTCC----TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTCSCSEEECCGGGHHHHHHSC
T ss_pred             hcCCcEEEEECCHHHHHHcCCC----CCeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCccceeecChhhHHHHHhhc
Confidence            8889999999999999999998    39999999877788999995 899999999999999999999999988877653


Q ss_pred             --ccEEEEEeeCCC--chHHHHHHHHHHHHhcC--CcceEEEEEEEcCCcccccch----hhhccCCCCCCcEEEEEcc-
Q 015368          284 --RKQLWLFAPAYG--SDKVILTFEEVAKALKG--KVNMLLHVYVEMNSEGVGRRV----SQEFGVSGNAPRVIAYSAR-  352 (408)
Q Consensus       284 --~~~~i~f~~~~~--~~~~~~~~~~vA~~~~~--~~~~i~f~~vd~~~~~~~~~l----~~~~~i~~~~~p~i~i~~~-  352 (408)
                        .+++++|.+..+  .+++...++++|+++++  +   +.|+|+|+....   +.    .+.||++ ...|++++.+. 
T Consensus       246 ~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~k---i~F~~id~~~~~---~~l~~~~~~fgl~-~~~P~~~i~~~~  318 (367)
T 3us3_A          246 MDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPD---LSIIWIDPDDFP---LLVPYWEKTFDID-LSAPQIGVVNVT  318 (367)
T ss_dssp             BTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTT---CCEEEECGGGCT---TTHHHHHHHHTCC-TTSCEEEEEETT
T ss_pred             cCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCc---eEEEEECCccch---hHHHHHHHhcCCC-CCCCeEEEEecc
Confidence              256777877544  57888899999999998  7   999999987642   33    3459997 45899999987 


Q ss_pred             CC--ccccCCC---CCChHHHHHHHHHHhcCcc
Q 015368          353 DA--KKYVLNG---ELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       353 ~~--~~y~~~~---~~~~~~i~~Fi~~~~~gk~  380 (408)
                      ++  ++|.+.+   .++.++|.+|++++++|++
T Consensus       319 ~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~Gkl  351 (367)
T 3us3_A          319 DADSVWMEMDDEEDLPSAEELEDWLEDVLEGEI  351 (367)
T ss_dssp             TCCEEECCCCTTSCCCCHHHHHHHHHHHHHTSS
T ss_pred             cccceeecCCcccccCCHHHHHHHHHHHHcCCc
Confidence            44  5777764   7999999999999999999

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.1e-48  Score=368.19  Aligned_cols=321  Identities=20%  Similarity=0.291  Sum_probs=251.2

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhc------CCcEEEEEeCcccHhHHHHcCCCcCc
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK------GEADLVMVDAYLEKDLAKEYNILAYP  129 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~------~~v~~~~v~~~~~~~~~~~~~i~~~P  129 (408)
                      +.+..|++++|+..+.++++++|+|||+||+||+++.|.|+++++.++      +++.++.|||++++++|++|+|+++|
T Consensus         5 ~~v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~P   84 (382)
T 2r2j_A            5 SEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYP   84 (382)
T ss_dssp             ---CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEES
T ss_pred             CceEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCC
Confidence            468889999999988889999999999999999999999999999984      36999999999999999999999999


Q ss_pred             EEEEEeCCeEeE-EeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCC
Q 015368          130 TLYLFVAGVRQF-QFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHS  207 (408)
Q Consensus       130 t~~~~~~g~~~~-~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~  207 (408)
                      |+++|++|+.+. .|.|.++.+.|.+|+.+.+++++..+.+.++++. +..++.++|+||.+.+.+.++.|..+| .+++
T Consensus        85 t~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~~~~~~~~~f~~~A~~~~~  163 (382)
T 2r2j_A           85 TLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSKRNIIGYFEQKDSDNYRVFERVANILHD  163 (382)
T ss_dssp             EEEEEETTEEEEEECCSCCSHHHHHHHHHHHHSCCCEEC-------------CCEEEEEESCSSSHHHHHHHHHHHHHTT
T ss_pred             EEEEEeCCcEeeeeecCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCCCEEEEEECCCCChhHHHHHHHHHHhhc
Confidence            999999997766 5999999999999999999999999988888888 677788899999988888888899888 6888


Q ss_pred             ceeEEEecCHhHHhhcCCCCCCCCCeEEEeecC--CCcccccCCcC-CHHHHHHHHhcCCCCceEeeccccccccccCCc
Q 015368          208 DVNFYQTTSADVAEFFHIHPKSKRPALIFLHLE--AGKATPFRHQF-TRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPR  284 (408)
Q Consensus       208 ~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~--~~~~~~y~g~~-~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~  284 (408)
                      ++.|+.+.+ ++.+.++++   +.| + +|+..  ......|+|.+ +.++|.+||..++.|++.++|.+++..++..+.
T Consensus       164 ~~~F~~~~~-~~~~~~~v~---~~p-i-~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~~  237 (382)
T 2r2j_A          164 DCAFLSAFG-DVSKPERYS---GDN-I-IYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGL  237 (382)
T ss_dssp             TCEEEEEES-CC-----------CE-E-EEECSSSSSCCEECCSCTTCHHHHHHHHHHHHSCSSEECCHHHHHHHHTTCC
T ss_pred             cceEEEEeh-hhHHhhCCC---CCc-e-EECCCCCCCcCcccCCCCCCHHHHHHHHHhcccCceEecChhhHHHHhcCCC
Confidence            999998877 678888887   467 4 45554  23568899998 889999999999999999999999999998888


Q ss_pred             cEEEEEeeCCC---chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccC--
Q 015368          285 KQLWLFAPAYG---SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVL--  359 (408)
Q Consensus       285 ~~~i~f~~~~~---~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~--  359 (408)
                      +++++|....+   .+.+...+.++|.+++++   +.|+|+|+...   .++++.||++....|++++.+. ++.|.|  
T Consensus       238 ~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~---i~f~~id~~~~---~~~~~~~gl~~~~~P~i~i~~~-~~~y~~~~  310 (382)
T 2r2j_A          238 PFLILFHMKEDTESLEIFQNEVARQLISEKGT---INFLHADCDKF---RHPLLHIQKTPADCPVIAIDSF-RHMYVFGD  310 (382)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHHHTGGGTTT---SEEEEEETTTT---HHHHHHTTCCGGGCSEEEEECS-SCEEECCC
T ss_pred             cEEEEEecCCchHHHHHHHHHHHHHHHHhCCe---eEEEEEchHHh---HHHHHHcCCCccCCCEEEEEcc-hhcCCCCc
Confidence            88888876544   334555666777788888   99999998753   3678999998767899999875 334544  


Q ss_pred             -CCCCChHHHHHHHHHHhcCcc--ccccccCchh
Q 015368          360 -NGELTLSSIKSFGEEFLEDKL--LNQSDQISET  390 (408)
Q Consensus       360 -~~~~~~~~i~~Fi~~~~~gk~--~~kse~iP~~  390 (408)
                       ++.++.+.|.+|++++++|++  ++||||+|++
T Consensus       311 ~~~~~~~~~i~~F~~d~~~Gkl~p~~kse~~P~~  344 (382)
T 2r2j_A          311 FKDVLIPGKLKQFVFDLHSGKLHREFHHGPDPTD  344 (382)
T ss_dssp             SGGGGSTTHHHHHHHHHHHTTTSSCC--------
T ss_pred             cccccCHHHHHHHHHHHHCCCccccccCCCCCCC
Confidence             345678999999999999999  9999999987

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=100.00  E-value=5.1e-47  Score=353.00  Aligned_cols=313  Identities=19%  Similarity=0.245  Sum_probs=277.5

Q ss_pred             CCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHH-------HHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCC
Q 015368           55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-------FAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL  126 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~-------~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~  126 (408)
                      .+.+..|+.++|+..+.++++++|+||||||+ |+.++|.       |+++++.+++ ++.++.|||++++++|++|+|+
T Consensus        10 ~~~v~~l~~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~   88 (350)
T 1sji_A           10 KDRVVSLTEKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFD   88 (350)
T ss_dssp             CCCCEEECHHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCC
T ss_pred             CCccEECCHHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCC
Confidence            35689999999999998899999999999999 9999999       9999999987 6999999999999999999999


Q ss_pred             cCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhc-cCCeEEEEEecCCCCcCHHHHHHHh-c
Q 015368          127 AYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-K  204 (408)
Q Consensus       127 ~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~~~~~~~a-~  204 (408)
                      ++||+++|++|+ +.+|.|.++.+.|.+|+.+.+++++..+.+.++++.++. .++.++|+||.+++++.++.|..+| .
T Consensus        89 ~~Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~~~~~A~~  167 (350)
T 1sji_A           89 EEGSLYVLKGDR-TIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEH  167 (350)
T ss_dssp             STTEEEEEETTE-EEEECSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTSHHHHHHHHHHHH
T ss_pred             ccceEEEEECCc-EEEecCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCCCcHHHHHHHHHHHh
Confidence            999999999996 679999999999999999999999999999999999998 7788999999998888899999988 6


Q ss_pred             cCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCc-CCHHHHHHHHhcCCCCceEeeccccccccccCC
Q 015368          205 LHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-FTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP  283 (408)
Q Consensus       205 ~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~-~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~  283 (408)
                      +++++.|+.+.+.+++++++++    .|++++|+..++.+..|+|. ++.++|.+||..++.|++.++|.+++..+++.+
T Consensus       168 ~~~~~~f~~~~~~~~~~~~~v~----~p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt~~~~~~~~~~~  243 (350)
T 1sji_A          168 FQPYIKFFATFDKGVAKKLSLK----MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDD  243 (350)
T ss_dssp             TTTTSEEEEECCHHHHHHHTCC----TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHHCCCSEEECCTTTHHHHHHSC
T ss_pred             hccCcEEEEECCHHHHHHcCCC----CCcEEEEeCCCCCceecCCCCCCHHHHHHHHHHcCccchhhcChhhHHHHhcCC
Confidence            7799999999999999999997    69999999877788899997 899999999999999999999999999998865


Q ss_pred             c-c-EEEEEeeCCC--chHHHHHHHHHHHHhcC--CcceEEEEEEEcCCcccccchh----hhccCCCCCCcEEEEEcc-
Q 015368          284 R-K-QLWLFAPAYG--SDKVILTFEEVAKALKG--KVNMLLHVYVEMNSEGVGRRVS----QEFGVSGNAPRVIAYSAR-  352 (408)
Q Consensus       284 ~-~-~~i~f~~~~~--~~~~~~~~~~vA~~~~~--~~~~i~f~~vd~~~~~~~~~l~----~~~~i~~~~~p~i~i~~~-  352 (408)
                      . + .+++|....+  +.++...++++|+++++  +   +.|+|+|+...   ..++    +.||++. ..|++++++. 
T Consensus       244 ~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~---~~f~~id~~~~---~~~~~~~~~~~gi~~-~~P~~~i~~~~  316 (350)
T 1sji_A          244 LNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPD---LSIVWIDPDDF---PLLVAYWEKTFKIDL-FKPQIGVVNVT  316 (350)
T ss_dssp             SSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSS---CCEEEECGGGC---HHHHHHHHHHCCSCT-TSCEEEEEESS
T ss_pred             CCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCc---eEEEEECchhh---HHHHHHHHhhcCCCc-cCCcEEEEecc
Confidence            4 3 3444655433  46889999999999986  7   99999998753   3556    7899973 4699999987 


Q ss_pred             CCcccc--CC---CCCChHHHHHHHHHHhcCcc
Q 015368          353 DAKKYV--LN---GELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       353 ~~~~y~--~~---~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      ++.+|.  +.   +.++.++|.+|++++++|++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~Gkl  349 (350)
T 1sji_A          317 DADSVWMEIPDDDDLPTAEELEDWIEDVLSGKI  349 (350)
T ss_dssp             SSCEEESCSSCCSCCCCHHHHHHHHHHHHTSCC
T ss_pred             cccccccCCCcccccCCHHHHHHHHHHHhcCcc
Confidence            555665  43   48999999999999999986

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=100.00  E-value=1.5e-45  Score=359.93  Aligned_cols=332  Identities=19%  Similarity=0.267  Sum_probs=292.7

Q ss_pred             cCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      ..+.+..|+.++|+..+.++++++|+||||||+||+++.|.|+++++.+++ ++.++.|||++++++|++|+|+++||++
T Consensus        12 ~~~~v~~l~~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   91 (504)
T 2b5e_A           12 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLK   91 (504)
T ss_dssp             TTSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCCCcEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEE
Confidence            346799999999999998899999999999999999999999999999988 5999999999999999999999999999


Q ss_pred             EEeCCeE--eEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCC--eEEEEEecCCCCcCHHHHHHHh-ccCC
Q 015368          133 LFVAGVR--QFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVES--KLVLGFLHDLEGMESEELAAAS-KLHS  207 (408)
Q Consensus       133 ~~~~g~~--~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~--~~vi~f~~~~~~~~~~~~~~~a-~~~~  207 (408)
                      +|++|+.  +.+|.|.++.+.|.+|+.+.+++++..+++   ++.+++..+  ..+|+||.+.++.....|..+| .+++
T Consensus        92 ~~~~g~~~~~~~~~G~~~~~~l~~~l~~~~~~~v~~i~~---~~~~~~~~~~~~~~v~~f~~~~~~~~~~f~~~A~~~~~  168 (504)
T 2b5e_A           92 IFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVAD---LPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFN  168 (504)
T ss_dssp             EEETTCTTCEEECCSCCSHHHHHHHHHHHTSCSEEECSC---HHHHHHHSCCSSCEEEEEESCCHHHHHHHHHHHHHTTT
T ss_pred             EEeCCccccceeecCCCCHHHHHHHHHHhcCCcceeHHH---HHHHHhcCCCceEEEEEeCCCCchHHHHHHHHHHHhhc
Confidence            9999976  889999999999999999999999999987   888887777  8888899887777888899888 7889


Q ss_pred             ceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCc-C---CHHHHHHHHhcCCCCceEeeccccccccccCC
Q 015368          208 DVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQ-F---TRLAIANFVTHTKHPLVVTLTIHNAQFVFQDP  283 (408)
Q Consensus       208 ~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~-~---~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~  283 (408)
                      ++.|+.+.  +++++++++       +++|+..+ .+..|+|+ +   +.++|.+||..++.|++.++|.+++..++..+
T Consensus       169 ~~~F~~~~--~~~~~~~~~-------i~l~~~~~-~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t~~~~~~~~~~~  238 (504)
T 2b5e_A          169 DYDFVSAE--NADDDFKLS-------IYLPSAMD-EPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESG  238 (504)
T ss_dssp             TCEEEEEE--CTTSCCEEE-------EEETTEEE-EEEECCSCHHHHTSHHHHHHHHHHHSSCSSCBCCHHHHHHHHHTT
T ss_pred             CcEEEEEH--HHHHhcCCe-------EEecCCCC-cccccCCcccccCCHHHHHHHHHhcccCCcccCCHhHHHHHhcCC
Confidence            99999887  566666652       77787755 77889998 7   88999999999999999999999999999988


Q ss_pred             ccEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCccccCC-
Q 015368          284 RKQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLN-  360 (408)
Q Consensus       284 ~~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~y~~~-  360 (408)
                      .++++++....+ .+.+...++++|++++++   +.|+|+|+...   .++++.||+ ....|++++++. ++.+|.+. 
T Consensus       239 ~~~~~l~~~~~~~~~~~~~~l~~~a~~~~~~---i~F~~id~~~~---~~~~~~~gl-~~~~P~v~i~~~~~~~ky~~~~  311 (504)
T 2b5e_A          239 LPLGYLFYNDEEELEEYKPLFTELAKKNRGL---MNFVSIDARKF---GRHAGNLNM-KEQFPLFAIHDMTEDLKYGLPQ  311 (504)
T ss_dssp             SCEEEEEESSHHHHHHHHHHHHHHHHHTTTT---CEEEEEEHHHH---TTHHHHTTC-CSCSSEEEEEETTTTEEEECCC
T ss_pred             CcEEEEEecCcccHHHHHHHHHHHHHhcCCe---eEEEEEehhhh---HHHHHHcCC-cccCCEEEEEeCCcCcccCCCC
Confidence            888877765422 467888999999999999   99999998753   478899999 667899999988 77788886 


Q ss_pred             -CC-----------CChHHHHHHHHHHhcCcc--ccccccCchh----hhcCccCCccceeee
Q 015368          361 -GE-----------LTLSSIKSFGEEFLEDKL--LNQSDQISET----ILKLPSQSRASYQLR  405 (408)
Q Consensus       361 -~~-----------~~~~~i~~Fi~~~~~gk~--~~kse~iP~~----~~~~~~~~~~~~~~~  405 (408)
                       ++           ++.+.|.+|+.+++.|++  +.+|+++|+.    +..+.++||++.+++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~~~p~~~s~~~p~~~~~~v~~l~~~~f~~~v~~  374 (504)
T 2b5e_A          312 LSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVND  374 (504)
T ss_dssp             CCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCCCCCCCCCCCCCSCSEEEECTTTHHHHHHC
T ss_pred             CccchhhccccccccCHHHHHHHHHHHHcCCCChhhhcCCCCccccccceecccccHHHhhcc
Confidence             55           899999999999999999  8999999964    677888998876654

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=2.3e-35  Score=302.65  Aligned_cols=312  Identities=16%  Similarity=0.242  Sum_probs=254.5

Q ss_pred             cCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      ....+..|+.++|+..+.++++++|+|||+||++|+++.|.|+++++.+++.+.++.|||++++++|++|+|.++||+++
T Consensus       114 ~~~~v~~l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  193 (780)
T 3apo_A          114 DDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFI  193 (780)
T ss_dssp             TCTTEEECCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEE
T ss_pred             CCcceeeechHhHHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEE
Confidence            34578999999999999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccCh---hHHHHHhccCCeEEEEEecCCCC-cCHHHHHHHh-ccC--
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITTT---DEAERILTVESKLVLGFLHDLEG-MESEELAAAS-KLH--  206 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~---~~~~~~~~~~~~~vi~f~~~~~~-~~~~~~~~~a-~~~--  206 (408)
                      |++|+.+.+|.|.++.+.|.+|+.+.+++.+..+.+.   ++++.++..+.+.+++|+..... +....+..++ .+.  
T Consensus       194 ~~~g~~~~~~~G~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~vi~f~~~~~~~~~~~~~~~l~~~f~~~  273 (780)
T 3apo_A          194 FRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGL  273 (780)
T ss_dssp             ECTTSCCEECCSCSCHHHHHHHHHTTSCCCEEECCHHHHHHHHHHHHHHTCEEEEEEECTTSCCCCHHHHHHHHHHTTTT
T ss_pred             EeCCcEeeEecCCCCHHHHHHHHHHhchhhheeccchhhHHHHHhhhccCCCEEEEEecCcccccCHHHHHHHHHHhhcc
Confidence            9999878999999999999999999999999999887   68888887777888888765431 2222222222 111  


Q ss_pred             --------------------------------------------------------------------------------
Q 015368          207 --------------------------------------------------------------------------------  206 (408)
Q Consensus       207 --------------------------------------------------------------------------------  206 (408)
                                                                                                      
T Consensus       274 ~~f~~v~c~~~~~l~~~~gi~~~p~~~f~~~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~~p~v~~it~~~f~~~~~~~~  353 (780)
T 3apo_A          274 VNVGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHR  353 (780)
T ss_dssp             EEEEEEETTTSHHHHTCC-----CEEEECTTCCSSTTTGGGSEEECCCCHHHHHHHHHHHSCCCCEECHHHHHHHHTTSE
T ss_pred             ceEEEEEcCCCHHHHHHhCCCCCceeeeccccccCCCcccceeccccccHHHHHHHHHHhCCCcccCCHHHHHHHhccCC
Confidence                                                                                            


Q ss_pred             ---------------------------CceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCC-CcccccCCcCCHHH
Q 015368          207 ---------------------------SDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEA-GKATPFRHQFTRLA  255 (408)
Q Consensus       207 ---------------------------~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~-~~~~~y~g~~~~~~  255 (408)
                                                 ..+.|+.+   .+..+++.++++    .|++++++..+ +.+..|.|+.+.++
T Consensus       354 ~lv~F~~~~~~~~~~~~~~~~A~~~~~~~i~f~~~D~~~~~~~~~~~~~~----~p~i~l~~~~~~e~~~~~~g~~~~~~  429 (780)
T 3apo_A          354 WLVFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVF----QPSLAVFKGQGTKEYEIHHGKKILYD  429 (780)
T ss_dssp             EEEEEECC-----CCGGGGGHHHHHGGGTEEEEEEEGGGCHHHHHHTTCC----SCEEEEEESSTTSSEEECCSCCCHHH
T ss_pred             eEEEEecCCccccchHHHHHHHHhhccCceeEEEEeCCCchhhHhhcccc----CChhhhccCCCcceeeecccHhhHHH
Confidence                                       23445544   455688888887    39999998866 45788999999999


Q ss_pred             HHHHHhcCCCCceEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccch
Q 015368          256 IANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRV  333 (408)
Q Consensus       256 i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l  333 (408)
                      |.+|+..+..|.+.++|.+++..+  .+.++++ ++.+|+. |....+.++++|++++++   +.|+.+|++..   ..+
T Consensus       430 i~~f~~~~~~~~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~---v~~~~vd~~~~---~~~  501 (780)
T 3apo_A          430 ILAFAKESVNSHVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ---LKVGTLDCTIH---EGL  501 (780)
T ss_dssp             HHHHHHHHHTSCEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC---HHH
T ss_pred             HHHHhhhccCCCCEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEeCCCC---HHH
Confidence            999999999999999999999887  4445544 5556776 889999999999999988   99999999864   478


Q ss_pred             hhhccCCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhcCcc
Q 015368          334 SQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       334 ~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      ++.||+..  .|.+++++. ++++.+.|..+.++|.+|+++++++.+
T Consensus       502 ~~~~~v~~--~Pt~~~~~~-g~~~~~~g~~~~~~l~~fi~~~~~~~v  545 (780)
T 3apo_A          502 CNMYNIQA--YPTTVVFNQ-SSIHEYEGHHSAEQILEFIEDLRNPSV  545 (780)
T ss_dssp             HHHTTCCS--SSEEEEEET-TEEEEECSCSCHHHHHHHHHHHHSCSE
T ss_pred             HHHcCCCc--CCeEEEEcC-CceeeecCcccHHHHHHHHHhhcccce
Confidence            89999965  788888864 666888999999999999999999776

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=100.00  E-value=7.6e-34  Score=291.41  Aligned_cols=308  Identities=19%  Similarity=0.241  Sum_probs=259.5

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      +.+..++.++|+..  .+++++|+|||+||++|++++|.++++++.+++++.|+.|||++++.+|+.|||.++||+++++
T Consensus       440 ~~v~~l~~~~~~~~--~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~  517 (780)
T 3apo_A          440 SHVTTLGPQNFPAS--DKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHEGLCNMYNIQAYPTTVVFN  517 (780)
T ss_dssp             SCEEECCTTTSCTT--CCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             CCCEecCHHHHHHc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcCCeEEEEc
Confidence            45778888888776  7889999999999999999999999999999889999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhcc---CCeEEEEEecCCCCc---CHHHHHHHh-ccCCc
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTV---ESKLVLGFLHDLEGM---ESEELAAAS-KLHSD  208 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~vi~f~~~~~~~---~~~~~~~~a-~~~~~  208 (408)
                      +|+. .+|.|.++.+.|.+|+++.+.+++..++ .++++.++..   +..+++.|+.+||++   ..+.+..+| .+.++
T Consensus       518 ~g~~-~~~~g~~~~~~l~~fi~~~~~~~v~~l~-~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~  595 (780)
T 3apo_A          518 QSSI-HEYEGHHSAEQILEFIEDLRNPSVVSLT-PSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL  595 (780)
T ss_dssp             TTEE-EEECSCSCHHHHHHHHHHHHSCSEEECC-HHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCce-eeecCcccHHHHHHHHHhhcccceeecC-cccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC
Confidence            9854 8899999999999999999999998885 6788888864   457899999999887   455677777 57778


Q ss_pred             eeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCCC---cccccCC-cCCHHHHHHHHhcCCCCceEeeccccccc-cc
Q 015368          209 VNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAG---KATPFRH-QFTRLAIANFVTHTKHPLVVTLTIHNAQF-VF  280 (408)
Q Consensus       209 ~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~~---~~~~y~g-~~~~~~i~~fi~~~~~p~v~~lt~~~~~~-~~  280 (408)
                      +.|+.+   .+..+++.++++   ++|++++|+.++.   .+..|+| .++.++|.+|+.....|.+.+++.+++.. +.
T Consensus       596 v~~~~vd~~~~~~l~~~~~v~---~~Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~~~v~~l~~~~~~~~~~  672 (780)
T 3apo_A          596 INVGSVDCGQYHSFCTQENVQ---RYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVL  672 (780)
T ss_dssp             SEEEEEETTTTHHHHHHTTCC---SSSEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSCCCSEEECHHHHHHHTT
T ss_pred             eEEEEEECcchHHHHHHcCCC---CCCeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcccccccCCHHHHHHHHh
Confidence            999876   456788999998   5999999987654   3677999 78999999999999999999999999865 55


Q ss_pred             cCCccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCcccc
Q 015368          281 QDPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYV  358 (408)
Q Consensus       281 ~~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~  358 (408)
                      ..+.++++. +.+||. |+...+.+.++|++++++   +.|+.+|++..   ..+++.||+.  ..|.++++..+.....
T Consensus       673 ~~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~---~~~~~vd~~~~---~~~~~~~~v~--~~Pt~~~~~~g~~~~~  744 (780)
T 3apo_A          673 QGKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK---VRAGKVDCQAY---PQTCQKAGIK--AYPSVKLYQYERAKKS  744 (780)
T ss_dssp             TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC---HHHHHHTTCC--SSSEEEEEEEETTTTE
T ss_pred             cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---ceEEEEECCCC---HHHHHhcCCC--cCCEEEEEcCCCcccc
Confidence            555666554 456776 899999999999999988   99999999764   4788999995  3688877754333333


Q ss_pred             CCC----CCChHHHHHHHHHHhcC
Q 015368          359 LNG----ELTLSSIKSFGEEFLED  378 (408)
Q Consensus       359 ~~~----~~~~~~i~~Fi~~~~~g  378 (408)
                      +.|    ..+.+.|.+||++.+..
T Consensus       745 ~~G~~~g~~~~~~l~~~l~~~l~~  768 (780)
T 3apo_A          745 IWEEQINSRDAKTIAALIYGKLET  768 (780)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHTTC
T ss_pred             ccCcccCCcCHHHHHHHHHHHHHH
Confidence            333    68999999999999864

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-32  Score=247.89  Aligned_cols=221  Identities=20%  Similarity=0.333  Sum_probs=190.5

Q ss_pred             cCCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--ccHhHHHHcCCCcCcE
Q 015368           54 YAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPT  130 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt  130 (408)
                      ....+++|+.++|++.+ ..+++++|+|||+||++|+++.|.|+++++.+++.+.++.|||+  +++++|++|+|.++||
T Consensus        15 ~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt   94 (298)
T 3ed3_A           15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPT   94 (298)
T ss_dssp             SCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSE
T ss_pred             CCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccce
Confidence            44688999999999988 56789999999999999999999999999999888999999998  6899999999999999


Q ss_pred             EEEEeCCe-----------------EeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCC
Q 015368          131 LYLFVAGV-----------------RQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEG  193 (408)
Q Consensus       131 ~~~~~~g~-----------------~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~  193 (408)
                      +++|++|+                 ....|.|.++.+.|.+|+.+.+++.+..+.+.++++.++..++...+++|.. .+
T Consensus        95 ~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~fs~-~~  173 (298)
T 3ed3_A           95 LMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSK-QD  173 (298)
T ss_dssp             EEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEEEES-SS
T ss_pred             EEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEEEcC-CC
Confidence            99999885                 3688999999999999999999999999999999999998754444445543 45


Q ss_pred             cCHHHHHHHh-ccCCceeEEEecCHhHHhhcCC-----C---------------CCCCCCeEEEeecCCCcccccCC-cC
Q 015368          194 MESEELAAAS-KLHSDVNFYQTTSADVAEFFHI-----H---------------PKSKRPALIFLHLEAGKATPFRH-QF  251 (408)
Q Consensus       194 ~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i-----~---------------~~~~~p~l~~~~~~~~~~~~y~g-~~  251 (408)
                      .....|..+| .+.+++.|+.+.+.+++..+++     +               .....|+|++|+...+.+..|.| .+
T Consensus       174 ~~~~~f~~~A~~~~~~~~F~~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~  253 (298)
T 3ed3_A          174 KISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSI  253 (298)
T ss_dssp             SCCHHHHHHHHHTBTTEEEEEEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEECCCSSC
T ss_pred             cchHHHHHHHHHhhcCcEEEEEcchHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceEEeccccC
Confidence            6778899888 7889999999988877644421     0               00147999999988889999996 68


Q ss_pred             CHHHHHHHHh--cCCCCceEeecccc
Q 015368          252 TRLAIANFVT--HTKHPLVVTLTIHN  275 (408)
Q Consensus       252 ~~~~i~~fi~--~~~~p~v~~lt~~~  275 (408)
                      +.++|.+||.  .+..|++.+||..+
T Consensus       254 ~~~~i~~fi~~~~~~~p~~~~ls~~~  279 (298)
T 3ed3_A          254 NKNDISKFLRDTFSITPNEGPFSRRS  279 (298)
T ss_dssp             CHHHHHHHHHHHHTCCCSSSTTSHHH
T ss_pred             CHHHHHHHHHhhcCCCCCcCCCchHH
Confidence            9999999999  89999999999765

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=230.63  Aligned_cols=230  Identities=15%  Similarity=0.235  Sum_probs=182.7

Q ss_pred             hHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEE
Q 015368          158 EKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF  236 (408)
Q Consensus       158 ~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~  236 (408)
                      ++.+|++..|++.++++.+++.++.++|+||.++++..++.|..+| .+++++.|+.+.+.+++++++++    .|+|++
T Consensus         2 ~~~gP~v~~l~s~~~~~~~l~~~~v~vvgff~~~~~~~~~~f~~~A~~lr~~~~F~~~~~~~v~~~~~~~----~p~i~~   77 (252)
T 2h8l_A            2 PLGSPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDN----GEGIIL   77 (252)
T ss_dssp             ----CCEEECCSHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHTTTTSCEEEECCHHHHHHHCSS----SEEEEE
T ss_pred             CcCCCCceeecCHHHHHHHhhcCCeEEEEEECCCCChHHHHHHHHHHhcccCcEEEEEChHHHHHHhCCC----CCcEEE
Confidence            4678999999999999999999999999999999999999999988 67799999999999999999998    399999


Q ss_pred             eecC------CCccccc-CCcCCHHHHHHHHhcCCCCceEeeccccccccccCCccEEEEEeeC--CC----chHHHHHH
Q 015368          237 LHLE------AGKATPF-RHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPA--YG----SDKVILTF  303 (408)
Q Consensus       237 ~~~~------~~~~~~y-~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i~f~~~--~~----~~~~~~~~  303 (408)
                      |++.      ++....| +|+++.++|.+||..++.|++.++|.+|+..++..  |++++|...  ..    .+.+...+
T Consensus        78 fk~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~  155 (252)
T 2h8l_A           78 FRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGK--DLLIAYYDVDYEKNAKGSNYWRNRV  155 (252)
T ss_dssp             ECCGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSCSSCEECTTTHHHHSSS--SEEEEEECCBTTTBHHHHHHHHHHH
T ss_pred             EcchhhcccccccccccCCCCcCHHHHHHHHHhcccCCeeecccccHhhhcCC--CeEEEEeecchhhcchhHHHHHHHH
Confidence            9852      3567889 99999999999999999999999999999998654  455555432  11    23588889


Q ss_pred             HHHHHHhcCCcceEEEEEEEcCCcccccchhhhccC--CCCCCcEEEEEccCCccccCCCCCChHH--HHHHHHHHhcCc
Q 015368          304 EEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV--SGNAPRVIAYSARDAKKYVLNGELTLSS--IKSFGEEFLEDK  379 (408)
Q Consensus       304 ~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i--~~~~~p~i~i~~~~~~~y~~~~~~~~~~--i~~Fi~~~~~gk  379 (408)
                      +++|++++++.+.+.|+|+|+...  . ++++.||+  +....|++++.+.++++|.|++.++.+.  |.+|++++++|+
T Consensus       156 ~~vA~~~~~k~~~~~F~~~d~~~~--~-~~~~~fgl~~~~~~~P~v~i~~~~~~ky~~~~~~t~~~~~i~~F~~~~~~Gk  232 (252)
T 2h8l_A          156 MMVAKKFLDAGHKLNFAVASRKTF--S-HELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGN  232 (252)
T ss_dssp             HHHHHHHHHTTCCCEEEEEETTTT--H-HHHGGGTCCCCSCSSCEEEEECTTSCEEECCSCCCTTSHHHHHHHHHHHHTC
T ss_pred             HHHHHHccccCceEEEEEEchHHH--H-HHHHHcCCCCccCCCCEEEEEeCcCcEecCCcccCcchHHHHHHHHHHHCCC
Confidence            999999986434599999998753  3 57899999  5567899999987788999988999999  999999999999


Q ss_pred             c--ccccccCchhhhcCccC
Q 015368          380 L--LNQSDQISETILKLPSQ  397 (408)
Q Consensus       380 ~--~~kse~iP~~~~~~~~~  397 (408)
                      +  ++||||||++ +.++++
T Consensus       233 l~~~~kSe~iPe~-~~~pV~  251 (252)
T 2h8l_A          233 LKRYLKSEPIPES-NDGAAA  251 (252)
T ss_dssp             SCCCC---------------
T ss_pred             ccccccCCCCCCC-CCCCCC
Confidence            9  8999999998 777664

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.97  E-value=9.6e-30  Score=224.30  Aligned_cols=208  Identities=23%  Similarity=0.411  Sum_probs=178.3

Q ss_pred             cCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCC---cEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE---ADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      ..+.+..+++++|+..+.++++++|+|||+||++|+++.|.|+++++.+++.   +.++.|||++++++|++|+|+++||
T Consensus        13 ~~~~v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt   92 (241)
T 3idv_A           13 EENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPT   92 (241)
T ss_dssp             EETTEEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSE
T ss_pred             cCCCcEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCE
Confidence            3568999999999999999999999999999999999999999999999874   9999999999999999999999999


Q ss_pred             EEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCC------cccccChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHH
Q 015368          131 LYLFVAGVRQFQFFGERTRDVISAWVREKMTLG------TYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAA  201 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~------~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~  201 (408)
                      +++|++|+.+ +|.|.++.+.+.+|+.+...+.      .....+.++++.++..++.+++.|+++||.++   .+.+..
T Consensus        93 ~~~~~~g~~~-~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~  171 (241)
T 3idv_A           93 IKILKKGQAV-DYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEK  171 (241)
T ss_dssp             EEEEETTEEE-ECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHH
T ss_pred             EEEEcCCCcc-cccCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHH
Confidence            9999999655 7999999999999999988653      22334678899999888999999999999874   456666


Q ss_pred             Hh-ccC---CceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCc
Q 015368          202 AS-KLH---SDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPL  267 (408)
Q Consensus       202 ~a-~~~---~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~  267 (408)
                      ++ ++.   ..+.|+.+   .+.+++++|++.   ++|++++|+.+  ....|.|..+.++|.+||....-|.
T Consensus       172 ~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~---~~Pt~~~~~~g--~~~~~~g~~~~~~l~~~l~~~~~~~  239 (241)
T 3idv_A          172 AAKELSKRSPPIPLAKVDATAETDLAKRFDVS---GYPTLKIFRKG--RPYDYNGPREKYGIVDYMIEQSGAA  239 (241)
T ss_dssp             HHHHHHTSSSCCCEEEEETTTCHHHHHHTTCC---SSSEEEEEETT--EEEECCSCCSHHHHHHHHHHHTTCT
T ss_pred             HHHHHhccCCcEEEEEEECCCCHHHHHHcCCc---ccCEEEEEECC--eEEEecCCCCHHHHHHHHHhhhCCC
Confidence            65 343   33777765   467899999999   59999999864  5667999999999999999876653

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.97  E-value=1.8e-30  Score=229.31  Aligned_cols=225  Identities=17%  Similarity=0.226  Sum_probs=182.2

Q ss_pred             HhCCCcccccChhHHHHHhcc-CCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEE
Q 015368          159 KMTLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF  236 (408)
Q Consensus       159 ~~~~~~~~i~~~~~~~~~~~~-~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~  236 (408)
                      +.+|++..|++.++++.+++. ++.++|+||.++++..++.|..+| .+++++.|+.+.+.+++++++++.    |+|++
T Consensus         3 ~~gP~v~~l~s~~~~~~~~~~~~~v~vVgff~~~~~~~~~~F~~~A~~lr~~~~F~~t~~~~v~~~~~v~~----p~ivl   78 (250)
T 3ec3_A            3 LGSPPSKEILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEIAKFLKVSL----GKLVL   78 (250)
T ss_dssp             --CCSSEECCCHHHHHHHHHHCSSCEEEEECSCTTCHHHHHHHHHHHHHTTTCCEEEECCHHHHHHHTCCS----SEEEE
T ss_pred             CCCCCceecCCHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHHHHHHhhhcCcEEEEECcHHHHHHcCCCC----CeEEE
Confidence            468999999999999999998 999999999999999999999998 688999999999999999999983    99999


Q ss_pred             eecC------CCcccccC--CcCCHHHHHHHHhcCCCCceEeeccccccccccCCccEEEEEeeCC-------CchHHHH
Q 015368          237 LHLE------AGKATPFR--HQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAY-------GSDKVIL  301 (408)
Q Consensus       237 ~~~~------~~~~~~y~--g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i~f~~~~-------~~~~~~~  301 (408)
                      |++.      ++....|+  |.++.++|.+||..++.|++.++|.+|+..++. +.|++++|...+       +.+.++.
T Consensus        79 fk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~-~~~l~~~~~~~d~~~~~~~~~~~~~~  157 (250)
T 3ec3_A           79 MQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRYS-KRPLVVVYYSVDFSFDYRTATQFWRN  157 (250)
T ss_dssp             ECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSCTEEEECTTTHHHHSC-SSSEEEEEECCCCSTTTHHHHHHHHH
T ss_pred             EecchhhccccccceeccCCCCCCHHHHHHHHHHcCCCceeecCccchhhhhc-cCccEEEEEecccccccchhHHHHHH
Confidence            9963      45678888  478999999999999999999999999998884 567777766421       1356888


Q ss_pred             HHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC-CcEEEEEccCCccccCC-CCCChHHHHHHHHHHhcCc
Q 015368          302 TFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA-PRVIAYSARDAKKYVLN-GELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       302 ~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~-~p~i~i~~~~~~~y~~~-~~~~~~~i~~Fi~~~~~gk  379 (408)
                      .++++|++++ +   ++|+|+|+.+.  . +.++.||++... +|.+++.+.++++|.+. +.++.++|.+|++++++|+
T Consensus       158 ~~~~vAk~~k-k---i~F~~~d~~~~--~-~~l~~fgl~~~~~~p~~~~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gk  230 (250)
T 3ec3_A          158 KVLEVAKDFP-E---YTFAIADEEDY--A-TEVKDLGLSESGGDVNAAILDESGKKFAMEPEEFDSDALREFVMAFKKGK  230 (250)
T ss_dssp             HHHHHHTTCT-T---SEEEEEETTTT--H-HHHHHTTCSSCSCSCEEEEECTTSCEEECCCCSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhc-c---eeEEEEcHHHH--H-HHHHHcCCCccCCCcEEEEEcCCCceecCCcccCCHHHHHHHHHHHHCCC
Confidence            9999999999 8   99999998653  3 456899998643 56777777788899987 6899999999999999999


Q ss_pred             c--ccccccCchhhhcCcc
Q 015368          380 L--LNQSDQISETILKLPS  396 (408)
Q Consensus       380 ~--~~kse~iP~~~~~~~~  396 (408)
                      +  ++||||||++ +.+++
T Consensus       231 l~p~~kSepiPe~-~~~pV  248 (250)
T 3ec3_A          231 LKPVIKSQPVPKN-NKGAA  248 (250)
T ss_dssp             CCCCC--------------
T ss_pred             ccceeecCCCCCC-CCCCC
Confidence            9  9999999998 55544

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.95  E-value=2e-26  Score=200.53  Aligned_cols=210  Identities=17%  Similarity=0.252  Sum_probs=182.4

Q ss_pred             CCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCC
Q 015368          162 LGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA  241 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~  241 (408)
                      ..+.+|.+.++++.+++.++.++|+||.++|+..++.|..+|....++.|+++.+.+++++++++   + |+|++|+..+
T Consensus         9 ~~~~~l~s~~~~~~~l~~~~v~vVgff~~~~~~~~~~f~~~A~~l~~~~F~~t~~~~v~~~~~v~---~-p~i~lfk~~~   84 (227)
T 4f9z_D            9 QEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKFPGVSFGISTDSEVLTHYNIT---G-NTICLFRLVD   84 (227)
T ss_dssp             CCCEECCSHHHHHHHHHTSSEEEEEECSCSCSTHHHHHHHHTTTCTTSEEEEECCHHHHHHTTCC---S-SEEEEEETTT
T ss_pred             CCCeeeCCHHHHHHHHhcCCeEEEEEecCCCchhHHHHHHHHHhCCCceEEEECCHHHHHHcCCC---C-CeEEEEEecC
Confidence            45678899999999999999999999999999999999999954469999999999999999998   3 9999999876


Q ss_pred             CcccccCC----cCCHHHHHHHHhcCCCCceEeeccccccccccCCccEE-EEEeeC-C-CchHHHHHHHHHHHHhcCCc
Q 015368          242 GKATPFRH----QFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPRKQL-WLFAPA-Y-GSDKVILTFEEVAKALKGKV  314 (408)
Q Consensus       242 ~~~~~y~g----~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~-i~f~~~-~-~~~~~~~~~~~vA~~~~~~~  314 (408)
                      ..+..|+|    .++.++|.+||..++.|++.++|.+|+..++..+.|.+ ++|.+. + +++++...++++|++++++ 
T Consensus        85 ~~~~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~-  163 (227)
T 4f9z_D           85 NEQLNLEDEDIESIDATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK-  163 (227)
T ss_dssp             TEEEEECHHHHHTCCHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT-
T ss_pred             cccccccccccCCCCHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC-
Confidence            67778885    78999999999999999999999999999998887655 456553 2 4778899999999999999 


Q ss_pred             ceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCccccCC-CCCChHHHHHHHHHHhcCc
Q 015368          315 NMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLN-GELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       315 ~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~y~~~-~~~~~~~i~~Fi~~~~~gk  379 (408)
                        +.|+|+|+++..+. ++++.||++....|.+++++. ++++|.+. +.++.++|.+|++++++||
T Consensus       164 --i~F~~vd~~~~~~~-~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~Gk  227 (227)
T 4f9z_D          164 --ILFILVDSGMKENG-KVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLSGK  227 (227)
T ss_dssp             --CEEEEEETTSGGGH-HHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHTTC
T ss_pred             --EEEEEeCCccHhHH-HHHHHcCCCcccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHHhCCC
Confidence              99999999755533 567999998667899999987 55678775 6899999999999999996

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.94  E-value=3e-26  Score=214.14  Aligned_cols=241  Identities=21%  Similarity=0.368  Sum_probs=207.6

Q ss_pred             HHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEE
Q 015368          156 VREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALI  235 (408)
Q Consensus       156 i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~  235 (408)
                      +.....+.+..|.+.++++.+++.++.++|+||.+.++..++.|..+|....++.|+.+++.+++++++++    .|+++
T Consensus        11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~vvgff~~~~~~~~~~f~~~A~~~~~~~F~~t~~~~v~~~~~v~----~~~i~   86 (361)
T 3uem_A           11 FQGPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KDGVV   86 (361)
T ss_dssp             TSCCCCSSSEECCSHHHHHHHHHTSSEEEEEECSCTTSHHHHHHHHHHHHCSSSCEEEECCHHHHHHTTCS----SSEEE
T ss_pred             ecCCccccceecCCHHHHHHHHhcCCcEEEEEEcCCCchHHHHHHHHHhcCCCceEEEECcHHHHHHhCCC----CCeEE
Confidence            33344567788999999999999999999999998888899999999954489999999999999999998    39999


Q ss_pred             EeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeeccccccccccCCc-cEEEEEee-CCC-chHHHHHHHHHHHHhcC
Q 015368          236 FLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNAQFVFQDPR-KQLWLFAP-AYG-SDKVILTFEEVAKALKG  312 (408)
Q Consensus       236 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~-~~~i~f~~-~~~-~~~~~~~~~~vA~~~~~  312 (408)
                      +|+..++.+..|+|+++.++|.+||..+..|++.+++.+++..++..+. +++++|+. ++. ++++...|+++|+++++
T Consensus        87 lfk~f~~~~~~~~g~~~~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~  166 (361)
T 3uem_A           87 LFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG  166 (361)
T ss_dssp             EEESSTTSEEECCSCCCHHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTT
T ss_pred             EEEecCCCccccCCcCCHHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccC
Confidence            9998777889999999999999999999999999999999999998876 44555554 554 89999999999999999


Q ss_pred             CcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc--CCccccCC-CCCChHHHHHHHHHHhcCcc--ccccccC
Q 015368          313 KVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR--DAKKYVLN-GELTLSSIKSFGEEFLEDKL--LNQSDQI  387 (408)
Q Consensus       313 ~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~--~~~~y~~~-~~~~~~~i~~Fi~~~~~gk~--~~kse~i  387 (408)
                      +   +.|+++|++..+ .+++++.||+.....|.+++++.  ...+|.+. +.++.+.|.+|++++++|++  +.+|+++
T Consensus       167 ~---i~f~~vd~~~~~-~~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~  242 (361)
T 3uem_A          167 K---ILFIFIDSDHTD-NQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQEL  242 (361)
T ss_dssp             T---CEEEEECTTSGG-GHHHHHHTTCCTTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCC
T ss_pred             c---eEEEEecCChHH-HHHHHHHcCCCccCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCC
Confidence            9   999999998433 45888999998766889988886  34678765 68999999999999999999  8999999


Q ss_pred             chh-----hhcCccCCccceee
Q 015368          388 SET-----ILKLPSQSRASYQL  404 (408)
Q Consensus       388 P~~-----~~~~~~~~~~~~~~  404 (408)
                      |+.     +..+.+++|++.++
T Consensus       243 p~~~~~~~v~~l~~~~f~~~~~  264 (361)
T 3uem_A          243 PEDWDKQPVKVLVGKNFEDVAF  264 (361)
T ss_dssp             CTTTTTSSSEEECTTTHHHHHT
T ss_pred             CcccccCCcEEeecCchhhhcc
Confidence            976     66677888887664

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.92  E-value=1.6e-23  Score=184.54  Aligned_cols=201  Identities=18%  Similarity=0.275  Sum_probs=148.0

Q ss_pred             CCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeC--cccHhHHHHcCCCcC
Q 015368           55 AKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDA--YLEKDLAKEYNILAY  128 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~--~~~~~~~~~~~i~~~  128 (408)
                      ...+..+++++|+..+ .++++++|+|||+||++|+++.|.|+++++.+++   ++.|+.|||  ++++++|++|+|.++
T Consensus        11 ~~~v~~l~~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~   90 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGF   90 (244)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSS
T ss_pred             CCCceeCChhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCcc
Confidence            4678999999999877 5569999999999999999999999999999987   899999999  678999999999999


Q ss_pred             cEEEEEeCCe-----EeEEeeCCCCHHHHHHHHHhHhCCCcc---------cccChhHHHHHhcc--CCeEEEEEecCCC
Q 015368          129 PTLYLFVAGV-----RQFQFFGERTRDVISAWVREKMTLGTY---------SITTTDEAERILTV--ESKLVLGFLHDLE  192 (408)
Q Consensus       129 Pt~~~~~~g~-----~~~~~~g~~~~~~l~~~i~~~~~~~~~---------~i~~~~~~~~~~~~--~~~~vi~f~~~~~  192 (408)
                      ||+++|++|+     ...++.| .+.+.|.++|.+.+.....         ...+.+++..++..  ....+++|... .
T Consensus        91 Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~~~al~f~~~-~  168 (244)
T 3q6o_A           91 PTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXG-G  168 (244)
T ss_dssp             SEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCSEEEEEEECT-T
T ss_pred             CEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCceEEEEEEEC-C
Confidence            9999999642     2235666 6999999999998854331         23356778877743  34444544433 3


Q ss_pred             CcCHHHHHHHhccCCceeEEEecC--HhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcC-CHHHHHHHHh
Q 015368          193 GMESEELAAASKLHSDVNFYQTTS--ADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF-TRLAIANFVT  261 (408)
Q Consensus       193 ~~~~~~~~~~a~~~~~~~f~~~~~--~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~-~~~~i~~fi~  261 (408)
                      ......+.........+.+..+.+  ..++++|+++   ++|+++++..++ +...++... +.+.+..+++
T Consensus       169 ~~~~~~~~~d~~~~~~i~v~~~~~~~~~l~~~f~v~---~~Pslvl~~~~g-~~~~~~~~~~~r~~~~~~l~  236 (244)
T 3q6o_A          169 SYLAREVALDLSQHKGVAVRRVLNTEANVVRKFGVT---DFPSCYLLFRNG-SVSRVPVLMESRSFYTAYLQ  236 (244)
T ss_dssp             CCHHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCC---CSSEEEEEETTS-CEEECCCSSSSHHHHHHHHH
T ss_pred             cchHHHHHHHhccCCceEEEEEeCchHHHHHHcCCC---CCCeEEEEeCCC-CeEeeccccccHHHHHHHHH
Confidence            322222222112335566666544  8999999999   599999888754 666666443 3456666664

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.92  E-value=5.6e-24  Score=173.46  Aligned_cols=136  Identities=21%  Similarity=0.306  Sum_probs=124.1

Q ss_pred             CCccccccChhhhhhhccCCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCc
Q 015368           27 QSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEA  106 (408)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v  106 (408)
                      .+|...+++++........|+......-...+.++++.+|+..+.++++++|+|||+||++|+.+.|.|+++++.+++++
T Consensus        18 ~~c~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v   97 (155)
T 2ppt_A           18 LACGQANKVPSDRLAAGPKCGICGAGLITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQV   97 (155)
T ss_dssp             TTTCCEEEEEGGGTTSCCBCTTTCCBSCCSSEEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccccccccCCcccccCCCCCCcCCccccCCCCccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCE
Confidence            36788899998888888888886665556788999999999988788999999999999999999999999999998889


Q ss_pred             EEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          107 DLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       107 ~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      .|+.||++++++++++|+|+++||+++|++|+.+.++.|..+.++|.+||++.++.
T Consensus        98 ~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A           98 RLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             EEEEEETTTSTHHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             EEEEEeCCccHHHHHHcCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999988754

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.91  E-value=1.7e-23  Score=158.29  Aligned_cols=96  Identities=23%  Similarity=0.437  Sum_probs=88.3

Q ss_pred             ChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368           62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        62 ~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      +.++|++.+.  ++++++|+|||+||+||+.+.|.++++++.++ ++.|+.||++++++++++|+|+++||+++|++|+.
T Consensus         7 ~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~G~~   85 (105)
T 3zzx_A            7 DQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-DVVFLKVDVDECEDIAQDNQIACMPTFLFMKNGQK   85 (105)
T ss_dssp             SHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccC-CeEEEEEecccCHHHHHHcCCCeecEEEEEECCEE
Confidence            4578988773  47899999999999999999999999999987 69999999999999999999999999999999999


Q ss_pred             eEEeeCCCCHHHHHHHHHhH
Q 015368          140 QFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       140 ~~~~~g~~~~~~l~~~i~~~  159 (408)
                      +.++.| .+.++|.++|+++
T Consensus        86 v~~~~G-~~~~~l~~~i~k~  104 (105)
T 3zzx_A           86 LDSLSG-ANYDKLLELVEKN  104 (105)
T ss_dssp             EEEEES-CCHHHHHHHHHHH
T ss_pred             EEEEeC-cCHHHHHHHHHhc
Confidence            999999 5899999999875

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.91  E-value=1.6e-23  Score=169.86  Aligned_cols=136  Identities=19%  Similarity=0.350  Sum_probs=123.2

Q ss_pred             CCccccccChhhhhhhccCCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCc
Q 015368           27 QSHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEA  106 (408)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v  106 (408)
                      .+|...++++.........|+..........+..+++++|+..+.++++++|+||++||++|+.+.|.|+++++.+++++
T Consensus         9 ~~c~~~n~~p~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~   88 (148)
T 3p2a_A            9 TACMATNRLPEERIDDGAKCGRCGHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKV   88 (148)
T ss_dssp             TTTCCEEEEESSCSCSCCBCTTTCCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTC
T ss_pred             cccccccCCCCcccccCCcchhcCCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCce
Confidence            35666777887777777777776666667789999999999999889999999999999999999999999999998899


Q ss_pred             EEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          107 DLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       107 ~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      .|+.||++++++++++|+|.++||+++|++|+.+.++.|..+.+.|.+||++.+..
T Consensus        89 ~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A           89 RFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             EEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred             EEEEEECcCCHHHHHHCCCCccCEEEEEECCeEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999988754

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.91  E-value=1e-22  Score=177.68  Aligned_cols=192  Identities=11%  Similarity=0.149  Sum_probs=152.0

Q ss_pred             hhHHHHH--cCCCcEEEEEe-----cCCChhHHhhhHHHHHHHHHh--cCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           64 KNFSEFM--GKNRNVMVMFY-----ANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        64 ~~~~~~~--~~~~~~~v~f~-----a~wC~~C~~~~p~~~~~~~~~--~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +.++..+  ...++++|.||     +|||++|+.+.|.|.++++.+  .+++.++.|||++++++|++|+|+++||+++|
T Consensus         9 ~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~   88 (229)
T 2ywm_A            9 MQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIE   88 (229)
T ss_dssp             HHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEE
T ss_pred             HHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEE
Confidence            3455555  33456665555     999999999999999999888  55899999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhHhC--CCcccccChhHHHHHhccCCeE-EEEEecCCCCcCHH---HHHHHhccCCc
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREKMT--LGTYSITTTDEAERILTVESKL-VLGFLHDLEGMESE---ELAAASKLHSD  208 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~--~~~~~i~~~~~~~~~~~~~~~~-vi~f~~~~~~~~~~---~~~~~a~~~~~  208 (408)
                      ++|....+|.|.++.+++..|+...+.  ..+..+ +.+.++.+...+..+ ++.|+++||.++..   .+..++...++
T Consensus        89 ~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~  167 (229)
T 2ywm_A           89 GDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQL-SEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDY  167 (229)
T ss_dssp             SSSCCCEEEESCCCTTHHHHHHHHHHHHHTTCCSC-CHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTT
T ss_pred             CCCcccceecCCccHHHHHHHHHHHHhccCCccCC-CHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCCC
Confidence            977788999999999999999988753  344455 567788777665555 67799999998544   45555533367


Q ss_pred             eeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          209 VNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       209 ~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      +.++.+   .+.+++++|++.   ++|++++  ++  ....|.|..+.+++.+|+...
T Consensus       168 v~~~~vd~~~~~~l~~~~~v~---~~Pt~~~--~G--~~~~~~G~~~~~~l~~~l~~~  218 (229)
T 2ywm_A          168 ITSKVIDASENQDLAEQFQVV---GVPKIVI--NK--GVAEFVGAQPENAFLGYIMAV  218 (229)
T ss_dssp             EEEEEEEGGGCHHHHHHTTCC---SSSEEEE--GG--GTEEEESCCCHHHHHHHHHHH
T ss_pred             eEEEEEECCCCHHHHHHcCCc---ccCEEEE--CC--EEEEeeCCCCHHHHHHHHHHH
Confidence            887765   467899999998   5999997  32  345589999999999999753

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.91  E-value=6.2e-23  Score=178.77  Aligned_cols=193  Identities=13%  Similarity=0.178  Sum_probs=153.3

Q ss_pred             hhHHHHH---cCCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc--cHhHHHHcCCCcCcEEEEEeCC
Q 015368           64 KNFSEFM---GKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFVAG  137 (408)
Q Consensus        64 ~~~~~~~---~~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~g  137 (408)
                      ++++..+   .++++++|.||++ ||++|+++.|.++++++. .+++.++.|||++  ++++|++|||.++||+++|++|
T Consensus        10 ~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g   88 (226)
T 1a8l_A           10 KVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDG   88 (226)
T ss_dssp             HHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETT
T ss_pred             HHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCC
Confidence            4455555   2456778999999 999999999999999865 4589999999999  9999999999999999999988


Q ss_pred             eEe-EEeeCCCCHHHHHHHHHhHhC--CCcccccChhHHHHHhccCCeE-EEEEecCCCCcCHH---HHHHHh-ccC---
Q 015368          138 VRQ-FQFFGERTRDVISAWVREKMT--LGTYSITTTDEAERILTVESKL-VLGFLHDLEGMESE---ELAAAS-KLH---  206 (408)
Q Consensus       138 ~~~-~~~~g~~~~~~l~~~i~~~~~--~~~~~i~~~~~~~~~~~~~~~~-vi~f~~~~~~~~~~---~~~~~a-~~~---  206 (408)
                      +.. .+|.|..+.+.+..|+...+.  .....+ +.+.++.+...++.+ ++.|+++||.++..   .+..++ .+.   
T Consensus        89 ~~~~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l-~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~  167 (226)
T 1a8l_A           89 KDFGVRYFGLPAGHEFAAFLEDIVDVSREETNL-MDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAG  167 (226)
T ss_dssp             BCCSEEEESCCCTTHHHHHHHHHHHHHHTCCCC-CHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             ceeeEEEeccCcHHHHHHHHHHHHhhcCCCCCC-CHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhccccc
Confidence            654 789999999999999988652  233344 556777776665656 88899999998544   455555 333   


Q ss_pred             -CceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          207 -SDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       207 -~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                       +++.++.+   .+.+++++|++.   ++|++++++.+. ....|.|..+.+++.+||..
T Consensus       168 ~~~v~~~~vd~~~~~~l~~~~~v~---~~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~  223 (226)
T 1a8l_A          168 KGKILGDMVEAIEYPEWADQYNVM---AVPKIVIQVNGE-DRVEFEGAYPEKMFLEKLLS  223 (226)
T ss_dssp             CCCEEEEEEEGGGCHHHHHHTTCC---SSCEEEEEETTE-EEEEEESCCCHHHHHHHHHH
T ss_pred             CCcEEEEEEEcccCHHHHHhCCCc---ccCeEEEEeCCc-eeEEEcCCCCHHHHHHHHHH
Confidence             47777766   567799999998   599999997543 45678899999999999975

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.90  E-value=7.1e-21  Score=177.66  Aligned_cols=302  Identities=17%  Similarity=0.235  Sum_probs=231.9

Q ss_pred             CCcEEc-ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSL-NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +.+..+ +.+++++++..++.++|.|+.+-+..+   ...|.++|+.+ +++.|+.++   +.++|+++++.. |++++|
T Consensus        17 ~~~~~l~~~~~~~~~~~~~~~~vvgff~~~~~~~---~~~f~~~A~~~-~~~~F~~t~---~~~v~~~~~v~~-~~i~lf   88 (361)
T 3uem_A           17 EFATTLPDGAAAESLVESSEVAVIGFFKDVESDS---AKQFLQAAEAI-DDIPFGITS---NSDVFSKYQLDK-DGVVLF   88 (361)
T ss_dssp             SSSEECCSHHHHHHHHHTSSEEEEEECSCTTSHH---HHHHHHHHHHC-SSSCEEEEC---CHHHHHHTTCSS-SEEEEE
T ss_pred             ccceecCCHHHHHHHHhcCCcEEEEEEcCCCchH---HHHHHHHHhcC-CCceEEEEC---cHHHHHHhCCCC-CeEEEE
Confidence            456667 558899999888999999998876654   46899999988 578888665   789999999998 999999


Q ss_pred             eC-CeEeEEeeCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhcc-CCeEEEEEecCCCCcC---HHHHHHHh-ccCCc
Q 015368          135 VA-GVRQFQFFGERTRDVISAWVREKMTLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGME---SEELAAAS-KLHSD  208 (408)
Q Consensus       135 ~~-g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~  208 (408)
                      ++ ......|.|..+.+.|.+||.....+.+.+++. +.+..+... .+.+++.|+.+||.+.   .+.+..+| ++.++
T Consensus        89 k~f~~~~~~~~g~~~~~~i~~fi~~~~~p~v~~~~~-~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~  167 (361)
T 3uem_A           89 KKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTE-QTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK  167 (361)
T ss_dssp             ESSTTSEEECCSCCCHHHHHHHHHHHSSCSEEECST-TTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT
T ss_pred             EecCCCccccCCcCCHHHHHHHHHHcCCCcceecCc-ccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc
Confidence            84 224568899999999999999999999988854 566666654 4566777888888764   45577777 67888


Q ss_pred             eeEEEec-----CHhHHhhcCCCCCCCCCeEEEeecCCCcccccC---CcCCHHHHHHHHhcCC----------------
Q 015368          209 VNFYQTT-----SADVAEFFHIHPKSKRPALIFLHLEAGKATPFR---HQFTRLAIANFVTHTK----------------  264 (408)
Q Consensus       209 ~~f~~~~-----~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~---g~~~~~~i~~fi~~~~----------------  264 (408)
                      +.|+.+.     ...+++.|+++. .++|++++++.++ ....|.   |.++.++|.+|+....                
T Consensus       168 i~f~~vd~~~~~~~~~~~~fgi~~-~~~P~~~~~~~~~-~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~  245 (361)
T 3uem_A          168 ILFIFIDSDHTDNQRILEFFGLKK-EECPAVRLITLEE-EMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPED  245 (361)
T ss_dssp             CEEEEECTTSGGGHHHHHHTTCCT-TTCSEEEEEECC---CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTT
T ss_pred             eEEEEecCChHHHHHHHHHcCCCc-cCCccEEEEEcCC-cccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcc
Confidence            9998763     457899999972 1389999998743 333443   7899999999998631                


Q ss_pred             --CCceEeecccccccccc-CCccE-EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccC
Q 015368          265 --HPLVVTLTIHNAQFVFQ-DPRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGV  339 (408)
Q Consensus       265 --~p~v~~lt~~~~~~~~~-~~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i  339 (408)
                        ...+..++..++..+.. .+.++ +.++.+||. |+...+.|.++|.+++++ .++.|+.+|++...     ++.+++
T Consensus       246 ~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~-~~v~~~~vd~~~~~-----~~~~~v  319 (361)
T 3uem_A          246 WDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDH-ENIVIAKMDSTANE-----VEAVKV  319 (361)
T ss_dssp             TTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTC-SSEEEEEEETTTCB-----CSSCCC
T ss_pred             cccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccC-CcEEEEEEECCccc-----hhhcCC
Confidence              12377888888887663 44444 446677887 999999999999999864 24999999988643     577888


Q ss_pred             CCCCCcEEEEEccC--CccccCCCCCChHHHHHHHHHHh
Q 015368          340 SGNAPRVIAYSARD--AKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       340 ~~~~~p~i~i~~~~--~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      ..  .|.++++..+  .....+.|..+.+.|.+||++..
T Consensus       320 ~~--~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  356 (361)
T 3uem_A          320 HS--FPTLKFFPASADRTVIDYNGERTLDGFKKFLESGG  356 (361)
T ss_dssp             CS--SSEEEEECSSSSCCCEECCSCSSHHHHHHHHTTTS
T ss_pred             cc--cCeEEEEECCCCcceeEecCCCCHHHHHHHHHhcC
Confidence            53  6888888653  34567899999999999998654

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.90  E-value=4.4e-23  Score=160.36  Aligned_cols=105  Identities=12%  Similarity=0.113  Sum_probs=97.8

Q ss_pred             CCcEEcChhhHHHHHcCCC-cEEEEEecCCC--hhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSLNGKNFSEFMGKNR-NVMVMFYANWC--YWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~-~~~v~f~a~wC--~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      .....+|+++|++.+.+++ +++|+|||+||  ++|+.+.|.+++++++|.+++.|++||.|++++++.+|+|+++||++
T Consensus        15 ~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTli   94 (137)
T 2qsi_A           15 NAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLA   94 (137)
T ss_dssp             --CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEE
T ss_pred             cCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEE
Confidence            3566899999998886555 99999999999  99999999999999999989999999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|++|+.+.+..|..+.+++.++|++.+
T Consensus        95 lFkdG~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           95 VVQPERTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             EEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999998876

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.89  E-value=3.4e-23  Score=161.60  Aligned_cols=108  Identities=6%  Similarity=0.096  Sum_probs=100.2

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCC--ChhHHhhhHHHHHHHHHhcCC-cEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANW--CYWSKKLAPEFAAAAKMLKGE-ADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~w--C~~C~~~~p~~~~~~~~~~~~-v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      .+..+++++|++.+.++++++|+|||+|  |++|+.+.|.+++++++|.++ +.|++||+|++++++.+|||+++||+++
T Consensus        18 g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlil   97 (140)
T 2qgv_A           18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLV   97 (140)
T ss_dssp             TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEE
T ss_pred             CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence            5678999999988888889999999999  999999999999999999988 9999999999999999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHhCCCc
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~  164 (408)
                      |++|+.+.+..|..+.+.+.+||++.+..+.
T Consensus        98 Fk~G~~v~~~~G~~~k~~l~~~i~~~l~~~~  128 (140)
T 2qgv_A           98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQQ  128 (140)
T ss_dssp             EETTEEEEEEESCCCHHHHHHHHHHHHC---
T ss_pred             EECCEEEEEEecCCCHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999998885443

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.89  E-value=3.2e-22  Score=153.68  Aligned_cols=106  Identities=17%  Similarity=0.323  Sum_probs=100.5

Q ss_pred             CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      ..+..++.++|+..+ .++++++|.||++||++|+.+.|.++++++.+++++.|+.||++++++++++|+|.++||+++|
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~   83 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYF   83 (111)
T ss_dssp             CCSEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEE
T ss_pred             CcceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEE
Confidence            367899999999988 7889999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ++|+.+.++.|..+.+.+.+||++.++
T Consensus        84 ~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           84 KDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             ETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             ECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            999999999999999999999998764

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.89  E-value=1.3e-22  Score=159.84  Aligned_cols=106  Identities=17%  Similarity=0.328  Sum_probs=95.9

Q ss_pred             cCCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhc-----CCcEEEEEeCcccHhHHHHcCCCc
Q 015368           54 YAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK-----GEADLVMVDAYLEKDLAKEYNILA  127 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~-----~~v~~~~v~~~~~~~~~~~~~i~~  127 (408)
                      ....+..|++++|+..+ .++++++|+|||+||++|+.+.|.|+++++.+.     +++.++.|||++++++|++|+|.+
T Consensus        13 ~~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~   92 (127)
T 3h79_A           13 RPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSG   92 (127)
T ss_dssp             CCCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCS
T ss_pred             CCCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCcc
Confidence            34688999999999888 468999999999999999999999999998764     379999999999999999999999


Q ss_pred             CcEEEEEeCCeEe--EEeeCCCCHHHHHHHHHhH
Q 015368          128 YPTLYLFVAGVRQ--FQFFGERTRDVISAWVREK  159 (408)
Q Consensus       128 ~Pt~~~~~~g~~~--~~~~g~~~~~~l~~~i~~~  159 (408)
                      +||+++|++|+..  .+|.|.++.+.|.+||.++
T Consensus        93 ~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           93 FPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             SSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            9999999977543  6899999999999999875

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.89  E-value=2e-22  Score=155.09  Aligned_cols=105  Identities=21%  Similarity=0.367  Sum_probs=99.6

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG  137 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g  137 (408)
                      +..++.++|++.+ ++++++|+|||+||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++||+++|++|
T Consensus         3 v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G   81 (112)
T 2voc_A            3 IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDG   81 (112)
T ss_dssp             CEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEEETT
T ss_pred             eEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEEeCC
Confidence            5688999999888 889999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             eEeEEeeCCCCHHHHHHHHHhHhCCC
Q 015368          138 VRQFQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       138 ~~~~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                      +.+.++.|..+.+++.+|+.+.++++
T Consensus        82 ~~~~~~~G~~~~~~l~~~l~~~~~~~  107 (112)
T 2voc_A           82 EVVETSVGFKPKEALQELVNKHLLEH  107 (112)
T ss_dssp             EEEEEEESCCCHHHHHHHHHTTSCSC
T ss_pred             EEEEEEeCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999988655

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.89  E-value=2.1e-21  Score=187.32  Aligned_cols=202  Identities=15%  Similarity=0.242  Sum_probs=149.7

Q ss_pred             CCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCc--ccHhHHHHcCCCcC
Q 015368           55 AKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAY--LEKDLAKEYNILAY  128 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~--~~~~~~~~~~i~~~  128 (408)
                      ...+..+++++|+..+ .++++++|+|||+||++|++++|.|+++++++++   ++.|+.|||+  +++++|++|+|.++
T Consensus        11 ~~~V~~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~   90 (519)
T 3t58_A           11 SDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGF   90 (519)
T ss_dssp             TSSSEEECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSB
T ss_pred             CCCcEECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCccc
Confidence            4578999999999877 5679999999999999999999999999999987   7999999995  58999999999999


Q ss_pred             cEEEEEe----CCeEeEEeeCCCCHHHHHHHHHhHhCCCc----------ccccChhHHHHHhccC--CeEEEEEecCCC
Q 015368          129 PTLYLFV----AGVRQFQFFGERTRDVISAWVREKMTLGT----------YSITTTDEAERILTVE--SKLVLGFLHDLE  192 (408)
Q Consensus       129 Pt~~~~~----~g~~~~~~~g~~~~~~l~~~i~~~~~~~~----------~~i~~~~~~~~~~~~~--~~~vi~f~~~~~  192 (408)
                      ||+++|+    +|+....+.|..+.+.+.++|.+.+....          ..+ +.++++.++...  ...+++|. +..
T Consensus        91 PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~i-t~~~l~~~l~~~~~~~vallF~-~~~  168 (519)
T 3t58_A           91 PTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPA-KLNDIDGFFTRNKADYLALVFE-RED  168 (519)
T ss_dssp             SEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBC-CHHHHTTGGGSCCCSEEEEEEE-CTT
T ss_pred             CEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcC-CHHHHHHHhccCCCCeEEEEec-CCc
Confidence            9999999    45556778888999999999999885322          333 557788877543  34445444 433


Q ss_pred             CcCHHHHHHHhccCCceeEEEe--cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCH-HHHHHHHhc
Q 015368          193 GMESEELAAASKLHSDVNFYQT--TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTR-LAIANFVTH  262 (408)
Q Consensus       193 ~~~~~~~~~~a~~~~~~~f~~~--~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~-~~i~~fi~~  262 (408)
                      ......+...-.....+.+..+  .+..++++|+|+   ++|+++++..++ +...++...+. ..+..++..
T Consensus       169 s~~~~~~~ldl~~~~~v~v~~v~~~~~~l~~kfgV~---~~Pslvl~~~nG-k~~~~~v~~~~r~~~~~~l~~  237 (519)
T 3t58_A          169 SYLGREVTLDLSQYHAVAVRRVLNTESDLVNKFGVT---DFPSCYLLLRNG-SVSRVPVLVESRSFYTSYLRG  237 (519)
T ss_dssp             CCHHHHHHHHTTTCTTEEEEEEETTCHHHHHHHTCC---CSSEEEEEETTS-CEEECCCSSCSHHHHHHHHTT
T ss_pred             hHHHHHHHHHhhccCCeeEEEecCchHHHHHHcCCC---CCCeEEEEeCCC-ceeecccccccHHHHHHHHHH
Confidence            3332222222233345666554  446899999999   489999998764 44344433322 556677664

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.88  E-value=5.3e-22  Score=151.85  Aligned_cols=105  Identities=25%  Similarity=0.424  Sum_probs=100.4

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      +.+..+++++|+..+.++++++|+||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++||++++.
T Consensus         4 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~   83 (109)
T 3tco_A            4 DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIFV   83 (109)
T ss_dssp             CCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             CeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEEc
Confidence            57789999999999988999999999999999999999999999999989999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|+.+.++.|..+.+.+.++|++.+
T Consensus        84 ~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           84 NGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             CCcEEEeeeccCCHHHHHHHHHHHh
Confidence            9999999999999999999998765

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.88  E-value=2.4e-22  Score=155.56  Aligned_cols=105  Identities=24%  Similarity=0.330  Sum_probs=96.2

Q ss_pred             cCCCcEEcChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           54 YAKDVVSLNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      ........+.++|++.+.  ++++++|+|||+||++|+.+.|.++++++++++ +.|+.||++++++++++|+|.++||+
T Consensus        10 ~~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~   88 (116)
T 3qfa_C           10 HGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKSMPTF   88 (116)
T ss_dssp             --CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCSSSEE
T ss_pred             CCcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCccccEE
Confidence            345666788999999887  899999999999999999999999999999985 99999999999999999999999999


Q ss_pred             EEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          132 YLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       132 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +++++|+.+.++.|. +.+.|.++|++.+
T Consensus        89 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           89 QFFKKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             EEESSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEeCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence            999999999999999 9999999998753

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.88  E-value=1.6e-22  Score=159.42  Aligned_cols=103  Identities=15%  Similarity=0.107  Sum_probs=92.7

Q ss_pred             cEEcC-hhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           58 VVSLN-GKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        58 ~~~l~-~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +..++ ..+|++.+  .++++|+|.|||+||+||+.+.|.++++++++++++.|++||+|++++++++|+|+++||+++|
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fF  102 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFF  102 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEE
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence            55564 58898766  3678999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eCCeEe--E-------EeeCCCC-HHHHHHHHHhHh
Q 015368          135 VAGVRQ--F-------QFFGERT-RDVISAWVREKM  160 (408)
Q Consensus       135 ~~g~~~--~-------~~~g~~~-~~~l~~~i~~~~  160 (408)
                      ++|+.+  .       +..|..+ .++|.++|+..+
T Consensus       103 k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~  138 (160)
T 2av4_A          103 YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIF  138 (160)
T ss_dssp             ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred             ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence            999776  4       7889887 999999998776

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.88  E-value=6.7e-22  Score=150.52  Aligned_cols=104  Identities=21%  Similarity=0.367  Sum_probs=98.3

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      ..+..++.++|+..+ ++++++|+||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++||+++++
T Consensus         3 ~~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   81 (106)
T 3die_A            3 MAIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFK   81 (106)
T ss_dssp             CCCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEEE
T ss_pred             cceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEEe
Confidence            367889999999988 8899999999999999999999999999999988999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|+.+.++.|..+.+++.++|++.+
T Consensus        82 ~G~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           82 DGQPVDKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             CCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            9999999999999999999998753

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=7.3e-22  Score=158.45  Aligned_cols=112  Identities=31%  Similarity=0.512  Sum_probs=103.9

Q ss_pred             cCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCC---cEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE---ADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      ....+..+++++|+..+.++++++|+||++||++|+.+.|.|.++++.+++.   +.++.||++++.+++++|+|.++||
T Consensus        15 ~~~~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt   94 (140)
T 2dj1_A           15 EENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPT   94 (140)
T ss_dssp             EETTEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSE
T ss_pred             CCCCCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCe
Confidence            4567899999999999988999999999999999999999999999999874   9999999999999999999999999


Q ss_pred             EEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCccc
Q 015368          131 LYLFVAGVRQFQFFGERTRDVISAWVREKMTLGTYS  166 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~  166 (408)
                      +++|++|+ +.++.|..+.+.|.+||.+.+.+....
T Consensus        95 ~~~~~~G~-~~~~~g~~~~~~l~~~l~~~~~~~~~~  129 (140)
T 2dj1_A           95 IKILKKGQ-AVDYDGSRTQEEIVAKVREVSQPDWTP  129 (140)
T ss_dssp             EEEEETTE-EEECCSCCCHHHHHHHHHHHHSSSCCC
T ss_pred             EEEEECCc-EEEcCCCCCHHHHHHHHHHhcCCCCCC
Confidence            99999997 788999999999999999999766543

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.88  E-value=8.7e-22  Score=150.47  Aligned_cols=105  Identities=21%  Similarity=0.402  Sum_probs=98.2

Q ss_pred             CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +.+..+++++|+..+ .++++++|+||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++||++++
T Consensus         2 ~~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             CcceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEE
Confidence            467889999999655 6789999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++|+.+.++.|..+.+.+.+|+++.+
T Consensus        82 ~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           82 KNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            99999999999999999999998875

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.88  E-value=6.8e-22  Score=150.24  Aligned_cols=103  Identities=21%  Similarity=0.420  Sum_probs=97.0

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG  137 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g  137 (408)
                      +..+++++|+..+.++++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++||++++++|
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G   81 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGG   81 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETT
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEEeCC
Confidence            56889999998888899999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             eEeEEeeCCCCHHHHHHHHHhHh
Q 015368          138 VRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       138 ~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +.+.++.|..+.+.+.+++.+.+
T Consensus        82 ~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           82 RPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEEEEEESCCCHHHHHHHTTTTT
T ss_pred             eEEEEEecCCCHHHHHHHHHHHh
Confidence            98899999999999999987654

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.87  E-value=1.8e-21  Score=151.48  Aligned_cols=111  Identities=24%  Similarity=0.354  Sum_probs=100.9

Q ss_pred             CCccCCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCc
Q 015368           51 PLLYAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYP  129 (408)
Q Consensus        51 ~~~~~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~P  129 (408)
                      +....+.+..+++++|++.+ .++++++|+||++||++|+.+.|.+.++++.+++++.++.||++++++++++|+|.++|
T Consensus         8 ~~~~~~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~P   87 (119)
T 1w4v_A            8 HHHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVP   87 (119)
T ss_dssp             --CCCSEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSS
T ss_pred             ccCCceEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCccc
Confidence            34455788899999999765 67899999999999999999999999999999888999999999999999999999999


Q ss_pred             EEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          130 TLYLFVAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       130 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ++++|++|+.+.++.|..+.+.|.+||++.++
T Consensus        88 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           88 TVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence            99999999988999999999999999988763

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.87  E-value=1.4e-21  Score=156.57  Aligned_cols=107  Identities=21%  Similarity=0.371  Sum_probs=100.6

Q ss_pred             CCCcEEcChhhHH-HHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           55 AKDVVSLNGKNFS-EFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        55 ~~~~~~l~~~~~~-~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      ...+..+++++|. ..+.++++++|+||++||++|+.+.|.+.++++.+++++.|+.||++++++++++|+|.++||+++
T Consensus         5 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~   84 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKF   84 (140)
T ss_dssp             TTTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEE
T ss_pred             CcceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEE
Confidence            3578899999999 566778999999999999999999999999999999889999999999999999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      |++|+.+.++.|..+.+.|.+||.+.+.
T Consensus        85 ~~~G~~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           85 FCHGRPVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             EETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             EeCCcEEEEEcCCCCHHHHHHHHHHHhc
Confidence            9999999999999999999999998874

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.87  E-value=2e-21  Score=148.53  Aligned_cols=105  Identities=24%  Similarity=0.438  Sum_probs=99.0

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~  136 (408)
                      .+..+++++|+..+.++++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|++.++|++++|++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   81 (109)
T 2yzu_A            2 KPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKD   81 (109)
T ss_dssp             CCEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             cceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeC
Confidence            57789999999888889999999999999999999999999999998889999999999999999999999999999999


Q ss_pred             CeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          137 GVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       137 g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      |+.+.++.|..+.+.+.+|+.+.++
T Consensus        82 g~~~~~~~g~~~~~~l~~~l~~~l~  106 (109)
T 2yzu_A           82 GQPVEVLVGAQPKRNYQAKIEKHLP  106 (109)
T ss_dssp             TEEEEEEESCCCHHHHHHHHHTTC-
T ss_pred             CcEeeeEeCCCCHHHHHHHHHHHhh
Confidence            9888999999999999999998764

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=1.9e-21  Score=154.50  Aligned_cols=107  Identities=36%  Similarity=0.584  Sum_probs=100.0

Q ss_pred             CCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhc----CCcEEEEEeCcccHhHHHHcCCCcCc
Q 015368           55 AKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK----GEADLVMVDAYLEKDLAKEYNILAYP  129 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~v~~~~v~~~~~~~~~~~~~i~~~P  129 (408)
                      ...+..++.++|+..+ .++++++|+|||+||++|+.+.|.+.++++.++    +++.|+.||++++++++++|+|.++|
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~P   85 (133)
T 1x5d_A            6 SGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFP   85 (133)
T ss_dssp             CCSCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSS
T ss_pred             CCcCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeC
Confidence            4578899999999876 678999999999999999999999999999997    68999999999999999999999999


Q ss_pred             EEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          130 TLYLFVAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       130 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      |+++|++|+.+.++.|..+.+.+.+|+.+.+.
T Consensus        86 t~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           86 TIKIFQKGESPVDYDGGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             EEEEEETTEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCceEEecCCCCHHHHHHHHHHHhh
Confidence            99999999888999999999999999998874

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.87  E-value=3.3e-21  Score=148.27  Aligned_cols=106  Identities=19%  Similarity=0.390  Sum_probs=98.3

Q ss_pred             CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      ..+..+++++|...+ .++++++|.||++||++|+.+.|.+.++++.+++++.++.||++++++++++|+|.++||++++
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   84 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVY   84 (112)
T ss_dssp             CCCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEE
Confidence            467889999998655 6789999999999999999999999999999987899999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ++|+.+.++.|..+.+.+.+++++.+.
T Consensus        85 ~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           85 QGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             eCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            999999999999999999999988763

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.87  E-value=3.8e-21  Score=147.07  Aligned_cols=102  Identities=25%  Similarity=0.364  Sum_probs=94.5

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~  136 (408)
                      .....+.++|+..+.++++++|+|||+||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|.++||++++++
T Consensus         8 ~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~   86 (109)
T 3f3q_A            8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-QADFYKLDVDELGDVAQKNEVSAMPTLLLFKN   86 (109)
T ss_dssp             CEECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ccCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCccCEEEEEEC
Confidence            44567889999999999999999999999999999999999999997 59999999999999999999999999999999


Q ss_pred             CeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          137 GVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       137 g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      |+.+.++.|. +.+.|.++|++++
T Consensus        87 G~~~~~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           87 GKEVAKVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             TEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             CEEEEEEeCC-CHHHHHHHHHhhC
Confidence            9999999999 7799999998753

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.87  E-value=1.1e-21  Score=168.52  Aligned_cols=116  Identities=20%  Similarity=0.418  Sum_probs=108.1

Q ss_pred             cCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      ....+..+++++|+..+.++++++|+|||+||++|+.+.|.|+++++.+++++.|+.|||++++++|++|+|.++||+++
T Consensus        95 ~~~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~  174 (210)
T 3apq_A           95 DDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFI  174 (210)
T ss_dssp             TCTTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCCceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEE
Confidence            34578899999999988889999999999999999999999999999998889999999999999999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccccC
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKMTLGTYSITT  169 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~  169 (408)
                      |.+|+.+.++.|..+.+.|.+||.+.+.+.+.+|++
T Consensus       175 ~~~G~~~~~~~G~~~~~~l~~~i~~~l~~~~~~i~~  210 (210)
T 3apq_A          175 FRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELST  210 (210)
T ss_dssp             ECTTSCCEECCSCCCHHHHHHHHHHHHHCCSSCC--
T ss_pred             EECCCceeEecCCCCHHHHHHHHHHhCcccceecCC
Confidence            999988999999999999999999999988888753

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.87  E-value=3e-21  Score=147.12  Aligned_cols=104  Identities=21%  Similarity=0.400  Sum_probs=97.4

Q ss_pred             CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +.+..+++++|+..+ .++++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++|++++|
T Consensus         2 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLV   81 (107)
T ss_dssp             CCEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEE
T ss_pred             CceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEE
Confidence            468899999999765 6789999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                      ++|+.+.++.|..+.+.+.+||++.
T Consensus        82 ~~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           82 RDGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             eCCEEEEEecCCCCHHHHHHHHHhc
Confidence            9999899999999999999999875

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.87  E-value=2.8e-21  Score=148.39  Aligned_cols=103  Identities=28%  Similarity=0.524  Sum_probs=96.8

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      +.+..+++++|++.+. +++++|+||++||++|+.+.|.+.++++.+..   ++.++.||++++++++++|+|.++||++
T Consensus         5 ~~v~~l~~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~   83 (111)
T 3uvt_A            5 STVLALTENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLL   83 (111)
T ss_dssp             CCSEECCTTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CcceEcChhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEE
Confidence            5788999999999887 78999999999999999999999999998753   7999999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                      ++++|+.+.++.|..+.+.|.+||+++
T Consensus        84 ~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           84 LFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             EEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            999999999999999999999999875

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.87  E-value=5e-21  Score=147.92  Aligned_cols=106  Identities=19%  Similarity=0.330  Sum_probs=99.6

Q ss_pred             CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +.+..+++++|+..+ .++++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++|+++++
T Consensus         7 ~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   86 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV   86 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEEE
Confidence            468899999999765 6789999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ++|+.+.++.|..+.+.+.+|+++.++
T Consensus        87 ~~G~~~~~~~g~~~~~~l~~~l~~~l~  113 (115)
T 1thx_A           87 KGEQILDSTEGVISKDKLLSFLDTHLN  113 (115)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             cCCEEEEEecCCCCHHHHHHHHHHHhc
Confidence            999988999999999999999998875

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.87  E-value=3.9e-21  Score=145.56  Aligned_cols=103  Identities=24%  Similarity=0.448  Sum_probs=97.1

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG  137 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g  137 (408)
                      +..+++++|++.+.++++++|.||++||++|+.+.|.++++++.+++ +.++.||++++++++++|++.++||++++++|
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g   79 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTVIFFKDG   79 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEEEEEETT
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEEEEEECC
Confidence            45789999999888899999999999999999999999999999986 99999999999999999999999999999999


Q ss_pred             eEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          138 VRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       138 ~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      +.+.++.|..+.+.+.+|+++.++
T Consensus        80 ~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           80 EPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             EEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             eEhhhccCCCCHHHHHHHHHHHhc
Confidence            888999999999999999998764

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.86  E-value=2.8e-21  Score=155.01  Aligned_cols=132  Identities=21%  Similarity=0.249  Sum_probs=84.9

Q ss_pred             CccccccChhhhhhhccCCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcE
Q 015368           28 SHEDLKAEPDELELTNLNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD  107 (408)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~  107 (408)
                      +|...+.++.........++.+.+..  +.+..+++++|+..+.+++.++|+||++||++|+.+.|.++++++.+++++.
T Consensus         7 ~~~~~~~~~~~r~~~~~~~~~c~~~~--~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~   84 (140)
T 1v98_A            7 KCGAKNRLGTPPPGQVPVCGACKTPL--PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLK   84 (140)
T ss_dssp             --------------------------------------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEE
T ss_pred             cccccccCCcccccCCcccccccCCC--CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceE
Confidence            34555666655554444444433322  6788999999998875554599999999999999999999999999988899


Q ss_pred             EEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          108 LVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       108 ~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      |+.||++++++++++|+|.++||+++|++|+.+.++.|..+.+.+.+||.+.+.
T Consensus        85 ~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~  138 (140)
T 1v98_A           85 VVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVATWVGASPRRVLEERLRPYLE  138 (140)
T ss_dssp             EEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEEEEeCCCCHHHHHHHHHHHHc
Confidence            999999999999999999999999999999989999999999999999998874

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.86  E-value=2.1e-21  Score=152.91  Aligned_cols=105  Identities=21%  Similarity=0.405  Sum_probs=98.4

Q ss_pred             CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      ..+..++.++|+..+ .++++++|+||++||++|+.+.|.++++++.+++++.|+.||++++++++++|+|.++||+++|
T Consensus        22 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~  101 (128)
T 2o8v_B           22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF  101 (128)
T ss_dssp             CCSEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEE
T ss_pred             cccEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEE
Confidence            468899999999654 6789999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++|+.+.++.|..+.++|.+||++.+
T Consensus       102 ~~G~~~~~~~G~~~~~~l~~~l~~~l  127 (128)
T 2o8v_B          102 KNGEVAATKVGALSKGQLKEFLDANL  127 (128)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             eCCEEEEEEcCCCCHHHHHHHHHHhh
Confidence            99998999999999999999998875

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.86  E-value=4.3e-21  Score=146.27  Aligned_cols=104  Identities=23%  Similarity=0.383  Sum_probs=96.8

Q ss_pred             CcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      .+..+++++|+..+ .++++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++||+++++
T Consensus         2 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   81 (107)
T 1dby_A            2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFK   81 (107)
T ss_dssp             CCEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEES
T ss_pred             ccEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEe
Confidence            36788999999765 67899999999999999999999999999999888999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|+.+.++.|..+.+.+.+++++.+
T Consensus        82 ~G~~~~~~~G~~~~~~l~~~l~~~l  106 (107)
T 1dby_A           82 GGKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SSSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             CCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            9988899999999999999998765

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=3.8e-21  Score=151.27  Aligned_cols=110  Identities=25%  Similarity=0.424  Sum_probs=99.6

Q ss_pred             CCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      ...+..+++++|++.+.+  .++|+|||+||++|+.+.|.++++++.+++ ++.|+.||++++++++++|+|.++||+++
T Consensus         6 ~~~v~~l~~~~f~~~~~~--~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~   83 (126)
T 1x5e_A            6 SGNVRVITDENWRELLEG--DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYH   83 (126)
T ss_dssp             CCSEEECCTTTHHHHTSS--EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCccEEecHHHHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEE
Confidence            357889999999987743  399999999999999999999999999986 89999999999999999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcccc
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKMTLGTYSI  167 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i  167 (408)
                      |++|+ +.++.|..+.+.|.+||.+.+...+..+
T Consensus        84 ~~~G~-~~~~~G~~~~~~l~~~l~~~~~~~~~~~  116 (126)
T 1x5e_A           84 CKDGE-FRRYQGPRTKKDFINFISDKEWKSIEPV  116 (126)
T ss_dssp             EETTE-EEECCSCCCHHHHHHHHHTCGGGGSCEE
T ss_pred             EeCCe-EEEeecCCCHHHHHHHHHHHhhccCCCc
Confidence            99996 6889999999999999999887665554

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.86  E-value=6e-22  Score=150.52  Aligned_cols=97  Identities=9%  Similarity=0.116  Sum_probs=79.9

Q ss_pred             hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEE
Q 015368           63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQ  142 (408)
Q Consensus        63 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~  142 (408)
                      .++|++.+.++++++|+|||+||++|+.+.|.++++++.++ ++.++.||++++++++++|+|.++||+++|++|+.+.+
T Consensus         8 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~   86 (105)
T 4euy_A            8 IEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEILR   86 (105)
T ss_dssp             --CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEECCC---------CCCCEEEEEETTEEEEE
T ss_pred             HHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeEEEE
Confidence            45566666788999999999999999999999999999985 79999999999999999999999999999999999999


Q ss_pred             eeCCCCHHHHHHHHHhHh
Q 015368          143 FFGERTRDVISAWVREKM  160 (408)
Q Consensus       143 ~~g~~~~~~l~~~i~~~~  160 (408)
                      +.|..+.++|.+++++.+
T Consensus        87 ~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           87 ESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EESSCCHHHHHHHHHTTC
T ss_pred             EeCCcCHHHHHHHHHHhh
Confidence            999999999999998764

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.86  E-value=9.4e-21  Score=144.41  Aligned_cols=102  Identities=23%  Similarity=0.286  Sum_probs=91.1

Q ss_pred             cEEc-ChhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           58 VVSL-NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        58 ~~~l-~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +..+ +.++|++.+  .++++++|+|||+||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|.++||++++
T Consensus         3 v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   81 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGTAATNNISATPTFQFF   81 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEEEEE
T ss_pred             eEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHhcCCCcccEEEEE
Confidence            3444 568899888  578999999999999999999999999999994 799999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ++|+.+.++.|.. .++|.+||++.++
T Consensus        82 ~~G~~~~~~~G~~-~~~l~~~l~~~lg  107 (107)
T 1gh2_A           82 RNKVRIDQYQGAD-AVGLEEKIKQHLE  107 (107)
T ss_dssp             ETTEEEEEEESSC-HHHHHHHHHHHHC
T ss_pred             ECCeEEEEEeCCC-HHHHHHHHHHhcC
Confidence            9999899999964 4569999988763

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.86  E-value=1.2e-20  Score=147.77  Aligned_cols=104  Identities=18%  Similarity=0.306  Sum_probs=96.8

Q ss_pred             CCcEEcCh-hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNG-KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~-~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      ..+..++. ++|++.+.++++++|+|||+||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|.++||++++
T Consensus        19 ~mv~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~   97 (125)
T 1r26_A           19 PSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIA   97 (125)
T ss_dssp             SCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cceEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECCCCHHHHHHcCCCcccEEEEE
Confidence            45889998 9999999889999999999999999999999999999985 799999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ++|+.+.++.| .+.+.|.++|.+.+.
T Consensus        98 ~~G~~~~~~~G-~~~~~l~~~l~~~l~  123 (125)
T 1r26_A           98 RSGKMLGHVIG-ANPGMLRQKLRDIIK  123 (125)
T ss_dssp             ETTEEEEEEES-SCHHHHHHHHHHHHH
T ss_pred             eCCeEEEEEeC-CCHHHHHHHHHHHhc
Confidence            99998899999 688999999988763

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.86  E-value=9.8e-21  Score=143.73  Aligned_cols=103  Identities=26%  Similarity=0.462  Sum_probs=95.8

Q ss_pred             cEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368           58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        58 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~  136 (408)
                      +..+++++|+..+ .++++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++||++++++
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   81 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKN   81 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeC
Confidence            5678999999866 567899999999999999999999999999998889999999999999999999999999999999


Q ss_pred             CeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          137 GVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       137 g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      |+.+.++.|..+.+.+.++|++.+
T Consensus        82 g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           82 GERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             TEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             CeEEEEEecCCCHHHHHHHHHhhC
Confidence            999999999999999999998753

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.86  E-value=1e-20  Score=150.85  Aligned_cols=107  Identities=23%  Similarity=0.369  Sum_probs=97.8

Q ss_pred             CCCcEEcChhhHHHHHc------------CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHH
Q 015368           55 AKDVVSLNGKNFSEFMG------------KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE  122 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~------------~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~  122 (408)
                      ...+..++.++|...+.            ++++++|+|||+||++|+.+.|.++++++.+++++.++.||++++++++++
T Consensus         8 ~~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~   87 (136)
T 2l5l_A            8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGA   87 (136)
T ss_dssp             TTSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH
T ss_pred             CCceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHH
Confidence            34688999999998774            468999999999999999999999999999988899999999999999999


Q ss_pred             cCCCcCcEEEEE-eCCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          123 YNILAYPTLYLF-VAGVRQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       123 ~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      |+|.++||+++| .+|+.+ ++.|..+.+.|.+||++.++.
T Consensus        88 ~~v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           88 FGIRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             TTCCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHTS
T ss_pred             cCCCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhc
Confidence            999999999999 589665 889999999999999998754

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.86  E-value=1.2e-20  Score=145.16  Aligned_cols=104  Identities=24%  Similarity=0.416  Sum_probs=95.5

Q ss_pred             CcEEc-ChhhHHHHHcC----CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           57 DVVSL-NGKNFSEFMGK----NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        57 ~~~~l-~~~~~~~~~~~----~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      .+..+ +.++|++.+..    +++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++||+
T Consensus         3 ~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   82 (112)
T 1ep7_A            3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF   82 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred             cEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEE
Confidence            46667 57889988864    89999999999999999999999999999987899999999999999999999999999


Q ss_pred             EEEeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          132 YLFVAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       132 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      +++++|+.+.++.|. +.+.+.++|++.+.
T Consensus        83 ~~~~~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           83 HVYKDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             EEEECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence            999999988999998 99999999988763

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.86  E-value=5e-21  Score=151.46  Aligned_cols=107  Identities=28%  Similarity=0.466  Sum_probs=98.2

Q ss_pred             cCCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           54 YAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      ....+..++.++|+..+ .++++++|+||++||++|+.+.|.++++++.+++.+.|+.||++++++++++|+|.++||++
T Consensus        15 ~~~~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~   94 (130)
T 2dml_A           15 SSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIK   94 (130)
T ss_dssp             TTSSSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEE
T ss_pred             CCCCcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEE
Confidence            34678999999999855 67899999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEeCCeE-eEEeeCCCCHHHHHHHHHhHh
Q 015368          133 LFVAGVR-QFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       133 ~~~~g~~-~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|++|.. +.++.|..+.+.+.+|+.+.+
T Consensus        95 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~l  123 (130)
T 2dml_A           95 IFGANKNKPEDYQGGRTGEAIVDAALSAL  123 (130)
T ss_dssp             EESSCTTSCEECCSCCSHHHHHHHHHHHH
T ss_pred             EEeCCCCeEEEeecCCCHHHHHHHHHHHH
Confidence            9996644 789999999999999999876

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.85  E-value=6.5e-21  Score=153.07  Aligned_cols=108  Identities=20%  Similarity=0.404  Sum_probs=96.3

Q ss_pred             ccCCCcEEcChhhHHHHHc------------CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH
Q 015368           53 LYAKDVVSLNGKNFSEFMG------------KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA  120 (408)
Q Consensus        53 ~~~~~~~~l~~~~~~~~~~------------~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~  120 (408)
                      .....+..++..+|...+.            ++++++|+||++||++|+.+.|.+.++++.+++++.++.||++++++++
T Consensus        19 ~~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   98 (141)
T 3hxs_A           19 KPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPELA   98 (141)
T ss_dssp             ----CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH
T ss_pred             CCCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHHH
Confidence            3456889999999998875            3799999999999999999999999999999989999999999999999


Q ss_pred             HHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          121 KEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       121 ~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ++|+|.++||+++|+ +|+. .++.|..+.+.|.++|++.+.
T Consensus        99 ~~~~v~~~Pt~~~~~~~g~~-~~~~G~~~~~~l~~~l~~~l~  139 (141)
T 3hxs_A           99 RDFGIQSIPTIWFVPMKGEP-QVNMGALSKEQLKGYIDKVLL  139 (141)
T ss_dssp             HHTTCCSSSEEEEECSSSCC-EEEESCCCHHHHHHHHHHTTC
T ss_pred             HHcCCCCcCEEEEEeCCCCE-EEEeCCCCHHHHHHHHHHHHc
Confidence            999999999999996 7754 489999999999999998764

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.85  E-value=1.2e-21  Score=152.68  Aligned_cols=109  Identities=37%  Similarity=0.623  Sum_probs=101.1

Q ss_pred             CCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      .+.+..++.++|+..+.++++++|.||++||++|+.+.|.+.++++.+++   ++.++.||++++++++++|+|.++||+
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~   85 (120)
T 1mek_A            6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEE
T ss_pred             CCCcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEE
Confidence            35788999999999998899999999999999999999999999999874   799999999999999999999999999


Q ss_pred             EEEeCCeEe--EEeeCCCCHHHHHHHHHhHhCCC
Q 015368          132 YLFVAGVRQ--FQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       132 ~~~~~g~~~--~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                      ++|++|+.+  .++.|..+.+.|.+|+++.++++
T Consensus        86 ~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~~  119 (120)
T 1mek_A           86 KFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             EEEeCCCcCCcccccCccCHHHHHHHHHhccCCC
Confidence            999999766  89999999999999999988765

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.85  E-value=1.1e-20  Score=145.21  Aligned_cols=103  Identities=19%  Similarity=0.377  Sum_probs=96.7

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      +....++.++|++.+.++++++|+||++||++|+.+.|.++++++.++ ++.++.||++++++++++|+|.++||+++++
T Consensus         9 ~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~   87 (112)
T 1syr_A            9 MVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYK   87 (112)
T ss_dssp             CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHHHHHHTTCCSSSEEEEEE
T ss_pred             eEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCCHHHHHHcCCCcccEEEEEE
Confidence            567789999999999899999999999999999999999999999987 6999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|+.+.++.|. +.+.|.++|++.+
T Consensus        88 ~G~~~~~~~G~-~~~~l~~~l~~~l  111 (112)
T 1syr_A           88 NGSSVDTLLGA-NDSALKQLIEKYA  111 (112)
T ss_dssp             TTEEEEEEESC-CHHHHHHHHHTTC
T ss_pred             CCcEEEEEeCC-CHHHHHHHHHHhh
Confidence            99988999999 9999999998754

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.85  E-value=8.6e-21  Score=148.07  Aligned_cols=107  Identities=20%  Similarity=0.374  Sum_probs=98.1

Q ss_pred             cCCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           54 YAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      ....+..++.++|...+ .++++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++||++
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~   89 (121)
T 2i1u_A           10 EKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLI   89 (121)
T ss_dssp             --CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             hcccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEE
Confidence            34578899999998654 67899999999999999999999999999999888999999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++++|+.+.++.|..+.+.+.++|.+.+
T Consensus        90 ~~~~g~~~~~~~G~~~~~~l~~~l~~~l  117 (121)
T 2i1u_A           90 LFKDGQPVKRIVGAKGKAALLRELSDVV  117 (121)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHTCSCC
T ss_pred             EEECCEEEEEecCCCCHHHHHHHHHHHH
Confidence            9999998899999999999999998765

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.85  E-value=1.7e-20  Score=144.06  Aligned_cols=104  Identities=21%  Similarity=0.331  Sum_probs=94.9

Q ss_pred             CCCcEEcChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-ccHhHHHHcCCCcCcEE
Q 015368           55 AKDVVSLNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYNILAYPTL  131 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-~~~~~~~~~~i~~~Pt~  131 (408)
                      ...+..++.++|+..+.  ++++++|+||++||++|+.+.|.++++++.++ ++.++.||++ ++++++++|+|.++||+
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~~~~~~~~v~~~Pt~   82 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTF   82 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSBSSEE
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-CeEEEEEecCcchHHHHHHcCCCeeeEE
Confidence            35788999999998885  58999999999999999999999999999987 5999999998 78999999999999999


Q ss_pred             EEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          132 YLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       132 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +++++|+.+.++.|.. .+.|.++|++.+
T Consensus        83 ~~~~~G~~~~~~~G~~-~~~l~~~l~~~~  110 (111)
T 2pu9_C           83 KILKENSVVGEVTGAK-YDKLLEAIQAAR  110 (111)
T ss_dssp             EEESSSSEEEEEESSC-HHHHHHHHHHHH
T ss_pred             EEEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence            8888998888999984 899999998764

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.85  E-value=8.8e-21  Score=155.13  Aligned_cols=111  Identities=11%  Similarity=0.212  Sum_probs=97.4

Q ss_pred             CCCcEEcChhhHHHHHcC--CCcEEEEEec-------CCChhHHhhhHHHHHHHHHhc-----CCcEEEEEeCcccHhHH
Q 015368           55 AKDVVSLNGKNFSEFMGK--NRNVMVMFYA-------NWCYWSKKLAPEFAAAAKMLK-----GEADLVMVDAYLEKDLA  120 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~~--~~~~~v~f~a-------~wC~~C~~~~p~~~~~~~~~~-----~~v~~~~v~~~~~~~~~  120 (408)
                      ...++.||+.+|++.+.+  +.+++|.|||       +||++|+.+.|+|+++++++.     +++.|++||++++++++
T Consensus        17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la   96 (178)
T 3ga4_A           17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV   96 (178)
T ss_dssp             TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH
T ss_pred             cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH
Confidence            357899999999988753  4589999999       499999999999999999998     78999999999999999


Q ss_pred             HHcCCCcCcEEEEEeCCeEe------------EEe---eC-CCCHHHHHHHHHhHhCCCcc
Q 015368          121 KEYNILAYPTLYLFVAGVRQ------------FQF---FG-ERTRDVISAWVREKMTLGTY  165 (408)
Q Consensus       121 ~~~~i~~~Pt~~~~~~g~~~------------~~~---~g-~~~~~~l~~~i~~~~~~~~~  165 (408)
                      ++|||+++||+++|++|...            .+|   .| .++++.|.+||.+.++..+.
T Consensus        97 ~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i~  157 (178)
T 3ga4_A           97 KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISIT  157 (178)
T ss_dssp             HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCCC
T ss_pred             HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCcc
Confidence            99999999999999977422            345   35 89999999999999986653

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.85  E-value=5.4e-21  Score=149.45  Aligned_cols=107  Identities=27%  Similarity=0.448  Sum_probs=96.3

Q ss_pred             CCcEEcChhhHHH-HHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNGKNFSE-FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~~~~~~-~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +.+..++.++|.. .+.++++++|+|||+||++|+.+.|.++++++.+++++.|+.||++++++++++|+|.++||+++|
T Consensus         3 ~~v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~   82 (122)
T 3aps_A            3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY   82 (122)
T ss_dssp             CCSEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             cchhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEE
Confidence            4688999999964 557889999999999999999999999999999988899999999999999999999999999999


Q ss_pred             eCCeEeEEeeCC----CCHHHHHHHHHhHhCC
Q 015368          135 VAGVRQFQFFGE----RTRDVISAWVREKMTL  162 (408)
Q Consensus       135 ~~g~~~~~~~g~----~~~~~l~~~i~~~~~~  162 (408)
                      ++|..+.++.|.    .+.+.|.+|+.+.+..
T Consensus        83 ~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~  114 (122)
T 3aps_A           83 QYERAKKSIWEEQINSRDAKTIAALIYGKLET  114 (122)
T ss_dssp             EEEGGGTEEEEEEECCSCHHHHHHHHHHHHHC
T ss_pred             eCCCccceeeccccCcCCHHHHHHHHHHHHHh
Confidence            865456777775    8999999999988743

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.85  E-value=2.8e-20  Score=145.42  Aligned_cols=104  Identities=22%  Similarity=0.322  Sum_probs=96.0

Q ss_pred             CCcEEcChhhHHHHHc----CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           56 KDVVSLNGKNFSEFMG----KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      ..+..++.++|+..+.    ++++++|.||++||++|+.+.|.++++++.+++ +.|+.||++++++++++|+|.++||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~   91 (122)
T 2vlu_A           13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTF   91 (122)
T ss_dssp             CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCcccEE
Confidence            4567789999998774    589999999999999999999999999999985 99999999999999999999999999


Q ss_pred             EEEeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          132 YLFVAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       132 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      +++++|+.+.++.|.. .+.+.+||++.+.
T Consensus        92 ~~~~~G~~~~~~~G~~-~~~l~~~l~~~l~  120 (122)
T 2vlu_A           92 LFMKEGDVKDRVVGAI-KEELTAKVGLHAA  120 (122)
T ss_dssp             EEEETTEEEEEEESSC-HHHHHHHHHHHHS
T ss_pred             EEEeCCEEEEEEeCcC-HHHHHHHHHHHhc
Confidence            9999999899999999 9999999998774

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.7e-20  Score=144.22  Aligned_cols=102  Identities=16%  Similarity=0.295  Sum_probs=89.8

Q ss_pred             cEEcCh-hhHHHHHcC---CCcEEEEEecCCChhHHhhhHHHHHHHHHhc-CCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           58 VVSLNG-KNFSEFMGK---NRNVMVMFYANWCYWSKKLAPEFAAAAKMLK-GEADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        58 ~~~l~~-~~~~~~~~~---~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~-~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      +..++. ++|++.+.+   +++++|+|||+||++|+.+.|.++++++.++ .++.++.||++++++++++|+|.++||++
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   81 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEISAVPYFI   81 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCCcccEEE
Confidence            566776 899988865   8999999999999999999999999999963 37999999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++++|+.+.++.|.. .++|.++|++.+
T Consensus        82 ~~~~G~~~~~~~G~~-~~~l~~~l~~~~  108 (112)
T 3d6i_A           82 IIHKGTILKELSGAD-PKEYVSLLEDCK  108 (112)
T ss_dssp             EEETTEEEEEECSCC-HHHHHHHHHHHH
T ss_pred             EEECCEEEEEecCCC-HHHHHHHHHHHH
Confidence            999999999999984 556999998775

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.85  E-value=2.6e-20  Score=141.64  Aligned_cols=101  Identities=22%  Similarity=0.418  Sum_probs=92.9

Q ss_pred             cEEcCh-hhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           58 VVSLNG-KNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        58 ~~~l~~-~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      +..++. ++|+..+.  ++++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|++.++||++++
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~   81 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFL   81 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEE
Confidence            456766 88988886  789999999999999999999999999999977899999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                      ++|+.+.++.| .+.+.+.++|++.
T Consensus        82 ~~G~~~~~~~g-~~~~~l~~~i~~~  105 (106)
T 1xwb_A           82 KNGVKVEEFAG-ANAKRLEDVIKAN  105 (106)
T ss_dssp             ETTEEEEEEES-CCHHHHHHHHHHT
T ss_pred             cCCcEEEEEcC-CCHHHHHHHHHHh
Confidence            99998999999 7899999999865

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.85  E-value=7.8e-21  Score=153.61  Aligned_cols=100  Identities=14%  Similarity=0.161  Sum_probs=92.8

Q ss_pred             cChhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe
Q 015368           61 LNGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        61 l~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      .+.++|+..+  .++++++|+|||+||++|+.+.|.++++++++++++.++.||++++++++++|+|.++||++++++|+
T Consensus         9 ~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~   88 (149)
T 3gix_A            9 TSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQ   88 (149)
T ss_dssp             CSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTE
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEEECCe
Confidence            4678899877  56899999999999999999999999999999878999999999999999999999999999999998


Q ss_pred             Ee---------EEeeC-CCCHHHHHHHHHhHh
Q 015368          139 RQ---------FQFFG-ERTRDVISAWVREKM  160 (408)
Q Consensus       139 ~~---------~~~~g-~~~~~~l~~~i~~~~  160 (408)
                      .+         .++.| ..+.++|.+++++..
T Consensus        89 ~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~  120 (149)
T 3gix_A           89 HMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIY  120 (149)
T ss_dssp             EEEEECSSSCCSCEESCCSSHHHHHHHHHHHH
T ss_pred             EEEeecCCCCCCeEeeecCCHHHHHHHHHHHH
Confidence            88         89999 899999999998775

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.85  E-value=2.8e-21  Score=152.45  Aligned_cols=98  Identities=17%  Similarity=0.242  Sum_probs=89.5

Q ss_pred             cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368           61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ  140 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~  140 (408)
                      ++++.++....++++++|+|||+||++|+++.|.++++++.+++++.++.||++++++++++|+|.++||++++++|+.+
T Consensus        30 ~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~  109 (128)
T 3ul3_B           30 NGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKTML  109 (128)
T ss_dssp             CCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCEEE
Confidence            34444445556789999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             EEeeCCCCHHHHHHHHHh
Q 015368          141 FQFFGERTRDVISAWVRE  158 (408)
Q Consensus       141 ~~~~g~~~~~~l~~~i~~  158 (408)
                      .++.|..+.++|.+||++
T Consensus       110 ~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B          110 ARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             EEESSCCCHHHHHHHHTT
T ss_pred             EEecCCCCHHHHHHHHHh
Confidence            999999999999999875

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.85  E-value=3e-20  Score=141.05  Aligned_cols=97  Identities=25%  Similarity=0.387  Sum_probs=90.5

Q ss_pred             ChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368           62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        62 ~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      +.++|+..+.  ++++++|.||++||++|+.+.|.++++++.+++ +.++.||++++++++++|+|.++||++++++|+.
T Consensus         7 ~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~   85 (105)
T 3m9j_A            7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTFQFFKKGQK   85 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEE
T ss_pred             CHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEEEEEECCeE
Confidence            5678888886  789999999999999999999999999999975 9999999999999999999999999999999999


Q ss_pred             eEEeeCCCCHHHHHHHHHhHh
Q 015368          140 QFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       140 ~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +.++.|. +.+.+.+++++.+
T Consensus        86 ~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           86 VGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEEEESS-CHHHHHHHHHHHC
T ss_pred             EEEEeCC-CHHHHHHHHHHhC
Confidence            9999999 9999999998753

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.84  E-value=1.9e-20  Score=162.22  Aligned_cols=112  Identities=20%  Similarity=0.361  Sum_probs=103.4

Q ss_pred             CccCCCcEEcChhhHHHH-HcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           52 LLYAKDVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        52 ~~~~~~~~~l~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      ......+..+|.++|+.. +.++++++|+|||+||++|+.+.|.++++++.+++++.++.||++++++++++|+|.++||
T Consensus         8 ~~~~~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt   87 (222)
T 3dxb_A            8 HPMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPT   87 (222)
T ss_dssp             -CCSCCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSE
T ss_pred             CCCCCCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCE
Confidence            345578899999999975 5788999999999999999999999999999999889999999999999999999999999


Q ss_pred             EEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCC
Q 015368          131 LYLFVAGVRQFQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                      ++++++|+.+.++.|..+.+.+.+|+++.+...
T Consensus        88 ~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~  120 (222)
T 3dxb_A           88 LLLFKNGEVAATKVGALSKGQLKEFLDANLAGS  120 (222)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHHHHHSCCS
T ss_pred             EEEEECCeEEEEeccccChHHHHHHHHhhcccc
Confidence            999999999999999999999999999998543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.84  E-value=1.5e-20  Score=169.72  Aligned_cols=107  Identities=22%  Similarity=0.405  Sum_probs=101.0

Q ss_pred             CCCcEEcChhhHHHHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           55 AKDVVSLNGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      .+.+..+|.++|+..+..  +++++|+|||+||++|+.+.|.++++++++++++.|+.|||+++++++++|+|.++||++
T Consensus         6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~   85 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVY   85 (287)
T ss_dssp             CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEEE
T ss_pred             CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeEE
Confidence            357899999999998854  799999999999999999999999999999988999999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      +|++|+.+.++.|..+.+.+..|+.+.++
T Consensus        86 ~~~~G~~~~~~~g~~~~~~l~~~l~~~lp  114 (287)
T 3qou_A           86 LFQNGQPVDGFQGPQPEEAIRALLDXVLP  114 (287)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHSC
T ss_pred             EEECCEEEEEeeCCCCHHHHHHHHHHHcC
Confidence            99999999999999999999999998874

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.84  E-value=3.1e-20  Score=143.98  Aligned_cols=101  Identities=26%  Similarity=0.448  Sum_probs=93.1

Q ss_pred             CcEEcCh-hhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           57 DVVSLNG-KNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        57 ~~~~l~~-~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      .+..++. ++|+..+.  ++++++|.|||+||++|+.+.|.++++++.+  ++.++.||++++++++++|+|.++||+++
T Consensus        14 ~v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~   91 (117)
T 2xc2_A           14 ELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVDKLEETARKYNISAMPTFIA   91 (117)
T ss_dssp             EEEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETTTSHHHHHHTTCCSSSEEEE
T ss_pred             eeEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECCccHHHHHHcCCCccceEEE
Confidence            3778887 89998886  7899999999999999999999999999988  79999999999999999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +++|+.+.++.| .+.+.+.++|++.+
T Consensus        92 ~~~G~~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           92 IKNGEKVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             EETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             EeCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence            999999999999 68899999998753

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.84  E-value=2.6e-20  Score=143.55  Aligned_cols=100  Identities=23%  Similarity=0.401  Sum_probs=90.6

Q ss_pred             CcEEc-ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSL-NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      .+..+ +.++|+..+.++++++|+||++||++|+.+.|.++++++++++ +.|+.||++++++++++|+|.++||+++++
T Consensus        13 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~   91 (114)
T 2oe3_A           13 SITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPTFVLGK   91 (114)
T ss_dssp             GSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSEEEEEE
T ss_pred             heeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccEEEEEe
Confidence            33444 4567788888899999999999999999999999999999985 999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHh
Q 015368          136 AGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                      +|+.+.++.|.. .+.|.++|++
T Consensus        92 ~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           92 DGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             TTEEEEEEESSC-HHHHHHHHHT
T ss_pred             CCeEEEEEeCCC-HHHHHHHHHh
Confidence            999999999998 9999999875

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.84  E-value=1.2e-20  Score=150.21  Aligned_cols=105  Identities=14%  Similarity=0.197  Sum_probs=96.1

Q ss_pred             CCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC---------cccHhHHHHcCC
Q 015368           55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA---------YLEKDLAKEYNI  125 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~---------~~~~~~~~~~~i  125 (408)
                      ...+..++.++|+..+.+  +++|+|||+||++|+.+.|.++++++.++  +.|+.||+         +++++++++|+|
T Consensus        15 ~~~v~~l~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~v   90 (135)
T 3emx_A           15 DGRLIYITPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAGV   90 (135)
T ss_dssp             TTEEEECCHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHTC
T ss_pred             cCceeecCHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcCC
Confidence            356888999999998866  99999999999999999999999999986  99999999         889999999999


Q ss_pred             CcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCC
Q 015368          126 LAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       126 ~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                      .++||++++++|+.+.++.|..+.+.+.+++++.+.++
T Consensus        91 ~~~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~~~~~~  128 (135)
T 3emx_A           91 EGTPTLVFYKEGRIVDKLVGATPWSLKVEKAREIYGGE  128 (135)
T ss_dssp             CSSSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC---
T ss_pred             ceeCeEEEEcCCEEEEEEeCCCCHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999988654

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.84  E-value=1.2e-20  Score=148.35  Aligned_cols=96  Identities=17%  Similarity=0.222  Sum_probs=89.5

Q ss_pred             HHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEe--CcccHhHHHHcCCCcCcEEEEEe-CCeEeEEee
Q 015368           68 EFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD--AYLEKDLAKEYNILAYPTLYLFV-AGVRQFQFF  144 (408)
Q Consensus        68 ~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~--~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~  144 (408)
                      ....++++++|+||++||++|+.+.|.++++++.+++++.++.||  ++++.+++++|+|.++||+++++ +|+.+.++.
T Consensus        21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~~~~~  100 (126)
T 2l57_A           21 EEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKFYVHQ  100 (126)
T ss_dssp             TTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEEEEEE
T ss_pred             HHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEEEEec
Confidence            445678999999999999999999999999999997789999999  99999999999999999999999 999889999


Q ss_pred             CCCCHHHHHHHHHhHhCCC
Q 015368          145 GERTRDVISAWVREKMTLG  163 (408)
Q Consensus       145 g~~~~~~l~~~i~~~~~~~  163 (408)
                      |..+.+.|.++|++.+.+.
T Consensus       101 G~~~~~~l~~~l~~~~~~~  119 (126)
T 2l57_A          101 GLMRKNNIETILNSLGVKE  119 (126)
T ss_dssp             SCCCHHHHHHHHHHHCCCC
T ss_pred             CCCCHHHHHHHHHHHhccc
Confidence            9999999999999988654

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.84  E-value=4.2e-21  Score=150.03  Aligned_cols=105  Identities=21%  Similarity=0.402  Sum_probs=91.4

Q ss_pred             CCcEEcChhhHHHHH-cCCCcEEEEEecCCCh--------------hHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH
Q 015368           56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCY--------------WSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA  120 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~--------------~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~  120 (408)
                      +.+..+++++|+..+ .++++++|+|||+||+              +|+.+.|.++++++.+++++.++.||++++++++
T Consensus         3 ~~v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~   82 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA   82 (123)
T ss_dssp             CSCEECCSTTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTG
T ss_pred             CccEecChhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH
Confidence            467889999998554 7789999999999999              9999999999999999878999999999999999


Q ss_pred             HHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          121 KEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       121 ~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++|+|.++||+++|++|+.+.++.|..+.+++.+||++.+
T Consensus        83 ~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  122 (123)
T 1oaz_A           83 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  122 (123)
T ss_dssp             GGGTCCBSSEEEEEESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred             HHcCCCccCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            9999999999999999998999999999999999998765

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=151.33  Aligned_cols=133  Identities=27%  Similarity=0.422  Sum_probs=105.2

Q ss_pred             HHhcCCCCceEeeccccccccccCCccEEEE-EeeCC--CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhh
Q 015368          259 FVTHTKHPLVVTLTIHNAQFVFQDPRKQLWL-FAPAY--GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQ  335 (408)
Q Consensus       259 fi~~~~~p~v~~lt~~~~~~~~~~~~~~~i~-f~~~~--~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~  335 (408)
                      -+.+++.|+|.++|.+|+..++..+.+.+++ |....  +.+.+...++++|++++++   +.|+++|.....+ .+.++
T Consensus         7 ~~~~~~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgk---i~Fv~vd~~~~~~-~~~l~   82 (147)
T 3bj5_A            7 HMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFAFIDSDHTDN-QRILE   82 (147)
T ss_dssp             --------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTT---CEEEEECTTCGGG-HHHHH
T ss_pred             chhhccCCeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCc---eEEEEEecchHhH-HHHHH
Confidence            3567899999999999999999998877654 66433  2667899999999999999   9999999854443 35779


Q ss_pred             hccCCCCCCcEEEEEcc--CCccccCC-CCCChHHHHHHHHHHhcCcc--ccccccCchhhhcCc
Q 015368          336 EFGVSGNAPRVIAYSAR--DAKKYVLN-GELTLSSIKSFGEEFLEDKL--LNQSDQISETILKLP  395 (408)
Q Consensus       336 ~~~i~~~~~p~i~i~~~--~~~~y~~~-~~~~~~~i~~Fi~~~~~gk~--~~kse~iP~~~~~~~  395 (408)
                      .||++.+..|+++|.+.  ++++|.+. ++++.+.|.+|++++++|++  ++||||||++|+.++
T Consensus        83 ~fGl~~~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL~p~~KSEpiPe~wn~~p  147 (147)
T 3bj5_A           83 FFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQP  147 (147)
T ss_dssp             HTTCCGGGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCSCEEECCSCCCGGGC---
T ss_pred             HcCCCcccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCccccccCCCCCCCcCCCC
Confidence            99998777899999875  57889976 79999999999999999999  999999999987653

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.84  E-value=7.5e-20  Score=143.19  Aligned_cols=104  Identities=25%  Similarity=0.369  Sum_probs=94.2

Q ss_pred             CCCcEEc-ChhhHHHHHc----CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCc
Q 015368           55 AKDVVSL-NGKNFSEFMG----KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYP  129 (408)
Q Consensus        55 ~~~~~~l-~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~P  129 (408)
                      ...+..+ +.++|+..+.    ++++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++++++++|+|.++|
T Consensus        15 ~~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~v~~~P   93 (124)
T 1xfl_A           15 EGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAMP   93 (124)
T ss_dssp             CSCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSSS
T ss_pred             CCcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECccCHHHHHHcCCCccC
Confidence            3467777 7789987774    48999999999999999999999999999987 7999999999999999999999999


Q ss_pred             EEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          130 TLYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       130 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      |++++++|+.+.++.| .+.+.+.++|++.+
T Consensus        94 t~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  123 (124)
T 1xfl_A           94 TFMFLKEGKILDKVVG-AKKDELQSTIAKHL  123 (124)
T ss_dssp             EEEEEETTEEEEEEES-CCHHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEeC-CCHHHHHHHHHHhc
Confidence            9999999998899999 58999999998765

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.84  E-value=2e-20  Score=143.29  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=92.8

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG  137 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g  137 (408)
                      +..++.++| +.+.++++++|+||++||++|+.+.|.++++++.+. ++.++.||++++++++++|+|.++||+++|++|
T Consensus         5 ~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G   82 (110)
T 2l6c_A            5 RDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDSEARPELMKELGFERVPTLVFIRDG   82 (110)
T ss_dssp             SBCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEGGGCHHHHHHTTCCSSCEEEEEESS
T ss_pred             eecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcCcCCHHHHHHcCCcccCEEEEEECC
Confidence            345778889 677788999999999999999999999999999886 799999999999999999999999999999999


Q ss_pred             eEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          138 VRQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       138 ~~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      +.+.++.|..+.++|.+++.+..++
T Consensus        83 ~~v~~~~G~~~~~~l~~~~~~~~~~  107 (110)
T 2l6c_A           83 KVAKVFSGIMNPRELQALYASIHHH  107 (110)
T ss_dssp             SEEEEEESCCCHHHHHHHHHTC---
T ss_pred             EEEEEEcCCCCHHHHHHHHHHHhhh
Confidence            9999999999999999999877643

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.83  E-value=8.5e-20  Score=138.23  Aligned_cols=100  Identities=24%  Similarity=0.437  Sum_probs=91.2

Q ss_pred             EEcCh-hhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           59 VSLNG-KNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        59 ~~l~~-~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      ..++. ++|++.+.  ++++++|.||++||++|+.+.|.+.++++.++ ++.++.||++++++++++|+|.++||+++++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~   80 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVDQNEEAAAKYSVTAMPTFVFIK   80 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEeccCCHHHHHHcCCccccEEEEEe
Confidence            34555 88988886  78999999999999999999999999999987 7999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|+.+.++.| .+.+.+.+++++.+
T Consensus        81 ~g~~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           81 DGKEVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             TTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             CCcEEEEEeC-CCHHHHHHHHHhhC
Confidence            9998899999 68999999998753

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.83  E-value=1.3e-20  Score=146.41  Aligned_cols=102  Identities=13%  Similarity=0.149  Sum_probs=88.9

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC----cccHhHHHHcCCCcCcEE
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA----YLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~----~~~~~~~~~~~i~~~Pt~  131 (408)
                      ..+..++.++++..+.++++++|+|||+||++|+.+.|.++++++.++..+.++.++.    ++.++++++|+|.++||+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~   91 (118)
T 1zma_A           12 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGF   91 (118)
T ss_dssp             TTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEE
T ss_pred             hhhhcCCHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeE
Confidence            4677889999999998899999999999999999999999999998875666553332    334678999999999999


Q ss_pred             EEEeCCeEeEEeeCCCCHHHHHHHHH
Q 015368          132 YLFVAGVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       132 ~~~~~g~~~~~~~g~~~~~~l~~~i~  157 (408)
                      +++++|+.+.++.|..+.+.|.+||+
T Consensus        92 ~~~~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           92 VHITDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             EEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEECCEEEEEecCCCCHHHHHHHhh
Confidence            99999999999999999999999985

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.83  E-value=8.6e-20  Score=148.51  Aligned_cols=105  Identities=19%  Similarity=0.303  Sum_probs=95.8

Q ss_pred             CCcEEcC-hhhHHHHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSLN-GKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l~-~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      ..+..++ .++|+..+.+  +++++|+||++||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|.++||++
T Consensus        12 ~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~   90 (153)
T 2wz9_A           12 AAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAEGVPEVSEKYEISSVPTFL   90 (153)
T ss_dssp             CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEEE
T ss_pred             CCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECCCCHHHHHHcCCCCCCEEE
Confidence            4677776 6899988866  8999999999999999999999999999985 7999999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      +|++|+.+.++.|. +.++|.++|.+.+..
T Consensus        91 ~~~~G~~~~~~~G~-~~~~l~~~i~~~l~~  119 (153)
T 2wz9_A           91 FFKNSQKIDRLDGA-HAPELTKKVQRHASS  119 (153)
T ss_dssp             EEETTEEEEEEESS-CHHHHHHHHHHHSCT
T ss_pred             EEECCEEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            99999888899995 788899999999854

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.83  E-value=9.5e-20  Score=142.78  Aligned_cols=103  Identities=20%  Similarity=0.327  Sum_probs=94.4

Q ss_pred             CCcEEcChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-ccHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSLNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-~~~~~~~~~~i~~~Pt~~  132 (408)
                      ..+..++.++|+..+.  ++++++|.||++||++|+.+.|.+++++++++ ++.++.||++ ++++++++|+|.++||++
T Consensus        18 ~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~v~~~Pt~~   96 (124)
T 1faa_A           18 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFK   96 (124)
T ss_dssp             TSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSSSSEEE
T ss_pred             CceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-CCEEEEEecCcchHHHHHHcCCCeeeEEE
Confidence            5788999999998775  68999999999999999999999999999987 6999999998 689999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++++|+.+.++.|.. .+++.+++++..
T Consensus        97 ~~~~G~~~~~~~G~~-~~~l~~~i~~~~  123 (124)
T 1faa_A           97 ILKENSVVGEVTGAK-YDKLLEAIQAAR  123 (124)
T ss_dssp             EEETTEEEEEEESSC-HHHHHHHHHHHT
T ss_pred             EEeCCcEEEEEcCCC-HHHHHHHHHHhh
Confidence            999999889999986 899999998754

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.83  E-value=7e-21  Score=148.59  Aligned_cols=107  Identities=25%  Similarity=0.505  Sum_probs=95.0

Q ss_pred             cCCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-----CcEEEEEeCcccHhHHHHcCCCc
Q 015368           54 YAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-----EADLVMVDAYLEKDLAKEYNILA  127 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-----~v~~~~v~~~~~~~~~~~~~i~~  127 (408)
                      ....+..+++++|+..+ .++++++|+|||+||++|+.+.|.|+++++.+++     ++.++.||+++++ +++  +|.+
T Consensus         5 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~   81 (121)
T 2djj_A            5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQG   81 (121)
T ss_dssp             CSCSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSS
T ss_pred             CCCCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCc
Confidence            45678999999999875 6789999999999999999999999999999986     7999999999876 665  9999


Q ss_pred             CcEEEEEeCCeE--eEEeeCCCCHHHHHHHHHhHhCCC
Q 015368          128 YPTLYLFVAGVR--QFQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       128 ~Pt~~~~~~g~~--~~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                      +||+++|++|..  +.++.|..+.+.|.+||.+.+...
T Consensus        82 ~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~  119 (121)
T 2djj_A           82 FPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYK  119 (121)
T ss_dssp             SSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSSC
T ss_pred             CCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCcC
Confidence            999999996644  788999999999999999887543

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.83  E-value=9.8e-21  Score=151.08  Aligned_cols=111  Identities=9%  Similarity=0.131  Sum_probs=83.2

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCC--ChhHHhhhHHHHHHHHHhcCCcE--EEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANW--CYWSKKLAPEFAAAAKMLKGEAD--LVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~w--C~~C~~~~p~~~~~~~~~~~~v~--~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      .+..++.++|++.+.+++.++|.||++|  |++|+.+.|.++++++++ +++.  |+.||++++++++++|+|+++||++
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~   96 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADLEQSEAIGDRFNVRRFPATL   96 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECHHHHHHHHHTTTCCSSSEEE
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEECCCCHHHHHhcCCCcCCeEE
Confidence            5678899999999887788999999988  999999999999999999 7788  9999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCccccc
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKMTLGTYSIT  168 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~  168 (408)
                      +|++|+.+.++.|..+.++|.++|++.+..+...+.
T Consensus        97 ~fk~G~~v~~~~G~~~~~~l~~~i~~~l~~~~~~~~  132 (142)
T 2es7_A           97 VFTDGKLRGALSGIHPWAELLTLMRSIVDTPAAQET  132 (142)
T ss_dssp             EESCC----CEESCCCHHHHHHHHHHHHC-------
T ss_pred             EEeCCEEEEEEeCCCCHHHHHHHHHHHhcccccCCC
Confidence            999999999999999999999999999977766554

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=4.6e-21  Score=153.07  Aligned_cols=104  Identities=21%  Similarity=0.322  Sum_probs=94.3

Q ss_pred             CCcEEcChhhHHHHHcCC--CcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCC------
Q 015368           56 KDVVSLNGKNFSEFMGKN--RNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL------  126 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~--~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~------  126 (408)
                      ..+..++.++|+..+.++  ++++|+|||+||++|+.+.|.|+++++++++ ++.|+.||++++++++++|+|.      
T Consensus         7 ~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~   86 (137)
T 2dj0_A            7 GYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTK   86 (137)
T ss_dssp             SCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSS
T ss_pred             ceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcC
Confidence            468899999999888544  4999999999999999999999999999986 8999999999999999999999      


Q ss_pred             cCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          127 AYPTLYLFVAGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       127 ~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                      ++||+++|++|+.+.++.|..+.+.+.+|+.+.
T Consensus        87 ~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  119 (137)
T 2dj0_A           87 QLPTLILFQGGKEAMRRPQIDKKGRAVSWTFSE  119 (137)
T ss_dssp             CSSEEEEESSSSEEEEESCBCSSSCBCCCCCCH
T ss_pred             CCCEEEEEECCEEEEEecCcCchHHHHHHHhcc
Confidence            999999999999999999999888877776544

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.82  E-value=1e-19  Score=141.92  Aligned_cols=104  Identities=23%  Similarity=0.419  Sum_probs=94.9

Q ss_pred             CCcEEcCh-hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCC-cEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           56 KDVVSLNG-KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE-ADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        56 ~~~~~l~~-~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      ..+..++. ++|++.+.++++++|.||++||++|+.+.|.++++++.+++. +.++.||++++++++++|+|.++||+++
T Consensus        15 ~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~   94 (121)
T 2j23_A           15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVF   94 (121)
T ss_dssp             CCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEE
T ss_pred             cceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEE
Confidence            45556654 899999988999999999999999999999999999988764 9999999999999999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +++|+.+.++.|. +.+.|.++|++.+
T Consensus        95 ~~~G~~~~~~~G~-~~~~l~~~l~~~l  120 (121)
T 2j23_A           95 FKNGQKIDTVVGA-DPSKLQAAITQHS  120 (121)
T ss_dssp             EETTEEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EECCeEEeeEcCC-CHHHHHHHHHHhh
Confidence            9999989999999 9999999998765

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.82  E-value=7.4e-20  Score=146.57  Aligned_cols=99  Identities=17%  Similarity=0.194  Sum_probs=86.3

Q ss_pred             ChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368           62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        62 ~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      +.++|+..+.  ++++++|+|||+||++|+.+.|.++++++++++++.|+.||++++++++++|+|.++||+++|++|+.
T Consensus        10 ~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~~   89 (142)
T 1qgv_A           10 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKH   89 (142)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEECCcE
Confidence            5788886663  58999999999999999999999999999998789999999999999999999999999999999977


Q ss_pred             eE---------EeeCCCC-HHHHHHHHHhHh
Q 015368          140 QF---------QFFGERT-RDVISAWVREKM  160 (408)
Q Consensus       140 ~~---------~~~g~~~-~~~l~~~i~~~~  160 (408)
                      +.         +..|..+ .+++.++|++.+
T Consensus        90 v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~  120 (142)
T 1qgv_A           90 IMIDLGTGNNNKINWAMEDKQEMVDIIETVY  120 (142)
T ss_dssp             EEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred             EEEecCCCCcceeeeecCcHHHHHHHHHHHH
Confidence            65         3455554 788888887665

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.82  E-value=1.5e-19  Score=138.95  Aligned_cols=100  Identities=13%  Similarity=0.205  Sum_probs=87.2

Q ss_pred             CCcEEcChhhHHHHHc-CCC--cEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSLNGKNFSEFMG-KNR--NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~-~~~--~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      ..+.+++.++|.+.+. .++  +++|+|||+||++|+.+.|.++++++++. ++.|++||+++.   +++|+|+++||++
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~d~~---~~~~~v~~~PT~~   78 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIVNSC---IQHYHDNCLPTIF   78 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEGGGT---STTCCGGGCSEEE
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEhHHh---HHHCCCCCCCEEE
Confidence            3577889999998774 333  89999999999999999999999999987 699999999986   5899999999999


Q ss_pred             EEeCCeEeEEeeCCC-------CHHHHHHHHHhH
Q 015368          133 LFVAGVRQFQFFGER-------TRDVISAWVREK  159 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~-------~~~~l~~~i~~~  159 (408)
                      +|++|+.+.++.|..       +.+++..+|.+.
T Consensus        79 ~fk~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           79 VYKNGQIEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             EEETTEEEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             EEECCEEEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            999999999999864       678888887654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.82  E-value=2.4e-19  Score=139.07  Aligned_cols=105  Identities=19%  Similarity=0.278  Sum_probs=91.3

Q ss_pred             CcEEc--ChhhHHH-HHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           57 DVVSL--NGKNFSE-FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        57 ~~~~l--~~~~~~~-~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      .+..+  +..+|++ +..++++++|+||++||++|+.+.|.++++++.+ +++.|+.||++++++++++|+|.++||+++
T Consensus         4 ~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~   82 (118)
T 2f51_A            4 PIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIPALFF   82 (118)
T ss_dssp             CSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEEE
T ss_pred             cceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCCEEEE
Confidence            46666  5788884 4467899999999999999999999999999999 689999999999999999999999999999


Q ss_pred             EeC----CeEeEEeeCCCCHHHHHHHHHhHhCCC
Q 015368          134 FVA----GVRQFQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       134 ~~~----g~~~~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                      |++    |+.+.++.|..+. +|.+.+.++..++
T Consensus        83 ~~~~~~~G~~~~~~~G~~~~-~l~~~~~~~~~~~  115 (118)
T 2f51_A           83 VKKEGNEIKTLDQFVGADVS-RIKADIEKFKHHH  115 (118)
T ss_dssp             EEEETTEEEEEEEEESCCHH-HHHHHHHHHC---
T ss_pred             EeCCCCcceEEEeecCCCHH-HHHHHHHHhhhcc
Confidence            998    9888999998654 5999998887543

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.81  E-value=4.3e-19  Score=137.68  Aligned_cols=105  Identities=29%  Similarity=0.409  Sum_probs=94.4

Q ss_pred             CCcEEc-ChhhHHHHHcC----CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           56 KDVVSL-NGKNFSEFMGK----NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        56 ~~~~~l-~~~~~~~~~~~----~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      ..+..+ +.++|+..+..    +++++|.||++||++|+.+.|.++++++.++ ++.++.||++++++++++|++.++||
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~~Pt   84 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVDELKDVAEAYNVEAMPT   84 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSBSE
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcccCHHHHHHcCCCcCcE
Confidence            356677 57889887744    8999999999999999999999999999987 79999999999999999999999999


Q ss_pred             EEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          131 LYLFVAGVRQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      ++++++|+.+.++.| .+.+.+.++|.+.+..
T Consensus        85 ~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           85 FLFIKDGEKVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             EEEEETTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             EEEEeCCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence            999999998889999 5899999999988754

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.81  E-value=4.2e-19  Score=142.02  Aligned_cols=106  Identities=16%  Similarity=0.328  Sum_probs=95.2

Q ss_pred             CCCcEEc-ChhhHHHHH----cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCc
Q 015368           55 AKDVVSL-NGKNFSEFM----GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYP  129 (408)
Q Consensus        55 ~~~~~~l-~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~P  129 (408)
                      ...+..+ +.++|++.+    .++++++|+||++||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|.++|
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~P  101 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-SLMFLVIDVDELSDFSASWEIKATP  101 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCEES
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CCEEEEEeCcccHHHHHHcCCCccc
Confidence            3456666 478998776    358999999999999999999999999999985 7999999999999999999999999


Q ss_pred             EEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          130 TLYLFVAGVRQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       130 t~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      |++++++|+.+.++.|. +.+++.++|.+.+..
T Consensus       102 t~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~~  133 (139)
T 3d22_A          102 TFFFLRDGQQVDKLVGA-NKPELHKKITAILDS  133 (139)
T ss_dssp             EEEEEETTEEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCeEEEEEeCC-CHHHHHHHHHHHhcc
Confidence            99999999999999998 899999999988754

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.81  E-value=1.3e-20  Score=149.66  Aligned_cols=110  Identities=25%  Similarity=0.508  Sum_probs=96.9

Q ss_pred             CCCcEEcChhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           55 AKDVVSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      ...+..+++++|+..+. ++++++|+|||+||++|+.+.|.|+++++.++  +++.++.||++++..++++|+|.++||+
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~   85 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTI   85 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEE
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEE
Confidence            45789999999997774 58999999999999999999999999999997  4799999999999999999999999999


Q ss_pred             EEEeCCeEe--EEee-CCCCHHHHHHHHHhHhCCCc
Q 015368          132 YLFVAGVRQ--FQFF-GERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       132 ~~~~~g~~~--~~~~-g~~~~~~l~~~i~~~~~~~~  164 (408)
                      ++|++|..+  .+|. |..+.+.|.+||.+.+....
T Consensus        86 ~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~~  121 (133)
T 2dj3_A           86 YFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRS  121 (133)
T ss_dssp             EEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSCS
T ss_pred             EEEeCCCcccceEecCCCcCHHHHHHHHHHhccccc
Confidence            999976433  3677 56899999999999986553

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.81  E-value=2.7e-19  Score=137.70  Aligned_cols=103  Identities=26%  Similarity=0.395  Sum_probs=93.2

Q ss_pred             CCcEEc-ChhhHHHHHc----CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           56 KDVVSL-NGKNFSEFMG----KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        56 ~~~~~l-~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      ..+..+ +.++|++.+.    ++++++|.||++||++|+.+.|.++++++.++ ++.++.||++++++++++|++.++||
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt   82 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMPT   82 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTTE
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEccccHHHHHhCCCCcccE
Confidence            356667 6789988774    48999999999999999999999999999987 79999999999999999999999999


Q ss_pred             EEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          131 LYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++++++|+.+.++.| .+.+.+.++|++.+
T Consensus        83 ~~~~~~G~~~~~~~g-~~~~~l~~~l~~~~  111 (113)
T 1ti3_A           83 FIFLKDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             EEEEeCCEEEEEEec-CCHHHHHHHHHHhh
Confidence            999999998889999 68899999998765

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.81  E-value=1.4e-18  Score=152.23  Aligned_cols=189  Identities=12%  Similarity=0.100  Sum_probs=144.8

Q ss_pred             hhHHHHHc-CCCcEEEEEecCC--ChhHHhhhHHHHHHHHHh---cCC--cEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           64 KNFSEFMG-KNRNVMVMFYANW--CYWSKKLAPEFAAAAKML---KGE--ADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        64 ~~~~~~~~-~~~~~~v~f~a~w--C~~C~~~~p~~~~~~~~~---~~~--v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      ++++..+. -.++++|.||++|  |++|+.+.|.++++++.+   +++  +.|+.+|+++++++|++|||+++||+.++ 
T Consensus        15 ~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~-   93 (243)
T 2hls_A           15 RELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL-   93 (243)
T ss_dssp             HHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET-
T ss_pred             HHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE-
Confidence            45556663 3479999999999  999999999999999985   333  99999999999999999999999999999 


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHhC--CCcccccChhHHHHHhcc-CCeEEEEEecCCCCcCHHH---HHHHh-ccC--
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKMT--LGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEE---LAAAS-KLH--  206 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~~--~~~~~i~~~~~~~~~~~~-~~~~vi~f~~~~~~~~~~~---~~~~a-~~~--  206 (408)
                      +|  ..+|.|..+.+.+..|+...+.  .....+ +.+..+.+.+. .+..++.|+++||.++...   +..++ .+.  
T Consensus        94 ~g--~~~~~G~~~~~~l~~fv~~~l~~~~~~~~l-~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~  170 (243)
T 2hls_A           94 GG--EVRWTGIPAGEEIRALVEVIMRLSEDESGL-EDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQ  170 (243)
T ss_dssp             TT--TEEEESCCCTTHHHHHHHHHHHHHTTCCCC-CHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHT
T ss_pred             CC--ceeEcCCCcHHHHHHHHHHHHhccCCCCCC-CHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccc
Confidence            67  7889999888889999887652  222223 44555554433 4566778999999986544   44455 331  


Q ss_pred             --CceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCC
Q 015368          207 --SDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       207 --~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                        .++.+..+   .+.+++++|++.   ++|++++  + + . ..|.|..+.++|.+||....
T Consensus       171 ~~~~v~~~~vd~~~~~~~~~~~~V~---~vPt~~i--~-G-~-~~~~G~~~~~~l~~~l~~~~  225 (243)
T 2hls_A          171 GNPVILSEAVEAYENPDIADKYGVM---SVPSIAI--N-G-Y-LVFVGVPYEEDFLDYVKSAA  225 (243)
T ss_dssp             TCCCEEEEEEETTTCHHHHHHTTCC---SSSEEEE--T-T-E-EEEESCCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEEEECccCHHHHHHcCCe---eeCeEEE--C-C-E-EEEeCCCCHHHHHHHHHHHh
Confidence              56777665   567889999998   6999987  2 2 3 35999999999999998654

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.80  E-value=2.6e-19  Score=141.94  Aligned_cols=104  Identities=18%  Similarity=0.281  Sum_probs=92.4

Q ss_pred             CCCcEEcCh-hhHHHHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           55 AKDVVSLNG-KNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        55 ~~~~~~l~~-~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      ...+..++. ++|+..+..  +++++|+|||+||++|+.+.|.++++++.+  ++.++.||++++++++++|+|.++||+
T Consensus        19 ~~~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~   96 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY--YVTLVDIDVDIHPKLNDQHNIKALPTF   96 (133)
T ss_dssp             TEEEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE--ECEEEEEETTTCHHHHHHTTCCSSSEE
T ss_pred             CccEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc--CEEEEEEeccchHHHHHhcCCCCCCEE
Confidence            456778875 888888854  579999999999999999999999998887  599999999999999999999999999


Q ss_pred             EEEe--CCe--EeEEeeCCCCHHHHHHHHHhHhC
Q 015368          132 YLFV--AGV--RQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       132 ~~~~--~g~--~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ++|+  +|+  .+.++.|. +.++|.++|.+.+.
T Consensus        97 ~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~  129 (133)
T 3cxg_A           97 EFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCL  129 (133)
T ss_dssp             EEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSE
T ss_pred             EEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHH
Confidence            9996  887  78889998 89999999998764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.80  E-value=6.6e-19  Score=154.72  Aligned_cols=108  Identities=36%  Similarity=0.550  Sum_probs=100.0

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      ..+..++.++|+..+.++++++|+|||+||++|+.+.|.+.++++.+++   ++.++.||++++++++++|+|.++||++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  209 (241)
T 3idv_A          130 EVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLK  209 (241)
T ss_dssp             CSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             ccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEE
Confidence            4678899999999998889999999999999999999999999999976   4999999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHhCCCc
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~  164 (408)
                      +|++|+.+. |.|.++.++|.+||.+.+++.+
T Consensus       210 ~~~~g~~~~-~~g~~~~~~l~~~l~~~~~~~~  240 (241)
T 3idv_A          210 IFRKGRPYD-YNGPREKYGIVDYMIEQSGAAA  240 (241)
T ss_dssp             EEETTEEEE-CCSCCSHHHHHHHHHHHTTCTT
T ss_pred             EEECCeEEE-ecCCCCHHHHHHHHHhhhCCCC
Confidence            999996654 9999999999999999987654

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.80  E-value=9.2e-17  Score=155.63  Aligned_cols=307  Identities=16%  Similarity=0.234  Sum_probs=226.7

Q ss_pred             CCcEEc-ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSL-NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      ..+..+ +.++++..+..++.++|.|+.++|..|   .+.|.++++.+++++.|+.++   +.+++++|++...| +++|
T Consensus       110 ~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~~---~~~f~~~a~~~~~~~~F~~~~---~~~~~~~~~v~~~~-i~~~  182 (481)
T 3f8u_A          110 PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEA---HSEFLKAASNLRDNYRFAHTN---VESLVNEYDDNGEG-IILF  182 (481)
T ss_dssp             CSEEEECSHHHHHHHTTSSSCEEEEEESCTTCHH---HHHHHHHHHHHTTTSCEEEEC---CHHHHHHHCSSSEE-EEEE
T ss_pred             cCceecCCHHHHHHHHhcCCcEEEEEECCCccch---HHHHHHHHHHhccCceEEEEC---CHHHHHHhCCCCCc-EEEE
Confidence            345566 667888888888999999999987765   568999999998899999775   67899999999866 7777


Q ss_pred             e------C-CeEeEEee-CCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCcC-------HHHH
Q 015368          135 V------A-GVRQFQFF-GERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGME-------SEEL  199 (408)
Q Consensus       135 ~------~-g~~~~~~~-g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~-------~~~~  199 (408)
                      +      + +.....|. |..+.+.|.+||..+..+.+.+++. +.+..+..  ...+++|+.......       ...+
T Consensus       183 ~p~~~~~~~~~~~~~y~~~~~~~~~l~~fi~~~~~p~v~e~t~-~n~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~  259 (481)
T 3f8u_A          183 RPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTE-DNKDLIQG--KDLLIAYYDVDYEKNAKGSNYWRNRV  259 (481)
T ss_dssp             CCGGGCBTTBCSEEECCCSSCCHHHHHHHHHHHTTTTSCEECT-TTHHHHTT--SSEEEEEECCCTTTCHHHHHHHHHHH
T ss_pred             ecccccCccCCcccccCCCCCCHHHHHHHHHHhCCCCccccCh-hHHHHhcC--CCceEEEEecccccchhhHHHHHHHH
Confidence            6      1 22456788 8899999999999999999988854 55555543  334455554322221       2335


Q ss_pred             HHHh-ccCCc---eeEEEecC---HhHHhhcCCCCC-CCCCeEEEeecCCCcccccCCcCCHH--HHHHHHhcCC-----
Q 015368          200 AAAS-KLHSD---VNFYQTTS---ADVAEFFHIHPK-SKRPALIFLHLEAGKATPFRHQFTRL--AIANFVTHTK-----  264 (408)
Q Consensus       200 ~~~a-~~~~~---~~f~~~~~---~~l~~~~~i~~~-~~~p~l~~~~~~~~~~~~y~g~~~~~--~i~~fi~~~~-----  264 (408)
                      ..+| ++.++   +.|+.+..   ....+.||++.. ...|.++++.. ++..+.+++.++.+  .|.+|+....     
T Consensus       260 ~~vA~~~~~k~~~i~F~~~D~~~~~~~l~~~gl~~~~~~~P~~~i~~~-~~~ky~~~~~~t~e~~~l~~f~~~~~~g~~~  338 (481)
T 3f8u_A          260 MMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTA-KGEKFVMQEEFSRDGKALERFLQDYFDGNLK  338 (481)
T ss_dssp             HHHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCTTCSCEEEEECS-SSCEEECCSCCCTTSHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHhcCCCceEEEEEEcHHHHHHHHHHcCCCcccCCCcEEEEEcC-CCcccCCCcccCccHHHHHHHHHHHhcCCcc
Confidence            5666 55555   88887643   346678898731 24799998873 34566777888888  9999987411     


Q ss_pred             ------------CCceEeeccccccccccC-CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCccc
Q 015368          265 ------------HPLVVTLTIHNAQFVFQD-PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGV  329 (408)
Q Consensus       265 ------------~p~v~~lt~~~~~~~~~~-~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~  329 (408)
                                  ...+..++..++..+... +.++++ ++.+||. |+...+.+.++++++.++ +++.|+.+|++..  
T Consensus       339 ~~~~s~~~p~~~~~~v~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~~v~~~~id~~~~--  415 (481)
T 3f8u_A          339 RYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKD-PNIVIAKMDATAN--  415 (481)
T ss_dssp             CCCCCCCCCSCCCSSSEEECTTTHHHHHTCTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTC-SSEEEEEEETTSS--
T ss_pred             cccccCCCCCCCCCCeEEecccCHHHHhhcCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccC-CCEEEEEEECCch--
Confidence                        124677888888876655 445444 5667887 999999999999999873 2399999998763  


Q ss_pred             ccchhhhccCCCCCCcEEEEEccCCc--cccCCCCCChHHHHHHHHHHhcCcc
Q 015368          330 GRRVSQEFGVSGNAPRVIAYSARDAK--KYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       330 ~~~l~~~~~i~~~~~p~i~i~~~~~~--~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                        .+.+.|++.  ..|.+++++.+++  ...+.|..+.+.+.+||++......
T Consensus       416 --~~~~~~~v~--~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~~~~  464 (481)
T 3f8u_A          416 --DVPSPYEVR--GFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATNPP  464 (481)
T ss_dssp             --CCCTTCCCC--SSSEEEEECTTCTTSCEECCSCCSHHHHHHHHHHHCSSCC
T ss_pred             --hhHhhCCCc--ccCEEEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhcCCcc
Confidence              566788885  3689888887554  5678999999999999999887766

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.79  E-value=7.7e-19  Score=139.51  Aligned_cols=102  Identities=13%  Similarity=0.175  Sum_probs=90.8

Q ss_pred             CCCcEEcChhhHHHHHcC---CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           55 AKDVVSLNGKNFSEFMGK---NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~~---~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      ...+..++.++|...+.+   +++++|+|||+||++|+.+.|.|+++++++. ++.|+.||+++..   ++|+|.++||+
T Consensus         9 ~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~~~~---~~~~i~~~Pt~   84 (135)
T 2dbc_A            9 FGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVNSCI---EHYHDNCLPTI   84 (135)
T ss_dssp             CCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCSSSC---SSCCSSCCSEE
T ss_pred             CCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhhcCc---ccCCCCCCCEE
Confidence            357888999999987743   3699999999999999999999999999986 6999999999875   78999999999


Q ss_pred             EEEeCCeEeEEeeCCC-------CHHHHHHHHHhHh
Q 015368          132 YLFVAGVRQFQFFGER-------TRDVISAWVREKM  160 (408)
Q Consensus       132 ~~~~~g~~~~~~~g~~-------~~~~l~~~i~~~~  160 (408)
                      ++|++|+.+.++.|..       +.++|.++|.+..
T Consensus        85 ~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           85 FVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             EEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             EEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            9999999899999975       7899999998774

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=9.1e-19  Score=138.36  Aligned_cols=105  Identities=19%  Similarity=0.327  Sum_probs=91.5

Q ss_pred             EEcChhhHHHHH----cCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCc--ccHhHHHHcCCCcCc
Q 015368           59 VSLNGKNFSEFM----GKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYP  129 (408)
Q Consensus        59 ~~l~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~P  129 (408)
                      ..++..+|++.+    .++++++|+||++||++|+.+.|.+   +.+.+.++.++.++.||++  .+..++++|+|.++|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~P   88 (130)
T 2kuc_A            9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYP   88 (130)
T ss_dssp             CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSC
T ss_pred             CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCC
Confidence            345666777655    4689999999999999999999999   7777777668999999998  578999999999999


Q ss_pred             EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhCCC
Q 015368          130 TLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       130 t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                      ++++++ +|+++.++.|..+.+.|.++|++.+.+.
T Consensus        89 t~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  123 (130)
T 2kuc_A           89 TLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESE  123 (130)
T ss_dssp             EEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCC
T ss_pred             EEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            999995 9988899999999999999999988654

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.77  E-value=3e-18  Score=148.96  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=93.9

Q ss_pred             cEEcChhhHHHHHcCCCcE-EEEEecCCChhHHhhhHHHHHHHHHhc----CCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           58 VVSLNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLK----GEADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~-~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      ...+++++++.+...++++ +|+|||+||++|+++.|.++++++.++    +++.++.||++++++++++|+|.++||++
T Consensus       118 ~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~  197 (226)
T 1a8l_A          118 ETNLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIV  197 (226)
T ss_dssp             CCCCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEE
T ss_pred             CCCCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEE
Confidence            4467788888776666677 999999999999999999999999997    58999999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++++|+...++.|..+.+.|.+||.+.+
T Consensus       198 ~~~~G~~~~~~~G~~~~~~l~~~l~~~l  225 (226)
T 1a8l_A          198 IQVNGEDRVEFEGAYPEKMFLEKLLSAL  225 (226)
T ss_dssp             EEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             EEeCCceeEEEcCCCCHHHHHHHHHHhh
Confidence            9999988899999999999999998765

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.77  E-value=1.9e-18  Score=137.06  Aligned_cols=93  Identities=15%  Similarity=0.276  Sum_probs=84.8

Q ss_pred             HHHcCCCcEEEEEecCCChhHHhhhHHHH--HHHHHhcCCcEEEEEeC---cccHhHHHHcCC---CcCcEEEEEe-CCe
Q 015368           68 EFMGKNRNVMVMFYANWCYWSKKLAPEFA--AAAKMLKGEADLVMVDA---YLEKDLAKEYNI---LAYPTLYLFV-AGV  138 (408)
Q Consensus        68 ~~~~~~~~~~v~f~a~wC~~C~~~~p~~~--~~~~~~~~~v~~~~v~~---~~~~~~~~~~~i---~~~Pt~~~~~-~g~  138 (408)
                      ....++++++|+|||+||++|+.+.|.+.  ++++.+++++.++.||+   +++++++++|+|   .++||+++++ +|+
T Consensus        24 ~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~  103 (133)
T 3fk8_A           24 AGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGK  103 (133)
T ss_dssp             HHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSC
T ss_pred             HHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCC
Confidence            34467899999999999999999999999  99999877899999999   999999999999   9999999995 999


Q ss_pred             EeEEeeC-------CCCHHHHHHHHHhHh
Q 015368          139 RQFQFFG-------ERTRDVISAWVREKM  160 (408)
Q Consensus       139 ~~~~~~g-------~~~~~~l~~~i~~~~  160 (408)
                      .+.++.|       ..+.+++.+|+++..
T Consensus       104 ~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A          104 VRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             EEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             EEEEecCCcccccccCCHHHHHHHHHHhc
Confidence            9999999       789999999998653

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.63  E-value=3e-20  Score=141.20  Aligned_cols=102  Identities=25%  Similarity=0.480  Sum_probs=93.4

Q ss_pred             cEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368           58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        58 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~  136 (408)
                      +..++.++|...+ .++++++|.||++||++|+.+.|.++++++.+++++.++.||++++++++++|++.++|+++++++
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~   82 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLFKN   82 (106)
Confidence            5578888888544 678999999999999999999999999999998789999999999999999999999999999999


Q ss_pred             CeEeEEeeCCCCHHHHHHHHHhH
Q 015368          137 GVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       137 g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                      |+.+.++.|..+.+.+.+++++.
T Consensus        83 g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           83 GQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            98888999999999999998764

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.76  E-value=9.8e-18  Score=145.47  Aligned_cols=119  Identities=20%  Similarity=0.252  Sum_probs=102.0

Q ss_pred             CCCcEEcChhhHHHHHcCCCcEEEEEe--cCCChhHHhhhHHHHHHHHHhc---CCcEEEEEeCcc-----cHhHHHHcC
Q 015368           55 AKDVVSLNGKNFSEFMGKNRNVMVMFY--ANWCYWSKKLAPEFAAAAKMLK---GEADLVMVDAYL-----EKDLAKEYN  124 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~~~~~~~v~f~--a~wC~~C~~~~p~~~~~~~~~~---~~v~~~~v~~~~-----~~~~~~~~~  124 (408)
                      ...+..|++.+|+..+.++++++|.||  ||||+    +.|.|+++++.+.   +++.|+.|||++     ++++|++|+
T Consensus        15 ~~~v~~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~   90 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK   90 (248)
T ss_dssp             CTTCEECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence            457889999999998888899999999  99998    9999999999984   389999999999     899999999


Q ss_pred             CC--cCcEEEEEeCCeE--eEEe--eCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhc
Q 015368          125 IL--AYPTLYLFVAGVR--QFQF--FGERTRDVISAWVREKMTLGTYSITTTDEAERILT  178 (408)
Q Consensus       125 i~--~~Pt~~~~~~g~~--~~~~--~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~  178 (408)
                      |+  ++||+++|. |+.  +.+|  .|.++.+.|.+||.+.++.....-...++++.++.
T Consensus        91 V~~~~~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~~~~~g~i~~~d~l~~  149 (248)
T 2c0g_A           91 VDDKNFPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTPLYIGRDGCIKEFNEVLK  149 (248)
T ss_dssp             CCTTSCCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSSCCCCCTTCCHHHHHHHT
T ss_pred             CCcCCCCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhccccCCCCchHHHHHHHH
Confidence            99  999999999 962  6788  89999999999999998644333334455665554

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.75  E-value=2.8e-18  Score=136.23  Aligned_cols=100  Identities=23%  Similarity=0.390  Sum_probs=86.6

Q ss_pred             cChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeC----cccHhHHHHcCCCcCcEE
Q 015368           61 LNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDA----YLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        61 l~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~----~~~~~~~~~~~i~~~Pt~  131 (408)
                      .+.++++..+.  ++++++|+|||+||++|+.+.|.+   .++++.++ ++.++.||+    +.+.+++++|+|.++||+
T Consensus        17 ~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~   95 (134)
T 2fwh_A           17 KTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTI   95 (134)
T ss_dssp             CSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred             cCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHHcCCCCCCEE
Confidence            35567776663  489999999999999999999999   99999987 599999999    667899999999999999


Q ss_pred             EEEe-CCeEe--EEeeCCCCHHHHHHHHHhHhC
Q 015368          132 YLFV-AGVRQ--FQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       132 ~~~~-~g~~~--~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ++++ +|+++  .++.|..+.++|.+++++..+
T Consensus        96 ~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~~~  128 (134)
T 2fwh_A           96 LFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP  128 (134)
T ss_dssp             EEECTTSCBCGGGCBCSCCCHHHHHHHHHHC--
T ss_pred             EEECCCCCEeeeeeeeeccCHHHHHHHHHhcCc
Confidence            9995 99776  689999999999999987653

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.74  E-value=1.2e-17  Score=124.29  Aligned_cols=98  Identities=19%  Similarity=0.240  Sum_probs=84.8

Q ss_pred             CcEEc-ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCc-CcE
Q 015368           57 DVVSL-NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILA-YPT  130 (408)
Q Consensus        57 ~~~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~-~Pt  130 (408)
                      ....+ +.++|++++.++++++|.|+|+||++|+.+.|.++++++.  .++.++.||++++++    ++.+|||++ .|+
T Consensus         7 ~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq   84 (112)
T 3iv4_A            7 VAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE--RDMDGYYLIVQQERDLSDYIAKKTNVKHESPQ   84 (112)
T ss_dssp             CEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH--HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSE
T ss_pred             ceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc--CCceEEEEEeecCchhhHHHHHHhCCccCCCe
Confidence            34445 5678999998899999999999999999999999999985  489999999999977    799999995 999


Q ss_pred             EEEEeCCeEeEE-eeCCCCHHHHHHHH
Q 015368          131 LYLFVAGVRQFQ-FFGERTRDVISAWV  156 (408)
Q Consensus       131 ~~~~~~g~~~~~-~~g~~~~~~l~~~i  156 (408)
                      +++|++|+.+.+ -.|..+.+.|.+.+
T Consensus        85 ~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           85 AFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             EEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             EEEEECCEEEEEeeccccCHHHHHHhh
Confidence            999999987766 45788998887654

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.73  E-value=1.1e-17  Score=132.47  Aligned_cols=123  Identities=15%  Similarity=0.230  Sum_probs=107.9

Q ss_pred             cCCCCceEeeccccccccccCCccEEEEEeeCC-CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCC
Q 015368          262 HTKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAY-GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVS  340 (408)
Q Consensus       262 ~~~~p~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~  340 (408)
                      ..+.|++.++|.+++..++..+.|+++.|...+ .++.+...++++|++|+++   +.|+++|.+.+   +++++.||+.
T Consensus         2 ~c~~plv~~~t~~~f~~~~~~~~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~~---~~~a~~~gi~   75 (133)
T 2djk_A            2 PLGSPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGV---INFGTIDAKAF---GAHAGNLNLK   75 (133)
T ss_dssp             CCSCCCSEECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTT---GGGTTTTTCC
T ss_pred             CcccCceeccChHHHHHHhcCCCCEEEEEecChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHHh---HHHHHHcCCC
Confidence            357899999999999998877778887776544 4889999999999999999   99999998763   4788999998


Q ss_pred             CCCCcEEEEEcc-CCccccCC--CCCChHHHHHHHHHHhcCcc--ccccccCchh
Q 015368          341 GNAPRVIAYSAR-DAKKYVLN--GELTLSSIKSFGEEFLEDKL--LNQSDQISET  390 (408)
Q Consensus       341 ~~~~p~i~i~~~-~~~~y~~~--~~~~~~~i~~Fi~~~~~gk~--~~kse~iP~~  390 (408)
                      ....|.+++++. ++++|.+.  |.++.++|.+|++++++|++  ++||||||++
T Consensus        76 ~~~iPtl~i~~~~~g~~~~~~~~g~~~~~~l~~fi~~~l~Gkl~p~~kSe~iP~~  130 (133)
T 2djk_A           76 TDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEK  130 (133)
T ss_dssp             SSSSSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCTT
T ss_pred             cccCCEEEEEecCcCcccCCCCccccCHHHHHHHHHHHHcCCcCccccCCCCCCc
Confidence            767899999985 67788886  89999999999999999999  9999999987

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.73  E-value=1.5e-17  Score=144.19  Aligned_cols=105  Identities=16%  Similarity=0.166  Sum_probs=91.7

Q ss_pred             cCCCcEEc-ChhhHHHHHc---CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCc
Q 015368           54 YAKDVVSL-NGKNFSEFMG---KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYP  129 (408)
Q Consensus        54 ~~~~~~~l-~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~P  129 (408)
                      ....+..+ +.++|...+.   ++++|+|+|||+||++|+.+.|.|.++++.+. ++.|+.||+++ .+++++|+|.++|
T Consensus       110 ~~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-~v~f~kVd~d~-~~l~~~~~I~~~P  187 (245)
T 1a0r_P          110 RYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYP-MVKFCKIKASN-TGAGDRFSSDVLP  187 (245)
T ss_dssp             CCCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-TSEEEEEEHHH-HCCTTSSCTTTCS
T ss_pred             CCCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CCEEEEEeCCc-HHHHHHCCCCCCC
Confidence            34578888 7899998884   37899999999999999999999999999997 59999999987 7799999999999


Q ss_pred             EEEEEeCCeEeEEeeCC-------CCHHHHHHHHHhHh
Q 015368          130 TLYLFVAGVRQFQFFGE-------RTRDVISAWVREKM  160 (408)
Q Consensus       130 t~~~~~~g~~~~~~~g~-------~~~~~l~~~i~~~~  160 (408)
                      |+++|++|+.+.++.|.       .+.+.|..||.++.
T Consensus       188 Tll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g  225 (245)
T 1a0r_P          188 TLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYG  225 (245)
T ss_dssp             EEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred             EEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHcC
Confidence            99999999888888775       35678888888764

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.73  E-value=6e-18  Score=122.88  Aligned_cols=83  Identities=17%  Similarity=0.353  Sum_probs=77.2

Q ss_pred             CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHH
Q 015368           74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS  153 (408)
Q Consensus        74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~  153 (408)
                      .+++|.||++||++|+++.|.++++++++++++.++.||++++++++++|++.++||+++  +|+.  ++.|..+.+++.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~   78 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV--EFIGAPTKEALV   78 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE--ECCSSSSSHHHH
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE--eeecCCCHHHHH
Confidence            478999999999999999999999999998889999999999999999999999999988  8965  889999999999


Q ss_pred             HHHHhHh
Q 015368          154 AWVREKM  160 (408)
Q Consensus       154 ~~i~~~~  160 (408)
                      +++++.+
T Consensus        79 ~~l~~~l   85 (85)
T 1fo5_A           79 EAIKKRL   85 (85)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998753

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.73  E-value=6.1e-18  Score=144.92  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=92.2

Q ss_pred             CCCcEEc-ChhhHHHHHcC---CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           55 AKDVVSL-NGKNFSEFMGK---NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        55 ~~~~~~l-~~~~~~~~~~~---~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      ...+..+ +.++|...+..   +++++|.|||+||++|+.+.|.|.++++.+. ++.|+.||++ ++.++++|+|.++||
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~~-~~~l~~~~~i~~~PT  175 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRAS-NTGAGDRFSSDVLPT  175 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHH-HHTCSTTSCGGGCSE
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEECC-cHHHHHHCCCCCCCE
Confidence            4568888 89999988743   3899999999999999999999999999986 8999999999 888999999999999


Q ss_pred             EEEEeCCeEeEEeeCCCCH-------HHHHHHHHhH
Q 015368          131 LYLFVAGVRQFQFFGERTR-------DVISAWVREK  159 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~~~~-------~~l~~~i~~~  159 (408)
                      +++|++|+.+.++.|..+.       ++|..||.++
T Consensus       176 l~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          176 LLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHc
Confidence            9999999988999997764       8899998765

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.73  E-value=5e-17  Score=140.63  Aligned_cols=101  Identities=23%  Similarity=0.398  Sum_probs=92.7

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEec--CCChhHHhhhHHHHHHHHHhcC--CcEEEEEe-----CcccHhHHHHcCCC
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYA--NWCYWSKKLAPEFAAAAKMLKG--EADLVMVD-----AYLEKDLAKEYNIL  126 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a--~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~-----~~~~~~~~~~~~i~  126 (408)
                      ..+..|++.+|+..+.++++++|.|||  |||+    +.|.|+++++.+++  ++.|+.||     |++++++|++|+|+
T Consensus         5 ~~v~~Lt~~nF~~~i~~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~   80 (240)
T 2qc7_A            5 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLD   80 (240)
T ss_dssp             TTCEECCTTHHHHHGGGCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCC
T ss_pred             CCceECCHHHHHHHHcCCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCC
Confidence            468899999999988888999999999  9999    99999999999964  79999999     45589999999999


Q ss_pred             --cCcEEEEEeCCe--EeEEeeCCCCHHHHHHHHHhHh
Q 015368          127 --AYPTLYLFVAGV--RQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       127 --~~Pt~~~~~~g~--~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                        ++||+++|++|+  .+.+|.|.++.+.|.+||.+..
T Consensus        81 ~~~~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           81 KESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             GGGCSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence              999999999996  4789999999999999999885

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.73  E-value=5.5e-18  Score=140.71  Aligned_cols=101  Identities=13%  Similarity=0.146  Sum_probs=83.2

Q ss_pred             EcChhhHHHHH----cCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcccHhH-------------
Q 015368           60 SLNGKNFSEFM----GKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEKDL-------------  119 (408)
Q Consensus        60 ~l~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~~~-------------  119 (408)
                      ..+..+|++.+    .++++++|+|||+||++|+.+.+.+   .++.+.+++++.++.||++++.++             
T Consensus        30 ~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~  109 (172)
T 3f9u_A           30 HAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTER  109 (172)
T ss_dssp             CCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEE
T ss_pred             ccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhh
Confidence            34455566544    6799999999999999999975444   556665555799999999877655             


Q ss_pred             -------------HHHcCCCcCcEEEEEe-CCeEeEEeeCCCC-HHHHHHHHHhHh
Q 015368          120 -------------AKEYNILAYPTLYLFV-AGVRQFQFFGERT-RDVISAWVREKM  160 (408)
Q Consensus       120 -------------~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~-~~~l~~~i~~~~  160 (408)
                                   +++|+|.++||+++++ +|+++.++.|..+ .+++.++|++.+
T Consensus       110 ~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l  165 (172)
T 3f9u_A          110 TLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGL  165 (172)
T ss_dssp             EEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHH
Confidence                         7999999999999996 9998899999998 999999998765

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.72  E-value=8.3e-18  Score=122.14  Aligned_cols=82  Identities=21%  Similarity=0.390  Sum_probs=76.5

Q ss_pred             cEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHH
Q 015368           75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA  154 (408)
Q Consensus        75 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~  154 (408)
                      ..+|.||++||++|+++.|.++++++++++++.++.||++++++++++|+|.++||+++  +|+.  ++.|..+.+.+.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~~~~l~~   78 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV--RFVGAPSREELFE   78 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE--EEECSSCCHHHHH
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE--EEccCCCHHHHHH
Confidence            46899999999999999999999999998889999999999999999999999999988  8865  8899999999999


Q ss_pred             HHHhHh
Q 015368          155 WVREKM  160 (408)
Q Consensus       155 ~i~~~~  160 (408)
                      ++++.+
T Consensus        79 ~l~~~l   84 (85)
T 1nho_A           79 AINDEM   84 (85)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            998765

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.72  E-value=7.9e-17  Score=129.97  Aligned_cols=103  Identities=17%  Similarity=0.257  Sum_probs=91.7

Q ss_pred             EEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc------------------------
Q 015368           59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY------------------------  114 (408)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~------------------------  114 (408)
                      ..++++.++....++++++|.||++||++|+.+.|.+.++++++++++.++.|+++                        
T Consensus        15 ~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (148)
T 2b5x_A           15 AWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPI   94 (148)
T ss_dssp             EEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCE
T ss_pred             ccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcce
Confidence            56778777766667899999999999999999999999999999877999999964                        


Q ss_pred             ---ccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          115 ---LEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       115 ---~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                         .+.++++.|+|.++|++++++ +|+++.++.|..+.+++.++|++.+.
T Consensus        95 ~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  145 (148)
T 2b5x_A           95 FVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA  145 (148)
T ss_dssp             EECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHT
T ss_pred             EECCchhHHHHhCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHh
Confidence               456899999999999999996 99888999999999999999998764

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.72  E-value=1.1e-18  Score=137.92  Aligned_cols=105  Identities=27%  Similarity=0.400  Sum_probs=93.7

Q ss_pred             CCcEEc-ChhhHHHHHc----CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           56 KDVVSL-NGKNFSEFMG----KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        56 ~~~~~l-~~~~~~~~~~----~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      ..+..+ +.++|+..+.    ++++++|.||++||++|+.+.|.++++++.++ ++.++.||++++++++++|+|.++||
T Consensus        14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~~~~~~~~~~~v~~~Pt   92 (130)
T 1wmj_A           14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-GAVFLKVDVDELKEVAEKYNVEAMPT   92 (130)
T ss_dssp             SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-TBCCEECCTTTSGGGHHHHTCCSSCC
T ss_pred             cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CCEEEEEeccchHHHHHHcCCCccce
Confidence            456667 4688887774    48999999999999999999999999999987 79999999999999999999999999


Q ss_pred             EEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          131 LYLFVAGVRQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      ++++++|+.+.++.| .+.+.+.++|.+.+..
T Consensus        93 ~~~~~~g~~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           93 FLFIKDGAEADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             CCBCTTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             EEEEeCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence            999999988888889 5888999999988754

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.71  E-value=3.3e-17  Score=130.23  Aligned_cols=101  Identities=17%  Similarity=0.308  Sum_probs=86.3

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc----------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----------------------  115 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----------------------  115 (408)
                      +.+++++.++....++++++|.||++||++|+.+.|.+.+++++++ ++.++.|+++.                      
T Consensus         9 l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~   87 (136)
T 1lu4_A            9 ATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDA   87 (136)
T ss_dssp             EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECT
T ss_pred             eecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECC
Confidence            3344444444333468999999999999999999999999999998 89999999987                      


Q ss_pred             cHhHHHHcCCCcCcEEEEEe-CCeEeEEee---CCCCHHHHHHHHHhHh
Q 015368          116 EKDLAKEYNILAYPTLYLFV-AGVRQFQFF---GERTRDVISAWVREKM  160 (408)
Q Consensus       116 ~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~---g~~~~~~l~~~i~~~~  160 (408)
                      +.+++++|++.++|++++++ +|++. ++.   |..+.+.+.++|++.+
T Consensus        88 ~~~~~~~~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           88 DGVIWARYNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             TSHHHHHTTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred             chhHHHhcCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHHh
Confidence            67899999999999999997 89887 999   9999999999998754

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.71  E-value=2.2e-17  Score=128.90  Aligned_cols=101  Identities=14%  Similarity=0.237  Sum_probs=87.0

Q ss_pred             CcEEcChhhHHHHHcC--CCcEEEEEecC-------CChhHHhhhHHHHHHHHHhcCCcEEEEEeC-------cccHhHH
Q 015368           57 DVVSLNGKNFSEFMGK--NRNVMVMFYAN-------WCYWSKKLAPEFAAAAKMLKGEADLVMVDA-------YLEKDLA  120 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~--~~~~~v~f~a~-------wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~-------~~~~~~~  120 (408)
                      .+...+.++|+..+.+  +++++|+|||+       ||++|+.+.|.++++++.+++++.|+.||+       +.+.+++
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~   85 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFR   85 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHH
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHH
Confidence            4556788999988855  89999999999       999999999999999999987999999999       7888999


Q ss_pred             HHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHh
Q 015368          121 KEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       121 ~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                      ++|+|.++||+++|++|.....+.| .+.+.+.++|.+
T Consensus        86 ~~~~i~~~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           86 KNLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             HHHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHHC
T ss_pred             HHCCCCeeCEEEEEcCCceEecccc-CCHHHHHHHHhc
Confidence            9999999999999998745444444 567888888864

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.71  E-value=5.8e-17  Score=131.75  Aligned_cols=97  Identities=15%  Similarity=0.367  Sum_probs=83.2

Q ss_pred             hhHHHHHcCCCcEEEEEe-cCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCccc-----------HhHHHHcCCCcC
Q 015368           64 KNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLE-----------KDLAKEYNILAY  128 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~-----------~~~~~~~~i~~~  128 (408)
                      +.+.....++++++|+|| |+||++|+.+.|.+   .++.+.++.++.++.||+++.           .+++++|+|.++
T Consensus        38 ~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~  117 (154)
T 2ju5_A           38 EALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGF  117 (154)
T ss_dssp             HHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCC
Confidence            334444456899999999 99999999999999   788776655899999999765           489999999999


Q ss_pred             cEEEEEe-CCeEeEEeeCCC--CHHHHHHHHHhHhC
Q 015368          129 PTLYLFV-AGVRQFQFFGER--TRDVISAWVREKMT  161 (408)
Q Consensus       129 Pt~~~~~-~g~~~~~~~g~~--~~~~l~~~i~~~~~  161 (408)
                      ||+++++ +|+++.++ |..  +.+.+.++|++.+.
T Consensus       118 Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~  152 (154)
T 2ju5_A          118 PELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALK  152 (154)
T ss_dssp             SEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence            9999996 99888899 988  99999999988764

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.71  E-value=4.3e-17  Score=128.98  Aligned_cols=106  Identities=18%  Similarity=0.242  Sum_probs=95.8

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCc--CcEEEEE
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA--YPTLYLF  134 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~--~Pt~~~~  134 (408)
                      .+.++|..+|+..+..+.+++|+|||+ |++|+.+.|.++++|+++++++.|+.||.++++++++.|||++  +||++++
T Consensus         7 lv~~~t~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~   85 (133)
T 2djk_A            7 LIGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQ   85 (133)
T ss_dssp             CSEECCHHHHHHHHHTTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEE
T ss_pred             ceeccChHHHHHHhcCCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEE
Confidence            477899999998888889999999999 8999999999999999999999999999999999999999999  9999999


Q ss_pred             eC--CeEeEEee--CCCCHHHHHHHHHhHhCCCc
Q 015368          135 VA--GVRQFQFF--GERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       135 ~~--g~~~~~~~--g~~~~~~l~~~i~~~~~~~~  164 (408)
                      ++  |+. .+..  |..+.+.|.+|+++.+...+
T Consensus        86 ~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~Gkl  118 (133)
T 2djk_A           86 EVAKNQK-FPFDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             CTTTCCB-CCCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             ecCcCcc-cCCCCccccCHHHHHHHHHHHHcCCc
Confidence            96  644 5665  99999999999998875443

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.70  E-value=7.3e-17  Score=128.16  Aligned_cols=102  Identities=18%  Similarity=0.261  Sum_probs=87.4

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc---------------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---------------------  115 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~---------------------  115 (408)
                      .+..++++.++.....+++++|.||++||++|+.+.|.+.+++++++ ++.++.|+++.                     
T Consensus         9 ~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   87 (136)
T 1zzo_A            9 SAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLA   87 (136)
T ss_dssp             EEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             ccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEE
Confidence            34445555554333468999999999999999999999999999998 89999999854                     


Q ss_pred             --cHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          116 --EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       116 --~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                        +..+++.|++.++|++++++ +|++. ++.|..+.+++.++|++.+
T Consensus        88 d~~~~~~~~~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~l  134 (136)
T 1zzo_A           88 DTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALT  134 (136)
T ss_dssp             CTTCHHHHHTTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHHC
T ss_pred             cCCcHHHHHcCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHHh
Confidence              56789999999999999997 89887 9999999999999998876

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.70  E-value=1.1e-17  Score=126.42  Aligned_cols=89  Identities=16%  Similarity=0.163  Sum_probs=73.4

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCccc--HhHHHHcCCCcCcEEEEEeCCeEeEEeeCCC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLE--KDLAKEYNILAYPTLYLFVAGVRQFQFFGER  147 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~  147 (408)
                      +...++|+|||+||++|+.+.+.+....+...  ..+.+..||++++  .+++.+++|.++||+++|++|+++.+..|..
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~G~~   96 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLEGYP   96 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEECCC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeecCCC
Confidence            45789999999999999999875543322210  0378899999886  5789999999999999999999999999999


Q ss_pred             CHHHHHHHHHhHh
Q 015368          148 TRDVISAWVREKM  160 (408)
Q Consensus       148 ~~~~l~~~i~~~~  160 (408)
                      ..+.|..|+.+.+
T Consensus        97 ~~~~f~~~L~~~l  109 (116)
T 3dml_A           97 GEDFFWPMLARLI  109 (116)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998775

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.69  E-value=1.5e-16  Score=130.99  Aligned_cols=105  Identities=22%  Similarity=0.338  Sum_probs=90.9

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHc------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEY------------  123 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~------------  123 (408)
                      .+.+++++.++....++++++|.||++||++|+.+.|.+.++++++++ ++.++.|+++.+.+.+++|            
T Consensus        18 ~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~   97 (165)
T 3or5_A           18 SGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMM   97 (165)
T ss_dssp             EEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEE
T ss_pred             eeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEe
Confidence            344556665554444789999999999999999999999999999987 5999999999887777666            


Q ss_pred             ---------------CCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          124 ---------------NILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       124 ---------------~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                                     ++.++|++++++ +|+++.++.|..+.+++.++|++.+.
T Consensus        98 ~~~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  151 (165)
T 3or5_A           98 ATPELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALG  151 (165)
T ss_dssp             CCHHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHh
Confidence                           899999999997 99888999999999999999998875

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.52  E-value=1.8e-18  Score=136.58  Aligned_cols=99  Identities=20%  Similarity=0.331  Sum_probs=86.7

Q ss_pred             hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCc--ccHhHHHHcCCCcCcEEEEE--e
Q 015368           63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLF--V  135 (408)
Q Consensus        63 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~--~  135 (408)
                      .+.+.....++++++|+|||+||++|+.+.|.+   .++++.+++++.++.||++  ++.+++++|+|.++||+++|  +
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~   88 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPK   88 (130)
Confidence            344555556789999999999999999999999   9999988878999999994  66889999999999999999  4


Q ss_pred             CCeE--eEEeeCCCCHHHHHHHHHhHhC
Q 015368          136 AGVR--QFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       136 ~g~~--~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      +|+.  +.++.|..+.+.|.++|++.+.
T Consensus        89 ~G~~~~~~~~~G~~~~~~l~~~l~~~~~  116 (130)
T 2lst_A           89 AGAWEEVGRLFGSRPRAEFLKELRQVCV  116 (130)
Confidence            6877  7889999999999999988774

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.68  E-value=3.6e-16  Score=127.97  Aligned_cols=102  Identities=15%  Similarity=0.234  Sum_probs=86.6

Q ss_pred             cChhhHHHHHcCCCcEEEEEecCCChhHHhh-hHHHHHHHHHhcC-CcEEEEEeCc------------------------
Q 015368           61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKL-APEFAAAAKMLKG-EADLVMVDAY------------------------  114 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~-~p~~~~~~~~~~~-~v~~~~v~~~------------------------  114 (408)
                      ++++.+...-.++++++|.||++||++|+.+ +|.+.++++++++ ++.++.|+++                        
T Consensus        18 ~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (160)
T 3lor_A           18 VNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFP   97 (160)
T ss_dssp             SSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSC
T ss_pred             cCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCc
Confidence            4555554333468999999999999999995 9999999999987 6999999862                        


Q ss_pred             ----ccHh------HHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          115 ----LEKD------LAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       115 ----~~~~------~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                          ....      +++.|++.++|++++++ +|+++.++.|..+.+.+.++|++.+..
T Consensus        98 ~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A           98 VAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             EEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             EEECCccccchhhhHHHhcccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence                3334      89999999999999998 999999999999999999999988743

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.68  E-value=2.5e-17  Score=124.35  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=66.2

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc------ccHhHHHHcCCCcCcEEEEEeCCeEeEEee
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY------LEKDLAKEYNILAYPTLYLFVAGVRQFQFF  144 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~  144 (408)
                      ..+++++|+|||+||++|+.+.|.|+++++.++      .|||+      +++++|++|+|+++||+++  +|+   .+.
T Consensus        10 ~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--~G~---~~~   78 (106)
T 3kp8_A           10 HLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR---TYT   78 (106)
T ss_dssp             HHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSSSEEEE--TTE---EEE
T ss_pred             hcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEeCEEEE--CCE---Eec
Confidence            345778999999999999999999999997764      56666      6788999999999999777  885   389


Q ss_pred             CCCCHHHHHHHHHh
Q 015368          145 GERTRDVISAWVRE  158 (408)
Q Consensus       145 g~~~~~~l~~~i~~  158 (408)
                      |.++.++|.+|+.-
T Consensus        79 G~~~~~~l~~~~~~   92 (106)
T 3kp8_A           79 GVRSLEALAVASGY   92 (106)
T ss_dssp             SCCCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHhCC
Confidence            99999999999753

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.68  E-value=8.7e-18  Score=157.78  Aligned_cols=97  Identities=28%  Similarity=0.381  Sum_probs=83.5

Q ss_pred             CCCcEEcChhhHHHHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--------CcEEEEEeCcccHhHHHHcC
Q 015368           55 AKDVVSLNGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--------EADLVMVDAYLEKDLAKEYN  124 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--------~v~~~~v~~~~~~~~~~~~~  124 (408)
                      ...+..++.++|+..+.+  +++++|+|||+||++|+.+.|.|+++++.+++        ++.|+.|||++++++|++|+
T Consensus        22 ~~~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~  101 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYD  101 (470)
T ss_dssp             CTTEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTT
T ss_pred             CCCcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcC
Confidence            467899999999988754  37999999999999999999999999999973        49999999999999999999


Q ss_pred             CCcCcEEEEEeCC--eEeEEeeCCCCHHH
Q 015368          125 ILAYPTLYLFVAG--VRQFQFFGERTRDV  151 (408)
Q Consensus       125 i~~~Pt~~~~~~g--~~~~~~~g~~~~~~  151 (408)
                      |.++||+++|++|  ....+|.|.++.+.
T Consensus       102 V~~~PTlilf~~gg~~~~~~y~G~r~~e~  130 (470)
T 3qcp_A          102 INFVPRLFFFYPRDSCRSNEECGTSSLEH  130 (470)
T ss_dssp             CCSSCEEEEEEESSCCCTTSCCCCCCEEE
T ss_pred             CCccCeEEEEECCCceEEEEeeCCCCHHH
Confidence            9999999999843  34567777655443

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.68  E-value=5.9e-15  Score=127.99  Aligned_cols=196  Identities=13%  Similarity=0.176  Sum_probs=152.2

Q ss_pred             CcEEc-ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSL-NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      .+..| +.++++..+.++++++|-|+++||   ....+.|.++|+.+. ++.|+.+.   +.++|+++++++ |++++|+
T Consensus        10 ~~~~l~s~~~~~~~l~~~~v~vVgff~~~~---~~~~~~f~~~A~~l~-~~~F~~t~---~~~v~~~~~v~~-p~i~lfk   81 (227)
T 4f9z_D           10 EPTWLTDVPAAMEFIAATEVAVIGFFQDLE---IPAVPILHSMVQKFP-GVSFGIST---DSEVLTHYNITG-NTICLFR   81 (227)
T ss_dssp             CCEECCSHHHHHHHHHTSSEEEEEECSCSC---STHHHHHHHHTTTCT-TSEEEEEC---CHHHHHHTTCCS-SEEEEEE
T ss_pred             CCeeeCCHHHHHHHHhcCCeEEEEEecCCC---chhHHHHHHHHHhCC-CceEEEEC---CHHHHHHcCCCC-CeEEEEE
Confidence            44455 668999999889999999999995   568999999999994 89998764   788999999998 9999999


Q ss_pred             CC-eEeEEeeC----CCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEE-EEecCCCCc---CHHHHHHHh-cc
Q 015368          136 AG-VRQFQFFG----ERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVL-GFLHDLEGM---ESEELAAAS-KL  205 (408)
Q Consensus       136 ~g-~~~~~~~g----~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi-~f~~~~~~~---~~~~~~~~a-~~  205 (408)
                      ++ .....|.|    .++.+.|.+||..+..|.+.++ +.+.+..+.....+.++ .|...++..   ..+.+..+| ++
T Consensus        82 ~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~-t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~  160 (227)
T 4f9z_D           82 LVDNEQLNLEDEDIESIDATKLSRFIEINSLHMVTEY-NPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLF  160 (227)
T ss_dssp             TTTTEEEEECHHHHHTCCHHHHHHHHHHHCCCSEEEC-CHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHT
T ss_pred             ecCcccccccccccCCCCHHHHHHHHHHhCCCceeec-CcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHh
Confidence            54 34567774    7999999999999999999998 56777777766544444 454555543   345677777 68


Q ss_pred             CCceeEEEecC-----HhHHhhcCCCCCCCCCeEEEeecCCCccccc-CCcCCHHHHHHHHhc
Q 015368          206 HSDVNFYQTTS-----ADVAEFFHIHPKSKRPALIFLHLEAGKATPF-RHQFTRLAIANFVTH  262 (408)
Q Consensus       206 ~~~~~f~~~~~-----~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y-~g~~~~~~i~~fi~~  262 (408)
                      ++++.|+.+..     ..+.+.||++. .++|++++++..+.....+ .++++.+.|.+|++.
T Consensus       161 k~~i~F~~vd~~~~~~~~~l~~fgl~~-~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~  222 (227)
T 4f9z_D          161 QGKILFILVDSGMKENGKVISFFKLKE-SQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDG  222 (227)
T ss_dssp             TTTCEEEEEETTSGGGHHHHHHTTCCG-GGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHH
T ss_pred             hCCEEEEEeCCccHhHHHHHHHcCCCc-ccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHH
Confidence            88899987643     35788999973 2589999998665444444 378999999999975

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.68  E-value=1.6e-16  Score=128.76  Aligned_cols=92  Identities=23%  Similarity=0.366  Sum_probs=83.3

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------cHhHHHHcCCCcC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------EKDLAKEYNILAY  128 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------~~~~~~~~~i~~~  128 (408)
                      ++++++|.||++||++|+.+.|.+.++++.+++ ++.++.|+++.                      +..+++.|+|.++
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            679999999999999999999999999999987 79999999876                      3478999999999


Q ss_pred             cEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhCCC
Q 015368          129 PTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                      |++++++ +|+++.++.|..+.+.+.++|++.+...
T Consensus       105 P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~  140 (151)
T 2f9s_A          105 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGE  140 (151)
T ss_dssp             CEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC-
T ss_pred             CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhh
Confidence            9999996 9999999999999999999999887543

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.68  E-value=1.9e-16  Score=137.80  Aligned_cols=101  Identities=14%  Similarity=0.187  Sum_probs=90.3

Q ss_pred             CcEEcChhhHHHHHcCCCcE-EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSLNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~-~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      .+..+++++|+.....++++ +|.|||+||++|+.+.|.++++++.+ +++.++.||++++++++++|+|.++||+++  
T Consensus       119 ~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--  195 (229)
T 2ywm_A          119 RKPQLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALAN-DYITSKVIDASENQDLAEQFQVVGVPKIVI--  195 (229)
T ss_dssp             TCCSCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHC-TTEEEEEEEGGGCHHHHHHTTCCSSSEEEE--
T ss_pred             CccCCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHC-CCeEEEEEECCCCHHHHHHcCCcccCEEEE--
Confidence            45678889998877666666 88999999999999999999999998 489999999999999999999999999988  


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      +|+ +.++.|..+.+.|.+|+.+.+.
T Consensus       196 ~G~-~~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          196 NKG-VAEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             GGG-TEEEESCCCHHHHHHHHHHHHH
T ss_pred             CCE-EEEeeCCCCHHHHHHHHHHHhh
Confidence            886 6779999999999999988763

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.67  E-value=3e-16  Score=128.18  Aligned_cols=92  Identities=12%  Similarity=0.156  Sum_probs=81.8

Q ss_pred             cCCCcEEEEEecCCChhHHhh-hHHHHHHHHHhcC-CcEEEEEeCc----------------------------ccH---
Q 015368           71 GKNRNVMVMFYANWCYWSKKL-APEFAAAAKMLKG-EADLVMVDAY----------------------------LEK---  117 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~-~p~~~~~~~~~~~-~v~~~~v~~~----------------------------~~~---  117 (408)
                      .++++++|+||++||++|+.+ +|.+.++++++++ ++.++.|+++                            ...   
T Consensus        26 ~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  105 (158)
T 3eyt_A           26 LRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGA  105 (158)
T ss_dssp             GTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSS
T ss_pred             hCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchh
Confidence            368999999999999999996 9999999999985 7999999863                            122   


Q ss_pred             --hHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          118 --DLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       118 --~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                        .+++.|++.++|++++++ +|+++.++.|..+.+.+.+.|++.+..
T Consensus       106 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          106 MPRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence              589999999999999997 999999999999999999999988753

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.67  E-value=1.8e-16  Score=130.31  Aligned_cols=105  Identities=21%  Similarity=0.270  Sum_probs=89.4

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeC----------------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA----------------------  113 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~----------------------  113 (408)
                      .+.+++++.++....++++++|+||++||++|+.++|.+.+++++++. ++.++.|++                      
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~  101 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYP  101 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCC
Confidence            566777777776556789999999999999999999999999998754 677766654                      


Q ss_pred             ------cccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          114 ------YLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       114 ------~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                            +.+.+++++|+|.++|++++++ +|+++.++.|..+.+++.++|++.+.
T Consensus       102 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~~  156 (164)
T 2h30_A          102 KLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPNA  156 (164)
T ss_dssp             TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred             cceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence                  3456789999999999999996 99999999999999999999988764

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.67  E-value=2e-16  Score=128.28  Aligned_cols=93  Identities=18%  Similarity=0.193  Sum_probs=82.7

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc------------------------cHhHHHHcC-
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL------------------------EKDLAKEYN-  124 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~------------------------~~~~~~~~~-  124 (408)
                      .++++++|+|||+||++|+.++|.+.++++++++ ++.++.|+++.                        ...+++.|+ 
T Consensus        22 ~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (151)
T 3raz_A           22 LKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGN  101 (151)
T ss_dssp             CCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTC
T ss_pred             hCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCC
Confidence            3689999999999999999999999999999965 89999999973                        345778899 


Q ss_pred             -CCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhCCC
Q 015368          125 -ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       125 -i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                       +.++|++++++ +|+++.++.|..+.+++.++|++.....
T Consensus       102 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~  142 (151)
T 3raz_A          102 TVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKC  142 (151)
T ss_dssp             CSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC-
T ss_pred             ccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence             99999999997 8999999999999999999999887543

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.66  E-value=1.7e-16  Score=127.56  Aligned_cols=85  Identities=27%  Similarity=0.502  Sum_probs=78.8

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhc-CCcEEEEEeCcc-------------------------cHhHHHHcCC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK-GEADLVMVDAYL-------------------------EKDLAKEYNI  125 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~-~~v~~~~v~~~~-------------------------~~~~~~~~~i  125 (408)
                      ++++++|.||++||++|+.+.|.+.+++++++ .++.++.|+++.                         +..+++.|++
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            68999999999999999999999999999998 489999999964                         5689999999


Q ss_pred             CcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHH
Q 015368          126 LAYPTLYLFV-AGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       126 ~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i  156 (408)
                      .++|++++++ +|+++.++.|..+.+.+.++|
T Consensus       113 ~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A          113 ITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             CEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             CccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            9999999996 998889999999999999887

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.66  E-value=3.2e-17  Score=134.64  Aligned_cols=97  Identities=19%  Similarity=0.309  Sum_probs=83.7

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh-HHHHcCC--CcCcEEEEEe-CCeE
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD-LAKEYNI--LAYPTLYLFV-AGVR  139 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~-~~~~~~i--~~~Pt~~~~~-~g~~  139 (408)
                      ++++....++++++|+|||+||++|+.+.|.+.++++.+..++.|+.||++.+.+ ++..|++  .++||+++|+ +|++
T Consensus        37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~  116 (164)
T 1sen_A           37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKV  116 (164)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCB
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCE
Confidence            5666677789999999999999999999999999877765568888899988877 8899998  6699999995 9988


Q ss_pred             eEEeeCC----------CCHHHHHHHHHhHh
Q 015368          140 QFQFFGE----------RTRDVISAWVREKM  160 (408)
Q Consensus       140 ~~~~~g~----------~~~~~l~~~i~~~~  160 (408)
                      +.++.|.          .+.+.+.++|++.+
T Consensus       117 ~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A          117 HPEIINENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             CTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence            8888884          78999999998776

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.66  E-value=1e-15  Score=134.01  Aligned_cols=100  Identities=16%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             cChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhc----CCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           61 LNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK----GEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        61 l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      ++.+.++.+. ..++++++.||||||++|+.+.|.|++++..++    .++.+..||++++++++++|+|.++||+++  
T Consensus       125 l~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~~i--  202 (243)
T 2hls_A          125 LEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSIAI--  202 (243)
T ss_dssp             CCHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEEEE--
T ss_pred             CCHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeEEE--
Confidence            4555555443 246678999999999999999999999999983    479999999999999999999999999988  


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHhCCCc
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~~~~~  164 (408)
                      +|+.  .|.|.++.++|.++|.+.++...
T Consensus       203 ~G~~--~~~G~~~~~~l~~~l~~~~~~~~  229 (243)
T 2hls_A          203 NGYL--VFVGVPYEEDFLDYVKSAAEGRL  229 (243)
T ss_dssp             TTEE--EEESCCCHHHHHHHHHHHHTTCC
T ss_pred             CCEE--EEeCCCCHHHHHHHHHHHhhccc
Confidence            8864  39999999999999999986543

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.65  E-value=2.7e-16  Score=127.55  Aligned_cols=106  Identities=18%  Similarity=0.228  Sum_probs=90.0

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccH-------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEK-------------------  117 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~-------------------  117 (408)
                      +..++++.+...-..+++++|.||++||++|+.+.|.+.++++++++ ++.++.|+++.+.                   
T Consensus        15 l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~   94 (152)
T 2lja_A           15 YPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHM   94 (152)
T ss_dssp             EEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEEC
T ss_pred             eecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeec
Confidence            44444444432223679999999999999999999999999999987 6999999998765                   


Q ss_pred             ----hHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhCCC
Q 015368          118 ----DLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       118 ----~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                          .+++.|++.++|++++++ +|+++.++.|..+.+.+.++|++.....
T Consensus        95 d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  145 (152)
T 2lja_A           95 GTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLE  145 (152)
T ss_dssp             SSCTHHHHHTTCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCC
T ss_pred             CcchhHHHHcCcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhccc
Confidence                789999999999999998 9988888999999999999999887544

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.65  E-value=2.1e-16  Score=127.54  Aligned_cols=103  Identities=13%  Similarity=0.175  Sum_probs=85.8

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHh------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKD------------------  118 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~------------------  118 (408)
                      +..++++.+...-..+++++|.||++||++|+.+.|.+.++++.+++ ++.++.|+++.+.+                  
T Consensus        16 l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~   95 (148)
T 3hcz_A           16 MTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVR   95 (148)
T ss_dssp             CBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEE
T ss_pred             EecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEe
Confidence            33445554443334789999999999999999999999999999987 59999999997766                  


Q ss_pred             -------HHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          119 -------LAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       119 -------~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                             +++.|++.++|++++++ +|+++.++.|..+.+.+.+.+.+.+
T Consensus        96 d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~l~~~l  145 (148)
T 3hcz_A           96 DSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL  145 (148)
T ss_dssp             CTTCCCCHHHHHCCCSSCEEEEECTTCBEEEESCCGGGHHHHHHHHHHHH
T ss_pred             ccccchhHHHhcCcCCCCEEEEECCCCcEEEecCCHHHHHHHHHHHHHHh
Confidence                   99999999999999996 9999999999877777777766543

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.65  E-value=2.1e-14  Score=139.82  Aligned_cols=297  Identities=15%  Similarity=0.175  Sum_probs=215.7

Q ss_pred             CcEEcChhhHHHHHcCCC--cEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           57 DVVSLNGKNFSEFMGKNR--NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~--~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      .+..++.  ++.++..++  .++|.|+.++...   ..+.|.+++..+++++.|+.++     ++++++++.    ++++
T Consensus       124 ~v~~i~~--~~~~~~~~~~~~~~v~~f~~~~~~---~~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~----i~l~  189 (504)
T 2b5e_A          124 AVAVVAD--LPAYLANETFVTPVIVQSGKIDAD---FNATFYSMANKHFNDYDFVSAE-----NADDDFKLS----IYLP  189 (504)
T ss_dssp             SEEECSC--HHHHHHHSCCSSCEEEEEESCCHH---HHHHHHHHHHHTTTTCEEEEEE-----CTTSCCEEE----EEET
T ss_pred             cceeHHH--HHHHHhcCCCceEEEEEeCCCCch---HHHHHHHHHHHhhcCcEEEEEH-----HHHHhcCCe----EEec
Confidence            4555555  666665555  6677777776544   5678999999998899999887     467777765    6667


Q ss_pred             eCCeEeEEeeCC-C---CHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCC--cCHHHHHHHh-ccCC
Q 015368          135 VAGVRQFQFFGE-R---TRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEG--MESEELAAAS-KLHS  207 (408)
Q Consensus       135 ~~g~~~~~~~g~-~---~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~--~~~~~~~~~a-~~~~  207 (408)
                      ++......|.|. .   +.+.|.+||.....|.+.++ +.+.+..+.......++.++...+.  .....+..+| ++++
T Consensus       190 ~~~~~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~-t~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~a~~~~~  268 (504)
T 2b5e_A          190 SAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEI-DGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRG  268 (504)
T ss_dssp             TEEEEEEECCSCHHHHTSHHHHHHHHHHHSSCSSCBC-CHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCcccccCCcccccCCHHHHHHHHHhcccCCcccC-CHhHHHHHhcCCCcEEEEEecCcccHHHHHHHHHHHHHhcCC
Confidence            642255678898 6   99999999999998888888 5677888887777777766654222  1344566666 6788


Q ss_pred             ceeEEEecCH---hHHhhcCCCCCCCCCeEEEeecCCCcccccC--Cc-----------CCHHHHHHHHhcCC-------
Q 015368          208 DVNFYQTTSA---DVAEFFHIHPKSKRPALIFLHLEAGKATPFR--HQ-----------FTRLAIANFVTHTK-------  264 (408)
Q Consensus       208 ~~~f~~~~~~---~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~--g~-----------~~~~~i~~fi~~~~-------  264 (408)
                      ++.|+.+...   .+++.||+ . ...|++++++..+...+.+.  ++           ++.+.+.+|+....       
T Consensus       269 ~i~F~~id~~~~~~~~~~~gl-~-~~~P~v~i~~~~~~~ky~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~~~g~~~p~  346 (504)
T 2b5e_A          269 LMNFVSIDARKFGRHAGNLNM-K-EQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPI  346 (504)
T ss_dssp             TCEEEEEEHHHHTTHHHHTTC-C-SCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCCC
T ss_pred             eeEEEEEehhhhHHHHHHcCC-c-ccCCEEEEEeCCcCcccCCCCCccchhhccccccccCHHHHHHHHHHHHcCCCChh
Confidence            8999887443   46788998 2 36899999987544444444  55           78899999987421       


Q ss_pred             -----C-----CceEeecccccccccc-CCccE-EEEEeeCCC-chHHHHHHHHHHHHhc-C--CcceEEEEEEEcCCcc
Q 015368          265 -----H-----PLVVTLTIHNAQFVFQ-DPRKQ-LWLFAPAYG-SDKVILTFEEVAKALK-G--KVNMLLHVYVEMNSEG  328 (408)
Q Consensus       265 -----~-----p~v~~lt~~~~~~~~~-~~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~-~--~~~~i~f~~vd~~~~~  328 (408)
                           .     ..+..++..++..... .+.++ +.++.+||. |+...+.+.++|.++. +  +   +.++.+|++...
T Consensus       347 ~~s~~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~---v~~~~vd~~~~~  423 (504)
T 2b5e_A          347 VKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSD---VLIAKLDHTEND  423 (504)
T ss_dssp             CCCCCCCCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSS---CEEEEEEGGGCC
T ss_pred             hhcCCCCccccccceecccccHHHhhccCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCc---EEEEEecCCccc
Confidence                 1     2467888888887653 34455 446677887 9999999999999987 3  5   999999987543


Q ss_pred             cccchhhhccCCCCCCcEEEEEccCCc--cccCCCCCChHHHHHHHHHHhcCcc
Q 015368          329 VGRRVSQEFGVSGNAPRVIAYSARDAK--KYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       329 ~~~~l~~~~~i~~~~~p~i~i~~~~~~--~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                          ..+ +++..  .|.++++..+..  ...+.|..+.+.+.+||++.....+
T Consensus       424 ----~~~-~~v~~--~Pt~~~~~~G~~~~~~~~~G~~~~~~l~~~i~~~~~~~~  470 (504)
T 2b5e_A          424 ----VRG-VVIEG--YPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDV  470 (504)
T ss_dssp             ----CSS-CCCSS--SSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTCC
T ss_pred             ----ccc-CCcee--cCeEEEEeCCceecceEecCCCCHHHHHHHHHhcCCCCC
Confidence                334 78843  688888854333  5678899999999999999877665

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.65  E-value=5.5e-16  Score=126.06  Aligned_cols=104  Identities=14%  Similarity=0.245  Sum_probs=87.2

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC------------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA------------------------  113 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~------------------------  113 (408)
                      +..++++.++..-.+ ++++|.||++||++|+.+.|.+.++++++  ++.++.|++                        
T Consensus        16 l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~   92 (154)
T 3ia1_A           16 LLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET--GVPFYVISREPRDTREVVLEYMKTYPRFIPLLA   92 (154)
T ss_dssp             EECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH--CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBC
T ss_pred             EECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc--CCeEEEEeCCCcccHHHHHHHHHHcCCCccccc
Confidence            334444443322234 89999999999999999999999999999  799999999                        


Q ss_pred             ---cccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhCCCc
Q 015368          114 ---YLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       114 ---~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~~~~  164 (408)
                         +....+++.|++.++|++++++ +|+++.++.|..+.+++.++|++.....-
T Consensus        93 d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~  147 (154)
T 3ia1_A           93 SDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLE  147 (154)
T ss_dssp             CSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC-
T ss_pred             ccccchHHHHHHhCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCccc
Confidence               3667899999999999999997 99999999999999999999999886543

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.64  E-value=7e-16  Score=125.26  Aligned_cols=104  Identities=17%  Similarity=0.217  Sum_probs=87.1

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeC-----------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDA-----------------------  113 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~-----------------------  113 (408)
                      +..++++.+.....++++++|.||++||++|+.+.|.+.++++++++ ++.++.|+.                       
T Consensus        13 l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~   92 (153)
T 2l5o_A           13 LPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMY   92 (153)
T ss_dssp             EECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEE
T ss_pred             eecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEc
Confidence            34445544443333789999999999999999999999999999987 688887764                       


Q ss_pred             cccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          114 YLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       114 ~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      +.+..+++.|+|.++|++++++ +|+++.++.|..+.+.+.++|++.+.
T Consensus        93 d~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  141 (153)
T 2l5o_A           93 DADKAVGQAFGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWR  141 (153)
T ss_dssp             CSSCHHHHHHTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHcCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999996 89888999999999999999998874

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.64  E-value=5.6e-16  Score=124.20  Aligned_cols=98  Identities=13%  Similarity=0.122  Sum_probs=78.2

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHH---HHHHhcC-CcEEEEEeCcccHh---------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAA---AAKMLKG-EADLVMVDAYLEKD---------------  118 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~---~~~~~~~-~v~~~~v~~~~~~~---------------  118 (408)
                      +...+++.+...-..+++++|+|||+||++|+.++|.+.+   +++++++ ++.++.|+.+.+.+               
T Consensus        16 l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~   95 (142)
T 3eur_A           16 YTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTN   95 (142)
T ss_dssp             EEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEE
T ss_pred             EEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhccccccc
Confidence            4444554443222357999999999999999999999999   9999976 89999999987643               


Q ss_pred             ---------HHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHh
Q 015368          119 ---------LAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       119 ---------~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                               +++.|+|.++|++++++ +|+++.+..|   .+++.++|++
T Consensus        96 ~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~---~~~l~~~l~e  142 (142)
T 3eur_A           96 GYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKDAT---LQKVEQYLAE  142 (142)
T ss_dssp             EECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEEEC---HHHHHHHHHC
T ss_pred             ccCccchhhhhhhcCCCcCCeEEEECCCCcEEecCCC---HHHHHHHHhC
Confidence                     46789999999999998 8988777654   6888888753

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.63  E-value=1e-15  Score=121.53  Aligned_cols=89  Identities=22%  Similarity=0.291  Sum_probs=79.5

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC----------------------------cccHhHHHH
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA----------------------------YLEKDLAKE  122 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~----------------------------~~~~~~~~~  122 (408)
                      .++++++|.||++||++|+.+.|.+.++++++++++.++.|++                            +.+..++++
T Consensus        20 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   99 (138)
T 4evm_A           20 YKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLET   99 (138)
T ss_dssp             GTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHH
T ss_pred             hCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHH
Confidence            3689999999999999999999999999999877899999953                            335578999


Q ss_pred             cCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          123 YNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       123 ~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                      |++.++|++++++ +|+++.++.|..+.+++.++|++.
T Consensus       100 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A          100 YGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             TTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             cCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            9999999999996 999999999999999999998753

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.63  E-value=1.9e-15  Score=122.49  Aligned_cols=93  Identities=18%  Similarity=0.291  Sum_probs=81.5

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccH----------------------hHHHHcCCCc
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEK----------------------DLAKEYNILA  127 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~----------------------~~~~~~~i~~  127 (408)
                      .++++++|.||++||++|+.+.|.+.++++++++ ++.++.|+++.+.                      .+++.|++.+
T Consensus        26 ~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  105 (152)
T 3gl3_A           26 KTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKG  105 (152)
T ss_dssp             GTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCS
T ss_pred             hCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCC
Confidence            3689999999999999999999999999999987 5999999998665                      6788999999


Q ss_pred             CcEEEEEe-CCeEeEEeeCCC--CHHHHHHHHHhHhCCC
Q 015368          128 YPTLYLFV-AGVRQFQFFGER--TRDVISAWVREKMTLG  163 (408)
Q Consensus       128 ~Pt~~~~~-~g~~~~~~~g~~--~~~~l~~~i~~~~~~~  163 (408)
                      +|++++++ +|+++.++.|..  +.+.+.++|++.+...
T Consensus       106 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~  144 (152)
T 3gl3_A          106 MPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGN  144 (152)
T ss_dssp             SSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred             CCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence            99999996 999989999864  5589999999887543

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.63  E-value=1.6e-15  Score=123.07  Aligned_cols=101  Identities=12%  Similarity=0.030  Sum_probs=82.1

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHh-----------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKD-----------------  118 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~-----------------  118 (408)
                      .+.+++++.++..-..+++++|.||++||++|+.++|.+.++++++++ ++.++.|+++...+                 
T Consensus        19 ~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~   98 (152)
T 2lrt_A           19 QLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDA   98 (152)
T ss_dssp             CEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECS
T ss_pred             EEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECC
Confidence            344444444432223578999999999999999999999999999987 69999999987654                 


Q ss_pred             ------HHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHH
Q 015368          119 ------LAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       119 ------~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~  157 (408)
                            +++.|++.++|++++++ +|+++.++.|..+.++...-+.
T Consensus        99 ~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~e~~~~~~~  144 (152)
T 2lrt_A           99 NGAYSSYISLYNVTNLPSVFLVNRNNELSARGENIKDLDEAIKKLL  144 (152)
T ss_dssp             SGGGCHHHHHHTCCSCSEEEEEETTTEEEEETTTCSCHHHHHHHHH
T ss_pred             CCcchHHHHHcCcccCceEEEECCCCeEEEecCCHHHHHHHHHHHH
Confidence                  88999999999999997 9999999999988777654443

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.63  E-value=9.3e-16  Score=124.42  Aligned_cols=87  Identities=22%  Similarity=0.320  Sum_probs=76.4

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------------cHhHHHHcCC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYNI  125 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~i  125 (408)
                      ++++++|.||++||++|+.+.|.+.++++++++ ++.++.|+++.                         +..+++.|+|
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            679999999999999999999999999999987 69999999987                         5789999999


Q ss_pred             CcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          126 LAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       126 ~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      .++|++++++ +|+++.++.   +.+++.++|++.+.
T Consensus       108 ~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~l~~  141 (152)
T 2lrn_A          108 VGFPHIILVDPEGKIVAKEL---RGDDLYNTVEKFVN  141 (152)
T ss_dssp             CSSCEEEEECTTSEEEEECC---CTTHHHHHHHHHHT
T ss_pred             CcCCeEEEECCCCeEEEeeC---CHHHHHHHHHHHHh
Confidence            9999999996 998877763   44678888877663

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.62  E-value=9.2e-16  Score=123.69  Aligned_cols=86  Identities=22%  Similarity=0.403  Sum_probs=76.7

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHh-cC-CcEEEEEeCccc-------------------------HhHHHHcC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKML-KG-EADLVMVDAYLE-------------------------KDLAKEYN  124 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~-~~-~v~~~~v~~~~~-------------------------~~~~~~~~  124 (408)
                      ++++++|.||++||++|+.+.|.+.++++++ ++ ++.++.|+++..                         ..+++.|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            6899999999999999999999999999999 66 599999998873                         47899999


Q ss_pred             CCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          125 ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       125 i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +.++|++++++ +|+++.++.   +.+.+.++|++.+
T Consensus       112 v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll  145 (148)
T 3fkf_A          112 ILTLPTNILLSPTGKILARDI---QGEALTGKLKELL  145 (148)
T ss_dssp             CCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC
T ss_pred             CCCcCEEEEECCCCeEEEecC---CHHHHHHHHHHHH
Confidence            99999999996 897777665   8889999998765

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.62  E-value=1.3e-15  Score=108.09  Aligned_cols=74  Identities=22%  Similarity=0.286  Sum_probs=66.4

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCC-CHHHHHH
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGER-TRDVISA  154 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~-~~~~l~~  154 (408)
                      ..|.|||+||++|+.+.|.++++++.+++++.++.||   +.+++++|+|.++||+++  +|+.+.+  |.. +.+++.+
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~~~--G~~~~~~~l~~   74 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELKIM--GRVASKEEIKK   74 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEEEC--SSCCCHHHHHH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEEEc--CCCCCHHHHHH
Confidence            4689999999999999999999999998889999998   788999999999999988  8966555  887 8999888


Q ss_pred             HH
Q 015368          155 WV  156 (408)
Q Consensus       155 ~i  156 (408)
                      ++
T Consensus        75 ~l   76 (77)
T 1ilo_A           75 IL   76 (77)
T ss_dssp             HC
T ss_pred             Hh
Confidence            75

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.62  E-value=8.9e-16  Score=125.58  Aligned_cols=96  Identities=13%  Similarity=0.088  Sum_probs=76.0

Q ss_pred             EcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcC---CCcCcEEEEEe
Q 015368           60 SLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYN---ILAYPTLYLFV  135 (408)
Q Consensus        60 ~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~---i~~~Pt~~~~~  135 (408)
                      .+++..+..+. .++++++|+|||+||+||+.+.|.++++++.++ ++.|..||.+++++++++|+   +.++||+++++
T Consensus        40 ~~~~~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-~v~~~~v~~d~~~~~~~~~~~~~v~~iPt~i~~~  118 (167)
T 1z6n_A           40 GLPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVLD  118 (167)
T ss_dssp             CCCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEEC
T ss_pred             CCCHHHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-CcEEEEEECCCCHHHHHHHHHcCCCCcCeEEEEC
Confidence            35555555443 357899999999999999999999999999876 79999999999999999997   99999999999


Q ss_pred             C-CeEeEEeeCCCCHHHHHHHHHh
Q 015368          136 A-GVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       136 ~-g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                      + |+++.++ |.... .+.+.+.+
T Consensus       119 ~~G~~~~~~-g~~p~-~~~~~i~~  140 (167)
T 1z6n_A          119 EEFNLLGRF-VERPQ-AVLDGGPQ  140 (167)
T ss_dssp             TTCCEEEEE-ESSCH-HHHHHCHH
T ss_pred             CCCCEEEEE-cCCCH-HHHHhHHH
Confidence            5 5776666 55443 33344443

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.62  E-value=1.7e-15  Score=126.91  Aligned_cols=103  Identities=15%  Similarity=0.186  Sum_probs=85.4

Q ss_pred             cEEc--ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-Cc------EEEEEeCcc-cHhHHHHc----
Q 015368           58 VVSL--NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EA------DLVMVDAYL-EKDLAKEY----  123 (408)
Q Consensus        58 ~~~l--~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v------~~~~v~~~~-~~~~~~~~----  123 (408)
                      +..+  +++.+...-.++++++|.||++||++|+.++|.+.++++++++ ++      .|+.|+++. +++.+++|    
T Consensus        42 l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~  121 (183)
T 3lwa_A           42 GDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDN  121 (183)
T ss_dssp             EEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHT
T ss_pred             ccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHc
Confidence            4445  5554443334689999999999999999999999999999976 48      999999998 66666655    


Q ss_pred             ---------------------CCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          124 ---------------------NILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       124 ---------------------~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                           ++.++|++++++ +|+++.++.|..+.++|.++|++.+
T Consensus       122 ~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  180 (183)
T 3lwa_A          122 GLDYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV  180 (183)
T ss_dssp             TCCSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             CCCccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence                                 689999999997 8999999999999999999998875

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.62  E-value=7.2e-16  Score=123.52  Aligned_cols=98  Identities=18%  Similarity=0.290  Sum_probs=77.0

Q ss_pred             EcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHH---HHHHhcC-CcEEEEEeCcccHhH----------------
Q 015368           60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAA---AAKMLKG-EADLVMVDAYLEKDL----------------  119 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~---~~~~~~~-~v~~~~v~~~~~~~~----------------  119 (408)
                      .++++.+...-.++++++|+||++||++|+.++|.+.+   +++.+++ ++.++.|+++.+.+.                
T Consensus        14 ~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~   93 (142)
T 3ewl_A           14 TVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGW   93 (142)
T ss_dssp             CTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEE
T ss_pred             CCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceee
Confidence            34444433222368999999999999999999999998   8888865 799999999876543                


Q ss_pred             --------HHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          120 --------AKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       120 --------~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                              ++.|+|.++|++++++ +|+++.   +..+.+++.++|++..
T Consensus        94 d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A           94 NKAGDIRTRQLYDIRATPTIYLLDGRKRVIL---KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             CTTCHHHHTTCSCCCSSSEEEEECTTCBEEE---CSCCHHHHHHHHHC--
T ss_pred             CCccchhhHHHcCCCCCCeEEEECCCCCEEe---cCCCHHHHHHHHHHHc
Confidence                    3389999999999997 886654   5678999999998654

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.62  E-value=1.1e-15  Score=126.12  Aligned_cols=109  Identities=14%  Similarity=0.244  Sum_probs=86.8

Q ss_pred             CCCCCCCccCCCcEEc--ChhhHHHH-HcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC---------
Q 015368           46 NNHTWPLLYAKDVVSL--NGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA---------  113 (408)
Q Consensus        46 ~~~~~~~~~~~~~~~l--~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~---------  113 (408)
                      .|...|..   .+..+  +++.+... +.++++++|+||++||++|+.+.|.+++++++   ++.++.|++         
T Consensus        24 ~G~~~P~f---~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~v~~~~~~~~~~~   97 (168)
T 2b1k_A           24 IGKPVPKF---RLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAIS   97 (168)
T ss_dssp             TTSBCCCC---EEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHH
T ss_pred             cCCcCCCe---EeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC---CCEEEEEECCCChHHHHH
Confidence            34444443   44455  55555432 35789999999999999999999999999886   588888873         


Q ss_pred             --------------cccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          114 --------------YLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       114 --------------~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                    +.+..++++|+|.++|++++++ +|+++.++.|..+.+.+.++|++.+
T Consensus        98 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  159 (168)
T 2b1k_A           98 WLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  159 (168)
T ss_dssp             HHHHHCCCCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHH
T ss_pred             HHHHcCCCCceeeECcchHHHHHcCccccCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence                          4566789999999999888887 9988899999999999999888765

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.62  E-value=1.9e-15  Score=123.50  Aligned_cols=105  Identities=16%  Similarity=0.315  Sum_probs=85.6

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------cH
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------EK  117 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------~~  117 (408)
                      +..++++.+.....++++++|.||++||++|+.+.|.+.++++++++ ++.++.|+++.                   +.
T Consensus        26 l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~  105 (158)
T 3hdc_A           26 LPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATG  105 (158)
T ss_dssp             EECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTS
T ss_pred             eEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchH
Confidence            44455554443334689999999999999999999999999999985 89999999987                   67


Q ss_pred             hHHHHcCCCcCcEEEEEe-CCeEeEEeeCCC--CHHHHHHHHHhHhCC
Q 015368          118 DLAKEYNILAYPTLYLFV-AGVRQFQFFGER--TRDVISAWVREKMTL  162 (408)
Q Consensus       118 ~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~--~~~~l~~~i~~~~~~  162 (408)
                      ++++.|++.++|++++++ +|+++.++.|..  +.+++.+.+.+..++
T Consensus       106 ~~~~~~~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~  153 (158)
T 3hdc_A          106 QVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGH  153 (158)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC--
T ss_pred             HHHHHhCCCCcceEEEEcCCCCEEEEEeCCCccchHHHHHHHHhhccc
Confidence            899999999999999997 999999999974  557777777665543

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.61  E-value=7.9e-16  Score=125.87  Aligned_cols=83  Identities=18%  Similarity=0.274  Sum_probs=72.1

Q ss_pred             EcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHH-H--HHHHHHhcCCcEEEEEeCcccHhHHHHc--------CCCcC
Q 015368           60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPE-F--AAAAKMLKGEADLVMVDAYLEKDLAKEY--------NILAY  128 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~i~~~  128 (408)
                      ...++.|+....++|+++|+|||+||++|+.+.|+ |  .++++.+++++.++.||.++.+++++.|        |+.++
T Consensus        26 ~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~  105 (173)
T 3ira_A           26 PWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGW  105 (173)
T ss_dssp             CSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCS
T ss_pred             CcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCC
Confidence            34567888888899999999999999999999994 3  5677777668999999999999999988        99999


Q ss_pred             cEEEEEe-CCeEeEE
Q 015368          129 PTLYLFV-AGVRQFQ  142 (408)
Q Consensus       129 Pt~~~~~-~g~~~~~  142 (408)
                      |++++++ +|+.+..
T Consensus       106 Pt~v~l~~dG~~v~~  120 (173)
T 3ira_A          106 PLNIIMTPGKKPFFA  120 (173)
T ss_dssp             SEEEEECTTSCEEEE
T ss_pred             cceeeECCCCCceee
Confidence            9999998 8976654

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.61  E-value=1.7e-15  Score=123.34  Aligned_cols=95  Identities=18%  Similarity=0.283  Sum_probs=80.3

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-----------------------ccHhHH
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-----------------------LEKDLA  120 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-----------------------~~~~~~  120 (408)
                      +.++.....+++++|.||++||++|+.+.|.+.+++++  +++.++.|+++                       .+..++
T Consensus        33 ~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  110 (156)
T 1kng_A           33 PGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD--KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRAS  110 (156)
T ss_dssp             CCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC--TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHH
T ss_pred             ceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc--CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHH
Confidence            44543334689999999999999999999999999877  46888888864                       345788


Q ss_pred             HHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          121 KEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       121 ~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +.|++.++|++++++ +|+++.++.|..+.+.+.++|++.+
T Consensus       111 ~~~~v~~~P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~~l  151 (156)
T 1kng_A          111 IEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  151 (156)
T ss_dssp             HHTTCCSSCEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             HhcCcCccCeEEEEcCCCCEEEEEeCCCCHHHHHHHHHHHH
Confidence            999999999988886 9988899999999999999988765

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.61  E-value=2.7e-15  Score=124.84  Aligned_cols=111  Identities=16%  Similarity=0.282  Sum_probs=87.6

Q ss_pred             cCCCCCCCCccCCCcEEcCh--hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC--------
Q 015368           44 LNNNHTWPLLYAKDVVSLNG--KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--------  113 (408)
Q Consensus        44 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~--------  113 (408)
                      ...|...|.+   .+..+++  ..+......+++++|+||++||++|+.++|.+.+++++   ++.++.|++        
T Consensus        30 ~~~G~~~P~f---~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~v~vv~vs~~d~~~~~~  103 (176)
T 3kh7_A           30 ALIGKPFPAF---DLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ---GVVIYGINYKDDNAAAI  103 (176)
T ss_dssp             TTTTSBCCCC---EEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCEEEEEEESCCHHHHH
T ss_pred             cccCCcCCCc---EecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC---CCEEEEEeCCCCHHHHH
Confidence            3344455543   3444444  33443334689999999999999999999999999887   588888885        


Q ss_pred             ---------------cccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          114 ---------------YLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       114 ---------------~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                     +.+..+++.|++.++|++++++ +|+++.++.|..+.+.+.++|.+.+
T Consensus       104 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l  166 (176)
T 3kh7_A          104 KWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHKIVGVVDQKVWREQLAPLY  166 (176)
T ss_dssp             HHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHH
T ss_pred             HHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence                           3445788999999999999997 9999999999999999999888765

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.60  E-value=3e-15  Score=121.62  Aligned_cols=103  Identities=20%  Similarity=0.320  Sum_probs=84.3

Q ss_pred             EEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc---------------------
Q 015368           59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------  116 (408)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~---------------------  116 (408)
                      ..++++.+...-.++++++|.||++||++|+.+.|.+.++++.+++ ++.++.|+++.+                     
T Consensus        14 ~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d   93 (154)
T 3kcm_A           14 NTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLD   93 (154)
T ss_dssp             ECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEEC
T ss_pred             EcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEec
Confidence            3344444432223689999999999999999999999999999987 899999999875                     


Q ss_pred             --HhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCC--CHHHHHHHHHhHhC
Q 015368          117 --KDLAKEYNILAYPTLYLFV-AGVRQFQFFGER--TRDVISAWVREKMT  161 (408)
Q Consensus       117 --~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~--~~~~l~~~i~~~~~  161 (408)
                        ..+++.|++.++|++++++ +|+++.++.|..  +.+++.++|++...
T Consensus        94 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~  143 (154)
T 3kcm_A           94 ADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELS  143 (154)
T ss_dssp             TTCHHHHHHTCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC--
T ss_pred             CchHHHHHhCCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHH
Confidence              3488999999999999997 999989999985  66799999987653

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.60  E-value=1.2e-15  Score=122.37  Aligned_cols=95  Identities=12%  Similarity=0.099  Sum_probs=69.4

Q ss_pred             hHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHH---HHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe-CCeEe
Q 015368           65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAA---KMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV-AGVRQ  140 (408)
Q Consensus        65 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~---~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~-~g~~~  140 (408)
                      .+..+..++++++|+|||+||++|+.+.|.+.+..   +..+.++..+.|| ++..+++.++++.++||+++++ +|+++
T Consensus        36 al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD-~e~~~~~~~~~v~~~PT~~f~~~~G~~v  114 (151)
T 3ph9_A           36 GLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLM-HETTDKNLSPDGQYVPRIMFVDPSLTVR  114 (151)
T ss_dssp             HHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEES-SCCSCGGGCTTCCCSSEEEEECTTSCBC
T ss_pred             HHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEec-CCchhhHhhcCCCCCCEEEEECCCCCEE
Confidence            34455578999999999999999999999998643   2222144444444 2445678899999999999999 99988


Q ss_pred             EEeeCC-------CCH---HHHHHHHHhHh
Q 015368          141 FQFFGE-------RTR---DVISAWVREKM  160 (408)
Q Consensus       141 ~~~~g~-------~~~---~~l~~~i~~~~  160 (408)
                      .+..|.       +..   +.+.+.+++.+
T Consensus       115 ~~~~G~~~~~~~~~~~~~~~~ll~~~~~al  144 (151)
T 3ph9_A          115 ADIAGRYSNRLYTYEPRDLPLLIENMKKAL  144 (151)
T ss_dssp             TTCCCSCTTSTTCCCGGGHHHHHHHHHHHH
T ss_pred             EEEeCCcCCcccccchhhHHHHHHHHHHHH
Confidence            888998       444   44555555443

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=6e-15  Score=119.33  Aligned_cols=100  Identities=17%  Similarity=0.290  Sum_probs=81.7

Q ss_pred             cEEcChhhHHHH--HcCCCcEEEEEecCCChh--HHhhhHHHHHHHHHh-cC-CcEEEEEeCcccH--------------
Q 015368           58 VVSLNGKNFSEF--MGKNRNVMVMFYANWCYW--SKKLAPEFAAAAKML-KG-EADLVMVDAYLEK--------------  117 (408)
Q Consensus        58 ~~~l~~~~~~~~--~~~~~~~~v~f~a~wC~~--C~~~~p~~~~~~~~~-~~-~v~~~~v~~~~~~--------------  117 (408)
                      +..++++.+...  -.++++++|+||++||++  |+.++|.+.++++++ ++ ++.++.|+++..+              
T Consensus        16 l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~   95 (150)
T 3fw2_A           16 LPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDW   95 (150)
T ss_dssp             EEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCS
T ss_pred             eECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCc
Confidence            444444444322  236799999999999999  999999999999999 66 6999999998764              


Q ss_pred             -----------hHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          118 -----------DLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       118 -----------~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                 .+++.|++.++|++++++ +|+++.++.   +.+++.+.|++.+
T Consensus        96 ~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll  147 (150)
T 3fw2_A           96 EQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL---RGEELKKKIENIV  147 (150)
T ss_dssp             EEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC---CHHHHHHHHHHHH
T ss_pred             eEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEccC---CHHHHHHHHHHHH
Confidence                       789999999999999997 998777764   7888888887654

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.58  E-value=5.2e-15  Score=121.76  Aligned_cols=100  Identities=13%  Similarity=0.254  Sum_probs=82.6

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc------------------ccH--
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY------------------LEK--  117 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~------------------~~~--  117 (408)
                      +..++++.+...-.++++++|.||++||++|+.++|.+.+++++++ ++.|+.|+++                  +..  
T Consensus        22 l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~  100 (165)
T 3ha9_A           22 LTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEM  100 (165)
T ss_dssp             EEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHH
T ss_pred             eecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHH
Confidence            3344444443222367999999999999999999999999999998 8999999998                  442  


Q ss_pred             --------------------hHHHHcCCCcCcEEEEEe-CCeEeEEeeCCC-CHHHHHHHHHhHh
Q 015368          118 --------------------DLAKEYNILAYPTLYLFV-AGVRQFQFFGER-TRDVISAWVREKM  160 (408)
Q Consensus       118 --------------------~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~-~~~~l~~~i~~~~  160 (408)
                                          ++++.|+|.++|++++++ +|+++.  .|.. +.+.+.+.|++.+
T Consensus       101 ~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          101 FRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTTPSLGELESVIKSVQ  163 (165)
T ss_dssp             HHHHHHHHSCTTSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEESCCHHHHHHHHHHC-
T ss_pred             HHHHHHHcCCCCeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCCCCHHHHHHHHHHHh
Confidence                                789999999999999997 886655  8888 9999999998765

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.56  E-value=1.3e-14  Score=132.86  Aligned_cols=101  Identities=19%  Similarity=0.236  Sum_probs=86.3

Q ss_pred             EcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-----------------------
Q 015368           60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-----------------------  115 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-----------------------  115 (408)
                      ..+++.+...-.++|+++|+||++||++|+.++|.+.++++++++ ++.++.|++++                       
T Consensus        69 d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv  148 (352)
T 2hyx_A           69 TPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPI  148 (352)
T ss_dssp             SGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCE
T ss_pred             CCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccE
Confidence            344444443334689999999999999999999999999999987 79999998753                       


Q ss_pred             ----cHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          116 ----EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       116 ----~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                          +..+++.|+|.++|++++++ +|+++.++.|..+.+.+.++|++.+
T Consensus       149 ~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL  198 (352)
T 2hyx_A          149 ALDNNYATWTNYRNRYWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLL  198 (352)
T ss_dssp             EECTTSHHHHHTTCCEESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHH
T ss_pred             EeCCcHHHHHHcCCCccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence                35789999999999999997 9999999999999999999998876

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.56  E-value=1.8e-14  Score=121.00  Aligned_cols=106  Identities=20%  Similarity=0.273  Sum_probs=84.7

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc-----HhHHHHcCCC-----
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-----KDLAKEYNIL-----  126 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~-----~~~~~~~~i~-----  126 (408)
                      +.+++++.++..-.++++++|+||++||++|+.++|.+.++++++++ ++.++.|+++..     ..+++++++.     
T Consensus        45 l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~  124 (186)
T 1jfu_A           45 FEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYF  124 (186)
T ss_dssp             EECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCE
T ss_pred             eEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceE
Confidence            33444444432223689999999999999999999999999999974 899999999865     4567777774     


Q ss_pred             ------------------cCcEEEEEe-CCeEeEEeeCCCC--HHHHHHHHHhHhCCC
Q 015368          127 ------------------AYPTLYLFV-AGVRQFQFFGERT--RDVISAWVREKMTLG  163 (408)
Q Consensus       127 ------------------~~Pt~~~~~-~g~~~~~~~g~~~--~~~l~~~i~~~~~~~  163 (408)
                                        ++|++++++ +|+++.++.|..+  .+++.++|++.+..+
T Consensus       125 ~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~~  182 (186)
T 1jfu_A          125 NDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGKA  182 (186)
T ss_dssp             ECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC--
T ss_pred             ECCcchHHHHhccccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhccc
Confidence                              899999997 9999899999865  789999999887543

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.56  E-value=7.2e-15  Score=117.82  Aligned_cols=84  Identities=14%  Similarity=0.171  Sum_probs=71.4

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccH--------------------------hHHHHc
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEK--------------------------DLAKEY  123 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~--------------------------~~~~~~  123 (408)
                      .++++++|+|||+||++|+.++|.+.++++++++ ++.++.|+++.+.                          .+++.|
T Consensus        30 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  109 (143)
T 4fo5_A           30 QLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKY  109 (143)
T ss_dssp             SSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHT
T ss_pred             hCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHc
Confidence            3679999999999999999999999999999986 7999999988532                          577899


Q ss_pred             CCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHH
Q 015368          124 NILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       124 ~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~  157 (408)
                      +|.++|++++++ +|+++.+..   ..+++.+.++
T Consensus       110 ~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~l~  141 (143)
T 4fo5_A          110 DLRKGFKNFLINDEGVIIAANV---TPEKLTEILK  141 (143)
T ss_dssp             TGGGCCCEEEECTTSBEEEESC---CHHHHHHHHT
T ss_pred             CCCCCCcEEEECCCCEEEEccC---CHHHHHHHHH
Confidence            999999999998 998777654   4677777664

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.56  E-value=1.2e-13  Score=127.95  Aligned_cols=198  Identities=15%  Similarity=0.190  Sum_probs=153.7

Q ss_pred             cccccChhHHHHHhccCCeEEEEEecCCCCc--CHHH-------HHHHh-ccCC-ceeEEEe---cCHhHHhhcCCCCCC
Q 015368          164 TYSITTTDEAERILTVESKLVLGFLHDLEGM--ESEE-------LAAAS-KLHS-DVNFYQT---TSADVAEFFHIHPKS  229 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~--~~~~-------~~~~a-~~~~-~~~f~~~---~~~~l~~~~~i~~~~  229 (408)
                      +..+ +.++++..+..++.++|.|+++||+.  ..+.       +..++ .+.+ .+.|+.+   .+.++++++++.   
T Consensus        13 v~~l-~~~~f~~~i~~~~~~lV~F~a~wC~c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~---   88 (350)
T 1sji_A           13 VVSL-TEKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFD---   88 (350)
T ss_dssp             CEEE-CHHHHHHHHTTCSEEEEEEECCSCSSSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCC---
T ss_pred             cEEC-CHHHHHHHHhhCCeEEEEEECCCCcchhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCC---
Confidence            4555 66889999988899999999999972  2233       66666 4544 5888876   567899999999   


Q ss_pred             CCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeec-ccccccccc-CCccEEEEEeeCCCchHHHHHHHHHH
Q 015368          230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLT-IHNAQFVFQ-DPRKQLWLFAPAYGSDKVILTFEEVA  307 (408)
Q Consensus       230 ~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt-~~~~~~~~~-~~~~~~i~f~~~~~~~~~~~~~~~vA  307 (408)
                      ++|++++|+.+  ....|.|.++.+.|.+|+....-|.+.+++ .+++..+.. ...+.++.|.... +......|.++|
T Consensus        89 ~~Pt~~~~~~g--~~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~-~~~~~~~~~~~A  165 (350)
T 1sji_A           89 EEGSLYVLKGD--RTIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSE-ESEYYKAFEEAA  165 (350)
T ss_dssp             STTEEEEEETT--EEEEECSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCT-TSHHHHHHHHHH
T ss_pred             ccceEEEEECC--cEEEecCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCC-CcHHHHHHHHHH
Confidence            69999999765  367899999999999999999999999985 566777665 4445555555443 345568899999


Q ss_pred             HHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCccccCCCC-CChHHHHHHHHHHhcCcc
Q 015368          308 KALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLNGE-LTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       308 ~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~y~~~~~-~~~~~i~~Fi~~~~~gk~  380 (408)
                      ..++++   +.|+.+.      .+.+++.+|++   .|.++++.. +.....|+|. .+.+.|.+|+++..-+.+
T Consensus       166 ~~~~~~---~~f~~~~------~~~~~~~~~v~---~p~i~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v  228 (350)
T 1sji_A          166 EHFQPY---IKFFATF------DKGVAKKLSLK---MNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTL  228 (350)
T ss_dssp             HHTTTT---SEEEEEC------CHHHHHHHTCC---TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHHCCCSE
T ss_pred             HhhccC---cEEEEEC------CHHHHHHcCCC---CCcEEEEeCCCCCceecCCCCCCHHHHHHHHHHcCccch
Confidence            999988   9999986      23678899996   578888876 4455567886 899999999999877666

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.55  E-value=4.9e-13  Score=120.46  Aligned_cols=204  Identities=11%  Similarity=0.155  Sum_probs=151.4

Q ss_pred             CCcccccChhHHHHHhc-cCCeEEEEEecCCCCcCH---HHHHHHh-ccCCceeEEEe-----cCHhHHhhcCCCCCCCC
Q 015368          162 LGTYSITTTDEAERILT-VESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT-----TSADVAEFFHIHPKSKR  231 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~-----~~~~l~~~~~i~~~~~~  231 (408)
                      ..+..+ +.++++..+. .+.+++|.|+++||.++.   +.+..++ .+.+.+.++.+     .+..++++|++.   ++
T Consensus        17 ~~vv~l-t~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~---~~   92 (298)
T 3ed3_A           17 PHISEL-TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVN---GF   92 (298)
T ss_dssp             TTCEEC-CHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCC---BS
T ss_pred             CCeEEe-CHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCC---cc
Confidence            345566 6788988884 567899999999999854   4566666 56666777665     356899999999   59


Q ss_pred             CeEEEeecCC----------------CcccccCCcCCHHHHHHHHhcCCCCceEeec-cccccccccCC-ccEEEEEeeC
Q 015368          232 PALIFLHLEA----------------GKATPFRHQFTRLAIANFVTHTKHPLVVTLT-IHNAQFVFQDP-RKQLWLFAPA  293 (408)
Q Consensus       232 p~l~~~~~~~----------------~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt-~~~~~~~~~~~-~~~~i~f~~~  293 (408)
                      |++++|+.+.                .....|.|.++.+.|.+|+....-|.+..++ .+++..+.... .+.+++|...
T Consensus        93 Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~fs~~  172 (298)
T 3ed3_A           93 PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQ  172 (298)
T ss_dssp             SEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEEEESS
T ss_pred             ceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEEEcCC
Confidence            9999999764                1367899999999999999999989888885 45677766653 4777777544


Q ss_pred             CCchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchh--hhcc-----C-----------CCCCCcEEEEEcc-CC
Q 015368          294 YGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVS--QEFG-----V-----------SGNAPRVIAYSAR-DA  354 (408)
Q Consensus       294 ~~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~--~~~~-----i-----------~~~~~p~i~i~~~-~~  354 (408)
                      .   .....|+.+|.+++++   +.|+.++..+.   ..+.  +.|+     +           .....|.+++++. .+
T Consensus       173 ~---~~~~~f~~~A~~~~~~---~~F~~v~~~~~---a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~  243 (298)
T 3ed3_A          173 D---KISPVYKSIALDWLGK---FDFYSISNKKL---KQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKD  243 (298)
T ss_dssp             S---SCCHHHHHHHHHTBTT---EEEEEEEGGGC---CCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTT
T ss_pred             C---cchHHHHHHHHHhhcC---cEEEEEcchHh---hhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCC
Confidence            3   2336789999999999   99999985432   1111  2233     2           1145799999987 66


Q ss_pred             ccccCCC-CCChHHHHHHHHHHhcC
Q 015368          355 KKYVLNG-ELTLSSIKSFGEEFLED  378 (408)
Q Consensus       355 ~~y~~~~-~~~~~~i~~Fi~~~~~g  378 (408)
                      +.+.|.| .++.++|.+||.+-.+.
T Consensus       244 ~~~~y~g~~~~~~~i~~fi~~~~~~  268 (298)
T 3ed3_A          244 KFWEYEGNSINKNDISKFLRDTFSI  268 (298)
T ss_dssp             EEEECCCSSCCHHHHHHHHHHHHTC
T ss_pred             ceEEeccccCCHHHHHHHHHhhcCC
Confidence            7777885 79999999999975543

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.54  E-value=1.5e-14  Score=122.55  Aligned_cols=103  Identities=18%  Similarity=0.224  Sum_probs=84.3

Q ss_pred             EcChhhHHHHHcCCC-cEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc-----------------------
Q 015368           60 SLNGKNFSEFMGKNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY-----------------------  114 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~-~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~-----------------------  114 (408)
                      .++++.++..-..++ +++|+||++||++|+.++|.+.++++++++ ++.++.|+++                       
T Consensus        32 ~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~  111 (196)
T 2ywi_A           32 VIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYP  111 (196)
T ss_dssp             TTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCC
T ss_pred             cCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCC
Confidence            344544442223566 599999999999999999999999999987 6999999984                       


Q ss_pred             ------ccHhHHHHcCCCcCcEEEEEe-CCeEeEE---------eeCCCCHHHHHHHHHhHhCC
Q 015368          115 ------LEKDLAKEYNILAYPTLYLFV-AGVRQFQ---------FFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       115 ------~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~---------~~g~~~~~~l~~~i~~~~~~  162 (408)
                            .+.++++.|++.++|++++++ +|+++.+         +.|..+.+++.+.|++.+..
T Consensus       112 ~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~  175 (196)
T 2ywi_A          112 FPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEG  175 (196)
T ss_dssp             SCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHT
T ss_pred             ceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcC
Confidence                  355789999999999999997 8988777         45778899999999888743

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.54  E-value=1.5e-13  Score=127.84  Aligned_cols=199  Identities=13%  Similarity=0.140  Sum_probs=154.4

Q ss_pred             CcccccChhHHHHHhccCCeEEEEEecCCCCcC--HH-------HHHHHh-ccCC-ceeEEEe---cCHhHHhhcCCCCC
Q 015368          163 GTYSITTTDEAERILTVESKLVLGFLHDLEGME--SE-------ELAAAS-KLHS-DVNFYQT---TSADVAEFFHIHPK  228 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~--~~-------~~~~~a-~~~~-~~~f~~~---~~~~l~~~~~i~~~  228 (408)
                      .+..+ +.++++..+..++.++|.|+++||++.  .+       .+..++ .+.+ .+.|+.+   .+.+++++++|.  
T Consensus        14 ~v~~l-t~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~--   90 (367)
T 3us3_A           14 RVINV-NAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT--   90 (367)
T ss_dssp             CCEEC-CTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCC--
T ss_pred             ccEEC-CHHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCC--
Confidence            35555 567888899889999999999999883  22       455666 4444 5888876   567899999999  


Q ss_pred             CCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeec-ccccccccc-CCccEEEEEeeCCCchHHHHHHHHH
Q 015368          229 SKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLT-IHNAQFVFQ-DPRKQLWLFAPAYGSDKVILTFEEV  306 (408)
Q Consensus       229 ~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt-~~~~~~~~~-~~~~~~i~f~~~~~~~~~~~~~~~v  306 (408)
                       ++|++++|+.+  ....|.|.++.+.|.+|+.+...|.+..++ .+++..+.. ...+.++.|.... +......|.++
T Consensus        91 -~~PTl~~f~~G--~~~~y~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~-~~~~~~~f~~~  166 (367)
T 3us3_A           91 -EEDSIYVFKED--EVIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNK-DSEHYKAFKEA  166 (367)
T ss_dssp             -STTEEEEEETT--EEEECCSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSCT-TCHHHHHHHHH
T ss_pred             -cCceEEEEECC--cEEEeCCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECCC-CchHHHHHHHH
Confidence             69999999965  567999999999999999999999998886 467777766 3445555555432 34667789999


Q ss_pred             HHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCccccCCC-CCChHHHHHHHHHHhcCcc
Q 015368          307 AKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKKYVLNG-ELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       307 A~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~y~~~~-~~~~~~i~~Fi~~~~~gk~  380 (408)
                      |..++++   +.|+.+..      ..+++.+|++   .|.++++.. ......|.| ..+.+.|.+||+...-.-+
T Consensus       167 A~~~~~~---~~F~~~~~------~~~~~~~~v~---~p~i~lf~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v  230 (367)
T 3us3_A          167 AEEFHPY---IPFFATFD------SKVAKKLTLK---LNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTL  230 (367)
T ss_dssp             HHHHTTT---SCEEEECC------HHHHHHHTCC---TTCEEEECTTCSSCEECSSSSCCHHHHHHHHHHTCSCSE
T ss_pred             HHhhcCC---cEEEEECC------HHHHHHcCCC---CCeEEEEcCCCCCCeecCCCCCCHHHHHHHHHHcCccce
Confidence            9999998   99999862      3677899996   377888776 455566788 5899999999998876655

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.53  E-value=1.8e-14  Score=121.24  Aligned_cols=103  Identities=19%  Similarity=0.272  Sum_probs=81.8

Q ss_pred             EcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-------------------------
Q 015368           60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-------------------------  114 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-------------------------  114 (408)
                      .++++.+...-..+++++|.||++||++|+.++|.+.++++++++++.++.|+++                         
T Consensus        20 ~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~   99 (188)
T 2cvb_A           20 DPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFP   99 (188)
T ss_dssp             CTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSC
T ss_pred             cCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCce
Confidence            3444443322236799999999999999999999999999999877999999983                         


Q ss_pred             ----ccHhHHHHcCCCcCcEEEEEe-CCeEeEE--------eeCCCCHHHHHHHHHhHhCC
Q 015368          115 ----LEKDLAKEYNILAYPTLYLFV-AGVRQFQ--------FFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       115 ----~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~--------~~g~~~~~~l~~~i~~~~~~  162 (408)
                          .+.++++.|++.++|++++++ +|+++.+        +.|..+.++|.+.|++.+..
T Consensus       100 ~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~  160 (188)
T 2cvb_A          100 YLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRG  160 (188)
T ss_dssp             EEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTT
T ss_pred             EEECCcchHHHHcCCCCCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcC
Confidence                355789999999999999997 8977665        22334778999999888753

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.53  E-value=2.2e-14  Score=115.07  Aligned_cols=87  Identities=16%  Similarity=0.214  Sum_probs=71.5

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCccc------------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLE------------------  116 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~~------------------  116 (408)
                      .+..++++.++....++++++|+||++||++|+.++|.+.+++++++  .++.++.|+++..                  
T Consensus        12 ~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~   91 (144)
T 1i5g_A           12 NVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPF   91 (144)
T ss_dssp             EEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             EEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCcccccc
Confidence            34455555554333468999999999999999999999999999998  3899999998863                  


Q ss_pred             ------HhHHHHcCCCcCcEEEEEe--CCeEeEEe
Q 015368          117 ------KDLAKEYNILAYPTLYLFV--AGVRQFQF  143 (408)
Q Consensus       117 ------~~~~~~~~i~~~Pt~~~~~--~g~~~~~~  143 (408)
                            ..++++|+|.++|++++++  +|+++.++
T Consensus        92 ~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A           92 EDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             CchHHHHHHHHHcCCCCCCEEEEEECCCCcEEecc
Confidence                  5789999999999999997  88766554

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.53  E-value=2e-14  Score=118.10  Aligned_cols=85  Identities=16%  Similarity=0.230  Sum_probs=70.1

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCccc-------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLE-------------------  116 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~-------------------  116 (408)
                      +..+++ .+...-.++|+++|+|||+||++|++++|.+.++++++++  ++.++.|+++..                   
T Consensus        34 l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3s9f_A           34 LRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFA  112 (165)
T ss_dssp             EEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTT
T ss_pred             eecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccC
Confidence            344444 4432223689999999999999999999999999999985  899999998876                   


Q ss_pred             -----HhHHHHcCCCcCcEEEEEe-C-CeEeEEe
Q 015368          117 -----KDLAKEYNILAYPTLYLFV-A-GVRQFQF  143 (408)
Q Consensus       117 -----~~~~~~~~i~~~Pt~~~~~-~-g~~~~~~  143 (408)
                           ..+++.|+|.++|++++++ + |+++.+.
T Consensus       113 ~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~  146 (165)
T 3s9f_A          113 NRNIVEALTKKYSVESIPTLIGLNADTGDTVTTR  146 (165)
T ss_dssp             CHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             chhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecc
Confidence                 6789999999999999999 5 9776654

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.52  E-value=2.9e-14  Score=106.31  Aligned_cols=77  Identities=17%  Similarity=0.204  Sum_probs=70.2

Q ss_pred             cEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHH
Q 015368           75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA  154 (408)
Q Consensus        75 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~  154 (408)
                      +.++.||++||++|+.+.|.+++++++++  +.+..||++++++++.+|+++ +|+++++.+|+.+  ..|..+.+.|.+
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~-VP~l~~~~dG~~v--~~g~~~~~~L~~  104 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW--FELEVINIDGNEHLTRLYNDR-VPVLFAVNEDKEL--CHYFLDSDVIGA  104 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTS-CSEEEETTTTEEE--ECSSCCCHHHHH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCC-CceEEEEECCEEE--EecCCCHHHHHH
Confidence            67999999999999999999999999874  999999999999999999997 9999999999765  458889999988


Q ss_pred             HH
Q 015368          155 WV  156 (408)
Q Consensus       155 ~i  156 (408)
                      ||
T Consensus       105 ~L  106 (107)
T 2fgx_A          105 YL  106 (107)
T ss_dssp             HH
T ss_pred             Hh
Confidence            87

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.51  E-value=2.4e-14  Score=115.18  Aligned_cols=85  Identities=19%  Similarity=0.243  Sum_probs=69.2

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCccc-------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLE-------------------  116 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~~-------------------  116 (408)
                      +.++++ .+...-.++++++|+|||+||++|+.++|.+.+++++++  +++.++.|+++.+                   
T Consensus        14 l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~   92 (146)
T 1o8x_A           14 LRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFA   92 (146)
T ss_dssp             EEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGG
T ss_pred             EEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccc
Confidence            334444 443222468999999999999999999999999999998  3899999998863                   


Q ss_pred             -----HhHHHHcCCCcCcEEEEEe--CCeEeEEe
Q 015368          117 -----KDLAKEYNILAYPTLYLFV--AGVRQFQF  143 (408)
Q Consensus       117 -----~~~~~~~~i~~~Pt~~~~~--~g~~~~~~  143 (408)
                           ..++++|+|.++|++++++  +|+++.+.
T Consensus        93 ~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~  126 (146)
T 1o8x_A           93 QSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTR  126 (146)
T ss_dssp             GHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESC
T ss_pred             hhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEec
Confidence                 4789999999999999998  88766554

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.51  E-value=2.6e-14  Score=103.01  Aligned_cols=74  Identities=15%  Similarity=0.138  Sum_probs=65.2

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i  156 (408)
                      ++.||++||++|+.+.|.+++++.++     +..||++++++++++||++ +|++++ .+|+.+.   |..+.+.|.++|
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~-----~~~vdid~~~~l~~~~g~~-vPtl~~-~~G~~v~---g~~~~~~L~~~l   72 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA-----FFSVFIDDDAALESAYGLR-VPVLRD-PMGRELD---WPFDAPRLRAWL   72 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC-----EEEEECTTCHHHHHHHTTT-CSEEEC-TTCCEEE---SCCCHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh-----eEEEECCCCHHHHHHhCCC-cCeEEE-ECCEEEe---CCCCHHHHHHHH
Confidence            78899999999999999999876543     6899999999999999998 999998 8886653   889999999999


Q ss_pred             HhHh
Q 015368          157 REKM  160 (408)
Q Consensus       157 ~~~~  160 (408)
                      .+.+
T Consensus        73 ~~~~   76 (87)
T 1ttz_A           73 DAAP   76 (87)
T ss_dssp             HTCC
T ss_pred             HHHH
Confidence            8655

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.50  E-value=5.4e-14  Score=112.76  Aligned_cols=73  Identities=19%  Similarity=0.297  Sum_probs=64.2

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhc--CCcEEEEEeCccc------------------------HhHHHHcC
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLK--GEADLVMVDAYLE------------------------KDLAKEYN  124 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~--~~v~~~~v~~~~~------------------------~~~~~~~~  124 (408)
                      .++++++|+||++||++|+.++|.+.+++++++  .++.++.|+++.+                        ..++++|+
T Consensus        26 ~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (144)
T 1o73_A           26 LVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG  105 (144)
T ss_dssp             GTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT
T ss_pred             hCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcC
Confidence            367899999999999999999999999999998  4899999998863                        46889999


Q ss_pred             CCcCcEEEEEe--CCeEeEEe
Q 015368          125 ILAYPTLYLFV--AGVRQFQF  143 (408)
Q Consensus       125 i~~~Pt~~~~~--~g~~~~~~  143 (408)
                      |.++|++++++  +|+++.+.
T Consensus       106 v~~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A          106 VESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEESC
T ss_pred             CCCCCEEEEEECCCCeEEecc
Confidence            99999999999  88665544

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.49  E-value=9.7e-14  Score=119.49  Aligned_cols=106  Identities=18%  Similarity=0.211  Sum_probs=82.9

Q ss_pred             CcEEcChhhHHHHHcCCC-cEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc--------------------
Q 015368           57 DVVSLNGKNFSEFMGKNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY--------------------  114 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~-~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~--------------------  114 (408)
                      .+..++++.+...-..++ +++|.||++||++|+.++|.+.++++++++ ++.++.|+++                    
T Consensus        42 ~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~  121 (218)
T 3u5r_E           42 VLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAY  121 (218)
T ss_dssp             CEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHH
T ss_pred             EeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHh
Confidence            444555555543333567 499999999999999999999999999987 6999999993                    


Q ss_pred             ---------ccHhHHHHcCCCcCcEEEEEe-CCeEeEEee---------CCCCHHHHHHHHHhHhCC
Q 015368          115 ---------LEKDLAKEYNILAYPTLYLFV-AGVRQFQFF---------GERTRDVISAWVREKMTL  162 (408)
Q Consensus       115 ---------~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~---------g~~~~~~l~~~i~~~~~~  162 (408)
                               .+..+++.|++.++|++++++ +|+++.+..         |..+.++|.+.|++.+..
T Consensus       122 ~~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~  188 (218)
T 3u5r_E          122 GYGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKG  188 (218)
T ss_dssp             TCCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTT
T ss_pred             CCCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcC
Confidence                     456789999999999999997 897654321         234578888888887743

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.49  E-value=1.2e-13  Score=113.01  Aligned_cols=90  Identities=16%  Similarity=0.197  Sum_probs=74.0

Q ss_pred             cEEcChhhHHHHHcCCCc-EEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc--------------------
Q 015368           58 VVSLNGKNFSEFMGKNRN-VMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY--------------------  114 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~-~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~--------------------  114 (408)
                      +..++++.+...-..+++ ++|.|| ++||++|+.++|.+.++++++++ ++.++.|++|                    
T Consensus        13 l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~   92 (161)
T 3drn_A           13 GIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVS   92 (161)
T ss_dssp             EEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEE
T ss_pred             eecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEE
Confidence            344455444322235676 999999 99999999999999999999987 6999999987                    


Q ss_pred             -ccHhHHHHcCCCc----CcEEEEEe-CCeEeEEeeCCC
Q 015368          115 -LEKDLAKEYNILA----YPTLYLFV-AGVRQFQFFGER  147 (408)
Q Consensus       115 -~~~~~~~~~~i~~----~Pt~~~~~-~g~~~~~~~g~~  147 (408)
                       .+.++++.|++.+    +|++++++ +|+++..+.|..
T Consensus        93 d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~~~g~~  131 (161)
T 3drn_A           93 DPDKKIRELYGAKGFILPARITFVIDKKGIIRHIYNSQM  131 (161)
T ss_dssp             CTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEEEECSS
T ss_pred             CCcHHHHHHcCCCCcCcccceEEEECCCCEEEEEEecCC
Confidence             4567899999999    99999998 999999999943

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.48  E-value=8.1e-14  Score=114.36  Aligned_cols=89  Identities=15%  Similarity=0.213  Sum_probs=78.7

Q ss_pred             CCCcEEEEEecCCChh-HHhhhHHHHHHHHHhcC-----CcEEEEEeCccc----------------------------H
Q 015368           72 KNRNVMVMFYANWCYW-SKKLAPEFAAAAKMLKG-----EADLVMVDAYLE----------------------------K  117 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~-C~~~~p~~~~~~~~~~~-----~v~~~~v~~~~~----------------------------~  117 (408)
                      .+++++|+||++||++ |+.++|.+.++++++++     ++.++.|++|..                            .
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            6799999999999998 99999999999999863     899999998752                            1


Q ss_pred             hHHHHcCCCcCc---------------EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          118 DLAKEYNILAYP---------------TLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       118 ~~~~~~~i~~~P---------------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      .+++.|++.+.|               ++++++ +|+++.++.|..+.+++.+.|++.+
T Consensus       102 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll  160 (164)
T 2ggt_A          102 QVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM  160 (164)
T ss_dssp             HHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHH
T ss_pred             HHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            478899999999               888887 9999999999999999999998776

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.48  E-value=1e-13  Score=114.62  Aligned_cols=90  Identities=18%  Similarity=0.248  Sum_probs=79.2

Q ss_pred             CCCcEEEEEecCCChh-HHhhhHHHHHHHHHhc-----CCcEEEEEeCccc----------------------------H
Q 015368           72 KNRNVMVMFYANWCYW-SKKLAPEFAAAAKMLK-----GEADLVMVDAYLE----------------------------K  117 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~-C~~~~p~~~~~~~~~~-----~~v~~~~v~~~~~----------------------------~  117 (408)
                      .+++++|+||++||++ |+.++|.+.+++++++     .++.++.|+++.+                            .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            5799999999999998 9999999999999995     4899999998731                            2


Q ss_pred             hHHHHcCCCcCc---------------EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          118 DLAKEYNILAYP---------------TLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       118 ~~~~~~~i~~~P---------------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      .+++.|++.+.|               ++++++ +|+++.++.|..+.+++.+.|++.+.
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            578899999888               888887 99999999999999999999987763

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.48  E-value=1.7e-13  Score=115.39  Aligned_cols=105  Identities=15%  Similarity=0.139  Sum_probs=82.7

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHH-HH-
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLA-KE-  122 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~-~~-  122 (408)
                      .+.+++++.+...-.++++++|+||++||++|+.++|.+.++++++++ ++.++.|+++.       .    .+.+ ++ 
T Consensus        32 ~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~  111 (190)
T 2vup_A           32 EVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKF  111 (190)
T ss_dssp             CCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHH
T ss_pred             EEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhc
Confidence            344455554443224689999999999999999999999999999987 69999999872       1    1222 22 


Q ss_pred             ----------------------------cCCCcCc------EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          123 ----------------------------YNILAYP------TLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       123 ----------------------------~~i~~~P------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                                                  +++.++|      ++++++ +|+++.++.|..+.+.+.+.|++.+.
T Consensus       112 ~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  185 (190)
T 2vup_A          112 KAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE  185 (190)
T ss_dssp             CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence                                        4788899      888887 99999999999999999999988763

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.47  E-value=1.2e-13  Score=113.99  Aligned_cols=103  Identities=16%  Similarity=0.115  Sum_probs=78.6

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhH-HHHc-
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDL-AKEY-  123 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~-~~~~-  123 (408)
                      +..++++.+...-.++++++|.||++||++|+.++|.+.++++++++ ++.++.|+++.       .    .+. .+++ 
T Consensus        16 l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~   95 (169)
T 2v1m_A           16 VKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYG   95 (169)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHC
T ss_pred             eecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHHHhcC
Confidence            33444444332223689999999999999999999999999999987 69999999863       1    122 1222 


Q ss_pred             ----------------------------C-----CCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          124 ----------------------------N-----ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       124 ----------------------------~-----i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                                  +     |+++|++++++ +|+++.++.|..+.+.+.+.|++.+
T Consensus        96 ~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  166 (169)
T 2v1m_A           96 VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL  166 (169)
T ss_dssp             CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHH
T ss_pred             CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHh
Confidence                                        3     34458999997 9999999999999999999988765

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.46  E-value=8.4e-14  Score=115.18  Aligned_cols=102  Identities=16%  Similarity=0.159  Sum_probs=78.9

Q ss_pred             EEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHH------
Q 015368           59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLA------  120 (408)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~------  120 (408)
                      .+++++.++..-.++++++|+|||+||++|+ ++|.+.++++++++ ++.++.|+++.       .    .+++      
T Consensus        18 ~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~   96 (171)
T 3cmi_A           18 VDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGV   96 (171)
T ss_dssp             BBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CC
T ss_pred             EcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCC
Confidence            3344444432223689999999999999999 99999999999987 69999998741       1    1122      


Q ss_pred             ------------------------HHcCCCcCc------EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          121 ------------------------KEYNILAYP------TLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       121 ------------------------~~~~i~~~P------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                                              +.|++.++|      ++++++ +|+++.++.|..+.+.+.+.|++.+.
T Consensus        97 ~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A           97 TFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             CSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             CceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                                    247888999      888887 99999999999999999999988763

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.46  E-value=5.4e-12  Score=111.09  Aligned_cols=197  Identities=16%  Similarity=0.247  Sum_probs=145.0

Q ss_pred             CcEEc-ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSL-NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      .+..| +.++++..+..+++++|-|+++||   ....+.|.++|+.+++++.|+.+.   +.+++++|++.+ |++++|+
T Consensus         7 ~v~~l~s~~~~~~~l~~~~v~vvgff~~~~---~~~~~~f~~~A~~lr~~~~F~~~~---~~~v~~~~~~~~-p~i~~fk   79 (252)
T 2h8l_A            7 ASVPLRTEEEFKKFISDKDASIVGFFDDSF---SEAHSEFLKAASNLRDNYRFAHTN---VESLVNEYDDNG-EGIILFR   79 (252)
T ss_dssp             CEEECCSHHHHHHHHTSSSCEEEEEESCTT---SHHHHHHHHHHHHTTTTSCEEEEC---CHHHHHHHCSSS-EEEEEEC
T ss_pred             CceeecCHHHHHHHhhcCCeEEEEEECCCC---ChHHHHHHHHHHhcccCcEEEEEC---hHHHHHHhCCCC-CcEEEEc
Confidence            56778 467788888888899999999984   457889999999998899999885   577999999997 9999998


Q ss_pred             CC-------eEeEEe-eCCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCCCCc-------CHHHHH
Q 015368          136 AG-------VRQFQF-FGERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDLEGM-------ESEELA  200 (408)
Q Consensus       136 ~g-------~~~~~~-~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~-------~~~~~~  200 (408)
                      .+       .....| .|.++.+.|.+||..+.-|.+.+++. +....+ ...+ .++.|+......       ....+.
T Consensus        80 ~~~~~~kf~e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~-~n~~~~-~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~  156 (252)
T 2h8l_A           80 PSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTE-DNKDLI-QGKD-LLIAYYDVDYEKNAKGSNYWRNRVM  156 (252)
T ss_dssp             CGGGCCTTSCSEEECCCSSCCHHHHHHHHHHHSSCSSCEECT-TTHHHH-SSSS-EEEEEECCBTTTBHHHHHHHHHHHH
T ss_pred             chhhcccccccccccCCCCcCHHHHHHHHHhcccCCeeeccc-ccHhhh-cCCC-eEEEEeecchhhcchhHHHHHHHHH
Confidence            42       245678 89999999999999999999999965 445555 3444 455555432221       123344


Q ss_pred             HHh-ccCCc---eeEEEec---CHhHHhhcCCCC-CCCCCeEEEeecCCCcccccCCcCCHHH--HHHHHhcCC
Q 015368          201 AAS-KLHSD---VNFYQTT---SADVAEFFHIHP-KSKRPALIFLHLEAGKATPFRHQFTRLA--IANFVTHTK  264 (408)
Q Consensus       201 ~~a-~~~~~---~~f~~~~---~~~l~~~~~i~~-~~~~p~l~~~~~~~~~~~~y~g~~~~~~--i~~fi~~~~  264 (408)
                      .+| +++++   +.|+.+.   ...+.+.||+.. ....|.+++++.. +..+.+.++++.+.  |.+|++...
T Consensus       157 ~vA~~~~~k~~~~~F~~~d~~~~~~~~~~fgl~~~~~~~P~v~i~~~~-~~ky~~~~~~t~~~~~i~~F~~~~~  229 (252)
T 2h8l_A          157 MVAKKFLDAGHKLNFAVASRKTFSHELSDFGLESTAGEIPVVAIRTAK-GEKFVMQEEFSRDGKALERFLQDYF  229 (252)
T ss_dssp             HHHHHHHHTTCCCEEEEEETTTTHHHHGGGTCCCCSCSSCEEEEECTT-SCEEECCSCCCTTSHHHHHHHHHHH
T ss_pred             HHHHHccccCceEEEEEEchHHHHHHHHHcCCCCccCCCCEEEEEeCc-CcEecCCcccCcchHHHHHHHHHHH
Confidence            566 55555   8888763   345778899931 1258999988753 34455778888888  999998643

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.46  E-value=1.1e-13  Score=114.19  Aligned_cols=104  Identities=10%  Similarity=0.120  Sum_probs=80.9

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHHH-Hc-
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAK-EY-  123 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~-~~-  123 (408)
                      +.+++++.++..-.++++++|.||++||++|+.++|.+.++++++++ ++.++.|+++.       .    .+.++ ++ 
T Consensus        17 l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
T 2p5q_A           17 VKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFK   96 (170)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTC
T ss_pred             EEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcC
Confidence            33444444432223689999999999999999999999999999987 69999999862       1    22333 33 


Q ss_pred             ----------------------------CC--CcCc---EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          124 ----------------------------NI--LAYP---TLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       124 ----------------------------~i--~~~P---t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                                                  ++  .++|   ++++++ +|+++.++.|..+.+.+.+.|++.+.
T Consensus        97 ~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (170)
T 2p5q_A           97 SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLE  168 (170)
T ss_dssp             CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTT
T ss_pred             CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhh
Confidence                                        34  6678   888997 99999999999999999999988764

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.19  E-value=5.7e-15  Score=120.73  Aligned_cols=102  Identities=16%  Similarity=0.109  Sum_probs=77.6

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHH-HHHHhc-C-CcEEEEEeCcccHhHHHHc-----------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAA-AAKMLK-G-EADLVMVDAYLEKDLAKEY-----------  123 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~-~~~~~~-~-~v~~~~v~~~~~~~~~~~~-----------  123 (408)
                      +..++++.++..-.++++++|.||++||++|+.++|.+.+ +++.++ + ++.++.|++++.++.+++|           
T Consensus        18 l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~   97 (159)
T 2ls5_A           18 ITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLG   97 (159)
Confidence            4445555555333467899999999999999999999998 888887 3 8999999988765544443           


Q ss_pred             -----------C--CCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          124 -----------N--ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       124 -----------~--i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                 +  +.++|++++++ +|+++.++.| .+.+++.+++++..
T Consensus        98 ~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l~  147 (159)
T 2ls5_A           98 LDPGADIFAKYALRDAGITRNVLIDREGKIVKLTRL-YNEEEFASLVQQIN  147 (159)
Confidence                       3  67799999996 9988888877 46667777765543

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.44  E-value=3.4e-13  Score=113.17  Aligned_cols=105  Identities=13%  Similarity=0.124  Sum_probs=81.7

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c-HhHHH----H-
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E-KDLAK----E-  122 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~-~~~~~----~-  122 (408)
                      .+.+++++.+...-.++|+++|+|||+||++|+.++|.+.++++++++ ++.++.|+++.       . ..+.+    + 
T Consensus        30 ~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~  109 (187)
T 3dwv_A           30 EVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKF  109 (187)
T ss_dssp             CCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCC
T ss_pred             EEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhcc
Confidence            445556655543334789999999999999999999999999999987 69999998762       1 11111    1 


Q ss_pred             -------------------------------cCCCcCc---EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          123 -------------------------------YNILAYP---TLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       123 -------------------------------~~i~~~P---t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                                                     +++.++|   ++++++ +|+++.++.|..+.+.+.+.|++.+.
T Consensus       110 ~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~  183 (187)
T 3dwv_A          110 KAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLG  183 (187)
T ss_dssp             CCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC-
T ss_pred             CCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence                                           2344567   999997 99999999999999999999988874

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.44  E-value=1.2e-13  Score=115.25  Aligned_cols=103  Identities=13%  Similarity=0.091  Sum_probs=79.2

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHHHH-c-
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKE-Y-  123 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~-~-  123 (408)
                      +..++++.+...-.++++++|+||++||++|+.++|.+.++++++++ ++.++.|+++.       .    .+.+++ + 
T Consensus        34 l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~  113 (181)
T 2p31_A           34 AVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYS  113 (181)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHC
T ss_pred             eecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcC
Confidence            33444444432223689999999999999999999999999999987 69999999863       1    123333 2 


Q ss_pred             ----------------------CCCcCc-------EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          124 ----------------------NILAYP-------TLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       124 ----------------------~i~~~P-------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                            ++.++|       ++++++ +|+++.++.|..+.+++.+.|++.+
T Consensus       114 ~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          114 VSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             CCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             CCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                                  244678       888887 9999999999999999999998754

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.42  E-value=2.7e-13  Score=115.59  Aligned_cols=90  Identities=8%  Similarity=-0.021  Sum_probs=73.6

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc--------cHh---HHH------HcC--------
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------EKD---LAK------EYN--------  124 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------~~~---~~~------~~~--------  124 (408)
                      .++++++|+|||+||++|++++|.++++++++++ ++.++.|++++        ..+   .++      +++        
T Consensus        45 ~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~~~fp~l~d  124 (208)
T 2f8a_A           45 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEK  124 (208)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCC
T ss_pred             cCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccccceEEEEE
Confidence            3689999999999999999999999999999987 69999999861        122   222      333        


Q ss_pred             ---------------------------------------------CCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHh
Q 015368          125 ---------------------------------------------ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       125 ---------------------------------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                                                                   |.+.|++++++ +|+++.++.|..+.++|.+.|++
T Consensus       125 ~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflID~~G~i~~~~~g~~~~~~l~~~I~~  204 (208)
T 2f8a_A          125 CEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA  204 (208)
T ss_dssp             CCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHH
T ss_pred             eecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEEcCCCcEEEEeCCCCCHHHHHHHHHH
Confidence                                                         33348899998 99999999999999999998887


Q ss_pred             Hh
Q 015368          159 KM  160 (408)
Q Consensus       159 ~~  160 (408)
                      .+
T Consensus       205 ll  206 (208)
T 2f8a_A          205 LL  206 (208)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.42  E-value=1.5e-13  Score=113.69  Aligned_cols=88  Identities=14%  Similarity=0.200  Sum_probs=76.0

Q ss_pred             CCCcEEEEEecCCChh-HHhhhHHHHHHHHHhcC----CcEEEEEeCccc----------------------------Hh
Q 015368           72 KNRNVMVMFYANWCYW-SKKLAPEFAAAAKMLKG----EADLVMVDAYLE----------------------------KD  118 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~-C~~~~p~~~~~~~~~~~----~v~~~~v~~~~~----------------------------~~  118 (408)
                      ++++++|+||++||++ |+.++|.+.++++++++    ++.++.|+++.+                            ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            6799999999999997 99999999999999874    699999998743                            35


Q ss_pred             HHHHcCC---------------CcCcEEEEEeCCeEeEEeeCCC--CHHHHHHHHHhH
Q 015368          119 LAKEYNI---------------LAYPTLYLFVAGVRQFQFFGER--TRDVISAWVREK  159 (408)
Q Consensus       119 ~~~~~~i---------------~~~Pt~~~~~~g~~~~~~~g~~--~~~~l~~~i~~~  159 (408)
                      +++.|++               .++|+++++++|+++.++.|..  +.+++.+.|++.
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDKAEATDRVVADLQAL  171 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCCCCCHHHHHHHHHHh
Confidence            6666664               5789999999998889999988  899999998764

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.41  E-value=5.1e-13  Score=109.09  Aligned_cols=100  Identities=7%  Similarity=0.135  Sum_probs=77.7

Q ss_pred             EEcChhhHHHHHcCCC-cEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc--------------------
Q 015368           59 VSLNGKNFSEFMGKNR-NVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------------------  115 (408)
Q Consensus        59 ~~l~~~~~~~~~~~~~-~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------------------  115 (408)
                      ...+++.+...-..++ +++|.|| ++||++|+.++|.+.++++++++ ++.++.|+++.                    
T Consensus        21 ~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d  100 (160)
T 1xvw_A           21 RDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSD  100 (160)
T ss_dssp             ECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEEC
T ss_pred             EcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEec
Confidence            3344443332222566 9999998 99999999999999999999976 79999999864                    


Q ss_pred             ---cHhHHHHcCCC----cCc--EEEEEe-CCeEeEEeeCCCC----HHHHHHHHHh
Q 015368          116 ---EKDLAKEYNIL----AYP--TLYLFV-AGVRQFQFFGERT----RDVISAWVRE  158 (408)
Q Consensus       116 ---~~~~~~~~~i~----~~P--t~~~~~-~g~~~~~~~g~~~----~~~l~~~i~~  158 (408)
                         +..+++.|++.    ++|  ++++++ +|+++.++.|..+    .+++.+.+++
T Consensus       101 ~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~  157 (160)
T 1xvw_A          101 FWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAA  157 (160)
T ss_dssp             TTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             CCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence               56789999999    999  888887 9999888988753    4555555543

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.41  E-value=6e-13  Score=110.97  Aligned_cols=104  Identities=16%  Similarity=0.156  Sum_probs=80.1

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHHHH-c
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKE-Y  123 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~-~  123 (408)
                      .+.+++++.+...-.++++++|+|||+||++|+.++|.+.++++++++ ++.++.|+++.       .    .+++++ +
T Consensus        22 ~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~  101 (180)
T 3kij_A           22 EVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNY  101 (180)
T ss_dssp             EEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHH
T ss_pred             EEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhc
Confidence            344555555543334789999999999999999999999999999988 69999998764       2    234555 4


Q ss_pred             CCC--------------------------cCcE----EEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          124 NIL--------------------------AYPT----LYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       124 ~i~--------------------------~~Pt----~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++.                          ++|+    +++++ +|+++.++.|..+.+.+.+.|.+.+
T Consensus       102 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL  169 (180)
T 3kij_A          102 GVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV  169 (180)
T ss_dssp             CCCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHH
T ss_pred             CCCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence            432                          2676    77887 9999999999998888887777665

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.40  E-value=3.3e-13  Score=112.88  Aligned_cols=102  Identities=13%  Similarity=0.020  Sum_probs=76.8

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHHHHc--
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKEY--  123 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~~--  123 (408)
                      +..++++.+...-.++++++|.||++||++|+.++|.+.++++++++ ++.++.|+++.       .    .+.++++  
T Consensus        32 l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~  111 (183)
T 2obi_A           32 AKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNV  111 (183)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHTTTC
T ss_pred             EEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHHHHcCC
Confidence            34445544432223689999999999999999999999999999987 69999998862       1    1122222  


Q ss_pred             -----------------------------C-----CCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          124 -----------------------------N-----ILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       124 -----------------------------~-----i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                                                   +     |+.+|++++++ +|+++.++.|..+.++|.++|++.
T Consensus       112 ~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  182 (183)
T 2obi_A          112 KFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  182 (183)
T ss_dssp             CSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHTTSGGG
T ss_pred             CceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHh
Confidence                                         3     33359999997 999999999998888888777654

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.40  E-value=3.2e-13  Score=113.41  Aligned_cols=89  Identities=16%  Similarity=0.252  Sum_probs=78.1

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------------cHhHHHHcC
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN  124 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~  124 (408)
                      .+++++|+|| ++||++|+.++|.+.++++++++ ++.++.|+++.                         +..+++.|+
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            5799999999 99999999999999999999976 79999999874                         346888999


Q ss_pred             CC------cCcEEEEEe-CCeEeEEeeCCC----CHHHHHHHHHhHh
Q 015368          125 IL------AYPTLYLFV-AGVRQFQFFGER----TRDVISAWVREKM  160 (408)
Q Consensus       125 i~------~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~i~~~~  160 (408)
                      +.      ++|++++++ +|+++.++.|..    +.+++.+.|++..
T Consensus       110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  156 (187)
T 1we0_A          110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQ  156 (187)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred             CCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            99      999999997 998888888864    6788888887765

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.40  E-value=4e-13  Score=112.57  Aligned_cols=102  Identities=13%  Similarity=0.004  Sum_probs=77.0

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------c----HhHHHHcCC
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------E----KDLAKEYNI  125 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------~----~~~~~~~~i  125 (408)
                      +.+++++.++..-.++++++|.||++||++|+.++|.+.++++++++ ++.++.|+++.       .    .++++++++
T Consensus        34 l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~~~  113 (185)
T 2gs3_A           34 AKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNV  113 (185)
T ss_dssp             EEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHTTC
T ss_pred             eEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHcCC
Confidence            33444444432223679999999999999999999999999999987 69999999863       1    223333322


Q ss_pred             -------------------------------C-----cCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          126 -------------------------------L-----AYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       126 -------------------------------~-----~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                                                     .     .+|++++++ +|+++.++.|..+.+++.+.|++.
T Consensus       114 ~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          114 KFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY  184 (185)
T ss_dssp             CSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGGGHHHH
T ss_pred             CCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHHHHHHh
Confidence                                           2     258999997 999999999998888888887764

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.10  E-value=2.5e-14  Score=114.56  Aligned_cols=86  Identities=19%  Similarity=0.271  Sum_probs=68.3

Q ss_pred             cEEcChhhHHHHH-cCCC-cEEEEEecCCChhHHhhhHHHHHHHHHhc---CCcEEEEEeCccc----------------
Q 015368           58 VVSLNGKNFSEFM-GKNR-NVMVMFYANWCYWSKKLAPEFAAAAKMLK---GEADLVMVDAYLE----------------  116 (408)
Q Consensus        58 ~~~l~~~~~~~~~-~~~~-~~~v~f~a~wC~~C~~~~p~~~~~~~~~~---~~v~~~~v~~~~~----------------  116 (408)
                      +..++++.++..- .+++ +++|+||++||++|+.+.|.+.+++++++   .++.++.|++++.                
T Consensus         9 l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~   88 (143)
T 2lus_A            9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWL   88 (143)
Confidence            3344555554322 3566 99999999999999999999999999983   3788888888755                


Q ss_pred             ---------HhHHHHcCCCcCcEEEEEe-CCeEeEEe
Q 015368          117 ---------KDLAKEYNILAYPTLYLFV-AGVRQFQF  143 (408)
Q Consensus       117 ---------~~~~~~~~i~~~Pt~~~~~-~g~~~~~~  143 (408)
                               ..++++|+|.++|++++++ +|+++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  125 (143)
T 2lus_A           89 AIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMN  125 (143)
Confidence                     3688999999999999998 89766553

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.39  E-value=3.4e-13  Score=114.36  Aligned_cols=89  Identities=13%  Similarity=0.247  Sum_probs=78.2

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      ++++++|+|| ++||++|+.++|.+.++++++++ ++.++.|+++.                            +.++++
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            5789999999 99999999999999999999976 69999999874                            357889


Q ss_pred             HcCCC-----cCcEEEEEe-CCeEeEEeeCCC----CHHHHHHHHHhHh
Q 015368          122 EYNIL-----AYPTLYLFV-AGVRQFQFFGER----TRDVISAWVREKM  160 (408)
Q Consensus       122 ~~~i~-----~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~i~~~~  160 (408)
                      .|++.     ++|++++++ +|+++.++.|..    +.+++.+.|++..
T Consensus       112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             HhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99999     999999998 998888888865    6788888887665

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.39  E-value=7.4e-13  Score=111.93  Aligned_cols=90  Identities=12%  Similarity=0.181  Sum_probs=79.6

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------------cHhHHHHcC
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN  124 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~  124 (408)
                      .+++++|+|| ++||++|+.++|.+.++++++++ ++.++.|+++.                         +..+++.|+
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            5789999999 99999999999999999999987 79999999874                         346788999


Q ss_pred             CC-----cCcEEEEEe-CCeEeEEeeCCC----CHHHHHHHHHhHhC
Q 015368          125 IL-----AYPTLYLFV-AGVRQFQFFGER----TRDVISAWVREKMT  161 (408)
Q Consensus       125 i~-----~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~i~~~~~  161 (408)
                      +.     ++|++++++ +|+++.++.|..    +.+++.+.|++...
T Consensus       124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             CcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            99     999999997 998888888765    78999999988764

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.39  E-value=1.8e-12  Score=103.89  Aligned_cols=90  Identities=10%  Similarity=0.080  Sum_probs=74.3

Q ss_pred             HcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcc--cHhHHHHcCCCcCcEEEEEe-C-CeEeEE
Q 015368           70 MGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYL--EKDLAKEYNILAYPTLYLFV-A-GVRQFQ  142 (408)
Q Consensus        70 ~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~-~-g~~~~~  142 (408)
                      ..++|+++|+||++||.+|+.+....   .++.+.++.++.++++|.+.  ...++++|++.++|++++++ + |+.+..
T Consensus        39 k~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~  118 (153)
T 2dlx_A           39 QMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVE  118 (153)
T ss_dssp             HHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEE
T ss_pred             HHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeee
Confidence            35689999999999999999997655   55555555589999999865  34688999999999999998 5 767777


Q ss_pred             eeCCCCHHHHHHHHHhHh
Q 015368          143 FFGERTRDVISAWVREKM  160 (408)
Q Consensus       143 ~~g~~~~~~l~~~i~~~~  160 (408)
                      +.| .+++++.++|++.+
T Consensus       119 ~~g-~~~~~fl~~L~~~l  135 (153)
T 2dlx_A          119 WHQ-LDVSSFLDQVTGFL  135 (153)
T ss_dssp             ESS-CCHHHHHHHHHHHH
T ss_pred             cCC-CCHHHHHHHHHHHH
Confidence            666 89999999988776

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.38  E-value=8e-11  Score=103.36  Aligned_cols=196  Identities=14%  Similarity=0.113  Sum_probs=143.1

Q ss_pred             CcEEcC-hhhHHHHHcC-CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           57 DVVSLN-GKNFSEFMGK-NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        57 ~~~~l~-~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      .+..|+ .++++..+.. +++++|-|++++|   ....+.|.++|+.+++++.|+.+.   +.++++++++.+ |++++|
T Consensus         7 ~v~~l~s~~~~~~~~~~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~~~~F~~t~---~~~v~~~~~v~~-p~ivlf   79 (250)
T 3ec3_A            7 PSKEILTLKQVQEFLKDGDDVVILGVFQGVG---DPGYLQYQDAANTLREDYKFHHTF---STEIAKFLKVSL-GKLVLM   79 (250)
T ss_dssp             SSEECCCHHHHHHHHHHCSSCEEEEECSCTT---CHHHHHHHHHHHHHTTTCCEEEEC---CHHHHHHHTCCS-SEEEEE
T ss_pred             CceecCCHHHHHHHHhcCCCeEEEEEEcCCC---chHHHHHHHHHHhhhcCcEEEEEC---cHHHHHHcCCCC-CeEEEE
Confidence            566774 4788888877 8899999999985   567889999999998899999875   678999999998 999999


Q ss_pred             eCC-------eEeEEee--CCCCHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEEEEecCC-CC--c-----CHH
Q 015368          135 VAG-------VRQFQFF--GERTRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVLGFLHDL-EG--M-----ESE  197 (408)
Q Consensus       135 ~~g-------~~~~~~~--g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~-~~--~-----~~~  197 (408)
                      +.+       .....|.  |..+.+.|.+||..+..|.+.+++.. ....... ..+.+++|+... ..  .     ...
T Consensus        80 k~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~~-n~~~~~~-~~~l~~~~~~~d~~~~~~~~~~~~~~  157 (250)
T 3ec3_A           80 QPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTS-NDAKRYS-KRPLVVVYYSVDFSFDYRTATQFWRN  157 (250)
T ss_dssp             CCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHHHSSCTEEEECTT-THHHHSC-SSSEEEEEECCCCSTTTHHHHHHHHH
T ss_pred             ecchhhccccccceeccCCCCCCHHHHHHHHHHcCCCceeecCcc-chhhhhc-cCccEEEEEecccccccchhHHHHHH
Confidence            842       2346778  57999999999999999999999654 4444444 455555565422 21  1     234


Q ss_pred             HHHHHh-ccCCceeEEEec---CHhHHhhcCCCCCCCC-CeEEEeecCCCcccccC-CcCCHHHHHHHHhcCC
Q 015368          198 ELAAAS-KLHSDVNFYQTT---SADVAEFFHIHPKSKR-PALIFLHLEAGKATPFR-HQFTRLAIANFVTHTK  264 (408)
Q Consensus       198 ~~~~~a-~~~~~~~f~~~~---~~~l~~~~~i~~~~~~-p~l~~~~~~~~~~~~y~-g~~~~~~i~~fi~~~~  264 (408)
                      .+..+| +++ ++.|+.+.   .....+.||+... +. |.++++... +..+.+. ++++.+.|.+|++...
T Consensus       158 ~~~~vAk~~k-ki~F~~~d~~~~~~~l~~fgl~~~-~~~p~~~~~~~~-~~ky~~~~~~~t~~~i~~Fv~~~~  227 (250)
T 3ec3_A          158 KVLEVAKDFP-EYTFAIADEEDYATEVKDLGLSES-GGDVNAAILDES-GKKFAMEPEEFDSDALREFVMAFK  227 (250)
T ss_dssp             HHHHHHTTCT-TSEEEEEETTTTHHHHHHTTCSSC-SCSCEEEEECTT-SCEEECCCCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhc-ceeEEEEcHHHHHHHHHHcCCCcc-CCCcEEEEEcCC-CceecCCcccCCHHHHHHHHHHHH
Confidence            566777 566 88888763   2346778898742 23 577766643 3445555 6789999999998643

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.37  E-value=1.8e-12  Score=114.54  Aligned_cols=82  Identities=20%  Similarity=0.301  Sum_probs=65.1

Q ss_pred             hHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc------ccHhHHHHcCCCcCcEEEEEeCCe
Q 015368           65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY------LEKDLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        65 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~------~~~~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      .+.+.+.+.  .+|+|||+||+||+++.|.|++++++++      .|||+      +++++|++++|+++||+++  +|+
T Consensus       191 ~la~~l~~~--~vV~F~A~WC~~Ck~l~p~le~lA~~l~------~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i--~G~  260 (291)
T 3kp9_A          191 GLAAHLRQI--GGTMYGAYWCPHCQDQKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWII--NGR  260 (291)
T ss_dssp             HHHHHHHHT--TCEEEECTTCHHHHHHHHHHGGGGGGSC------EEESCSSCSSSCCCHHHHTTTCCSTTEEEE--TTE
T ss_pred             HHHHHhCCC--CEEEEECCCCHHHHHHHHHHHHHHHHcC------EEEEeecCchhhHHHHHHHcCCcccCeEEE--CCE
Confidence            444444333  3689999999999999999999987653      45554      3789999999999999554  885


Q ss_pred             EeEEeeCCCCHHHHHHHHHhH
Q 015368          139 RQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       139 ~~~~~~g~~~~~~l~~~i~~~  159 (408)
                         ++.|.++.+++.+|+...
T Consensus       261 ---~~~G~~~~~~L~~~l~~~  278 (291)
T 3kp9_A          261 ---TYTGVRSLEALAVASGYP  278 (291)
T ss_dssp             ---EEESCCCHHHHHHHTCCC
T ss_pred             ---EecCCCCHHHHHHHHCCC
Confidence               499999999999998543

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.35  E-value=1.6e-11  Score=114.91  Aligned_cols=199  Identities=18%  Similarity=0.215  Sum_probs=133.1

Q ss_pred             CcccccChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHh-cc------CCceeEEEe---cCHhHHhhcCCCCCC
Q 015368          163 GTYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KL------HSDVNFYQT---TSADVAEFFHIHPKS  229 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~------~~~~~f~~~---~~~~l~~~~~i~~~~  229 (408)
                      .+..+ +.++++..+..++.++|.|+++||.++   .+.+..++ .+      .+.+.|+.+   .+.++++++++.   
T Consensus         6 ~v~~l-~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~---   81 (382)
T 2r2j_A            6 EITSL-DTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRIS---   81 (382)
T ss_dssp             --CBC-CTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCC---
T ss_pred             ceEEC-CHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCC---
Confidence            35555 457788888888999999999999985   44566666 44      345888876   467899999999   


Q ss_pred             CCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCCceEeecc-ccccccccCCccEEEEEeeCCCchHHHHHHHHHHH
Q 015368          230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTI-HNAQFVFQDPRKQLWLFAPAYGSDKVILTFEEVAK  308 (408)
Q Consensus       230 ~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~-~~~~~~~~~~~~~~i~f~~~~~~~~~~~~~~~vA~  308 (408)
                      ++|++++|+.+......|.|..+.+.|.+|+....-|.+..++. +.+.. +....+.++.|....+ ......|.++|.
T Consensus        82 ~~Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~~~-~~~~~~f~~~A~  159 (382)
T 2r2j_A           82 KYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSKRNIIGYFEQKD-SDNYRVFERVAN  159 (382)
T ss_dssp             EESEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHSCCCEEC-------------CCEEEEEESCSS-SHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCcEeeeeecCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCCCEEEEEECCCC-ChhHHHHHHHHH
Confidence            69999999865322226999999999999999988888888864 45666 4444455555554433 345678999999


Q ss_pred             HhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc--CCccccCCCCC-ChHHHHHHHHHHhcCcc
Q 015368          309 ALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR--DAKKYVLNGEL-TLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       309 ~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~--~~~~y~~~~~~-~~~~i~~Fi~~~~~gk~  380 (408)
                      .++++   +.|+.+..       .+.+.++++.  .| +++...  +.....|.|.+ +.+.|.+||+...-..+
T Consensus       160 ~~~~~---~~F~~~~~-------~~~~~~~v~~--~p-i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v  221 (382)
T 2r2j_A          160 ILHDD---CAFLSAFG-------DVSKPERYSG--DN-IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLV  221 (382)
T ss_dssp             HHTTT---CEEEEEES-------CC----------CE-EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHSCSS
T ss_pred             Hhhcc---ceEEEEeh-------hhHHhhCCCC--Cc-eEECCCCCCCcCcccCCCCCCHHHHHHHHHhcccCce
Confidence            99998   99988874       1346677743  45 555544  23456688888 89999999998765544

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.34  E-value=3.9e-13  Score=103.42  Aligned_cols=87  Identities=15%  Similarity=0.228  Sum_probs=65.9

Q ss_pred             hHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-----HhHHHHcCCCcCcEEEEEeCCeE
Q 015368           65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-----KDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        65 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      .++..+. ++++++ ||++||++|+.+.|.+++++.    .+.++.||.+.+     ..++++|++.++|++  |.+|+.
T Consensus        12 ~~~~~~~-~~~vv~-f~a~~C~~C~~~~~~l~~~~~----~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~   83 (116)
T 2e7p_A           12 KAKELAS-SAPVVV-FSKTYCGYCNRVKQLLTQVGA----SYKVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQ   83 (116)
T ss_dssp             HHHHHHT-SSSEEE-EECTTCHHHHHHHHHHHHHTC----CCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEE
T ss_pred             HHHHHHc-CCCEEE-EECCCChhHHHHHHHHHHcCC----CeEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence            3444554 456666 999999999999999988754    356666666655     569999999999999  558988


Q ss_pred             eEEeeCCC---CHHHHHHHHHhH
Q 015368          140 QFQFFGER---TRDVISAWVREK  159 (408)
Q Consensus       140 ~~~~~g~~---~~~~l~~~i~~~  159 (408)
                      +..+.|..   +.+.|.++|.+.
T Consensus        84 v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           84 IGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             EECHHHHHHHHHTTCHHHHHHHT
T ss_pred             ECChHHHHHHHhCChHHHHHHHc
Confidence            77777655   666788888764

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.33  E-value=7.4e-12  Score=102.95  Aligned_cols=102  Identities=10%  Similarity=0.117  Sum_probs=79.4

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCC-ChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc---------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---------------------  115 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~w-C~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~---------------------  115 (408)
                      +...+++.++..-..+++++|.||++| |++|+.++|.+.++++++ .++.++.|++|.                     
T Consensus        29 l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d  107 (167)
T 2jsy_A           29 VLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSD  107 (167)
T ss_dssp             EEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEG
T ss_pred             EECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeC
Confidence            444555544422236789999999999 999999999999999999 689999998763                     


Q ss_pred             --cHhHHHHcCCCc------CcEEEEEe-CCeEeEEeeCC-----CCHHHHHHHHHhHh
Q 015368          116 --EKDLAKEYNILA------YPTLYLFV-AGVRQFQFFGE-----RTRDVISAWVREKM  160 (408)
Q Consensus       116 --~~~~~~~~~i~~------~Pt~~~~~-~g~~~~~~~g~-----~~~~~l~~~i~~~~  160 (408)
                        +.++++.|++..      .|++++++ +|+++.++.|.     .+.+++.+.|++.+
T Consensus       108 ~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~ll  166 (167)
T 2jsy_A          108 HRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKALV  166 (167)
T ss_dssp             GGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred             CchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence              346788899987      49999998 99888888763     24477877777653

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.30  E-value=1.1e-11  Score=105.67  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=80.0

Q ss_pred             CcEEcC-hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc--------c---HhHHH--
Q 015368           57 DVVSLN-GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------E---KDLAK--  121 (408)
Q Consensus        57 ~~~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------~---~~~~~--  121 (408)
                      .+.+++ ++.+...--++|+++|+|||+||++|+ ++|.+++++++|++ ++.++.|+|++        .   .++++  
T Consensus        39 ~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~~~i~~f~~~~  117 (215)
T 2i3y_A           39 EAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYV  117 (215)
T ss_dssp             EEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHT
T ss_pred             EeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCHHHHHHHHHhc
Confidence            344555 554443334789999999999999999 89999999999976 79999999862        1   33455  


Q ss_pred             ----HcCCC-------------------------------------------------cCcEEEEEe-CCeEeEEeeCCC
Q 015368          122 ----EYNIL-------------------------------------------------AYPTLYLFV-AGVRQFQFFGER  147 (408)
Q Consensus       122 ----~~~i~-------------------------------------------------~~Pt~~~~~-~g~~~~~~~g~~  147 (408)
                          ++++.                                                 ..|+.++++ +|+++.+|.|..
T Consensus       118 ~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G~vv~~~~g~~  197 (215)
T 2i3y_A          118 RPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRA  197 (215)
T ss_dssp             SSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTS
T ss_pred             cchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCCeEEEEeCCCC
Confidence                55431                                                 016889998 999999999999


Q ss_pred             CHHHHHHHHHhHhC
Q 015368          148 TRDVISAWVREKMT  161 (408)
Q Consensus       148 ~~~~l~~~i~~~~~  161 (408)
                      +.++|.+.|++.+.
T Consensus       198 ~~~~l~~~I~~ll~  211 (215)
T 2i3y_A          198 TVSSVKTDILAYLK  211 (215)
T ss_dssp             CHHHHHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999987763

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.29  E-value=5.5e-12  Score=107.17  Aligned_cols=89  Identities=17%  Similarity=0.268  Sum_probs=76.5

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      .+++++|.|| ++||++|..++|.+.++++++++ ++.++.|++|.                            +.++++
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~  114 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  114 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHH
Confidence            5789999999 99999999999999999999976 79999999874                            346888


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhHh
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREKM  160 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~~  160 (408)
                      .|++.      ++|++++++ +|++..++.|.    .+.+++.+.|++..
T Consensus       115 ~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          115 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHhh
Confidence            99999      999999997 99888887764    45688888887654

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.29  E-value=3.8e-12  Score=109.54  Aligned_cols=89  Identities=18%  Similarity=0.354  Sum_probs=76.3

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      .+++++|.|| ++||++|+.++|.+.++++++++ ++.++.|+++.                            +.++++
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~  134 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  134 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHH
Confidence            5699999999 99999999999999999999975 79999998864                            346889


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhHh
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREKM  160 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~~  160 (408)
                      .|++.      ++|++++++ +|+++.++.|.    .+.+++.+.|+...
T Consensus       135 ~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          135 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            99999      999999997 99888877765    46688888887655

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.29  E-value=6e-11  Score=103.67  Aligned_cols=143  Identities=12%  Similarity=0.121  Sum_probs=98.0

Q ss_pred             CCCcEEEEEe-cCCChhHH-hhhHHHHHHHHHhcC-Cc-EEEEEeCcc----------------------cHhHHHHcCC
Q 015368           72 KNRNVMVMFY-ANWCYWSK-KLAPEFAAAAKMLKG-EA-DLVMVDAYL----------------------EKDLAKEYNI  125 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~-~~~p~~~~~~~~~~~-~v-~~~~v~~~~----------------------~~~~~~~~~i  125 (408)
                      ++++++|+|| ++||++|. .++|.+.++++++++ ++ .++.|+.+.                      +..+++.||+
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv  111 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFTEGMGM  111 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHHHHhCc
Confidence            6789999999 99999999 999999999999875 79 899998763                      2346778887


Q ss_pred             C-----------cCcEEEEEeCCeEeEEeeCCC---------CHHHHHHHHHhHhCCCcccccChhHHHHHhccCCeEEE
Q 015368          126 L-----------AYPTLYLFVAGVRQFQFFGER---------TRDVISAWVREKMTLGTYSITTTDEAERILTVESKLVL  185 (408)
Q Consensus       126 ~-----------~~Pt~~~~~~g~~~~~~~g~~---------~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi  185 (408)
                      .           ..|+++++++|++...+.|..         +.+++.+.+....                +  ....++
T Consensus       112 ~~~~~~~g~~~~~~p~t~li~~G~i~~~~~~~~~~~~~~~~~~~~~il~~l~~~~----------------i--~~~~i~  173 (241)
T 1nm3_A          112 LVGKEDLGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYLAPQH----------------Q--VQESIS  173 (241)
T ss_dssp             EEECTTTTCCEEECCEEEEEETTEEEEEEECCSCSSCCCSSSSHHHHHHHHCTTS----------------C--CCCCEE
T ss_pred             eeecccccCcccceeEEEEEECCEEEEEEEeccCCCccceecCHHHHHHHhhhhc----------------c--ccceEE
Confidence            5           348877779998888887753         4455544443211                1  122355


Q ss_pred             EEecCCCCcCHHHHHHHhccCCceeEEEec-C---HhHHhhcCCCCCCCCCeEE
Q 015368          186 GFLHDLEGMESEELAAASKLHSDVNFYQTT-S---ADVAEFFHIHPKSKRPALI  235 (408)
Q Consensus       186 ~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~-~---~~l~~~~~i~~~~~~p~l~  235 (408)
                      +|..++|..+.+.-..+....-.+....+. +   .++.+.++..   +.|.++
T Consensus       174 ly~~~~Cp~C~~a~~~L~~~~i~~~~~~i~~~~~~~~l~~~~g~~---~vP~~~  224 (241)
T 1nm3_A          174 IFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVSVRAVSGRT---TVPQVF  224 (241)
T ss_dssp             EEECSSCHHHHHHHHHHHHHTCCCEEEETTTTCCHHHHHHHTCCS---SSCEEE
T ss_pred             EEECCCChHHHHHHHHHHHcCCceEEEECCCchHHHHHHHHhCCC---CcCEEE
Confidence            688889988776655555433333333332 1   3466667765   478876

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.29  E-value=7.1e-12  Score=107.18  Aligned_cols=89  Identities=18%  Similarity=0.313  Sum_probs=75.8

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      ++++++|.|| ++||++|+.++|.+.++++++++ ++.++.|++|.                            +.++++
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  130 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISK  130 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHH
Confidence            6789999999 99999999999999999999974 79999998764                            346889


Q ss_pred             HcCCC-----cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhHh
Q 015368          122 EYNIL-----AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREKM  160 (408)
Q Consensus       122 ~~~i~-----~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~~  160 (408)
                      .|++.     .+|++++++ +|+++..+.|.    .+.+++.+.|+...
T Consensus       131 ~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          131 DYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99999     899999998 99888887764    35788888887654

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.29  E-value=4.4e-12  Score=106.84  Aligned_cols=89  Identities=20%  Similarity=0.320  Sum_probs=75.5

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      ++++++|.|| ++||++|+.++|.+.++++++++ ++.++.|+++.                            +.++++
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  109 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  109 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHH
Confidence            6789999999 99999999999999999999964 79999998863                            246889


Q ss_pred             HcCCC-----cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhHh
Q 015368          122 EYNIL-----AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREKM  160 (408)
Q Consensus       122 ~~~i~-----~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~~  160 (408)
                      .|++.     ++|++++++ +|+++..+.|.    .+.+++.+.|+...
T Consensus       110 ~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          110 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHHH
T ss_pred             HhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence            99999     899999997 99888888774    34777877776554

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.28  E-value=8.5e-12  Score=103.27  Aligned_cols=103  Identities=18%  Similarity=0.180  Sum_probs=77.5

Q ss_pred             EEcChhhHHHHHcCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhcC---CcEEEEEeCcc---c---------------
Q 015368           59 VSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG---EADLVMVDAYL---E---------------  116 (408)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~---~---------------  116 (408)
                      ..++++.++..-..+++++|+||++||+ +|..++|.+.++++++++   ++.++.|+++.   .               
T Consensus        19 ~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~   98 (174)
T 1xzo_A           19 QNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSF   98 (174)
T ss_dssp             ECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCG
T ss_pred             EcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCC
Confidence            3344443332223689999999999999 999999999999999875   39999999872   1               


Q ss_pred             ----------HhHHHH----------------cCCCcCcEEEEEe-CCeEeEEeeCCC--CHHHHHHHHHhHhC
Q 015368          117 ----------KDLAKE----------------YNILAYPTLYLFV-AGVRQFQFFGER--TRDVISAWVREKMT  161 (408)
Q Consensus       117 ----------~~~~~~----------------~~i~~~Pt~~~~~-~g~~~~~~~g~~--~~~~l~~~i~~~~~  161 (408)
                                .++++.                +++.+.|++++++ +|+++.++.|..  +.+++.+.|++.+.
T Consensus        99 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~  172 (174)
T 1xzo_A           99 DNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST  172 (174)
T ss_dssp             GGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTC
T ss_pred             cceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence                      112222                2456789999998 999999999976  58899999987763

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.28  E-value=9.6e-12  Score=105.44  Aligned_cols=104  Identities=13%  Similarity=0.107  Sum_probs=77.8

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChh-HHhhhHHHHHHHHHhc----CCcEEEEEeCcc----------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYW-SKKLAPEFAAAAKMLK----GEADLVMVDAYL----------------  115 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~-C~~~~p~~~~~~~~~~----~~v~~~~v~~~~----------------  115 (408)
                      .+.+.+++.++..-..+++++|+||++||++ |..++|.+.+++++++    +++.++.|++|.                
T Consensus        25 ~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~  104 (200)
T 2b7k_A           25 HLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFH  104 (200)
T ss_dssp             EEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSC
T ss_pred             EEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcC
Confidence            3444555544422236899999999999997 9999999999888775    379999998873                


Q ss_pred             ------------cHhHHHHcCCC-cCc---------------EEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          116 ------------EKDLAKEYNIL-AYP---------------TLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       116 ------------~~~~~~~~~i~-~~P---------------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                  ...+++.||+. +.|               ++++++ +|+++..+.|..+.+.+.+.|.+.+
T Consensus       105 ~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~~~~~~~~~i~~~l  178 (200)
T 2b7k_A          105 PSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV  178 (200)
T ss_dssp             TTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHH
T ss_pred             CCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence                        13577888887 444               778887 9999889999888888888777766

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=99.28  E-value=1e-11  Score=95.80  Aligned_cols=103  Identities=16%  Similarity=0.244  Sum_probs=91.7

Q ss_pred             hHhCCCccc--ccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEE
Q 015368          158 EKMTLGTYS--ITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALI  235 (408)
Q Consensus       158 ~~~~~~~~~--i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~  235 (408)
                      +..+|+...  |++.++++.+++.+++++|+||.+++++.++.|..+|....++.|+.+.+.+++++++++    .|+++
T Consensus        15 kq~gP~~~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~~t~~~~v~~~~~v~----~~~vv   90 (124)
T 2l4c_A           15 DGPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKFPGVSFGISTDSEVLTHYNIT----GNTIC   90 (124)
T ss_dssp             CCSCCSCCCEECCSHHHHHHHHHTSSEEEEEECSCTTSTHHHHHHHHHHHCTTSEEEEECCHHHHHHTTCC----SSCEE
T ss_pred             hccCCCCcceEcCCHHHHHHHHhcCCCEEEEEECCCCChhHHHHHHHHHhCCCceEEEEChHHHHHHcCCC----CCeEE
Confidence            556777655  999999999999999999999999999999999999943499999999999999999998    49999


Q ss_pred             EeecCCCcccccCC----cCCHHHHHHHHhcCC
Q 015368          236 FLHLEAGKATPFRH----QFTRLAIANFVTHTK  264 (408)
Q Consensus       236 ~~~~~~~~~~~y~g----~~~~~~i~~fi~~~~  264 (408)
                      +|++.++....|.|    +++.++|.+||..++
T Consensus        91 lfkkfde~~~~~~g~~~~~~~~~~L~~FI~~n~  123 (124)
T 2l4c_A           91 LFRLVDNEQLNLEDEDIESIDATKLSRFIEINS  123 (124)
T ss_dssp             EEETTTTEEEEECHHHHTTCCHHHHHHHHHHHC
T ss_pred             EEEcCCCCceeecCcccCCCCHHHHHHHHHHhc
Confidence            99998778888986    789999999998765

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.27  E-value=1e-11  Score=101.63  Aligned_cols=101  Identities=12%  Similarity=0.165  Sum_probs=75.9

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc--------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--------------------  115 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--------------------  115 (408)
                      +...+++.+...-..+++++|.||+ +||++|..++|.+.++++++++ ++.++.|++|.                    
T Consensus        20 l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d   99 (163)
T 3gkn_A           20 LSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSD   99 (163)
T ss_dssp             EECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEEC
T ss_pred             ccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEEC
Confidence            3334444443222357899999998 9999999999999999999976 79999998863                    


Q ss_pred             -cHhHHHHcCCCc------------CcEEEEEe-CCeEeEEeeCCCC---HHHHHHHHHh
Q 015368          116 -EKDLAKEYNILA------------YPTLYLFV-AGVRQFQFFGERT---RDVISAWVRE  158 (408)
Q Consensus       116 -~~~~~~~~~i~~------------~Pt~~~~~-~g~~~~~~~g~~~---~~~l~~~i~~  158 (408)
                       +.++++.|++..            .|++++++ +|+++..+.|...   .+++.+.+++
T Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~  159 (163)
T 3gkn_A          100 GDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKA  159 (163)
T ss_dssp             TTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHH
T ss_pred             CcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHH
Confidence             235678899887            99999998 9988888865433   3555555544

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.26  E-value=1e-11  Score=92.39  Aligned_cols=80  Identities=13%  Similarity=0.146  Sum_probs=66.7

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--ccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTR  149 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~  149 (408)
                      ...+.++.||++||++|+.+.|.++++++    ++.|..||++  ++++++++|| .++|++  +.+|+..  ..|..+.
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~----~i~~~~vdi~~~~~~el~~~~g-~~vP~l--~~~g~~~--~~~g~~~   84 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKD----RFILQEVDITLPENSTWYERYK-FDIPVF--HLNGQFL--MMHRVNT   84 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSS----SSEEEEEETTSSTTHHHHHHSS-SSCSEE--EESSSEE--EESSCCH
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhh----CCeEEEEECCCcchHHHHHHHC-CCCCEE--EECCEEE--EecCCCH
Confidence            34678999999999999999999887643    4899999999  7899999999 999976  4578554  4567899


Q ss_pred             HHHHHHHHhHh
Q 015368          150 DVISAWVREKM  160 (408)
Q Consensus       150 ~~l~~~i~~~~  160 (408)
                      +.|.++|.+.+
T Consensus        85 ~~l~~~l~~~~   95 (100)
T 1wjk_A           85 SKLEKQLRKLS   95 (100)
T ss_dssp             HHHHHHHHSSS
T ss_pred             HHHHHHHHHHH
Confidence            99999998665

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.25  E-value=1.1e-11  Score=106.93  Aligned_cols=87  Identities=11%  Similarity=0.353  Sum_probs=72.9

Q ss_pred             CCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      .+|+++|.||+ +||++|+.++|.+.++++++++ ++.++.|++|.                            +..+++
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~  147 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISK  147 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHH
Confidence            67999999997 9999999999999999999987 69999999874                            235778


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeCCC----CHHHHHHHHHh
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFGER----TRDVISAWVRE  158 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~i~~  158 (408)
                      .|++.      ++|++++++ +|+++..+.|..    ..+++.+.|+.
T Consensus       148 ~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~  195 (222)
T 3ztl_A          148 AYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDA  195 (222)
T ss_dssp             HTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             HcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence            89998      899999998 998888887753    45666666653

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.24  E-value=1.2e-11  Score=102.55  Aligned_cols=84  Identities=11%  Similarity=0.144  Sum_probs=67.4

Q ss_pred             CCCcEEEEEecCC-ChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc----------------------cHhHHHHcCCCcC
Q 015368           72 KNRNVMVMFYANW-CYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----------------------EKDLAKEYNILAY  128 (408)
Q Consensus        72 ~~~~~~v~f~a~w-C~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----------------------~~~~~~~~~i~~~  128 (408)
                      .+++++|+||++| |++|+.++|.+.+++++  .++.++.|+.|.                      +..+++.|++...
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~  120 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIA  120 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBC
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccc
Confidence            6789999999999 99999999999999988  579999998872                      2467889999887


Q ss_pred             ---------cEEEEEe-CCeEeEEeeC--CCCHHHHHHHHH
Q 015368          129 ---------PTLYLFV-AGVRQFQFFG--ERTRDVISAWVR  157 (408)
Q Consensus       129 ---------Pt~~~~~-~g~~~~~~~g--~~~~~~l~~~i~  157 (408)
                               |++++++ +|+++..+.|  .....++.++++
T Consensus       121 ~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~~~l~  161 (175)
T 1xvq_A          121 DGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALA  161 (175)
T ss_dssp             SSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHH
T ss_pred             ccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHHHHHH
Confidence                     8999998 9988888864  223334444443

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.24  E-value=1.8e-11  Score=103.93  Aligned_cols=102  Identities=10%  Similarity=-0.014  Sum_probs=77.6

Q ss_pred             cEEcC-hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-----------cHhHHH---
Q 015368           58 VVSLN-GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-----------EKDLAK---  121 (408)
Q Consensus        58 ~~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-----------~~~~~~---  121 (408)
                      +.+++ ++.+...-.++|+++|+|||+||++| .++|.+.+++++|++ ++.++.|+|+.           ..++++   
T Consensus        22 l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~~i~~f~~~~~  100 (207)
T 2r37_A           22 ALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVR  100 (207)
T ss_dssp             EEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHHHHHHHHHHTS
T ss_pred             eeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHHHHHHHHHhcc
Confidence            34444 44443223478999999999999999 789999999999976 79999998752           123455   


Q ss_pred             ---HcCCC-------------------------------------------------cCcEEEEEe-CCeEeEEeeCCCC
Q 015368          122 ---EYNIL-------------------------------------------------AYPTLYLFV-AGVRQFQFFGERT  148 (408)
Q Consensus       122 ---~~~i~-------------------------------------------------~~Pt~~~~~-~g~~~~~~~g~~~  148 (408)
                         ++++.                                                 ..|+.++++ +|+++.+|.|..+
T Consensus       101 ~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~i~~~~~g~~~  180 (207)
T 2r37_A          101 PGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTT  180 (207)
T ss_dssp             SCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSCEEEEECTTSC
T ss_pred             hhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCcEEEEECCCCC
Confidence               55431                                                 016889998 9999999999999


Q ss_pred             HHHHHHHHHhHh
Q 015368          149 RDVISAWVREKM  160 (408)
Q Consensus       149 ~~~l~~~i~~~~  160 (408)
                      .+++.+.|++.+
T Consensus       181 ~~~l~~~I~~ll  192 (207)
T 2r37_A          181 VSNVKMDILSYM  192 (207)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999888776

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.23  E-value=4.5e-12  Score=103.05  Aligned_cols=109  Identities=17%  Similarity=0.249  Sum_probs=72.6

Q ss_pred             CCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------
Q 015368           47 NHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------  115 (408)
Q Consensus        47 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------  115 (408)
                      |..+|.+   .+.+.+++.++..-.++|+++|.|| ++||++|..++|.+.++++++++ ++.++.|+.|.         
T Consensus         7 G~~aPdF---~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~   83 (157)
T 4g2e_A            7 GELAPDF---ELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKE   83 (157)
T ss_dssp             TSBCCCC---EEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHH
T ss_pred             CCCCcCe---EeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHH
Confidence            4445544   2334444444322236899999999 99999999999999999998876 88999888764         


Q ss_pred             ------------cHhHHHHcCCC-----------cCcEEEEEe-CCeEeEEeeC-----CCCHHHHHHHHHh
Q 015368          116 ------------EKDLAKEYNIL-----------AYPTLYLFV-AGVRQFQFFG-----ERTRDVISAWVRE  158 (408)
Q Consensus       116 ------------~~~~~~~~~i~-----------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~l~~~i~~  158 (408)
                                  +.+++++||+.           ..|++++++ +|++...+.|     ..+.+++.+.|+.
T Consensus        84 ~~~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~  155 (157)
T 4g2e_A           84 HNKLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKS  155 (157)
T ss_dssp             HTTCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHH
T ss_pred             HcCCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence                        23567788874           468899998 8987766643     3467778777753

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.23  E-value=5.8e-11  Score=115.66  Aligned_cols=96  Identities=15%  Similarity=0.130  Sum_probs=82.4

Q ss_pred             EEcChhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC
Q 015368           59 VSLNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG  137 (408)
Q Consensus        59 ~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g  137 (408)
                      ..++++.++.+.. .+++.++.||++||++|+.+.|.+++++..+. ++.+..||.+++++++++|+|.++|++++  +|
T Consensus       102 ~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-~v~~~~vd~~~~~~~~~~~~i~svPt~~i--~g  178 (521)
T 1hyu_A          102 SKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAVFV--NG  178 (521)
T ss_dssp             CCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TT
T ss_pred             CCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-ceEEEEEechhhHHHHHHhCCCccCEEEE--CC
Confidence            4566777766653 45677999999999999999999999999887 89999999999999999999999999977  88


Q ss_pred             eEeEEeeCCCCHHHHHHHHHhH
Q 015368          138 VRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       138 ~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                      +.+..  |..+.++|.+|+.+.
T Consensus       179 ~~~~~--G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          179 KEFGQ--GRMTLTEIVAKVDTG  198 (521)
T ss_dssp             EEEEE--SCCCHHHHHHHHCCS
T ss_pred             EEEec--CCCCHHHHHHHHhhc
Confidence            76544  999999999998654

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.21  E-value=8.7e-12  Score=88.79  Aligned_cols=63  Identities=17%  Similarity=0.183  Sum_probs=51.2

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-ccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-LEKDLAKEYNILAYPTLYLFVAGVRQ  140 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-~~~~~~~~~~i~~~Pt~~~~~~g~~~  140 (408)
                      .++.||++||++|+.+.|.++++.++++..+.++.||.+ ++.+++++||++++|++++  +|+.+
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~gv~~vPt~~i--~g~~~   66 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALVI--DGAAF   66 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHHHHHTCCEEEEEEE--TTEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHcCCCcCCEEEE--CCEEE
Confidence            367899999999999999999988776445566666654 5788999999999999877  88643

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.18  E-value=1.3e-11  Score=100.97  Aligned_cols=111  Identities=14%  Similarity=0.257  Sum_probs=82.1

Q ss_pred             CCCCCCccCCCcEEcChhh--HHHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------
Q 015368           47 NHTWPLLYAKDVVSLNGKN--FSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------  115 (408)
Q Consensus        47 ~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------  115 (408)
                      |..+|++   .+.+.+++.  +.+...++|++++.|| ++||++|..++|.+.++++++++ ++.++.|+.|.       
T Consensus         8 G~~aPdF---~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~   84 (164)
T 4gqc_A            8 GEKAPDF---TLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKF   84 (164)
T ss_dssp             TSBCCCC---EEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHH
T ss_pred             CCCCcCc---EeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHH
Confidence            4455544   344455543  3455568899999998 99999999999999999999877 79999998753       


Q ss_pred             --------------cHhHHHHcCCC----------cCcEEEEEe-CCeEeEEeeC-----CCCHHHHHHHHHhHh
Q 015368          116 --------------EKDLAKEYNIL----------AYPTLYLFV-AGVRQFQFFG-----ERTRDVISAWVREKM  160 (408)
Q Consensus       116 --------------~~~~~~~~~i~----------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~l~~~i~~~~  160 (408)
                                    +.++++.||+.          ..|++++++ +|++...+.+     ..+.+++.+.+++..
T Consensus        85 ~~~~~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~  159 (164)
T 4gqc_A           85 KDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIA  159 (164)
T ss_dssp             HHHTTCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHHH
T ss_pred             HHhcCcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHh
Confidence                          34577888874          368899998 9987776654     346778877776654

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.18  E-value=4.7e-11  Score=102.48  Aligned_cols=89  Identities=19%  Similarity=0.344  Sum_probs=73.1

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc----------------------------HhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~  121 (408)
                      ++|+++|+|| ++||++|..++|.+.++++++++ ++.++.|++|..                            ..+++
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  134 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDISK  134 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHHH
Confidence            6789999999 99999999999999999999964 788888887531                            24567


Q ss_pred             HcCC-----CcCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhHh
Q 015368          122 EYNI-----LAYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREKM  160 (408)
Q Consensus       122 ~~~i-----~~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~~  160 (408)
                      .|++     ...|++++++ +|+++..+.|.    .+.+++.+.|++..
T Consensus       135 ~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          135 NYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             HTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            7888     3689999998 89888887663    56788888887654

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.18  E-value=7.9e-11  Score=84.84  Aligned_cols=76  Identities=21%  Similarity=0.295  Sum_probs=62.2

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH----hHHHHcC--CCcCcEEEEEeCCeEeEEeeCCCCH
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYN--ILAYPTLYLFVAGVRQFQFFGERTR  149 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~--i~~~Pt~~~~~~g~~~~~~~g~~~~  149 (408)
                      -++.||++||++|+.+.+.+++++++++ ++.+..+|+++++    +++++++  +.++|++  +.+|+.+.   |   .
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~---~   72 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERD-DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---G---Y   72 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHS-SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---S---S
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCC-CceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---C---H
Confidence            3678999999999999999999998876 6999999998764    7999999  9999998  34785542   3   2


Q ss_pred             HHHHHHHHhHh
Q 015368          150 DVISAWVREKM  160 (408)
Q Consensus       150 ~~l~~~i~~~~  160 (408)
                      +++.+++++.+
T Consensus        73 ~~l~~~~~~~~   83 (85)
T 1ego_A           73 TDFAAWVKENL   83 (85)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            68888887754

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.17  E-value=1.4e-10  Score=95.45  Aligned_cols=105  Identities=9%  Similarity=-0.023  Sum_probs=79.1

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhc---CCcEEEEEeCcc------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLK---GEADLVMVDAYL------------------  115 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~---~~v~~~~v~~~~------------------  115 (408)
                      +.+.+++.++..-..+|+++|+||++||+ .|..++|.+.+++++++   .++.++.|.+|.                  
T Consensus        13 l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~   92 (170)
T 3me7_A           13 LVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDG   92 (170)
T ss_dssp             EEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCS
T ss_pred             EEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence            34444444432223589999999999997 69999999999999995   368888888751                  


Q ss_pred             -------------cHhHHHHcCC---------CcCcEEEEEe-CCeEeEEeeCC-CCHHHHHHHHHhHhCC
Q 015368          116 -------------EKDLAKEYNI---------LAYPTLYLFV-AGVRQFQFFGE-RTRDVISAWVREKMTL  162 (408)
Q Consensus       116 -------------~~~~~~~~~i---------~~~Pt~~~~~-~g~~~~~~~g~-~~~~~l~~~i~~~~~~  162 (408)
                                   ...+++.||+         ...|++++++ +|+++..+.|. .+.+++.+.|.+....
T Consensus        93 ~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~~~~  163 (170)
T 3me7_A           93 KGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLARGE  163 (170)
T ss_dssp             SSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHHTTC
T ss_pred             CCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHhhcc
Confidence                         1235566553         3568899998 99888888886 7899999999888754

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.16  E-value=9.1e-11  Score=95.51  Aligned_cols=77  Identities=18%  Similarity=0.162  Sum_probs=62.8

Q ss_pred             CCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------cHhHHHHcCCCcCc
Q 015368           73 NRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------EKDLAKEYNILAYP  129 (408)
Q Consensus        73 ~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------~~~~~~~~~i~~~P  129 (408)
                      +++++|+|| ++||++|..++|.+.++++++++ + .++.|+++.                     +.++++.||+...|
T Consensus        35 ~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p  113 (159)
T 2a4v_A           35 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTP  113 (159)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSS
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence            347999987 99999999999999999999976 6 888888753                     34578889999998


Q ss_pred             -------EEEEEeCCeEeEEeeCCCCHHH
Q 015368          130 -------TLYLFVAGVRQFQFFGERTRDV  151 (408)
Q Consensus       130 -------t~~~~~~g~~~~~~~g~~~~~~  151 (408)
                             ++++ .+|++...+.|......
T Consensus       114 ~~g~~~~~~li-~~G~i~~~~~g~~~~~~  141 (159)
T 2a4v_A          114 LSGSIRSHFIF-VDGKLKFKRVKISPEVS  141 (159)
T ss_dssp             SSCBCCEEEEE-ETTEEEEEEESCCHHHH
T ss_pred             cCCccceEEEE-cCCEEEEEEccCCcccc
Confidence                   5555 99998888988765433

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.16  E-value=1.4e-10  Score=97.05  Aligned_cols=89  Identities=13%  Similarity=0.185  Sum_probs=72.4

Q ss_pred             CCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc-------------------------HhHHHHcC
Q 015368           72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-------------------------KDLAKEYN  124 (408)
Q Consensus        72 ~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~-------------------------~~~~~~~~  124 (408)
                      .+++++|+||+ +||++|..++|.+.++++++++ ++.++.|+++..                         ..+++.||
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  108 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHHHHhC
Confidence            57899999995 9999999999999999999875 789998887632                         23566677


Q ss_pred             CC------cCcEEEEEe-CCeEeEEeeCCC----CHHHHHHHHHhHh
Q 015368          125 IL------AYPTLYLFV-AGVRQFQFFGER----TRDVISAWVREKM  160 (408)
Q Consensus       125 i~------~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~i~~~~  160 (408)
                      +.      ..|++++++ +|++...+.|..    +.+++.+.|++..
T Consensus       109 v~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l~  155 (186)
T 1n8j_A          109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            76      369999998 998888887754    5788888887654

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.14  E-value=1.3e-10  Score=94.94  Aligned_cols=99  Identities=8%  Similarity=0.066  Sum_probs=72.9

Q ss_pred             EEcChhhHHHHHcCCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc----------------------
Q 015368           59 VSLNGKNFSEFMGKNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----------------------  115 (408)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----------------------  115 (408)
                      ...+++.++..-..+|+++|+||+ +||++|..++|.+.++++++ .++.++.|++|.                      
T Consensus        28 ~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~  106 (163)
T 1psq_A           28 TTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-DNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDY  106 (163)
T ss_dssp             ECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECT
T ss_pred             EcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-CCcEEEEEECCCHHHHHHHHHhcCCCCcEEecCC
Confidence            334444433222367899999995 99999999999999999988 678888887653                      


Q ss_pred             -cHhHHHHcCCC----cC--cEEEEEe-CCeEeEEeeCC-----CCHHHHHHHHHh
Q 015368          116 -EKDLAKEYNIL----AY--PTLYLFV-AGVRQFQFFGE-----RTRDVISAWVRE  158 (408)
Q Consensus       116 -~~~~~~~~~i~----~~--Pt~~~~~-~g~~~~~~~g~-----~~~~~l~~~i~~  158 (408)
                       +..+++.|++.    ++  |++++++ +|+++..+.|.     .+.+++.+.|++
T Consensus       107 ~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~  162 (163)
T 1psq_A          107 FDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHH
T ss_pred             chhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHh
Confidence             23466777776    33  9999998 99888888763     334677776653

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.12  E-value=2.1e-10  Score=95.34  Aligned_cols=102  Identities=11%  Similarity=0.054  Sum_probs=77.2

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------  115 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------  115 (408)
                      .+.+.+++.+...-..+|+++|.|| ++||++|..++|.+.++++++++ ++.++.|++|.                   
T Consensus        35 ~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~  114 (179)
T 3ixr_A           35 PLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVS  114 (179)
T ss_dssp             CEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEE
T ss_pred             eEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEE
Confidence            4556666655533346789999998 99999999999999999999977 78999998864                   


Q ss_pred             --cHhHHHHcCCCc------------CcEEEEEe-CCeEeEEeeCCC---CHHHHHHHHHh
Q 015368          116 --EKDLAKEYNILA------------YPTLYLFV-AGVRQFQFFGER---TRDVISAWVRE  158 (408)
Q Consensus       116 --~~~~~~~~~i~~------------~Pt~~~~~-~g~~~~~~~g~~---~~~~l~~~i~~  158 (408)
                        +.++++.|++..            .|++++++ +|+++..+.|..   ..+++.+.|++
T Consensus       115 D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~  175 (179)
T 3ixr_A          115 DSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKA  175 (179)
T ss_dssp             CTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHH
T ss_pred             CCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence              235678888854            58899998 998887776543   34555555554

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.11  E-value=1.4e-10  Score=98.95  Aligned_cols=89  Identities=12%  Similarity=0.308  Sum_probs=73.1

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc----------------------------HhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~  121 (408)
                      .+|+++|+|| ++||++|..++|.+.++++++++ ++.++.|++|..                            ..+++
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~  126 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  126 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHHH
Confidence            5789999999 99999999999999999999976 799998887532                            24567


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhHh
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREKM  160 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~~  160 (408)
                      .|++.      .+|++++++ +|+++..+.|.    .+.+++.+.|+...
T Consensus       127 ~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          127 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            78884      699999998 89888877664    46788888877654

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=99.09  E-value=2.3e-10  Score=98.04  Aligned_cols=82  Identities=13%  Similarity=0.246  Sum_probs=64.0

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEe---------------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD---------------------------------------  112 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~---------------------------------------  112 (408)
                      +++++++.||++||++|++++|.++++.+.   ++.+..+.                                       
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~---~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~  161 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  161 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChh
Confidence            457899999999999999999999998763   34444332                                       


Q ss_pred             -C----cccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          113 -A----YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       113 -~----~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                       |    +++.++++++||+++||+ ++.+|.   .+.|..+.+.|.++|.+..
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gtPt~-v~~dG~---~~~G~~~~~~l~~~l~~~~  210 (216)
T 1eej_A          162 SCDVDIADHYALGVQLGVSGTPAV-VLSNGT---LVPGYQPPKEMKEFLDEHQ  210 (216)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEE-ECTTSC---EEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCccCEE-EEcCCe---EecCCCCHHHHHHHHHHhh
Confidence             1    234568899999999998 566783   5689999999999997653

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.09  E-value=2.2e-10  Score=99.61  Aligned_cols=88  Identities=14%  Similarity=0.313  Sum_probs=72.4

Q ss_pred             CCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc----------------------------HhHHH
Q 015368           72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~  121 (408)
                      .+++++|+||+ +||++|..++|.+.++++++++ ++.++.|++|..                            .++++
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~  155 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQISK  155 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHHH
Confidence            67899999999 9999999999999999999986 799999987642                            24678


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHhH
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK  159 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~  159 (408)
                      .||+.      .+|++++++ +|++...+.|    ..+.+++.+.|+..
T Consensus       156 ~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          156 DYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            88887      689999998 9988777665    34567777777554

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.07  E-value=6.3e-10  Score=92.05  Aligned_cols=83  Identities=13%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC--------------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--------------------------------------  113 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~--------------------------------------  113 (408)
                      .++++++.||++||++|+.+.|.+.++.+++++ +.+...+.                                      
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~~   99 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN-VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKAN   99 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC-EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCCC
Confidence            467899999999999999999999999998775 55544442                                      


Q ss_pred             -------------------------------cccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          114 -------------------------------YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       114 -------------------------------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                                     +.+..+++++||.|+||+++  +|+   .+.|..+.+.+.+.|.+.+
T Consensus       100 ~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~i--~g~---~~~G~~~~~~l~~~i~~~l  172 (175)
T 3gyk_A          100 ETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLGFNGTPSFVV--EDA---LVPGFVEQSQLQDAVDRAR  172 (175)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTE---EECSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCccCCEEEE--CCE---EeeCCCCHHHHHHHHHHHH
Confidence                                           22345678899999999987  773   6679999999999998765

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.06  E-value=2.9e-10  Score=98.74  Aligned_cols=94  Identities=15%  Similarity=0.186  Sum_probs=75.9

Q ss_pred             HHHHcCCCc-EEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------------cH
Q 015368           67 SEFMGKNRN-VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EK  117 (408)
Q Consensus        67 ~~~~~~~~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~  117 (408)
                      .+.+..++. +|+.||++||++|..++|.+.++++++++ ++.++.|++|.                           +.
T Consensus        27 ~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~  106 (249)
T 3a2v_A           27 DHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQG  106 (249)
T ss_dssp             HHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTS
T ss_pred             HHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCch
Confidence            334435675 56689999999999999999999999976 79999999864                           23


Q ss_pred             hHHHHcCCC-------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhHh
Q 015368          118 DLAKEYNIL-------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREKM  160 (408)
Q Consensus       118 ~~~~~~~i~-------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~~  160 (408)
                      .+++.||+.       ++|++++++ +|++...+.|.    ++.+++.+.|+...
T Consensus       107 ~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          107 TVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK  161 (249)
T ss_dssp             HHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHHH
Confidence            578889987       899999998 99887777665    47888888887654

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.06  E-value=2.1e-10  Score=94.52  Aligned_cols=86  Identities=15%  Similarity=0.186  Sum_probs=67.9

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-----------------------cHhHHHHcCCCc
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------------------EKDLAKEYNILA  127 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-----------------------~~~~~~~~~i~~  127 (408)
                      .+++++|.|| ++||++|..++|.+.++++++ .++.++.|++|.                       +..+ +.|++..
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~  123 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-EGVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM-EKYGVLI  123 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-TTEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG-GGGTCBB
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-CCceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH-HHhCCEe
Confidence            5789999999 899999999999999999988 678888887753                       2335 6666642


Q ss_pred             ---------CcEEEEEe-CCeEeEEeeC-----CCCHHHHHHHHHhH
Q 015368          128 ---------YPTLYLFV-AGVRQFQFFG-----ERTRDVISAWVREK  159 (408)
Q Consensus       128 ---------~Pt~~~~~-~g~~~~~~~g-----~~~~~~l~~~i~~~  159 (408)
                               .|++++++ +|++...+.|     ..+.+++.+.|++.
T Consensus       124 ~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          124 GEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             cccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence                     59999998 9988888864     34567787777653

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.05  E-value=3.5e-10  Score=92.74  Aligned_cols=108  Identities=9%  Similarity=0.058  Sum_probs=75.9

Q ss_pred             CCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc---------
Q 015368           46 NNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---------  115 (408)
Q Consensus        46 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~---------  115 (408)
                      .|...|.+   .+.+++++.+...-..+++++|+|| ++||++|..++|.+.+++++  .++.++.|++|.         
T Consensus        22 ~G~~aP~f---~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~--~~~~vv~is~d~~~~~~~~~~   96 (166)
T 3p7x_A           22 EGDFAPDF---TVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK--EEGIVLTISADLPFAQKRWCA   96 (166)
T ss_dssp             TTSBCCCC---EEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT--TTSEEEEEESSCHHHHHHHHH
T ss_pred             CCCCCCCe---EEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc--CCCEEEEEECCCHHHHHHHHH
Confidence            33444443   3344445444322236789999999 78999999999999999887  578888888653         


Q ss_pred             --------------cHhHHHHcCCCc------CcEEEEEe-CCeEeEEeeC-----CCCHHHHHHHHHh
Q 015368          116 --------------EKDLAKEYNILA------YPTLYLFV-AGVRQFQFFG-----ERTRDVISAWVRE  158 (408)
Q Consensus       116 --------------~~~~~~~~~i~~------~Pt~~~~~-~g~~~~~~~g-----~~~~~~l~~~i~~  158 (408)
                                    +.++++.||+..      .|++++++ +|+++..+.+     ..+.+++.+.|++
T Consensus        97 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~  165 (166)
T 3p7x_A           97 SAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKN  165 (166)
T ss_dssp             HHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHT
T ss_pred             HcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhc
Confidence                          235667788775      89999998 9988777543     3456777766653

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.04  E-value=4.3e-10  Score=92.06  Aligned_cols=85  Identities=7%  Similarity=-0.031  Sum_probs=65.4

Q ss_pred             EcChhhHHHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-----------------------
Q 015368           60 SLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-----------------------  115 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-----------------------  115 (408)
                      ..+++.+...-..+++++|+|| ++||++|..++|.+.++++++ .++.++.|++|.                       
T Consensus        30 ~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~  108 (165)
T 1q98_A           30 GNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-SNTIVLCISADLPFAQARFCGAEGIENAKTVSTFR  108 (165)
T ss_dssp             CTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-TTEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTT
T ss_pred             CCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccc
Confidence            3444433322236789999999 899999999999999999998 678888887642                       


Q ss_pred             cHhHHHHcCCCc---------CcEEEEEe-CCeEeEEeeC
Q 015368          116 EKDLAKEYNILA---------YPTLYLFV-AGVRQFQFFG  145 (408)
Q Consensus       116 ~~~~~~~~~i~~---------~Pt~~~~~-~g~~~~~~~g  145 (408)
                      +..+++.|++..         .|++++++ +|+++..+.|
T Consensus       109 ~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~  148 (165)
T 1q98_A          109 NHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLV  148 (165)
T ss_dssp             CTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred             cchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeC
Confidence            345778888853         49999998 9988888865

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.04  E-value=6.1e-10  Score=91.17  Aligned_cols=75  Identities=11%  Similarity=0.056  Sum_probs=60.3

Q ss_pred             CCCcEEEEEe-cCCChhHHh-hhHHHHHHHHHhcC-Cc-EEEEEeCcc-----------------------cHhHHHHcC
Q 015368           72 KNRNVMVMFY-ANWCYWSKK-LAPEFAAAAKMLKG-EA-DLVMVDAYL-----------------------EKDLAKEYN  124 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~-~~p~~~~~~~~~~~-~v-~~~~v~~~~-----------------------~~~~~~~~~  124 (408)
                      ++++++|.|| ++||++|.. ++|.+.++++++++ ++ .++.|+.+.                       +.++++.||
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~~g  109 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFTKAVD  109 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHHHHcC
Confidence            5778888886 999999999 99999999999865 79 999998753                       234667788


Q ss_pred             CCcC-----------cEEEEEeCCeEeEEeeCC
Q 015368          125 ILAY-----------PTLYLFVAGVRQFQFFGE  146 (408)
Q Consensus       125 i~~~-----------Pt~~~~~~g~~~~~~~g~  146 (408)
                      +...           |+++++++|++...+.+.
T Consensus       110 v~~~~~~~~g~~~~~p~t~lI~~G~I~~~~~~~  142 (167)
T 2wfc_A          110 MELDLSAVLGNVRSKRYSLVIEDGVVTKVNVEP  142 (167)
T ss_dssp             CEECCHHHHSSCEECCEEEEEETTEEEEEEECT
T ss_pred             CccccccccCcccceEEEEEEeCCEEEEEEecC
Confidence            7653           888888999887777654

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.01  E-value=1.1e-09  Score=90.88  Aligned_cols=86  Identities=14%  Similarity=0.101  Sum_probs=63.7

Q ss_pred             CCC-cEEEEEecCCChhHHh-hhHHHHHHHHHhcC-CcE-EEEEeCcc-----------------------cHhHHHHcC
Q 015368           72 KNR-NVMVMFYANWCYWSKK-LAPEFAAAAKMLKG-EAD-LVMVDAYL-----------------------EKDLAKEYN  124 (408)
Q Consensus        72 ~~~-~~~v~f~a~wC~~C~~-~~p~~~~~~~~~~~-~v~-~~~v~~~~-----------------------~~~~~~~~~  124 (408)
                      +++ ++++.||++||++|.. ++|.+.++++++++ ++. ++.|+.+.                       +.++++.||
T Consensus        55 ~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yG  134 (184)
T 3uma_A           55 KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFTKAIG  134 (184)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHHHHcC
Confidence            456 4566677999999999 79999999999976 788 88888764                       234677888


Q ss_pred             CC-----------cCcEEEEEeCCeEeEEeeCC----CCHHHHHHHHH
Q 015368          125 IL-----------AYPTLYLFVAGVRQFQFFGE----RTRDVISAWVR  157 (408)
Q Consensus       125 i~-----------~~Pt~~~~~~g~~~~~~~g~----~~~~~l~~~i~  157 (408)
                      +.           ..|+++++++|++...+.|.    .+...+.+.++
T Consensus       135 v~~~~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~  182 (184)
T 3uma_A          135 MEIDLSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLE  182 (184)
T ss_dssp             CEEEEGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHH
T ss_pred             CceeccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHh
Confidence            75           35778888999888877653    33444444443

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.99  E-value=4.5e-10  Score=98.28  Aligned_cols=87  Identities=13%  Similarity=0.318  Sum_probs=70.8

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc----------------------------HhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~  121 (408)
                      .+|+++|+|| ++||++|..++|.+.++++++++ ++.++.|++|..                            ..+++
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~  169 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISK  169 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHHH
Confidence            6789999999 99999999999999999999976 799999988642                            24677


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHh
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVRE  158 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~  158 (408)
                      .||+.      .+|++++++ +|++...+.+    ..+.+++.+.|+.
T Consensus       170 ~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          170 DYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             HcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHh
Confidence            78875      579999998 9988777765    3456777776654

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.99  E-value=2.3e-09  Score=88.05  Aligned_cols=104  Identities=15%  Similarity=0.202  Sum_probs=73.9

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhcC---CcEEEEEeCccc---H----hHHHHcC-
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG---EADLVMVDAYLE---K----DLAKEYN-  124 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~---~----~~~~~~~-  124 (408)
                      .+.+.+++.++..-.+||+++|+||++||+ +|...++.+.++.+.++.   ++.++.|.+|..   +    +.+++|+ 
T Consensus        16 ~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~~~   95 (170)
T 4hde_A           16 QFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKFTE   95 (170)
T ss_dssp             EEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTTCS
T ss_pred             EEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHcCC
Confidence            455566665554444789999999999997 799999999998887743   788888887632   1    1222222 


Q ss_pred             -----------------------------------CCcCcEEEEEe-CCeEeEEeeCC--CCHHHHHHHHHhHh
Q 015368          125 -----------------------------------ILAYPTLYLFV-AGVRQFQFFGE--RTRDVISAWVREKM  160 (408)
Q Consensus       125 -----------------------------------i~~~Pt~~~~~-~g~~~~~~~g~--~~~~~l~~~i~~~~  160 (408)
                                                         +...|++++++ +|+++..|.|.  ...+.+.+-|++.+
T Consensus        96 ~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~~ik~Ll  169 (170)
T 4hde_A           96 DTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPYEDIIRDMKRLA  169 (170)
T ss_dssp             CCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred             CCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCHHHHHHHHHHHh
Confidence                                               22347889998 99888889874  45677877776554

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=98.99  E-value=1.5e-09  Score=88.58  Aligned_cols=75  Identities=11%  Similarity=0.045  Sum_probs=61.8

Q ss_pred             CCCcEEEEEe-cCCChhHH-hhhHHHHHHHHHhcC-CcE-EEEEeCcc-----------------------cHhHHHHcC
Q 015368           72 KNRNVMVMFY-ANWCYWSK-KLAPEFAAAAKMLKG-EAD-LVMVDAYL-----------------------EKDLAKEYN  124 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~-~~~p~~~~~~~~~~~-~v~-~~~v~~~~-----------------------~~~~~~~~~  124 (408)
                      ++|+++|+|| ++||++|. .++|.+.++++++++ ++. ++.|+.+.                       +.++++.||
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g  113 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALG  113 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHHHHcC
Confidence            6789999999 89999999 999999999999864 788 88887653                       234677888


Q ss_pred             CC------c-----CcEEEEEeCCeEeEEeeCC
Q 015368          125 IL------A-----YPTLYLFVAGVRQFQFFGE  146 (408)
Q Consensus       125 i~------~-----~Pt~~~~~~g~~~~~~~g~  146 (408)
                      +.      +     .|+++++++|++...+.|.
T Consensus       114 v~~~~~~~g~~~~~~p~~~vid~G~i~~~~~~~  146 (162)
T 1tp9_A          114 LELDLQEKGLGTRSRRFALLVDDLKVKAANIEG  146 (162)
T ss_dssp             CEEEETTTTSEEEECCEEEEEETTEEEEEEECS
T ss_pred             cccccccCCCCccceeEEEEEECCEEEEEEeeC
Confidence            76      2     7999999999887777765

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.98  E-value=1.5e-09  Score=89.28  Aligned_cols=98  Identities=13%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             EcChhhHHHHH-cCCCcEEE-EEecCCChhHH-hhhHHHHHHHHHhcC-CcEEEE-EeCcc-------------------
Q 015368           60 SLNGKNFSEFM-GKNRNVMV-MFYANWCYWSK-KLAPEFAAAAKMLKG-EADLVM-VDAYL-------------------  115 (408)
Q Consensus        60 ~l~~~~~~~~~-~~~~~~~v-~f~a~wC~~C~-~~~p~~~~~~~~~~~-~v~~~~-v~~~~-------------------  115 (408)
                      ..+++.++..- .++++++| .||++||++|. +++|.+.++++++++ ++.++. |..+.                   
T Consensus        29 ~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~  108 (173)
T 3mng_A           29 GEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRL  108 (173)
T ss_dssp             SSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEE
T ss_pred             CCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEE
Confidence            34455444222 25665555 55699999999 599999999999976 677775 77653                   


Q ss_pred             ----cHhHHHHcCCC-------------cCcEEEEEeCCeEeEEeeCC----CCHHHHHHHHH
Q 015368          116 ----EKDLAKEYNIL-------------AYPTLYLFVAGVRQFQFFGE----RTRDVISAWVR  157 (408)
Q Consensus       116 ----~~~~~~~~~i~-------------~~Pt~~~~~~g~~~~~~~g~----~~~~~l~~~i~  157 (408)
                          +.++++.||+.             ..|+++++++|++...+.++    ++..+..+.|.
T Consensus       109 l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~  171 (173)
T 3mng_A          109 LADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIIS  171 (173)
T ss_dssp             EECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHH
T ss_pred             EECCChHHHHHhCCCcccccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcchHHHHHHHH
Confidence                23577888875             35999999999887777664    34455554443

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.97  E-value=1.2e-09  Score=93.18  Aligned_cols=80  Identities=11%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC--------------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--------------------------------------  113 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~--------------------------------------  113 (408)
                      +++++++.||++||++|+++.|.++++.+.   ++.+..+..                                      
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~---~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~  161 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL---GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  161 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC---CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChH
Confidence            457899999999999999999999997653   344432211                                      


Q ss_pred             ------cccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHh
Q 015368          114 ------YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       114 ------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                            +++.++++++||+++||+++ .||+   .+.|..+.++|.++|.+
T Consensus       162 ~~~~~v~~~~~l~~~~gV~gTPt~vi-~nG~---~~~G~~~~~~l~~~l~~  208 (211)
T 1t3b_A          162 KTPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEE  208 (211)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCEEEE-eCCE---EecCCCCHHHHHHHHHh
Confidence                  13456788999999999987 7884   56899999999999875

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.97  E-value=1.8e-09  Score=91.24  Aligned_cols=97  Identities=7%  Similarity=0.014  Sum_probs=71.0

Q ss_pred             CCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc--------
Q 015368           45 NNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--------  115 (408)
Q Consensus        45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~--------  115 (408)
                      ..|...|.+   .+.+.+++.++..-..+|+++|+|| ++||++|..++|.+.++++++ .++.++.|++|.        
T Consensus        53 ~~G~~aPdf---~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~~v~vv~Is~D~~~~~~~~~  128 (200)
T 3zrd_A           53 QIGDKAKDF---TLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-ENTVVLCISSDLPFAQSRFC  128 (200)
T ss_dssp             CTTCBCCCC---EEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-TTEEEEEEESSCHHHHTTCT
T ss_pred             CCCCCCCCe---EEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-CCCEEEEEECCCHHHHHHHH
Confidence            344444543   3444555544432236899999999 689999999999999999999 678888888753        


Q ss_pred             ---------------cHhHHHHcCCC---------cCcEEEEEe-CCeEeEEeeC
Q 015368          116 ---------------EKDLAKEYNIL---------AYPTLYLFV-AGVRQFQFFG  145 (408)
Q Consensus       116 ---------------~~~~~~~~~i~---------~~Pt~~~~~-~g~~~~~~~g  145 (408)
                                     +.++++.||+.         ..|++++++ +|+++..+.+
T Consensus       129 ~~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~  183 (200)
T 3zrd_A          129 GAEGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELV  183 (200)
T ss_dssp             TTTTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEEC
T ss_pred             HHcCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEec
Confidence                           34567778875         269999998 9988777654

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.96  E-value=2.4e-09  Score=88.03  Aligned_cols=76  Identities=12%  Similarity=0.072  Sum_probs=56.7

Q ss_pred             cCCCcEEEEEecCCChhHHhh-hHHHHHHHHHhcC-CcE-EEEEeCccc-----------------------HhHHHHcC
Q 015368           71 GKNRNVMVMFYANWCYWSKKL-APEFAAAAKMLKG-EAD-LVMVDAYLE-----------------------KDLAKEYN  124 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~-~p~~~~~~~~~~~-~v~-~~~v~~~~~-----------------------~~~~~~~~  124 (408)
                      ..++++++.||++||++|..+ +|.+.++++++++ ++. ++.|+.+..                       ..+++.||
T Consensus        42 ~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~yg  121 (171)
T 2pwj_A           42 KDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLE  121 (171)
T ss_dssp             TTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHHHHHHT
T ss_pred             CCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceEEEECCccHHHHHhC
Confidence            333577889999999999999 9999999999865 788 888887531                       23556666


Q ss_pred             CCc-----------CcEEEEEeCCeEeEEeeCC
Q 015368          125 ILA-----------YPTLYLFVAGVRQFQFFGE  146 (408)
Q Consensus       125 i~~-----------~Pt~~~~~~g~~~~~~~g~  146 (408)
                      +..           .|+.+++++|++...+.|.
T Consensus       122 v~~~~~~~~~g~~~~~~t~~I~~G~I~~~~~~~  154 (171)
T 2pwj_A          122 LTTDLSAGLLGIRSERWSAYVVDGKVKALNVEE  154 (171)
T ss_dssp             CEEECTTTTCCEEECCEEEEEETTEEEEEEECS
T ss_pred             CccccccccCCcccceeEEEEECCEEEEEEeec
Confidence            642           3455666699887777764

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.87  E-value=3.9e-08  Score=75.60  Aligned_cols=95  Identities=14%  Similarity=0.192  Sum_probs=80.4

Q ss_pred             CcEEc-ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSL-NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      .+..| +.++++.++..+++++|-|+++||.+|   .+.|.++|+.+ +++.|+.++   ++++++++++. .|++++|+
T Consensus        22 ~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~d~~F~~t~---~~~v~~~~~v~-~~~vvlfk   93 (124)
T 2l4c_A           22 EPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPA---VPILHSMVQKF-PGVSFGIST---DSEVLTHYNIT-GNTICLFR   93 (124)
T ss_dssp             CCEECCSHHHHHHHHHTSSEEEEEECSCTTSTH---HHHHHHHHHHC-TTSEEEEEC---CHHHHHHTTCC-SSCEEEEE
T ss_pred             cceEcCCHHHHHHHHhcCCCEEEEEECCCCChh---HHHHHHHHHhC-CCceEEEEC---hHHHHHHcCCC-CCeEEEEE
Confidence            34445 457888888888999999999999998   67899999999 789999886   57899999999 79999999


Q ss_pred             CC-eEeEEeeC----CCCHHHHHHHHHhH
Q 015368          136 AG-VRQFQFFG----ERTRDVISAWVREK  159 (408)
Q Consensus       136 ~g-~~~~~~~g----~~~~~~l~~~i~~~  159 (408)
                      ++ .....|.|    ..+.+.|.+||..+
T Consensus        94 kfde~~~~~~g~~~~~~~~~~L~~FI~~n  122 (124)
T 2l4c_A           94 LVDNEQLNLEDEDIESIDATKLSRFIEIN  122 (124)
T ss_dssp             TTTTEEEEECHHHHTTCCHHHHHHHHHHH
T ss_pred             cCCCCceeecCcccCCCCHHHHHHHHHHh
Confidence            65 34567886    78999999999865

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.87  E-value=6.9e-09  Score=87.13  Aligned_cols=87  Identities=16%  Similarity=0.218  Sum_probs=69.6

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-------------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-------------------------------------  114 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-------------------------------------  114 (408)
                      .++++++.||++||++|+.+.|.+.++.+.+.+++.|..+.+.                                     
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~~~~~~~~aa~a~~aa~~~g~~~~~~~~lf~~~~~~~~  103 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALFGGIWNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHK  103 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECCCSTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHTSCC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEehhhccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            4688999999999999999999999999999877777765542                                     


Q ss_pred             ------------------------------------ccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHh
Q 015368          115 ------------------------------------LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       115 ------------------------------------~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                                                          .+...++++||.|+||+++  +|+......|..+.+.+.+.|+.
T Consensus       104 ~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~~v--ng~~~~~~~G~~~~e~l~~~i~~  181 (192)
T 3h93_A          104 KLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVV--NGKYRFDIGSAGGPEETLKLADY  181 (192)
T ss_dssp             CCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEEEHHHHTSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHhCCCCCCeEEE--CCEEEecccccCCHHHHHHHHHH
Confidence                                                0112356789999999977  78666666688899999888876


Q ss_pred             Hh
Q 015368          159 KM  160 (408)
Q Consensus       159 ~~  160 (408)
                      .+
T Consensus       182 l~  183 (192)
T 3h93_A          182 LI  183 (192)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.87  E-value=1.3e-07  Score=82.57  Aligned_cols=198  Identities=13%  Similarity=0.064  Sum_probs=128.3

Q ss_pred             CCcccccChhHHHHHh-ccCCeEEEEEecCCCCcCH---HHHHHHh-ccCC---ceeEEEec-----CHhHHhhcCCCCC
Q 015368          162 LGTYSITTTDEAERIL-TVESKLVLGFLHDLEGMES---EELAAAS-KLHS---DVNFYQTT-----SADVAEFFHIHPK  228 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~-~~~~~~vi~f~~~~~~~~~---~~~~~~a-~~~~---~~~f~~~~-----~~~l~~~~~i~~~  228 (408)
                      .++..++ .++++..+ ..++.++|.|+++||.++.   +.+..++ ++.+   .+.|+.+.     +.++++++++.  
T Consensus        12 ~~v~~l~-~~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~--   88 (244)
T 3q6o_A           12 DPLTLLQ-ADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIP--   88 (244)
T ss_dssp             SSSEEEC-TTTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCC--
T ss_pred             CCceeCC-hhhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCC--
Confidence            3466664 46666655 5568899999999999854   4456666 3443   68887663     46799999999  


Q ss_pred             CCCCeEEEeecCCC----cccccCCcCCHHHHHHHHhc----CC------CCceEeeccccccccccCC--ccEEEEEee
Q 015368          229 SKRPALIFLHLEAG----KATPFRHQFTRLAIANFVTH----TK------HPLVVTLTIHNAQFVFQDP--RKQLWLFAP  292 (408)
Q Consensus       229 ~~~p~l~~~~~~~~----~~~~y~g~~~~~~i~~fi~~----~~------~p~v~~lt~~~~~~~~~~~--~~~~i~f~~  292 (408)
                       ++|++++|+.+..    ....+.| .+.+.|.+||..    +.      .|.+...+..++..++...  .+.+++|.+
T Consensus        89 -~~Pt~~~~~~g~~~~~g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~~~al~f~~  166 (244)
T 3q6o_A           89 -GFPTVRFFXAFTXNGSGAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEX  166 (244)
T ss_dssp             -SSSEEEEECTTCCSSSCEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCSEEEEEEEC
T ss_pred             -ccCEEEEEeCCCcCCCCeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCceEEEEEEE
Confidence             5999999996432    2336666 578888888764    22      1223344445555555332  366777776


Q ss_pred             CCCchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCC-CCChHHHHHH
Q 015368          293 AYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNG-ELTLSSIKSF  371 (408)
Q Consensus       293 ~~~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~-~~~~~~i~~F  371 (408)
                      ...     ...++++..+... +++.+..++..+    ..+++.||++.  .|.+++++.+|+.-.++. .-+.+.+..+
T Consensus       167 ~~~-----~~~~~~~~d~~~~-~~i~v~~~~~~~----~~l~~~f~v~~--~Pslvl~~~~g~~~~~~~~~~~r~~~~~~  234 (244)
T 3q6o_A          167 GGS-----YLAREVALDLSQH-KGVAVRRVLNTE----ANVVRKFGVTD--FPSCYLLFRNGSVSRVPVLMESRSFYTAY  234 (244)
T ss_dssp             TTC-----CHHHHHHHHTTTC-TTEEEEEEETTC----HHHHHHHTCCC--SSEEEEEETTSCEEECCCSSSSHHHHHHH
T ss_pred             CCc-----chHHHHHHHhccC-CceEEEEEeCch----HHHHHHcCCCC--CCeEEEEeCCCCeEeeccccccHHHHHHH
Confidence            543     2455677777632 128888888542    47889999964  689988887666555553 3445556666


Q ss_pred             HHHHh
Q 015368          372 GEEFL  376 (408)
Q Consensus       372 i~~~~  376 (408)
                      ++.+.
T Consensus       235 l~~~~  239 (244)
T 3q6o_A          235 LQRLS  239 (244)
T ss_dssp             HHTC-
T ss_pred             HHhCC
Confidence            66543

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.86  E-value=3e-09  Score=75.65  Aligned_cols=71  Identities=11%  Similarity=0.174  Sum_probs=53.8

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHH---HcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK---EYNILAYPTLYLFVAGVRQFQFFGERTRDVIS  153 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~---~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~  153 (408)
                      ++.||++||++|++..+.+++.      ++.+..+|+++++++.+   ++++.++|++  +.+|+.    .|..+.+.|.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~--~~~g~~----~~g~~~~~l~   70 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVV--IAGDLS----WSGFRPDMIN   70 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEE--EETTEE----EESCCHHHHG
T ss_pred             EEEEcCCCChhHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHhCCCccCEE--EECCEE----EecCCHHHHH
Confidence            6779999999999999988763      47788899998766554   5899999998  347743    2345677777


Q ss_pred             HHHHhH
Q 015368          154 AWVREK  159 (408)
Q Consensus       154 ~~i~~~  159 (408)
                      +++.+.
T Consensus        71 ~~l~~~   76 (81)
T 1h75_A           71 RLHPAP   76 (81)
T ss_dssp             GGSCCC
T ss_pred             HHHhcc
Confidence            666543

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.86  E-value=1.1e-08  Score=89.09  Aligned_cols=85  Identities=13%  Similarity=0.217  Sum_probs=66.1

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC---------------------------------------
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA---------------------------------------  113 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~---------------------------------------  113 (408)
                      ++.+++.|+.+||++|+++.|.+.++.+.  ++|.+..+..                                       
T Consensus        97 ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~  174 (241)
T 1v58_A           97 APVIVYVFADPFCPYCKQFWQQARPWVDS--GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  174 (241)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHT--TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCeEEEEEECCCChhHHHHHHHHHHHHhC--CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcc
Confidence            46789999999999999999999987765  3566654432                                       


Q ss_pred             -----------cccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          114 -----------YLEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       114 -----------~~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                                 +.+.++++++||+++||+++.+ +|+ .....|..+.+.|.++|.+..
T Consensus       175 ~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~-~~~~~G~~~~~~L~~~l~~~~  232 (241)
T 1v58_A          175 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQKTLNIIMGNKL  232 (241)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCHHHHHHHTTC--
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHHHHHH
Confidence                       1234567889999999999988 684 467889999999999887655

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.86  E-value=1.8e-08  Score=86.59  Aligned_cols=86  Identities=13%  Similarity=0.078  Sum_probs=68.2

Q ss_pred             cEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc-------------------------------HhHHHH
Q 015368           75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-------------------------------KDLAKE  122 (408)
Q Consensus        75 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~-------------------------------~~~~~~  122 (408)
                      .+|+.||++||++|..++|.+.++++++++ ++.++.|++|..                               .++++.
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~  113 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAIL  113 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHH
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHHHH
Confidence            566677999999999999999999999976 799999987642                               235677


Q ss_pred             cCCC------------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhHh
Q 015368          123 YNIL------------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREKM  160 (408)
Q Consensus       123 ~~i~------------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~~  160 (408)
                      ||+.            .+|++++++ +|++...+.|.    ++.+++.+.|+...
T Consensus       114 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          114 LGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             TTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             hCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHH
Confidence            7773            379999998 89888777653    57888888876543

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.83  E-value=1.7e-08  Score=70.38  Aligned_cols=68  Identities=12%  Similarity=0.174  Sum_probs=53.9

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHH---HcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAK---EYNILAYPTLYLFVAGVRQFQFFGERTRDVIS  153 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~---~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~  153 (408)
                      ++.|+++||++|++..+.+++.      ++.+..+|++.++++.+   ++++.++|++++  +|+.    .|..+.+.+.
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~di~~~~~~~~~~~~~~~~~vP~l~~--~g~~----~~g~~~~~l~   70 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA------GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGEH----WSGFRPERIK   70 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTEE----EESCCHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHcCCCccCEEEE--CCeE----EcCCCHHHHH
Confidence            5779999999999999988764      47788889988776655   899999999873  7743    3445778888


Q ss_pred             HHH
Q 015368          154 AWV  156 (408)
Q Consensus       154 ~~i  156 (408)
                      +++
T Consensus        71 ~~l   73 (75)
T 1r7h_A           71 QLQ   73 (75)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            776

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.81  E-value=1.6e-08  Score=87.18  Aligned_cols=86  Identities=8%  Similarity=0.036  Sum_probs=68.5

Q ss_pred             CcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc-----------------------------HhHHHH
Q 015368           74 RNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-----------------------------KDLAKE  122 (408)
Q Consensus        74 ~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~-----------------------------~~~~~~  122 (408)
                      ++++|.|| ++||++|..+++.+.++++++++ ++.++.|++|..                             .++++.
T Consensus        30 ~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va~~  109 (233)
T 2v2g_A           30 SWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELAVK  109 (233)
T ss_dssp             SEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHHHH
T ss_pred             CeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHHHH
Confidence            48999998 99999999999999999999876 789998887642                             235667


Q ss_pred             cCCC------------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhH
Q 015368          123 YNIL------------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREK  159 (408)
Q Consensus       123 ~~i~------------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~  159 (408)
                      ||+.            .+|++++++ +|++...+.|+    ++.+++.+.|+..
T Consensus       110 ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A          110 LGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             TTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             hCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            7774            479999998 89887777543    5678888877654

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.79  E-value=1.6e-08  Score=85.08  Aligned_cols=43  Identities=19%  Similarity=0.183  Sum_probs=39.1

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY  114 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~  114 (408)
                      .++++++.||++||++|+.+.|.+.++.+.+.+++.|..++++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            4689999999999999999999999999999878888888874

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.79  E-value=1.4e-08  Score=86.91  Aligned_cols=85  Identities=9%  Similarity=0.117  Sum_probs=67.4

Q ss_pred             cEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc----------------------------HhHHHHcCC
Q 015368           75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE----------------------------KDLAKEYNI  125 (408)
Q Consensus        75 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~----------------------------~~~~~~~~i  125 (408)
                      .+|+.||++||++|..+++.+.++++++++ ++.++.|++|..                            ..+++.||+
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv  113 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKI  113 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHHHHhCC
Confidence            455566999999999999999999999977 899999988642                            245677887


Q ss_pred             C------------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHhH
Q 015368          126 L------------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK  159 (408)
Q Consensus       126 ~------------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~  159 (408)
                      .            ..|++++++ +|++...+.|    .++.+++.+.|+..
T Consensus       114 ~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l  164 (220)
T 1xcc_A          114 MDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  164 (220)
T ss_dssp             EEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            3            379999998 8987777654    36788888888654

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.79  E-value=4.7e-09  Score=78.73  Aligned_cols=70  Identities=14%  Similarity=0.082  Sum_probs=50.2

Q ss_pred             hHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-------HhHHHHcCCCcCcEEEEEeCC
Q 015368           65 NFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------KDLAKEYNILAYPTLYLFVAG  137 (408)
Q Consensus        65 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-------~~~~~~~~i~~~Pt~~~~~~g  137 (408)
                      .+++.+..+  .++.|+++||++|+.+.+.++++...+. +  +..+|++.+       ..+.+.+|+.++|++  |.+|
T Consensus         4 ~~~~~i~~~--~v~~f~~~~C~~C~~~~~~L~~~~~~~~-~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g   76 (105)
T 1kte_A            4 FVNSKIQPG--KVVVFIKPTCPFCRKTQELLSQLPFKEG-L--LEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGK   76 (105)
T ss_dssp             HHHHHCCTT--CEEEEECSSCHHHHHHHHHHHHSCBCTT-S--EEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETT
T ss_pred             HHHhhcccC--CEEEEEcCCCHhHHHHHHHHHHcCCCCC-c--cEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECC
Confidence            455555444  3667999999999999999987654443 2  555676655       357888999999997  4478


Q ss_pred             eEeE
Q 015368          138 VRQF  141 (408)
Q Consensus       138 ~~~~  141 (408)
                      +.+.
T Consensus        77 ~~i~   80 (105)
T 1kte_A           77 ECIG   80 (105)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6543

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.74  E-value=3.8e-07  Score=87.96  Aligned_cols=181  Identities=13%  Similarity=0.096  Sum_probs=122.7

Q ss_pred             CcccccChhHHHHHh-ccCCeEEEEEecCCCCcC---HHHHHHHh-ccCC---ceeEEEec-----CHhHHhhcCCCCCC
Q 015368          163 GTYSITTTDEAERIL-TVESKLVLGFLHDLEGME---SEELAAAS-KLHS---DVNFYQTT-----SADVAEFFHIHPKS  229 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~-~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~---~~~f~~~~-----~~~l~~~~~i~~~~  229 (408)
                      .+..+ +.++++..+ +.++.++|.|+++||.++   .+.+..++ ++.+   .+.|+.+.     +.+++++|+|.   
T Consensus        13 ~V~~L-t~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~---   88 (519)
T 3t58_A           13 PLTLL-DADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIA---   88 (519)
T ss_dssp             SSEEE-CTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCC---
T ss_pred             CcEEC-ChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCc---
Confidence            45566 446676655 556889999999999974   44566666 4444   68888764     56899999999   


Q ss_pred             CCCeEEEeecCC---CcccccCCcCCHHHHHHHHhc----CC------CCceEeeccccccccccCCc--cEEEEEeeCC
Q 015368          230 KRPALIFLHLEA---GKATPFRHQFTRLAIANFVTH----TK------HPLVVTLTIHNAQFVFQDPR--KQLWLFAPAY  294 (408)
Q Consensus       230 ~~p~l~~~~~~~---~~~~~y~g~~~~~~i~~fi~~----~~------~p~v~~lt~~~~~~~~~~~~--~~~i~f~~~~  294 (408)
                      ++|++++|+.+.   .....+.|..+.++|.+||.+    +.      .|.+..++..++..++....  +++++|.+.+
T Consensus        89 ~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~l~~~~~~~vallF~~~~  168 (519)
T 3t58_A           89 GFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFERED  168 (519)
T ss_dssp             SBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTGGGSCCCSEEEEEEECTT
T ss_pred             ccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHHhccCCCCeEEEEecCCc
Confidence            699999999632   233455666788888888764    22      13345556667766665543  6777888664


Q ss_pred             CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccC
Q 015368          295 GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVL  359 (408)
Q Consensus       295 ~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~  359 (408)
                      .     ...++++..+... +++.+..++..+    ..+++.||++.  .|.+++++.+|+.-.+
T Consensus       169 s-----~~~~~~~ldl~~~-~~v~v~~v~~~~----~~l~~kfgV~~--~Pslvl~~~nGk~~~~  221 (519)
T 3t58_A          169 S-----YLGREVTLDLSQY-HAVAVRRVLNTE----SDLVNKFGVTD--FPSCYLLLRNGSVSRV  221 (519)
T ss_dssp             C-----CHHHHHHHHTTTC-TTEEEEEEETTC----HHHHHHHTCCC--SSEEEEEETTSCEEEC
T ss_pred             h-----HHHHHHHHHhhcc-CCeeEEEecCch----HHHHHHcCCCC--CCeEEEEeCCCceeec
Confidence            3     1456777777732 228888887542    47889999964  6898888876654433

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.72  E-value=3.9e-08  Score=73.54  Aligned_cols=96  Identities=20%  Similarity=0.280  Sum_probs=74.9

Q ss_pred             cccccChhHHHHHhcc--CCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEE
Q 015368          164 TYSITTTDEAERILTV--ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI  235 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~--~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~  235 (408)
                      +..|.|.+++++.+..  ++.+++.|+++||+++   .+.+..+++..+++.|+.+   .+.+++++|++.   ++|+++
T Consensus         2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~---~~PT~~   78 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQDNQIA---CMPTFL   78 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCC---BSSEEE
T ss_pred             eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHHHHcCCC---eecEEE
Confidence            3567888999988854  5678888999999984   4456667766667888765   567899999999   599999


Q ss_pred             EeecCCCcccccCCcCCHHHHHHHHhcCC
Q 015368          236 FLHLEAGKATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       236 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                      +|+.+. ....+.| .+.++|.+||++|+
T Consensus        79 ~~~~G~-~v~~~~G-~~~~~l~~~i~k~K  105 (105)
T 3zzx_A           79 FMKNGQ-KLDSLSG-ANYDKLLELVEKNK  105 (105)
T ss_dssp             EEETTE-EEEEEES-CCHHHHHHHHHHHC
T ss_pred             EEECCE-EEEEEeC-cCHHHHHHHHHhcC
Confidence            998653 4456778 48899999998764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=1.9e-08  Score=78.50  Aligned_cols=87  Identities=16%  Similarity=0.149  Sum_probs=58.5

Q ss_pred             hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc---H----hHHHHcCCCcCcEEEEEe
Q 015368           63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE---K----DLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        63 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~---~----~~~~~~~i~~~Pt~~~~~  135 (408)
                      .+.++..+..++ ++| |+++||++|+.+.+.++++.      +.+..+|++.+   +    .+++.+++.++|+++  .
T Consensus        17 ~~~~~~~i~~~~-vvv-f~~~~Cp~C~~~~~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~--i   86 (130)
T 2cq9_A           17 VNQIQETISDNC-VVI-FSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--V   86 (130)
T ss_dssp             HHHHHHHHHHSS-EEE-EECSSCSHHHHHHHHHHHHT------CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEE--E
T ss_pred             HHHHHHHHcCCc-EEE-EEcCCChHHHHHHHHHHHcC------CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEE--E
Confidence            445666665553 433 99999999999999988753      44566777654   3    378889999999984  4


Q ss_pred             CCeEeEEee---CCCCHHHHHHHHHhH
Q 015368          136 AGVRQFQFF---GERTRDVISAWVREK  159 (408)
Q Consensus       136 ~g~~~~~~~---g~~~~~~l~~~i~~~  159 (408)
                      +|+.+..+.   +......|.++|...
T Consensus        87 ~G~~igg~~~l~~~~~~~~L~~~L~~~  113 (130)
T 2cq9_A           87 NGTFIGGATDTHRLHKEGKLLPLVHQC  113 (130)
T ss_dssp             TTEEEEEHHHHHHHHHHTSSHHHHHHH
T ss_pred             CCEEEcChHHHHHHHHcCcHHHHHHHc
Confidence            886554432   223344566666554

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=98.67  E-value=8.2e-08  Score=81.45  Aligned_cols=109  Identities=14%  Similarity=0.102  Sum_probs=76.6

Q ss_pred             CCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEecCC-ChhHH-----hhhHHHHHHHHHhcCCcEEEEEeCcc---
Q 015368           45 NNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANW-CYWSK-----KLAPEFAAAAKMLKGEADLVMVDAYL---  115 (408)
Q Consensus        45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~w-C~~C~-----~~~p~~~~~~~~~~~~v~~~~v~~~~---  115 (408)
                      ..|..+|.+   .+...+++.+...-..+++++|+||+.| |++|.     .+++.|.+.   + .++.++.|++|.   
T Consensus        23 ~vG~~APdF---tL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~-~gv~VvgIS~Ds~~~   95 (224)
T 3keb_A           23 RKGDYLPSF---MLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W-PHLKLIVITVDSPSS   95 (224)
T ss_dssp             CTTCBCCCC---EEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C-TTSEEEEEESSCHHH
T ss_pred             CCCCCCCCe---EEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c-CCCEEEEEECCCHHH
Confidence            344455544   2344444444322236789999999999 99999     888888777   4 468888887642   


Q ss_pred             --------------------cHhHHHHcCCCc---------CcEEEEEe-CCeEeEEee-----CCCCHHHHHHHHHhHh
Q 015368          116 --------------------EKDLAKEYNILA---------YPTLYLFV-AGVRQFQFF-----GERTRDVISAWVREKM  160 (408)
Q Consensus       116 --------------------~~~~~~~~~i~~---------~Pt~~~~~-~g~~~~~~~-----g~~~~~~l~~~i~~~~  160 (408)
                                          +..+++.||+..         .|++++++ +|++...+.     +..+.+++.+.|+...
T Consensus        96 ~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l~  175 (224)
T 3keb_A           96 LARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEGE  175 (224)
T ss_dssp             HHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHhh
Confidence                                356888999874         79999998 997776554     3466788888776554

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.62  E-value=6.9e-09  Score=79.05  Aligned_cols=62  Identities=11%  Similarity=0.055  Sum_probs=46.1

Q ss_pred             cEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-------hHHHHcCCCcCcEEEEEeCCeEeE
Q 015368           75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-------DLAKEYNILAYPTLYLFVAGVRQF  141 (408)
Q Consensus        75 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-------~~~~~~~i~~~Pt~~~~~~g~~~~  141 (408)
                      ..++.|+++||++|+.+.+.++++...+. +  +..+|++.++       ++.+.+|+.++|++++  +|+.+.
T Consensus        19 ~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~-~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~~ig   87 (114)
T 2hze_A           19 NKVTIFVKYTCPFCRNALDILNKFSFKRG-A--YEIVDIKEFKPENELRDYFEQITGGKTVPRIFF--GKTSIG   87 (114)
T ss_dssp             TCEEEEECTTCHHHHHHHHHHTTSCBCTT-S--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE--TTEEEE
T ss_pred             CCEEEEEeCCChhHHHHHHHHHHcCCCcC-c--eEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence            35777999999999999998876432211 1  7788888764       6888999999998743  786543

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.59  E-value=3.9e-08  Score=78.11  Aligned_cols=86  Identities=16%  Similarity=0.163  Sum_probs=56.3

Q ss_pred             hhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc---H----hHHHHcCCCcCcEEEEEe
Q 015368           63 GKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE---K----DLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        63 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~---~----~~~~~~~i~~~Pt~~~~~  135 (408)
                      ...++..+..+ .++| |+++||++|+.+.+.++++.      +.+..+|++.+   +    .+++.+|+.++|+++  .
T Consensus        39 ~~~~~~~i~~~-~Vvv-f~~~~Cp~C~~~k~~L~~~~------i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if--i  108 (146)
T 2ht9_A           39 VNQIQETISDN-CVVI-FSKTSCSYCTMAKKLFHDMN------VNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF--V  108 (146)
T ss_dssp             HHHHHHHHHHC-SEEE-EECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE--E
T ss_pred             HHHHHHHhcCC-CEEE-EECCCChhHHHHHHHHHHcC------CCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE--E
Confidence            35566666555 3444 99999999999999988753      44556666654   3    378899999999984  4


Q ss_pred             CCeEeEEee---CCCCHHHHHHHHHh
Q 015368          136 AGVRQFQFF---GERTRDVISAWVRE  158 (408)
Q Consensus       136 ~g~~~~~~~---g~~~~~~l~~~i~~  158 (408)
                      +|+.+..+.   +......|.++|..
T Consensus       109 ~G~~igG~d~l~~l~~~g~L~~~L~~  134 (146)
T 2ht9_A          109 NGTFIGGATDTHRLHKEGKLLPLVHQ  134 (146)
T ss_dssp             TTEEEESHHHHHHHHHTTCHHHHHHH
T ss_pred             CCEEEeCchHHHHHHHcChHHHHHHH
Confidence            886543321   11223345555544

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.51  E-value=5.3e-07  Score=75.46  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=37.6

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA  113 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~  113 (408)
                      .+++++|.||+.||++|+.+.|.+.++.+.+.+++.|..+.+
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~   64 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLRTEHV   64 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence            468899999999999999999999999999887788877765

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.51  E-value=1.1e-06  Score=71.56  Aligned_cols=117  Identities=14%  Similarity=0.174  Sum_probs=89.7

Q ss_pred             HHHHHhcCCCCceEeeccccccccccCCc--cEEEEEee--------CCC-chHHHHHHHHHHHHhc-----CCcceEEE
Q 015368          256 IANFVTHTKHPLVVTLTIHNAQFVFQDPR--KQLWLFAP--------AYG-SDKVILTFEEVAKALK-----GKVNMLLH  319 (408)
Q Consensus       256 i~~fi~~~~~p~v~~lt~~~~~~~~~~~~--~~~i~f~~--------~~~-~~~~~~~~~~vA~~~~-----~~~~~i~f  319 (408)
                      +.+++....-..+.++|.++|..+...+.  ++++.|..        ||. |+.+...|+++|+++.     ++   +.|
T Consensus         8 ~~~l~~l~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~---v~f   84 (178)
T 3ga4_A            8 IDDILQLKDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSL---NLF   84 (178)
T ss_dssp             CHHHHTTCCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCC---EEE
T ss_pred             HHHHHHhhccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCC---EEE
Confidence            34455555556788999999998875433  67777776        776 9999999999999998     78   999


Q ss_pred             EEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCcc-----------cc--CC-C-CCChHHHHHHHHHHhcCcc
Q 015368          320 VYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKK-----------YV--LN-G-ELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       320 ~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~-----------y~--~~-~-~~~~~~i~~Fi~~~~~gk~  380 (408)
                      +.+|.++   ++.+.+.|||..  .|.++++.. ++..           +.  +. + ..+.+.|.+||.+-..-++
T Consensus        85 ~kvD~d~---~~~la~~~~I~s--iPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t~~~i  156 (178)
T 3ga4_A           85 FTVDVNE---VPQLVKDLKLQN--VPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKILNISI  156 (178)
T ss_dssp             EEEETTT---CHHHHHHTTCCS--SCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHHTCCC
T ss_pred             EEEECcc---CHHHHHHcCCCC--CCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhcCCCc
Confidence            9999987   568999999954  688888876 2222           33  33 4 6888999999998776444

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.49  E-value=3.4e-07  Score=76.83  Aligned_cols=42  Identities=17%  Similarity=0.322  Sum_probs=36.2

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA  113 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~  113 (408)
                      .++++++.||.+||++|+.+.|.+.++.+.+++++.+..+.+
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence            467899999999999999999999999999877777766654

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.48  E-value=8.5e-07  Score=76.45  Aligned_cols=97  Identities=10%  Similarity=0.205  Sum_probs=81.2

Q ss_pred             CcccccChhHHHHHhccCCeEEEEEec--CCCCcCHHHHHHHh-ccC--CceeEEEec--------CHhHHhhcCCC--C
Q 015368          163 GTYSITTTDEAERILTVESKLVLGFLH--DLEGMESEELAAAS-KLH--SDVNFYQTT--------SADVAEFFHIH--P  227 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~vi~f~~--~~~~~~~~~~~~~a-~~~--~~~~f~~~~--------~~~l~~~~~i~--~  227 (408)
                      .+..+ +.++++..+..+..++|.|+.  +||+ ..+.|..++ .+.  +++.|+.+.        +.+++++|+|.  .
T Consensus         6 ~v~~L-t~~nF~~~i~~~~~vlV~FyA~~pWCg-l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~   83 (240)
T 2qc7_A            6 GALPL-DTVTFYKVIPKSKFVLVKFDTQYPYGE-KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKES   83 (240)
T ss_dssp             TCEEC-CTTHHHHHGGGCSEEEEEECCSSCCSH-HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGG
T ss_pred             CceEC-CHHHHHHHHcCCCCEEEEEeCCCCCCc-chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCC
Confidence            35556 457888888888899999999  9999 888888887 443  578898876        67899999998  6


Q ss_pred             CCCCCeEEEeecCC-CcccccCCcCCHHHHHHHHhcCC
Q 015368          228 KSKRPALIFLHLEA-GKATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       228 ~~~~p~l~~~~~~~-~~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                         +|++++|+.+. .....|.|..+.++|.+||..+.
T Consensus        84 ---~PTl~~f~~G~~~~~~~y~G~~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           84 ---YPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKGQG  118 (240)
T ss_dssp             ---CSEEEEEETTCSSCCEECCSCSCHHHHHHHHHHTT
T ss_pred             ---CCEEEEEeCCCcCcceeecCCCCHHHHHHHHHHhc
Confidence               89999999875 35779999999999999999886

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.48  E-value=1.1e-06  Score=68.14  Aligned_cols=99  Identities=12%  Similarity=0.081  Sum_probs=75.7

Q ss_pred             CCCcccccChhHHHHHhc-cCCeEEEEEecCCCCcCH---HHHHHHhc------cCCceeEEEe---cCHhHHhhcCCCC
Q 015368          161 TLGTYSITTTDEAERILT-VESKLVLGFLHDLEGMES---EELAAASK------LHSDVNFYQT---TSADVAEFFHIHP  227 (408)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~---~~~~~~a~------~~~~~~f~~~---~~~~l~~~~~i~~  227 (408)
                      ...+..+ +.++++..+. .++.++|.|+++||.++.   +.+..+++      ..+.+.|+.+   .+.++++++++. 
T Consensus        14 ~~~v~~l-~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~-   91 (127)
T 3h79_A           14 PSRVVEL-TDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVS-   91 (127)
T ss_dssp             CCCCEEC-CTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCC-
T ss_pred             CCceEEC-ChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCc-
Confidence            3456666 5577887774 588999999999998743   44555542      3456888776   467899999999 


Q ss_pred             CCCCCeEEEeecCCCc-ccccCCcCCHHHHHHHHhcC
Q 015368          228 KSKRPALIFLHLEAGK-ATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       228 ~~~~p~l~~~~~~~~~-~~~y~g~~~~~~i~~fi~~~  263 (408)
                        ++|++++|+.++.. +..|.|..+.++|.+||.++
T Consensus        92 --~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           92 --GFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             --SSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             --cCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence              69999999877543 37899999999999999864

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=98.46  E-value=3.9e-07  Score=76.68  Aligned_cols=110  Identities=18%  Similarity=0.239  Sum_probs=79.3

Q ss_pred             CCCCCCCCccCCC-----cEEcChhhHHHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc--
Q 015368           45 NNNHTWPLLYAKD-----VVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL--  115 (408)
Q Consensus        45 ~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~--  115 (408)
                      ..|+.+|++.-..     ...++-.+|     .+|++++.|| +.||+.|..+++.|.+.+++++. ++.++.|++|.  
T Consensus        24 ~VG~~APdF~l~a~~d~~~~~vsLsd~-----~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~   98 (216)
T 3sbc_A           24 QVQKQAPTFKKTAVVDGVFDEVSLDKY-----KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEY   98 (216)
T ss_dssp             CTTSBCCCCCEEEEETTEEEEECGGGG-----TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHH
T ss_pred             hcCCcCCCCCCcceECCCCcEEehHHh-----CCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchh
Confidence            4556777764222     223333322     5789999999 99999999999999999999976 89999998863  


Q ss_pred             --------------------------cHhHHHHcCCC------cCcEEEEEe-CCeEeEEe--e--CCCCHHHHHHHHHh
Q 015368          116 --------------------------EKDLAKEYNIL------AYPTLYLFV-AGVRQFQF--F--GERTRDVISAWVRE  158 (408)
Q Consensus       116 --------------------------~~~~~~~~~i~------~~Pt~~~~~-~g~~~~~~--~--g~~~~~~l~~~i~~  158 (408)
                                                +.++++.||+-      ..+.+++++ +|.+....  .  -.++.+++.+.|+.
T Consensus        99 sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~A  178 (216)
T 3sbc_A           99 SLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEA  178 (216)
T ss_dssp             HHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHH
Confidence                                      24678889873      368899998 88654322  2  34688888877754


Q ss_pred             H
Q 015368          159 K  159 (408)
Q Consensus       159 ~  159 (408)
                      .
T Consensus       179 l  179 (216)
T 3sbc_A          179 F  179 (216)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.45  E-value=5e-07  Score=65.64  Aligned_cols=70  Identities=9%  Similarity=0.081  Sum_probs=52.2

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-----cc----HhHHHHcCCCcCcEEEEEeCCeEeEEeeCC
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-----LE----KDLAKEYNILAYPTLYLFVAGVRQFQFFGE  146 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-----~~----~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~  146 (408)
                      .++.|+++||++|++..+.++++.      +.+-.+|++     +.    .++.+.+++.++|++++  +|+    +.|.
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~~g------i~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~----~i~G   80 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKREG------VDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDK----HVLG   80 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHHHT------CCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTE----EEES
T ss_pred             eEEEEECCCChHHHHHHHHHHHcC------CCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCE----EEeC
Confidence            366799999999999998887753      344455555     33    56778899999999976  773    2344


Q ss_pred             CCHHHHHHHHH
Q 015368          147 RTRDVISAWVR  157 (408)
Q Consensus       147 ~~~~~l~~~i~  157 (408)
                      .+.+.|.+++.
T Consensus        81 ~~~~~l~~~l~   91 (92)
T 3ic4_A           81 YNEEKLKELIR   91 (92)
T ss_dssp             CCHHHHHHHHH
T ss_pred             CCHHHHHHHhc
Confidence            68999998875

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=98.44  E-value=4.1e-07  Score=72.19  Aligned_cols=81  Identities=16%  Similarity=0.237  Sum_probs=62.7

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC--------------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--------------------------------------  113 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~--------------------------------------  113 (408)
                      +++.+++.|..++|++|+++.+.++++    . ++.+.....                                      
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~-~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~~   87 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM----T-DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPVG   87 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC----C-SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc----C-ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCCc
Confidence            468899999999999999999998754    2 444443321                                      


Q ss_pred             --------cccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          114 --------YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       114 --------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                              +++.++++++||+++||+++ .+|+   .+.|..+.+.|.++|.+...
T Consensus        88 ~~~~~~~v~~~~~la~~~gI~gtPt~vi-~nG~---~i~G~~~~~~l~~~i~~~~~  139 (147)
T 3gv1_A           88 GSICDNPVAETTSLGEQFGFNGTPTLVF-PNGR---TQSGYSPMPQLEEIIRKNQQ  139 (147)
T ss_dssp             CCCCSCSHHHHHHHHHHTTCCSSCEEEC-TTSC---EEESCCCTTHHHHHHHHTSC
T ss_pred             cHHHHHHHHHHHHHHHHhCCCccCEEEE-ECCE---EeeCCCCHHHHHHHHHHHHH
Confidence                    11345788999999999988 7784   47899999999999987653

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.42  E-value=1.5e-06  Score=71.40  Aligned_cols=81  Identities=15%  Similarity=0.144  Sum_probs=61.6

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHh--cCCcEEEEEeCcc----------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYL----------------------------------  115 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~--~~~v~~~~v~~~~----------------------------------  115 (408)
                      .++++++.|+..|||+|+.+.|.+.++.+++  .+++.+......-                                  
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~lf~~~  105 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQ  105 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTH
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCCCCcccHHHHHHHHHHHHhcChHHHHHHHHHHHHcC
Confidence            4578899999999999999999999998888  5566666544310                                  


Q ss_pred             --------------------------------cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHH
Q 015368          116 --------------------------------EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       116 --------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~  157 (408)
                                                      +..+++++||.|+||+++  +|+   .+.|..+.+.|.+.|.
T Consensus       106 ~~~~~~~~~~l~~~a~~~~Gld~~~~~~~~~~~~~~a~~~gv~gtPt~vv--ng~---~~~G~~~~~~l~~~i~  174 (175)
T 1z6m_A          106 DEWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEY---IFDESVTEEELRGYIE  174 (175)
T ss_dssp             HHHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTE---EECTTCCHHHHHHHHT
T ss_pred             hhhccCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHcCCCCcCeEEE--CCE---EccCCCCHHHHHHHhc
Confidence                                            112356789999999654  785   4579899999888774

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.41  E-value=6.5e-07  Score=67.08  Aligned_cols=104  Identities=15%  Similarity=0.182  Sum_probs=83.3

Q ss_pred             CCceEeeccccccccccCCccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          265 HPLVVTLTIHNAQFVFQDPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       265 ~p~v~~lt~~~~~~~~~~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      .+.+..++.+++......+.+.++. +.+++. |....+.+.+++.++.++   +.|+.+|++..   +.+++.|++.. 
T Consensus         3 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~i~~-   75 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLNVDEN---QKIADKYSVLN-   75 (109)
T ss_dssp             CCCCEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTC---HHHHHHTTCCS-
T ss_pred             CCeEEEecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC---ceEEEEccccC---HHHHHhcCccc-
Confidence            3567889999999888777766554 555665 899999999999999988   99999998864   57889999954 


Q ss_pred             CCcEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          343 APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       343 ~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                       .|.++++..+.....+.|..+.+++.+|+++++
T Consensus        76 -~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l  108 (109)
T 3tco_A           76 -IPTTLIFVNGQLVDSLVGAVDEDTLESTVNKYL  108 (109)
T ss_dssp             -SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHC
T ss_pred             -CCEEEEEcCCcEEEeeeccCCHHHHHHHHHHHh
Confidence             688887744444455788889999999999875

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.40  E-value=1.9e-06  Score=66.97  Aligned_cols=103  Identities=21%  Similarity=0.198  Sum_probs=82.1

Q ss_pred             ceEeeccccccc-cccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          267 LVVTLTIHNAQF-VFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       267 ~v~~lt~~~~~~-~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      .+..++.+++.. +...+.++++ ++.+||. |+...+.+.++++++.++   +.|+.+|++..   ..+++.|++.  .
T Consensus        18 ~v~~l~~~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~---~~l~~~~~v~--~   89 (130)
T 2dml_A           18 DVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKH---QSLGGQYGVQ--G   89 (130)
T ss_dssp             SSEECCTTTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTC---HHHHHHHTCC--S
T ss_pred             CcEECCHHHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCC---HHHHHHcCCC--c
Confidence            467888888887 4444555555 5556776 999999999999999988   99999998864   4788999995  4


Q ss_pred             CcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhc
Q 015368          344 PRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       344 ~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .|.+++++.++. ...+.|..+.+++.+|+.+.+.
T Consensus        90 ~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           90 FPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             SSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             cCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence            789999887555 6678899999999999988764

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.38  E-value=3.2e-07  Score=70.05  Aligned_cols=70  Identities=11%  Similarity=0.256  Sum_probs=50.5

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhh-hHHHHHHHHHhcCCcEEEEEeCcccH-------hHHHHcCCCcCcEEEEEe
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKL-APEFAAAAKMLKGEADLVMVDAYLEK-------DLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~-~p~~~~~~~~~~~~v~~~~v~~~~~~-------~~~~~~~i~~~Pt~~~~~  135 (408)
                      +.+++.+..++  ++.|+++||++|+.. .+.+++...   ..+.+..+|++.++       ++.+.+|+.++|++  |.
T Consensus        16 ~~~~~~i~~~~--Vvvf~~~~Cp~C~~alk~~L~~~~~---~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi   88 (118)
T 3c1r_A           16 KHVKDLIAENE--IFVASKTYCPYCHAALNTLFEKLKV---PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YI   88 (118)
T ss_dssp             HHHHHHHHHSS--EEEEECSSCHHHHHHHHHHHTTSCC---CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EE
T ss_pred             HHHHHHHccCc--EEEEEcCCCcCHHHHHHHHHHHcCC---CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EE
Confidence            34555665443  555999999999998 777765431   13788888888764       58888999999987  55


Q ss_pred             CCeEe
Q 015368          136 AGVRQ  140 (408)
Q Consensus       136 ~g~~~  140 (408)
                      +|+.+
T Consensus        89 ~g~~i   93 (118)
T 3c1r_A           89 NGKHI   93 (118)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            88554

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.4e-06  Score=67.40  Aligned_cols=105  Identities=14%  Similarity=0.079  Sum_probs=83.0

Q ss_pred             CceEeeccccccccccCCccEEEEEeeCCC-chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          266 PLVVTLTIHNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       266 p~v~~lt~~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      ..+..++.+++..+.... .++.++.++|. |......+.++++++.+ +   +.|+.+|++..   ..+++.|++..  
T Consensus         7 ~~v~~l~~~~f~~~~~~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~---v~~~~vd~~~~---~~~~~~~~v~~--   77 (126)
T 1x5e_A            7 GNVRVITDENWRELLEGD-WMIEFYAPWCPACQNLQPEWESFAEWGEDLE---VNIAKVDVTEQ---PGLSGRFIINA--   77 (126)
T ss_dssp             CSEEECCTTTHHHHTSSE-EEEEEECSSCHHHHHHHHHHHHHHHHHGGGT---CEEEEEETTTC---HHHHHHTTCCS--
T ss_pred             CccEEecHHHHHHHhCCC-EEEEEECCCCHHHHHHhHHHHHHHHHhccCC---eEEEEEECcCC---HHHHHHcCCcc--
Confidence            457788999988876553 44556667776 99999999999999985 6   99999998864   47889999953  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHHHHHhcCcc
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      .|.++++. +|+...+.|..+.+++.+|+++.+...+
T Consensus        78 ~Pt~~~~~-~G~~~~~~G~~~~~~l~~~l~~~~~~~~  113 (126)
T 1x5e_A           78 LPTIYHCK-DGEFRRYQGPRTKKDFINFISDKEWKSI  113 (126)
T ss_dssp             SSEEEEEE-TTEEEECCSCCCHHHHHHHHHTCGGGGS
T ss_pred             cCEEEEEe-CCeEEEeecCCCHHHHHHHHHHHhhccC
Confidence            68888874 4566678899999999999998876554

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=98.38  E-value=1.2e-06  Score=69.09  Aligned_cols=88  Identities=20%  Similarity=0.346  Sum_probs=71.9

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLN  360 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~  360 (408)
                      +.++++ ++.+||. |......+.+++.++.++   +.|+.+|++..   ..+++.||+.  ..|.+++++.+++...+.
T Consensus        51 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~v~--~~Pt~~~~~~~g~~~~~~  122 (141)
T 3hxs_A           51 DKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKE---PELARDFGIQ--SIPTIWFVPMKGEPQVNM  122 (141)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEETTTC---HHHHHHTTCC--SSSEEEEECSSSCCEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEECCCC---HHHHHHcCCC--CcCEEEEEeCCCCEEEEe
Confidence            445554 5566776 999999999999999988   99999999864   5888999995  478999987766656778


Q ss_pred             CCCChHHHHHHHHHHhcC
Q 015368          361 GELTLSSIKSFGEEFLED  378 (408)
Q Consensus       361 ~~~~~~~i~~Fi~~~~~g  378 (408)
                      |..+.++|.+||+.++..
T Consensus       123 G~~~~~~l~~~l~~~l~k  140 (141)
T 3hxs_A          123 GALSKEQLKGYIDKVLLK  140 (141)
T ss_dssp             SCCCHHHHHHHHHHTTC-
T ss_pred             CCCCHHHHHHHHHHHHcc
Confidence            889999999999998764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.38  E-value=1.1e-06  Score=65.42  Aligned_cols=101  Identities=15%  Similarity=0.160  Sum_probs=79.6

Q ss_pred             ceEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          267 LVVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       267 ~v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      .+.+++.+++.... .+.+.++ ++.+++. |....+.+.++++++.++   +.|+.+|++..   +.+++.|++..  .
T Consensus         4 ~v~~l~~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~v~~--~   74 (106)
T 3die_A            4 AIVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDEN---PSTAAKYEVMS--I   74 (106)
T ss_dssp             CCEECCTTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC---HHHHHHTTCCS--B
T ss_pred             ceEECCHHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcC---HHHHHhCCCcc--c
Confidence            46778999988887 5555555 5556666 899999999999999998   99999998864   57889999954  6


Q ss_pred             cEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      |.+++++.+.....+.|..+.+++.+|+++++
T Consensus        75 Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           75 PTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             CEEEEEeCCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            88888864434456788889999999998753

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.37  E-value=7.8e-07  Score=66.95  Aligned_cols=102  Identities=18%  Similarity=0.246  Sum_probs=80.2

Q ss_pred             eEeeccccccccc-cCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVF-QDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~-~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +..++.+++.... ..+.+.++ ++.+++. |....+.+.++++++.++   +.|+.+|++..   +.+++.|++..  .
T Consensus         6 v~~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~---~~l~~~~~v~~--~   77 (111)
T 3gnj_A            6 LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDVEEE---KTLFQRFSLKG--V   77 (111)
T ss_dssp             SEECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTC---HHHHHHTTCCS--S
T ss_pred             ceecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCcC---hhHHHhcCCCc--C
Confidence            5677888888877 55555555 4556666 899999999999999988   99999999874   57889999954  6


Q ss_pred             cEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      |.++++..+.....+.|..+.+.+.+|+++.+.
T Consensus        78 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           78 PQILYFKDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             CEEEEEETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence            888887543344457888899999999998864

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=98.36  E-value=2e-06  Score=69.97  Aligned_cols=81  Identities=10%  Similarity=0.105  Sum_probs=60.3

Q ss_pred             HHHHHcCCCcEEEEEecCCChhHHh-hhHHHHHHHHHhcC-Cc-EEEEEeCcc-----------------------cHhH
Q 015368           66 FSEFMGKNRNVMVMFYANWCYWSKK-LAPEFAAAAKMLKG-EA-DLVMVDAYL-----------------------EKDL  119 (408)
Q Consensus        66 ~~~~~~~~~~~~v~f~a~wC~~C~~-~~p~~~~~~~~~~~-~v-~~~~v~~~~-----------------------~~~~  119 (408)
                      +.+.+..++.+|+.||+.||+.|.. ++|.|.+.+++++. ++ .++.|.+|.                       +.++
T Consensus        41 Lsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~~~f~lLsD~~~~v  120 (176)
T 4f82_A           41 VRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADGSAAF  120 (176)
T ss_dssp             HHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTCHH
T ss_pred             HHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCCCCceEEEcCchHH
Confidence            4444444445677888999999999 99999999999976 78 888888753                       3457


Q ss_pred             HHHcCCC-----------cCcEEEEEeCCeEeEEeeCC
Q 015368          120 AKEYNIL-----------AYPTLYLFVAGVRQFQFFGE  146 (408)
Q Consensus       120 ~~~~~i~-----------~~Pt~~~~~~g~~~~~~~g~  146 (408)
                      ++.||+.           ..|+++++++|++...+.++
T Consensus       121 a~ayGv~~~~~~~G~g~~s~R~tfII~dG~I~~~~~~~  158 (176)
T 4f82_A          121 THALGLTQDLSARGMGIRSLRYAMVIDGGVVKTLAVEA  158 (176)
T ss_dssp             HHHHTCEEECGGGTCCEEECCEEEEEETTEEEEEEECC
T ss_pred             HHHhCCCccccccCCCcccccEEEEEcCCEEEEEEEcC
Confidence            7888773           24777777999877666643

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.35  E-value=5.3e-07  Score=71.25  Aligned_cols=115  Identities=14%  Similarity=0.224  Sum_probs=87.8

Q ss_pred             CceEeecccccc-ccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          266 PLVVTLTIHNAQ-FVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       266 p~v~~lt~~~~~-~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      +.+..++.+++. .+...+.++++ ++.+||. |....+.+.++++++.++   +.|+.+|++..   ..+++.|++.. 
T Consensus         6 ~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~---~~l~~~~~v~~-   78 (140)
T 3hz4_A            6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIATN---PWTAEKYGVQG-   78 (140)
T ss_dssp             TTEEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTC---HHHHHHHTCCE-
T ss_pred             cceEEcchHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCcC---HhHHHHCCCCc-
Confidence            457888989888 55555666555 4556676 999999999999999998   99999999864   58889999954 


Q ss_pred             CCcEEEEEccCCccccCCCCCChHHHHHHHHHHhcCcc--ccccccCc
Q 015368          343 APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL--LNQSDQIS  388 (408)
Q Consensus       343 ~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~gk~--~~kse~iP  388 (408)
                       .|.++++..+.....+.|..+.+.|.+||+.++....  ..++.++.
T Consensus        79 -~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~~~~~~~~~~~  125 (140)
T 3hz4_A           79 -TPTFKFFCHGRPVWEQVGQIYPSILKNAVRDMLQHGEECIRKSTPVG  125 (140)
T ss_dssp             -ESEEEEEETTEEEEEEESSCCHHHHHHHHHHHHHHHHHHHHTSBC--
T ss_pred             -CCEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHhcccccCcccccccC
Confidence             6788888544444467888899999999999987655  44455443

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.35  E-value=1.1e-06  Score=65.50  Aligned_cols=67  Identities=22%  Similarity=0.369  Sum_probs=49.6

Q ss_pred             hhHHHHHcCCCcEEEEEec-----CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCcCcEEEEE
Q 015368           64 KNFSEFMGKNRNVMVMFYA-----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLF  134 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a-----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~  134 (408)
                      +.++..+..+ .++| |++     +||++|++..+.+.+.      ++.+..+|++++++    +.+.+|+.++|++  |
T Consensus         8 ~~~~~~i~~~-~vvv-f~~g~~~~~~C~~C~~~~~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v--~   77 (105)
T 2yan_A            8 ERLKVLTNKA-SVML-FMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKAYSNWPTYPQL--Y   77 (105)
T ss_dssp             HHHHHHHTSS-SEEE-EESBCSSSBCTTHHHHHHHHHHHH------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--E
T ss_pred             HHHHHHhccC-CEEE-EEecCCCCCCCccHHHHHHHHHHC------CCCeEEEECCCCHHHHHHHHHHHCCCCCCeE--E
Confidence            4456666555 4554 676     9999999999988775      37788899988766    4556899999998  4


Q ss_pred             eCCeEe
Q 015368          135 VAGVRQ  140 (408)
Q Consensus       135 ~~g~~~  140 (408)
                      .+|+.+
T Consensus        78 i~g~~i   83 (105)
T 2yan_A           78 VKGELV   83 (105)
T ss_dssp             ETTEEE
T ss_pred             ECCEEE
Confidence            578543

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=98.35  E-value=2.1e-06  Score=71.05  Aligned_cols=87  Identities=13%  Similarity=0.114  Sum_probs=67.1

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--c----------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--L----------------------------------  115 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--~----------------------------------  115 (408)
                      .+++++|.|+.-.||+|+++.|.+.++.+++.+++.+..+...  .                                  
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~~~~~~~~~~~~~~   99 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   99 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCceEEEEEecCCCCCchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999999998876666654421  0                                  


Q ss_pred             ---------------------------------------cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368          116 ---------------------------------------EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       116 ---------------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i  156 (408)
                                                             +...++++||+|+||+++  ||+.+....|..+.+++.+.|
T Consensus       100 ~~~~~~~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~gv~gTPtfiI--NGky~v~~~~~~s~e~~~~~i  177 (184)
T 4dvc_A          100 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSAKSLDEYFDLV  177 (184)
T ss_dssp             CCCCSSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHHHH
T ss_pred             hhccchHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEEeeCCcCCCCHHHHHHHH
Confidence                                                   113457789999999876  886555556678888888888


Q ss_pred             HhHh
Q 015368          157 REKM  160 (408)
Q Consensus       157 ~~~~  160 (408)
                      +.++
T Consensus       178 ~~Ll  181 (184)
T 4dvc_A          178 NYLL  181 (184)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            7654

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.35  E-value=2.7e-06  Score=64.31  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=79.9

Q ss_pred             ceEeeccccccccc-cCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          267 LVVTLTIHNAQFVF-QDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       267 ~v~~lt~~~~~~~~-~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      .+..++.+++.... ..+.+.++ ++.+++. |....+.+.+++.++.++   +.|+.+|++..   +.+++.|++..  
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~---~~~~~~~~v~~--   79 (115)
T 1thx_A            8 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPN---PTTVKKYKVEG--   79 (115)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTC---HHHHHHTTCCS--
T ss_pred             ceEEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc---EEEEEEEcCCC---HHHHHHcCCCc--
Confidence            47788888887654 45555555 4556666 999999999999999988   99999998864   47889999954  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHHHHHhcC
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      .|.++++..+...+.+.|..+.+.+.+|++.++.+
T Consensus        80 ~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~l~~  114 (115)
T 1thx_A           80 VPALRLVKGEQILDSTEGVISKDKLLSFLDTHLNN  114 (115)
T ss_dssp             SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             eeEEEEEcCCEEEEEecCCCCHHHHHHHHHHHhcC
Confidence            68888874333344577888999999999998865

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.35  E-value=2.4e-06  Score=66.26  Aligned_cols=102  Identities=18%  Similarity=0.275  Sum_probs=78.3

Q ss_pred             eEeeccccccc-cccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQF-VFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~-~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +..++.+++.. +...+.+.++ ++.+|+. |......+.++++++.++   +.|+.+|++..   ..+++.|++..  .
T Consensus        24 v~~l~~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~~~~---~~l~~~~~v~~--~   95 (128)
T 2o8v_B           24 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLNIDQN---PGTAPKYGIRG--I   95 (128)
T ss_dssp             SEEECTTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT---EEEEEEETTTC---CTTSGGGTCCS--S
T ss_pred             cEecChhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCC---HHHHHHcCCCc--c
Confidence            56788888874 3445555555 5556676 899999999999999988   99999999864   47889999954  6


Q ss_pred             cEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      |.++++..+...+.+.|..+.+++.+|++++++
T Consensus        96 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  128 (128)
T 2o8v_B           96 PTLLLFKNGEVAATKVGALSKGQLKEFLDANLA  128 (128)
T ss_dssp             SEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             CEEEEEeCCEEEEEEcCCCCHHHHHHHHHHhhC
Confidence            888887433334557888899999999998763

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.34  E-value=4.8e-06  Score=62.18  Aligned_cols=102  Identities=18%  Similarity=0.246  Sum_probs=78.2

Q ss_pred             ceEeeccccccc-cccCCccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          267 LVVTLTIHNAQF-VFQDPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       267 ~v~~lt~~~~~~-~~~~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      .+.+++.+++.. +...+.+.++. +.+++. |....+.+.++++++.++   +.|+.+|++..   +.+++.||+..  
T Consensus         3 ~v~~l~~~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~v~~--   74 (108)
T 2trx_A            3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN---PGTAPKYGIRG--   74 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC---TTHHHHTTCCS--
T ss_pred             cceecchhhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC---cEEEEEECCCC---HHHHHHcCCcc--
Confidence            467788888874 44455565554 445665 899999999999999988   99999998864   47889999954  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      .|.++++..+.....+.|..+.+++.+|+++.+
T Consensus        75 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (108)
T 2trx_A           75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             cCEEEEEeCCEEEEEEecCCCHHHHHHHHHHhh
Confidence            688887743333445778889999999999876

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.34  E-value=2.1e-06  Score=74.20  Aligned_cols=98  Identities=12%  Similarity=0.154  Sum_probs=78.9

Q ss_pred             CCcccccChhHHHHHhccCCeEEEEEe--cCCCCcCHHHHHHHh-cc---CCceeEEEec--------CHhHHhhcCCC-
Q 015368          162 LGTYSITTTDEAERILTVESKLVLGFL--HDLEGMESEELAAAS-KL---HSDVNFYQTT--------SADVAEFFHIH-  226 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~~vi~f~--~~~~~~~~~~~~~~a-~~---~~~~~f~~~~--------~~~l~~~~~i~-  226 (408)
                      ..+..+ +.++++.++..+..++|.|+  ++||+ ..+.|..+| .+   ..++.|+.+.        +.+++++|+|. 
T Consensus        16 ~~v~~L-t~~nF~~vi~~~~~vlV~Fy~~ApWCg-l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~   93 (248)
T 2c0g_A           16 TGCVDL-DELSFEKTVERFPYSVVKFDIASPYGE-KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDD   93 (248)
T ss_dssp             TTCEEC-CTTTHHHHHTTSSEEEEEEEESSCCSH-HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCT
T ss_pred             CCcEEC-CHHHHHHHHhcCCCEEEEEECCCCCCc-cHHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCc
Confidence            345555 55778888888889999999  99999 888888887 44   4578888763        57899999998 


Q ss_pred             -CCCCCCeEEEeecCC-Cccccc--CCcCCHHHHHHHHhcCCC
Q 015368          227 -PKSKRPALIFLHLEA-GKATPF--RHQFTRLAIANFVTHTKH  265 (408)
Q Consensus       227 -~~~~~p~l~~~~~~~-~~~~~y--~g~~~~~~i~~fi~~~~~  265 (408)
                       .   +|++++|+ +. .....|  .|..+.++|.+||..+.-
T Consensus        94 ~~---~PTl~~F~-G~~~~~~~y~~~G~~~~~~L~~fi~~~~~  132 (248)
T 2c0g_A           94 KN---FPSIFLFK-GNADEYVQLPSHVDVTLDNLKAFVSANTP  132 (248)
T ss_dssp             TS---CCEEEEES-SSSSSEEECCTTSCCCHHHHHHHHHHHSS
T ss_pred             CC---CCeEEEEe-CCcCcceeecccCCCCHHHHHHHHHHhhc
Confidence             5   89999999 65 346788  899999999999997653

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=98.34  E-value=7.3e-07  Score=74.36  Aligned_cols=41  Identities=15%  Similarity=0.270  Sum_probs=35.1

Q ss_pred             CCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeC
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDA  113 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~  113 (408)
                      .++++|.||+.|||+|+.+.|.+   .++.+.+.+++.|..++.
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~   57 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHV   57 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEEC
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEec
Confidence            46899999999999999999987   688888877787777775

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.34  E-value=8.2e-07  Score=64.04  Aligned_cols=56  Identities=11%  Similarity=0.325  Sum_probs=45.4

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--ccHhHHHHc-CCCcCcEEEEEeCCeE
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--LEKDLAKEY-NILAYPTLYLFVAGVR  139 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--~~~~~~~~~-~i~~~Pt~~~~~~g~~  139 (408)
                      .++.|+++||++|+...+.+++.      ++.+..+|++  ...++.+.+ ++.++|+++  .+|+.
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~------~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~--~~g~~   65 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK------GVKYTDIDASTSLRQEMVQRANGRNTFPQIF--IGDYH   65 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH------TCCEEEECSCHHHHHHHHHHHHSSCCSCEEE--ETTEE
T ss_pred             eEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCHHHHHHHHHHhCCCCCcCEEE--ECCEE
Confidence            46789999999999999888764      3677888888  556788889 999999984  37853

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=98.34  E-value=1.1e-06  Score=73.03  Aligned_cols=84  Identities=14%  Similarity=0.141  Sum_probs=64.4

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--------------------c-----------------
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--------------------L-----------------  115 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--------------------~-----------------  115 (408)
                      +++++|.|++.||+||+++.|.+.++.+.+  ++.|..+.+.                    .                 
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~--~v~~~~~p~~~~~~~~~aa~a~~Aa~~q~g~~~~~~~~~~lf~a~~~~   99 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA--GTDIGKMHITFNQSAHIASMFYYAAEMQVDGAPDHAFMEDLFAATQMG   99 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH--TSCCEEEECCSSSHHHHHHHHHHHHHTTSSSSCCHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh--CCeEEEEeccCCccchHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh
Confidence            578999999999999999999999999988  3555544431                    0                 


Q ss_pred             -----------------------------------------cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHH
Q 015368          116 -----------------------------------------EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA  154 (408)
Q Consensus       116 -----------------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~  154 (408)
                                                               +...++++||+|+|++++  +|+......|..+.+.+.+
T Consensus       100 ~~~~~~~~~~~L~~~a~~~Gl~d~~~~~~~~~~~~~~~v~~~~~~a~~~gv~GtPtfvv--ng~~~v~~~Ga~~~e~~~~  177 (185)
T 3feu_A          100 EGTTLTEQQEAYSKAFTSRGLVSPYDFNEEQRDTLIKKVDNAKMLSEKSGISSVPTFVV--NGKYNVLIGGHDDPKQIAD  177 (185)
T ss_dssp             TTSCHHHHHHHHHHHHHTTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCSSHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCEEEE--CCEEEEecCCCCCHHHHHH
Confidence                                                     001235678999999986  7866566689999999998


Q ss_pred             HHHhHh
Q 015368          155 WVREKM  160 (408)
Q Consensus       155 ~i~~~~  160 (408)
                      .|+..+
T Consensus       178 ~i~~ll  183 (185)
T 3feu_A          178 TIRYLL  183 (185)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887664

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.33  E-value=3.8e-06  Score=70.17  Aligned_cols=41  Identities=12%  Similarity=0.186  Sum_probs=35.4

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA  113 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~  113 (408)
                      ++++++.||.+|||+|..+.|.+.++.+.+.+++.+..+..
T Consensus        25 a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           25 GKIEVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             CCeEEEEEECCCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            56799999999999999999999999999877777765554

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.32  E-value=1.9e-07  Score=78.26  Aligned_cols=45  Identities=9%  Similarity=0.176  Sum_probs=41.3

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCccc
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLE  116 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~  116 (408)
                      .+++++|.||+.||+||+.+.|.+   +++.+.+.+++.|..++++.+
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            357899999999999999999999   999999988999999999765

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.32  E-value=2.2e-06  Score=67.61  Aligned_cols=106  Identities=21%  Similarity=0.236  Sum_probs=69.9

Q ss_pred             CceEeeccccccccccCCccE-EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          266 PLVVTLTIHNAQFVFQDPRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       266 p~v~~lt~~~~~~~~~~~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      +.+.+++.+++......+..+ +.++.+++. |....+.+.+++.++.++   +.|+.+|++..   ..+++.|++..  
T Consensus        33 ~~v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~---~~l~~~~~v~~--  104 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVNVDEH---PGLAARYGVRS--  104 (140)
T ss_dssp             ----------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC---HHHHHHTTCCS--
T ss_pred             CccccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCCC---HHHHHHCCCCc--
Confidence            445677888877765444333 445556665 899999999999999988   99999998864   47888999953  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHHHHHhcCc
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                      .|.++++..+.....+.|..+.+++.+||+.++.|+
T Consensus       105 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~~  140 (140)
T 1v98_A          105 VPTLVLFRRGAPVATWVGASPRRVLEERLRPYLEGR  140 (140)
T ss_dssp             SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHTCC
T ss_pred             cCEEEEEeCCcEEEEEeCCCCHHHHHHHHHHHHccC
Confidence            688888754333455788889999999999999874

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.31  E-value=2.6e-06  Score=61.43  Aligned_cols=76  Identities=18%  Similarity=0.285  Sum_probs=56.9

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHc-----CCCcCcEEEEEeCCeEeEEeeCCCCHH
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY-----NILAYPTLYLFVAGVRQFQFFGERTRD  150 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~-----~i~~~Pt~~~~~~g~~~~~~~g~~~~~  150 (408)
                      -++.|..+||++|++....+++      .++.|-.+|++++++..+.+     |.+++|+++ +.+|...    +..+.+
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~------~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~-i~Dg~~l----~~~~~~   73 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTA------NRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVK-FADGSTL----TNPSAD   73 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHH------TTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEE-ETTSCEE----ESCCHH
T ss_pred             cEEEEcCCCCHhHHHHHHHHHh------cCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEE-EeCCEEE----eCCCHH
Confidence            3677999999999998877765      26888899999887654332     788999974 4677442    234788


Q ss_pred             HHHHHHHhHhCC
Q 015368          151 VISAWVREKMTL  162 (408)
Q Consensus       151 ~l~~~i~~~~~~  162 (408)
                      ++.++|.+..+-
T Consensus        74 el~~~L~el~gL   85 (92)
T 2lqo_A           74 EVKAKLVKIAGL   85 (92)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHhcCC
Confidence            999999888753

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.31  E-value=8e-06  Score=62.36  Aligned_cols=103  Identities=18%  Similarity=0.236  Sum_probs=79.7

Q ss_pred             CceEeeccccccccc-cCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcC-----CcceEEEEEEEcCCcccccchhhhc
Q 015368          266 PLVVTLTIHNAQFVF-QDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKG-----KVNMLLHVYVEMNSEGVGRRVSQEF  337 (408)
Q Consensus       266 p~v~~lt~~~~~~~~-~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~-----~~~~i~f~~vd~~~~~~~~~l~~~~  337 (408)
                      +.+..++.+++.... ..+.++++ ++.+|+. |+.....+.++++++.+     +   +.|+.+|++...    +++  
T Consensus         7 ~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~---v~~~~vd~~~~~----~~~--   77 (121)
T 2djj_A            7 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDR---VVIAKVDATAND----VPD--   77 (121)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTS---SEEEEEETTTSC----CSS--
T ss_pred             CCeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCc---eEEEEEECcccc----ccc--
Confidence            457888999988875 45555544 5667776 99999999999999987     6   999999998643    444  


Q ss_pred             cCCCCCCcEEEEEccCCc--cccCCCCCChHHHHHHHHHHhcCc
Q 015368          338 GVSGNAPRVIAYSARDAK--KYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       338 ~i~~~~~p~i~i~~~~~~--~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                      ++.  ..|.+++++.+++  ...+.|..+.++|.+||++.+...
T Consensus        78 ~v~--~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~  119 (121)
T 2djj_A           78 EIQ--GFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYK  119 (121)
T ss_dssp             CCS--SSSEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSSC
T ss_pred             ccC--cCCeEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCcC
Confidence            663  4789998887545  667889999999999999887643

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.31  E-value=2.4e-06  Score=68.04  Aligned_cols=104  Identities=22%  Similarity=0.267  Sum_probs=83.7

Q ss_pred             ceEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          267 LVVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       267 ~v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      .+..++.+++......+.++++ ++.+|+. |......++++++++.++   +.|+.+|++..   ..+++.|++..  .
T Consensus        39 ~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~---~~l~~~~~v~~--~  110 (148)
T 3p2a_A           39 EVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVNTEAE---PALSTRFRIRS--I  110 (148)
T ss_dssp             CCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC---HHHHHHTTCCS--S
T ss_pred             CceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc---eEEEEEECcCC---HHHHHHCCCCc--c
Confidence            4678889998888766666655 4556665 889999999999999988   99999998864   47889999954  6


Q ss_pred             cEEEEEccCCccccCCCCCChHHHHHHHHHHhcC
Q 015368          345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      |.++++..+.....+.|..+.++|.+||++.+..
T Consensus       111 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~  144 (148)
T 3p2a_A          111 PTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSR  144 (148)
T ss_dssp             SEEEEEETTEEEEEESSCCCHHHHHHHHHHHHHS
T ss_pred             CEEEEEECCeEEEEEeCCCCHHHHHHHHHHHhcc
Confidence            8888886444445578999999999999998765

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.31  E-value=2e-06  Score=64.35  Aligned_cols=103  Identities=17%  Similarity=0.146  Sum_probs=79.3

Q ss_pred             eEeeccccccccccCCccEEEEEe-eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCc
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWLFA-PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR  345 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~f~-~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p  345 (408)
                      +.+++.+++......+.+.++.|. +++. |....+.+.+++.++.++   +.|+.+|++..   ..+++.|++..  .|
T Consensus         3 v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~v~~--~P   74 (109)
T 2yzu_A            3 PIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVDEN---PKTAMRYRVMS--IP   74 (109)
T ss_dssp             CEECCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTC---HHHHHHTTCCS--SS
T ss_pred             ceEccHhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc---eEEEEEECCCC---HhHHHhCCCCc--CC
Confidence            567888888877766666655544 5555 889999999999999988   99999998764   47889999954  68


Q ss_pred             EEEEEccCCccccCCCCCChHHHHHHHHHHhcC
Q 015368          346 VIAYSARDAKKYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       346 ~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      .++++..+.....+.|..+.+++.+|+++.+..
T Consensus        75 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           75 TVILFKDGQPVEVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHTTC--
T ss_pred             EEEEEeCCcEeeeEeCCCCHHHHHHHHHHHhhh
Confidence            888874333344577888999999999988764

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.31  E-value=2.4e-06  Score=66.99  Aligned_cols=103  Identities=21%  Similarity=0.308  Sum_probs=78.9

Q ss_pred             eEeecccccccccc------------CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccch
Q 015368          268 VVTLTIHNAQFVFQ------------DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRV  333 (408)
Q Consensus       268 v~~lt~~~~~~~~~------------~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l  333 (408)
                      +..++.+++.....            .+.+.++ ++.+||. |......+.+++.++.++   +.|+.+|++..   ..+
T Consensus        11 v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~---~~l   84 (136)
T 2l5l_A           11 VIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTEKE---QEL   84 (136)
T ss_dssp             EEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC---HHH
T ss_pred             eEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---EEEEEEeCCCC---HHH
Confidence            45556565554332            3345554 5556676 999999999999999988   99999998864   478


Q ss_pred             hhhccCCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhcC
Q 015368          334 SQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       334 ~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      ++.|++..  .|.+++++.+|+...+.|..+.++|.+||++.+..
T Consensus        85 ~~~~~v~~--~Pt~~~~~~~G~~~~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           85 AGAFGIRS--IPSILFIPMEGKPEMAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             HHHTTCCS--SCEEEEECSSSCCEEEESCCCHHHHHHHHHHHHTS
T ss_pred             HHHcCCCC--CCEEEEECCCCcEEEEeCCCCHHHHHHHHHHHhhc
Confidence            89999954  78999987666655677889999999999998776

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.30  E-value=2.4e-06  Score=64.53  Aligned_cols=102  Identities=16%  Similarity=0.173  Sum_probs=79.6

Q ss_pred             eEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCc
Q 015368          268 VVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR  345 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p  345 (408)
                      +.+++.+++.... .+.+.++ ++.+++. |......+.++++++.++   +.|+.+|++..   ..+++.||+..  .|
T Consensus         3 v~~l~~~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~---~~l~~~~~v~~--~P   73 (112)
T 2voc_A            3 IVKATDQSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDEN---QETAGKYGVMS--IP   73 (112)
T ss_dssp             CEECCTTTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTT---CEEEEEETTTC---CSHHHHTTCCS--BS
T ss_pred             eEEecHHHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---cEEEEEECCCC---HHHHHHcCCCc--cc
Confidence            4678888888777 5555555 4556666 999999999999999988   99999998864   47889999953  68


Q ss_pred             EEEEEccCCccccCCCCCChHHHHHHHHHHhcC
Q 015368          346 VIAYSARDAKKYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       346 ~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      .++++..+...+.+.|..+.+++.+|+++.+..
T Consensus        74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~  106 (112)
T 2voc_A           74 TLLVLKDGEVVETSVGFKPKEALQELVNKHLLE  106 (112)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHTTSCS
T ss_pred             EEEEEeCCEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            888874333345678889999999999987654

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.29  E-value=6.5e-06  Score=67.32  Aligned_cols=90  Identities=9%  Similarity=0.064  Sum_probs=71.7

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCcccH---------------hHHH---HcCCCcCc
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLEK---------------DLAK---EYNILAYP  129 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~~---------------~~~~---~~~i~~~P  129 (408)
                      +++|+++|+++++||..|..+....   +.+.+.++.++.+...|++...               .++.   .+++.++|
T Consensus        53 ~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P  132 (178)
T 2ec4_A           53 RDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFP  132 (178)
T ss_dssp             TTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCS
T ss_pred             hhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCC
Confidence            4678999999999999999987544   4556666668999999988654               3443   48999999


Q ss_pred             EEEEEe-C---CeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          130 TLYLFV-A---GVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       130 t~~~~~-~---g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++.++. .   ++++.+..|..+++++.+.+.+.+
T Consensus       133 ~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~  167 (178)
T 2ec4_A          133 LFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAM  167 (178)
T ss_dssp             EEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence            999996 3   356788999999999988886654

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.28  E-value=3.4e-06  Score=62.59  Aligned_cols=72  Identities=15%  Similarity=0.193  Sum_probs=50.4

Q ss_pred             CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-----HhHH----HHcCCCcCcEEEEEeCCeEeEEee
Q 015368           74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-----KDLA----KEYNILAYPTLYLFVAGVRQFQFF  144 (408)
Q Consensus        74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-----~~~~----~~~~i~~~Pt~~~~~~g~~~~~~~  144 (408)
                      +..++.|+++||++|++..+.+++..      +.+-.+|++..     .++.    +..++.++|++++ ++|    ++.
T Consensus        21 ~~~v~ly~~~~Cp~C~~ak~~L~~~~------i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i-~~~----~~i   89 (103)
T 3nzn_A           21 RGKVIMYGLSTCVWCKKTKKLLTDLG------VDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII-NDE----KAI   89 (103)
T ss_dssp             CSCEEEEECSSCHHHHHHHHHHHHHT------BCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE-TTT----EEE
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcC------CCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE-CCC----EEE
Confidence            44577799999999999999988753      44555666531     2232    3468999999865 333    356


Q ss_pred             CCCCHHHHHHHH
Q 015368          145 GERTRDVISAWV  156 (408)
Q Consensus       145 g~~~~~~l~~~i  156 (408)
                      |..+.+.|.++|
T Consensus        90 gg~~~~~l~~~L  101 (103)
T 3nzn_A           90 VGFKEKEIRESL  101 (103)
T ss_dssp             ESCCHHHHHHHT
T ss_pred             EcCCHHHHHHHh
Confidence            778888888765

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.28  E-value=9.5e-06  Score=63.13  Aligned_cols=108  Identities=16%  Similarity=0.243  Sum_probs=82.4

Q ss_pred             CCceEeeccccccccccC-CccEEEE-EeeCCC-chHHHHHHHHHHHHhc--CCcceEEEEEEEcCCcccccchhhhccC
Q 015368          265 HPLVVTLTIHNAQFVFQD-PRKQLWL-FAPAYG-SDKVILTFEEVAKALK--GKVNMLLHVYVEMNSEGVGRRVSQEFGV  339 (408)
Q Consensus       265 ~p~v~~lt~~~~~~~~~~-~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~--~~~~~i~f~~vd~~~~~~~~~l~~~~~i  339 (408)
                      .+.+..++.+++...... +.++++. +.+||. |....+.|.+++.++.  ++   +.|+.+|++..   ..+++.|++
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~---~~~~~vd~~~~---~~~~~~~~v   79 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKD---LVIAKMDATAN---DITNDQYKV   79 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSS---EEEEEECTTTS---CCCCSSCCC
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCC---EEEEEecCCcC---HHHHhhcCC
Confidence            356788999999887754 5565554 456676 9999999999999998  45   99999998764   466778898


Q ss_pred             CCCCCcEEEEEccCCc--cccCC-CCCChHHHHHHHHHHhcCcc
Q 015368          340 SGNAPRVIAYSARDAK--KYVLN-GELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~~--~y~~~-~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      ..  .|.+++++.++.  ...+. |..+.++|.+||+..+....
T Consensus        80 ~~--~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~~~~  121 (133)
T 2dj3_A           80 EG--FPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHATKRS  121 (133)
T ss_dssp             SS--SSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSSSCS
T ss_pred             Cc--CCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhccccc
Confidence            54  688888876332  23456 56899999999999987654

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.27  E-value=2.4e-06  Score=65.10  Aligned_cols=107  Identities=17%  Similarity=0.194  Sum_probs=81.7

Q ss_pred             ceEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          267 LVVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       267 ~v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      .+..++.+++......+.+.++ ++.+++. |......+.++++++++...++.|+.+|++..   ..+++.+++..  .
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~v~~--~   82 (120)
T 1mek_A            8 HVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE---SDLAQQYGVRG--Y   82 (120)
T ss_dssp             TEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC---CSSHHHHTCCS--S
T ss_pred             CcEEechhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCC---HHHHHHCCCCc--c
Confidence            3678889998888777766555 4556676 89999999999999874222399999998764   47889999954  6


Q ss_pred             cEEEEEccCCcc--ccCCCCCChHHHHHHHHHHhcC
Q 015368          345 RVIAYSARDAKK--YVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       345 p~i~i~~~~~~~--y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      |.++++..+...  ..+.|..+.+.+.+|+++.++.
T Consensus        83 Pt~~~~~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~  118 (120)
T 1mek_A           83 PTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             SEEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             cEEEEEeCCCcCCcccccCccCHHHHHHHHHhccCC
Confidence            888887543322  5678889999999999988765

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.27  E-value=2.5e-06  Score=63.37  Aligned_cols=101  Identities=20%  Similarity=0.160  Sum_probs=78.3

Q ss_pred             eEeeccccccccccCCccEEEEE-eeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCc
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWLF-APAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR  345 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~f-~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p  345 (408)
                      +.+++.+++......+.+.++.| .+++. |....+.+.++++++.++   +.|+.+|++..   ..+++.+|+..  .|
T Consensus         2 v~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~---~~~~~~~~v~~--~P   73 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDEN---PETTSQFGIMS--IP   73 (105)
T ss_dssp             CEEECTTTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT---CEEEEEETTTC---HHHHHHTTCCS--SS
T ss_pred             ceeccHHhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECcCC---HHHHHHcCCcc--cc
Confidence            46788888887777666665554 45665 899999999999999988   99999998764   47889999954  68


Q ss_pred             EEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          346 VIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       346 ~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      .++++..+.....+.|..+.+.+.+|+++++
T Consensus        74 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  104 (105)
T 1nsw_A           74 TLILFKGGRPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHTTTTT
T ss_pred             EEEEEeCCeEEEEEecCCCHHHHHHHHHHHh
Confidence            8887743333445778888999999998765

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=98.27  E-value=3.1e-06  Score=59.80  Aligned_cols=68  Identities=9%  Similarity=0.146  Sum_probs=48.9

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH----hHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI  152 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l  152 (408)
                      ++.|+++||++|+...+.+++.      ++.+..+|++.++    ++.+.+++.++|+++  .+|+.+   .|   .+.|
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~--~~g~~i---~g---~~~i   68 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIF--IDAQHI---GG---YDDL   68 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEE--ETTEEE---ES---HHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHC------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE---eC---HHHH
Confidence            5679999999999999888764      3666777777643    356788999999984  478543   22   3566


Q ss_pred             HHHHHh
Q 015368          153 SAWVRE  158 (408)
Q Consensus       153 ~~~i~~  158 (408)
                      .++++.
T Consensus        69 ~~~~~~   74 (82)
T 1fov_A           69 YALDAR   74 (82)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            666543

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.26  E-value=2.5e-06  Score=68.56  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=80.0

Q ss_pred             eEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCc
Q 015368          268 VVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR  345 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p  345 (408)
                      +.+++..++......+.++++ ++.+|+. |......|.++++++.++   +.|+.+|++..   +.+.+.||+..  .|
T Consensus        49 ~~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~---~~l~~~~~i~~--~P  120 (155)
T 2ppt_A           49 VAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAH---PAVAGRHRIQG--IP  120 (155)
T ss_dssp             EEECCHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTS---THHHHHTTCCS--SS
T ss_pred             CccCCHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCcc---HHHHHHcCCCc--CC
Confidence            567787888777655556555 4555665 899999999999999988   99999999864   47889999954  68


Q ss_pred             EEEEEccCCccccCCCCCChHHHHHHHHHHhcCc
Q 015368          346 VIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       346 ~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                      .++++..+.....+.|..+.++|.+|+++.+...
T Consensus       121 t~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~  154 (155)
T 2ppt_A          121 AFILFHKGRELARAAGARPASELVGFVRGKLGAR  154 (155)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHC--
T ss_pred             EEEEEeCCeEEEEecCCCCHHHHHHHHHHHhccC
Confidence            8888754333445788889999999999988653

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.25  E-value=2.8e-06  Score=63.37  Aligned_cols=102  Identities=21%  Similarity=0.227  Sum_probs=77.7

Q ss_pred             eEeeccccccccc-cCCccEEEEE-eeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVF-QDPRKQLWLF-APAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~-~~~~~~~i~f-~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +..++.+++.... ..+.+.++.| .+++. |....+.+.+++.++.++   +.|+.+|++..   +.+++.||+..  .
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~v~~--~   74 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDES---PNVASEYGIRS--I   74 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC---HHHHHHHTCCS--S
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC---HHHHHHCCCCc--C
Confidence            4567778877644 4455665554 45665 899999999999999988   99999998764   47889999953  6


Q ss_pred             cEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      |.++++..+...+.+.|..+.+++.++++++++
T Consensus        75 Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  107 (107)
T 1dby_A           75 PTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             CEEEEESSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             CEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence            888887544444557888899999999998763

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.25  E-value=7.7e-06  Score=60.84  Aligned_cols=101  Identities=14%  Similarity=0.107  Sum_probs=76.9

Q ss_pred             ceEeeccccccccc-cCCccEEEEEe-eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          267 LVVTLTIHNAQFVF-QDPRKQLWLFA-PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       267 ~v~~lt~~~~~~~~-~~~~~~~i~f~-~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      .+..++.+++.... ..+.+.++.|. +++. |......+.++++++.++   +.|+.+|++..   +.+++.||+..  
T Consensus         3 ~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~v~~--   74 (107)
T 2i4a_A            3 HTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKVNIDDN---PETPNAYQVRS--   74 (107)
T ss_dssp             CEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTS---EEEEEEETTTC---CHHHHHTTCCS--
T ss_pred             ceeecchhhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCc---EEEEEEECCCC---HHHHHhcCCCc--
Confidence            36778888887544 45556655544 5565 899999999999999988   99999998764   47889999954  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHHHHH
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~  375 (408)
                      .|.++++..+.....+.|..+.+.+.+|++++
T Consensus        75 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~  106 (107)
T 2i4a_A           75 IPTLMLVRDGKVIDKKVGALPKSQLKAWVESA  106 (107)
T ss_dssp             SSEEEEEETTEEEEEEESCCCHHHHHHHHHHT
T ss_pred             cCEEEEEeCCEEEEEecCCCCHHHHHHHHHhc
Confidence            68888874333344577888999999999875

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.25  E-value=3.7e-06  Score=65.49  Aligned_cols=105  Identities=18%  Similarity=0.218  Sum_probs=82.2

Q ss_pred             ceEeeccccccccc-cCCccEEE-EEeeCCC-chHHHHHHHHHHHHhc----CCcceEEEEEEEcCCcccccchhhhccC
Q 015368          267 LVVTLTIHNAQFVF-QDPRKQLW-LFAPAYG-SDKVILTFEEVAKALK----GKVNMLLHVYVEMNSEGVGRRVSQEFGV  339 (408)
Q Consensus       267 ~v~~lt~~~~~~~~-~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~----~~~~~i~f~~vd~~~~~~~~~l~~~~~i  339 (408)
                      .+..++.+++.... ..+.++++ ++.+||. |......+.++++++.    ++   +.|+.+|++..   ..+++.|++
T Consensus         8 ~v~~l~~~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~---~~l~~~~~v   81 (133)
T 1x5d_A            8 DVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGK---VKLAAVDATVN---QVLASRYGI   81 (133)
T ss_dssp             SCEECCTTHHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTS---EEEEEEETTTC---CHHHHHHTC
T ss_pred             cCEEcCHhhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCc---EEEEEEECCCC---HHHHHhCCC
Confidence            46788888888754 44555555 4556666 8999999999999998    77   99999999864   578899999


Q ss_pred             CCCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhcCc
Q 015368          340 SGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                      .  ..|.+++++.+.....+.|..+.+++.+|+++.+...
T Consensus        82 ~--~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~~~~~  119 (133)
T 1x5d_A           82 R--GFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDN  119 (133)
T ss_dssp             C--SSSEEEEEETTEEEEEECSCCSHHHHHHHHHHHHHHH
T ss_pred             C--eeCeEEEEeCCCceEEecCCCCHHHHHHHHHHHhhcc
Confidence            5  3688888876444556788899999999999988653

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=98.24  E-value=2.9e-06  Score=76.78  Aligned_cols=100  Identities=16%  Similarity=0.158  Sum_probs=72.5

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc---------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---------------------  115 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~---------------------  115 (408)
                      +.+.+++++...--.||+++++|| +.||+.|..+++.|.+   ....++.++.|++|.                     
T Consensus         9 l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~---~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~   85 (322)
T 4eo3_A            9 LLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR---ENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDP   85 (322)
T ss_dssp             EEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH---SCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECT
T ss_pred             EECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH---HhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcC
Confidence            344444444433346899999999 5799999999888854   222378888888753                     


Q ss_pred             cHhHHHHcCCC----cCcEEEEEe-CCeEeEEeeCC---CCHHHHHHHHHhHh
Q 015368          116 EKDLAKEYNIL----AYPTLYLFV-AGVRQFQFFGE---RTRDVISAWVREKM  160 (408)
Q Consensus       116 ~~~~~~~~~i~----~~Pt~~~~~-~g~~~~~~~g~---~~~~~l~~~i~~~~  160 (408)
                      +.++++.||+.    .+|++++++ +|++...+.+.   ...+++.+++++..
T Consensus        86 ~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~  138 (322)
T 4eo3_A           86 EGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLI  138 (322)
T ss_dssp             TCHHHHHTTCEETTEECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHH
T ss_pred             chHHHHhcCCCCCCcCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhc
Confidence            35678899984    478999998 99887777654   45788888888765

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.24  E-value=7.2e-06  Score=62.26  Aligned_cols=96  Identities=17%  Similarity=0.188  Sum_probs=73.2

Q ss_pred             CCcccccChhHHHHHhc--cCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCe
Q 015368          162 LGTYSITTTDEAERILT--VESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPA  233 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~--~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~  233 (408)
                      +......+.+++++.+.  .++.++|.|+.+||.++..   .+..+++...++.|+.+   .+.+++++|++.   ++|+
T Consensus        11 ~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~---~~Pt   87 (116)
T 3qfa_C           11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK---SMPT   87 (116)
T ss_dssp             -CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCC---SSSE
T ss_pred             CcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCc---cccE
Confidence            34456668899999997  7888999999999998544   45566644444777765   567899999999   5999


Q ss_pred             EEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          234 LIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       234 l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      +++++.+ .....+.|. +.+.|.+||++
T Consensus        88 ~~~~~~G-~~~~~~~G~-~~~~l~~~l~~  114 (116)
T 3qfa_C           88 FQFFKKG-QKVGEFSGA-NKEKLEATINE  114 (116)
T ss_dssp             EEEESSS-SEEEEEESC-CHHHHHHHHHH
T ss_pred             EEEEeCC-eEEEEEcCC-CHHHHHHHHHH
Confidence            9999644 345567888 89999999975

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.24  E-value=3.3e-06  Score=62.62  Aligned_cols=101  Identities=15%  Similarity=0.228  Sum_probs=76.5

Q ss_pred             eEeeccccccccc-cCCccEEEEE-eeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVF-QDPRKQLWLF-APAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~-~~~~~~~i~f-~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +..++.+++.... ..+.+.++.| .+++. |....+.+.+++++++++   +.|+.+|++..   +.+++.+++..  .
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~v~~--~   73 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEA---PGIATQYNIRS--I   73 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC---HHHHHHTTCCS--S
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc---eEEEEEcCcch---HHHHHhCCCCc--c
Confidence            4567888888744 3445665554 45565 899999999999999988   99999998764   47889999954  6


Q ss_pred             cEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      |.++++..+.....+.|..+.+.+.+|+++++
T Consensus        74 Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           74 PTVLFFKNGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             SEEEEEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             cEEEEEeCCeEEEEEecCCCHHHHHHHHHhhC
Confidence            88887754333445678889999999998764

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.23  E-value=3.6e-06  Score=61.87  Aligned_cols=59  Identities=5%  Similarity=0.076  Sum_probs=45.1

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHH----c-CCCcCcEEEEEeCCeE
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE----Y-NILAYPTLYLFVAGVR  139 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~----~-~i~~~Pt~~~~~~g~~  139 (408)
                      .+.-++.|+++||++|++..+.+++.      ++.+..+|++.+++..+.    . +..++|++  |.+|+.
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~------~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~i--fi~g~~   77 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRK------GVEFQEYCIDGDNEAREAMAARANGKRSLPQI--FIDDQH   77 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHH------TCCCEEEECTTCHHHHHHHHHHTTTCCCSCEE--EETTEE
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHC------CCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEE--EECCEE
Confidence            34567779999999999999988865      466778888887665443    3 89999987  457853

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.22  E-value=3.5e-06  Score=65.25  Aligned_cols=100  Identities=16%  Similarity=0.140  Sum_probs=81.5

Q ss_pred             EeeccccccccccCCc-cEEEEEee-CC--C-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          269 VTLTIHNAQFVFQDPR-KQLWLFAP-AY--G-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       269 ~~lt~~~~~~~~~~~~-~~~i~f~~-~~--~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      ..+|.++|.....+.. |+++.|.. ++  . |+....++.++|.+|.++   +.|+.+|.+.   ++.+...||+..  
T Consensus        18 ~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvDe---~~~la~~ygV~s--   89 (137)
T 2qsi_A           18 TLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEA---ERGLMARFGVAV--   89 (137)
T ss_dssp             EEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGGG---HHHHHHHHTCCS--
T ss_pred             cccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECCC---CHHHHHHcCCcc--
Confidence            3778888887665555 77776665 77  4 889999999999999999   9999999876   568999999954  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      .|.++++..+...-.+.|..+.+++.++|+.++
T Consensus        90 iPTlilFkdG~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           90 CPSLAVVQPERTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             SSEEEEEECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence            789998876444555788888999999999887

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.22  E-value=4e-06  Score=67.25  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=77.8

Q ss_pred             CCCcccccChhHHHHHhcc--CCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCC
Q 015368          161 TLGTYSITTTDEAERILTV--ESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRP  232 (408)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~--~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p  232 (408)
                      ...+..+.+.++++..+..  ++.++|.|+.+||.++..   .+..+++..+++.|+.+   .+.+++++|++.   ++|
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~~~~~v~---~~P   87 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEIS---SVP   87 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCC---SSS
T ss_pred             cCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHHHHcCCC---CCC
Confidence            3567788888999999987  788999999999998544   45555544467888776   467799999998   599


Q ss_pred             eEEEeecCCCcccccCCcCCHHHHHHHHhcCCCC-------ceEeecccccccc
Q 015368          233 ALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHP-------LVVTLTIHNAQFV  279 (408)
Q Consensus       233 ~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p-------~v~~lt~~~~~~~  279 (408)
                      ++++|+. +.....+.| .+.++|.+||....-.       .+..++..++..+
T Consensus        88 t~~~~~~-G~~~~~~~G-~~~~~l~~~i~~~l~~~~~~~~~~~~~l~~~~f~~~  139 (153)
T 2wz9_A           88 TFLFFKN-SQKIDRLDG-AHAPELTKKVQRHASSGSFLPSAKVKVDTDPNSSSV  139 (153)
T ss_dssp             EEEEEET-TEEEEEEES-SCHHHHHHHHHHHSCTTSSCSCCCCCCC--------
T ss_pred             EEEEEEC-CEEEEEEeC-CCHHHHHHHHHHHhccccCCCccccccCCCCChhhH
Confidence            9999993 334445667 4778899999864322       3445555554443

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.22  E-value=6.3e-06  Score=64.06  Aligned_cols=103  Identities=10%  Similarity=0.045  Sum_probs=77.3

Q ss_pred             HhHhCCCcccccChhHHHHHhccCCeEEEEEecCC--CCc---CHHHHHHHh-ccCCc-eeEEEe---cCHhHHhhcCCC
Q 015368          157 REKMTLGTYSITTTDEAERILTVESKLVLGFLHDL--EGM---ESEELAAAS-KLHSD-VNFYQT---TSADVAEFFHIH  226 (408)
Q Consensus       157 ~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~--~~~---~~~~~~~~a-~~~~~-~~f~~~---~~~~l~~~~~i~  226 (408)
                      ++........+ +.++++..+.+..+++|.|+.+|  |++   ..+.+.+++ ++.++ +.|+.+   .+++++.+|+|.
T Consensus        12 ~rl~~~g~~~~-t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~   90 (140)
T 2qgv_A           12 QRMLARGWTPV-SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAF   90 (140)
T ss_dssp             HHHHHTTCEEC-CHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCC
T ss_pred             HHHHhcCCccC-CHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCc
Confidence            33333355566 56888888877777888888888  555   566677777 67778 999987   567899999999


Q ss_pred             CCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCC
Q 015368          227 PKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       227 ~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                         +.|++++|+++. ......|-.+.+.+.+||+...
T Consensus        91 ---sIPTlilFk~G~-~v~~~~G~~~k~~l~~~i~~~l  124 (140)
T 2qgv_A           91 ---RFPATLVFTGGN-YRGVLNGIHPWAELINLMRGLV  124 (140)
T ss_dssp             ---SSSEEEEEETTE-EEEEEESCCCHHHHHHHHHHHH
T ss_pred             ---cCCEEEEEECCE-EEEEEecCCCHHHHHHHHHHHh
Confidence               599999999764 4456678888889999997543

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.22  E-value=3e-06  Score=64.73  Aligned_cols=103  Identities=12%  Similarity=0.091  Sum_probs=78.7

Q ss_pred             CceEeeccccccccc-cCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          266 PLVVTLTIHNAQFVF-QDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       266 p~v~~lt~~~~~~~~-~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      +.+..++.+++.... ..+.+.++ ++.+++. |......+.++++++.++   +.|+.+|++..   ..+++.|++.. 
T Consensus        13 ~~~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~---v~~~~vd~d~~---~~l~~~~~v~~-   85 (119)
T 1w4v_A           13 TTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDDH---TDLAIEYEVSA-   85 (119)
T ss_dssp             SEEECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---SEEEEEETTTT---HHHHHHTTCCS-
T ss_pred             eEEEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCCCC---HHHHHHcCCCc-
Confidence            457778888887643 44555555 4555666 899999999999999888   99999998864   47889999954 


Q ss_pred             CCcEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          343 APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       343 ~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                       .|.++++..+.....+.|..+.+.+.+|+++++
T Consensus        86 -~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l  118 (119)
T 1w4v_A           86 -VPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLI  118 (119)
T ss_dssp             -SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             -ccEEEEEeCCcEEEEEcCCCCHHHHHHHHHHHh
Confidence             688888743333445778889999999999876

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.22  E-value=2e-06  Score=65.92  Aligned_cols=103  Identities=20%  Similarity=0.191  Sum_probs=79.3

Q ss_pred             eEeecccccc-ccccCCccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQ-FVFQDPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~-~~~~~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +..++.+++. .+...+.+.++. +.+|+. |......+.++++++.++   +.|+.+|++..   +.+++.|++..  .
T Consensus         5 v~~l~~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~---~~~~~~~~v~~--~   76 (122)
T 3aps_A            5 SIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDCQAY---PQTCQKAGIKA--Y   76 (122)
T ss_dssp             SEECCHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC---HHHHHHTTCCS--S
T ss_pred             hhcCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCcCC---HHHHHHcCCCc--c
Confidence            5678888884 455555565554 556666 899999999999999988   99999999864   47889999954  6


Q ss_pred             cEEEEEccCCccccCCCC----CChHHHHHHHHHHhcC
Q 015368          345 RVIAYSARDAKKYVLNGE----LTLSSIKSFGEEFLED  378 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~----~~~~~i~~Fi~~~~~g  378 (408)
                      |.+++++.++....+.|.    .+.+.|.+|++..++.
T Consensus        77 Pt~~~~~~~~~~~~~~g~~~~~~~~~~l~~~l~~~l~~  114 (122)
T 3aps_A           77 PSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET  114 (122)
T ss_dssp             SEEEEEEEEGGGTEEEEEEECCSCHHHHHHHHHHHHHC
T ss_pred             ceEEEEeCCCccceeeccccCcCCHHHHHHHHHHHHHh
Confidence            888888764544445553    7899999999998864

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.21  E-value=4.8e-06  Score=62.67  Aligned_cols=103  Identities=15%  Similarity=0.181  Sum_probs=78.8

Q ss_pred             ceEeeccccccc-cccCCccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          267 LVVTLTIHNAQF-VFQDPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       267 ~v~~lt~~~~~~-~~~~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      .+..++.+++.. +...+.+.++. +.+++. |....+.+.+++.++.++   +.|+.+|++..   ..+++.||+..  
T Consensus         6 ~v~~l~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~v~~--   77 (112)
T 1t00_A            6 TLKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDEN---PGTAAKYGVMS--   77 (112)
T ss_dssp             CCEEECTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC---HHHHHHTTCCS--
T ss_pred             eEEecchhhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC---eEEEEEEcCCC---HHHHHhCCCCc--
Confidence            357788888765 34455565554 455666 899999999999999888   99999998864   47889999954  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .|.++++..+...+.+.|..+.+.+.+|++++++
T Consensus        78 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           78 IPTLNVYQGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             SSEEEEEETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             ccEEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence            6788877543344557888889999999998875

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=98.21  E-value=3.1e-06  Score=64.04  Aligned_cols=67  Identities=16%  Similarity=0.362  Sum_probs=46.2

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc----Hh----HHHHcCCCcCcEEEEEe
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KD----LAKEYNILAYPTLYLFV  135 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~----~~----~~~~~~i~~~Pt~~~~~  135 (408)
                      +.++..+..++  ++.|+++||++|++..+.+++.      ++.+..+|++..    ++    +.+..|..++|++  |.
T Consensus        10 ~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi   79 (113)
T 3rhb_A           10 ESIRKTVTENT--VVIYSKTWCSYCTEVKTLFKRL------GVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FV   79 (113)
T ss_dssp             HHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHHT------TCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EE
T ss_pred             HHHHHHHhcCC--EEEEECCCChhHHHHHHHHHHc------CCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EE
Confidence            34455555555  6669999999999999888764      344556666542    22    5556799999998  45


Q ss_pred             CCeEe
Q 015368          136 AGVRQ  140 (408)
Q Consensus       136 ~g~~~  140 (408)
                      +|+.+
T Consensus        80 ~g~~i   84 (113)
T 3rhb_A           80 CGKHI   84 (113)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            88543

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.21  E-value=3.9e-06  Score=66.03  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=84.2

Q ss_pred             ceEeeccccccccccCCccEEEEEe-eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          267 LVVTLTIHNAQFVFQDPRKQLWLFA-PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       267 ~v~~lt~~~~~~~~~~~~~~~i~f~-~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      .+..++.+++......+.++++.|. +||. |+.....+.++++++.++..++.|+.+|++..   ..+++.|++.  ..
T Consensus        18 ~v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~v~--~~   92 (140)
T 2dj1_A           18 GVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA---SMLASKFDVS--GY   92 (140)
T ss_dssp             TEEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTC---HHHHHHTTCC--SS
T ss_pred             CCEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCccc---HHHHHHCCCC--cc
Confidence            4678888898887777666655554 5665 88999999999999976322389999998764   4788999995  36


Q ss_pred             cEEEEEccCCccccCCCCCChHHHHHHHHHHhcCcc
Q 015368          345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      |.++++. +|+...+.|..+.+.|.+|+++.+....
T Consensus        93 Pt~~~~~-~G~~~~~~g~~~~~~l~~~l~~~~~~~~  127 (140)
T 2dj1_A           93 PTIKILK-KGQAVDYDGSRTQEEIVAKVREVSQPDW  127 (140)
T ss_dssp             SEEEEEE-TTEEEECCSCCCHHHHHHHHHHHHSSSC
T ss_pred             CeEEEEE-CCcEEEcCCCCCHHHHHHHHHHhcCCCC
Confidence            8888875 4556668899999999999999987654

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.20  E-value=5.4e-06  Score=61.51  Aligned_cols=94  Identities=17%  Similarity=0.193  Sum_probs=72.3

Q ss_pred             cccccChhHHHHHhc--cCCeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEE
Q 015368          164 TYSITTTDEAERILT--VESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI  235 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~--~~~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~  235 (408)
                      +..+.+.++++..+.  .++.+++.|+++||.++.   +.+..+++...++.|+.+   .+.++++++++.   +.|+++
T Consensus         2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~---~~Pt~~   78 (105)
T 3m9j_A            2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVK---SMPTFQ   78 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCC---BSSEEE
T ss_pred             eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCC---cCcEEE
Confidence            356788999999997  678899999999998754   345555544445777765   567899999998   599999


Q ss_pred             EeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          236 FLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       236 ~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      +++.+ .....+.|. +.+++.+|+++
T Consensus        79 ~~~~g-~~~~~~~g~-~~~~l~~~l~~  103 (105)
T 3m9j_A           79 FFKKG-QKVGEFSGA-NKEKLEATINE  103 (105)
T ss_dssp             EEETT-EEEEEEESS-CHHHHHHHHHH
T ss_pred             EEECC-eEEEEEeCC-CHHHHHHHHHH
Confidence            99654 345567888 88999999875

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.18  E-value=8.1e-06  Score=62.93  Aligned_cols=94  Identities=9%  Similarity=0.063  Sum_probs=72.9

Q ss_pred             cccccChhHHHHHhccCCeEEEEEecCCCCc---CHHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEe
Q 015368          164 TYSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL  237 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~  237 (408)
                      +..+++.++++..+..++.++|.|+++||.+   ..+.+..+++..+++.|+.+   .+.+++++|++.   +.|+++++
T Consensus        21 v~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~---~~Pt~~i~   97 (125)
T 1r26_A           21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVL---QLPTFIIA   97 (125)
T ss_dssp             CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCC---SSSEEEEE
T ss_pred             eEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCC---cccEEEEE
Confidence            5678887999999988889999999999987   45556666643356888765   467799999998   59999999


Q ss_pred             ecCCCcccccCCcCCHHHHHHHHhc
Q 015368          238 HLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       238 ~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      +.+ .....+.| .+.++|.+||..
T Consensus        98 ~~G-~~~~~~~G-~~~~~l~~~l~~  120 (125)
T 1r26_A           98 RSG-KMLGHVIG-ANPGMLRQKLRD  120 (125)
T ss_dssp             ETT-EEEEEEES-SCHHHHHHHHHH
T ss_pred             eCC-eEEEEEeC-CCHHHHHHHHHH
Confidence            644 24456778 688899999875

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.18  E-value=4.7e-06  Score=62.51  Aligned_cols=104  Identities=20%  Similarity=0.203  Sum_probs=78.2

Q ss_pred             ceEeeccccccccccCCccEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCc
Q 015368          267 LVVTLTIHNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR  345 (408)
Q Consensus       267 ~v~~lt~~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p  345 (408)
                      .+..+|.+++......+..++.++.+++. |......+.++++++....+++.|+.+|++..   ..+++.|++..  .|
T Consensus         6 ~v~~l~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~---~~l~~~~~v~~--~P   80 (111)
T 3uvt_A            6 TVLALTENNFDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE---RNICSKYSVRG--YP   80 (111)
T ss_dssp             CSEECCTTTHHHHHHSSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTC---HHHHHHTTCCS--SS
T ss_pred             cceEcChhhHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecccc---HhHHHhcCCCc--cc
Confidence            46788999988887743234445566776 89999999999998863212399999998864   47889999954  67


Q ss_pred             EEEEEccCCccccCCCCCChHHHHHHHHHH
Q 015368          346 VIAYSARDAKKYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       346 ~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~  375 (408)
                      .++++..+.....+.|..+.+.|.+|+++.
T Consensus        81 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           81 TLLLFRGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             EEEEEETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             EEEEEeCCcEEEeccCCcCHHHHHHHHHhc
Confidence            888886544445678889999999999863

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=98.18  E-value=9.9e-06  Score=58.11  Aligned_cols=74  Identities=14%  Similarity=0.165  Sum_probs=52.5

Q ss_pred             cEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc----HhHHHHcCC-----CcCcEEEEEeCCeEeEEeeC
Q 015368           75 NVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNI-----LAYPTLYLFVAGVRQFQFFG  145 (408)
Q Consensus        75 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i-----~~~Pt~~~~~~g~~~~~~~g  145 (408)
                      ..++.|+++||++|++..+.+++..    -.+.+..||.+++    .++.+.+|.     .++|++++  +|+.+    |
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~----i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i--~g~~i----~   73 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN----IAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFI--DDEHI----G   73 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT----CCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEE--TTEEE----E
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC----CCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEE--CCEEE----e
Confidence            3477899999999999988776532    2456666666554    457777888     99999854  78533    3


Q ss_pred             CCCHHHHHHHHHhHh
Q 015368          146 ERTRDVISAWVREKM  160 (408)
Q Consensus       146 ~~~~~~l~~~i~~~~  160 (408)
                        ..+++.+++++.+
T Consensus        74 --g~~~i~~~~~~~~   86 (89)
T 3msz_A           74 --GFTELKANADKIL   86 (89)
T ss_dssp             --SHHHHHHTHHHHT
T ss_pred             --ChHHHHHHHHHHh
Confidence              4567777776654

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.17  E-value=8.7e-06  Score=61.59  Aligned_cols=96  Identities=17%  Similarity=0.174  Sum_probs=73.5

Q ss_pred             CCcccccChhHHHHHhccCCeEEEEEecCCCCc---CHHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEE
Q 015368          162 LGTYSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI  235 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~  235 (408)
                      +.+..+++.++++..++.++.+++.|+++||.+   ..+.+..+++...++.|..+   .+.++++++++.   +.|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~---~~Pt~~   88 (114)
T 2oe3_A           12 TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVT---AMPTFV   88 (114)
T ss_dssp             GGSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCC---SBSEEE
T ss_pred             hheeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCC---cccEEE
Confidence            346678899999999999999999999999987   44556666633334777765   456799999998   599999


Q ss_pred             EeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          236 FLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       236 ~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      +++.+ .....+.|.. .+.|.+||++
T Consensus        89 ~~~~G-~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           89 LGKDG-QLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             EEETT-EEEEEEESSC-HHHHHHHHHT
T ss_pred             EEeCC-eEEEEEeCCC-HHHHHHHHHh
Confidence            88644 2345677877 8999999874

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.17  E-value=6.6e-06  Score=61.85  Aligned_cols=96  Identities=18%  Similarity=0.132  Sum_probs=73.3

Q ss_pred             CCcccccChhHHHHHhcc----CCeEEEEEecCCCCcCH---HHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCC
Q 015368          162 LGTYSITTTDEAERILTV----ESKLVLGFLHDLEGMES---EELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSK  230 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~----~~~~vi~f~~~~~~~~~---~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~  230 (408)
                      ..+..+.+.++++..+..    ++.+++.|+.+||.++.   +.+..++ .+.+++.|..+   .+.+++++|++.   +
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~---~   78 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGIT---A   78 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCC---B
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCC---c
Confidence            456778888999988875    78899999999998754   3455555 45547888765   456799999998   5


Q ss_pred             CCeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          231 RPALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       231 ~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      .|++++++.+ .....+.|. +.+++.+|++.
T Consensus        79 ~Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~  108 (112)
T 1ep7_A           79 MPTFHVYKDG-VKADDLVGA-SQDKLKALVAK  108 (112)
T ss_dssp             SSEEEEEETT-EEEEEEESC-CHHHHHHHHHH
T ss_pred             ccEEEEEECC-eEEEEEcCC-CHHHHHHHHHH
Confidence            9999988644 234567787 88999999875

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.16  E-value=6e-06  Score=61.39  Aligned_cols=96  Identities=9%  Similarity=0.098  Sum_probs=64.4

Q ss_pred             ccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEE
Q 015368          272 TIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAY  349 (408)
Q Consensus       272 t~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i  349 (408)
                      |.+++......+.++++ ++.+|+. |+...+.+.++++++. +   +.|+.+|++..   +.+++.|++..  .|.+++
T Consensus         7 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~---~~~~~vd~~~~---~~l~~~~~v~~--~Pt~~~   77 (105)
T 4euy_A            7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-Y---VEKIEILLQDM---QEIAGRYAVFT--GPTVLL   77 (105)
T ss_dssp             ---CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-T---EEEEEEEECCC------------CC--CCEEEE
T ss_pred             CHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-C---ceEEEEECCCC---HHHHHhcCCCC--CCEEEE
Confidence            45667776666666555 4556776 9999999999999994 6   99999998864   47889999953  688888


Q ss_pred             EccCCccccCCCCCChHHHHHHHHHHh
Q 015368          350 SARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       350 ~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      +..+.....+.|..+.+++.+|+++++
T Consensus        78 ~~~G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           78 FYNGKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             EETTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             EeCCeEEEEEeCCcCHHHHHHHHHHhh
Confidence            864333455678889999999998765

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.16  E-value=4.8e-05  Score=60.25  Aligned_cols=110  Identities=12%  Similarity=0.177  Sum_probs=84.9

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcCCcEEEEEeC--cccHhHHHHcCCCc--CcE
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKGEADLVMVDA--YLEKDLAKEYNILA--YPT  130 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~--~~~~~~~~~~~i~~--~Pt  130 (408)
                      +-+.++|.++...+..++-++.++++.. .-..-....+.+.++|+.+++++.|+.||.  ++...+.+.||+..  .|+
T Consensus        14 PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~   93 (147)
T 3bj5_A           14 PLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEECPA   93 (147)
T ss_dssp             -CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECTTCGGGHHHHHHTTCCGGGCSE
T ss_pred             CeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEecchHhHHHHHHHcCCCcccCCE
Confidence            3678899999988887776666554443 333456678999999999999999999999  66667889999996  899


Q ss_pred             EEEEeC-C-eEeEEee-CCCCHHHHHHHHHhHhCCCcc
Q 015368          131 LYLFVA-G-VRQFQFF-GERTRDVISAWVREKMTLGTY  165 (408)
Q Consensus       131 ~~~~~~-g-~~~~~~~-g~~~~~~l~~~i~~~~~~~~~  165 (408)
                      +.+++. + .....+. +..+.+.|.+|++..+...+.
T Consensus        94 v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~l~GkL~  131 (147)
T 3bj5_A           94 VRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIK  131 (147)
T ss_dssp             EEEEECSSSCEEECCSCCCCCHHHHHHHHHHHHTTCSC
T ss_pred             EEEEecccccccCCCCcccCCHHHHHHHHHHHHcCCcc
Confidence            999974 3 1223333 789999999999999876653

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.15  E-value=8.1e-06  Score=69.87  Aligned_cols=107  Identities=17%  Similarity=0.248  Sum_probs=86.1

Q ss_pred             CceEeeccccccc-cccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          266 PLVVTLTIHNAQF-VFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       266 p~v~~lt~~~~~~-~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      +.+..+|.+++.. +..++.++++ ++.+||. |+...+.+.++++++.++   +.|+.+|++..   +.+++.|++.. 
T Consensus        12 ~~~~~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~---~~l~~~~~v~~-   84 (222)
T 3dxb_A           12 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN---PGTAPKYGIRG-   84 (222)
T ss_dssp             CCCEECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC---TTTGGGGTCCS-
T ss_pred             CCceeCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCC---HHHHHHcCCCc-
Confidence            4578899999987 4555665555 5667776 999999999999999998   99999999864   47889999953 


Q ss_pred             CCcEEEEEccCCccccCCCCCChHHHHHHHHHHhcCcc
Q 015368          343 APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       343 ~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                       .|.+++++.+.....+.|..+.+.+.+|+++.+++..
T Consensus        85 -~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~l~~~~  121 (222)
T 3dxb_A           85 -IPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSA  121 (222)
T ss_dssp             -BSEEEEEETTEEEEEEESCCCHHHHHHHHHHHSCCSC
T ss_pred             -CCEEEEEECCeEEEEeccccChHHHHHHHHhhccccc
Confidence             6888888643344457888999999999999998876

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.15  E-value=1.7e-05  Score=59.56  Aligned_cols=97  Identities=14%  Similarity=0.133  Sum_probs=70.6

Q ss_pred             ccccChhHHHHHhccCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEee
Q 015368          165 YSITTTDEAERILTVESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLH  238 (408)
Q Consensus       165 ~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~  238 (408)
                      ..+.+.+++ ..+..++.+++.|+++||.++..   .+..+++...++.|..+   .+.++++++++.   +.|++++|+
T Consensus         5 ~~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~---~~Pt~~~~~   80 (110)
T 2l6c_A            5 RDITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPELMKELGFE---RVPTLVFIR   80 (110)
T ss_dssp             SBCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCC---SSCEEEEEE
T ss_pred             eecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCc---ccCEEEEEE
Confidence            344566777 56667788899999999998544   45555544446777764   466899999998   599999995


Q ss_pred             cCCCcccccCCcCCHHHHHHHHhcCCCC
Q 015368          239 LEAGKATPFRHQFTRLAIANFVTHTKHP  266 (408)
Q Consensus       239 ~~~~~~~~y~g~~~~~~i~~fi~~~~~p  266 (408)
                      .+ .....+.|..+.++|.+++....-|
T Consensus        81 ~G-~~v~~~~G~~~~~~l~~~~~~~~~~  107 (110)
T 2l6c_A           81 DG-KVAKVFSGIMNPRELQALYASIHHH  107 (110)
T ss_dssp             SS-SEEEEEESCCCHHHHHHHHHTC---
T ss_pred             CC-EEEEEEcCCCCHHHHHHHHHHHhhh
Confidence            43 3556788988999999999876543

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=98.15  E-value=5.9e-06  Score=59.82  Aligned_cols=56  Identities=14%  Similarity=0.333  Sum_probs=43.1

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCcCcEEEEEeCCeE
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      .++.|+++||++|++..+.+++.      ++.+..+|+++++.    +.+.+++.++|++  +.+|+.
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~   66 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK------GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVH   66 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT------TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence            46789999999999998888763      46777888877654    4457899999975  457854

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.14  E-value=6.2e-06  Score=62.98  Aligned_cols=106  Identities=13%  Similarity=0.121  Sum_probs=80.0

Q ss_pred             CCceEeeccccccc-cccCCccEEEEE-eeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCC
Q 015368          265 HPLVVTLTIHNAQF-VFQDPRKQLWLF-APAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSG  341 (408)
Q Consensus       265 ~p~v~~lt~~~~~~-~~~~~~~~~i~f-~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  341 (408)
                      ...+..++.+++.. +...+.+.++.| .+++. |....+.+.+++.++.++   +.|+.+|++..   ..+++.+++..
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~i~~   84 (121)
T 2i1u_A           11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDVDTN---PETARNFQVVS   84 (121)
T ss_dssp             -CCSEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC---HHHHHHTTCCS
T ss_pred             cccceecCHHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC---HHHHHhcCCCc
Confidence            34567888888875 344555665554 45565 899999999999999888   99999998864   47889999954


Q ss_pred             CCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhcC
Q 015368          342 NAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       342 ~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                        .|.++++..+.....+.|..+.+.+.+|++.++.+
T Consensus        85 --~Pt~~~~~~g~~~~~~~G~~~~~~l~~~l~~~l~~  119 (121)
T 2i1u_A           85 --IPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPN  119 (121)
T ss_dssp             --SSEEEEEETTEEEEEEESCCCHHHHHHHTCSCCCC
T ss_pred             --CCEEEEEECCEEEEEecCCCCHHHHHHHHHHHHhh
Confidence              68888876433345578888999999999887654

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.13  E-value=1.1e-05  Score=60.38  Aligned_cols=95  Identities=16%  Similarity=0.209  Sum_probs=72.3

Q ss_pred             cccccChhHHHHHhccCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEe
Q 015368          164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL  237 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~  237 (408)
                      .....+.++++..+..++.+++.|+.+||.++..   .+..+++...++.|..+   .+.++++++++.   +.|+++++
T Consensus         8 ~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~~~~~v~---~~Pt~~~~   84 (109)
T 3f3q_A            8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVS---AMPTLLLF   84 (109)
T ss_dssp             CEECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCC---SSSEEEEE
T ss_pred             ccCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCC---ccCEEEEE
Confidence            3445688999999999999999999999988544   45555544455777665   567899999999   59999999


Q ss_pred             ecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          238 HLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       238 ~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      +. +.....+.|. +.++|.+||+++
T Consensus        85 ~~-G~~~~~~~G~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           85 KN-GKEVAKVVGA-NPAAIKQAIAAN  108 (109)
T ss_dssp             ET-TEEEEEEESS-CHHHHHHHHHHH
T ss_pred             EC-CEEEEEEeCC-CHHHHHHHHHhh
Confidence            84 3345567787 679999998753

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.13  E-value=1.2e-05  Score=59.48  Aligned_cols=93  Identities=15%  Similarity=0.287  Sum_probs=70.1

Q ss_pred             ccccChhHHHHHhc--cCCeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEE
Q 015368          165 YSITTTDEAERILT--VESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIF  236 (408)
Q Consensus       165 ~~i~~~~~~~~~~~--~~~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~  236 (408)
                      +.+++.++++..+.  .++++++.|+.+||.++.   +.+..+++...++.|+.+   .+.++++++++.   +.|++++
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~---~~Pt~~~   78 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVT---AMPTFVF   78 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCC---SSSEEEE
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCc---cccEEEE
Confidence            56778889998887  577899999999998744   445555543346777765   456799999998   5999999


Q ss_pred             eecCCCcccccCCcCCHHHHHHHHhc
Q 015368          237 LHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       237 ~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      ++.+ .....+.| .+.+++.+|+++
T Consensus        79 ~~~g-~~~~~~~G-~~~~~l~~~l~~  102 (104)
T 2vim_A           79 IKDG-KEVDRFSG-ANETKLRETITR  102 (104)
T ss_dssp             EETT-EEEEEEES-SCHHHHHHHHHH
T ss_pred             EeCC-cEEEEEeC-CCHHHHHHHHHh
Confidence            9743 34456778 688999999875

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.13  E-value=9.1e-06  Score=59.95  Aligned_cols=101  Identities=12%  Similarity=0.080  Sum_probs=77.5

Q ss_pred             eEeeccccccccccCCccEEEEEe-eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCc
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWLFA-PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR  345 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~f~-~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p  345 (408)
                      +.+++.+++......+.+.++.|. +++. |......+.++++++.+    +.|+.+|++..   ..+++.+++..  .|
T Consensus         1 V~~l~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~~---~~~~~~~~v~~--~P   71 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDEN---PDIAARYGVMS--LP   71 (104)
T ss_dssp             CEECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC---HHHHHHTTCCS--SC
T ss_pred             CeecCHHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCCC---HHHHHhCCccc--cC
Confidence            356788888887766666665554 5565 88999999999999875    89999998764   47889999954  68


Q ss_pred             EEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          346 VIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       346 ~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .++++..+.....+.|..+.+++.+|+++++.
T Consensus        72 t~~~~~~g~~~~~~~g~~~~~~l~~~l~~~l~  103 (104)
T 2e0q_A           72 TVIFFKDGEPVDEIIGAVPREEIEIRIKNLLG  103 (104)
T ss_dssp             EEEEEETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred             EEEEEECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence            88887433334457788899999999998864

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.12  E-value=1.3e-05  Score=61.35  Aligned_cols=97  Identities=16%  Similarity=0.217  Sum_probs=73.7

Q ss_pred             CCcccccChhHHHHHhccCCeEEEEEecCCCCcCHHH---HHHHhc-cCCc-eeEEEe---cCHhHHhhcCCCCCCCCCe
Q 015368          162 LGTYSITTTDEAERILTVESKLVLGFLHDLEGMESEE---LAAASK-LHSD-VNFYQT---TSADVAEFFHIHPKSKRPA  233 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~---~~~~a~-~~~~-~~f~~~---~~~~l~~~~~i~~~~~~p~  233 (408)
                      ..+..|++.++++..+..++.+++.|+.+||.++...   +..+++ +... +.|+.+   .+.++++++++.   +.|+
T Consensus        15 ~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~---~~Pt   91 (121)
T 2j23_A           15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIR---AMPT   91 (121)
T ss_dssp             CCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCC---SSSE
T ss_pred             cceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCC---cccE
Confidence            4567889999999999888899999999999985443   455553 3322 777665   456899999998   5999


Q ss_pred             EEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          234 LIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       234 l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      +++++.+ .....+.|. +.+++.+||+..
T Consensus        92 ~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~  119 (121)
T 2j23_A           92 FVFFKNG-QKIDTVVGA-DPSKLQAAITQH  119 (121)
T ss_dssp             EEEEETT-EEEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEEECC-eEEeeEcCC-CHHHHHHHHHHh
Confidence            9999643 344567787 889999999753

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.12  E-value=1e-05  Score=60.32  Aligned_cols=95  Identities=12%  Similarity=0.147  Sum_probs=70.6

Q ss_pred             CcccccChhHHHHHh--ccCCeEEEEEecCCCCcCH---HHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368          163 GTYSITTTDEAERIL--TVESKLVLGFLHDLEGMES---EELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~--~~~~~~vi~f~~~~~~~~~---~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l  234 (408)
                      .+..+.+.++++..+  ..++.+++.|+++||.++.   +.+..+++..+++.|+.+   .+.++++++++.   +.|++
T Consensus         2 ~v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~---~~Pt~   78 (107)
T 1gh2_A            2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNIS---ATPTF   78 (107)
T ss_dssp             CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCC---SSSEE
T ss_pred             ceEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHhcCCC---cccEE
Confidence            356778889999988  4678899999999998854   445566643367888765   467899999998   59999


Q ss_pred             EEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          235 IFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       235 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      ++++.+ .....+.|. +.++|.+|++.
T Consensus        79 ~~~~~G-~~~~~~~G~-~~~~l~~~l~~  104 (107)
T 1gh2_A           79 QFFRNK-VRIDQYQGA-DAVGLEEKIKQ  104 (107)
T ss_dssp             EEEETT-EEEEEEESS-CHHHHHHHHHH
T ss_pred             EEEECC-eEEEEEeCC-CHHHHHHHHHH
Confidence            999654 244567784 55669999875

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=98.12  E-value=1.8e-05  Score=66.67  Aligned_cols=111  Identities=14%  Similarity=0.264  Sum_probs=79.5

Q ss_pred             cCCCCCCCCcc------CCCcEEcChhhHHHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc
Q 015368           44 LNNNHTWPLLY------AKDVVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL  115 (408)
Q Consensus        44 ~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~  115 (408)
                      ...|..+|++.      +.....++-.+|     .+|.+++.|| +.||+.|..++..|.+.+.+++. ++.++.|.+|.
T Consensus        26 ~~vG~~APdF~~~a~l~d~~g~~vsLsd~-----~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds  100 (219)
T 3tue_A           26 AKINSPAPSFEEVALMPNGSFKKISLSSY-----KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDS  100 (219)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGGGG-----TTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSC
T ss_pred             cccCCcCCCCcccccccCCCCcEEehHHh-----CCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCc
Confidence            45566777764      223333333333     6789999999 89999999999999999999988 89999999864


Q ss_pred             ----------------------------cHhHHHHcCCC----c--CcEEEEEe-CCeEeEEee----CCCCHHHHHHHH
Q 015368          116 ----------------------------EKDLAKEYNIL----A--YPTLYLFV-AGVRQFQFF----GERTRDVISAWV  156 (408)
Q Consensus       116 ----------------------------~~~~~~~~~i~----~--~Pt~~~~~-~g~~~~~~~----g~~~~~~l~~~i  156 (408)
                                                  +.++++.||+-    +  +-.+++++ +|++...+.    -.++.+++.+.|
T Consensus       101 ~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l  180 (219)
T 3tue_A          101 EYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLL  180 (219)
T ss_dssp             HHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHH
T ss_pred             hhhHHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHH
Confidence                                        34578889873    2  34778888 886554332    246788887777


Q ss_pred             HhH
Q 015368          157 REK  159 (408)
Q Consensus       157 ~~~  159 (408)
                      +..
T Consensus       181 ~aL  183 (219)
T 3tue_A          181 EAF  183 (219)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.11  E-value=7.7e-06  Score=69.36  Aligned_cols=107  Identities=17%  Similarity=0.230  Sum_probs=85.6

Q ss_pred             CceEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          266 PLVVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       266 p~v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      +.+..++..++......+.++++ ++.+||. |......+.+++.++.++   +.|+.+|++..   ..+++.+++..  
T Consensus        97 ~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~~~~---~~l~~~~~v~~--  168 (210)
T 3apq_A           97 PEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAVNCGDD---RMLCRMKGVNS--  168 (210)
T ss_dssp             TTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTC---HHHHHHTTCCS--
T ss_pred             CceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc---eEEEEEECCcc---HHHHHHcCCCc--
Confidence            45678888888877766666555 5556776 999999999999999988   99999999864   47889999954  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHHHHHhcCcc
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      .|.++++..+.....+.|..+.+.|.+||++.+...+
T Consensus       169 ~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~l~~~~  205 (210)
T 3apq_A          169 YPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTV  205 (210)
T ss_dssp             SSEEEEECTTSCCEECCSCCCHHHHHHHHHHHHHCCS
T ss_pred             CCeEEEEECCCceeEecCCCCHHHHHHHHHHhCcccc
Confidence            6888888444445568899999999999999987755

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.09  E-value=1.7e-05  Score=59.66  Aligned_cols=97  Identities=13%  Similarity=0.167  Sum_probs=72.9

Q ss_pred             CCcccccChhHHHHHhccCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEE
Q 015368          162 LGTYSITTTDEAERILTVESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI  235 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~  235 (408)
                      +......+.++++..++.++.+++.|+.+||..+..   .+..+++...++.|+.+   .+.++++++++.   +.|+++
T Consensus         8 ~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~---~~Pt~~   84 (112)
T 1syr_A            8 HMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENIT---SMPTFK   84 (112)
T ss_dssp             -CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCC---SSSEEE
T ss_pred             eeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCC---cccEEE
Confidence            344455688999999988899999999999988544   44555543346777765   456799999998   599999


Q ss_pred             EeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          236 FLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       236 ~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      +++.+ .....+.|. +.++|.+||+..
T Consensus        85 ~~~~G-~~~~~~~G~-~~~~l~~~l~~~  110 (112)
T 1syr_A           85 VYKNG-SSVDTLLGA-NDSALKQLIEKY  110 (112)
T ss_dssp             EEETT-EEEEEEESC-CHHHHHHHHHTT
T ss_pred             EEECC-cEEEEEeCC-CHHHHHHHHHHh
Confidence            98743 244567888 889999999764

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.08  E-value=1.3e-05  Score=61.60  Aligned_cols=96  Identities=13%  Similarity=0.225  Sum_probs=67.2

Q ss_pred             CcccccChhHHH-HHhccCCeEEEEEecCCCC--------------cC---HHHHHHHh-ccCCceeEEEe---cCHhHH
Q 015368          163 GTYSITTTDEAE-RILTVESKLVLGFLHDLEG--------------ME---SEELAAAS-KLHSDVNFYQT---TSADVA  220 (408)
Q Consensus       163 ~~~~i~~~~~~~-~~~~~~~~~vi~f~~~~~~--------------~~---~~~~~~~a-~~~~~~~f~~~---~~~~l~  220 (408)
                      .+..++ .++++ .+++.++++++.|+++||.              ++   .+.+..++ ++.+++.|+.+   .+.+++
T Consensus         4 ~v~~l~-~~~f~~~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~   82 (123)
T 1oaz_A            4 KIIHLT-DDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA   82 (123)
T ss_dssp             SCEECC-STTHHHHTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTG
T ss_pred             ccEecC-hhhHHHHHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH
Confidence            455664 46665 4556788999999999999              74   44455544 44456777765   456789


Q ss_pred             hhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          221 EFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       221 ~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      ++|++.   ++|++++++. +.....+.|..+.+++.+||+..
T Consensus        83 ~~~~v~---~~Pt~~~~~~-G~~~~~~~G~~~~~~l~~~l~~~  121 (123)
T 1oaz_A           83 PKYGIR---GIPTLLLFKN-GEVAATKVGALSKGQLKEFLDAN  121 (123)
T ss_dssp             GGGTCC---BSSEEEEEES-SSEEEEEESCCCHHHHHHHHTTT
T ss_pred             HHcCCC---ccCEEEEEEC-CEEEEEEeCCCCHHHHHHHHHHH
Confidence            999998   5999999954 33455788999999999999764

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.08  E-value=1.1e-05  Score=63.58  Aligned_cols=102  Identities=13%  Similarity=0.067  Sum_probs=74.9

Q ss_pred             eEeecc-cccccccc--CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          268 VVTLTI-HNAQFVFQ--DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       268 v~~lt~-~~~~~~~~--~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      +..++. +++.....  ...|+++ |+.+|+. |+...+.|.++|.++.++   +.|+.+|.++   .+.+...|++.  
T Consensus        23 v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe---~~e~a~~y~V~--   94 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITE---VPDFNTMYELY--   94 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTT---CCTTTTTTTCC--
T ss_pred             hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCC---CHHHHHHcCCC--
Confidence            444553 56654442  3445555 5667887 999999999999999998   9999999987   46899999995  


Q ss_pred             CCcEEEEEccCCccc----------cCCCCCC-hHHHHHHHHHHhcC
Q 015368          343 APRVIAYSARDAKKY----------VLNGELT-LSSIKSFGEEFLED  378 (408)
Q Consensus       343 ~~p~i~i~~~~~~~y----------~~~~~~~-~~~i~~Fi~~~~~g  378 (408)
                      ..|.++++.. |+.-          ++.|..+ .++|.++|+.++.|
T Consensus        95 siPT~~fFk~-G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~  140 (160)
T 2av4_A           95 DPVSVMFFYR-NKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRG  140 (160)
T ss_dssp             SSEEEEEEET-TEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEC-CEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHH
Confidence            4788887764 3332          5677665 77888887776654

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=98.07  E-value=7.5e-06  Score=68.21  Aligned_cols=41  Identities=10%  Similarity=0.224  Sum_probs=34.5

Q ss_pred             CCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeC
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDA  113 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~  113 (408)
                      +++++|.|+..|||||+++.|.+   .++.+.+.+++.|..+..
T Consensus        21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~   64 (191)
T 3l9s_A           21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHV   64 (191)
T ss_dssp             SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEEC
T ss_pred             CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEec
Confidence            47899999999999999999986   689999977666666553

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.05  E-value=1.9e-05  Score=58.53  Aligned_cols=100  Identities=10%  Similarity=0.145  Sum_probs=73.1

Q ss_pred             eEeecc-cccccccc--CCccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          268 VVTLTI-HNAQFVFQ--DPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       268 v~~lt~-~~~~~~~~--~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      +.+++. +++.....  .+.+.++. +.+++. |....+.+++++++++++   +.|+.+|++..   ..+++.+++.. 
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~v~~-   74 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDEC---EDIAMEYNISS-   74 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTC---HHHHHHTTCCS-
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCC---eEEEEEeccch---HHHHHHcCCCc-
Confidence            345565 66666665  45555554 455665 889999999999999877   99999998764   47889999954 


Q ss_pred             CCcEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          343 APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       343 ~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                       .|.++++..+.....+.| .+.+.+.+|+++++
T Consensus        75 -~Pt~~~~~~G~~~~~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           75 -MPTFVFLKNGVKVEEFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             -SSEEEEEETTEEEEEEES-CCHHHHHHHHHHTC
T ss_pred             -ccEEEEEcCCcEEEEEcC-CCHHHHHHHHHHhC
Confidence             688887754333444667 68899999998753

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=98.05  E-value=1.1e-05  Score=62.51  Aligned_cols=102  Identities=9%  Similarity=0.053  Sum_probs=74.9

Q ss_pred             CCceEeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          265 HPLVVTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       265 ~p~v~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      .|.+..++...+......+.++++ ++.+||. |+.....+.+++++++++   +.|+.+|++..   ..+++.|++.. 
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---v~~~~vd~d~~---~~l~~~~~v~~-   96 (128)
T 3ul3_B           24 VPRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVDLDKN---ESLARKFSVKS-   96 (128)
T ss_dssp             --CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---EEEEEEEGGGC---HHHHHHTTCCS-
T ss_pred             CCccccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCC---HHHHHHcCCCC-
Confidence            344444455555555555666555 5556776 999999999999999988   99999998864   48889999954 


Q ss_pred             CCcEEEEEccCCccccCCCCCChHHHHHHHHH
Q 015368          343 APRVIAYSARDAKKYVLNGELTLSSIKSFGEE  374 (408)
Q Consensus       343 ~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~  374 (408)
                       .|.++++..+.....+.|..+.++|.+|+++
T Consensus        97 -~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B           97 -LPTIILLKNKTMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             -SSEEEEEETTEEEEEESSCCCHHHHHHHHTT
T ss_pred             -cCEEEEEECCEEEEEecCCCCHHHHHHHHHh
Confidence             6888887544444557888999999999875

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.04  E-value=2.9e-05  Score=58.30  Aligned_cols=94  Identities=17%  Similarity=0.251  Sum_probs=67.6

Q ss_pred             cccccChhHHHHHhcc---CCeEEEEEecCCCCcCHH---HHHHHhcc--CCceeEEEe---cCHhHHhhcCCCCCCCCC
Q 015368          164 TYSITTTDEAERILTV---ESKLVLGFLHDLEGMESE---ELAAASKL--HSDVNFYQT---TSADVAEFFHIHPKSKRP  232 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~---~~~~vi~f~~~~~~~~~~---~~~~~a~~--~~~~~f~~~---~~~~l~~~~~i~~~~~~p  232 (408)
                      +..+++.++++..+..   ++.+++.|+++||.++..   .+..+++.  ..++.|..+   .+.++++++++.   +.|
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~---~~P   78 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEISELFEIS---AVP   78 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHHHHHTTCC---SSS
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHHHHHcCCC---ccc
Confidence            4567777889988875   778999999999998544   45555533  456777765   467899999998   599


Q ss_pred             eEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          233 ALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       233 ~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      ++++++.+ .....+.|. ..+++.+|+..
T Consensus        79 t~~~~~~G-~~~~~~~G~-~~~~l~~~l~~  106 (112)
T 3d6i_A           79 YFIIIHKG-TILKELSGA-DPKEYVSLLED  106 (112)
T ss_dssp             EEEEEETT-EEEEEECSC-CHHHHHHHHHH
T ss_pred             EEEEEECC-EEEEEecCC-CHHHHHHHHHH
Confidence            99999643 344567776 45669898875

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.04  E-value=6.8e-06  Score=64.83  Aligned_cols=105  Identities=6%  Similarity=0.035  Sum_probs=69.6

Q ss_pred             ceEeeccccccccccCCccEEEEEe-eC--CC-chHHHHHHHHHHHHhcCCcceEE--EEEEEcCCcccccchhhhccCC
Q 015368          267 LVVTLTIHNAQFVFQDPRKQLWLFA-PA--YG-SDKVILTFEEVAKALKGKVNMLL--HVYVEMNSEGVGRRVSQEFGVS  340 (408)
Q Consensus       267 ~v~~lt~~~~~~~~~~~~~~~i~f~-~~--~~-~~~~~~~~~~vA~~~~~~~~~i~--f~~vd~~~~~~~~~l~~~~~i~  340 (408)
                      -+..++.+++..........+++|. .+  +. |+...+.|.++|+++ ++   +.  |+.+|++.   .+.+++.||+.
T Consensus        18 ~~~~l~~~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~---v~~~~~~Vd~d~---~~~la~~~~V~   90 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ---FDWQVAVADLEQ---SEAIGDRFNVR   90 (142)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT---SCCEEEEECHHH---HHHHHHTTTCC
T ss_pred             cCcccccccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc---cceeEEEEECCC---CHHHHHhcCCC
Confidence            4677888998887766555555554 34  33 888999999999999 77   88  99999875   45788999995


Q ss_pred             CCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhcCcc
Q 015368          341 GNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       341 ~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      .  .|.++++..+.....+.|..+.+.|.+|++..++...
T Consensus        91 ~--iPT~~~fk~G~~v~~~~G~~~~~~l~~~i~~~l~~~~  128 (142)
T 2es7_A           91 R--FPATLVFTDGKLRGALSGIHPWAELLTLMRSIVDTPA  128 (142)
T ss_dssp             S--SSEEEEESCC----CEESCCCHHHHHHHHHHHHC---
T ss_pred             c--CCeEEEEeCCEEEEEEeCCCCHHHHHHHHHHHhcccc
Confidence            4  6888888543344557888899999999999987644

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=98.03  E-value=1.1e-05  Score=61.11  Aligned_cols=66  Identities=15%  Similarity=0.371  Sum_probs=46.5

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc--c-----HhHHHHcCCCcCcEEEEEeC
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--E-----KDLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~--~-----~~~~~~~~i~~~Pt~~~~~~  136 (408)
                      +.+++.+.+++  ++.|+++|||+|++..+.+++.      ++.+-.+|++.  +     ..+.+..|..++|++++  +
T Consensus         8 ~~~~~~i~~~~--v~vy~~~~Cp~C~~ak~~L~~~------~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi--~   77 (114)
T 3h8q_A            8 RHLVGLIERSR--VVIFSKSYCPHSTRVKELFSSL------GVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFV--N   77 (114)
T ss_dssp             HHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEE--T
T ss_pred             HHHHHHhccCC--EEEEEcCCCCcHHHHHHHHHHc------CCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEE--C
Confidence            45666665554  3339999999999999888764      35566666663  2     23557788999999865  7


Q ss_pred             CeE
Q 015368          137 GVR  139 (408)
Q Consensus       137 g~~  139 (408)
                      |+.
T Consensus        78 g~~   80 (114)
T 3h8q_A           78 KVH   80 (114)
T ss_dssp             TEE
T ss_pred             CEE
Confidence            853

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=98.00  E-value=2e-05  Score=60.61  Aligned_cols=102  Identities=9%  Similarity=0.114  Sum_probs=75.9

Q ss_pred             Eeecccccc-----ccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEE--cCCcccccchhhhccC
Q 015368          269 VTLTIHNAQ-----FVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVE--MNSEGVGRRVSQEFGV  339 (408)
Q Consensus       269 ~~lt~~~~~-----~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd--~~~~~~~~~l~~~~~i  339 (408)
                      ..++..++.     .....+.++++ ++.+||. |......+.+++.++.++   +.|+.+|  ++.   ...+++.||+
T Consensus         7 ~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~d~---~~~~~~~~~v   80 (126)
T 2l57_A            7 KQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGK---FNIYYARLEEEK---NIDLAYKYDA   80 (126)
T ss_dssp             SCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSS---CEEEEEETTSSH---HHHHHHHTTC
T ss_pred             CCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCC---eEEEEEeCCCCc---hHHHHHHcCC
Confidence            344555544     33444555555 4556676 899999999999999877   9999999  664   3578899999


Q ss_pred             CCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcC
Q 015368          340 SGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      .  ..|.+++++.+|+ .+.+.|..+.+++.+|++..+..
T Consensus        81 ~--~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~  118 (126)
T 2l57_A           81 N--IVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLGVK  118 (126)
T ss_dssp             C--SSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHCCC
T ss_pred             c--ceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHhcc
Confidence            5  3789999886444 45577888999999999988765

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=97.95  E-value=3.9e-05  Score=58.92  Aligned_cols=96  Identities=16%  Similarity=0.120  Sum_probs=71.3

Q ss_pred             CCcccccChhHHHHHhcc----CCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCC
Q 015368          162 LGTYSITTTDEAERILTV----ESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKR  231 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~----~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~  231 (408)
                      ..+..+.+.++++..+..    ++.+++.|+.+||.++..   .+..+++...++.|..+   .+.+++++|++.   +.
T Consensus        16 ~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~---~~   92 (124)
T 1xfl_A           16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQ---AM   92 (124)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCC---SS
T ss_pred             CcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCC---cc
Confidence            456778888999888864    778999999999988543   45555533346777765   466899999998   59


Q ss_pred             CeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          232 PALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       232 p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      |++++++.+ .....+.| .+.+++.+||+.
T Consensus        93 Pt~~~~~~G-~~~~~~~G-~~~~~l~~~l~~  121 (124)
T 1xfl_A           93 PTFMFLKEG-KILDKVVG-AKKDELQSTIAK  121 (124)
T ss_dssp             SEEEEEETT-EEEEEEES-CCHHHHHHHHHH
T ss_pred             CEEEEEECC-EEEEEEeC-CCHHHHHHHHHH
Confidence            999998644 23445677 588999999875

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=97.93  E-value=1.8e-05  Score=58.63  Aligned_cols=96  Identities=7%  Similarity=0.029  Sum_probs=69.8

Q ss_pred             CCcccccChhHHHHHhccCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCH----hHHhhcCCCCCCCC
Q 015368          162 LGTYSITTTDEAERILTVESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSA----DVAEFFHIHPKSKR  231 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~----~l~~~~~i~~~~~~  231 (408)
                      .....|+|.++++++++.+++++|.|+++||+++..   .|.+.+. ..++.|+.+   ...    .++++++|..  ..
T Consensus         6 ~~~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~-~~~v~~~~vdVde~r~~Sn~IA~~~~V~h--~s   82 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLY-ERDMDGYYLIVQQERDLSDYIAKKTNVKH--ES   82 (112)
T ss_dssp             GCEEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHH-HHTCCEEEEEGGGGHHHHHHHHHHHTCCC--CS
T ss_pred             cceeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhc-cCCceEEEEEeecCchhhHHHHHHhCCcc--CC
Confidence            345678899999999998999999999999998554   4445543 256777764   333    3899999982  27


Q ss_pred             CeEEEeecCCCcccccCCcCCHHHHHHHH
Q 015368          232 PALIFLHLEAGKATPFRHQFTRLAIANFV  260 (408)
Q Consensus       232 p~l~~~~~~~~~~~~y~g~~~~~~i~~fi  260 (408)
                      |++++|+++......-.+..+.++|.+.+
T Consensus        83 Pq~il~k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           83 PQAFYFVNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             SEEEEEETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             CeEEEEECCEEEEEeeccccCHHHHHHhh
Confidence            99999998753333344667777777654

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.93  E-value=7.5e-05  Score=52.70  Aligned_cols=79  Identities=15%  Similarity=0.162  Sum_probs=63.2

Q ss_pred             EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCCCCC
Q 015368          286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELT  364 (408)
Q Consensus       286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~  364 (408)
                      ++.++.+++. |....+.++++++++.++   +.|+.+|.++.   ..+.+.+|+..  .|.+++   +|+. .+.|..+
T Consensus         6 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~---~~~~~~~~v~~--~Pt~~~---~G~~-~~~G~~~   73 (85)
T 1fo5_A            6 IELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN---PQKAMEYGIMA--VPTIVI---NGDV-EFIGAPT   73 (85)
T ss_dssp             EEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSS---CCTTTSTTTCC--SSEEEE---TTEE-ECCSSSS
T ss_pred             EEEEeCCCCCchHHHHHHHHHHHHHcCCc---eEEEEEECCCC---HHHHHHCCCcc--cCEEEE---CCEE-eeecCCC
Confidence            3445666776 899999999999999988   99999998764   47788999953  688888   3554 6778788


Q ss_pred             hHHHHHHHHHHh
Q 015368          365 LSSIKSFGEEFL  376 (408)
Q Consensus       365 ~~~i~~Fi~~~~  376 (408)
                      .+++.+|+++.+
T Consensus        74 ~~~l~~~l~~~l   85 (85)
T 1fo5_A           74 KEALVEAIKKRL   85 (85)
T ss_dssp             SHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.92  E-value=2.7e-05  Score=69.41  Aligned_cols=107  Identities=13%  Similarity=0.228  Sum_probs=84.5

Q ss_pred             CCceEeeccccccccccC--CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCC
Q 015368          265 HPLVVTLTIHNAQFVFQD--PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVS  340 (408)
Q Consensus       265 ~p~v~~lt~~~~~~~~~~--~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~  340 (408)
                      .+.+.++|.+++..+...  +.++++ |+.+||. |....+.+.++++++.++   +.|+.+|++..   +.+++.||+.
T Consensus         6 ~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~---~~~~~~~~v~   79 (287)
T 3qou_A            6 VENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKLDCDAE---QMIAAQFGLR   79 (287)
T ss_dssp             CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS---SEEEEEETTTC---HHHHHTTTCC
T ss_pred             CCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEEeCccC---HHHHHHcCCC
Confidence            467899999999987764  445544 6667887 999999999999999998   99999999864   5888999995


Q ss_pred             CCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhcCc
Q 015368          341 GNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       341 ~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                      .  .|.++++..+.....+.|..+.+.+.+|++..+.+.
T Consensus        80 ~--~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~~~lp~~  116 (287)
T 3qou_A           80 A--IPTVYLFQNGQPVDGFQGPQPEEAIRALLDXVLPRE  116 (287)
T ss_dssp             S--SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHSCCH
T ss_pred             C--CCeEEEEECCEEEEEeeCCCCHHHHHHHHHHHcCCc
Confidence            3  678887754333334778889999999999877543

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.91  E-value=8.1e-05  Score=57.96  Aligned_cols=100  Identities=14%  Similarity=0.160  Sum_probs=73.1

Q ss_pred             CCCcccccChhHHHHHhcc--CCeEEEEEecCCCCcCHHHH------HHHhccCCceeEEEec-------CHhHHhhcCC
Q 015368          161 TLGTYSITTTDEAERILTV--ESKLVLGFLHDLEGMESEEL------AAASKLHSDVNFYQTT-------SADVAEFFHI  225 (408)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~--~~~~vi~f~~~~~~~~~~~~------~~~a~~~~~~~f~~~~-------~~~l~~~~~i  225 (408)
                      .+.+..+.+.++++..+..  ++.++|.|+.+||.++....      ..+++...++.+..+.       ...++++|++
T Consensus        10 ~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v   89 (134)
T 2fwh_A           10 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV   89 (134)
T ss_dssp             CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTC
T ss_pred             CCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCC
Confidence            3556668888888877754  67899999999999865543      3444333357776542       3568899999


Q ss_pred             CCCCCCCeEEEeecCCCcc--cccCCcCCHHHHHHHHhcC
Q 015368          226 HPKSKRPALIFLHLEAGKA--TPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       226 ~~~~~~p~l~~~~~~~~~~--~~y~g~~~~~~i~~fi~~~  263 (408)
                      .   +.|+++++..++...  ..+.|..+.++|.++++..
T Consensus        90 ~---~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           90 L---GLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR  126 (134)
T ss_dssp             C---SSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred             C---CCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHhc
Confidence            8   599999995544333  5788999999999999764

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=97.91  E-value=2e-05  Score=60.19  Aligned_cols=104  Identities=10%  Similarity=0.165  Sum_probs=77.0

Q ss_pred             CCceEeeccccccccccC----CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhcc
Q 015368          265 HPLVVTLTIHNAQFVFQD----PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFG  338 (408)
Q Consensus       265 ~p~v~~lt~~~~~~~~~~----~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~  338 (408)
                      .+.+..++.+++......    +.+.++ ++.+|+. |....+.+.++++++.+    +.|+.+|++..   ..+++.||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~---~~~~~~~~   84 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDVDEL---KPIAEQFS   84 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTC---HHHHHHTT
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----cEEEEEECCCC---HHHHHHcC
Confidence            355667777777766643    445555 4555665 88999999999999875    89999998863   47889999


Q ss_pred             CCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhcC
Q 015368          339 VSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       339 i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      +..  .|.++++..+.....+.|.. .+++.+|++.++.+
T Consensus        85 v~~--~Pt~~~~~~G~~~~~~~G~~-~~~l~~~l~~~l~~  121 (122)
T 2vlu_A           85 VEA--MPTFLFMKEGDVKDRVVGAI-KEELTAKVGLHAAA  121 (122)
T ss_dssp             CCS--SSEEEEEETTEEEEEEESSC-HHHHHHHHHHHHSC
T ss_pred             CCc--ccEEEEEeCCEEEEEEeCcC-HHHHHHHHHHHhcc
Confidence            954  67888775433344567766 89999999998765

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=97.90  E-value=5.2e-05  Score=56.76  Aligned_cols=103  Identities=11%  Similarity=0.160  Sum_probs=75.7

Q ss_pred             CceEeeccccccccccC--CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCC
Q 015368          266 PLVVTLTIHNAQFVFQD--PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSG  341 (408)
Q Consensus       266 p~v~~lt~~~~~~~~~~--~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  341 (408)
                      ..+..++.+++......  +.+.++ ++.+|+. |....+.+.+++.++++    +.|+.+|+++.  ...+++.||+..
T Consensus         5 ~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~--~~~~~~~~~v~~   78 (111)
T 2pu9_C            5 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLDCNQE--NKTLAKELGIRV   78 (111)
T ss_dssp             TSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST--THHHHHHHCCSB
T ss_pred             CccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC----eEEEEEecCcc--hHHHHHHcCCCe
Confidence            45778898998877763  445555 4556666 89999999999999874    89999998732  357889999954


Q ss_pred             CCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          342 NAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       342 ~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                        .|.++++..+.....+.|. +.+++.+||+++++
T Consensus        79 --~Pt~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~  111 (111)
T 2pu9_C           79 --VPTFKILKENSVVGEVTGA-KYDKLLEAIQAARS  111 (111)
T ss_dssp             --SSEEEEESSSSEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             --eeEEEEEeCCcEEEEEcCC-CHHHHHHHHHHhhC
Confidence              6787776543333445665 48899999998763

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=97.88  E-value=3.1e-05  Score=58.78  Aligned_cols=96  Identities=8%  Similarity=0.122  Sum_probs=68.3

Q ss_pred             CcccccChhHHHHHh-ccCC--eEEEEEecCCCCc---CHHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEE
Q 015368          163 GTYSITTTDEAERIL-TVES--KLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIF  236 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~-~~~~--~~vi~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~  236 (408)
                      .+.++ +.+++...+ +...  .+++.|+++||.+   ..+.+..+|+...++.|..+.-.+..++|++.   +.|++++
T Consensus         4 ~v~~i-t~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~~~~~~v~---~~PT~~~   79 (118)
T 3evi_A            4 ELREI-SGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSCIQHYHDN---CLPTIFV   79 (118)
T ss_dssp             SCEEC-CGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGTSTTCCGG---GCSEEEE
T ss_pred             ceEEe-CHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHhHHHCCCC---CCCEEEE
Confidence            45667 446665554 4443  7888899999987   45567777754567999988666667899998   5999999


Q ss_pred             eecCCCcccccCC-------cCCHHHHHHHHhcC
Q 015368          237 LHLEAGKATPFRH-------QFTRLAIANFVTHT  263 (408)
Q Consensus       237 ~~~~~~~~~~y~g-------~~~~~~i~~fi~~~  263 (408)
                      |+++. ....+.|       .++.++|..|+.++
T Consensus        80 fk~G~-~v~~~~G~~~~gg~~~~~~~le~~L~~~  112 (118)
T 3evi_A           80 YKNGQ-IEAKFIGIIECGGINLKLEELEWKLAEV  112 (118)
T ss_dssp             EETTE-EEEEEESTTTTTCSSCCHHHHHHHHHTT
T ss_pred             EECCE-EEEEEeChhhhCCCCCCHHHHHHHHHHc
Confidence            99764 2222222       46789999999764

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=97.88  E-value=2.8e-05  Score=58.91  Aligned_cols=98  Identities=12%  Similarity=0.261  Sum_probs=72.3

Q ss_pred             eEeecc-cccccccc--CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          268 VVTLTI-HNAQFVFQ--DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       268 v~~lt~-~~~~~~~~--~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      +.+++. +++.....  .+.+.++ ++.+|+. |....+.+.++++++  +   +.|+.+|++..   ..+++.+|+.. 
T Consensus        15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~---~~~~~vd~~~~---~~~~~~~~v~~-   85 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--D---AIFVKVDVDKL---EETARKYNISA-   85 (117)
T ss_dssp             EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--S---SEEEEEETTTS---HHHHHHTTCCS-
T ss_pred             eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--C---cEEEEEECCcc---HHHHHHcCCCc-
Confidence            566676 77776665  4555555 4556666 899999999999998  5   89999998763   47889999954 


Q ss_pred             CCcEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          343 APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       343 ~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                       .|.++++..+.....+.| .+.+++.+|+++++
T Consensus        86 -~Pt~~~~~~G~~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           86 -MPTFIAIKNGEKVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             -SSEEEEEETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             -cceEEEEeCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence             678887754333344667 68899999998763

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=97.87  E-value=6.7e-05  Score=59.65  Aligned_cols=95  Identities=22%  Similarity=0.293  Sum_probs=71.8

Q ss_pred             cccccChhHHHHHh--ccCCeEEEEEecCCCCcCHH---HHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368          164 TYSITTTDEAERIL--TVESKLVLGFLHDLEGMESE---ELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       164 ~~~i~~~~~~~~~~--~~~~~~vi~f~~~~~~~~~~---~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l  234 (408)
                      +..+.+.++++..+  ..+++++|.|+++||.++..   .+..++ ++.+++.|+.+   .+.+++++|++.   +.|++
T Consensus         5 l~~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~---~~Pt~   81 (149)
T 3gix_A            5 LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDIS---YIPST   81 (149)
T ss_dssp             CCEECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCC---SSSEE
T ss_pred             eeecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCC---ccCeE
Confidence            44567888898888  45789999999999998544   455666 45555887765   566799999998   59999


Q ss_pred             EEeecCCCcc---------cccCC-cCCHHHHHHHHhc
Q 015368          235 IFLHLEAGKA---------TPFRH-QFTRLAIANFVTH  262 (408)
Q Consensus       235 ~~~~~~~~~~---------~~y~g-~~~~~~i~~fi~~  262 (408)
                      ++++.+. ..         ..+.| ..+.+++.++++.
T Consensus        82 ~~~~~G~-~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~  118 (149)
T 3gix_A           82 VFFFNGQ-HMKVDYGSPDHTKFVGSFKTKQDFIDLIEV  118 (149)
T ss_dssp             EEEETTE-EEEEECSSSCCSCEESCCSSHHHHHHHHHH
T ss_pred             EEEECCe-EEEeecCCCCCCeEeeecCCHHHHHHHHHH
Confidence            9887653 33         46778 6788899888875

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=97.86  E-value=6.3e-05  Score=57.06  Aligned_cols=95  Identities=9%  Similarity=0.068  Sum_probs=69.3

Q ss_pred             CcccccChhHHHHHhccCCeEEEEEecCCCCcCHH---HHHHHh-ccCCceeEEEec-------CHhHHhhcCCCCCCCC
Q 015368          163 GTYSITTTDEAERILTVESKLVLGFLHDLEGMESE---ELAAAS-KLHSDVNFYQTT-------SADVAEFFHIHPKSKR  231 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~---~~~~~a-~~~~~~~f~~~~-------~~~l~~~~~i~~~~~~  231 (408)
                      .+..+ +.++++..+..++.+++.|+++||.++..   .+..++ ++...+.+..+.       ...+++++++.   +.
T Consensus        13 ~~~~~-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~---~~   88 (118)
T 1zma_A           13 DLEVT-TVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIP---TV   88 (118)
T ss_dssp             TSEEC-CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCC---SS
T ss_pred             hhhcC-CHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCC---CC
Confidence            34444 67888888888888999999999998544   345555 344455555332       13678899998   59


Q ss_pred             CeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          232 PALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       232 p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      |++++++.+ .....+.|..+.++|.+||++
T Consensus        89 Pt~~~~~~G-~~~~~~~G~~~~~~l~~~l~k  118 (118)
T 1zma_A           89 PGFVHITDG-QINVRCDSSMSAQEIKDFAGL  118 (118)
T ss_dssp             CEEEEEETT-EEEEECCTTCCHHHHHHHHTC
T ss_pred             CeEEEEECC-EEEEEecCCCCHHHHHHHhhC
Confidence            999999754 345678899999999999863

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=97.86  E-value=3.7e-05  Score=57.69  Aligned_cols=96  Identities=17%  Similarity=0.150  Sum_probs=70.3

Q ss_pred             CCcccccChhHHHHHhcc----CCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCC
Q 015368          162 LGTYSITTTDEAERILTV----ESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKR  231 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~----~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~  231 (408)
                      ..+..+.+.++++..+..    ++.+++.|+.+||.++..   .+..+++...++.|..+   .+.++++++++.   +.
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~---~~   80 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVE---AM   80 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCS---ST
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCC---cc
Confidence            346778888899888864    778899999999988544   44555543346777765   456799999998   59


Q ss_pred             CeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          232 PALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       232 p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      |++++++.+ .....+.| .+.+.+.+||..
T Consensus        81 Pt~~~~~~G-~~~~~~~g-~~~~~l~~~l~~  109 (113)
T 1ti3_A           81 PTFIFLKDG-KLVDKTVG-ADKDGLPTLVAK  109 (113)
T ss_dssp             TEEEEEETT-EEEEEEEC-CCTTHHHHHHHH
T ss_pred             cEEEEEeCC-EEEEEEec-CCHHHHHHHHHH
Confidence            999999643 23345667 577888888865

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=97.85  E-value=8.7e-06  Score=62.99  Aligned_cols=70  Identities=10%  Similarity=0.254  Sum_probs=48.3

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhh-hHHHHHHHHHhcCCcEEEEEeCccc-------HhHHHHcCCCcCcEEEEEe
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKL-APEFAAAAKMLKGEADLVMVDAYLE-------KDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~-~p~~~~~~~~~~~~v~~~~v~~~~~-------~~~~~~~~i~~~Pt~~~~~  135 (408)
                      +.++..+..++  ++.|+++||++|++. .+.+.+....   .+.+..+|++.+       .++.+.+|..++|++  |.
T Consensus        28 ~~v~~~i~~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~---~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~v--fi  100 (129)
T 3ctg_A           28 AHVKDLIGQKE--VFVAAKTYCPYCKATLSTLFQELNVP---KSKALVLELDEMSNGSEIQDALEEISGQKTVPNV--YI  100 (129)
T ss_dssp             HHHHHHHHHSS--EEEEECTTCHHHHHHHHHHHTTSCCC---GGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EE
T ss_pred             HHHHHHHcCCC--EEEEECCCCCchHHHHHHHHHhcCcc---CCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEE--EE
Confidence            45556665554  667899999999998 7777654311   255666666543       357788999999996  55


Q ss_pred             CCeEe
Q 015368          136 AGVRQ  140 (408)
Q Consensus       136 ~g~~~  140 (408)
                      +|+.+
T Consensus       101 ~g~~i  105 (129)
T 3ctg_A          101 NGKHI  105 (129)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            78543

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=97.84  E-value=6.4e-05  Score=56.86  Aligned_cols=97  Identities=15%  Similarity=0.161  Sum_probs=71.7

Q ss_pred             CCcccccChhHHHHHhcc----CCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCC
Q 015368          162 LGTYSITTTDEAERILTV----ESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKR  231 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~----~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~  231 (408)
                      ..+..+.+.++++..+..    ++.+++.|+.+||.++..   .+..+++...++.|..+   .+.++++++++.   +.
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~---~~   82 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVE---AM   82 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCC---SB
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCC---cC
Confidence            456778888999888864    778999999999988544   45555543346777665   456789999998   59


Q ss_pred             CeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          232 PALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       232 p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      |++++++.+. ....+.| .+.+++.+||...
T Consensus        83 Pt~~~~~~g~-~~~~~~g-~~~~~l~~~l~~~  112 (118)
T 2vm1_A           83 PTFLFIKDGE-KVDSVVG-GRKDDIHTKIVAL  112 (118)
T ss_dssp             SEEEEEETTE-EEEEEES-CCHHHHHHHHHHH
T ss_pred             cEEEEEeCCe-EEEEecC-CCHHHHHHHHHHH
Confidence            9999996442 3445677 5788999998753

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.81  E-value=6.2e-05  Score=53.16  Aligned_cols=79  Identities=14%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCCCCC
Q 015368          286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELT  364 (408)
Q Consensus       286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~  364 (408)
                      ++.++.+++. |....+.++++++++.++   +.|+.+|.+..   ..+.+.+|+..  .|.+++   +|+. .+.|..+
T Consensus         5 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~---~~~~~~~~v~~--~Pt~~~---~G~~-~~~G~~~   72 (85)
T 1nho_A            5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVD---REKAIEYGLMA--VPAIAI---NGVV-RFVGAPS   72 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTC---GGGGGGTCSSC--SSEEEE---TTTE-EEECSSC
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCC---eEEEEEECCCC---HHHHHhCCcee--eCEEEE---CCEE-EEccCCC
Confidence            4455667776 899999999999999988   99999998764   47788999953  688888   3444 5677778


Q ss_pred             hHHHHHHHHHHh
Q 015368          365 LSSIKSFGEEFL  376 (408)
Q Consensus       365 ~~~i~~Fi~~~~  376 (408)
                      .+++.+|+++.+
T Consensus        73 ~~~l~~~l~~~l   84 (85)
T 1nho_A           73 REELFEAINDEM   84 (85)
T ss_dssp             CHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.81  E-value=4.3e-05  Score=57.18  Aligned_cols=66  Identities=23%  Similarity=0.362  Sum_probs=48.1

Q ss_pred             hhHHHHHcCCCcEEEEEec-----CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCcCcEEEEE
Q 015368           64 KNFSEFMGKNRNVMVMFYA-----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLF  134 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a-----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~  134 (408)
                      +.++..+..++ ++| |+.     +||++|++..+.+++.      ++.+..+|++++++    +.+..|..++|++  |
T Consensus         6 ~~~~~~i~~~~-vvv-y~~g~~~~~~Cp~C~~ak~~L~~~------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~i--f   75 (109)
T 1wik_A            6 SGLKVLTNKAS-VML-FMKGNKQEAKCGFSKQILEILNST------GVEYETFDILEDEEVRQGLKTFSNWPTYPQL--Y   75 (109)
T ss_dssp             CCHHHHHTTSS-EEE-EESSTTTCCCSSTHHHHHHHHHHT------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEE--E
T ss_pred             HHHHHHhccCC-EEE-EEecCCCCCCCchHHHHHHHHHHc------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEE--E
Confidence            44667776554 444 666     9999999998888653      57889999988764    4456688999985  4


Q ss_pred             eCCeE
Q 015368          135 VAGVR  139 (408)
Q Consensus       135 ~~g~~  139 (408)
                      .+|+.
T Consensus        76 i~g~~   80 (109)
T 1wik_A           76 VRGDL   80 (109)
T ss_dssp             CSSSE
T ss_pred             ECCEE
Confidence            57753

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=97.74  E-value=8.2e-05  Score=56.93  Aligned_cols=104  Identities=10%  Similarity=0.140  Sum_probs=75.6

Q ss_pred             CCceEeecccccccccc--CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCC
Q 015368          265 HPLVVTLTIHNAQFVFQ--DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVS  340 (408)
Q Consensus       265 ~p~v~~lt~~~~~~~~~--~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~  340 (408)
                      ...+..++.+++.....  .+.+.++ ++.+|+. |....+.+.++++++.+    +.|+.+|+++.  ...+++.||+.
T Consensus        17 ~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~--~~~~~~~~~v~   90 (124)
T 1faa_A           17 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE--NKTLAKELGIR   90 (124)
T ss_dssp             TTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST--THHHHHHHCCS
T ss_pred             CCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC----CEEEEEecCcc--hHHHHHHcCCC
Confidence            34577888888887665  3445555 4556666 89999999999999874    89999998732  35788999995


Q ss_pred             CCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          341 GNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       341 ~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .  .|.++++..+.....+.|.. .+++.++++++++
T Consensus        91 ~--~Pt~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~~  124 (124)
T 1faa_A           91 V--VPTFKILKENSVVGEVTGAK-YDKLLEAIQAARS  124 (124)
T ss_dssp             S--SSEEEEEETTEEEEEEESSC-HHHHHHHHHHHTC
T ss_pred             e--eeEEEEEeCCcEEEEEcCCC-HHHHHHHHHHhhC
Confidence            4  67877775433334456653 8899999998753

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=97.72  E-value=9e-05  Score=58.00  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=72.2

Q ss_pred             CCCcccccChhHHHHHhc----cCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCC
Q 015368          161 TLGTYSITTTDEAERILT----VESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSK  230 (408)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~----~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~  230 (408)
                      +..+..+.+.++++..+.    .++.+++.|+.+||.++..   .+..+++..+++.|..+   .+.+++++|++.   +
T Consensus        23 ~~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~---~   99 (139)
T 3d22_A           23 GGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIK---A   99 (139)
T ss_dssp             CTTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCC---E
T ss_pred             CCcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCC---c
Confidence            345677888888888774    4778999999999998544   45555543356777765   567799999998   5


Q ss_pred             CCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          231 RPALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       231 ~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      .|++++++.+ .....+.|. +.+++.+||...
T Consensus       100 ~Pt~~~~~~G-~~~~~~~G~-~~~~l~~~l~~~  130 (139)
T 3d22_A          100 TPTFFFLRDG-QQVDKLVGA-NKPELHKKITAI  130 (139)
T ss_dssp             ESEEEEEETT-EEEEEEESC-CHHHHHHHHHHH
T ss_pred             ccEEEEEcCC-eEEEEEeCC-CHHHHHHHHHHH
Confidence            9999999543 344566777 788999998754

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=97.68  E-value=0.0003  Score=58.94  Aligned_cols=87  Identities=20%  Similarity=0.258  Sum_probs=65.6

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHH-HHHHHHhc--CCcEEEEEeCcc---------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEF-AAAAKMLK--GEADLVMVDAYL---------------------------------  115 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~-~~~~~~~~--~~v~~~~v~~~~---------------------------------  115 (408)
                      ..++++|.|....||+|+++.+.+ ..+.+.|.  +++.|...+.--                                 
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~~~~~s~~Aa~aa~a~~~~~~~~f~~~~~aLf~~  107 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEK  107 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCccchhHHHHHHHHHHHHhhCHHHHHHHHHHHHHh
Confidence            457899999999999999999986 56666773  477777665310                                 


Q ss_pred             --------------------------------------------cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHH
Q 015368          116 --------------------------------------------EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV  151 (408)
Q Consensus       116 --------------------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~  151 (408)
                                                                  +...++++||.|+||+++  +|+.   +.|..+.+.
T Consensus       108 ~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~gV~gtPtfvv--nG~~---~~G~~~~e~  182 (202)
T 3gha_A          108 QPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQKMNIQATPTIYV--NDKV---IKNFADYDE  182 (202)
T ss_dssp             CCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHHTTCCSSCEEEE--TTEE---CSCTTCHHH
T ss_pred             CccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCcCCEEEE--CCEE---ecCCCCHHH
Confidence                                                        012346689999999987  8843   679999999


Q ss_pred             HHHHHHhHhCCC
Q 015368          152 ISAWVREKMTLG  163 (408)
Q Consensus       152 l~~~i~~~~~~~  163 (408)
                      |.+.|.+.+...
T Consensus       183 l~~~i~~~~~~~  194 (202)
T 3gha_A          183 IKETIEKELKGK  194 (202)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999998876443

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.67  E-value=0.0019  Score=62.53  Aligned_cols=171  Identities=12%  Similarity=0.021  Sum_probs=116.7

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCe-EeEEeeCCCCHHH
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGV-RQFQFFGERTRDV  151 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~~  151 (408)
                      .+++-+.++...|..|.++...++++++. .+++.+...+  .. .       ...|++.+.++|+ .-.+|.|-..-.+
T Consensus        18 ~~~v~l~~~~~~~~~~~~~~~~~~~~~~~-s~~i~~~~~~--~~-~-------~~~p~~~~~~~~~~~~i~f~g~p~g~e   86 (521)
T 1hyu_A           18 TKPVELIATLDDSAKSAEIKELLAEIAEL-SDKVTFKEDN--TL-P-------VRKPSFLITNPGSQQGPRFAGSPLGHE   86 (521)
T ss_dssp             CSCEEEEEECCSSHHHHHHHHHHHHHHTT-CTTEEEEECT--TS-S-------SCSSEEEEECTTCCCSCEEESCCCGGG
T ss_pred             CCCEEEEEEeCCCcchHHHHHHHHHHHHh-CCceEEEEcC--Cc-c-------cCCCEEEEecCCCcceEEEeccCcchh
Confidence            35677777778899999999988888765 4467763322  11 0       4579999988763 3478888877777


Q ss_pred             HHHHHHhHh--CCCcccccChhHHHHHhcc-CCeEEEEEecCCCCcCHHH---HHHHhccCCceeEEEe---cCHhHHhh
Q 015368          152 ISAWVREKM--TLGTYSITTTDEAERILTV-ESKLVLGFLHDLEGMESEE---LAAASKLHSDVNFYQT---TSADVAEF  222 (408)
Q Consensus       152 l~~~i~~~~--~~~~~~i~~~~~~~~~~~~-~~~~vi~f~~~~~~~~~~~---~~~~a~~~~~~~f~~~---~~~~l~~~  222 (408)
                      +..|+.-.+  ......+ +.+.++.+... .+..+..|+.+||.++...   +..++....++.+..+   ..++++++
T Consensus        87 ~~s~~~~l~~~~~~~~~~-~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~~~~~  165 (521)
T 1hyu_A           87 FTSLVLALLWTGGHPSKE-AQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITE  165 (521)
T ss_dssp             HHHHHHHHHHHTTCCCCS-CHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCC-CHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHHHHHH
Confidence            777776553  2222333 55556655433 4566777889999996544   5555544457877764   56789999


Q ss_pred             cCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       223 ~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      +++.   +.|++++  + + .. ...|..+.++|.+|+...
T Consensus       166 ~~i~---svPt~~i--~-g-~~-~~~G~~~~~~l~~~l~~~  198 (521)
T 1hyu_A          166 RNVM---GVPAVFV--N-G-KE-FGQGRMTLTEIVAKVDTG  198 (521)
T ss_dssp             TTCC---SSSEEEE--T-T-EE-EEESCCCHHHHHHHHCCS
T ss_pred             hCCC---ccCEEEE--C-C-EE-EecCCCCHHHHHHHHhhc
Confidence            9998   5899986  2 2 22 344888889999998764

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=96.82  E-value=6.7e-06  Score=60.94  Aligned_cols=100  Identities=19%  Similarity=0.223  Sum_probs=73.3

Q ss_pred             eEeeccccccccc-cCCccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVF-QDPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~-~~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +.+++.+++.... ..+.+.++. +.+++. |....+.+++++.++.++   +.|+.+|++..   ..+++.+|+..  .
T Consensus         3 v~~l~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~---~~~~~~~~v~~--~   74 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNVDEN---PNTAAQYGIRS--I   74 (106)
Confidence            3566777776443 444455554 455665 889999999999999887   99999998764   47788999954  6


Q ss_pred             cEEEEEccCCccccCCCCCChHHHHHHHHHH
Q 015368          345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~  375 (408)
                      |.++++..+.....+.|..+.+++.+|+++.
T Consensus        75 Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           75 PTLLLFKNGQVVDRLVGAQPKEALKERIDKH  105 (106)
Confidence            7888774344455677888889999998865

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=97.64  E-value=0.00012  Score=55.54  Aligned_cols=101  Identities=18%  Similarity=0.211  Sum_probs=70.5

Q ss_pred             CCccccc-ChhHHHH-HhccCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCe
Q 015368          162 LGTYSIT-TTDEAER-ILTVESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPA  233 (408)
Q Consensus       162 ~~~~~i~-~~~~~~~-~~~~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~  233 (408)
                      +.+..+. +.++++. +.+.++.+++.|+.+||.++..   .+..+++...++.|..+   .+.+++++|++.   +.|+
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~i~---~~Pt   79 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNAADAYGVS---SIPA   79 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCC---SSSE
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHHHHhcCCC---CCCE
Confidence            4456676 7788874 4456778999999999998544   45555532377888766   467899999998   5999


Q ss_pred             EEEeecC---CCcccccCCcCCHHHHHHHHhcCCCC
Q 015368          234 LIFLHLE---AGKATPFRHQFTRLAIANFVTHTKHP  266 (408)
Q Consensus       234 l~~~~~~---~~~~~~y~g~~~~~~i~~fi~~~~~p  266 (408)
                      +++++..   +.....+.|.. ..+|.+.+.++..+
T Consensus        80 ~~~~~~~~~~G~~~~~~~G~~-~~~l~~~~~~~~~~  114 (118)
T 2f51_A           80 LFFVKKEGNEIKTLDQFVGAD-VSRIKADIEKFKHH  114 (118)
T ss_dssp             EEEEEEETTEEEEEEEEESCC-HHHHHHHHHHHC--
T ss_pred             EEEEeCCCCcceEEEeecCCC-HHHHHHHHHHhhhc
Confidence            9999762   22334566764 56699998876544

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=97.61  E-value=7.8e-05  Score=57.50  Aligned_cols=98  Identities=15%  Similarity=0.188  Sum_probs=72.1

Q ss_pred             CCcccccChhHHHHHhcc----CCeEEEEEecCCCCc---CHHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCC
Q 015368          162 LGTYSITTTDEAERILTV----ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKR  231 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~----~~~~vi~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~  231 (408)
                      ..+..+.+.++++..+..    ++.+++.|+.+||.+   ..+.+..+++...++.|..+   .+.+++++|++.   +.
T Consensus        14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~---~~   90 (130)
T 1wmj_A           14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVE---AM   90 (130)
T ss_dssp             SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHHTCC---SS
T ss_pred             cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHcCCC---cc
Confidence            456778888888888854    678888899999887   45666666643346777765   456799999998   59


Q ss_pred             CeEEEeecCCCcccccCCcCCHHHHHHHHhcCC
Q 015368          232 PALIFLHLEAGKATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       232 p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                      |++++++.+ .....+.| .+.+++.+||....
T Consensus        91 Pt~~~~~~g-~~~~~~~g-~~~~~l~~~l~~~~  121 (130)
T 1wmj_A           91 PTFLFIKDG-AEADKVVG-ARKDDLQNTIVKHV  121 (130)
T ss_dssp             CCCCBCTTT-TCCBCCCT-TCTTTHHHHHHHHT
T ss_pred             ceEEEEeCC-eEEEEEeC-CCHHHHHHHHHHHH
Confidence            999988543 34456677 57788988887643

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.57  E-value=0.00017  Score=56.13  Aligned_cols=98  Identities=10%  Similarity=0.079  Sum_probs=69.7

Q ss_pred             CCcccccChhHHHHHhccC---CeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEE
Q 015368          162 LGTYSITTTDEAERILTVE---SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALI  235 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~---~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~  235 (408)
                      ..+..+ +.+++...+...   ..++|.|+++||.++   .+.+..++....++.|+.+......++|++.   +.|+++
T Consensus        10 g~v~~i-~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~~~~~i~---~~Pt~~   85 (135)
T 2dbc_A           10 GELREI-SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCIEHYHDN---CLPTIF   85 (135)
T ss_dssp             CSCEEC-CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSCSSCCSS---CCSEEE
T ss_pred             CceEEc-CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCcccCCCC---CCCEEE
Confidence            346677 778888877542   478889999999884   4456666644457888887555445789998   599999


Q ss_pred             EeecCCCcccccCCc-------CCHHHHHHHHhcCC
Q 015368          236 FLHLEAGKATPFRHQ-------FTRLAIANFVTHTK  264 (408)
Q Consensus       236 ~~~~~~~~~~~y~g~-------~~~~~i~~fi~~~~  264 (408)
                      +|+.+. ....+.|.       ++.++|.+|+..+.
T Consensus        86 ~~~~G~-~v~~~~G~~~~~~~~~~~~~l~~~l~~~~  120 (135)
T 2dbc_A           86 VYKNGQ-IEGKFIGIIECGGINLKLEELEWKLSEVG  120 (135)
T ss_dssp             EESSSS-CSEEEESTTTTTCTTCCHHHHHHHHHHHT
T ss_pred             EEECCE-EEEEEEeEEeeCCCcCCHHHHHHHHHHcC
Confidence            998543 33444443       37899999998753

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.54  E-value=8.7e-05  Score=58.00  Aligned_cols=98  Identities=13%  Similarity=0.140  Sum_probs=67.2

Q ss_pred             CcccccChhHHHHHhccCC--eEEEEEecCCCCc---CHHHHHHHh-ccCC-ceeEEEe---cCHhHHhhcCCCCC---C
Q 015368          163 GTYSITTTDEAERILTVES--KLVLGFLHDLEGM---ESEELAAAS-KLHS-DVNFYQT---TSADVAEFFHIHPK---S  229 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~--~~vi~f~~~~~~~---~~~~~~~~a-~~~~-~~~f~~~---~~~~l~~~~~i~~~---~  229 (408)
                      .+..+ +.++++..+...+  +++|.|+++||.+   ..+.+..++ ++.+ ++.|+.+   .+.+++++|++...   .
T Consensus         8 ~v~~l-~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~   86 (137)
T 2dj0_A            8 YIKYF-NDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTK   86 (137)
T ss_dssp             CCEEC-CTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSS
T ss_pred             eEEEc-cHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcC
Confidence            34555 4577777776544  7899999999987   456667766 4553 7888876   46679999999610   1


Q ss_pred             CCCeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       230 ~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      +.|++++|+.+. ....+.|..+.+.+.+|+.+
T Consensus        87 ~~Pt~~~~~~G~-~~~~~~G~~~~~~l~~~l~~  118 (137)
T 2dj0_A           87 QLPTLILFQGGK-EAMRRPQIDKKGRAVSWTFS  118 (137)
T ss_dssp             CSSEEEEESSSS-EEEEESCBCSSSCBCCCCCC
T ss_pred             CCCEEEEEECCE-EEEEecCcCchHHHHHHHhc
Confidence            389999996542 44567777766666666543

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=97.54  E-value=0.00037  Score=54.77  Aligned_cols=98  Identities=10%  Similarity=0.057  Sum_probs=70.3

Q ss_pred             cccccccc-c-CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEE
Q 015368          273 IHNAQFVF-Q-DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIA  348 (408)
Q Consensus       273 ~~~~~~~~-~-~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~  348 (408)
                      .+++.... . .+.++++ ++.+|+. |+...+.+.++++++.++   +.|+.+|++..   ..+++.|++..  .|.++
T Consensus        11 ~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~---~~~~~~~~i~~--~Pt~~   82 (142)
T 1qgv_A           11 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEV---PDFNKMYELYD--PCTVM   82 (142)
T ss_dssp             HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTC---CTTTTSSCSCS--SCEEE
T ss_pred             HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEccccC---HHHHHHcCCCC--CCEEE
Confidence            34454322 2 3445544 5667776 999999999999999888   99999999864   47889999953  67887


Q ss_pred             EEccCCccc----------cCCCCCC-hHHHHHHHHHHhcCc
Q 015368          349 YSARDAKKY----------VLNGELT-LSSIKSFGEEFLEDK  379 (408)
Q Consensus       349 i~~~~~~~y----------~~~~~~~-~~~i~~Fi~~~~~gk  379 (408)
                      ++.. |+..          .+.|.++ .+++.++|+.+++|.
T Consensus        83 ~~~~-G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~~~  123 (142)
T 1qgv_A           83 FFFR-NKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGA  123 (142)
T ss_dssp             EEET-TEEEEEECC------CCSCCSCHHHHHHHHHHHHHHH
T ss_pred             EEEC-CcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHHHH
Confidence            7754 3222          3456554 889999999988763

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=97.53  E-value=0.0002  Score=60.75  Aligned_cols=98  Identities=13%  Similarity=0.139  Sum_probs=70.4

Q ss_pred             CcccccChhHHHHHhccC---CeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEec--CHhHHhhcCCCCCCCCCeE
Q 015368          163 GTYSITTTDEAERILTVE---SKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTT--SADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~---~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~--~~~l~~~~~i~~~~~~p~l  234 (408)
                      .+..+.+.+++...+...   ..++|.|+.+||.++   .+.+..++.....+.|+.+.  +..++..|++.   ++|++
T Consensus       100 ~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~---~~PTl  176 (217)
T 2trc_P          100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSD---VLPTL  176 (217)
T ss_dssp             SEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHTCSTTSCGG---GCSEE
T ss_pred             eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECCcHHHHHHCCCC---CCCEE
Confidence            356677788888888543   689999999999985   44566666544678888763  34577889998   59999


Q ss_pred             EEeecCCCcccccCCcC-------CHHHHHHHHhcCC
Q 015368          235 IFLHLEAGKATPFRHQF-------TRLAIANFVTHTK  264 (408)
Q Consensus       235 ~~~~~~~~~~~~y~g~~-------~~~~i~~fi~~~~  264 (408)
                      ++|+.+. ....+.|..       +.++|..||..+.
T Consensus       177 ~~~~~G~-~v~~~~G~~~~~g~~~~~~~Le~~L~~~g  212 (217)
T 2trc_P          177 LVYKGGE-LISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEETTE-EEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EEEECCE-EEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence            9998543 334455543       3489999998754

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.50  E-value=0.00039  Score=53.95  Aligned_cols=96  Identities=9%  Similarity=0.054  Sum_probs=68.3

Q ss_pred             CcccccChhHHHHHhcc--CCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368          163 GTYSITTTDEAERILTV--ESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~--~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l  234 (408)
                      .+..+++.++++..+..  ++.++|.|+++||.++..   .+..+++.. ++.|..+   .+.+++++|++.   +.|++
T Consensus        21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v~---~~Pt~   96 (133)
T 3cxg_A           21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIK---ALPTF   96 (133)
T ss_dssp             EEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTCC---SSSEE
T ss_pred             cEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchHHHHHhcCCC---CCCEE
Confidence            45677788888888865  358899999999998544   444444221 4566554   466799999998   59999


Q ss_pred             EEee--cCCC-cccccCCcCCHHHHHHHHhcC
Q 015368          235 IFLH--LEAG-KATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       235 ~~~~--~~~~-~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      ++|+  ++.+ ....+.|. +.++|.+||...
T Consensus        97 ~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~  127 (133)
T 3cxg_A           97 EFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKY  127 (133)
T ss_dssp             EEEEEETTEEEEEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEecCCCeEEEEEEcCC-CHHHHHHHHHHH
Confidence            9996  3321 23456777 789999998754

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=97.49  E-value=0.00066  Score=57.89  Aligned_cols=91  Identities=13%  Similarity=0.159  Sum_probs=64.7

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHH-HHHHHHh--cCCcEEEEEeCc----------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEF-AAAAKML--KGEADLVMVDAY----------------------------------  114 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~-~~~~~~~--~~~v~~~~v~~~----------------------------------  114 (408)
                      ..+++++.|....||+|+++.+.+ .++.++|  .+++.+...+.-                                  
T Consensus        38 ~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p~~~~s~~Aa~aa~aa~~~~~f~~~~~aLF~~q~~  117 (226)
T 3f4s_A           38 KAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYEKQEDYFNFNKAVFNSIDS  117 (226)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECCCSHHHHHHHHHGGGCCSHHHHHHHHHHHHHTGGG
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCCCChhHHHHHHHHHHhhChHHHHHHHHHHHHhCHh
Confidence            356789999999999999999974 7788777  346666654420                                  


Q ss_pred             -------c---------------------------------cHhHHHH-cCCCcCcEEEEEe-CCeEe-----EEeeCCC
Q 015368          115 -------L---------------------------------EKDLAKE-YNILAYPTLYLFV-AGVRQ-----FQFFGER  147 (408)
Q Consensus       115 -------~---------------------------------~~~~~~~-~~i~~~Pt~~~~~-~g~~~-----~~~~g~~  147 (408)
                             .                                 +...+++ +||+|+||+++.. +|+.+     ....|..
T Consensus       118 ~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~~GV~GtPtfvv~~~nG~~~~Ga~~~~~~G~~  197 (226)
T 3f4s_A          118 WNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYK  197 (226)
T ss_dssp             SCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCTTCCCCGGGGEEESCC
T ss_pred             hcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHcCCCcCCEEEEEcCCCEEeeCCCCccccccc
Confidence                   0                                 0123567 9999999999876 77532     1334555


Q ss_pred             CHHHHHHHHHhHhCC
Q 015368          148 TRDVISAWVREKMTL  162 (408)
Q Consensus       148 ~~~~l~~~i~~~~~~  162 (408)
                      +.+.|.+.|.+.+..
T Consensus       198 ~~e~l~~~I~~~l~~  212 (226)
T 3f4s_A          198 ELKYFTNVIDKLYGK  212 (226)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc
Confidence            599999999887743

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.44  E-value=0.00019  Score=55.30  Aligned_cols=103  Identities=12%  Similarity=0.174  Sum_probs=74.0

Q ss_pred             ecccccccccc----CCccEEE-EEeeCCC-chHHHHHH---HHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCC
Q 015368          271 LTIHNAQFVFQ----DPRKQLW-LFAPAYG-SDKVILTF---EEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSG  341 (408)
Q Consensus       271 lt~~~~~~~~~----~~~~~~i-~f~~~~~-~~~~~~~~---~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  341 (408)
                      ++..++...+.    .+.++++ ++.+||. |......+   ..++..+..+   +.++.+|++... ...+++.||+..
T Consensus        11 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-~~~~~~~~~v~~   86 (130)
T 2kuc_A           11 FRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKGE-GVELRKKYGVHA   86 (130)
T ss_dssp             CBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSSTT-HHHHHHHTTCCS
T ss_pred             cccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCcc-hHHHHHHcCCCC
Confidence            45556555442    3445555 4556676 88888888   6777777766   889999987433 457889999954


Q ss_pred             CCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcCc
Q 015368          342 NAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       342 ~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                        .|.+++++.+|+ .+.+.|..+.+++.+||++.+.+.
T Consensus        87 --~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~  123 (130)
T 2kuc_A           87 --YPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESE  123 (130)
T ss_dssp             --SCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCC
T ss_pred             --CCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhc
Confidence              789999876444 445778889999999999998764

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=97.40  E-value=0.0012  Score=56.88  Aligned_cols=98  Identities=12%  Similarity=0.136  Sum_probs=70.1

Q ss_pred             CcccccChhHHHHHhcc---CCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEecC--HhHHhhcCCCCCCCCCeE
Q 015368          163 GTYSITTTDEAERILTV---ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQTTS--ADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~---~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~~~--~~l~~~~~i~~~~~~p~l  234 (408)
                      .+..|.+.+++...+..   +..++|.|+++||.++   .+.+..++.....+.|+.+..  ..++..|++.   ++|++
T Consensus       113 ~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~~~l~~~~~I~---~~PTl  189 (245)
T 1a0r_P          113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNTGAGDRFSSD---VLPTL  189 (245)
T ss_dssp             SEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHHHCCTTSSCTT---TCSEE
T ss_pred             eEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCcHHHHHHCCCC---CCCEE
Confidence            45677788888888843   6788999999999985   445666664445688887643  3477889998   59999


Q ss_pred             EEeecCCCcccccCC-------cCCHHHHHHHHhcCC
Q 015368          235 IFLHLEAGKATPFRH-------QFTRLAIANFVTHTK  264 (408)
Q Consensus       235 ~~~~~~~~~~~~y~g-------~~~~~~i~~fi~~~~  264 (408)
                      ++|+.+. ....+.|       .++.+.|..||..+.
T Consensus       190 l~~~~G~-~v~~~vG~~~~~g~~~~~e~Le~~L~~~g  225 (245)
T 1a0r_P          190 LVYKGGE-LLSNFISVTEQLAEEFFTGDVESFLNEYG  225 (245)
T ss_dssp             EEEETTE-EEEEETTGGGGSCTTCCHHHHHHHHHTTT
T ss_pred             EEEECCE-EEEEEeCCcccccccccHHHHHHHHHHcC
Confidence            9998543 2222222       256789999998864

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=97.36  E-value=0.00055  Score=53.22  Aligned_cols=96  Identities=14%  Similarity=0.015  Sum_probs=69.2

Q ss_pred             CcccccChhHHHHHhccCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe------------cCHhHHhhcCCCC
Q 015368          163 GTYSITTTDEAERILTVESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT------------TSADVAEFFHIHP  227 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~------------~~~~l~~~~~i~~  227 (408)
                      .+..+ +.++++..+..  +++|.|+++||.++..   .+..+++..+ +.|..+            .+.+++++|++. 
T Consensus        17 ~v~~l-~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~-   91 (135)
T 3emx_A           17 RLIYI-TPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAARLEMNKAGVE-   91 (135)
T ss_dssp             EEEEC-CHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHHHHHHHHTCC-
T ss_pred             ceeec-CHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhHHHHHHcCCc-
Confidence            45556 66888888876  8888999999998655   4455553333 666543            345688899998 


Q ss_pred             CCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCCCC
Q 015368          228 KSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHP  266 (408)
Q Consensus       228 ~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~~p  266 (408)
                        +.|++++++.+ .....+.|..+.+.+..|++...-+
T Consensus        92 --~~Pt~~~~~~G-~~v~~~~G~~~~~~~~~~i~~~~~~  127 (135)
T 3emx_A           92 --GTPTLVFYKEG-RIVDKLVGATPWSLKVEKAREIYGG  127 (135)
T ss_dssp             --SSSEEEEEETT-EEEEEEESCCCHHHHHHHHHHHC--
T ss_pred             --eeCeEEEEcCC-EEEEEEeCCCCHHHHHHHHHHHhCC
Confidence              59999999943 3556788999999999999876544

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.00025  Score=54.40  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=44.7

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-----hHHHHcCCCcCcEEEEEeCCe
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-----DLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-----~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      ++|++++..++  ++.|..+||++|++....+.+.. .++-.+..+.||.+.++     .+.+..|...+|++++  +|+
T Consensus         5 ~~~~~ii~~~~--Vvvysk~~Cp~C~~ak~lL~~~~-~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI--~G~   79 (127)
T 3l4n_A            5 KEYSLILDLSP--IIIFSKSTCSYSKGMKELLENEY-QFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLV--NGV   79 (127)
T ss_dssp             HHHHHHHTSCS--EEEEECTTCHHHHHHHHHHHHHE-EEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE--TTE
T ss_pred             HHHHHHHccCC--EEEEEcCCCccHHHHHHHHHHhc-ccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEE--CCE
Confidence            46777776654  66789999999999998887731 11213444444443322     2334468899999854  774

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=97.35  E-value=0.0013  Score=53.89  Aligned_cols=87  Identities=10%  Similarity=0.242  Sum_probs=62.7

Q ss_pred             CCCcEEEEEe-cCCChhHH-hhhHHHHHHHHHh-cC-CcE-EEEEeCcc----------------------cHhHHHHcC
Q 015368           72 KNRNVMVMFY-ANWCYWSK-KLAPEFAAAAKML-KG-EAD-LVMVDAYL----------------------EKDLAKEYN  124 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~-~~~p~~~~~~~~~-~~-~v~-~~~v~~~~----------------------~~~~~~~~~  124 (408)
                      .++++++.|| +.||+.|- .+.+.|.+.+.++ +. ++. ++.|.++.                      +.++++.||
T Consensus        42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~~f~lLsD~~~~~a~~yG  121 (182)
T 1xiy_A           42 NNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFTDSMN  121 (182)
T ss_dssp             TTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTSHHHHHTT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCceEEEeCchHHHHHhC
Confidence            4667777666 57999999 8999999999998 65 674 78777653                      346788888


Q ss_pred             CC-----------cCcEEEEEeCCeEeEEeeCC-------------CCHHHHHHHHHh
Q 015368          125 IL-----------AYPTLYLFVAGVRQFQFFGE-------------RTRDVISAWVRE  158 (408)
Q Consensus       125 i~-----------~~Pt~~~~~~g~~~~~~~g~-------------~~~~~l~~~i~~  158 (408)
                      +.           ....++++++|++...+...             .+++++.++|++
T Consensus       122 v~~~~~~~G~g~~~~R~tfvIddG~V~~~~v~~~~~~~~~~~~~~~~~~~~vL~~L~~  179 (182)
T 1xiy_A          122 MLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKN  179 (182)
T ss_dssp             CEEECGGGTCCEEECCEEEEEETTEEEEEEECSSCCTTCSSCCCSTTSHHHHHHHHHC
T ss_pred             CceeccccCCCCceEEEEEEEcCCEEEEEEEeCCcccccccCcccCCCHHHHHHHHHh
Confidence            73           24567888899776655322             457777777753

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.28  E-value=0.00051  Score=53.15  Aligned_cols=91  Identities=13%  Similarity=0.149  Sum_probs=66.6

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHH--HHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCC-CCCcEEEEEccCCc-c
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFE--EVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSG-NAPRVIAYSARDAK-K  356 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~--~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~-~~~p~i~i~~~~~~-~  356 (408)
                      +.++++ ++.+||. |......|.  +++.++.++   +.++.+|+++.+-...+++.||+.. ...|.+++++.+|+ .
T Consensus        29 ~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           29 HKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEE
T ss_pred             CCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEE
Confidence            445444 5556776 889999999  999999777   9999999832211458889999932 23789999976444 4


Q ss_pred             ccCCC-------CCChHHHHHHHHHHh
Q 015368          357 YVLNG-------ELTLSSIKSFGEEFL  376 (408)
Q Consensus       357 y~~~~-------~~~~~~i~~Fi~~~~  376 (408)
                      +...|       ..+.+++.+|++.+.
T Consensus       106 ~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A          106 YTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             EECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             EEecCCcccccccCCHHHHHHHHHHhc
Confidence            44555       578999999999875

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=97.27  E-value=0.00035  Score=53.37  Aligned_cols=101  Identities=8%  Similarity=0.023  Sum_probs=69.9

Q ss_pred             ceEeeccccccccccC--CccEEE-EEee-------CCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC-----cccc
Q 015368          267 LVVTLTIHNAQFVFQD--PRKQLW-LFAP-------AYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS-----EGVG  330 (408)
Q Consensus       267 ~v~~lt~~~~~~~~~~--~~~~~i-~f~~-------~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~-----~~~~  330 (408)
                      .+...+.+++......  +.++++ ++.+       |+. |....+.+.+++.++.++   +.|+.+|+++     .. .
T Consensus         6 ~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~~~~d~-~   81 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPYWKDP-N   81 (123)
T ss_dssp             EEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHHHHCT-T
T ss_pred             eEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCC---cEEEEEECCCchhhhch-h
Confidence            3455566666665554  455555 4555       676 899999999999999877   9999999831     11 4


Q ss_pred             cchhhhccCCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHH
Q 015368          331 RRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEE  374 (408)
Q Consensus       331 ~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~  374 (408)
                      ..+++.|++..  .|.+++++..++...+.+ .+.+.|.+|+++
T Consensus        82 ~~~~~~~~i~~--~Pt~~~~~~~~~~~g~~~-~~~~~l~~~i~~  122 (123)
T 1wou_A           82 NDFRKNLKVTA--VPTLLKYGTPQKLVESEC-LQANLVEMLFSE  122 (123)
T ss_dssp             CHHHHHHCCCS--SSEEEETTSSCEEEGGGG-GCHHHHHHHHHC
T ss_pred             HHHHHHCCCCe--eCEEEEEcCCceEecccc-CCHHHHHHHHhc
Confidence            57788899954  789988876222222222 567889999874

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=97.23  E-value=0.0018  Score=49.89  Aligned_cols=90  Identities=14%  Similarity=0.147  Sum_probs=65.6

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--------------------ccccchhhhccC
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--------------------GVGRRVSQEFGV  339 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~~i  339 (408)
                      .+.+.++ ++..+|. |......+.+++.++. +   +.|+.++.++.                    .-...+.+.||+
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i   99 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-E---VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGV   99 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-T---SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTC
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-C---eEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCC
Confidence            3445555 4555665 8899999999999998 6   89999997541                    113456778888


Q ss_pred             CCCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          340 SGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .  ..|.+++++.+|+...+.|..+.+++.++++.+++
T Consensus       100 ~--~~P~~~~id~~g~i~~~~g~~~~~~l~~~l~~~l~  135 (136)
T 1zzo_A          100 T--QQPAYAFVDPHGNVDVVRGRMSQDELTRRVTALTS  135 (136)
T ss_dssp             C--SSSEEEEECTTCCEEEEESCCCHHHHHHHHHHHC-
T ss_pred             C--CCceEEEECCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            4  36899998875554366788889999999998764

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=97.19  E-value=0.0017  Score=50.85  Aligned_cols=92  Identities=10%  Similarity=0.121  Sum_probs=68.1

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc------------------------ccccchhh
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE------------------------GVGRRVSQ  335 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~------------------------~~~~~l~~  335 (408)
                      .+.+.++ ++..+|. |......+.++++++.++   +.|+.++.+..                        +-...+.+
T Consensus        28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  104 (148)
T 2b5x_A           28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTD  104 (148)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHH
T ss_pred             CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHH
Confidence            3445555 4555665 889999999999999988   89999986431                        11346778


Q ss_pred             hccCCCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcC
Q 015368          336 EFGVSGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       336 ~~~i~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      .||+.  ..|.+++++.+|+ .+.+.|..+.+++.++|+.++++
T Consensus       105 ~~~v~--~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~  146 (148)
T 2b5x_A          105 AFENE--YVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAE  146 (148)
T ss_dssp             HTCCC--CSSEEEEECTTCBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred             HhCCC--CCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHhc
Confidence            88984  4689999877444 45567778899999999998875

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.07  E-value=0.0052  Score=47.19  Aligned_cols=89  Identities=9%  Similarity=0.137  Sum_probs=64.7

Q ss_pred             CCccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc-------------------ccccchhhhccCC
Q 015368          282 DPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE-------------------GVGRRVSQEFGVS  340 (408)
Q Consensus       282 ~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~-------------------~~~~~l~~~~~i~  340 (408)
                      .+.+.++. +..+|. |......+.++++++. +   +.|+.++.++.                   +-...+.+.||+.
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~   98 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-A---VTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVP   98 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-T---SEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-C---cEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCC
Confidence            34455554 445665 8899999999999998 6   89999998651                   0024667888884


Q ss_pred             CCCCcEEEEEccCCccccCC---CCCChHHHHHHHHHHh
Q 015368          341 GNAPRVIAYSARDAKKYVLN---GELTLSSIKSFGEEFL  376 (408)
Q Consensus       341 ~~~~p~i~i~~~~~~~y~~~---~~~~~~~i~~Fi~~~~  376 (408)
                        ..|.+++++.+|+.-.+.   |..+.+++.+++++++
T Consensus        99 --~~P~~~lid~~G~i~~~~~~~g~~~~~~l~~~l~~ll  135 (136)
T 1lu4_A           99 --WQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT  135 (136)
T ss_dssp             --SSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC-
T ss_pred             --CCCEEEEECCCCcEEEEEcCCCccCHHHHHHHHHHHh
Confidence              368999987755433556   8889999999999875

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=97.01  E-value=0.00091  Score=51.80  Aligned_cols=67  Identities=21%  Similarity=0.350  Sum_probs=45.7

Q ss_pred             hhHHHHHcCCCcEEEEEec----CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH----HHcCCCcCcEEEEEe
Q 015368           64 KNFSEFMGKNRNVMVMFYA----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFV  135 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~i~~~Pt~~~~~  135 (408)
                      +.++..+..+ .++|+.++    +||++|++....+++.      ++.+..+|++.++++.    +..|..++|.+  |-
T Consensus        26 ~~v~~~i~~~-~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~------gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~V--fI   96 (135)
T 2wci_A           26 EKIQRQIAEN-PILLYMKGSPKLPSCGFSAQAVQALAAC------GERFAYVDILQNPDIRAELPKYANWPTFPQL--WV   96 (135)
T ss_dssp             HHHHHHHHHC-SEEEEESBCSSSBSSHHHHHHHHHHHTT------CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEE--EE
T ss_pred             HHHHHHhccC-CEEEEEEecCCCCCCccHHHHHHHHHHc------CCceEEEECCCCHHHHHHHHHHHCCCCcCEE--EE
Confidence            3455555544 46665554    8999999988877553      5778888888775543    44588889986  44


Q ss_pred             CCeE
Q 015368          136 AGVR  139 (408)
Q Consensus       136 ~g~~  139 (408)
                      +|+.
T Consensus        97 ~G~~  100 (135)
T 2wci_A           97 DGEL  100 (135)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            7753

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=96.93  E-value=0.00089  Score=49.57  Aligned_cols=73  Identities=10%  Similarity=-0.079  Sum_probs=51.0

Q ss_pred             CeEEEEEecCCCCcCHHHHHHHhccCCceeEEEe-------cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCH
Q 015368          181 SKLVLGFLHDLEGMESEELAAASKLHSDVNFYQT-------TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTR  253 (408)
Q Consensus       181 ~~~vi~f~~~~~~~~~~~~~~~a~~~~~~~f~~~-------~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~  253 (408)
                      +..+|.|+++||.++......+.++...+.+..+       .+.+++++|++.   ++|++++  .+  .  .|.|..+.
T Consensus        13 k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~~v~~~~~~~~~~~~~l~~~~~V~---~~PT~~i--~G--~--~~~G~~~~   83 (106)
T 3kp8_A           13 QIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGIT---SYPTWII--NG--R--TYTGVRSL   83 (106)
T ss_dssp             HHTCEEEECTTCHHHHHHHHHHGGGGGGSCEEESCTTCTTSCCCHHHHHTTCC---SSSEEEE--TT--E--EEESCCCH
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHhCCEEEEecccccchhHHHHHHcCCe---EeCEEEE--CC--E--EecCCCCH
Confidence            3457789999999866554444333333333322       356799999999   6999876  22  2  48999999


Q ss_pred             HHHHHHHhc
Q 015368          254 LAIANFVTH  262 (408)
Q Consensus       254 ~~i~~fi~~  262 (408)
                      ++|.+|+..
T Consensus        84 ~~l~~~~~~   92 (106)
T 3kp8_A           84 EALAVASGY   92 (106)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhCC
Confidence            999999854

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=96.92  E-value=0.01  Score=46.69  Aligned_cols=97  Identities=14%  Similarity=0.117  Sum_probs=68.6

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc---------------------cccchhhhcc
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG---------------------VGRRVSQEFG  338 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~---------------------~~~~l~~~~~  338 (408)
                      .+.++++ ++..+|. |......+.+++.+++++  ++.++.++.+..+                     -...+.+.||
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~--~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKG--SVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYG  100 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTT--TEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhC
Confidence            3445555 5556676 899999999999999643  2999999875211                     0234556777


Q ss_pred             CCCCCCcEEEEEccCC-ccccCCCCCChHHHHHHHHHHhcCcc
Q 015368          339 VSGNAPRVIAYSARDA-KKYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       339 i~~~~~p~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      ......|.+++++.+| ..+.+.|..+.+++.++|+.+.+++-
T Consensus       101 ~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~~~  143 (151)
T 3raz_A          101 NTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSKCR  143 (151)
T ss_dssp             CCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC--
T ss_pred             CccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHHhh
Confidence            3224578888887744 46678899999999999999999865

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=96.84  E-value=0.01  Score=48.73  Aligned_cols=39  Identities=13%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHH-HHHHHHhcC--CcEEEE
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEF-AAAAKMLKG--EADLVM  110 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~-~~~~~~~~~--~v~~~~  110 (408)
                      ..++.++.|+...||+|..+.+.+ ..+.+.|.+  ++.+..
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~   51 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQF   51 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEE
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence            457889999999999999999998 567777742  455554

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=95.88  E-value=0.00017  Score=55.57  Aligned_cols=93  Identities=10%  Similarity=0.127  Sum_probs=69.9

Q ss_pred             cCCccEEE-EEeeCCC-chHHHHHH---HHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CC
Q 015368          281 QDPRKQLW-LFAPAYG-SDKVILTF---EEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DA  354 (408)
Q Consensus       281 ~~~~~~~i-~f~~~~~-~~~~~~~~---~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~  354 (408)
                      ..+.++++ ++.+||. |......+   .++++.+.++   +.|+.+|++..+ ...+++.|++..  .|.+++++. +|
T Consensus        17 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~-~~~~~~~~~v~~--~Pt~~~~d~~~G   90 (130)
T 2lst_A           17 AHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR---FVVASVSVDTPE-GQELARRYRVPG--TPTFVFLVPKAG   90 (130)
Confidence            34444444 5667776 88888888   8899988888   999999986443 457888999954  688888864 34


Q ss_pred             c---cccCCCCCChHHHHHHHHHHhcCc
Q 015368          355 K---KYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       355 ~---~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                      +   ...+.|..+.+.+.+||+.++++.
T Consensus        91 ~~~~~~~~~G~~~~~~l~~~l~~~~~~~  118 (130)
T 2lst_A           91 AWEEVGRLFGSRPRAEFLKELRQVCVKG  118 (130)
Confidence            4   345788888999999999988764

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=96.81  E-value=0.00068  Score=63.85  Aligned_cols=108  Identities=15%  Similarity=0.150  Sum_probs=76.1

Q ss_pred             ceEeeccccccccccCC--ccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCc-----ceEEEEEEEcCCcccccchhhhc
Q 015368          267 LVVTLTIHNAQFVFQDP--RKQLW-LFAPAYG-SDKVILTFEEVAKALKGKV-----NMLLHVYVEMNSEGVGRRVSQEF  337 (408)
Q Consensus       267 ~v~~lt~~~~~~~~~~~--~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~-----~~i~f~~vd~~~~~~~~~l~~~~  337 (408)
                      .+..++.+++..+....  .++++ ++.+|+. |+...+.+.++|+++..+.     +.+.|+.+|++..   ..+++.|
T Consensus        24 ~V~~Lt~~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~---~~la~~y  100 (470)
T 3qcp_A           24 SVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE---VDLCRKY  100 (470)
T ss_dssp             TEEECSCSCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC---HHHHHHT
T ss_pred             CcEECCHHHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC---HHHHHHc
Confidence            47889999999887653  35544 5667777 9999999999999997321     1399999999864   5889999


Q ss_pred             cCCCCCCcEEEEEccCC--ccccCCCC------------CChHHHHHHHHHHhcCc
Q 015368          338 GVSGNAPRVIAYSARDA--KKYVLNGE------------LTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       338 ~i~~~~~p~i~i~~~~~--~~y~~~~~------------~~~~~i~~Fi~~~~~gk  379 (408)
                      ++..  .|.+++++.++  ....+.|.            ++.+++.+.++.+++.+
T Consensus       101 ~V~~--~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Link~  154 (470)
T 3qcp_A          101 DINF--VPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNKH  154 (470)
T ss_dssp             TCCS--SCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCc--cCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhhhc
Confidence            9954  68888876522  23345553            45566666666655443

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=96.74  E-value=0.011  Score=46.35  Aligned_cols=93  Identities=12%  Similarity=0.046  Sum_probs=67.6

Q ss_pred             CccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc--------------------cccchhhhccCC
Q 015368          283 PRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG--------------------VGRRVSQEFGVS  340 (408)
Q Consensus       283 ~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~--------------------~~~~l~~~~~i~  340 (408)
                      +.++++. +..+|. |......+.+++.++.++  ++.|+.++.+...                    -...+.+.||+.
T Consensus        30 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (152)
T 2lja_A           30 GKYIYIDVWATWCGPCRGELPALKELEEKYAGK--DIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLIN  107 (152)
T ss_dssp             TSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTS--SEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCC
T ss_pred             CCEEEEEEECCcCHhHHHHhHHHHHHHHHhccC--CeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcC
Confidence            3455554 445666 888999999999999763  2899999877531                    012566788884


Q ss_pred             CCCCcEEEEEccCC-ccccCCCCCChHHHHHHHHHHhcCc
Q 015368          341 GNAPRVIAYSARDA-KKYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       341 ~~~~p~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                        ..|.+++++.+| ..+.+.|..+.+++.++|+.+.++.
T Consensus       108 --~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  145 (152)
T 2lja_A          108 --GIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGLE  145 (152)
T ss_dssp             --SSCCEEEECTTSCEEESSCCCTTCHHHHHHHHHHHTCC
T ss_pred             --CCCEEEEECCCCeEEEccCCCCCHHHHHHHHHHHhccc
Confidence              368888888644 4555678888999999999998774

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=96.71  E-value=0.0095  Score=46.82  Aligned_cols=93  Identities=16%  Similarity=0.142  Sum_probs=67.1

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcc-------------------cccchhhhccCC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEG-------------------VGRRVSQEFGVS  340 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~-------------------~~~~l~~~~~i~  340 (408)
                      +.+.++ ++..+|. |......+.+++.++.+ .   +.++.++.+...                   -...+.+.||+.
T Consensus        26 gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~---v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  102 (151)
T 2f9s_A           26 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG---VEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVS  102 (151)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT---EEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC---eEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCC
Confidence            345554 4555666 88999999999999975 4   889888875420                   023567788885


Q ss_pred             CCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcCcc
Q 015368          341 GNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       341 ~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      .  .|.+++++.+|+ .+.+.|..+.+.+.++|+.++++..
T Consensus       103 ~--~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~ll~~~~  141 (151)
T 2f9s_A          103 P--LPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIKPGET  141 (151)
T ss_dssp             S--SCEEEEECTTSEEEEEEESCCCHHHHHHHHHHHSCC--
T ss_pred             C--CCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHhhhh
Confidence            3  689888877444 4456788899999999999988754

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=96.71  E-value=0.0035  Score=49.85  Aligned_cols=90  Identities=12%  Similarity=0.034  Sum_probs=65.9

Q ss_pred             CccEEEEE--eeCCC-chHHHHHH---HHHHHHhcCCcceEEEEEEEcCCcc--------cccchhhhccCCCCCCcEEE
Q 015368          283 PRKQLWLF--APAYG-SDKVILTF---EEVAKALKGKVNMLLHVYVEMNSEG--------VGRRVSQEFGVSGNAPRVIA  348 (408)
Q Consensus       283 ~~~~~i~f--~~~~~-~~~~~~~~---~~vA~~~~~~~~~i~f~~vd~~~~~--------~~~~l~~~~~i~~~~~p~i~  348 (408)
                      +.++++.|  .+||. |......+   .+++..+..+   +.++.+|.+...        -...+++.|++..  .|.++
T Consensus        47 gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~---~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~--~Pt~~  121 (154)
T 2ju5_A           47 HKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVH---LHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTG--FPELV  121 (154)
T ss_dssp             CCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCS--SSEEE
T ss_pred             CCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCc---EEEEEecCccccCCChhhHhhHHHHHHHcCCCC--CCEEE
Confidence            44666655  47877 88888888   7787766556   999999986531        1236778899954  78999


Q ss_pred             EEccCC-ccccCCCCC--ChHHHHHHHHHHhcC
Q 015368          349 YSARDA-KKYVLNGEL--TLSSIKSFGEEFLED  378 (408)
Q Consensus       349 i~~~~~-~~y~~~~~~--~~~~i~~Fi~~~~~g  378 (408)
                      +++.+| ..+.+ |..  +.+.+.++|+.++..
T Consensus       122 ~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~~  153 (154)
T 2ju5_A          122 FIDAEGKQLARM-GFEPGGGAAYVSKVKSALKL  153 (154)
T ss_dssp             EECTTCCEEEEE-CCCTTCHHHHHHHHHHHHTC
T ss_pred             EEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHhc
Confidence            997744 44556 866  889999999998764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=96.70  E-value=0.0088  Score=40.80  Aligned_cols=69  Identities=13%  Similarity=0.045  Sum_probs=51.1

Q ss_pred             EEEEecCCCCcCHHH---HHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcC-CHHHHHH
Q 015368          184 VLGFLHDLEGMESEE---LAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQF-TRLAIAN  258 (408)
Q Consensus       184 vi~f~~~~~~~~~~~---~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~-~~~~i~~  258 (408)
                      .|.|+.+||.++...   +.+++ ++..++.+..+.+.++++++++.   +.|++++  +  ++.... |.. +.+++.+
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~v~---~~Pt~~~--~--G~~~~~-G~~~~~~~l~~   74 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIKEMDQILEAGLT---ALPGLAV--D--GELKIM-GRVASKEEIKK   74 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEECSHHHHHHHTCS---SSSCEEE--T--TEEEEC-SSCCCHHHHHH
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEecCHHHHHHCCCC---cCCEEEE--C--CEEEEc-CCCCCHHHHHH
Confidence            466888999986554   44555 45567888887788999999998   5999997  2  233333 887 8899988


Q ss_pred             HH
Q 015368          259 FV  260 (408)
Q Consensus       259 fi  260 (408)
                      |+
T Consensus        75 ~l   76 (77)
T 1ilo_A           75 IL   76 (77)
T ss_dssp             HC
T ss_pred             Hh
Confidence            86

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=96.68  E-value=0.0047  Score=43.65  Aligned_cols=56  Identities=7%  Similarity=0.181  Sum_probs=40.5

Q ss_pred             EEEEecC----CChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-----ccH----hHHHHcCCC-----cCcEEEEEeCCe
Q 015368           77 MVMFYAN----WCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-----LEK----DLAKEYNIL-----AYPTLYLFVAGV  138 (408)
Q Consensus        77 ~v~f~a~----wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-----~~~----~~~~~~~i~-----~~Pt~~~~~~g~  138 (408)
                      ++.|+.+    ||++|++....+++.      ++.+-.+|++     .++    ++.+..|..     ++|++++ .+|+
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~------gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i-~~g~   74 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PDGS   74 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TTSC
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc------CCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEE-ECCE
Confidence            4568899    999999988777652      4667777777     553    356677888     8998754 4664


Q ss_pred             E
Q 015368          139 R  139 (408)
Q Consensus       139 ~  139 (408)
                      .
T Consensus        75 ~   75 (87)
T 1aba_A           75 H   75 (87)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=96.65  E-value=0.0058  Score=47.49  Aligned_cols=86  Identities=13%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhc-CCcceEEEEEEEcCC-----------------------cccccchhh
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALK-GKVNMLLHVYVEMNS-----------------------EGVGRRVSQ  335 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~-~~~~~i~f~~vd~~~-----------------------~~~~~~l~~  335 (408)
                      .+.++++ ++..+|. |......+.++++++. ..   +.|+.++.+.                       .. ...+.+
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~---~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~  108 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS---VKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDS-KGELMK  108 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSS---EEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECS-SSHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCC---EEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcC-chhHHH
Confidence            3445555 4555665 8899999999999998 45   9999998754                       11 346778


Q ss_pred             hccCCCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHH
Q 015368          336 EFGVSGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGE  373 (408)
Q Consensus       336 ~~~i~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~  373 (408)
                      .|++.  ..|.+++++.+|+ .+.+.|..+.+++.++|+
T Consensus       109 ~~~v~--~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  145 (145)
T 3erw_A          109 EYHII--TIPTSFLLNEKGEIEKTKIGPMTAEQLKEWTE  145 (145)
T ss_dssp             HTTCC--EESEEEEECTTCCEEEEEESCCCHHHHHHHHC
T ss_pred             hcCcC--ccCeEEEEcCCCcEEEEEcCCcCHHHHHHhhC
Confidence            88884  3689999987554 456788889999998873

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=96.64  E-value=0.0079  Score=51.74  Aligned_cols=58  Identities=9%  Similarity=0.135  Sum_probs=43.3

Q ss_pred             CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc---HhHHHHcCCCcCcEEEEEeCCeE
Q 015368           74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE---KDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~---~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      ...++.|+.+||+.|++....+++.      ++.+-.+|++.+   .++.+.+|..++|+++  .+|+.
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~~i~~~~~~~~l~~~~g~~~vP~~~--~~g~~  229 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQVF--IGGKH  229 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEE--ETTEE
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc------CCceEEEECCCchHHHHHHHHhCCCCcCEEE--ECCEE
Confidence            4567778999999999998887753      355666777654   3477889999999985  47743

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=96.61  E-value=0.016  Score=46.13  Aligned_cols=95  Identities=13%  Similarity=0.068  Sum_probs=64.3

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc-cccchhhhc---------------------
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG-VGRRVSQEF---------------------  337 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~-~~~~l~~~~---------------------  337 (408)
                      .+.++++ ++..+|. |......+.+++.+++++  ++.|+.++.++.. -...+++.+                     
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASR--GFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYI  110 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT--TEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTS
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccC--CeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhh
Confidence            3445555 4555665 889999999999999864  2999999887631 011121222                     


Q ss_pred             --cCCCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcCcc
Q 015368          338 --GVSGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       338 --~i~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                        ++  ...|.+++++.+|+ .+.+.|..+.+++.++|++++....
T Consensus       111 ~~~i--~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~  154 (165)
T 3or5_A          111 DGGI--TGIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKA  154 (165)
T ss_dssp             TTCS--CSSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC---
T ss_pred             ccCC--CCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhc
Confidence              45  34689888887554 4567788899999999999987643

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=96.60  E-value=0.021  Score=47.68  Aligned_cols=36  Identities=14%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             HHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          121 KEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       121 ~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      +++||+|+||+++  +|+   .+.|..+.+.|.+.|.+...
T Consensus       162 ~~~GV~GtPtfvv--ng~---~~~G~~~~e~l~~~i~~~~~  197 (205)
T 3gmf_A          162 NQYNVSGTPSFMI--DGI---LLAGTHDWASLRPQILARLN  197 (205)
T ss_dssp             HHHCCCSSSEEEE--TTE---ECTTCCSHHHHHHHHHHHHT
T ss_pred             HHcCCccCCEEEE--CCE---EEeCCCCHHHHHHHHHHHhh
Confidence            6789999999987  784   46899999999999987764

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=96.56  E-value=0.0026  Score=55.03  Aligned_cols=80  Identities=9%  Similarity=-0.002  Sum_probs=56.0

Q ss_pred             CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc------------------ccHhHHHHcCCCcC--cEEEE
Q 015368           74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY------------------LEKDLAKEYNILAY--PTLYL  133 (408)
Q Consensus        74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~------------------~~~~~~~~~~i~~~--Pt~~~  133 (408)
                      +..+..|+.++|++|......+.+++.++  ++....+..+                  ....+.+++|.+++  |++++
T Consensus        43 ~~~VelyTs~gCp~C~~Ak~lL~~~~~~~--~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI~I  120 (270)
T 2axo_A           43 KGVVELFTSQGCASCPPADEALRKMIQKG--DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL  120 (270)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHHT--SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE
T ss_pred             CcEEEEEeCCCCCChHHHHHHHHHhhccC--CeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEEEE
Confidence            36788899999999999999999998765  3532233322                  12347788999988  99765


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                        +|+.   +.|..+.+.+.+.|.+..
T Consensus       121 --ng~~---~v~G~d~~~l~~~l~~~~  142 (270)
T 2axo_A          121 --NGRD---HVKGADVRGIYDRLDAFK  142 (270)
T ss_dssp             --TTTE---EEETTCHHHHHHHHHHHH
T ss_pred             --CCEE---eecCCCHHHHHHHHHHhh
Confidence              6642   233446788888887654

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=96.56  E-value=0.0076  Score=48.65  Aligned_cols=75  Identities=8%  Similarity=0.030  Sum_probs=55.1

Q ss_pred             CCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcC-CcE-EEEEeCcc-----------------------cHhHHHHcCC
Q 015368           72 KNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKG-EAD-LVMVDAYL-----------------------EKDLAKEYNI  125 (408)
Q Consensus        72 ~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~-~v~-~~~v~~~~-----------------------~~~~~~~~~i  125 (408)
                      .++++++.||- .||+.|..+.+.|.+.+.+++. ++. ++.|.+|.                       +.++++.||+
T Consensus        41 ~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~~~~~~~w~~~~~~~~~f~lLSD~~~~~a~ayGv  120 (171)
T 2xhf_A           41 RGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVNDPFVMAAWGKTVDPEHKIRMLADMHGEFTRALGT  120 (171)
T ss_dssp             TTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHHCTTCCSEEEECTTSHHHHHHTC
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeEEEEeCCchHHHHhCC
Confidence            56777777774 7999999999999999888875 775 87777653                       3457788876


Q ss_pred             C-----------cCcEEEEEeCCeEeEEeeCC
Q 015368          126 L-----------AYPTLYLFVAGVRQFQFFGE  146 (408)
Q Consensus       126 ~-----------~~Pt~~~~~~g~~~~~~~g~  146 (408)
                      .           ..-.++++++|++...+..+
T Consensus       121 ~~~~~~~g~g~~~~R~tfvIddG~V~~~~v~~  152 (171)
T 2xhf_A          121 ELDSSKMLGNNRSRRYAMLIDDNKIRSVSTEP  152 (171)
T ss_dssp             BCCCHHHHSSCCBCCEEEEEETTEEEEEEETT
T ss_pred             ceeccccCCCcceEEEEEEEeCCEEEEEEEeC
Confidence            4           22456777889776666543

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=96.49  E-value=0.0042  Score=46.30  Aligned_cols=64  Identities=17%  Similarity=0.383  Sum_probs=43.6

Q ss_pred             hHHHHHcCCCcEEEEEec-----CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHH----HHcCCCcCcEEEEEe
Q 015368           65 NFSEFMGKNRNVMVMFYA-----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLA----KEYNILAYPTLYLFV  135 (408)
Q Consensus        65 ~~~~~~~~~~~~~v~f~a-----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~i~~~Pt~~~~~  135 (408)
                      .++..+.++ +++ .|..     +||++|++....+++.      ++.+..+|++.++++.    +..|...+|.+++  
T Consensus         8 ~v~~~i~~~-~Vv-lf~kg~~~~~~Cp~C~~ak~~L~~~------gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi--   77 (111)
T 3zyw_A            8 RLKKLTHAA-PCM-LFMKGTPQEPRCGFSKQMVEILHKH------NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYV--   77 (111)
T ss_dssp             HHHHHHTSS-SEE-EEESBCSSSBSSHHHHHHHHHHHHT------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEE--
T ss_pred             HHHHHHhcC-CEE-EEEecCCCCCcchhHHHHHHHHHHc------CCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEE--
Confidence            344555544 344 4667     9999999998877653      4667778887765543    3347888999844  


Q ss_pred             CCe
Q 015368          136 AGV  138 (408)
Q Consensus       136 ~g~  138 (408)
                      +|+
T Consensus        78 ~g~   80 (111)
T 3zyw_A           78 SGE   80 (111)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            774

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=96.48  E-value=0.015  Score=46.45  Aligned_cols=90  Identities=8%  Similarity=0.100  Sum_probs=63.6

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcC------------------Ccc-------------
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMN------------------SEG-------------  328 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~------------------~~~-------------  328 (408)
                      .+++.++ ++..+|. |......+.+++++++ +   +.|+.++.+                  ...             
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-~---v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-E---ISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDP  111 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-T---EEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCT
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-C---cEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCC
Confidence            3445444 5556776 8999999999999999 6   999999876                  210             


Q ss_pred             -c-----ccchhhhccCCCCCCcEEEEEccCCccccCCCCC-ChHHHHHHHHHHhcC
Q 015368          329 -V-----GRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGEL-TLSSIKSFGEEFLED  378 (408)
Q Consensus       329 -~-----~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~-~~~~i~~Fi~~~~~g  378 (408)
                       |     ...+.+.|++.  ..|.+++++.+|+.-. .|.. +.+++.++|+.++.|
T Consensus       112 ~~~~~~d~~~~~~~~~v~--~~P~~~lid~~G~i~~-~g~~~~~~~l~~~l~~l~~g  165 (165)
T 3ha9_A          112 SWIMVMDDGSLVEKFNVR--SIDYIVIMDKSSNVLY-AGTTPSLGELESVIKSVQGG  165 (165)
T ss_dssp             TSEEEECCSHHHHHTTCC--SSSEEEEEETTCCEEE-EEESCCHHHHHHHHHHC---
T ss_pred             CeeEEeChHHHHHHhCCC--CceEEEEEcCCCcEEE-eCCCCCHHHHHHHHHHHhcC
Confidence             0     02566777874  3689888887555444 6767 899999999998876

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=96.46  E-value=0.0077  Score=44.67  Aligned_cols=65  Identities=17%  Similarity=0.324  Sum_probs=43.2

Q ss_pred             hHHHHHcCCCcEEEEEec-----CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEe
Q 015368           65 NFSEFMGKNRNVMVMFYA-----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFV  135 (408)
Q Consensus        65 ~~~~~~~~~~~~~v~f~a-----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~  135 (408)
                      .+++.+.++ .++| |..     |||++|++....+.+.      ++.+-.+|++++++.    .+..|...+|+++  -
T Consensus        10 ~v~~~i~~~-~Vvv-y~k~t~~~p~Cp~C~~ak~~L~~~------gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~if--i   79 (109)
T 3ipz_A           10 TLEKLVNSE-KVVL-FMKGTRDFPMCGFSNTVVQILKNL------NVPFEDVNILENEMLRQGLKEYSNWPTFPQLY--I   79 (109)
T ss_dssp             HHHHHHTSS-SEEE-EESBCSSSBSSHHHHHHHHHHHHT------TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEE--E
T ss_pred             HHHHHHccC-CEEE-EEecCCCCCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHHCCCCCCeEE--E
Confidence            345566555 4444 444     5999999988877763      466777888776544    3445888999764  4


Q ss_pred             CCeE
Q 015368          136 AGVR  139 (408)
Q Consensus       136 ~g~~  139 (408)
                      +|+.
T Consensus        80 ~g~~   83 (109)
T 3ipz_A           80 GGEF   83 (109)
T ss_dssp             TTEE
T ss_pred             CCEE
Confidence            7743

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=96.39  E-value=0.0061  Score=48.68  Aligned_cols=83  Identities=8%  Similarity=0.137  Sum_probs=57.8

Q ss_pred             cCCeEEEEEecCCCCcCHHHHH---HHh-ccC-C----------------------------c---eeEEEecCHhHHhh
Q 015368          179 VESKLVLGFLHDLEGMESEELA---AAS-KLH-S----------------------------D---VNFYQTTSADVAEF  222 (408)
Q Consensus       179 ~~~~~vi~f~~~~~~~~~~~~~---~~a-~~~-~----------------------------~---~~f~~~~~~~l~~~  222 (408)
                      .++.++|.|+.+||.++.....   .++ ++. .                            .   +.+....+..+++.
T Consensus        37 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  116 (164)
T 2h30_A           37 KDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQN  116 (164)
T ss_dssp             TTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHHH
Confidence            4567888899999988554433   333 210 1                            1   22333455678999


Q ss_pred             cCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCC
Q 015368          223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       223 ~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                      |++.   +.|+++++..++.....+.|..+.+++.++|+...
T Consensus       117 ~~v~---~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~  155 (164)
T 2h30_A          117 LNIS---VYPSWALIGKDGDVQRIVKGSINEAQALALIRNPN  155 (164)
T ss_dssp             TTCC---SSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             cCCC---ccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            9998   58999999766555566778889999999998654

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=96.36  E-value=0.0083  Score=42.97  Aligned_cols=55  Identities=5%  Similarity=0.012  Sum_probs=38.7

Q ss_pred             EEEEecCCChhH------HhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcC--CCcCcEEEEEeCCeE
Q 015368           77 MVMFYANWCYWS------KKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYN--ILAYPTLYLFVAGVR  139 (408)
Q Consensus        77 ~v~f~a~wC~~C------~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~--i~~~Pt~~~~~~g~~  139 (408)
                      ++.|+.+||+.|      ++....+++    .  ++.+..+|++.+++    +.+..|  ...+|+++  -+|+.
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~----~--~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~if--i~g~~   70 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDG----K--RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIV--NGNHY   70 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH----T--TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEE--ETTEE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHH----C--CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEE--ECCEE
Confidence            566899999999      666555443    2  57788888887643    445677  77999874  46743

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.29  E-value=0.0096  Score=44.29  Aligned_cols=56  Identities=14%  Similarity=0.138  Sum_probs=38.7

Q ss_pred             EEEEEecCCChhHH------hhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHc--------CCCcCcEEEEEeCC
Q 015368           76 VMVMFYANWCYWSK------KLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEY--------NILAYPTLYLFVAG  137 (408)
Q Consensus        76 ~~v~f~a~wC~~C~------~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~--------~i~~~Pt~~~~~~g  137 (408)
                      -++.|+.+||+.|+      +....+++    .  ++.+..+|++.+++.    .+.+        |...+|+++  -+|
T Consensus         9 ~V~vy~~~~C~~C~~~~~~~~ak~~L~~----~--gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vf--i~g   80 (111)
T 2ct6_A            9 VIRVFIASSSGFVAIKKKQQDVVRFLEA----N--KIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIF--NGD   80 (111)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHHHHHHH----T--TCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEE--ETT
T ss_pred             EEEEEEcCCCCCcccchhHHHHHHHHHH----c--CCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEE--ECC
Confidence            46678899999999      55554443    2  588889999877543    3444        677789874  467


Q ss_pred             eE
Q 015368          138 VR  139 (408)
Q Consensus       138 ~~  139 (408)
                      +.
T Consensus        81 ~~   82 (111)
T 2ct6_A           81 RY   82 (111)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.019  Score=43.35  Aligned_cols=66  Identities=14%  Similarity=0.192  Sum_probs=43.5

Q ss_pred             hHHHHHcCCCcEEEEEec----CCChhHHhhhHHHHHHHHHhcCCcE---EEEEeCcccHhH----HHHcCCCcCcEEEE
Q 015368           65 NFSEFMGKNRNVMVMFYA----NWCYWSKKLAPEFAAAAKMLKGEAD---LVMVDAYLEKDL----AKEYNILAYPTLYL  133 (408)
Q Consensus        65 ~~~~~~~~~~~~~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~v~---~~~v~~~~~~~~----~~~~~i~~~Pt~~~  133 (408)
                      .++.++.+++ ++|+-..    |||++|++....+.+.      ++.   +..+|++.++++    .+..|...+|.++ 
T Consensus         8 ~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~ak~lL~~~------gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vf-   79 (121)
T 3gx8_A            8 AIEDAIESAP-VVLFMKGTPEFPKCGFSRATIGLLGNQ------GVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLY-   79 (121)
T ss_dssp             HHHHHHHSCS-EEEEESBCSSSBCTTHHHHHHHHHHHH------TBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEE-
T ss_pred             HHHHHhccCC-EEEEEeccCCCCCCccHHHHHHHHHHc------CCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEE-
Confidence            3455666554 4443333    5999999998888764      344   777888776554    3445788899974 


Q ss_pred             EeCCeE
Q 015368          134 FVAGVR  139 (408)
Q Consensus       134 ~~~g~~  139 (408)
                       -+|+.
T Consensus        80 -I~g~~   84 (121)
T 3gx8_A           80 -VNKEF   84 (121)
T ss_dssp             -ETTEE
T ss_pred             -ECCEE
Confidence             37743

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.22  E-value=0.028  Score=44.10  Aligned_cols=94  Identities=13%  Similarity=0.097  Sum_probs=66.7

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--------------------ccccchhhhccCC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--------------------GVGRRVSQEFGVS  340 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~~i~  340 (408)
                      +.+.++ ++..+|. |......+.+++.++.++  ++.++.++.+..                    +-...+.+.||+.
T Consensus        28 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  105 (153)
T 2l5o_A           28 GKVTLINFWFPSCPGCVSEMPKIIKTANDYKNK--NFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQ  105 (153)
T ss_dssp             TCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGT--TEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCC
Confidence            345444 4556666 889999999999999853  277777663210                    0134677888885


Q ss_pred             CCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcCcc
Q 015368          341 GNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       341 ~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      .  .|.+++++.+|+ .+.+.|..+.+.+.++|+.++.+.-
T Consensus       106 ~--~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~  144 (153)
T 2l5o_A          106 V--YPTSVLIGKKGEILKTYVGEPDFGKLYQEIDTAWRNSD  144 (153)
T ss_dssp             S--SSEEEEECSSSCCCEEEESSCCHHHHHHHHHHHHHCCS
T ss_pred             c--cCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHHhhh
Confidence            3  688888877444 4457788899999999999998754

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=96.21  E-value=0.0091  Score=48.25  Aligned_cols=82  Identities=11%  Similarity=0.022  Sum_probs=56.0

Q ss_pred             ccCCeEEEEEecCCCCcCHHHH------HHHhc-cCCceeEEEec---CHhH--------------------------Hh
Q 015368          178 TVESKLVLGFLHDLEGMESEEL------AAASK-LHSDVNFYQTT---SADV--------------------------AE  221 (408)
Q Consensus       178 ~~~~~~vi~f~~~~~~~~~~~~------~~~a~-~~~~~~f~~~~---~~~l--------------------------~~  221 (408)
                      ..+++++|.|+.+||.++...-      ..+.+ +..++.+..+.   ..++                          .+
T Consensus        45 ~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (172)
T 3f9u_A           45 QHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVGDKWSYLQRV  124 (172)
T ss_dssp             HTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHHHHHHHHHHH
T ss_pred             HcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhhhhhhhhhhhHHHHH
Confidence            4578899999999999875531      22222 22245554432   1112                          67


Q ss_pred             hcCCCCCCCCCeEEEeecCCCcccccCCcCC-HHHHHHHHhc
Q 015368          222 FFHIHPKSKRPALIFLHLEAGKATPFRHQFT-RLAIANFVTH  262 (408)
Q Consensus       222 ~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~-~~~i~~fi~~  262 (408)
                      .|++.   ++|+++++...+.....+.|..+ .+++.+||++
T Consensus       125 ~~~v~---~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~  163 (172)
T 3f9u_A          125 KFGAN---AQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQT  163 (172)
T ss_dssp             HHSCC---CSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHH
T ss_pred             HcCCC---CcceEEEECCCCCEEeeccCCCCCHHHHHHHHHH
Confidence            89998   69999999766555666778888 8999999865

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=96.13  E-value=0.011  Score=46.69  Aligned_cols=89  Identities=11%  Similarity=0.035  Sum_probs=65.3

Q ss_pred             ccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcC--Cc----------------------ccccchhhhc
Q 015368          284 RKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMN--SE----------------------GVGRRVSQEF  337 (408)
Q Consensus       284 ~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~--~~----------------------~~~~~l~~~~  337 (408)
                      .+.++ ++..+|. |......+.++++++  .   +.++.++.+  +.                      .-...+.+.|
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~--~---v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  105 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET--G---VPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARF  105 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH--C---CCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc--C---CeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHh
Confidence            34444 5556666 889999999999999  5   788888871  10                      0134677888


Q ss_pred             cCCCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcCc
Q 015368          338 GVSGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       338 ~i~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                      |+.  ..|.+++++.+|+ .+.+.|..+.+++.++|++...+.
T Consensus       106 ~v~--~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~  146 (154)
T 3ia1_A          106 KVL--GQPWTFVVDREGKVVALFAGRAGREALLDALLLAGADL  146 (154)
T ss_dssp             SBC--SSCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC
T ss_pred             CCC--cccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcc
Confidence            885  4689888877554 455778889999999999988764

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=96.06  E-value=0.03  Score=45.61  Aligned_cols=94  Identities=5%  Similarity=0.073  Sum_probs=62.8

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceE------EEEEEEcCC-c-ccccchhhhccC-------------
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNML------LHVYVEMNS-E-GVGRRVSQEFGV-------------  339 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i------~f~~vd~~~-~-~~~~~l~~~~~i-------------  339 (408)
                      ++++++ ++..+|. |......+.+++++++++.  +      .|+.++.+. . +-...+++.+++             
T Consensus        59 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  136 (183)
T 3lwa_A           59 NQVVILNAWGQWCAPCRSESDDLQIIHEELQAAG--NGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTA  136 (183)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC-----CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGG
T ss_pred             CCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcC--CCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHH
Confidence            445544 4556665 8889999999999987531  5      899998876 2 212233333333             


Q ss_pred             ------CCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcC
Q 015368          340 ------SGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       340 ------~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                            .....|.+++++.+|+ .+.+.|..+.++|.++|+.+++.
T Consensus       137 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~  182 (183)
T 3lwa_A          137 ASLGGVPASVIPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLVDE  182 (183)
T ss_dssp             GGTTTCCTTCCSEEEEECTTSCEEEEECSCCCHHHHHHHHHHHHHC
T ss_pred             HHhccCCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhc
Confidence                  1234687788777444 45677888999999999998753

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=96.06  E-value=0.055  Score=41.11  Aligned_cols=88  Identities=16%  Similarity=0.150  Sum_probs=62.5

Q ss_pred             CccEEEEE-eeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc-------------------------ccccchhh
Q 015368          283 PRKQLWLF-APAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE-------------------------GVGRRVSQ  335 (408)
Q Consensus       283 ~~~~~i~f-~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~-------------------------~~~~~l~~  335 (408)
                      +.++++.| ..+|. |......+.++++++.+.   +.++.++....                         .-...+.+
T Consensus        22 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   98 (138)
T 4evm_A           22 GKKVYLKFWASWCSICLASLPDTDEIAKEAGDD---YVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLE   98 (138)
T ss_dssp             TSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTT---EEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHH
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCC---cEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHH
Confidence            44555544 45565 889999999999998777   99998853210                         00235677


Q ss_pred             hccCCCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHH
Q 015368          336 EFGVSGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       336 ~~~i~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~  375 (408)
                      .||+.  ..|.+++++.+|+ .+.+.|..+.+++.++|+.+
T Consensus        99 ~~~v~--~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           99 TYGVR--SYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HTTCC--SSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             HcCcc--cCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            88884  3689999887444 45677888999999998864

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=95.99  E-value=0.0084  Score=44.82  Aligned_cols=80  Identities=5%  Similarity=-0.108  Sum_probs=55.2

Q ss_pred             cCCeEEEEEecCCCCcCHHHHHHHh-ccCCc-----eeEEE--ecC---HhHHhhcCCCCCCCCCeEEEeecCCCccccc
Q 015368          179 VESKLVLGFLHDLEGMESEELAAAS-KLHSD-----VNFYQ--TTS---ADVAEFFHIHPKSKRPALIFLHLEAGKATPF  247 (408)
Q Consensus       179 ~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~-----~~f~~--~~~---~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y  247 (408)
                      +....+|.|+++||.++...-..++ .+...     +.+..  ++.   ..++..+++.   +.|++++|+.+ ......
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~---g~PT~i~f~~G-~ev~Ri   92 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVT---FTPTFVLMAGD-VESGRL   92 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCC---SSSEEEEEETT-EEEEEE
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCC---CCCEEEEEECC-EEEeee
Confidence            3457888999999998766544444 22221     33433  222   3577888888   58999999944 455678


Q ss_pred             CCcCCHHHHHHHHhc
Q 015368          248 RHQFTRLAIANFVTH  262 (408)
Q Consensus       248 ~g~~~~~~i~~fi~~  262 (408)
                      .|-...+.+..|++.
T Consensus        93 ~G~~~~~~f~~~L~~  107 (116)
T 3dml_A           93 EGYPGEDFFWPMLAR  107 (116)
T ss_dssp             ECCCCHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHH
Confidence            899999999999875

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=95.94  E-value=0.0063  Score=48.90  Aligned_cols=93  Identities=13%  Similarity=0.081  Sum_probs=63.4

Q ss_pred             cCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCc-cc
Q 015368          281 QDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAK-KY  357 (408)
Q Consensus       281 ~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~-~y  357 (408)
                      ..+.++++ ++.+||. |....+.|.+++..+...   +.|+.+|++...  ..+...+++.....|.+++++.+|+ ..
T Consensus        44 ~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~--~~~~~~~~~~~~~~Pt~~~~d~~G~~~~  118 (164)
T 1sen_A           44 ASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEE--EPKDEDFSPDGGYIPRILFLDPSGKVHP  118 (164)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGG--SCSCGGGCTTCSCSSEEEEECTTSCBCT
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCc--hHHHHHhcccCCcCCeEEEECCCCCEEE
Confidence            34445544 5566776 889999999987766544   567777766542  1256778886556899999976443 33


Q ss_pred             cCCC----------CCChHHHHHHHHHHhcC
Q 015368          358 VLNG----------ELTLSSIKSFGEEFLED  378 (408)
Q Consensus       358 ~~~~----------~~~~~~i~~Fi~~~~~g  378 (408)
                      .+.|          ..+.+++.++|+.+++.
T Consensus       119 ~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~  149 (164)
T 1sen_A          119 EIINENGNPSYKYFYVSAEQVVQGMKEAQER  149 (164)
T ss_dssp             TCCCTTSCTTSTTCCCSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCccchhcccCCHHHHHHHHHHHHHh
Confidence            3555          27789999999988764

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=95.89  E-value=0.013  Score=48.30  Aligned_cols=42  Identities=7%  Similarity=0.150  Sum_probs=36.1

Q ss_pred             CCcEEEEEecCCChhHHhhhHHH-HHHHHHhcCCcEEEEEeCc
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEF-AAAAKMLKGEADLVMVDAY  114 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~-~~~~~~~~~~v~~~~v~~~  114 (408)
                      .++++|.||..+||+|..+.+.+ .++.+.+.+++.+..+...
T Consensus        17 ~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~v~~~~~~l~   59 (195)
T 3c7m_A           17 ADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLE   59 (195)
T ss_dssp             CTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEECT
T ss_pred             CCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCceEEEEEecC
Confidence            56789999999999999999999 9999988777777777654

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=95.85  E-value=0.1  Score=40.30  Aligned_cols=89  Identities=10%  Similarity=0.089  Sum_probs=62.3

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHh-cCCcceEEEEEEEcCCcc----------------------cccchhhhc
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKAL-KGKVNMLLHVYVEMNSEG----------------------VGRRVSQEF  337 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~-~~~~~~i~f~~vd~~~~~----------------------~~~~l~~~~  337 (408)
                      +.++++ ++..+|. |......+.++++++ .++  ++.++.++.+...                      ....+++.|
T Consensus        33 gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (148)
T 3fkf_A           33 NRYLLLNFWASWCDPQPEANAELKRLNKEYKKNK--NFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQY  110 (148)
T ss_dssp             TSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCT--TEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHT
T ss_pred             CcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCC--CeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhc
Confidence            345444 5556766 999999999999999 543  2888888876531                      023677889


Q ss_pred             cCCCCCCcEEEEEccCCcc-ccCCCCCChHHHHHHHHHHhcC
Q 015368          338 GVSGNAPRVIAYSARDAKK-YVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       338 ~i~~~~~p~i~i~~~~~~~-y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      |+.  ..|.+++++.+|+. +...   +.+.+.++++.+++.
T Consensus       111 ~v~--~~P~~~lid~~G~i~~~~~---~~~~l~~~l~~ll~~  147 (148)
T 3fkf_A          111 AIL--TLPTNILLSPTGKILARDI---QGEALTGKLKELLKT  147 (148)
T ss_dssp             TCC--SSSEEEEECTTSBEEEESC---CHHHHHHHHHHHC--
T ss_pred             CCC--CcCEEEEECCCCeEEEecC---CHHHHHHHHHHHHcc
Confidence            985  46898888775543 3332   789999999988754

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=95.85  E-value=0.11  Score=43.40  Aligned_cols=41  Identities=20%  Similarity=0.229  Sum_probs=34.7

Q ss_pred             HHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          120 AKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       120 ~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++++||.|+||+++.++|+......|..+.+.+.+.|++.+
T Consensus       162 a~~~gv~g~Pt~~v~~~~~~~~~~~g~~~~e~~~~~i~~~~  202 (208)
T 3kzq_A          162 AKSLGVNSYPSLVLQINDAYFPIEVDYLSTEPTLKLIRERI  202 (208)
T ss_dssp             HHHTTCCSSSEEEEEETTEEEEECCCSSCSHHHHHHHHHHH
T ss_pred             HHHcCCCcccEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence            46789999999999888877777788889999998888765

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=95.71  E-value=0.09  Score=41.00  Aligned_cols=93  Identities=13%  Similarity=0.099  Sum_probs=63.6

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc--c-----------------ccchhhhccCCC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG--V-----------------GRRVSQEFGVSG  341 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~--~-----------------~~~l~~~~~i~~  341 (408)
                      +.++++ ++..+|. |......+.+++.++.++  ++.++.++.+...  .                 ...+.+.||+. 
T Consensus        28 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-  104 (152)
T 3gl3_A           28 GSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAK--GFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVK-  104 (152)
T ss_dssp             TSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGG--TEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCC-
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCC-
Confidence            345554 5556676 889999999999999864  2888888876431  0                 11456778884 


Q ss_pred             CCCcEEEEEccCCc-cccCCC--CCChHHHHHHHHHHhcCc
Q 015368          342 NAPRVIAYSARDAK-KYVLNG--ELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       342 ~~~p~i~i~~~~~~-~y~~~~--~~~~~~i~~Fi~~~~~gk  379 (408)
                       ..|.+++++.+|+ .+.+.|  ..+.+++.++|++.+.+.
T Consensus       105 -~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~~~~  144 (152)
T 3gl3_A          105 -GMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAALGGN  144 (152)
T ss_dssp             -SSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHTC--
T ss_pred             -CCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHHccc
Confidence             3688888877444 344555  346689999999998874

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=95.68  E-value=0.1  Score=40.74  Aligned_cols=91  Identities=13%  Similarity=0.039  Sum_probs=64.3

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc--c--------------------ccchhhhcc
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG--V--------------------GRRVSQEFG  338 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~--~--------------------~~~l~~~~~  338 (408)
                      +.++++ ++..+|. |......+.+++.++.++  ++.++.++.+...  +                    ...+.+.||
T Consensus        29 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (152)
T 2lrn_A           29 GKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDK--GFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC  106 (152)
T ss_dssp             TSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTT--TEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHhccC--CeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC
Confidence            345444 5556666 899999999999999863  2889998877521  0                    246778888


Q ss_pred             CCCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcCcc
Q 015368          339 VSGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       339 i~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      +.  ..|.+++++.+|+ .+.+   .+.+++.++|+.++++..
T Consensus       107 v~--~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~l~~~~~  144 (152)
T 2lrn_A          107 IV--GFPHIILVDPEGKIVAKE---LRGDDLYNTVEKFVNGAK  144 (152)
T ss_dssp             CC--SSCEEEEECTTSEEEEEC---CCTTHHHHHHHHHHTSSS
T ss_pred             CC--cCCeEEEECCCCeEEEee---CCHHHHHHHHHHHHhhcc
Confidence            85  3688888877544 3332   356899999999988754

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=95.58  E-value=0.058  Score=42.22  Aligned_cols=93  Identities=14%  Similarity=0.182  Sum_probs=62.4

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcc--------------------cccchhhhcc
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEG--------------------VGRRVSQEFG  338 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~--------------------~~~~l~~~~~  338 (408)
                      .+.++++ ++..+|. |......+.+++.++.+ .   +.++.++.+...                    -...+.+.||
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~---~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  103 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP---FRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYG  103 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSS---EEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC---eEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhC
Confidence            3445555 4555665 88999999999999987 4   889988877530                    0123667888


Q ss_pred             CCCCCCcEEEEEccCCc-cccCCCC--CChHHHHHHHHHHhcCc
Q 015368          339 VSGNAPRVIAYSARDAK-KYVLNGE--LTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       339 i~~~~~p~i~i~~~~~~-~y~~~~~--~~~~~i~~Fi~~~~~gk  379 (408)
                      +.  ..|.+++++.+|+ .+.+.|.  .+.+++.++|+.+..+.
T Consensus       104 v~--~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~  145 (154)
T 3kcm_A          104 TT--GVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKA  145 (154)
T ss_dssp             CC--SBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC----
T ss_pred             CC--CCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHh
Confidence            84  3688888877554 3445553  46789999999887663

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=95.38  E-value=0.075  Score=41.89  Aligned_cols=92  Identities=9%  Similarity=0.095  Sum_probs=64.8

Q ss_pred             CccEEE-EEeeCCC-chH-HHHHHHHHHHHhcCCcceEEEEEEEcCC-------------------------cccccc--
Q 015368          283 PRKQLW-LFAPAYG-SDK-VILTFEEVAKALKGKVNMLLHVYVEMNS-------------------------EGVGRR--  332 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~-~~~~~~~vA~~~~~~~~~i~f~~vd~~~-------------------------~~~~~~--  332 (408)
                      ++++++ ++..+|. |.. ....+.+++++++++  ++.++.++.+.                         .+-...  
T Consensus        30 gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  107 (160)
T 3lor_A           30 GKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDES--QVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQ  107 (160)
T ss_dssp             TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT--TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTC
T ss_pred             CCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcC--CcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccc
Confidence            445555 4556666 777 589999999999864  28888887520                         000112  


Q ss_pred             ----hhhhccCCCCCCcEEEEEccCC-ccccCCCCCChHHHHHHHHHHhcC
Q 015368          333 ----VSQEFGVSGNAPRVIAYSARDA-KKYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       333 ----l~~~~~i~~~~~p~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                          +.+.||+..  .|.+++++.+| ..+.+.|..+.+.+.++|+.+++.
T Consensus       108 ~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  156 (160)
T 3lor_A          108 RIPSTMKKYRLEG--TPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSE  156 (160)
T ss_dssp             SSCHHHHHTTCCS--SSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             hhhhHHHhcccCc--cceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhc
Confidence                677888843  68888888744 455567888999999999999875

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=95.24  E-value=0.11  Score=42.19  Aligned_cols=95  Identities=9%  Similarity=0.034  Sum_probs=63.3

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhc-CCcceEEEEEEEcCCc--ccccchhhhccCCC----------------
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALK-GKVNMLLHVYVEMNSE--GVGRRVSQEFGVSG----------------  341 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~-~~~~~i~f~~vd~~~~--~~~~~l~~~~~i~~----------------  341 (408)
                      ++++++ ++..+|. |......++++++++. ..   +.++.++.+..  +-...+++.++++.                
T Consensus        60 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~---~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  136 (186)
T 1jfu_A           60 GKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN---FEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLK  136 (186)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT---EEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHH
T ss_pred             CCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCC---cEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhc
Confidence            345444 4555665 8889999999999998 45   88888887653  11234556666631                


Q ss_pred             -----CCCcEEEEEccCCc-cccCCCCC--ChHHHHHHHHHHhcCcc
Q 015368          342 -----NAPRVIAYSARDAK-KYVLNGEL--TLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       342 -----~~~p~i~i~~~~~~-~y~~~~~~--~~~~i~~Fi~~~~~gk~  380 (408)
                           ...|.+++++.+|+ .+.+.|..  +.+++.++|+.++.++.
T Consensus       137 ~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~~a  183 (186)
T 1jfu_A          137 AIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATGKAA  183 (186)
T ss_dssp             TTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC---
T ss_pred             cccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHHhcccc
Confidence                 14788888887544 44566644  47899999999988753

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=95.19  E-value=0.062  Score=42.32  Aligned_cols=92  Identities=9%  Similarity=0.005  Sum_probs=65.0

Q ss_pred             CccEEE-EEeeCCC-chHH-HHHHHHHHHHhcCCcceEEEEEEEcCCc-------------------------cccc---
Q 015368          283 PRKQLW-LFAPAYG-SDKV-ILTFEEVAKALKGKVNMLLHVYVEMNSE-------------------------GVGR---  331 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~-~~~~~~vA~~~~~~~~~i~f~~vd~~~~-------------------------~~~~---  331 (408)
                      ++++++ ++..||. |... ...+.+++++++++  ++.|+.++.+..                         +-..   
T Consensus        28 gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  105 (158)
T 3eyt_A           28 GKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPED--KVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGA  105 (158)
T ss_dssp             TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTT--TEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSS
T ss_pred             CCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcC--CEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchh
Confidence            445555 5556676 8885 89999999999843  288888875310                         0011   


Q ss_pred             --chhhhccCCCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcC
Q 015368          332 --RVSQEFGVSGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       332 --~l~~~~~i~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                        .+.+.||+.  ..|.+++++.+|+ .+.+.|..+.+++.++|+.+++.
T Consensus       106 ~~~~~~~~~v~--~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  153 (158)
T 3eyt_A          106 MPRTMAAYQMR--GTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLGE  153 (158)
T ss_dssp             SCHHHHHTTCC--SSSEEEEECTTSEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHcCCC--CCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence              367788884  3688888887554 45567888999999999999875

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=95.16  E-value=0.043  Score=43.07  Aligned_cols=80  Identities=6%  Similarity=-0.023  Sum_probs=54.5

Q ss_pred             CCeEEEEEecCCCCcCHHHHHHHhccC--CceeEEEec--------------------------CHhHHhhcCCCCCCCC
Q 015368          180 ESKLVLGFLHDLEGMESEELAAASKLH--SDVNFYQTT--------------------------SADVAEFFHIHPKSKR  231 (408)
Q Consensus       180 ~~~~vi~f~~~~~~~~~~~~~~~a~~~--~~~~f~~~~--------------------------~~~l~~~~~i~~~~~~  231 (408)
                      ++++++.|+.+||.++......+.++.  +++.+..+.                          +..+++.|++.   +.
T Consensus        42 gk~~ll~f~~~~C~~C~~~~~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~---~~  118 (156)
T 1kng_A           42 GKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY---GV  118 (156)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCC---SS
T ss_pred             CCEEEEEEEcccCHhHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcC---cc
Confidence            567888899999998655544433221  446554432                          34677888988   58


Q ss_pred             CeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          232 PALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       232 p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      |+.+++..++.....+.|..+.+++.++|+.
T Consensus       119 P~~~~id~~G~i~~~~~g~~~~~~l~~~l~~  149 (156)
T 1kng_A          119 PETFVVGREGTIVYKLVGPITPDNLRSVLLP  149 (156)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHH
T ss_pred             CeEEEEcCCCCEEEEEeCCCCHHHHHHHHHH
Confidence            9888786655445567788888888888764

>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A

Probab=95.11  E-value=0.47  Score=33.97  Aligned_cols=82  Identities=11%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhc-C-CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHH
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLK-G-EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS  153 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~-~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~  153 (408)
                      ...+|.|..-+.+++....+.++-+.+. + .+.+-.||+.+++++++.++|-.+||++=.... ...+..|..-.+++.
T Consensus        13 L~lLyvag~tp~S~~ai~nL~~i~e~~l~~~~y~LeVIDv~eqPeLAE~~~IvATPTLIK~~P~-P~rriiGd~i~~ql~   91 (105)
T 1t4y_A           13 LLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPG-SRQVLSGIDLTDQLA   91 (105)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHHHCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESS-SCEEEESSCHHHHHH
T ss_pred             hheeeEeCCCccHHHHHHHHHHHHHHhccCCceEEEEeecccCHHHHhHcCeeeccHhhccCCC-CceEEeChHHHHHHH
Confidence            4546778888999999999988766654 3 899999999999999999999999999887765 678899998899999


Q ss_pred             HHHHh
Q 015368          154 AWVRE  158 (408)
Q Consensus       154 ~~i~~  158 (408)
                      .|.-+
T Consensus        92 ~wwpr   96 (105)
T 1t4y_A           92 NQLPQ   96 (105)
T ss_dssp             HHHHH
T ss_pred             HHhHH
Confidence            98754

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=94.95  E-value=0.11  Score=40.15  Aligned_cols=85  Identities=7%  Similarity=0.083  Sum_probs=56.3

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccc-----------------------cchhhhc
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVG-----------------------RRVSQEF  337 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~-----------------------~~l~~~~  337 (408)
                      +.++++ ++..+|. |......+.+++++++++  ++.|+.++.+... .                       ..+.+.|
T Consensus        31 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~v~v~~d~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  107 (148)
T 3hcz_A           31 AKYTILFFWDSQCGHCQQETPKLYDWWLKNRAK--GIQVYAANIERKD-EEWLKFIRSKKIGGWLNVRDSKNHTDFKITY  107 (148)
T ss_dssp             CSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGG--TEEEEEEECCSSS-HHHHHHHHHHTCTTSEEEECTTCCCCHHHHH
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHhccC--CEEEEEEEecCCH-HHHHHHHHHcCCCCceEEeccccchhHHHhc
Confidence            345444 5556665 889999999999999863  2899999887532 0                       0167788


Q ss_pred             cCCCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHH
Q 015368          338 GVSGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       338 ~i~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~  375 (408)
                      |+.  ..|.+++++.+|+ .+.+.|.   .++.++++.+
T Consensus       108 ~i~--~~P~~~lid~~G~i~~~~~g~---~~~~~~l~~l  141 (148)
T 3hcz_A          108 DIY--ATPVLYVLDKNKVIIAKRIGY---ENLDDFLVQY  141 (148)
T ss_dssp             CCC--SSCEEEEECTTCBEEEESCCG---GGHHHHHHHH
T ss_pred             CcC--CCCEEEEECCCCcEEEecCCH---HHHHHHHHHH
Confidence            884  3689999887444 4445554   4455555444

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=94.87  E-value=0.069  Score=43.86  Aligned_cols=91  Identities=16%  Similarity=0.138  Sum_probs=63.8

Q ss_pred             EEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--------------------------ccccchhhhc
Q 015368          286 QLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--------------------------GVGRRVSQEF  337 (408)
Q Consensus       286 ~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--------------------------~~~~~l~~~~  337 (408)
                      +++. +..+|. |......+.+++.++.++  ++.++.++.+..                          +-...+.+.|
T Consensus        49 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  126 (196)
T 2ywi_A           49 TVIMFICNHCPFVKHVQHELVRLANDYMPK--GVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAKAY  126 (196)
T ss_dssp             EEEEECCSSCHHHHHHHHHHHHHHHHHGGG--TCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHHHH
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHHHh
Confidence            5554 445565 888899999999999753  288888887421                          0023566777


Q ss_pred             cCCCCCCcEEEEEccCCc-ccc---------CCCCCChHHHHHHHHHHhcCcc
Q 015368          338 GVSGNAPRVIAYSARDAK-KYV---------LNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       338 ~i~~~~~p~i~i~~~~~~-~y~---------~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      |+.  ..|.+++++.+|+ .+.         +.|..+.++|.+.|+.+++++-
T Consensus       127 ~v~--~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  177 (196)
T 2ywi_A          127 DAA--CTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGRP  177 (196)
T ss_dssp             TCC--EESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTCC
T ss_pred             CCC--CCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCCC
Confidence            774  3588888877443 333         4577789999999999998865

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=94.66  E-value=0.05  Score=39.93  Aligned_cols=74  Identities=8%  Similarity=0.042  Sum_probs=54.7

Q ss_pred             EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCCCCC
Q 015368          286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELT  364 (408)
Q Consensus       286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~  364 (408)
                      ++++..+++. |+.....+.+++.++.     +.|..+|.+++   +.+...||+.   .|.++++.. ++.. ..|.++
T Consensus        32 vv~y~~~~C~~C~~a~~~L~~l~~e~~-----i~~~~vDId~d---~~l~~~ygv~---VP~l~~~~d-G~~v-~~g~~~   98 (107)
T 2fgx_A           32 LVVYGREGCHLCEEMIASLRVLQKKSW-----FELEVINIDGN---EHLTRLYNDR---VPVLFAVNE-DKEL-CHYFLD   98 (107)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHSC-----CCCEEEETTTC---HHHHHHSTTS---CSEEEETTT-TEEE-ECSSCC
T ss_pred             EEEEeCCCChhHHHHHHHHHHHHHhcC-----CeEEEEECCCC---HHHHHHhCCC---CceEEEEEC-CEEE-EecCCC
Confidence            4445556776 9999999999998874     77889998764   4677889983   788876643 3332 357788


Q ss_pred             hHHHHHHH
Q 015368          365 LSSIKSFG  372 (408)
Q Consensus       365 ~~~i~~Fi  372 (408)
                      .+.|.+||
T Consensus        99 ~~~L~~~L  106 (107)
T 2fgx_A           99 SDVIGAYL  106 (107)
T ss_dssp             CHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999987

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=94.57  E-value=0.055  Score=42.58  Aligned_cols=75  Identities=5%  Similarity=-0.071  Sum_probs=45.9

Q ss_pred             HHHHhccCCeEEEEEecCCCCcCHHHHHHH------hccC-CceeEEEe--cCHhHHhhcCCCCCCCCCeEEEeecCCCc
Q 015368          173 AERILTVESKLVLGFLHDLEGMESEELAAA------SKLH-SDVNFYQT--TSADVAEFFHIHPKSKRPALIFLHLEAGK  243 (408)
Q Consensus       173 ~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~------a~~~-~~~~f~~~--~~~~l~~~~~i~~~~~~p~l~~~~~~~~~  243 (408)
                      +......+++++|.|+++||.++...-...      ..+. .++....+  ...++...+++.   +.|++++++.++..
T Consensus        37 l~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~---~~PT~~f~~~~G~~  113 (151)
T 3ph9_A           37 LFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQ---YVPRIMFVDPSLTV  113 (151)
T ss_dssp             HHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCC---CSSEEEEECTTSCB
T ss_pred             HHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCC---CCCEEEEECCCCCE
Confidence            444556788999999999999855432211      1111 12333333  223466778887   69999999865544


Q ss_pred             ccccCCc
Q 015368          244 ATPFRHQ  250 (408)
Q Consensus       244 ~~~y~g~  250 (408)
                      .....|.
T Consensus       114 v~~~~G~  120 (151)
T 3ph9_A          114 RADIAGR  120 (151)
T ss_dssp             CTTCCCS
T ss_pred             EEEEeCC
Confidence            4555565

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=94.45  E-value=0.14  Score=41.69  Aligned_cols=93  Identities=11%  Similarity=0.079  Sum_probs=63.9

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--------------------------ccccchh
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--------------------------GVGRRVS  334 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--------------------------~~~~~l~  334 (408)
                      ++++++ ++..+|. |......+++++.++.++   +.++.++.+..                          +-...+.
T Consensus        33 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~  109 (188)
T 2cvb_A           33 EPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  109 (188)
T ss_dssp             SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHH
Confidence            345444 4555665 778888999999999987   89999887421                          0023566


Q ss_pred             hhccCCCCCCcEEEEEccCCc-ccc--------CCCCCChHHHHHHHHHHhcCcc
Q 015368          335 QEFGVSGNAPRVIAYSARDAK-KYV--------LNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       335 ~~~~i~~~~~p~i~i~~~~~~-~y~--------~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      +.||+.  ..|.+++++.+|+ .+.        +.+..+.++|.+.|+.+++++-
T Consensus       110 ~~~~v~--~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~~~  162 (188)
T 2cvb_A          110 KAYRAL--RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  162 (188)
T ss_dssp             HHTTCC--EESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             HHcCCC--CCCeEEEECCCCcEEEEEecCCccccccccCHHHHHHHHHHHHcCCC
Confidence            777774  3688888877444 332        1123468899999999998865

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=94.29  E-value=0.24  Score=38.95  Aligned_cols=87  Identities=14%  Similarity=0.179  Sum_probs=57.0

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc----------------ccccchhhhccCCCCCC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE----------------GVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~----------------~~~~~l~~~~~i~~~~~  344 (408)
                      +.++++ ++..+|. |......+.+++.++...  ++.|+.++.+..                +-...+.+.||+.  ..
T Consensus        41 gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--~~  116 (158)
T 3hdc_A           41 GKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKG--DLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGAN--RL  116 (158)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTT--SEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCC--SS
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHcccC--CeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCC--Cc
Confidence            445555 4555665 889999999999999842  299999998751                0023667888885  36


Q ss_pred             cEEEEEccCCc-cccCCC--CCChHHHHHHHH
Q 015368          345 RVIAYSARDAK-KYVLNG--ELTLSSIKSFGE  373 (408)
Q Consensus       345 p~i~i~~~~~~-~y~~~~--~~~~~~i~~Fi~  373 (408)
                      |.+++++.+|+ .+.+.|  ..+..++.+.+.
T Consensus       117 P~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~  148 (158)
T 3hdc_A          117 PDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLK  148 (158)
T ss_dssp             SEEEEECTTSBEEEEEESCCCTTSHHHHHHHH
T ss_pred             ceEEEEcCCCCEEEEEeCCCccchHHHHHHHH
Confidence            88888877444 445555  344455555444

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=94.26  E-value=0.078  Score=44.42  Aligned_cols=45  Identities=13%  Similarity=0.170  Sum_probs=38.6

Q ss_pred             cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       116 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +...++++||.|+||++++.+|+....+.|..+.+.+.+.|.+.+
T Consensus       165 ~~~~a~~~gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~  209 (216)
T 2in3_A          165 GFQRVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWL  209 (216)
T ss_dssp             HHHHHHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHHH
Confidence            345678899999999999999976667889999999999998765

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=94.19  E-value=0.13  Score=41.50  Aligned_cols=84  Identities=6%  Similarity=-0.031  Sum_probs=56.4

Q ss_pred             HHHhHhCCCccccc-ChhHHHHHhccCCeEEEEEecCCCCcCHHHHH------HHh-ccCCceeEEEe---cCHhHHhhc
Q 015368          155 WVREKMTLGTYSIT-TTDEAERILTVESKLVLGFLHDLEGMESEELA------AAS-KLHSDVNFYQT---TSADVAEFF  223 (408)
Q Consensus       155 ~i~~~~~~~~~~i~-~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~------~~a-~~~~~~~f~~~---~~~~l~~~~  223 (408)
                      ++.++...++.=.. +.+.++.....+++++|.|+.+||.++...-.      .++ .+..++.+..+   ..+++.+.|
T Consensus        13 yl~~ha~~~v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y   92 (173)
T 3ira_A           13 YLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIY   92 (173)
T ss_dssp             HHHTTTTSSSCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHH
T ss_pred             HHHhccCCCCCCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHH
Confidence            45666666654332 46778888888999999999999998655322      223 23335555544   345677777


Q ss_pred             --------CCCCCCCCCeEEEeecCC
Q 015368          224 --------HIHPKSKRPALIFLHLEA  241 (408)
Q Consensus       224 --------~i~~~~~~p~l~~~~~~~  241 (408)
                              ++.   +.|+++++..++
T Consensus        93 ~~~~q~~~gv~---g~Pt~v~l~~dG  115 (173)
T 3ira_A           93 MTVCQIILGRG---GWPLNIIMTPGK  115 (173)
T ss_dssp             HHHHHHHHSCC---CSSEEEEECTTS
T ss_pred             HHHHHHHcCCC---CCcceeeECCCC
Confidence                    887   699999998654

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=94.10  E-value=0.19  Score=39.61  Aligned_cols=89  Identities=16%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             CccEEEEEe-eCCC-chHHHHHH---HHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccC-Ccc
Q 015368          283 PRKQLWLFA-PAYG-SDKVILTF---EEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARD-AKK  356 (408)
Q Consensus       283 ~~~~~i~f~-~~~~-~~~~~~~~---~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~-~~~  356 (408)
                      ++|+++.|. +||. |+......   .+|+...+.+   +.++.+|.+..+ ...+++.|++.  .+|.+++++.+ |+.
T Consensus        42 ~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~---fv~v~~d~~~~~-~~~l~~~y~v~--~~P~~~fld~~~G~~  115 (153)
T 2dlx_A           42 NKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEE-GQRYIQFYKLG--DFPYVSILDPRTGQK  115 (153)
T ss_dssp             TCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHH-HHHHHHHHTCC--SSSEEEEECTTTCCC
T ss_pred             CCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC---eEEEEEecCCHh-HHHHHHHcCCC--CCCEEEEEeCCCCcE
Confidence            446655444 5555 66554432   3677777667   999999987654 56788999995  47899999874 543


Q ss_pred             c-cCCCCCChHHHHHHHHHHhcC
Q 015368          357 Y-VLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       357 y-~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      . ...| ++.+++.++++.+++.
T Consensus       116 l~~~~g-~~~~~fl~~L~~~l~~  137 (153)
T 2dlx_A          116 LVEWHQ-LDVSSFLDQVTGFLGE  137 (153)
T ss_dssp             CEEESS-CCHHHHHHHHHHHHHH
T ss_pred             eeecCC-CCHHHHHHHHHHHHHh
Confidence            3 3456 8999999989888753

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=94.05  E-value=0.17  Score=35.53  Aligned_cols=72  Identities=8%  Similarity=0.132  Sum_probs=48.8

Q ss_pred             EEEEecCCCCcCHHHHHHHhccCCc--eeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHh
Q 015368          184 VLGFLHDLEGMESEELAAASKLHSD--VNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVT  261 (408)
Q Consensus       184 vi~f~~~~~~~~~~~~~~~a~~~~~--~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~  261 (408)
                      ++.|+.+||.++...-..+.+....  ..+-...+++++++|++.    .|++++ ..+  ... . |.++.+.|.+|+.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~~~~vdid~~~~l~~~~g~~----vPtl~~-~~G--~~v-~-g~~~~~~L~~~l~   73 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDDAALESAYGLR----VPVLRD-PMG--REL-D-WPFDAPRLRAWLD   73 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCCEEEEECTTCHHHHHHHTTT----CSEEEC-TTC--CEE-E-SCCCHHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhheEEEECCCCHHHHHHhCCC----cCeEEE-ECC--EEE-e-CCCCHHHHHHHHH
Confidence            5679999999876655544433332  222333678899999986    799987 432  333 2 7889999999997


Q ss_pred             cCC
Q 015368          262 HTK  264 (408)
Q Consensus       262 ~~~  264 (408)
                      ...
T Consensus        74 ~~~   76 (87)
T 1ttz_A           74 AAP   76 (87)
T ss_dssp             TCC
T ss_pred             HHH
Confidence            543

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=93.75  E-value=0.11  Score=41.34  Aligned_cols=88  Identities=11%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--------------------ccccchhhhccC
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--------------------GVGRRVSQEFGV  339 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~~i  339 (408)
                      .+.++++ ++..+|. |......+.+++++   .   +.++.++.++.                    +-...+.+.||+
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~---~---v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  123 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---G---IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV  123 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT---T---CCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHC---C---CEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCc
Confidence            4445554 4555665 88888889988876   3   66666663221                    012356677888


Q ss_pred             CCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhc
Q 015368          340 SGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      ..  .|..++++.+|+ .+.+.|..+.+.+.++|+.+++
T Consensus       124 ~~--~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~  160 (168)
T 2b1k_A          124 YG--APETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  160 (168)
T ss_dssp             CS--SSEEEEECTTSBEEEEEESCCCHHHHHHTTHHHHH
T ss_pred             cc--cCEEEEECCCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence            43  687777766444 4556788889999998888764

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=93.68  E-value=0.087  Score=42.56  Aligned_cols=80  Identities=6%  Similarity=-0.011  Sum_probs=52.7

Q ss_pred             CCeEEEEEecCCCCcCHHHHHHHhccC-CceeEEEe--------------------------cCHhHHhhcCCCCCCCCC
Q 015368          180 ESKLVLGFLHDLEGMESEELAAASKLH-SDVNFYQT--------------------------TSADVAEFFHIHPKSKRP  232 (408)
Q Consensus       180 ~~~~vi~f~~~~~~~~~~~~~~~a~~~-~~~~f~~~--------------------------~~~~l~~~~~i~~~~~~p  232 (408)
                      ++.++|.|+.+||.++......+.++. .++.+..+                          .+..+.+.|++.   +.|
T Consensus        58 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~---~~P  134 (176)
T 3kh7_A           58 GKPALVNVWGTWCPSCRVEHPELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVY---GAP  134 (176)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCC---SSC
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCC---CCC
Confidence            467788888999987655544433211 13444332                          234677888887   589


Q ss_pred             eEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          233 ALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       233 ~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      +.+++...+.....+.|..+.+.+.++|..
T Consensus       135 ~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  164 (176)
T 3kh7_A          135 ETYLIDKQGIIRHKIVGVVDQKVWREQLAP  164 (176)
T ss_dssp             EEEEECTTCBEEEEEESCCCHHHHHHHTHH
T ss_pred             eEEEECCCCeEEEEEcCCCCHHHHHHHHHH
Confidence            888887766555677788888888877754

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=93.53  E-value=0.33  Score=37.15  Aligned_cols=88  Identities=9%  Similarity=0.113  Sum_probs=56.2

Q ss_pred             CccEEEE-EeeCCC-chHHHHHHHH---HHHHhcCCcceEEEEEEEcCCcc-cccch--------------------hhh
Q 015368          283 PRKQLWL-FAPAYG-SDKVILTFEE---VAKALKGKVNMLLHVYVEMNSEG-VGRRV--------------------SQE  336 (408)
Q Consensus       283 ~~~~~i~-f~~~~~-~~~~~~~~~~---vA~~~~~~~~~i~f~~vd~~~~~-~~~~l--------------------~~~  336 (408)
                      +.++++. +..+|. |......+.+   ++++++++  ++.++.++.+... -...+                    .+.
T Consensus        27 gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  104 (142)
T 3ewl_A           27 AQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENG--TLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL  104 (142)
T ss_dssp             CSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHT--SEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccC--CeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence            4455554 445665 8888777777   88888643  2888888876431 00011                    236


Q ss_pred             ccCCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          337 FGVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       337 ~~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      ||+.  ..|.+++++.+|+...  +..+.+++.+++++..
T Consensus       105 ~~v~--~~P~~~lid~~G~i~~--~~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A          105 YDIR--ATPTIYLLDGRKRVIL--KDTSMEQLIDYLATQA  140 (142)
T ss_dssp             SCCC--SSSEEEEECTTCBEEE--CSCCHHHHHHHHHC--
T ss_pred             cCCC--CCCeEEEECCCCCEEe--cCCCHHHHHHHHHHHc
Confidence            7774  4688888887555432  4578999999998764

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=93.34  E-value=0.13  Score=45.29  Aligned_cols=81  Identities=12%  Similarity=-0.101  Sum_probs=52.9

Q ss_pred             hHHHHHhccCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEe----cCHhHHhhcCCCCCCCCCeEEEeecCCCc
Q 015368          171 DEAERILTVESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQT----TSADVAEFFHIHPKSKRPALIFLHLEAGK  243 (408)
Q Consensus       171 ~~~~~~~~~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~----~~~~l~~~~~i~~~~~~p~l~~~~~~~~~  243 (408)
                      ..+.+.+.+..  ++.|+.+||.++.+   .+.++++....+.+...    .+++++++++++   ++|++++  ++  +
T Consensus       190 ~~la~~l~~~~--vV~F~A~WC~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~la~~~gI~---~vPT~~i--~G--~  260 (291)
T 3kp9_A          190 VGLAAHLRQIG--GTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGIT---SYPTWII--NG--R  260 (291)
T ss_dssp             HHHHHHHHHTT--CEEEECTTCHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCHHHHTTTCC---STTEEEE--TT--E
T ss_pred             HHHHHHhCCCC--EEEEECCCCHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHHHHHHcCCc---ccCeEEE--CC--E
Confidence            34455555444  57799999998554   44444422222222211    157899999999   6999664  32  2


Q ss_pred             ccccCCcCCHHHHHHHHhc
Q 015368          244 ATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       244 ~~~y~g~~~~~~i~~fi~~  262 (408)
                        .|.|..+.+++.+|+..
T Consensus       261 --~~~G~~~~~~L~~~l~~  277 (291)
T 3kp9_A          261 --TYTGVRSLEALAVASGY  277 (291)
T ss_dssp             --EEESCCCHHHHHHHTCC
T ss_pred             --EecCCCCHHHHHHHHCC
Confidence              39999999999999964

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=93.20  E-value=0.33  Score=40.70  Aligned_cols=91  Identities=14%  Similarity=0.152  Sum_probs=63.7

Q ss_pred             EEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--------------------------ccccchhhhc
Q 015368          286 QLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--------------------------GVGRRVSQEF  337 (408)
Q Consensus       286 ~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--------------------------~~~~~l~~~~  337 (408)
                      +++. +..+|. |......|.+++++++++  ++.|+.++.+..                          +-...+.+.|
T Consensus        62 vll~F~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~  139 (218)
T 3u5r_E           62 LLVAFISNRCPFVVLIREALAKFAGDYAGQ--GLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAKAY  139 (218)
T ss_dssp             EEEEECCSSCHHHHTTHHHHHHHHHHHTTT--TEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHHHH
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHHHHhC--CcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHHHc
Confidence            4444 445565 788889999999999864  288888887421                          0124667788


Q ss_pred             cCCCCCCcEEEEEccCCc-ccc---------CCCCCChHHHHHHHHHHhcCcc
Q 015368          338 GVSGNAPRVIAYSARDAK-KYV---------LNGELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       338 ~i~~~~~p~i~i~~~~~~-~y~---------~~~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      |+..  .|.+++++.+|+ .|.         ..+..+.++|.+.|+.+++|+-
T Consensus       140 ~v~~--~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~~~  190 (218)
T 3u5r_E          140 GAAC--TPDFFLYDRERRLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKGKD  190 (218)
T ss_dssp             TCCE--ESEEEEECTTCBEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTTCC
T ss_pred             CCCC--CCeEEEECCCCcEEEeccccccccccccccCHHHHHHHHHHHHcCCC
Confidence            8843  588888887544 332         1234678999999999999976

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=93.20  E-value=0.22  Score=45.21  Aligned_cols=92  Identities=12%  Similarity=0.008  Sum_probs=65.1

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc------------------------cccchhhh
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG------------------------VGRRVSQE  336 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~------------------------~~~~l~~~  336 (408)
                      ++++++ ++..||. |......+.+++.+++++  ++.++.++++...                        -...+.+.
T Consensus        82 GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~--~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~  159 (352)
T 2hyx_A           82 GKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDS--GLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTN  159 (352)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHH
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHhhcC--CeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHH
Confidence            345555 4556666 899999999999999862  2899988764210                        01356677


Q ss_pred             ccCCCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcC
Q 015368          337 FGVSGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       337 ~~i~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      |++.  ..|.+++++.+|+ .+.+.|..+.+++.++|++++..
T Consensus       160 ygV~--~~Pt~~lID~~G~Iv~~~~G~~~~~~l~~~I~~lL~e  200 (352)
T 2hyx_A          160 YRNR--YWPAEYLIDATGTVRHIKFGEGDYNVTETLVRQLLND  200 (352)
T ss_dssp             TTCC--EESEEEEECTTSBEEEEEESBCCHHHHHHHHHHHHHH
T ss_pred             cCCC--ccCEEEEEeCCCeEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            8874  3688888877444 45567778899999999998854

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=92.95  E-value=0.14  Score=41.69  Aligned_cols=42  Identities=10%  Similarity=0.086  Sum_probs=34.1

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHh-cCCcEEEEEeC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDA  113 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~-~~~v~~~~v~~  113 (408)
                      ..+.++|.|....||+|+++.+.+.++.+++ .++|.++--+.
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~   55 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQ   55 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEc
Confidence            4578899999999999999999998877776 55777776653

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=92.72  E-value=0.23  Score=39.79  Aligned_cols=78  Identities=13%  Similarity=-0.053  Sum_probs=49.2

Q ss_pred             cCCeEEEEEecCCCCcCHH---HHHHHhccCCceeEEEec---CHhHHhhcC---CCCCCCCCeEEEeecCCCcccccCC
Q 015368          179 VESKLVLGFLHDLEGMESE---ELAAASKLHSDVNFYQTT---SADVAEFFH---IHPKSKRPALIFLHLEAGKATPFRH  249 (408)
Q Consensus       179 ~~~~~vi~f~~~~~~~~~~---~~~~~a~~~~~~~f~~~~---~~~l~~~~~---i~~~~~~p~l~~~~~~~~~~~~y~g  249 (408)
                      .++++++.|+++||.++..   .+..++...+++.|..+.   +.+++..|.   +.   +.|++++++.++.....+ |
T Consensus        53 ~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~~~~~~~~~v~---~iPt~i~~~~~G~~~~~~-g  128 (167)
T 1z6n_A           53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLALERI---AIPLVLVLDEEFNLLGRF-V  128 (167)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTCSSC---CSSEEEEECTTCCEEEEE-E
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHHHHHHHcCCC---CcCeEEEECCCCCEEEEE-c
Confidence            3567888899999998644   455555434567777653   445667776   65   699999998764333334 3


Q ss_pred             cCCHHHHHHHHh
Q 015368          250 QFTRLAIANFVT  261 (408)
Q Consensus       250 ~~~~~~i~~fi~  261 (408)
                      ... ..+...+.
T Consensus       129 ~~p-~~~~~~i~  139 (167)
T 1z6n_A          129 ERP-QAVLDGGP  139 (167)
T ss_dssp             SSC-HHHHHHCH
T ss_pred             CCC-HHHHHhHH
Confidence            332 33444444

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=92.68  E-value=0.43  Score=35.66  Aligned_cols=59  Identities=7%  Similarity=0.035  Sum_probs=36.4

Q ss_pred             EEEEEecCCChhHHhhh--HHHHHHHHHhcCCcEEEEEeCcccHh----HHHHc--------CCCcCcEEEEEeCCe
Q 015368           76 VMVMFYANWCYWSKKLA--PEFAAAAKMLKGEADLVMVDAYLEKD----LAKEY--------NILAYPTLYLFVAGV  138 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~--p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~--------~i~~~Pt~~~~~~g~  138 (408)
                      +++.|.+++|+.|+-..  -...++-+..  +|.|-.+|++.+++    +.++.        |...+|.++  .+|.
T Consensus         1 ~V~vYtt~~c~~c~~kk~c~~aK~lL~~k--gV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIF--i~~~   73 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQQDVLGFLEAN--KIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIF--NESQ   73 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHHHHHHHHHHHT--TCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEE--ETTE
T ss_pred             CEEEEecCCCCCccchHHHHHHHHHHHHC--CCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEE--ECCE
Confidence            46678899999994211  1122222222  78999999986643    44566        777788654  4663

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=92.46  E-value=0.26  Score=36.74  Aligned_cols=67  Identities=16%  Similarity=0.308  Sum_probs=42.6

Q ss_pred             hhhHHHHHcCCCcEEEEEe----cCCChhHHhhhHHHHHHHHHhcCCc-EEEEEeCcccHhH----HHHcCCCcCcEEEE
Q 015368           63 GKNFSEFMGKNRNVMVMFY----ANWCYWSKKLAPEFAAAAKMLKGEA-DLVMVDAYLEKDL----AKEYNILAYPTLYL  133 (408)
Q Consensus        63 ~~~~~~~~~~~~~~~v~f~----a~wC~~C~~~~p~~~~~~~~~~~~v-~~~~v~~~~~~~~----~~~~~i~~~Pt~~~  133 (408)
                      .+.+++.+.+++ |+|+--    +|.|+.|++....+...      ++ .+..+|+++++++    .+.-|-+.+|.++ 
T Consensus        10 ~e~i~~~i~~~~-VvvF~Kgt~~~P~C~fc~~ak~lL~~~------gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIF-   81 (118)
T 2wul_A           10 AEQLDALVKKDK-VVVFLKGTPEQPQCGFSNAVVQILRLH------GVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVY-   81 (118)
T ss_dssp             HHHHHHHHHHSS-EEEEESBCSSSBSSHHHHHHHHHHHHT------TCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEE-
T ss_pred             HHHHHHHHhcCC-EEEEEcCCCCCCCCHHHHHHHHHHHHh------CCcCeEeecccCCHHHHHHHHHhccCCCCCeEe-
Confidence            455667776654 444322    26799999987666432      34 3677888777654    3445777899874 


Q ss_pred             EeCCe
Q 015368          134 FVAGV  138 (408)
Q Consensus       134 ~~~g~  138 (408)
                       -+|+
T Consensus        82 -I~g~   85 (118)
T 2wul_A           82 -LNGE   85 (118)
T ss_dssp             -ETTE
T ss_pred             -ECCE
Confidence             4674

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=92.35  E-value=0.61  Score=36.60  Aligned_cols=90  Identities=9%  Similarity=0.058  Sum_probs=60.9

Q ss_pred             CccEEE-EEeeCCC--chHHHHHHHHHHHHhcC-----CcceEEEEEEEcCCcc-------------------------c
Q 015368          283 PRKQLW-LFAPAYG--SDKVILTFEEVAKALKG-----KVNMLLHVYVEMNSEG-------------------------V  329 (408)
Q Consensus       283 ~~~~~i-~f~~~~~--~~~~~~~~~~vA~~~~~-----~~~~i~f~~vd~~~~~-------------------------~  329 (408)
                      +.++++ ++..+|.  |......++++..+++.     +   +.++.++.+...                         -
T Consensus        23 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~---~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~   99 (164)
T 2ggt_A           23 GQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPD---LTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREE   99 (164)
T ss_dssp             TCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCC---EEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHH
T ss_pred             CCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCc---EEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHH
Confidence            445444 4556776  88999999999999864     5   888888875420                         0


Q ss_pred             ccchhhhccCCCCCCc---------------EEEEEccCC-ccccCCCCCChHHHHHHHHHHhc
Q 015368          330 GRRVSQEFGVSGNAPR---------------VIAYSARDA-KKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       330 ~~~l~~~~~i~~~~~p---------------~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      ...+.+.||+..  .|               .+++++.+| ..+.+.|..+.++|.+.|+.++.
T Consensus       100 ~~~~~~~~~v~~--~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  161 (164)
T 2ggt_A          100 VDQVARAYRVYY--SPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  161 (164)
T ss_dssp             HHHHHHTTTCCE--EEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHG
T ss_pred             HHHHHHhcCeEE--EecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            113556777743  34               677777744 44556777889999999988764

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=92.29  E-value=1.9  Score=33.15  Aligned_cols=88  Identities=15%  Similarity=0.137  Sum_probs=60.6

Q ss_pred             CccEEE-EEeeCC-C--chHHHHHHHHHHHHh-cCCcceEEEEEEEcCCcc--c--------------------ccchhh
Q 015368          283 PRKQLW-LFAPAY-G--SDKVILTFEEVAKAL-KGKVNMLLHVYVEMNSEG--V--------------------GRRVSQ  335 (408)
Q Consensus       283 ~~~~~i-~f~~~~-~--~~~~~~~~~~vA~~~-~~~~~~i~f~~vd~~~~~--~--------------------~~~l~~  335 (408)
                      +.++++ ++..+| .  |......+.++++++ +++  ++.++.++.+...  +                    ...+.+
T Consensus        33 gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~--~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  110 (150)
T 3fw2_A           33 QKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK--YIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAK  110 (150)
T ss_dssp             TSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCS--SEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             CCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCC--CeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHH
Confidence            445555 455665 4  688999999999999 543  3888888876531  0                    135677


Q ss_pred             hccCCCCCCcEEEEEccCCcc-ccCCCCCChHHHHHHHHHHhc
Q 015368          336 EFGVSGNAPRVIAYSARDAKK-YVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       336 ~~~i~~~~~p~i~i~~~~~~~-y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .||+.  ..|.+++++.+|+. +..   .+.+++.+.|+.+++
T Consensus       111 ~~~v~--~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~ll~  148 (150)
T 3fw2_A          111 QYSIY--KIPANILLSSDGKILAKN---LRGEELKKKIENIVE  148 (150)
T ss_dssp             HTTCC--SSSEEEEECTTSBEEEES---CCHHHHHHHHHHHHH
T ss_pred             HcCCC--ccCeEEEECCCCEEEEcc---CCHHHHHHHHHHHHh
Confidence            88885  46888888875543 333   278889999888764

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=92.24  E-value=0.11  Score=46.77  Aligned_cols=68  Identities=12%  Similarity=0.214  Sum_probs=38.4

Q ss_pred             HHHHHcCCCcEEEEEecCCChhHHhhhH-HHHHHHHHhcCCcEEEEEeC-ccc----HhHHHHcCCCcCcEEEEEeCCe
Q 015368           66 FSEFMGKNRNVMVMFYANWCYWSKKLAP-EFAAAAKMLKGEADLVMVDA-YLE----KDLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p-~~~~~~~~~~~~v~~~~v~~-~~~----~~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      +++++..++  ++.|..+||++|++... .+++..-.+. .+.++.+|- +++    ..+.+..|.+.+|+++  -+|+
T Consensus       254 V~~lI~~~~--VvVYsk~~CPyC~~Ak~~LL~~~gV~y~-eidVlEld~~~~~~e~~~~L~~~tG~~TVPqVF--I~Gk  327 (362)
T 2jad_A          254 VKDLIAENE--IFVASKTYCPYSHAALNTLFEKLKVPRS-KVLVLQLNDMKEGADIQAALYEINGQRTVPNIY--INGK  327 (362)
T ss_dssp             HHHHHHTCS--EEEEECTTCHHHHHHHHHHHTTTCCCTT-TEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEEE--ETTE
T ss_pred             HHHHhccCC--EEEEEcCCCcchHHHHHHHHHHcCCCcc-eEEEEEeccccCCHHHHHHHHHHHCCCCcCEEE--ECCE
Confidence            345555543  45588999999998764 3443221111 233333321 222    3345667999999874  3774

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=92.07  E-value=0.58  Score=35.86  Aligned_cols=68  Identities=9%  Similarity=0.043  Sum_probs=48.4

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcC--CcceEEEEEEEcCCcc---------------------cccchhhhc
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKG--KVNMLLHVYVEMNSEG---------------------VGRRVSQEF  337 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~--~~~~i~f~~vd~~~~~---------------------~~~~l~~~~  337 (408)
                      +.++++ ++..+|. |......+.++++++++  .   +.++.++.+...                     -...+.+.|
T Consensus        28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~---~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  104 (144)
T 1i5g_A           28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN---FEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGF  104 (144)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT---EEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCC---EEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHc
Confidence            445544 4555666 88999999999999984  5   999999887521                     024577788


Q ss_pred             cCCCCCCcEEEEEc-cCCc
Q 015368          338 GVSGNAPRVIAYSA-RDAK  355 (408)
Q Consensus       338 ~i~~~~~p~i~i~~-~~~~  355 (408)
                      |+.  ..|.+++++ .+|+
T Consensus       105 ~v~--~~P~~~lid~~~G~  121 (144)
T 1i5g_A          105 DVK--SIPTLVGVEADSGN  121 (144)
T ss_dssp             TCC--SSSEEEEEETTTCC
T ss_pred             CCC--CCCEEEEEECCCCc
Confidence            884  468888888 5444

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=91.94  E-value=0.13  Score=44.43  Aligned_cols=29  Identities=10%  Similarity=0.170  Sum_probs=25.0

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHH
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKM  101 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~  101 (408)
                      ++.+++.|+.+.||+|+++.+.+.+..+.
T Consensus       147 gk~~I~vFtDp~CPYCkkl~~~l~~~l~~  175 (273)
T 3tdg_A          147 KDKILYIVSDPMCPHCQKELTKLRDHLKE  175 (273)
T ss_dssp             TTCEEEEEECTTCHHHHHHHHTHHHHHHH
T ss_pred             CCeEEEEEECcCChhHHHHHHHHHHHhhC
Confidence            56899999999999999999999865543

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=91.74  E-value=0.68  Score=35.60  Aligned_cols=68  Identities=10%  Similarity=0.113  Sum_probs=48.3

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhc--CCcceEEEEEEEcCCcc---------------------cccchhhhc
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALK--GKVNMLLHVYVEMNSEG---------------------VGRRVSQEF  337 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~--~~~~~i~f~~vd~~~~~---------------------~~~~l~~~~  337 (408)
                      +.++++ ++..+|. |......+.+++++++  ++   +.++.++.+...                     -...+.+.|
T Consensus        28 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~---~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  104 (146)
T 1o8x_A           28 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKN---FEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHF  104 (146)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT---EEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHT
T ss_pred             CCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCC---eEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHh
Confidence            345544 4555666 8899999999999998  35   999999887531                     024677888


Q ss_pred             cCCCCCCcEEEEEc-cCCc
Q 015368          338 GVSGNAPRVIAYSA-RDAK  355 (408)
Q Consensus       338 ~i~~~~~p~i~i~~-~~~~  355 (408)
                      |+.  ..|.+++++ .+|+
T Consensus       105 ~v~--~~Pt~~lid~~~G~  121 (146)
T 1o8x_A          105 NVE--SIPTLIGVDADSGD  121 (146)
T ss_dssp             TCC--SSSEEEEEETTTCC
T ss_pred             CCC--CCCEEEEEECCCCe
Confidence            884  368888888 5444

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=91.53  E-value=0.23  Score=41.01  Aligned_cols=95  Identities=13%  Similarity=0.144  Sum_probs=47.2

Q ss_pred             cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHh------HhCC-Cccc----ccChhHHHHHh--ccCCe
Q 015368          116 EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE------KMTL-GTYS----ITTTDEAERIL--TVESK  182 (408)
Q Consensus       116 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~------~~~~-~~~~----i~~~~~~~~~~--~~~~~  182 (408)
                      +...++.+||+|+|++++  +|+......+ .+.+.+.+|+++      .+.. ++..    +..-.+...+.  ...++
T Consensus        39 ~~~~a~~~gi~gvP~fvi--ngk~~~~~~~-~~~~~~~~f~~~~~~l~~~L~s~~~p~~~~~~~~g~~y~~l~~p~~~~~  115 (197)
T 1un2_A           39 QEKAAADVQLRGVPAMFV--NGKYQLNPQG-MDTSNMDVFVQQYADTVKYLSEKKGGGTGAQYEDGKQYTTLEKPVAGAP  115 (197)
T ss_dssp             HHHHHHHTTCCSSSEEEE--TTTEEECGGG-SCCSSHHHHHHHHHHHHHHHTC---------CCBTTTEEECSSCCTTCC
T ss_pred             HHHHHHHcCCCcCCEEEE--cceEecCccc-cccccHHHHHHHHHHHHHHHHhCcccccccccCCCCCceEccCCCCCCC
Confidence            345688999999999865  7754332222 222223222222      2211 1100    00000111111  12457


Q ss_pred             EEEEEecCCCCcCHHHH------HHHh-ccCCceeEEE
Q 015368          183 LVLGFLHDLEGMESEEL------AAAS-KLHSDVNFYQ  213 (408)
Q Consensus       183 ~vi~f~~~~~~~~~~~~------~~~a-~~~~~~~f~~  213 (408)
                      .+|-||..||.+++..-      ..++ .+.+++.|..
T Consensus       116 ~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~  153 (197)
T 1un2_A          116 QVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTK  153 (197)
T ss_dssp             SEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEE
T ss_pred             EEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEE
Confidence            88899999999976654      3434 4445566554

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=91.51  E-value=0.73  Score=36.50  Aligned_cols=72  Identities=7%  Similarity=0.039  Sum_probs=50.2

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCccc---------------------ccchhhhccC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGV---------------------GRRVSQEFGV  339 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~---------------------~~~l~~~~~i  339 (408)
                      ++++++ ++..+|. |......+.++++++++. +++.++.++.+...-                     ...+.+.|++
T Consensus        48 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           48 GKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDS-KNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCEEEEEEECCcChhHHHHHHHHHHHHHHhccC-CCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            445555 5556676 899999999999999851 128888888765420                     0467788888


Q ss_pred             CCCCCcEEEEEccC-Cccc
Q 015368          340 SGNAPRVIAYSARD-AKKY  357 (408)
Q Consensus       340 ~~~~~p~i~i~~~~-~~~y  357 (408)
                      .  ..|.+++++.+ |+..
T Consensus       127 ~--~~Pt~~lid~~~G~iv  143 (165)
T 3s9f_A          127 E--SIPTLIGLNADTGDTV  143 (165)
T ss_dssp             C--SSSEEEEEETTTCCEE
T ss_pred             C--CCCEEEEEeCCCCEEE
Confidence            4  46888888864 5443

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=90.96  E-value=1.2  Score=35.98  Aligned_cols=94  Identities=14%  Similarity=0.030  Sum_probs=58.1

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC---------cccccchhh-hccCC----------
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS---------EGVGRRVSQ-EFGVS----------  340 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~---------~~~~~~l~~-~~~i~----------  340 (408)
                      ++++++ ++..||. |......+.+++.+++++  ++.++.+.++.         .. ...+++ .++++          
T Consensus        46 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~~~vi~is~d~~~~~e~~~~~~-~~~~~~~~~~~~~p~~~~~d~~  122 (187)
T 3dwv_A           46 GSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ--GFTVLAFPSNQFGGQEPGNEEE-IKEFVCTKFKAEFPIMAKINVN  122 (187)
T ss_dssp             TSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGG--TCEEEEEEBCCCSSCSSSBTTH-HHHSCCBCCCCSSCBBCCBCCS
T ss_pred             CCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhC--CeEEEEEECcccCCCCCCCHHH-HHHHHHhccCCCCceeeccccC
Confidence            344444 5667776 899999999999999864  27777776541         11 111111 22211          


Q ss_pred             -------------------C-CCCc---EEEEEccCCc-cccCCCCCChHHHHHHHHHHhcCc
Q 015368          341 -------------------G-NAPR---VIAYSARDAK-KYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       341 -------------------~-~~~p---~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                                         . ...|   ..++++.+|+ .+.+.|..+.++|.+.|+.+++|.
T Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i~~lL~~~  185 (187)
T 3dwv_A          123 GENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLGSA  185 (187)
T ss_dssp             CC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHC---
T ss_pred             CcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHHHHHHhcC
Confidence                               0 1234   6777777444 455778889999999999998763

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=90.80  E-value=0.95  Score=35.64  Aligned_cols=95  Identities=19%  Similarity=0.082  Sum_probs=59.8

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--------ccccch-hhhc--------------
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--------GVGRRV-SQEF--------------  337 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--------~~~~~l-~~~~--------------  337 (408)
                      +.++++ ++..+|. |......+++++.+++++  ++.++.++++..        +-...+ .+.+              
T Consensus        31 gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  108 (169)
T 2v1m_A           31 GHVCLIVNVACKCGATDKNYRQLQEMHTRLVGK--GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNG  108 (169)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSEEBCCCCCSS
T ss_pred             CCEEEEEEeeccCCchHHHHHHHHHHHHHhhcC--CeEEEEEECCccCCCCCCCHHHHHHHHHHhcCCCCceEEEEeecC
Confidence            445444 4556776 888999999999999863  288888886420        001112 1222              


Q ss_pred             ---------------cCCC---CCCcEEEEEccCC-ccccCCCCCChHHHHHHHHHHhcCc
Q 015368          338 ---------------GVSG---NAPRVIAYSARDA-KKYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       338 ---------------~i~~---~~~p~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                                     |+..   ...|..++++.+| ..+.+.|..+.+++.+.|+.++++|
T Consensus       109 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~k  169 (169)
T 2v1m_A          109 SDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELLEKK  169 (169)
T ss_dssp             TTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHHHCC
T ss_pred             ccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHHHHHhccC
Confidence                           2111   1125677777644 4555778888899999999988764

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=90.68  E-value=1.5  Score=34.55  Aligned_cols=92  Identities=12%  Similarity=0.057  Sum_probs=61.4

Q ss_pred             CccEEE-EEeeCCC--chHHHHHHHHHHHHhc-----CCcceEEEEEEEcCCcc-------------------------c
Q 015368          283 PRKQLW-LFAPAYG--SDKVILTFEEVAKALK-----GKVNMLLHVYVEMNSEG-------------------------V  329 (408)
Q Consensus       283 ~~~~~i-~f~~~~~--~~~~~~~~~~vA~~~~-----~~~~~i~f~~vd~~~~~-------------------------~  329 (408)
                      +.++++ ++..+|.  |......+++++.++.     .+   +.++.++.+...                         -
T Consensus        26 gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~---v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~  102 (171)
T 2rli_A           26 GQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPP---VQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQ  102 (171)
T ss_dssp             TSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCC---EEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHH
T ss_pred             CCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCc---eEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHH
Confidence            345444 4556765  8899999999999995     35   898888876310                         0


Q ss_pred             ccchhhhccCCCC-------------CCcEEEEEccCC-ccccCCCCCChHHHHHHHHHHhc
Q 015368          330 GRRVSQEFGVSGN-------------APRVIAYSARDA-KKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       330 ~~~l~~~~~i~~~-------------~~p~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      ...+.+.||+...             ..|.+++++.+| ..+.+.|..+.++|.+.|+.++.
T Consensus       103 ~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~  164 (171)
T 2rli_A          103 VAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA  164 (171)
T ss_dssp             HHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            1145667777421             123777777744 44556778889999999988765

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=90.32  E-value=1.5  Score=32.73  Aligned_cols=43  Identities=16%  Similarity=0.059  Sum_probs=29.7

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH-------hHHHHcCC
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK-------DLAKEYNI  125 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~-------~~~~~~~i  125 (408)
                      +..|+.++|+.|++....+++.      ++.+-.+|+.+++       ++.+++|+
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~~------gi~y~~~di~~~~~~~~~l~~~~~~~g~   56 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLEDH------GIDYTFHDYKKEGLDAETLDRFLKTVPW   56 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCEEEEEHHHHCCCHHHHHHHHHHSCG
T ss_pred             EEEEECCCChHHHHHHHHHHHc------CCcEEEEeeeCCCCCHHHHHHHHHHcCh
Confidence            5667899999999988777662      4666677775432       34556663

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=90.23  E-value=0.37  Score=47.29  Aligned_cols=67  Identities=19%  Similarity=0.242  Sum_probs=44.1

Q ss_pred             hhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc---H----hHHHHcCCCcCcEEEEEeC
Q 015368           64 KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE---K----DLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        64 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~---~----~~~~~~~i~~~Pt~~~~~~  136 (408)
                      +.+++.+..++  ++.|..+||++|++....+++.      ++.+-.+|++..   +    .+.+..+...+|.+  |-+
T Consensus         9 ~~v~~~i~~~~--v~vy~~~~Cp~C~~~k~~L~~~------~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v--~i~   78 (598)
T 2x8g_A            9 QWLRKTVDSAA--VILFSKTTCPYCKKVKDVLAEA------KIKHATIELDQLSNGSAIQKCLASFSKIETVPQM--FVR   78 (598)
T ss_dssp             HHHHHHHHHCS--EEEEECTTCHHHHHHHHHHHHT------TCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEE--EET
T ss_pred             HHHHHHhccCC--EEEEECCCChhHHHHHHHHHHC------CCCcEEEEcccCcchHHHHHHHHHHhCCceeCEE--EEC
Confidence            45666665543  5668999999999988887753      344555666542   2    23445688899987  447


Q ss_pred             CeEe
Q 015368          137 GVRQ  140 (408)
Q Consensus       137 g~~~  140 (408)
                      |+.+
T Consensus        79 g~~i   82 (598)
T 2x8g_A           79 GKFI   82 (598)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            7543

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=90.15  E-value=0.23  Score=36.70  Aligned_cols=84  Identities=8%  Similarity=0.086  Sum_probs=50.2

Q ss_pred             HHHHHhccCCeEEEEEecCCCCcCHHHHHHHhccCCceeEEEec-C-------HhHHhhcCCCCCCCCCeEEEeecCCCc
Q 015368          172 EAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTT-S-------ADVAEFFHIHPKSKRPALIFLHLEAGK  243 (408)
Q Consensus       172 ~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~-~-------~~l~~~~~i~~~~~~p~l~~~~~~~~~  243 (408)
                      .++..+... .+++ |+.+||.++......+.++...+.+..+. +       ..+.+.+++.   +.|++  |..+ ..
T Consensus        12 ~~~~~~~~~-~vv~-f~a~~C~~C~~~~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~---~~Pt~--~~~g-~~   83 (116)
T 2e7p_A           12 KAKELASSA-PVVV-FSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRG---TVPNV--FIGG-KQ   83 (116)
T ss_dssp             HHHHHHTSS-SEEE-EECTTCHHHHHHHHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCC---SSCEE--EETT-EE
T ss_pred             HHHHHHcCC-CEEE-EECCCChhHHHHHHHHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCC---CcCEE--EECC-EE
Confidence            344444443 4444 99999999776665555544455555542 2       3488899997   58998  3332 12


Q ss_pred             ccccCCcC---CHHHHHHHHhcC
Q 015368          244 ATPFRHQF---TRLAIANFVTHT  263 (408)
Q Consensus       244 ~~~y~g~~---~~~~i~~fi~~~  263 (408)
                      ...+.|..   +.+.|.+|+...
T Consensus        84 v~~~~~~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           84 IGGCDTVVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             EECHHHHHHHHHTTCHHHHHHHT
T ss_pred             ECChHHHHHHHhCChHHHHHHHc
Confidence            22333332   456788888764

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=90.08  E-value=1.8  Score=35.52  Aligned_cols=36  Identities=17%  Similarity=0.323  Sum_probs=29.5

Q ss_pred             HHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          120 AKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       120 ~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++++||.|+|++++  +|+   .+.|....+.+.+.|.+..
T Consensus       160 a~~~Gv~G~Ptfvi--~g~---~~~G~~~~~~l~~~l~~~~  195 (203)
T 2imf_A          160 AIERKVFGVPTMFL--GDE---MWWGNDRLFMLESAMGRLC  195 (203)
T ss_dssp             HHHTTCCSSSEEEE--TTE---EEESGGGHHHHHHHHHHHH
T ss_pred             HHHCCCCcCCEEEE--CCE---EEECCCCHHHHHHHHhccc
Confidence            46689999999877  784   5789999999998887654

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=89.97  E-value=1.9  Score=33.88  Aligned_cols=94  Identities=13%  Similarity=0.034  Sum_probs=59.4

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC--------cccccchhh-hccCC-----------
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS--------EGVGRRVSQ-EFGVS-----------  340 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~--------~~~~~~l~~-~~~i~-----------  340 (408)
                      ++++++ ++..+|. |......+.+++.+++++  ++.++.++++.        .+-...+++ .++++           
T Consensus        32 gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  109 (170)
T 2p5q_A           32 GKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQ--GLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNG  109 (170)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBSSS
T ss_pred             CCEEEEEEEeccCCccHHHHHHHHHHHHHhccC--CEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeeccCC
Confidence            445444 4556676 889999999999999853  28888887642        100112222 22210           


Q ss_pred             ------------------CCCCc---EEEEEccCC-ccccCCCCCChHHHHHHHHHHhcC
Q 015368          341 ------------------GNAPR---VIAYSARDA-KKYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       341 ------------------~~~~p---~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                                        ....|   ..++++.+| ..+.+.|..+.+++.+.|+.+++.
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  169 (170)
T 2p5q_A          110 ENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEI  169 (170)
T ss_dssp             TTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHHHTTC
T ss_pred             CchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHHHHHHHHhhc
Confidence                              02245   677777644 445567888889999999988753

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=89.78  E-value=2  Score=33.92  Aligned_cols=90  Identities=17%  Similarity=0.052  Sum_probs=55.7

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcC--------Ccccccchh-h----------------
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMN--------SEGVGRRVS-Q----------------  335 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~--------~~~~~~~l~-~----------------  335 (408)
                      ++++++ ++..+|. |. ....+.+++.+++++  ++.++.++++        ..+-...++ +                
T Consensus        32 Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~  108 (171)
T 3cmi_A           32 GKVVLIVNVASKCGFTP-QYKELEALYKRYKDE--GFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNG  108 (171)
T ss_dssp             TCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGG--TEEEEEEEECSCC------------------CCCSCBBCCCBSSS
T ss_pred             CCEEEEEEEecCCCcch-hHHHHHHHHHHhccC--CeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCC
Confidence            445444 5556776 88 889999999999863  2888888653        110011222 1                


Q ss_pred             -------------hccCCCCCCc------EEEEEccCC-ccccCCCCCChHHHHHHHHHHhc
Q 015368          336 -------------EFGVSGNAPR------VIAYSARDA-KKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       336 -------------~~~i~~~~~p------~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                                   .+|+.  ..|      ..++++.+| ..+.+.|..+.+.+.+.|+.+++
T Consensus       109 ~~~~~~~~~~~~~~~~v~--~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~  168 (171)
T 3cmi_A          109 GNEDPVYKFLKSQKSGML--GLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELLK  168 (171)
T ss_dssp             TTBCHHHHHHHHHSCCSS--SCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred             ccchHHHHHHHhccCCcC--CCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence                         13332  246      677777644 45556788889999999998875

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=89.65  E-value=1.7  Score=33.70  Aligned_cols=89  Identities=9%  Similarity=0.038  Sum_probs=56.4

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc-c----------------cc---chhhhccCC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG-V----------------GR---RVSQEFGVS  340 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~-~----------------~~---~l~~~~~i~  340 (408)
                      ++++++ ++..+|. |......+.+++++++++  ++.++.++.+... .                ..   .+.+.||+.
T Consensus        35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  112 (152)
T 2lrt_A           35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQ--GFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVT  112 (152)
T ss_dssp             GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCC
T ss_pred             CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccC--CeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcc
Confidence            345555 4455665 888999999999999863  2889888876542 0                00   166778884


Q ss_pred             CCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHHhcC
Q 015368          341 GNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       341 ~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                        ..|.+++++.+|+ .+.+.|..+   +.+.+...++|
T Consensus       113 --~~P~~~lid~~G~i~~~~~g~~~---~e~~~~~~~~~  146 (152)
T 2lrt_A          113 --NLPSVFLVNRNNELSARGENIKD---LDEAIKKLLEG  146 (152)
T ss_dssp             --SCSEEEEEETTTEEEEETTTCSC---HHHHHHHHHGG
T ss_pred             --cCceEEEECCCCeEEEecCCHHH---HHHHHHHHHhc
Confidence              3688888887444 445566444   44444444444

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=89.63  E-value=0.92  Score=34.61  Aligned_cols=68  Identities=9%  Similarity=0.073  Sum_probs=47.6

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhc--CCcceEEEEEEEcCCcc---------------------cccchhhhc
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALK--GKVNMLLHVYVEMNSEG---------------------VGRRVSQEF  337 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~--~~~~~i~f~~vd~~~~~---------------------~~~~l~~~~  337 (408)
                      +.++++ ++..+|. |......+.+++++++  +.   +.++.++.+...                     -...+.+.|
T Consensus        28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~---~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (144)
T 1o73_A           28 GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN---FEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTF  104 (144)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT---EEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCC---EEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHc
Confidence            345544 4555665 8899999999999998  45   889988877531                     023567788


Q ss_pred             cCCCCCCcEEEEEc-cCCc
Q 015368          338 GVSGNAPRVIAYSA-RDAK  355 (408)
Q Consensus       338 ~i~~~~~p~i~i~~-~~~~  355 (408)
                      |+.  ..|.+++++ .+|+
T Consensus       105 ~v~--~~Pt~~lid~~~G~  121 (144)
T 1o73_A          105 GVE--SIPTLITINADTGA  121 (144)
T ss_dssp             TCC--SSSEEEEEETTTCC
T ss_pred             CCC--CCCEEEEEECCCCe
Confidence            884  368888888 5444

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=88.95  E-value=1.8  Score=32.85  Aligned_cols=84  Identities=11%  Similarity=0.112  Sum_probs=54.4

Q ss_pred             ccEEE-EEeeCCC-chHHHHHHHH---HHHHhcCCcceEEEEEEEcCCcc--cc-------------------cchhhhc
Q 015368          284 RKQLW-LFAPAYG-SDKVILTFEE---VAKALKGKVNMLLHVYVEMNSEG--VG-------------------RRVSQEF  337 (408)
Q Consensus       284 ~~~~i-~f~~~~~-~~~~~~~~~~---vA~~~~~~~~~i~f~~vd~~~~~--~~-------------------~~l~~~~  337 (408)
                      .++++ ++..+|. |......+.+   +..+++++  ++.++.++.+...  +.                   ..+.+.|
T Consensus        32 k~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  109 (142)
T 3eur_A           32 EYTLLFINNPGCHACAEMIEGLKASPVINGFTAAK--KLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY  109 (142)
T ss_dssp             SEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTT--SEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred             CEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccC--CeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence            45555 4455666 8899999999   99999753  2888888876541  00                   0134566


Q ss_pred             cCCCCCCcEEEEEccCCccccCCCCCChHHHHHHHH
Q 015368          338 GVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGE  373 (408)
Q Consensus       338 ~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~  373 (408)
                      ++.  ..|.+++++.+|+... . ..+.++|.+|++
T Consensus       110 ~v~--~~P~~~lid~~G~i~~-~-~~~~~~l~~~l~  141 (142)
T 3eur_A          110 DLR--AIPTLYLLDKNKTVLL-K-DATLQKVEQYLA  141 (142)
T ss_dssp             CCT--TCSEEEEECTTCBEEE-E-EECHHHHHHHHH
T ss_pred             CCC--cCCeEEEECCCCcEEe-c-CCCHHHHHHHHh
Confidence            663  4688888887554322 1 135788888886

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=88.70  E-value=2.4  Score=30.23  Aligned_cols=76  Identities=7%  Similarity=0.015  Sum_probs=51.0

Q ss_pred             CCeEEEEEecCCCCcCHHHHHHHhccCCceeEEEe-----cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHH
Q 015368          180 ESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQT-----TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRL  254 (408)
Q Consensus       180 ~~~~vi~f~~~~~~~~~~~~~~~a~~~~~~~f~~~-----~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~  254 (408)
                      ....++.|+.+||.++...-..+.++...+.|..+     .+.+++++++ .   +.|+++  ..+  ... ..+.++.+
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~~i~~~~vdi~~~~~~el~~~~g-~---~vP~l~--~~g--~~~-~~~g~~~~   85 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYK-F---DIPVFH--LNG--QFL-MMHRVNTS   85 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSS-S---SCSEEE--ESS--SEE-EESSCCHH
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhhhCCeEEEEECCCcchHHHHHHHC-C---CCCEEE--ECC--EEE-EecCCCHH
Confidence            34567779999999877666555555555776543     3467888999 6   589763  332  222 23457889


Q ss_pred             HHHHHHhcCC
Q 015368          255 AIANFVTHTK  264 (408)
Q Consensus       255 ~i~~fi~~~~  264 (408)
                      .|.+||....
T Consensus        86 ~l~~~l~~~~   95 (100)
T 1wjk_A           86 KLEKQLRKLS   95 (100)
T ss_dssp             HHHHHHHSSS
T ss_pred             HHHHHHHHHH
Confidence            9999997643

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=88.59  E-value=1.5  Score=35.63  Aligned_cols=96  Identities=18%  Similarity=0.187  Sum_probs=63.1

Q ss_pred             CccEEEEEe--eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc----------------------cccchhhhc
Q 015368          283 PRKQLWLFA--PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG----------------------VGRRVSQEF  337 (408)
Q Consensus       283 ~~~~~i~f~--~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~----------------------~~~~l~~~~  337 (408)
                      ++++++.|.  .+|. |......+.+++.++..+  ++.++.++.+..+                      -...+.+.|
T Consensus        45 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  122 (195)
T 2bmx_A           45 GKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDR--DAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  122 (195)
T ss_dssp             TCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             CCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHh
Confidence            346666554  5666 899999999999999853  2888888876410                      023455677


Q ss_pred             cCCCC---CCcEEEEEccCCc-cccCCCC----CChHHHHHHHHHHhcCcc
Q 015368          338 GVSGN---APRVIAYSARDAK-KYVLNGE----LTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       338 ~i~~~---~~p~i~i~~~~~~-~y~~~~~----~~~~~i~~Fi~~~~~gk~  380 (408)
                      |+...   ..|.+++++.+|+ .+.+.|.    .+.+++.+.|+.+..|..
T Consensus       123 ~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~~~  173 (195)
T 2bmx_A          123 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQSDEL  173 (195)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHHC---
T ss_pred             CCcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHHhhCCC
Confidence            77411   3688888887443 3333332    378999999999998755

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=87.74  E-value=2.2  Score=33.61  Aligned_cols=97  Identities=12%  Similarity=0.015  Sum_probs=57.3

Q ss_pred             CccEEE-EEeeCCC--chHHHHHHHHHHHHhcCCcceEEEEEEEcCC---c-ccccchhhhccCC---------------
Q 015368          283 PRKQLW-LFAPAYG--SDKVILTFEEVAKALKGKVNMLLHVYVEMNS---E-GVGRRVSQEFGVS---------------  340 (408)
Q Consensus       283 ~~~~~i-~f~~~~~--~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~---~-~~~~~l~~~~~i~---------------  340 (408)
                      +.++++ ++..+|.  |......+.++..++..+..++.++.++.+.   . +-...+++.++++               
T Consensus        33 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~  112 (174)
T 1xzo_A           33 GEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEI  112 (174)
T ss_dssp             TCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHH
T ss_pred             CCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHHH
Confidence            344444 5666774  8888889999988887431237888887652   1 0011122222211               


Q ss_pred             --------------------CCCCcEEEEEccCCc-cccCCCCC--ChHHHHHHHHHHhcCc
Q 015368          341 --------------------GNAPRVIAYSARDAK-KYVLNGEL--TLSSIKSFGEEFLEDK  379 (408)
Q Consensus       341 --------------------~~~~p~i~i~~~~~~-~y~~~~~~--~~~~i~~Fi~~~~~gk  379 (408)
                                          ....|..++++.+|+ .+.+.|..  +.++|.+.|+.+++.|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~ll~~k  174 (174)
T 1xzo_A          113 EEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSASTLK  174 (174)
T ss_dssp             HHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHHTCCC
T ss_pred             HHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHHHhcC
Confidence                                123577777777444 33445533  5789999999988764

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=87.43  E-value=2.1  Score=34.60  Aligned_cols=92  Identities=15%  Similarity=0.077  Sum_probs=58.8

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC--------cccccchh-hhc--------------
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS--------EGVGRRVS-QEF--------------  337 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~--------~~~~~~l~-~~~--------------  337 (408)
                      +.++++ ++..+|. |......+.+++++++++  ++.++.++++.        .+-...++ +.+              
T Consensus        48 Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~  125 (190)
T 2vup_A           48 GSPLLIYNVASKCGYTKGGYETATTLYNKYKSQ--GFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNG  125 (190)
T ss_dssp             TSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSS
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHHHHhcC--CeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCc
Confidence            345444 4556676 888999999999999853  28888887652        10011222 121              


Q ss_pred             ---------------cCCCCCCc------EEEEEccCCc-cccCCCCCChHHHHHHHHHHhcC
Q 015368          338 ---------------GVSGNAPR------VIAYSARDAK-KYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       338 ---------------~i~~~~~p------~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                                     |+.  ..|      ..++++.+|+ .+.+.|..+.+.+.+.|+.+++.
T Consensus       126 ~~~~~~~~~l~~~~~~v~--~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~  186 (190)
T 2vup_A          126 ENAHPLYEYMKKTKPGIL--KTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLES  186 (190)
T ss_dssp             TTBCHHHHHHHHHSCCGG--GCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred             ccccHHHHHHHhhcCCcC--CCccccccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence                           321  134      6777776444 55567888899999999988764

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=87.25  E-value=2.8  Score=33.67  Aligned_cols=93  Identities=12%  Similarity=-0.022  Sum_probs=62.0

Q ss_pred             CccEEEEEe--eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc--------c--------------ccchhhhc
Q 015368          283 PRKQLWLFA--PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG--------V--------------GRRVSQEF  337 (408)
Q Consensus       283 ~~~~~i~f~--~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~--------~--------------~~~l~~~~  337 (408)
                      +.++++.|.  .+|. |......+.+++.+++.+  ++.++.++.+...        +              ...+.+.|
T Consensus        31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  108 (187)
T 1we0_A           31 GKWSIVVFYPADFSFVCPTELEDVQKEYAELKKL--GVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQF  108 (187)
T ss_dssp             SSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHT--TEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHT
T ss_pred             CCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHh
Confidence            346666554  5665 889999999999999752  1888888876410        0              23456777


Q ss_pred             cCCCC----CCcEEEEEccCCc-cccCCCC----CChHHHHHHHHHHhc
Q 015368          338 GVSGN----APRVIAYSARDAK-KYVLNGE----LTLSSIKSFGEEFLE  377 (408)
Q Consensus       338 ~i~~~----~~p~i~i~~~~~~-~y~~~~~----~~~~~i~~Fi~~~~~  377 (408)
                      |+...    ..|.+++++.+|+ .+.+.|.    .+.++|.+.|+.+..
T Consensus       109 ~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          109 DVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAAQY  157 (187)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHHHH
T ss_pred             CCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            87511    4688888887444 3333332    367889999988775

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=86.76  E-value=1.2  Score=35.74  Aligned_cols=41  Identities=10%  Similarity=-0.059  Sum_probs=30.2

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMN  325 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~  325 (408)
                      ++++++ ++..+|. |......+.+++.++.++  ++.++.++++
T Consensus        47 gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~vs~d   89 (183)
T 2obi_A           47 GFVCIVTNVASQCGKTEVNYTQLVDLHARYAEC--GLRILAFPCN   89 (183)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECC
T ss_pred             CCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcC--CeEEEEEECC
Confidence            344444 5556776 888999999999999853  2888888764

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=86.51  E-value=3.8  Score=32.65  Aligned_cols=94  Identities=12%  Similarity=0.080  Sum_probs=57.1

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC--------cccccchhhh-ccCCC----------
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS--------EGVGRRVSQE-FGVSG----------  341 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~--------~~~~~~l~~~-~~i~~----------  341 (408)
                      +.++++ ++..||. |......+.+++++++++  ++.++-+.++.        .+-...+++. +|++-          
T Consensus        38 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~  115 (180)
T 3kij_A           38 GKVSLVVNVASDCQLTDRNYLGLKELHKEFGPS--HFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILG  115 (180)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTT--SEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCEEEEEEEecCCCCcHHHHHHHHHHHHHhccC--CeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccC
Confidence            444444 4556776 999999999999999874  28888886542        1112233344 44321          


Q ss_pred             --C------------CCcE----EEEEccCCc-cccCCCCCChHHHHHHHHHHhcC
Q 015368          342 --N------------APRV----IAYSARDAK-KYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       342 --~------------~~p~----i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                        .            ..|.    .++++.+|+ .+.+.|..+.+.+.+.|+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~  171 (180)
T 3kij_A          116 SEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQ  171 (180)
T ss_dssp             TTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHHHHHHH
T ss_pred             ccccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence              0            1233    566666444 45567777777777777776654

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=86.06  E-value=5.4  Score=31.00  Aligned_cols=90  Identities=12%  Similarity=0.147  Sum_probs=56.3

Q ss_pred             EEEEEe--eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc------------------cccchhhhccCCC--C
Q 015368          286 QLWLFA--PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG------------------VGRRVSQEFGVSG--N  342 (408)
Q Consensus       286 ~~i~f~--~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~------------------~~~~l~~~~~i~~--~  342 (408)
                      +++.|.  .+|. |......+.+++.+++++  ++.++.++.+..+                  -...+.+.||+..  .
T Consensus        32 vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~  109 (161)
T 3drn_A           32 IVLYFYPKDDTPGSTREASAFRDNWDLLKDY--DVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGFIL  109 (161)
T ss_dssp             EEEEECSCTTCHHHHHHHHHHHHTHHHHHTT--CEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCSSS
T ss_pred             EEEEEEcCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCcCc
Confidence            666664  5565 888999999999999864  2888888765210                  1346677788853  1


Q ss_pred             CCcEEEEEccCCc-cccCCCC----CChHHHHHHHHHHhc
Q 015368          343 APRVIAYSARDAK-KYVLNGE----LTLSSIKSFGEEFLE  377 (408)
Q Consensus       343 ~~p~i~i~~~~~~-~y~~~~~----~~~~~i~~Fi~~~~~  377 (408)
                      ..|..++++.+|+ .+.+.|.    -+.+++.+.++.+..
T Consensus       110 ~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l~~  149 (161)
T 3drn_A          110 PARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQIKE  149 (161)
T ss_dssp             CCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHHHH
T ss_pred             ccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHhhh
Confidence            2688888887554 3444442    223445555555433

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=85.37  E-value=4.4  Score=32.36  Aligned_cols=92  Identities=12%  Similarity=0.116  Sum_probs=56.5

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC--------cccccchhhh-ccCC----------C
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS--------EGVGRRVSQE-FGVS----------G  341 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~--------~~~~~~l~~~-~~i~----------~  341 (408)
                      +.++++ ++..+|. |......+++++.+++++  ++.++.++++.        .+-...+++. ++++          .
T Consensus        49 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~--~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g  126 (181)
T 2p31_A           49 GSVSLVVNVASECGFTDQHYRALQQLQRDLGPH--HFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTG  126 (181)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSS
T ss_pred             CCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcC--CEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCC
Confidence            344444 5556776 888999999999999853  28888887642        1101122232 3221          0


Q ss_pred             -----------CCCc-------EEEEEccCC-ccccCCCCCChHHHHHHHHHHh
Q 015368          342 -----------NAPR-------VIAYSARDA-KKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       342 -----------~~~p-------~i~i~~~~~-~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                                 ...|       ..++++.+| ..+.+.|..+.++|.+.|+.++
T Consensus       127 ~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll  180 (181)
T 2p31_A          127 TGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV  180 (181)
T ss_dssp             TTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHHHTTC
T ss_pred             ccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHHHHHh
Confidence                       0125       566666644 3455677788889988888765

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=85.28  E-value=0.17  Score=39.74  Aligned_cols=87  Identities=10%  Similarity=0.033  Sum_probs=48.1

Q ss_pred             EEeeCCC-chHHHHHHHH-HHHHhc--CCcceEEEEEEEcCCc-ccccchh------------------hhccCCCCCCc
Q 015368          289 LFAPAYG-SDKVILTFEE-VAKALK--GKVNMLLHVYVEMNSE-GVGRRVS------------------QEFGVSGNAPR  345 (408)
Q Consensus       289 ~f~~~~~-~~~~~~~~~~-vA~~~~--~~~~~i~f~~vd~~~~-~~~~~l~------------------~~~~i~~~~~p  345 (408)
                      ++..+|. |......+.+ ++.++.  ..   +.++.++.++. +-...+.                  +.||+.....|
T Consensus        40 f~a~~C~~C~~~~~~l~~~l~~~~~~~~~---~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~P  116 (159)
T 2ls5_A           40 FTASWCGVCRKEMPFIEKDIWLKHKDNAD---FALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADIFAKYALRDAGIT  116 (159)
Confidence            3445555 6666667776 666665  23   66666665433 1111222                  33333223367


Q ss_pred             EEEEEccCCc-cccCCCCCChHHHHHHHHHHhcCc
Q 015368          346 VIAYSARDAK-KYVLNGELTLSSIKSFGEEFLEDK  379 (408)
Q Consensus       346 ~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~~~gk  379 (408)
                      .+++++.+|+ .+.+.| .+.+++.++++.+.++.
T Consensus       117 ~~~lid~~G~i~~~~~g-~~~~~l~~~l~~l~~~~  150 (159)
T 2ls5_A          117 RNVLIDREGKIVKLTRL-YNEEEFASLVQQINEML  150 (159)
Confidence            7777776443 334444 56677888888776653

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=84.96  E-value=0.94  Score=34.45  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=26.1

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE  116 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~  116 (408)
                      +..|+.++|+.|++....+++.      ++.+-.+|++++
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~~------gi~y~~~di~~~   36 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEEH------EIPFVERNIFSE   36 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc------CCceEEEEccCC
Confidence            5678899999999988777652      566777777654

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=84.72  E-value=0.7  Score=37.44  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=29.9

Q ss_pred             hHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368          118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       118 ~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i  156 (408)
                      ..++++||+|+||+++  ||+......|..+.+++.++|
T Consensus       145 ~~a~~~GV~gtPtf~i--ng~~~~~~s~~~~~e~w~~~l  181 (182)
T 3gn3_A          145 KYARQNGIHVSPTFMI--NGLVQPGMSSGDPVSKWVSDI  181 (182)
T ss_dssp             HHHHHHTCCSSSEEEE--TTEECTTCCTTSCHHHHHHHH
T ss_pred             HHHHHCCCCccCEEEE--CCEEccCCCCCCCHHHHHHHh
Confidence            4577899999999977  886555578889999988876

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=83.82  E-value=2.1  Score=31.14  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=29.8

Q ss_pred             CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc
Q 015368           74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY  114 (408)
Q Consensus        74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~  114 (408)
                      |.++++|-.|.|+.|......+    +.+.++..+.+||+-
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l----~~ledeY~ilrVNIl   38 (124)
T 2g2q_A            2 KNVLIIFGKPYCSICENVSDAV----EELKSEYDILHVDIL   38 (124)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHH----HTTTTTEEEEEEECC
T ss_pred             CceEEEeCCCccHHHHHHHHHH----HHhhccccEEEEEee
Confidence            5689999999999999887776    445556778899863

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=83.24  E-value=3.6  Score=29.87  Aligned_cols=50  Identities=12%  Similarity=0.125  Sum_probs=38.4

Q ss_pred             CcEEEEEeCcccH----------hHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHH
Q 015368          105 EADLVMVDAYLEK----------DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       105 ~v~~~~v~~~~~~----------~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~  157 (408)
                      ++.+.+.|...++          ++.+++|+...|.+++  ||+++ ..-...+.+++.+|+.
T Consensus        40 Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G~~~LP~~~V--DGevv-~~G~yPt~eEl~~~lg   99 (110)
T 3kgk_A           40 GVQIERFNLAQQPMSFVQNEKVKAFIEASGAEGLPLLLL--DGETV-MAGRYPKRAELARWFG   99 (110)
T ss_dssp             TCCEEEEETTTCTTHHHHSHHHHHHHHHHCGGGCCEEEE--TTEEE-EESSCCCHHHHHHHHT
T ss_pred             CCeEEEEccccChHHHhcCHHHHHHHHHcCcccCCEEEE--CCEEE-EeccCCCHHHHHHHhC
Confidence            7999999998876          4667899999998755  88443 3333468899999985

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=82.92  E-value=2.4  Score=32.23  Aligned_cols=86  Identities=7%  Similarity=0.051  Sum_probs=54.9

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc-------------c----------ccchhhhc
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG-------------V----------GRRVSQEF  337 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~-------------~----------~~~l~~~~  337 (408)
                      ++++++ ++..+|. |......+.+++++++++  ++.++.++.+...             |          ...+.+.|
T Consensus        32 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~--~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  109 (143)
T 4fo5_A           32 GRYTLLNFWAAYDAESRARNVQLANEVNKFGPD--KIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKY  109 (143)
T ss_dssp             CCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTT--TEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHT
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcC--CEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHc
Confidence            345544 4555665 889999999999999753  2888888776421             0          12355667


Q ss_pred             cCCCCCCcEEEEEccCCccccCCCCCChHHHHHHHHH
Q 015368          338 GVSGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEE  374 (408)
Q Consensus       338 ~i~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~  374 (408)
                      |+..  .|..++++.+|+...-  ..+.+++.+++++
T Consensus       110 ~v~~--~P~~~lid~~G~i~~~--~~~~~~l~~~l~~  142 (143)
T 4fo5_A          110 DLRK--GFKNFLINDEGVIIAA--NVTPEKLTEILKA  142 (143)
T ss_dssp             TGGG--CCCEEEECTTSBEEEE--SCCHHHHHHHHTC
T ss_pred             CCCC--CCcEEEECCCCEEEEc--cCCHHHHHHHHHh
Confidence            7743  5777888765543321  2357778877754

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=82.53  E-value=4.5  Score=32.41  Aligned_cols=41  Identities=10%  Similarity=-0.087  Sum_probs=30.0

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcC
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMN  325 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~  325 (408)
                      +.++++ ++..+|. |......+++++.+++++  ++.++.++++
T Consensus        49 Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~--~v~vv~is~d   91 (185)
T 2gs3_A           49 GFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC--GLRILAFPCN   91 (185)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGG--TEEEEEEECC
T ss_pred             CCEEEEEEecCCCCchHHHHHHHHHHHHHhhcC--CeEEEEEECc
Confidence            344444 5556776 888899999999999853  2888888764

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=81.67  E-value=2.1  Score=33.64  Aligned_cols=82  Identities=12%  Similarity=0.048  Sum_probs=51.4

Q ss_pred             CCeEEEEEecCCCCc-CHHHHH---HHh-ccCC----ceeEEEec-C------------------------------HhH
Q 015368          180 ESKLVLGFLHDLEGM-ESEELA---AAS-KLHS----DVNFYQTT-S------------------------------ADV  219 (408)
Q Consensus       180 ~~~~vi~f~~~~~~~-~~~~~~---~~a-~~~~----~~~f~~~~-~------------------------------~~l  219 (408)
                      .+.++|.|+.+||.+ +.....   .+. ++..    ++.+..++ +                              ..+
T Consensus        35 gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~~  114 (172)
T 2k6v_A           35 DKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVREA  114 (172)
T ss_dssp             TSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHHH
T ss_pred             CCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHHH
Confidence            567888899999997 655544   333 3332    46665442 1                              245


Q ss_pred             HhhcCCCC------------CCCCCeEEEeecCCCcccccCCcC--CHHHHHHHHhc
Q 015368          220 AEFFHIHP------------KSKRPALIFLHLEAGKATPFRHQF--TRLAIANFVTH  262 (408)
Q Consensus       220 ~~~~~i~~------------~~~~p~l~~~~~~~~~~~~y~g~~--~~~~i~~fi~~  262 (408)
                      ++.|++..            -.+.|+++++. .+.....+.|..  +.++|.++|+.
T Consensus       115 ~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~l~~~l~~  170 (172)
T 2k6v_A          115 AQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADLQA  170 (172)
T ss_dssp             HHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHHHH
T ss_pred             HHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHH
Confidence            55555420            01469999998 654555667776  78888888864

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=81.01  E-value=0.66  Score=37.75  Aligned_cols=42  Identities=17%  Similarity=0.137  Sum_probs=31.4

Q ss_pred             HhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       117 ~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ...++++||.|+||+++  +|+......|..+.+.+.+.|++.+
T Consensus       152 ~~~a~~~gv~gtPt~~i--ng~~~~~~~g~~~~~~l~~~i~~~l  193 (195)
T 3c7m_A          152 KASYDVAKIQGVPAYVV--NGKYLIYTKSIKSIDAMADLIRELA  193 (195)
T ss_dssp             GGHHHHHHHHCSSEEEE--TTTEEECGGGCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCccCEEEE--CCEEEeccCCCCCHHHHHHHHHHHH
Confidence            45678899999999655  7754333347789999999988765

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=81.00  E-value=6.1  Score=30.50  Aligned_cols=89  Identities=10%  Similarity=0.054  Sum_probs=54.7

Q ss_pred             cEEEEE--eeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc------------------c--ccchhhhccCCC
Q 015368          285 KQLWLF--APAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG------------------V--GRRVSQEFGVSG  341 (408)
Q Consensus       285 ~~~i~f--~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~------------------~--~~~l~~~~~i~~  341 (408)
                      ++++.|  ..+|. |......+.+++.+++++  ++.++.++.+..+                  .  ...+.+.||+..
T Consensus        38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~  115 (160)
T 1xvw_A           38 NVLLVFFPLAFTGICQGELDQLRDHLPEFEND--DSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFN  115 (160)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSS--SEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEE
T ss_pred             CEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcc
Confidence            555655  45666 888899999999998753  2888888875311                  0  235667788751


Q ss_pred             C--CCc--EEEEEccCCc-cccCCCCC----ChHHHHHHHHHH
Q 015368          342 N--APR--VIAYSARDAK-KYVLNGEL----TLSSIKSFGEEF  375 (408)
Q Consensus       342 ~--~~p--~i~i~~~~~~-~y~~~~~~----~~~~i~~Fi~~~  375 (408)
                      .  ..|  ..++.+.+|+ .+.+.|..    ..+++.+.++.+
T Consensus       116 ~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  158 (160)
T 1xvw_A          116 EQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAAL  158 (160)
T ss_dssp             TTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHT
T ss_pred             ccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            1  345  7777777444 33344433    345565555543

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=80.51  E-value=2.8  Score=34.11  Aligned_cols=105  Identities=13%  Similarity=0.120  Sum_probs=63.5

Q ss_pred             CccEEEEEe--eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc----c---------------------ccchh
Q 015368          283 PRKQLWLFA--PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG----V---------------------GRRVS  334 (408)
Q Consensus       283 ~~~~~i~f~--~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~----~---------------------~~~l~  334 (408)
                      +.++++.|.  .+|. |......+.+++.+++++  ++.++.++.+..+    |                     ...+.
T Consensus        33 gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  110 (198)
T 1zof_A           33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEK--GFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS  110 (198)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHT--TEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH
T ss_pred             CCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHH
Confidence            446666665  4665 888899999999998743  2888888875310    0                     23456


Q ss_pred             hhccCCCC---CCcEEEEEccCCc-cccCCCC----CChHHHHHHHHHHhcCccccccccCchhh
Q 015368          335 QEFGVSGN---APRVIAYSARDAK-KYVLNGE----LTLSSIKSFGEEFLEDKLLNQSDQISETI  391 (408)
Q Consensus       335 ~~~~i~~~---~~p~i~i~~~~~~-~y~~~~~----~~~~~i~~Fi~~~~~gk~~~kse~iP~~~  391 (408)
                      +.||+...   ..|..++++.+|+ .+.+.|.    .+.++|.+.|+.+...  ..+.+..|.+|
T Consensus       111 ~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l~~~--~~~~~~~p~~w  173 (198)
T 1zof_A          111 RDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHF--EEHGEVCPAGW  173 (198)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHHHHH--HSSCCCCC---
T ss_pred             HHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHHHHh--hccCCccCCcC
Confidence            67777411   3678888877444 3333332    3678888888887621  12344455554

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=80.46  E-value=2.9  Score=34.90  Aligned_cols=109  Identities=9%  Similarity=0.058  Sum_probs=62.0

Q ss_pred             CCccEEEEEe--eCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc----c---------------------ccch
Q 015368          282 DPRKQLWLFA--PAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG----V---------------------GRRV  333 (408)
Q Consensus       282 ~~~~~~i~f~--~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~----~---------------------~~~l  333 (408)
                      .++++++.|.  .++. |......+.+++.+++++  ++.++.+..+...    |                     ...+
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~--~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~  145 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSR--NCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEI  145 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTT--TEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHH
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHH
Confidence            3446666665  5666 889999999999999853  2888888776421    0                     1234


Q ss_pred             hhhccCCCC----CCcEEEEEccCCc-cccCCCCCCh-HHHHHHHHHHhcCcc-ccccccCchhhh
Q 015368          334 SQEFGVSGN----APRVIAYSARDAK-KYVLNGELTL-SSIKSFGEEFLEDKL-LNQSDQISETIL  392 (408)
Q Consensus       334 ~~~~~i~~~----~~p~i~i~~~~~~-~y~~~~~~~~-~~i~~Fi~~~~~gk~-~~kse~iP~~~~  392 (408)
                      .+.||+...    ..|..++++.+|+ .+.+.+..+. ..+.+.++.+.+.+. ..++..-|-+|+
T Consensus       146 ~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l~~~~~~~~~c~~~w~  211 (222)
T 3ztl_A          146 SKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAFQFVEKHGEVCPVNWK  211 (222)
T ss_dssp             HHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHSCBBCTTCC
T ss_pred             HHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhcccccCccCCcCcC
Confidence            566777421    3578888887544 3333332221 123444444433333 344555555554

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=80.88  E-value=0.37  Score=36.86  Aligned_cols=67  Identities=9%  Similarity=0.194  Sum_probs=39.9

Q ss_pred             EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc--c--------------------ccchhhhccCCCCC
Q 015368          287 LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG--V--------------------GRRVSQEFGVSGNA  343 (408)
Q Consensus       287 ~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~--~--------------------~~~l~~~~~i~~~~  343 (408)
                      +.++..+|. |......+.+++++++.+.+++.++.++.+...  +                    ...+.+.||+.  .
T Consensus        31 l~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~  108 (143)
T 2lus_A           31 FYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGIT--G  108 (143)
Confidence            345556666 888888888888888421112777777665331  0                    12455666663  3


Q ss_pred             CcEEEEEccCCc
Q 015368          344 PRVIAYSARDAK  355 (408)
Q Consensus       344 ~p~i~i~~~~~~  355 (408)
                      .|.+++++.+|+
T Consensus       109 ~P~~~lid~~G~  120 (143)
T 2lus_A          109 IPALVIVKKDGT  120 (143)
Confidence            577777765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	5e-22
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	2e-20
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	2e-14
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	3e-14
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	3e-14
d1bjxa_	110	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	7e-14
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	2e-13
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	2e-12
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	2e-12
d1dbya_	107	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	9e-12
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	2e-11
d2b5ea4	119	c.47.1.2 (A:23-141) Protein disulfide isomerase, P	5e-11
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	1e-10
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	4e-10
d1f9ma_	112	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	2e-09
d1fb6a_	104	c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia olera	2e-09
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	5e-09
d2djka1	133	c.47.1.2 (A:1-133) Protein disulfide isomerase, PD	5e-09
d1ti3a_	113	c.47.1.1 (A:) Thioredoxin {European aspen (Populus	1e-08
d2b5ea3	125	c.47.1.2 (A:240-364) Protein disulfide isomerase,	1e-08
d1fo5a_	85	c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-lik	3e-08
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	4e-08
d1ep7a_	112	c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardt	8e-08
d1qgva_	137	c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human	3e-07
d1a8la2	107	c.47.1.2 (A:120-226) Protein disulfide isomerase,	8e-07
d2fwha1	117	c.47.1.1 (A:428-544) Thiol:disulfide interchange p	9e-07
d2ifqa1	105	c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapien	3e-06
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	4e-06
d1r26a_	113	c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [Tax	9e-06
d1xwaa_	111	c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila m	1e-05
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	3e-05
d1syra_	103	c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plas	4e-05
d1gh2a_	107	c.47.1.1 (A:) Thioredoxin-like protein, N-terminal	4e-05
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	6e-05
d1xfla_	114	c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsi	7e-05
d1woua_	119	c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxi	1e-04
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	1e-04
d1lu4a_	134	c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc	9e-04
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	0.001

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 88.5 bits (219), Expect = 5e-22
 Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 9/116 (7%)

Query: 53  LYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSK-----KLAPEFAAAAKMLKGEAD 107
           L+ K  + L+   F + + K++ V+V F   + Y  K     +LA   A++  +L  E  
Sbjct: 1   LHTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVG 60

Query: 108 LVMVDAYLEKDLAKEY--NILAYPTLYLFVA--GVRQFQFFGERTRDVISAWVREK 159
           +      L  +L+++Y  +  +YP  YLF          + G      I  W++ +
Sbjct: 61  ISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQ 116

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 84.4 bits (208), Expect = 2e-20
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 15/117 (12%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV---- 111
              V L+  +F + + +    +V F     Y  K     F A +K        +++    
Sbjct: 2   TGCVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVG 59

Query: 112 ----DAYLEKDLAKEY--NILAYPTLYLFVAG---VRQFQFFGERTRDVISAWVREK 159
                    K L   Y  +   +P+++LF        Q     + T D + A+V   
Sbjct: 60  VKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSAN 116

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 66.7 bits (162), Expect = 2e-14
 Identities = 22/101 (21%), Positives = 48/101 (47%)

Query: 58  VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK 117
            ++L   NF + +  ++ V+V F+A WC   + +AP     A+    +  +  ++     
Sbjct: 2   TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61

Query: 118 DLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
           +   ++ I++ PTL LF  G    Q  G + ++ + A + +
Sbjct: 62  ETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLAD 102

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 66.8 bits (162), Expect = 3e-14
 Identities = 15/111 (13%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWS------KKLAPEFAAAAKMLKGEA-DLV 109
            V+++N KN+     K   + ++++             +        AA++L+ +     
Sbjct: 12  RVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFG 71

Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160
           +VD+  +  +AK+  +    +           ++ GE + D +  ++ + +
Sbjct: 72  LVDSEKDAAVAKKLGLTEEDS-IYVFKEDEVIEYDGEFSADTLVEFLLDVL 121

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 66.0 bits (160), Expect = 3e-14
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 1/107 (0%)

Query: 55  AKDVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           +K V+++    F SE +   + V+V F+A+WC   + ++P    AA        +V ++ 
Sbjct: 1   SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 60

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160
                  K+Y +   P L L           G  ++D + +++   +
Sbjct: 61  DPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL 107

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 7e-14
 Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 4/110 (3%)

Query: 167 ITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIH 226
           +     AE ++      V+GF  D+E   +++   A++   D+ F  T+++DV   + + 
Sbjct: 5   LPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQL- 63

Query: 227 PKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNA 276
               +  ++           F  + T+  + +F+ H + PLV+  T   A
Sbjct: 64  ---DKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTA 110

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 5/109 (4%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV---DA 113
            V+ L   NF+E +  ++ ++V FYA WC   K LAPE+A AA  LK E   + +   DA
Sbjct: 8   HVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDA 67

Query: 114 YLEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKM 160
             E DLA++Y +  YPT+  F  G      ++   R  D I  W++++ 
Sbjct: 68  TEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 4/122 (3%)

Query: 57  DVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL 115
            V  L GKN  E      ++V+V++YA WC   K+LAP +   A         V++    
Sbjct: 13  SVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLD 72

Query: 116 E-KDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREKMTLGTYSITTTDE 172
             ++  +   I  YPT+ L+  G       + G R+ D +  +++E            +E
Sbjct: 73  HTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKALYEE 132

Query: 173 AE 174
           A+
Sbjct: 133 AQ 134

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 61.4 bits (148), Expect = 2e-12
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 57  DVVSLNGKNFSEF-MGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGE--ADLVMVDA 113
            V  +  KN++E  +   ++V++ FYA WC   K LAP++     +       D V++  
Sbjct: 3   PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAK 62

Query: 114 YLEKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVRE 158
                      I  +PT+ L+ AG   +   + G RT + +  ++ E
Sbjct: 63  VDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAE 109

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 59.1 bits (142), Expect = 9e-12
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 58  VVSLNGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
             ++N   F   + ++   V+V F+A WC   + +AP     A   K +   V ++    
Sbjct: 3   AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDES 62

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            ++A EY I + PT+ +F  G +     G   +  I   V +
Sbjct: 63  PNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEK 104

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 55  AKDVVSLNGKNF-SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA 113
           +  ++ L   +F ++ +  +  ++V F+A WC   K +AP     A   +G+  +  ++ 
Sbjct: 1   SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNI 60

Query: 114 YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
                 A +Y I   PTL LF  G       G  ++  +  ++  
Sbjct: 61  DQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDA 105

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.6 bits (138), Expect = 5e-11
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 57  DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML-KGEADLVMVDAYL 115
            VV L   +F+E++  +  V+  F+A WC   K +APE+  AA+ L +    L  +D   
Sbjct: 11  AVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE 70

Query: 116 EKDLAKEYNILAYPTLYLFVAG--VRQFQFFGERTRDVISAWVREK 159
            +DL  E+NI  +P+L +F          + G RT + I  ++ ++
Sbjct: 71  NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQ 116

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 55.1 bits (132), Expect = 1e-10
 Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 76  VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV 135
            + +F +  C +          A K    + D+  +D  ++++ A EY ++A P + +  
Sbjct: 4   NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAIN- 62

Query: 136 AGVRQFQFFGERTRDVISAWVREKM 160
                 +F G  +R+ +   + ++M
Sbjct: 63  ---GVVRFVGAPSREELFEAINDEM 84

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 55.4 bits (133), Expect = 4e-10
 Identities = 10/112 (8%), Positives = 32/112 (28%), Gaps = 3/112 (2%)

Query: 50  WPLLYAKDVVSLNGKNFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEAD 107
           W  + A+    ++     +++ +  +  V++                     +       
Sbjct: 11  WQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTW 70

Query: 108 LV-MVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            V + D    + +   + +  +P   +F  G  +    G      +   +R 
Sbjct: 71  QVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRG 122

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 57  DVVSLNGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY 114
            V  +N   F   +    ++ V++  +  WC   K +AP++   A+       L +    
Sbjct: 7   KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQ 66

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISA 154
             K LAKE  I   PT  +        +  G +   ++ A
Sbjct: 67  ENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEA 106

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]} Length = 104

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

 Score = 52.6 bits (125), Expect = 2e-09
 Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 58  VVSLNGKNFSEFMGKN-RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE 116
           V  +N  ++ EF+ ++   VMV F+A WC   K +AP     AK   G+  +  ++    
Sbjct: 1   VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEA 60

Query: 117 KDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
             +A +YNI + PT+  F  G R+    G   +  ++  + +
Sbjct: 61  PGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEK 102

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 51.9 bits (124), Expect = 5e-09
 Identities = 10/112 (8%), Positives = 33/112 (29%), Gaps = 3/112 (2%)

Query: 50  WPLLYAKDVVSLNGKNFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKG-EA 106
           W  L  +    +      +++ +  +  +++                 A   +     + 
Sbjct: 5   WQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDW 64

Query: 107 DLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            + + D    + +   +N+  +P   +F  G  +    G      +   +R 
Sbjct: 65  QVAVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRS 116

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 52.2 bits (125), Expect = 5e-09
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 10/119 (8%)

Query: 266 PLVVTLTIHNAQFVFQDPRKQLWLFA-PAYGSDKVILTFEEVAKALKGKVNMLLHVYVEM 324
           PL+  +                ++FA  A    ++    + +A+A +G +N      ++ 
Sbjct: 6   PLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVIN---FGTIDA 62

Query: 325 NSEGVGRRVSQEFGVSG-NAPRVIAYSARDAKKYVL--NGELTLSSIKSFGEEFLEDKL 380
            + G     +    +     P          +K+      E+T  +IK+F ++F+  K+
Sbjct: 63  KAFG---AHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI 118

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)

Query: 64  KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY 123
           ++F +  G  + ++V F A+WC   K +AP FA  AK        + VD    K +A+E+
Sbjct: 17  EHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNV-TFLKVDVDELKAVAEEW 75

Query: 124 NILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT 161
           N+ A PT      G    +  G   +D +   V +  T
Sbjct: 76  NVEAMPTFIFLKDGKLVDKTVG-ADKDGLPTLVAKHAT 112

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 125

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 20/124 (16%)

Query: 271 LTIHNAQFVFQDPRKQLWLF-APAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGV 329
           +         +      +LF       ++    F E+AK  +G +N    V ++    G 
Sbjct: 5   IDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNF---VSIDARKFG- 60

Query: 330 GRRVSQEFGVSGNAPRVIAYSARDAKKYVLN-------------GELTLSSIKSFGEEFL 376
             R +    +    P    +   +  KY L                L   +I+S  ++FL
Sbjct: 61  --RHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFL 118

Query: 377 EDKL 380
           +   
Sbjct: 119 KGDA 122

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 48.4 bits (114), Expect = 3e-08
 Identities = 13/88 (14%), Positives = 35/88 (39%), Gaps = 4/88 (4%)

Query: 73  NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY 132
           ++  + +F +  C             A  +    ++  ++       A EY I+A PT+ 
Sbjct: 2   SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIV 61

Query: 133 LFVAGVRQFQFFGERTRDVISAWVREKM 160
           +        +F G  T++ +   +++++
Sbjct: 62  INGDV----EFIGAPTKEALVEAIKKRL 85

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 49.1 bits (116), Expect = 4e-08
 Identities = 13/105 (12%), Positives = 24/105 (22%), Gaps = 4/105 (3%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVD--- 112
           KD+         E + K            C + +K A   +      K     +  +   
Sbjct: 9   KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPS 68

Query: 113 -AYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV 156
                +     Y I   P       G    +     +   I  + 
Sbjct: 69  QLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSSMSAQEIKDFA 113

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 112

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

 Score = 48.3 bits (114), Expect = 8e-08
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 64  KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY 123
              ++   +++ ++V F A WC   K +AP F   +    G+   + VD      +A+  
Sbjct: 15  AQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAA 74

Query: 124 NILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMT 161
            I A PT +++  GV+     G  ++D + A V +   
Sbjct: 75  GITAMPTFHVYKDGVKADDLVG-ASQDKLKALVAKHAA 111

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 18/88 (20%), Positives = 35/88 (39%)

Query: 72  KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131
           ++R V++ F  +W     K+     + A+ +K  A + +VD     D  K Y +    T+
Sbjct: 21  EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTV 80

Query: 132 YLFVAGVRQFQFFGERTRDVISAWVREK 159
             F          G    + I+  + +K
Sbjct: 81  MFFFRNKHIMIDLGTGNNNKINWAMEDK 108

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 45.3 bits (106), Expect = 8e-07
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 76  VMVMFYANWCYWSKKLAPEFAAAAKML----KGEADLVMVDAYLEKDLAKEYNILAYPTL 131
            +++F    C +           A       KG+    MV+A    + A +YN++A P +
Sbjct: 18  RILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKI 77

Query: 132 YLFVAGVRQFQFFGERTRDVISAWVREKMT 161
            + V G  + +F G     +    +   ++
Sbjct: 78  VIQVNGEDRVEFEGAYPEKMFLEKLLSALS 107

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

 Score = 45.4 bits (106), Expect = 9e-07
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 56  KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLV------ 109
             + +++  N +    K + VM+  YA+WC   K+      +  ++ K  AD V      
Sbjct: 5   TQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANV 64

Query: 110 MVDAYLEKDLAKEYNILAYPTLYLFVAG---VRQFQFFGERTRDVISAWVREK 159
             +   +  L K  N+L  PT+  F        Q +  G    +  SA +R++
Sbjct: 65  TANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDR 117

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 65  NFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE 122
            F E +    ++ V+V F A WC   K + P F + ++        + VD    +D+A E
Sbjct: 10  AFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVDDCQDVASE 68

Query: 123 YNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
             +   PT   F  G +  +F G   ++ + A + E
Sbjct: 69  CEVKCMPTFQFFKKGQKVGEFSG-ANKEKLEATINE 103

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 44.1 bits (103), Expect = 4e-06
 Identities = 19/129 (14%), Positives = 40/129 (31%), Gaps = 30/129 (23%)

Query: 60  SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV-------- 111
           + + +  S ++ K++  ++ F+A+WC        +    A+  K  +  ++         
Sbjct: 10  TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH 69

Query: 112 ---------------------DAYLEKDLAKEYNILAYPTLYLFVA-GVRQFQFFGERTR 149
                                       +A+  NI  YP+  L    G  Q    G    
Sbjct: 70  EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINE 129

Query: 150 DVISAWVRE 158
               A +R+
Sbjct: 130 AQALALIRD 138

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]} Length = 113

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

 Score = 42.5 bits (99), Expect = 9e-06
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 64  KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY 123
           + F   M ++   +  F A WC   K +       A           VDA    ++  + 
Sbjct: 17  EQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYE-FPTVKFAKVDADNNSEIVSKC 75

Query: 124 NILAYPTLYLFVAGVRQFQFFG---ERTRDVISAWVRE 158
            +L  PT  +  +G       G      R  +   +++
Sbjct: 76  RVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIKD 113

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 111

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.8 bits (97), Expect = 1e-05
 Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 72  KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL 131
             + V++ F+A WC   K ++P+    +        ++ VD    +D+A EYNI + PT 
Sbjct: 24  SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTF 83

Query: 132 YLFVAGVRQFQFFGERTRDVISAWVREKM 160
                GV+  +F G   +  +   ++  +
Sbjct: 84  VFLKNGVKVEEFAGANAKR-LEDVIKANI 111

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 5/87 (5%)

Query: 62  NGKNFSEFM---GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD 118
            G+ F E +    K   ++V  Y +       L       A           + A     
Sbjct: 106 TGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAE-YPMVKFCKIRASNT-G 163

Query: 119 LAKEYNILAYPTLYLFVAGVRQFQFFG 145
               ++    PTL ++  G     F  
Sbjct: 164 AGDRFSSDVLPTLLVYKGGELISNFIS 190

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 103

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 40.2 bits (93), Expect = 4e-05
 Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 55  AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY 114
            K V S     F   + +N  V+V F+A WC   K++AP +   +K        + VD  
Sbjct: 2   VKIVTSQ--AEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKM-VFIKVDVD 58

Query: 115 LEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
              ++ ++ NI + PT  ++  G       G      +   + +
Sbjct: 59  EVSEVTEKENITSMPTFKVYKNGSSVDTLLG-ANDSALKQLIEK 101

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 65  NFSEFMGKNRN--VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKE 122
           +F   +    +   +V F    C    ++AP F++ +         + VD +  +  A  
Sbjct: 11  DFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVF-LEVDVHQCQGTAAT 69

Query: 123 YNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE 158
            NI A PT   F   VR  Q+ G      +   +++
Sbjct: 70  NNISATPTFQFFRNKVRIDQYQG-ADAVGLEEKIKQ 104

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 64  KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV--DAYLEKDLAK 121
               E       +MV+ + +WC   K L P+FA + ++ +   + VMV  +   E     
Sbjct: 16  DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDED 75

Query: 122 EYNILAYPTLYLFV--AGVRQFQFFGER 147
                 Y    LF+  +G    +   E 
Sbjct: 76  FSPDGGYIPRILFLDPSGKVHPEIINEN 103

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 114

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 39.8 bits (92), Expect = 7e-05
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 64  KNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY 123
           +   +       V+V F A+WC   + +AP FA  AK L      + VD    K +A ++
Sbjct: 19  EQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLF-LKVDTDELKSVASDW 77

Query: 124 NILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM 160
            I A PT      G    +  G   +D + + + + +
Sbjct: 78  AIQAMPTFMFLKEGKILDKVVG-AKKDELQSTIAKHL 113

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 16/100 (16%)

Query: 56  KDVVSLNGKNFSEFMGKNRN--VMVMFYAN-------WCYWSKKLAPEFAAAAKMLKGEA 106
           ++V     + F   + ++    +   F  +       WC    +  P      K +    
Sbjct: 2   EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGC 61

Query: 107 DLVMVDAYLEKDL-------AKEYNILAYPTLYLFVAGVR 139
             +      +           K   + A PTL  +    +
Sbjct: 62  VFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQK 101

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 28/126 (22%)

Query: 61  LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD-- 118
           LNG+   E +   +  ++ F++  C+  K+  P+        + + ++V V     +D  
Sbjct: 17  LNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDL 76

Query: 119 -------------------------LAKEYNILAYPTLYLFVA-GVRQFQFFGERTRDVI 152
                                    L   +     P  Y+F   G  +    G     ++
Sbjct: 77  DPGKIKETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKML 136

Query: 153 SAWVRE 158
              V  
Sbjct: 137 EKRVNR 142

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.9 bits (84), Expect = 9e-04
 Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 24/123 (19%)

Query: 60  SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL---- 115
           +L+G  F     + +  ++ F+  WC +    AP  +  A        + +         
Sbjct: 11  TLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAM 70

Query: 116 -----------------EKDLAKEYNILAYPTLYLFVA---GVRQFQFFGERTRDVISAW 155
                            +  +   YN+   P    + A              ++D +S  
Sbjct: 71  QSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGR 130

Query: 156 VRE 158
           V  
Sbjct: 131 VAA 133

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 26/107 (24%)

Query: 54  YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMV-- 111
           Y+ +V+     + +      + V   F A+WC  S+   P+     K    + +  ++  
Sbjct: 9   YSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLI 68

Query: 112 ------------------------DAYLEKDLAKEYNILAYPTLYLF 134
                                   D    + L   +++ + PTL   
Sbjct: 69  SWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGV 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.94
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.93
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.93
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.93
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.93
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.92
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.9
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.9
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.89
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.89
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.89
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.88
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.88
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.88
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.88
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.88
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.88
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.87
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.86
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.85
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.84
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.84
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.83
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.83
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	99.82
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.81
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.81
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.78
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.76
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.74
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.73
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.71
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.7
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.69
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.68
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.63
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.61
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.6
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.56
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.54
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	99.54
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.52
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.5
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	99.49
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.42
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.42
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.4
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.37
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.35
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.32
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.16
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.1
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.01
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.9
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.87
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.84
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.84
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.79
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.76
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.74
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.73
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.72
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.72
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.7
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.69
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.68
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.66
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.65
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.65
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	98.58
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	98.58
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	98.58
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.53
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.53
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.47
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.46
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	98.45
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.44
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	98.43
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.43
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	98.43
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.42
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.42
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.4
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.4
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	98.39
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.37
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	98.37
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.35
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.34
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	98.34
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.33
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.29
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	98.22
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.21
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	98.19
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	98.18
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	98.18
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	98.16
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.16
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	98.14
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	98.14
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.13
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.99
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.97
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.95
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	97.91
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	97.89
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	97.86
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.83
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.78
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.78
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.75
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	97.74
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	97.74
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.59
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.57
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	97.55
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.54
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.52
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.49
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	97.46
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	97.05
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	96.96
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.75
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.74
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	95.21
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	94.93
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	94.7
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	94.48
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	94.4
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	93.78
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	93.51
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	93.13
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	93.05
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	93.0
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	92.61
d1wjka_	100	Thioredoxin-like structure containing protein C330	91.73
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	90.53
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	89.94
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	89.05
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	87.96
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	87.5
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	85.77
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	85.76
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	85.55
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	83.14

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.94  E-value=3.7e-26  Score=171.61  Aligned_cols=103  Identities=21%  Similarity=0.433  Sum_probs=98.6

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG  137 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g  137 (408)
                      ...||+++|++.+.++++++|+|||+||++|+.+.|.++++++++++++.|+.|||++++++|++|+|.++||+++|++|
T Consensus         2 ~i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~V~~~Pt~~~~~~G   81 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGG   81 (105)
T ss_dssp             CEEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCBSSEEEEEETT
T ss_pred             EEEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHHHCCcceeeEEEEEECC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeEEeeCCCCHHHHHHHHHhHh
Q 015368          138 VRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       138 ~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +.+.++.|..+.++|.++|++.+
T Consensus        82 ~~~~~~~G~~~~~~l~~~i~~~L  104 (105)
T d1nw2a_          82 EPVKQLIGYQPKEQLEAQLADVL  104 (105)
T ss_dssp             EEEEEEESCCCHHHHHHHTTTTC
T ss_pred             EEEEEEECCCCHHHHHHHHHHHh
Confidence            99999999999999999998765

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.93  E-value=7.7e-26  Score=170.79  Aligned_cols=105  Identities=19%  Similarity=0.331  Sum_probs=99.4

Q ss_pred             CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      ..+.++|+++|+..+ +++++++|.|||+||++|+.+.|.|+++++++.+.+.++.||+++++++|++|+|+++||+++|
T Consensus         2 ~~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~   81 (108)
T d1thxa_           2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV   81 (108)
T ss_dssp             CSEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHHHHHHhcccCCCEEEEE
Confidence            468999999999755 6778999999999999999999999999999998999999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++|+.+.++.|.++.++|.+||++++
T Consensus        82 ~~g~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d1thxa_          82 KGEQILDSTEGVISKDKLLSFLDTHL  107 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            99999999999999999999999876

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.8e-25  Score=168.75  Aligned_cols=105  Identities=21%  Similarity=0.402  Sum_probs=99.5

Q ss_pred             CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEE
Q 015368           56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLF  134 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~  134 (408)
                      ..+.+||+++|++.+ .++++++|+|||+||+||+.+.|.+.+++.++..++.++.+|+++++.++++|+|+++||+++|
T Consensus         2 ~~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l~~~~~v~~~PT~~~~   81 (108)
T d2trxa_           2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF   81 (108)
T ss_dssp             TTEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEE
T ss_pred             CCceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhhHHHHhCCCcEEEEEEE
Confidence            478899999999754 7789999999999999999999999999999988999999999999999999999999999999


Q ss_pred             eCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          135 VAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       135 ~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++|+.+.++.|.++.+.|.+||++++
T Consensus        82 ~~G~~v~~~~G~~~~~~l~~~i~~~L  107 (108)
T d2trxa_          82 KNGEVAATKVGALSKGQLKEFLDANL  107 (108)
T ss_dssp             ETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCHHHHHHHHHHhc
Confidence            99999999999999999999999876

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.93  E-value=1.9e-25  Score=167.43  Aligned_cols=103  Identities=26%  Similarity=0.462  Sum_probs=97.3

Q ss_pred             cEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368           58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        58 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~  136 (408)
                      +.++|+++|++.+ .++++++|+|||+||++|+.+.|.+.++++.+.+.+.++.||+++++++|++|+|+++||+++|++
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l~~~~~V~~~Pt~~~~~~   80 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKN   80 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEET
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccchhhhhhcceeeeeEEEEEEc
Confidence            4689999999866 667899999999999999999999999999999899999999999999999999999999999999


Q ss_pred             CeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          137 GVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       137 g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      |+.+.++.|..+.+.|.+||++++
T Consensus        81 G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          81 GERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             TEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHhC
Confidence            999999999999999999999874

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.9e-25  Score=168.70  Aligned_cols=109  Identities=28%  Similarity=0.496  Sum_probs=100.5

Q ss_pred             cCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      .++.++.|+.++|++.+.++++++|.|||+||++|+++.|.|+++++.+++ ++.|+.|||++++++|++|+|.++||++
T Consensus         8 ~~s~v~~lt~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pti~   87 (119)
T d2b5ea4           8 EDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLK   87 (119)
T ss_dssp             TTSSCEECCTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CCCccEEcCHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccccCCeEE
Confidence            456889999999999999999999999999999999999999999999975 7999999999999999999999999999


Q ss_pred             EEeCCeE--eEEeeCCCCHHHHHHHHHhHhCC
Q 015368          133 LFVAGVR--QFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       133 ~~~~g~~--~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      +|++|+.  ...|.|.++.+.|.+||+++.+|
T Consensus        88 ~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          88 IFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP  119 (119)
T ss_dssp             EEETTCTTCEEECCSCCSHHHHHHHHHHHTSC
T ss_pred             EEECCEEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            9998854  35688999999999999998765

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.92  E-value=3.6e-25  Score=166.77  Aligned_cols=103  Identities=23%  Similarity=0.378  Sum_probs=97.2

Q ss_pred             cEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeC
Q 015368           58 VVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVA  136 (408)
Q Consensus        58 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~  136 (408)
                      +..+|+++|++.+ +++++++|+|||+||++|+.+.|.+.++++++.+++.++.||+++++++|++|+|+++||+++|++
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~~   82 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKG   82 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESS
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccchhHHHHhcccceEEEEEEEC
Confidence            4568999998766 667899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          137 GVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       137 g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      |+.+.++.|..+.++|.+||++++
T Consensus        83 G~~v~~~~G~~~~~~l~~~i~~~L  106 (107)
T d1dbya_          83 GKKCETIIGAVPKATIVQTVEKYL  106 (107)
T ss_dssp             SSEEEEEESCCCHHHHHHHHHHHC
T ss_pred             CeEEEEEeCCCCHHHHHHHHHHhh
Confidence            999999999999999999999876

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-24  Score=167.69  Aligned_cols=109  Identities=37%  Similarity=0.623  Sum_probs=100.9

Q ss_pred             CCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           55 AKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        55 ~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      .+.|..|+.++|++.+.++++++|.|||+||++|+.+.|.|.++++.+.+   ++.++.|||++++.+|++|+|.++||+
T Consensus         6 ~~~V~~l~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~   85 (120)
T d1meka_           6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI   85 (120)
T ss_dssp             ETTEEECCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEE
T ss_pred             CCCeEEcCHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCccCCeE
Confidence            35789999999999998999999999999999999999999999999865   699999999999999999999999999


Q ss_pred             EEEeCCeE--eEEeeCCCCHHHHHHHHHhHhCCC
Q 015368          132 YLFVAGVR--QFQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       132 ~~~~~g~~--~~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                      ++|++|+.  ..+|.|.++.++|.+||+++++|+
T Consensus        86 ~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          86 KFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA  119 (120)
T ss_dssp             EEEESSCSSSCEECCCCSSHHHHHHHHHTTSCCC
T ss_pred             EEEECCeEeeeEEecCCCCHHHHHHHHHHhhCCC
Confidence            99998854  467899999999999999999875

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.90  E-value=2.3e-23  Score=157.56  Aligned_cols=104  Identities=23%  Similarity=0.406  Sum_probs=94.9

Q ss_pred             CcEEc-ChhhHHHHH----cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           57 DVVSL-NGKNFSEFM----GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        57 ~~~~l-~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      ++..+ +.++|++.+    .++++++|+|||+||++|+.+.|.|+++++++++++.|+.||++++++++++|+|+++||+
T Consensus         3 ~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~   82 (112)
T d1ep7a_           3 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTF   82 (112)
T ss_dssp             SEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEE
T ss_pred             CEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccccccCCCEE
Confidence            56667 677777655    4679999999999999999999999999999988899999999999999999999999999


Q ss_pred             EEEeCCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          132 YLFVAGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       132 ~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ++|++|+.+.++.|. +.++|.+||+++.+
T Consensus        83 ~~~~~G~~v~~~~G~-~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          83 HVYKDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             EEEETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             EEEECCEEEEEEeCc-CHHHHHHHHHHHhC
Confidence            999999999999995 89999999998864

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=8.9e-23  Score=154.40  Aligned_cols=104  Identities=21%  Similarity=0.411  Sum_probs=93.6

Q ss_pred             CCcEEc-ChhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSL-NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l-~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      ..+.++ +.++|+..+  .++++++|+|||+||++|+.+.|.++++++++++.+.++.||++++++++++|+|+++||++
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~~~Pt~~   84 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFV   84 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCccccEEE
Confidence            355666 457888766  46789999999999999999999999999999989999999999999999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|++|+.+.++.|. +.++|.++|++++
T Consensus        85 ~~~~G~~v~~~~G~-~~~~l~~~I~~~l  111 (111)
T d1xwaa_          85 FLKNGVKVEEFAGA-NAKRLEDVIKANI  111 (111)
T ss_dssp             EEETTEEEEEEESC-CHHHHHHHHHHTC
T ss_pred             EEECCEEEEEEeCC-CHHHHHHHHHhcC
Confidence            99999999999996 5678999998764

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.89  E-value=4.4e-23  Score=159.32  Aligned_cols=109  Identities=16%  Similarity=0.218  Sum_probs=94.5

Q ss_pred             cCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhH------HhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCC
Q 015368           54 YAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWS------KKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNIL  126 (408)
Q Consensus        54 ~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C------~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~  126 (408)
                      ..+.+.+||++||++.+.+++.++|+||||||+||      ..+.+.++.+++.+++ ++.|+.|||++++++|++|+|+
T Consensus         9 ~~~~V~~L~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~   88 (124)
T d1a8ya1           9 GVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT   88 (124)
T ss_dssp             CCCCCEECCTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCC
T ss_pred             CCCccEECCHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccc
Confidence            34578999999999999889999999999999964      4455556666666655 7999999999999999999999


Q ss_pred             cCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHhCCC
Q 015368          127 AYPTLYLFVAGVRQFQFFGERTRDVISAWVREKMTLG  163 (408)
Q Consensus       127 ~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~  163 (408)
                      ++||+++|++|+ ...|.|.++.+.|.+||.+.+.+|
T Consensus        89 ~yPTi~~f~~g~-~~~y~G~r~~~~l~~fi~~~l~~P  124 (124)
T d1a8ya1          89 EEDSIYVFKEDE-VIEYDGEFSADTLVEFLLDVLEDP  124 (124)
T ss_dssp             STTCEEEEESSS-EEECCSCCSHHHHHHHHHHHHSCS
T ss_pred             cCCcEEEeccCc-cEEeeCCCCHHHHHHHHHHhcCCC
Confidence            999999999994 568999999999999999988654

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=2.2e-22  Score=152.66  Aligned_cols=103  Identities=25%  Similarity=0.375  Sum_probs=92.6

Q ss_pred             CCcEEc-ChhhHHHHH----cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcE
Q 015368           56 KDVVSL-NGKNFSEFM----GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPT  130 (408)
Q Consensus        56 ~~~~~l-~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt  130 (408)
                      ..++.+ +.++|++.+    .++++++|+|||+||++|+.+.|.++++++.++ ++.|+.||++++++++++|+|+++||
T Consensus         6 ~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~~~~~~l~~~~~V~~~Pt   84 (114)
T d1xfla_           6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTDELKSVASDWAIQAMPT   84 (114)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTSHHHHHHTTCCSSSE
T ss_pred             CcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccccc-ccceeEEEeeeceeeccccceeeeEE
Confidence            455555 677777544    568999999999999999999999999999987 58999999999999999999999999


Q ss_pred             EEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          131 LYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       131 ~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +++|++|+.+.++.|. +.++|.++|.+++
T Consensus        85 ~~~~~~G~~v~~~~G~-~~~~l~~~i~k~l  113 (114)
T d1xfla_          85 FMFLKEGKILDKVVGA-KKDELQSTIAKHL  113 (114)
T ss_dssp             EEEEETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEECCEEEEEEeCc-CHHHHHHHHHHhh
Confidence            9999999999999995 7899999999886

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.88  E-value=1.4e-22  Score=151.09  Aligned_cols=97  Identities=21%  Similarity=0.416  Sum_probs=90.7

Q ss_pred             cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEe
Q 015368           61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQ  140 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~  140 (408)
                      -+.++|++.+.++++++|+|||+||++|+.+.|.++++++++. ++.|+.+|++++++++++|+|.++||+++|++|+.+
T Consensus         6 ~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~-~~~~~~vd~d~~~~~~~~~~V~~~Pt~i~~k~G~~v   84 (103)
T d1syra_           6 TSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSV   84 (103)
T ss_dssp             CSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTTHHHHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhccc-ceEEEeeccccCcceeeeeeeecceEEEEEECCEEE
Confidence            3678899999999999999999999999999999999999987 678999999999999999999999999999999999


Q ss_pred             EEeeCCCCHHHHHHHHHhH
Q 015368          141 FQFFGERTRDVISAWVREK  159 (408)
Q Consensus       141 ~~~~g~~~~~~l~~~i~~~  159 (408)
                      .++.|. +.+.|.+||+++
T Consensus        85 ~~~~G~-~~~~l~~~i~k~  102 (103)
T d1syra_          85 DTLLGA-NDSALKQLIEKY  102 (103)
T ss_dssp             EEEESC-CHHHHHHHHHTT
T ss_pred             EEEeCc-CHHHHHHHHHhh
Confidence            999995 789999999875

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-22  Score=150.91  Aligned_cols=97  Identities=23%  Similarity=0.288  Sum_probs=90.2

Q ss_pred             ChhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368           62 NGKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        62 ~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      +.++|++.+  .++++++|+|||+||++|+.+.|.++++++++. ++.|+.||++++++++++|+|.++||+++|++|+.
T Consensus         8 s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-~~~f~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~   86 (107)
T d1gh2a_           8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-QAVFLEVDVHQCQGTAATNNISATPTFQFFRNKVR   86 (107)
T ss_dssp             SGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTSHHHHHHTTCCSSSEEEEEETTEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccc-cccccccccccchhhhhhcCceeceEEEEEECCEE
Confidence            678898877  347899999999999999999999999999987 69999999999999999999999999999999999


Q ss_pred             eEEeeCCCCHHHHHHHHHhHh
Q 015368          140 QFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       140 ~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +.++.|. +.+.|.++|++++
T Consensus        87 v~~~~G~-~~~~l~~~i~k~l  106 (107)
T d1gh2a_          87 IDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             EEEEESS-CHHHHHHHHHHHH
T ss_pred             EEEEeCC-CHHHHHHHHHHhh
Confidence            9999995 8999999999876

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.88  E-value=2.7e-22  Score=151.40  Aligned_cols=103  Identities=20%  Similarity=0.323  Sum_probs=93.5

Q ss_pred             CCcEEcChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-cHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSLNGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-EKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-~~~~~~~~~i~~~Pt~~  132 (408)
                      +.+.+++.++|...+.  ++++++|+||++||++|+.+.|.|+++++++. ++.++.+|+++ +++++++|+|+++||++
T Consensus         6 g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-~v~~~~vd~~~~~~~l~~~~~V~~~Pt~~   84 (112)
T d1f9ma_           6 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-DVIFLKLDCNQENKTLAKELGIRVVPTFK   84 (112)
T ss_dssp             TSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSTTHHHHHHHCCSSSSEEE
T ss_pred             eeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccc-cceeecccccccchhhHhheeeccCCEEE
Confidence            5788999999998884  35799999999999999999999999999987 68999999975 79999999999999999


Q ss_pred             EEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          133 LFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       133 ~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|++|+.+.++.|. +.+.+.++|++..
T Consensus        85 ~~k~G~~v~~~~G~-~~~~l~e~i~~~~  111 (112)
T d1f9ma_          85 ILKENSVVGEVTGA-KYDKLLEAIQAAR  111 (112)
T ss_dssp             EEETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             EEECCEEEEEEeCC-CHHHHHHHHHHcc
Confidence            99999999999997 6788999998753

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.9e-22  Score=149.82  Aligned_cols=97  Identities=25%  Similarity=0.392  Sum_probs=88.3

Q ss_pred             ChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368           62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        62 ~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      +.++|++.+.  ++++++|+|||+||++|+.+.|.+.++++.+. ++.|+.||++++++++++|+|+++||+++|++|+.
T Consensus         7 s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~-~~~~~~vd~d~~~~~~~~~~V~~~Pt~~~~~~G~~   85 (105)
T d2ifqa1           7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-NVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQK   85 (105)
T ss_dssp             SHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccc-cceeeecccccCHhHHHHcCceEEEEEEEEECCEE
Confidence            5577888773  46899999999999999999999999999987 57899999999999999999999999999999999


Q ss_pred             eEEeeCCCCHHHHHHHHHhHh
Q 015368          140 QFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       140 ~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +.++.|. +.+.|.++|++.+
T Consensus        86 v~~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          86 VGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             EEEEESC-CHHHHHHHHHHHC
T ss_pred             EEEEeCC-CHHHHHHHHHhhC
Confidence            9999996 7899999998764

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.88  E-value=4.3e-22  Score=150.43  Aligned_cols=102  Identities=19%  Similarity=0.311  Sum_probs=93.1

Q ss_pred             CcEEc-ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           57 DVVSL-NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        57 ~~~~l-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      .++++ +.++|++.+.++++++|+|||+||++|+.+.|.++++++++. ++.|+.||++++++++++|||.++||+++|+
T Consensus         9 ~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~~~   87 (113)
T d1r26a_           9 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDADNNSEIVSKCRVLQLPTFIIAR   87 (113)
T ss_dssp             CCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETTTCHHHHHHTTCCSSSEEEEEE
T ss_pred             ceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccc-cccccccccccchhhHHHccccCCCEEEEEE
Confidence            35555 778999999999999999999999999999999999999986 8999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|+.+.++.|. +.+.+.++|++.+
T Consensus        88 ~G~~v~~~~G~-~~~~l~~~l~~~i  111 (113)
T d1r26a_          88 SGKMLGHVIGA-NPGMLRQKLRDII  111 (113)
T ss_dssp             TTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             CCEEEEEEeCC-CHHHHHHHHHHHh
Confidence            99999999996 6788888887654

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.88  E-value=2.2e-22  Score=152.57  Aligned_cols=93  Identities=29%  Similarity=0.424  Sum_probs=85.5

Q ss_pred             HHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeC
Q 015368           66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFG  145 (408)
Q Consensus        66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g  145 (408)
                      |+....++++++|.|||+||++|+.+.|.|+++++++. ++.++.||++++++++++|+|+++||+++|++|+.+.++.|
T Consensus        19 l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~d~~~~l~~~~~I~~~Pt~~~~k~G~~v~~~~G   97 (113)
T d1ti3a_          19 FEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVDKTVG   97 (113)
T ss_dssp             HHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETTTCHHHHHHHHCSSTTEEEEEETTEEEEEEEC
T ss_pred             HHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCC-CceEEeeeeeccccccccCeecccceEEEEECCEEEEEEcC
Confidence            44455678999999999999999999999999999986 68999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhHh
Q 015368          146 ERTRDVISAWVREKM  160 (408)
Q Consensus       146 ~~~~~~l~~~i~~~~  160 (408)
                       .+.++|.++|.++.
T Consensus        98 -~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          98 -ADKDGLPTLVAKHA  111 (113)
T ss_dssp             -CCTTHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHh
Confidence             58899999999875

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=7.1e-23  Score=161.90  Aligned_cols=117  Identities=24%  Similarity=0.439  Sum_probs=98.4

Q ss_pred             CCCCccCCCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCcccHhHHHHcC
Q 015368           49 TWPLLYAKDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAYLEKDLAKEYN  124 (408)
Q Consensus        49 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~~~~~~~~~  124 (408)
                      ..|...++.+..|++++|++.+ ..+++++|+||||||++|+++.|.|+++++.+++   .+.++.+|++  .++|++|+
T Consensus         5 ~ip~~~~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~--~~~~~~~~   82 (140)
T d2b5ea1           5 EIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT--ENDVRGVV   82 (140)
T ss_dssp             CCCCCCSCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG--GCCCSSCC
T ss_pred             cCCccCCCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc--chhccccc
Confidence            3445556789999999999887 5678999999999999999999999999999865   5666666664  56899999


Q ss_pred             CCcCcEEEEEeCCeEe--EEeeCCCCHHHHHHHHHhHhCCCcccc
Q 015368          125 ILAYPTLYLFVAGVRQ--FQFFGERTRDVISAWVREKMTLGTYSI  167 (408)
Q Consensus       125 i~~~Pt~~~~~~g~~~--~~~~g~~~~~~l~~~i~~~~~~~~~~i  167 (408)
                      |+++||+++|++|+..  ..|.|.++.+.|.+||.++....+...
T Consensus        83 v~~~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~~~~~~  127 (140)
T d2b5ea1          83 IEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGK  127 (140)
T ss_dssp             CSSSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTTCCCHH
T ss_pred             cccCCeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCCCCCChh
Confidence            9999999999988543  468899999999999999887766543

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=4.4e-22  Score=153.00  Aligned_cols=104  Identities=22%  Similarity=0.301  Sum_probs=91.5

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC---CcEEEEEeCc-----ccHhHHHHcCC--C
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG---EADLVMVDAY-----LEKDLAKEYNI--L  126 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~v~~~~v~~~-----~~~~~~~~~~i--~  126 (408)
                      .+++|++.+|++.+.+++.+||.||||||+||++  |+|.++++.+..   ++.++.|||+     +++++|++|+|  +
T Consensus         3 g~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~   80 (122)
T d2c0ga2           3 GCVDLDELSFEKTVERFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK   80 (122)
T ss_dssp             TCEECCTTTHHHHHTTSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTT
T ss_pred             ceEEcChHhHHHHHhcCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccC
Confidence            5789999999999999999999999999999994  999999988743   7999999986     46899999988  5


Q ss_pred             cCcEEEEEeCCe---EeEEeeCCCCHHHHHHHHHhHhCC
Q 015368          127 AYPTLYLFVAGV---RQFQFFGERTRDVISAWVREKMTL  162 (408)
Q Consensus       127 ~~Pt~~~~~~g~---~~~~~~g~~~~~~l~~~i~~~~~~  162 (408)
                      ++||+++|++|.   ....|.|.++.++|.+||+++.+-
T Consensus        81 ~~PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~~~  119 (122)
T d2c0ga2          81 NFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL  119 (122)
T ss_dssp             SCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSC
T ss_pred             CCCcEEEEeCCcccccccccCCCCCHHHHHHHHHHhcCc
Confidence            799999999764   234678999999999999999864

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.86  E-value=2.6e-21  Score=145.43  Aligned_cols=100  Identities=19%  Similarity=0.234  Sum_probs=87.5

Q ss_pred             cChhhHHHHHcCCCcE-EEEEecCCChhHHhhhHHHHHHHHHh----cCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEe
Q 015368           61 LNGKNFSEFMGKNRNV-MVMFYANWCYWSKKLAPEFAAAAKML----KGEADLVMVDAYLEKDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~-~v~f~a~wC~~C~~~~p~~~~~~~~~----~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~  135 (408)
                      |+++..+.+...++++ ++.|||+||+||+++.|.+++++.+.    .+.|.+..+|++++++++++|+|.++||+++++
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l~~~~~V~~vPTi~i~~   81 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQV   81 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEEE
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccccccccccccceEEEEEe
Confidence            5667776666555655 55799999999999999999998653    337999999999999999999999999999999


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|+...++.|..+.+.+.++|.+.+
T Consensus        82 ~G~~~~~~~G~~~~~~~~~~i~~al  106 (107)
T d1a8la2          82 NGEDRVEFEGAYPEKMFLEKLLSAL  106 (107)
T ss_dssp             TTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHhh
Confidence            9999999999999999999999876

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=6.6e-22  Score=152.85  Aligned_cols=109  Identities=6%  Similarity=0.099  Sum_probs=98.9

Q ss_pred             CcEEcChhhHHHHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           57 DVVSLNGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      ....++..+|+..+.+  +++|+|.|||+||++|+.+.|.+.++++++.+ .+.++.||++++++++++|+|.++||+++
T Consensus        18 g~~~~~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la~~~~V~~~PT~~~   97 (132)
T d2hfda1          18 GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLV   97 (132)
T ss_dssp             TCEEECHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHHHHHTCCSCCEEEE
T ss_pred             CCcccccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHHHhhccCcceeEEE
Confidence            4556889999987743  46889999999999999999999999999987 57889999999999999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHhCCCcc
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKMTLGTY  165 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~~~~~~  165 (408)
                      |++|+.+.++.|.++.+++.++|+..+.++..
T Consensus        98 ~~~G~~v~~~~G~~~~~~l~~~i~~ll~~~~e  129 (132)
T d2hfda1          98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQQE  129 (132)
T ss_dssp             EETTEEEEEECCCSCHHHHHHHHHHHHSCSSC
T ss_pred             EEcCcEeeeecCCCCHHHHHHHHHHHhCcccc
Confidence            99999999999999999999999998877653

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=7.6e-21  Score=147.68  Aligned_cols=98  Identities=18%  Similarity=0.227  Sum_probs=82.8

Q ss_pred             ChhhHHHHHc--CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeE
Q 015368           62 NGKNFSEFMG--KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVR  139 (408)
Q Consensus        62 ~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~  139 (408)
                      +.+++++++.  ++++++|.|||+||++|+++.|.++++++++++.+.|+.||++++++++++|+|+++||+++|.+|+.
T Consensus         9 s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~~~PT~~~f~~g~~   88 (137)
T d1qgva_           9 NGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKH   88 (137)
T ss_dssp             SHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEE
T ss_pred             CHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCeeeEEEEEEEeCCcE
Confidence            5678988773  56799999999999999999999999999999889999999999999999999999999999999987


Q ss_pred             eEEeeCC----------CCHHHHHHHHHhH
Q 015368          140 QFQFFGE----------RTRDVISAWVREK  159 (408)
Q Consensus       140 ~~~~~g~----------~~~~~l~~~i~~~  159 (408)
                      +....|.          .+.+++.+.++..
T Consensus        89 i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          89 IMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             EEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             EEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            6544443          2455555555543

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.84  E-value=4.3e-22  Score=152.22  Aligned_cols=106  Identities=25%  Similarity=0.457  Sum_probs=88.4

Q ss_pred             CCcEEcChhhHHHHH-cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHHHHcCCCcCcEEE
Q 015368           56 KDVVSLNGKNFSEFM-GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLY  132 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~~~Pt~~  132 (408)
                      +.|..|++++|++.+ ++++++||+|||+||+||+++.|.|+++++.+.+  ...+..+++.+....+.+++|+++||++
T Consensus         2 g~V~~lt~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pti~   81 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQGFPTIK   81 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCSSSSEEE
T ss_pred             cCcEEcccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhcccccCCCEEE
Confidence            478899999999866 7789999999999999999999999999999976  2223444444455567889999999999


Q ss_pred             EEeCCe--EeEEeeCCCCHHHHHHHHHhHhC
Q 015368          133 LFVAGV--RQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       133 ~~~~g~--~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      +|.+|+  ....|.|.++.+.|.+||+++..
T Consensus        82 ~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~~  112 (116)
T d2djja1          82 LYPAGAKGQPVTYSGSRTVEDLIKFIAENGK  112 (116)
T ss_dssp             EECSSCTTSCCCCCCCSCHHHHHHHHHHTSS
T ss_pred             EEECCccCceEEecCCCCHHHHHHHHHHccC
Confidence            998774  34578999999999999998764

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.83  E-value=2.1e-21  Score=147.57  Aligned_cols=104  Identities=8%  Similarity=0.132  Sum_probs=81.3

Q ss_pred             CcEEcChhhHHHHHcC--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcccHhHHHHcCCCcCcEEEE
Q 015368           57 DVVSLNGKNFSEFMGK--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~  133 (408)
                      ....++..+++..+..  ++++++.|||+||++|+.+.|.+.++++++.+ ++.++.||++++++++++|||+++||+++
T Consensus        12 g~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~~l~~~~~V~~~Pt~~~   91 (119)
T d2es7a1          12 GWQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLV   91 (119)
T ss_dssp             TCEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEE
T ss_pred             CCceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCHHHHHhcCcCcceEEEE
Confidence            3445778888876643  56899999999999999999999999999987 89999999999999999999999999999


Q ss_pred             EeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          134 FVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       134 ~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      |++|+.+.++.|.++.+++.++|+..+
T Consensus        92 ~~~G~~v~~~~G~~~~~~l~~~i~~lL  118 (119)
T d2es7a1          92 FTDGKLRGALSGIHPWAELLTLMRSIV  118 (119)
T ss_dssp             ESCC----CEESCCCHHHHHHHHHHHH
T ss_pred             EEcCeEEEEeeCCCCHHHHHHHHHHHh
Confidence            999999999999999999999998765

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.83  E-value=3.5e-20  Score=140.81  Aligned_cols=102  Identities=13%  Similarity=0.165  Sum_probs=90.9

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc----HhHHHHcCCCcCcEE
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE----KDLAKEYNILAYPTL  131 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~----~~~~~~~~i~~~Pt~  131 (408)
                      ..+...+.+++.+.+.++++++|+||++||++|+.+.|.+.+++++++..+.++.++...+    .+++++|+|.++||+
T Consensus         9 ~~~~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTl   88 (115)
T d1zmaa1           9 KDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGF   88 (115)
T ss_dssp             TTSEECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEE
T ss_pred             eeeeeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEE
Confidence            4566788899999999999999999999999999999999999999987777776665443    468899999999999


Q ss_pred             EEEeCCeEeEEeeCCCCHHHHHHHHH
Q 015368          132 YLFVAGVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       132 ~~~~~g~~~~~~~g~~~~~~l~~~i~  157 (408)
                      ++|++|+...++.|..+.++|.+||.
T Consensus        89 i~~~~gk~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          89 VHITDGQINVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEETTEEEEECCTTCCHHHHHHHHT
T ss_pred             EEEECCEEEEEEcCCCCHHHHHHHHc
Confidence            99999999999999999999999983

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.82  E-value=1.7e-20  Score=146.36  Aligned_cols=124  Identities=15%  Similarity=0.216  Sum_probs=109.7

Q ss_pred             CCCCceEeeccccccccccCCccEEEEEeeCC-CchHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCC
Q 015368          263 TKHPLVVTLTIHNAQFVFQDPRKQLWLFAPAY-GSDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSG  341 (408)
Q Consensus       263 ~~~p~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  341 (408)
                      ...|+|.++|.+|+..+++.+.|++++|.+.+ +.+++...++++|++|+++   +.|+|+|+.+.   .+.++.||++.
T Consensus         3 ~~lPLv~e~~~~n~~~~~~~~~pl~~lf~~~~~~~~~~~~~~~~vA~~~~~k---i~Fv~vd~~~~---~~~l~~~gl~~   76 (133)
T d2djka1           3 LGSPLIGEIGPETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGV---INFGTIDAKAF---GAHAGNLNLKT   76 (133)
T ss_dssp             CSCCCSEECCHHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTT---GGGTTTTTCCS
T ss_pred             CCCCceeccChhhHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHHHHHhcCc---eEEEEEeHHHh---HHHHHHhcCCc
Confidence            35799999999999999999999999998765 4788999999999999999   99999997753   36789999998


Q ss_pred             CCCcEEEEEcc-CCccccC--CCCCChHHHHHHHHHHhcCcc--ccccccCchhhh
Q 015368          342 NAPRVIAYSAR-DAKKYVL--NGELTLSSIKSFGEEFLEDKL--LNQSDQISETIL  392 (408)
Q Consensus       342 ~~~p~i~i~~~-~~~~y~~--~~~~~~~~i~~Fi~~~~~gk~--~~kse~iP~~~~  392 (408)
                      ...|.+++.+. .+.+|.+  ++.++.++|.+|++++++||+  ++||||||++++
T Consensus        77 ~~~P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl~p~~kSe~iPe~~d  132 (133)
T d2djka1          77 DKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQE  132 (133)
T ss_dssp             SSSSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCCCCSSCCCCCCTTSC
T ss_pred             ccCCcEEEEEcCCCceecCCccccCCHHHHHHHHHHHHcCCCCcccccCCCCCCCC
Confidence            88999999987 6677776  458999999999999999999  999999999853

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.81  E-value=4.2e-21  Score=137.67  Aligned_cols=84  Identities=15%  Similarity=0.293  Sum_probs=77.4

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHH
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI  152 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l  152 (408)
                      +|+.+++|||+||+||+.+.|.++++++.+++.+.+..+|++++++++++|+|+++||++++++|+    +.|..+.++|
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~~~~V~~~Pt~~i~~~g~----~~G~~~~~~l   77 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVINGDVE----FIGAPTKEAL   77 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEETTEEE----CCSSSSSHHH
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccccccccccccccccCCceEeeEEEEECCcE----EECCCCHHHH
Confidence            478899999999999999999999999999888999999999999999999999999998877763    6799999999


Q ss_pred             HHHHHhHh
Q 015368          153 SAWVREKM  160 (408)
Q Consensus       153 ~~~i~~~~  160 (408)
                      .++|++++
T Consensus        78 ~~~i~~~L   85 (85)
T d1fo5a_          78 VEAIKKRL   85 (85)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999864

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.4e-20  Score=144.49  Aligned_cols=103  Identities=23%  Similarity=0.422  Sum_probs=89.1

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--C-----cEEEEEeCcccHhHHHHcC--CC
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--E-----ADLVMVDAYLEKDLAKEYN--IL  126 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~-----v~~~~v~~~~~~~~~~~~~--i~  126 (408)
                      ..+++||+++|++.+.+++.+||+||+|||.+|+.  |.|+++++.+.+  +     |.++.+||++++++|.+++  |+
T Consensus         4 ~~~v~L~~~nFd~~i~~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~   81 (122)
T d1g7ea_           4 KGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE   81 (122)
T ss_dssp             SSSCSCSHHHHHHHGGGSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSS
T ss_pred             CceEECCHHhHHHHHhhCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccccc
Confidence            46889999999999999999999999999988864  889999999876  3     4555668888999999865  78


Q ss_pred             cCcEEEEEeCCe--EeEEeeCCCCHHHHHHHHHhHh
Q 015368          127 AYPTLYLFVAGV--RQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       127 ~~Pt~~~~~~g~--~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      ++||+++|++|+  ....|.|.++.++|.+||+++.
T Consensus        82 ~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          82 SYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             SCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTTS
T ss_pred             CCCeEEEEecCcccCceecCCCCCHHHHHHHHHhcc
Confidence            999999999884  3568999999999999999873

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.78  E-value=5.2e-20  Score=131.53  Aligned_cols=81  Identities=21%  Similarity=0.412  Sum_probs=73.5

Q ss_pred             EEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHH
Q 015368           76 VMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAW  155 (408)
Q Consensus        76 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~  155 (408)
                      .++.|||+||+||+++.|.|+++++++++++.++.+|++++++++++|||.++||+++  +|+  .++.|..+.+.|.++
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~~--~~~--~~~~G~~~~~~l~~~   79 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGV--VRFVGAPSREELFEA   79 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTT--EEEECSSCCHHHHHH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhHHhcCceEeCEEEE--CCc--EEEEcCCCHHHHHHH
Confidence            4566999999999999999999999999899999999999999999999999999876  443  257899999999999


Q ss_pred             HHhHh
Q 015368          156 VREKM  160 (408)
Q Consensus       156 i~~~~  160 (408)
                      |++.+
T Consensus        80 i~~~l   84 (85)
T d1nhoa_          80 INDEM   84 (85)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            99875

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.7e-19  Score=133.40  Aligned_cols=99  Identities=13%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             cEEcChhhHHHHHc--CCCcEEEEEecC-------CChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-------ccHhHHH
Q 015368           58 VVSLNGKNFSEFMG--KNRNVMVMFYAN-------WCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-------LEKDLAK  121 (408)
Q Consensus        58 ~~~l~~~~~~~~~~--~~~~~~v~f~a~-------wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-------~~~~~~~  121 (408)
                      +...+.++|.+.+.  ++++++|+|||+       ||+||+++.|.++++++.+++++.|+.||++       .+..+++
T Consensus         4 i~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~   83 (119)
T d1woua_           4 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRK   83 (119)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHH
T ss_pred             EEeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHH
Confidence            34456788888873  567999999995       9999999999999999999989999999984       4567899


Q ss_pred             HcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHH
Q 015368          122 EYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       122 ~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~  157 (408)
                      +|+|.++||+++|++|+.+....+ .+.+.+..+++
T Consensus        84 ~~~V~~iPT~i~~~~g~~l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          84 NLKVTAVPTLLKYGTPQKLVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HHCCCSSSEEEETTSSCEEEGGGG-GCHHHHHHHHH
T ss_pred             hCCeEEEEEEEEEECCeEEeeeec-CCHHHHHHHhc
Confidence            999999999999998876665544 45666666664

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=9.4e-18  Score=127.86  Aligned_cols=95  Identities=24%  Similarity=0.424  Sum_probs=76.4

Q ss_pred             hhhHHHHH--cCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCc----ccHhHHHHcCCCcCcEEEE
Q 015368           63 GKNFSEFM--GKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAY----LEKDLAKEYNILAYPTLYL  133 (408)
Q Consensus        63 ~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~----~~~~~~~~~~i~~~Pt~~~  133 (408)
                      .++++..+  .++|+++|+|||+||++|+.+.|.+   .++.+.++ ++.+..++++    .+.+++++|+|.++||+++
T Consensus        10 ~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~   88 (117)
T d2fwha1          10 VDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKHLNVLGLPTILF   88 (117)
T ss_dssp             HHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEE
T ss_pred             HHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc-ceEEEecccccchhHHHHHHhhhehhhceEEEE
Confidence            34555444  4689999999999999999999998   44555444 6777777764    3567899999999999999


Q ss_pred             Ee-CCeEe--EEeeCCCCHHHHHHHHHh
Q 015368          134 FV-AGVRQ--FQFFGERTRDVISAWVRE  158 (408)
Q Consensus       134 ~~-~g~~~--~~~~g~~~~~~l~~~i~~  158 (408)
                      |+ +|+.+  .++.|.++++++.++|++
T Consensus        89 ~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          89 FDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             ECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             EeCCCcEEecccccccCCHHHHHHHHhc
Confidence            97 88765  367899999999999976

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.73  E-value=1.9e-17  Score=120.62  Aligned_cols=81  Identities=16%  Similarity=0.156  Sum_probs=72.0

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHH
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV  151 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~  151 (408)
                      ++...++.||++||+||+.+.|.++++++.+. ++.+..||++++++++++|+|+++||+++  +|+.+  +.|.++.++
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~-~i~~~~vd~~~~~~l~~~~~I~~vPt~~~--ng~~~--~~G~~~~~~   88 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-RIKHTAIDGGTFQNEITERNVMGVPAVFV--NGKEF--GQGRMTLTE   88 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-TEEEEEEETTTCHHHHHHTTCCSSSEEEE--TTEEE--EESCCCHHH
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHhCC-ceEEEEEecccchHHHhhcccccccEEEE--CCEEE--EecCCCHHH
Confidence            35567888999999999999999999998765 79999999999999999999999999854  88654  789999999


Q ss_pred             HHHHHH
Q 015368          152 ISAWVR  157 (408)
Q Consensus       152 l~~~i~  157 (408)
                      |.++|.
T Consensus        89 l~~~le   94 (96)
T d1hyua4          89 IVAKVD   94 (96)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            998874

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1e-17  Score=131.25  Aligned_cols=89  Identities=13%  Similarity=0.257  Sum_probs=73.7

Q ss_pred             HHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc-----------------------ccHhHHHHcCC
Q 015368           69 FMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY-----------------------LEKDLAKEYNI  125 (408)
Q Consensus        69 ~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~-----------------------~~~~~~~~~~i  125 (408)
                      .+.+||+++|+|||+||++|++++|.++++++.   ++.++.++.+                       .+..+++.|++
T Consensus        16 ~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~---~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v   92 (136)
T d1z5ye1          16 VLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV   92 (136)
T ss_dssp             HHHSSSCEEEEEECTTCHHHHHHHHHHHHHHHT---TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTC
T ss_pred             HHcCCCEEEEEEEcCcCCCcCccccchhhhhhh---hhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhccc
Confidence            345799999999999999999999999998764   4555555543                       23457899999


Q ss_pred             CcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          126 LAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       126 ~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      .++|++++++ +|+++.++.|..+.+.+.+.|++.+
T Consensus        93 ~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll  128 (136)
T d1z5ye1          93 YGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLW  128 (136)
T ss_dssp             CSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHH
T ss_pred             CCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHH
Confidence            9999999998 9999999999999998888777654

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.70  E-value=3.5e-17  Score=129.47  Aligned_cols=102  Identities=22%  Similarity=0.287  Sum_probs=85.6

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCc----------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAY----------------------  114 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~----------------------  114 (408)
                      +...+++.++....++|+++|.|||+||++|+.++|.+.+++++++. ++.++.|..+                      
T Consensus         8 l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~   87 (143)
T d2fy6a1           8 LKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPK   87 (143)
T ss_dssp             CEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTT
T ss_pred             eECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcc
Confidence            44555555554456789999999999999999999999999999876 7888777753                      


Q ss_pred             ------ccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          115 ------LEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       115 ------~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                            .+.++++.|++.++|++++++ +|+++.++.|..+.+++.+++++.
T Consensus        88 ~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1          88 LPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             SCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             cccccccchHHHHHcCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence                  234678999999999999997 999999999999999999999754

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=1.8e-16  Score=125.14  Aligned_cols=110  Identities=17%  Similarity=0.256  Sum_probs=89.0

Q ss_pred             CCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc------------
Q 015368           48 HTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL------------  115 (408)
Q Consensus        48 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~------------  115 (408)
                      .++|... .....++++.......++|+++|+||++||++|++++|.+.++++.+++++.++.|+++.            
T Consensus         5 ~~aP~~~-~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~   83 (143)
T d2b5xa1           5 QPMPELT-GEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKE   83 (143)
T ss_dssp             CBCCCCC-CCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHH
T ss_pred             CcCCCCc-CCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhh
Confidence            3455442 122334666666666788999999999999999999999999999999888998887632            


Q ss_pred             ---------------cHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHh
Q 015368          116 ---------------EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       116 ---------------~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                                     +..+++.|++.++|++++++ +|+++.++.|..+.+.+.+.|++
T Consensus        84 ~~~~~~~~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1          84 TAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             HHHHTTCCSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             HHHhhccCccccccCccchHHHcCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence                           23477889999999999997 99888999999999999988875

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=1.1e-16  Score=125.02  Aligned_cols=100  Identities=18%  Similarity=0.248  Sum_probs=79.5

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc----------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----------------------  115 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----------------------  115 (408)
                      +.+++++.++..-.+||+++|+|||+||++|++++|.+.+++++++ ++.++.|+.++                      
T Consensus        10 ~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~-~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D   88 (134)
T d1zzoa1          10 AKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLAD   88 (134)
T ss_dssp             EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEEC
T ss_pred             EEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc-ccccccccccccchhHHHHHHhcCCcceeEEee
Confidence            4455555554333368999999999999999999999999999987 46666665432                      


Q ss_pred             -cHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhH
Q 015368          116 -EKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVREK  159 (408)
Q Consensus       116 -~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~  159 (408)
                       +..+.+.||+.++|++++++ +|++ ..+.|..+.++|.+.|++.
T Consensus        89 ~~~~~~~~~~v~~~P~~~iiD~~G~i-~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          89 TDGSVWANFGVTQQPAYAFVDPHGNV-DVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             TTCHHHHHTTCCSSSEEEEECTTCCE-EEEESCCCHHHHHHHHHHH
T ss_pred             ccchHHHhcCCCccCeEEEECCCCeE-EEEECCCCHHHHHHHHHhh
Confidence             34678999999999999998 8854 5578999999999998764

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.63  E-value=2.7e-16  Score=124.26  Aligned_cols=87  Identities=20%  Similarity=0.335  Sum_probs=73.5

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC-----------------------cccHhHHHHcCCCcC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA-----------------------YLEKDLAKEYNILAY  128 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~-----------------------~~~~~~~~~~~i~~~  128 (408)
                      +||+++|+|||+||++|+.++|.+.++.+.++  +.+..|+.                       +.+..+.+.|++.++
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR--FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  107 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT--SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccC--ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcccc
Confidence            68999999999999999999999999887764  44444443                       234568899999999


Q ss_pred             cEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          129 PTLYLFV-AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       129 Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      |++++++ +|+++.++.|..+.+++.+.|++.+
T Consensus       108 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~~l  140 (144)
T d1knga_         108 PETFVVGREGTIVYKLVGPITPDNLRSVLLPQM  140 (144)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHHHH
T ss_pred             ceEEEEcCCCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            9999998 9999999999999999988887654

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=1.4e-15  Score=119.09  Aligned_cols=99  Identities=24%  Similarity=0.368  Sum_probs=81.6

Q ss_pred             EEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc---------------------
Q 015368           59 VSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE---------------------  116 (408)
Q Consensus        59 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~---------------------  116 (408)
                      ..+++++++..-.++++++|.||++||++|+.++|.+.++.+++.+ ++.++.|+++++                     
T Consensus        11 ~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~   90 (137)
T d1st9a_          11 EDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDT   90 (137)
T ss_dssp             ECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEET
T ss_pred             ECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccc
Confidence            3444444432223788999999999999999999999999999877 799999887543                     


Q ss_pred             -HhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHH
Q 015368          117 -KDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       117 -~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~  157 (408)
                       ..+++.|++.++|++++++ +|+++.++.|..+.+.+.+.++
T Consensus        91 ~~~~~~~~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~  133 (137)
T d1st9a_          91 DRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMN  133 (137)
T ss_dssp             TSHHHHHTTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHH
T ss_pred             cchhhhhhhccccceEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence             3577889999999999998 9999999999999998888774

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.60  E-value=1.2e-15  Score=118.91  Aligned_cols=100  Identities=18%  Similarity=0.344  Sum_probs=79.5

Q ss_pred             cEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc----------------------
Q 015368           58 VVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL----------------------  115 (408)
Q Consensus        58 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~----------------------  115 (408)
                      +..++++.++..-.++|+++|.|||+||++|+.++|.+++++++++ ++.++.|+.++                      
T Consensus         9 ~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~   87 (134)
T d1lu4a_           9 ATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDA   87 (134)
T ss_dssp             EEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECT
T ss_pred             eECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc-cccccccccccchhhhhhhhhhhccccceeeCc
Confidence            4455555555333468999999999999999999999999999876 68888888754                      


Q ss_pred             cHhHHHHcCCCcCcEEEEEe-CCeEeE--EeeCCCCHHHHHHHHHh
Q 015368          116 EKDLAKEYNILAYPTLYLFV-AGVRQF--QFFGERTRDVISAWVRE  158 (408)
Q Consensus       116 ~~~~~~~~~i~~~Pt~~~~~-~g~~~~--~~~g~~~~~~l~~~i~~  158 (408)
                      +..+++.|++.++|++++++ +|++..  +..|..+.+++.+.|.+
T Consensus        88 ~~~~~~~~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~  133 (134)
T d1lu4a_          88 DGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAA  133 (134)
T ss_dssp             TSHHHHHTTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHH
T ss_pred             hHHHHHHcCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHc
Confidence            24578899999999999998 886543  44678899999888764

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.56  E-value=6.6e-15  Score=115.72  Aligned_cols=70  Identities=19%  Similarity=0.279  Sum_probs=60.2

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccH------------------------hHHHHcC
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEK------------------------DLAKEYN  124 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~------------------------~~~~~~~  124 (408)
                      .++|+++|+|||+||+||++++|.+.++++++++  ++.++.|+.|++.                        .+++.|+
T Consensus        26 l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~  105 (144)
T d1i5ga_          26 LAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD  105 (144)
T ss_dssp             GTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT
T ss_pred             cCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCC
Confidence            3789999999999999999999999999999976  6888999887532                        3678899


Q ss_pred             CCcCcEEEEEe-C-CeEe
Q 015368          125 ILAYPTLYLFV-A-GVRQ  140 (408)
Q Consensus       125 i~~~Pt~~~~~-~-g~~~  140 (408)
                      |+++|++++++ + |+++
T Consensus       106 v~~iPt~~lid~~~G~vi  123 (144)
T d1i5ga_         106 VKSIPTLVGVEADSGNII  123 (144)
T ss_dssp             CCSSSEEEEEETTTCCEE
T ss_pred             CCCcCEEEEEeCCCCEEE
Confidence            99999999998 5 6554

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=8.6e-15  Score=120.25  Aligned_cols=96  Identities=21%  Similarity=0.322  Sum_probs=73.6

Q ss_pred             CCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc------------
Q 015368           47 NHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY------------  114 (408)
Q Consensus        47 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~------------  114 (408)
                      |..+|.+   .+.+++++.++..-.++|+++|.|||+||++|++++|.+.+++++|++++.++.|+..            
T Consensus         9 G~~aPdF---~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~   85 (187)
T d2cvba1           9 ESPLIDA---ELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEK   85 (187)
T ss_dssp             TCBCCCC---EEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHH
T ss_pred             CCccCcc---EeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHH
Confidence            3344543   4455566555433346899999999999999999999999999999988888888742            


Q ss_pred             -----------------ccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCC
Q 015368          115 -----------------LEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGER  147 (408)
Q Consensus       115 -----------------~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~  147 (408)
                                       .+..++++|++.++|++++++ +|++  .|.|..
T Consensus        86 ~~~~~~~~~~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i--~y~G~i  134 (187)
T d2cvba1          86 MAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEVFLFDERRLL--RYHGRV  134 (187)
T ss_dssp             HHHHHHHHTCCSCEEECSSSHHHHHTTCCEESEEEEECTTCBE--EEEECS
T ss_pred             HHHHHHHhCCcceeeechhhhhcccccccceeeEEEEcCCCeE--EEEeee
Confidence                             234678999999999999999 7855  455643

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-14  Score=107.84  Aligned_cols=109  Identities=20%  Similarity=0.392  Sum_probs=100.2

Q ss_pred             cccccChhHHHHHhccCCeEEEEEecCCCCcCHHHHHHHhccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCCc
Q 015368          164 TYSITTTDEAERILTVESKLVLGFLHDLEGMESEELAAASKLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAGK  243 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~~~~~~a~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~~  243 (408)
                      .+.|.+.++++.+++.++.++|+||.+..+..++.|..+|+...++.|+++.+.+++++++++    .|+|++||+.+..
T Consensus         2 a~~l~~~~~~e~f~~~~~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~~t~~~~v~~~~~v~----~~~Ivl~k~~de~   77 (110)
T d1bjxa_           2 ATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLD----KDGVVLFKKFDEG   77 (110)
T ss_dssp             EEECCSHHHHHHHHHHSSEEEEEECTTTTSHHHHHHHHHHHHCSSSCEEEECCSHHHHHTTCS----SCEEEEEESSSSS
T ss_pred             ceEcCCHHHHHHHhccCCeEEEEEEcCCCchHHHHHHHHHHhCcCceEEEECCHHHHHHcCCC----CCeEEEeccCCcc
Confidence            357889999999999999999999999889999999999955578999999999999999998    4999999998888


Q ss_pred             ccccCCcCCHHHHHHHHhcCCCCceEeeccccc
Q 015368          244 ATPFRHQFTRLAIANFVTHTKHPLVVTLTIHNA  276 (408)
Q Consensus       244 ~~~y~g~~~~~~i~~fi~~~~~p~v~~lt~~~~  276 (408)
                      ...|.|+++.++|.+||..++.|+|.++|.+|.
T Consensus        78 ~~~~~~~~~~~~l~~fi~~~~~PlV~e~~~e~A  110 (110)
T d1bjxa_          78 RNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTA  110 (110)
T ss_dssp             BCCCCSCCCHHHHHHHHHHHSSCCCSSCCCTTC
T ss_pred             ccccCCCCCHHHHHHHHHHcCcCcEEecCCCCC
Confidence            889999999999999999999999999998873

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.5e-14  Score=121.28  Aligned_cols=102  Identities=16%  Similarity=0.185  Sum_probs=85.3

Q ss_pred             CCcEEcC-hhhHHHHHc-C--CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEE
Q 015368           56 KDVVSLN-GKNFSEFMG-K--NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTL  131 (408)
Q Consensus        56 ~~~~~l~-~~~~~~~~~-~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~  131 (408)
                      ..+..++ +++|...+. .  +.+|+|.||++||++|+.+.|.+..+++.|. .+.|+.||++..+ +..+|++.++||+
T Consensus        99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~-~vkF~ki~~~~~~-~~~~~~i~~lPtl  176 (217)
T d2trcp_          99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRASNTG-AGDRFSSDVLPTL  176 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEHHHHT-CSTTSCGGGCSEE
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcc-cceEEEEccccch-hHHhCCCCCCCeE
Confidence            5788885 678887773 2  3479999999999999999999999999987 6999999988764 6689999999999


Q ss_pred             EEEeCCeEeEEeeCC-------CCHHHHHHHHHhH
Q 015368          132 YLFVAGVRQFQFFGE-------RTRDVISAWVREK  159 (408)
Q Consensus       132 ~~~~~g~~~~~~~g~-------~~~~~l~~~i~~~  159 (408)
                      ++|++|+.+.++.|.       .+.++|..+|.++
T Consensus       177 ~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         177 LVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             EEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             EEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            999999988888773       4567777776654

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.50  E-value=2.5e-14  Score=112.66  Aligned_cols=70  Identities=20%  Similarity=0.328  Sum_probs=60.3

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCccc------------------------HhHHHHcCC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLE------------------------KDLAKEYNI  125 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~------------------------~~~~~~~~i  125 (408)
                      +||+++|+|||+||++|++++|.+.++++++..  ++.++.|+.++.                        ..+.+.|+|
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            689999999999999999999999999999954  788999988643                        236788999


Q ss_pred             CcCcEEEEEe-C-CeEeE
Q 015368          126 LAYPTLYLFV-A-GVRQF  141 (408)
Q Consensus       126 ~~~Pt~~~~~-~-g~~~~  141 (408)
                      +++|++++++ + |+++.
T Consensus       107 ~~~Pt~~lID~~~G~Ii~  124 (144)
T d1o73a_         107 ESIPTLITINADTGAIIG  124 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CcCCEEEEEECCCCEEEe
Confidence            9999999998 6 65544

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=1.2e-14  Score=110.83  Aligned_cols=106  Identities=17%  Similarity=0.124  Sum_probs=91.9

Q ss_pred             eEeeccccccccccCCccEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcE
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV  346 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~  346 (408)
                      +.+++++|+..++..+.|++++|++.++ .+++...++++|++|+++   +.|+++|.++.   .+.++.||++. ..|.
T Consensus         2 ~gei~~~~~~~y~~~~~Pl~~~f~~~~~~~~~~~~~~~~vAk~fkgk---i~Fv~~D~~~~---~~~l~~fgl~e-~~P~   74 (125)
T d2b5ea3           2 FGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGL---MNFVSIDARKF---GRHAGNLNMKE-QFPL   74 (125)
T ss_dssp             SCBCCHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTT---CEEEEEEHHHH---TTHHHHTTCCS-CSSE
T ss_pred             CCccCHHHHHHHHhcCCCEEEEEeCChHHHHHHHHHHHHHHHHhcCe---eEEEEEchHHh---HHHHHHcCCCc-cCCc
Confidence            4678999999999999999999887643 778999999999999999   99999998653   46779999975 5788


Q ss_pred             EEEEcc-CCccccCC-------------CCCChHHHHHHHHHHhcCcc
Q 015368          347 IAYSAR-DAKKYVLN-------------GELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       347 i~i~~~-~~~~y~~~-------------~~~~~~~i~~Fi~~~~~gk~  380 (408)
                      +++.+. ++.+|.|.             ++++.++|.+|++++++||+
T Consensus        75 ~~i~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKl  122 (125)
T d2b5ea3          75 FAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDA  122 (125)
T ss_dssp             EEEEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCC
T ss_pred             EEEEecccCcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCc
Confidence            888877 78888874             57999999999999999987

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1e-13  Score=107.79  Aligned_cols=80  Identities=18%  Similarity=0.215  Sum_probs=63.1

Q ss_pred             HHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHh--cCCcEEEEEeCcccHhHHHHc-CCCcCcEEEEEe-CCeEeE
Q 015368           66 FSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKML--KGEADLVMVDAYLEKDLAKEY-NILAYPTLYLFV-AGVRQF  141 (408)
Q Consensus        66 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~--~~~v~~~~v~~~~~~~~~~~~-~i~~~Pt~~~~~-~g~~~~  141 (408)
                      +.....++|+++|+|||+||++|+.+.|.+.+..+..  ..++..+.||+++....+..+ ...++|++++++ +|+...
T Consensus        18 l~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~   97 (135)
T d1sena_          18 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHP   97 (135)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCT
T ss_pred             HHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCHHHHHHHhhcccceeEEEECCCCeEEE
Confidence            4445578999999999999999999999986654432  348999999998887776644 455689999998 887766


Q ss_pred             EeeC
Q 015368          142 QFFG  145 (408)
Q Consensus       142 ~~~g  145 (408)
                      .+.|
T Consensus        98 ~~~g  101 (135)
T d1sena_          98 EIIN  101 (135)
T ss_dssp             TCCC
T ss_pred             EecC
Confidence            6665

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.42  E-value=4.6e-13  Score=109.09  Aligned_cols=105  Identities=19%  Similarity=0.251  Sum_probs=80.3

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc-H-----------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE-K-----------------  117 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~-~-----------------  117 (408)
                      .+.+++++.++..-.++|+++|+||++||++|+.+.+.+.++++.+.+ ++.++.|+++.. .                 
T Consensus        40 ~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~  119 (176)
T d1jfua_          40 AFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGY  119 (176)
T ss_dssp             EEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCC
T ss_pred             EEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceee
Confidence            455666666653334789999999999999999999999999998876 677777776421 1                 


Q ss_pred             ----------hHHHHcCCCcCcEEEEEe-CCeEeEEeeCCC--CHHHHHHHHHhHhC
Q 015368          118 ----------DLAKEYNILAYPTLYLFV-AGVRQFQFFGER--TRDVISAWVREKMT  161 (408)
Q Consensus       118 ----------~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~--~~~~l~~~i~~~~~  161 (408)
                                .+...+++.++|++++++ +|+++.++.|..  +.+++.++|+..++
T Consensus       120 ~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~~  176 (176)
T d1jfua_         120 FNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG  176 (176)
T ss_dssp             EECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHHC
T ss_pred             eecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhcC
Confidence                      122345678899999998 998888999964  55788888887654

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.40  E-value=3.5e-13  Score=106.10  Aligned_cols=80  Identities=19%  Similarity=0.248  Sum_probs=63.6

Q ss_pred             cChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCccc----------------------
Q 015368           61 LNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLE----------------------  116 (408)
Q Consensus        61 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~----------------------  116 (408)
                      .++++++..-.+||+++|+|||+||++|+.++|.+.++++++..  ++.++.|+.+++                      
T Consensus        14 ~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d   93 (144)
T d1o8xa_          14 RGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSE   93 (144)
T ss_dssp             ETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHH
T ss_pred             CCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeeccc
Confidence            33444433334789999999999999999999999999999965  688888887642                      


Q ss_pred             --HhHHHHcCCCcCcEEEEEe-C-CeEe
Q 015368          117 --KDLAKEYNILAYPTLYLFV-A-GVRQ  140 (408)
Q Consensus       117 --~~~~~~~~i~~~Pt~~~~~-~-g~~~  140 (408)
                        ..+.+.|+|+++|++++++ + |+++
T Consensus        94 ~~~~l~~~y~v~~~Pt~~liD~~~G~Vi  121 (144)
T d1o8xa_          94 AVQKLSKHFNVESIPTLIGVDADSGDVV  121 (144)
T ss_dssp             HHHHHHHHTTCCSSSEEEEEETTTCCEE
T ss_pred             chhhHHHHcCCCcCCEEEEEeCCCCEEE
Confidence              3578899999999999999 6 6543

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.3e-12  Score=102.22  Aligned_cols=93  Identities=11%  Similarity=0.043  Sum_probs=75.3

Q ss_pred             HHHcCCCcEEEEEecCCChhHHhhhHHH---HHHHHHhcCCcEEEEEeCccc--HhHHHHcCCCcCcEEEEEe--CCeEe
Q 015368           68 EFMGKNRNVMVMFYANWCYWSKKLAPEF---AAAAKMLKGEADLVMVDAYLE--KDLAKEYNILAYPTLYLFV--AGVRQ  140 (408)
Q Consensus        68 ~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~v~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~--~g~~~  140 (408)
                      ....++|+++|+||++||++|+.+....   .++.+.++.++.++.||.+..  ..++++|++.++|++++++  .|+.+
T Consensus        37 ~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v  116 (147)
T d2dlxa1          37 CGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKL  116 (147)
T ss_dssp             HHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCC
T ss_pred             HHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEe
Confidence            4446789999999999999999997754   556666666899999998765  7789999999999999997  57555


Q ss_pred             EEeeCCCCHHHHHHHHHhHhC
Q 015368          141 FQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       141 ~~~~g~~~~~~l~~~i~~~~~  161 (408)
                       +..|.++.+++...+++.+.
T Consensus       117 -~~~~~~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1         117 -VEWHQLDVSSFLDQVTGFLG  136 (147)
T ss_dssp             -EEESSCCHHHHHHHHHHHHH
T ss_pred             -cccCCCCHHHHHHHHHHHHh
Confidence             45567899998888877764

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.35  E-value=2e-12  Score=93.22  Aligned_cols=96  Identities=15%  Similarity=0.248  Sum_probs=87.3

Q ss_pred             ccccChhHHHHHhc-cCCeEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCCC
Q 015368          165 YSITTTDEAERILT-VESKLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEAG  242 (408)
Q Consensus       165 ~~i~~~~~~~~~~~-~~~~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~~  242 (408)
                      ..|++.++++.|++ .++..+|+||.+..++.+..|..+| .++.++.|+++++.+++++++++    .|++++|++.+.
T Consensus         2 ~~i~~~~e~~~F~~~~d~v~VvGfF~~~~~~~~~~F~~~A~~~rd~~~F~~t~d~~va~~~~v~----~~~vvlfr~fde   77 (102)
T d1a8ya2           2 ELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDSKVAKKLTLK----LNEIDFYEAFME   77 (102)
T ss_dssp             EEECSHHHHHHHTTCCSSCEEEEECSSTTCHHHHHHHHHHHHHTTTSCEEEECCHHHHHHHCCC----TTCEEEECTTCS
T ss_pred             eeecCHHHHHHHhccCCCEEEEEEECCCCcHHHHHHHHHHHHcCCCceEEEECCHHHHHHcCCC----CCCEEEeeecCC
Confidence            45789999999998 5678999999988888999999988 67899999999999999999997    499999999999


Q ss_pred             cccccCCc-CCHHHHHHHHhcCC
Q 015368          243 KATPFRHQ-FTRLAIANFVTHTK  264 (408)
Q Consensus       243 ~~~~y~g~-~~~~~i~~fi~~~~  264 (408)
                      ....|+|. ++.++|.+||..|+
T Consensus        78 ~~~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          78 EPVTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             SEEECSSSSCCHHHHHHHHHHTC
T ss_pred             CceecCCCCCCHHHHHHHHHHhc
Confidence            99999996 89999999999886

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=9.9e-13  Score=95.66  Aligned_cols=84  Identities=11%  Similarity=0.084  Sum_probs=71.7

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHH
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV  151 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~  151 (408)
                      ..-++++.||++||++|+++.|.++++...+.  ..++.+|.++++++.++|+++ +|++++  +|+..  ..|..+.+.
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--~~~v~vd~~~~~~l~~~y~~~-VPvl~i--dg~~~--~~g~~d~~~   86 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--LQEVDITLPENSTWYERYKFD-IPVFHL--NGQFL--MMHRVNTSK   86 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--EEEEETTSSTTHHHHHHSSSS-CSEEEE--SSSEE--EESSCCHHH
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc--eEEEecccccCHHHHHHhccc-CCceee--cCceE--EeCCCCHHH
Confidence            45689999999999999999999999988775  678899999999999999998 997654  67554  458899999


Q ss_pred             HHHHHHhHhCC
Q 015368          152 ISAWVREKMTL  162 (408)
Q Consensus       152 l~~~i~~~~~~  162 (408)
                      |.++|++..++
T Consensus        87 L~~~L~~l~~~   97 (100)
T d1wjka_          87 LEKQLRKLSGP   97 (100)
T ss_dssp             HHHHHHSSSCS
T ss_pred             HHHHHHHHhcC
Confidence            99999876654

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.16  E-value=4.1e-11  Score=96.17  Aligned_cols=85  Identities=12%  Similarity=0.121  Sum_probs=67.0

Q ss_pred             cChhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHc---CCCcCcEEEEEe-
Q 015368           61 LNGKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEY---NILAYPTLYLFV-  135 (408)
Q Consensus        61 l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~---~i~~~Pt~~~~~-  135 (408)
                      ++....+.+.. +++.+++.||++||++|+++.|.+.++++.++ ++.+..|+.+.+++..++|   +...+|.+++.+ 
T Consensus        41 l~~~~~~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~p~~~~~d~  119 (166)
T d1z6na1          41 LPSALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-NIELAIISKGRAEDDLRQRLALERIAIPLVLVLDE  119 (166)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-TEEEEEECHHHHHHHTTTTTTCSSCCSSEEEEECT
T ss_pred             ccHHHHHHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-CCcEEEEECccCHHHHHHHHHhccccccceeecCc
Confidence            44444444443 57788999999999999999999999999987 7888889999999999988   455688888887 


Q ss_pred             CCeEeEEeeCC
Q 015368          136 AGVRQFQFFGE  146 (408)
Q Consensus       136 ~g~~~~~~~g~  146 (408)
                      ++.....+.+.
T Consensus       120 ~~~~~~~~~~~  130 (166)
T d1z6na1         120 EFNLLGRFVER  130 (166)
T ss_dssp             TCCEEEEEESS
T ss_pred             cchhccccccc
Confidence            55566666553

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.10  E-value=3.3e-10  Score=90.25  Aligned_cols=112  Identities=14%  Similarity=0.246  Sum_probs=81.3

Q ss_pred             CCCCCCccCCCcEEcChhhH--HHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------
Q 015368           47 NHTWPLLYAKDVVSLNGKNF--SEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------  115 (408)
Q Consensus        47 ~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------  115 (408)
                      |..+|++   .+.+.+++.+  .+...++|+++|.|| ++||++|...++.+.++++.+++ ++.++.+..+.       
T Consensus         5 G~~aPdF---~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~   81 (160)
T d2cx4a1           5 GEKAPDF---TLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKF   81 (160)
T ss_dssp             TSBCCCC---EECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHH
T ss_pred             CCCCcCe---EeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhh
Confidence            3445544   2334455544  345567899999999 89999999999999999988877 78888887643       


Q ss_pred             --------------cHhHHHHcCCC----------cCcEEEEEe-CCeEeEEeeC-----CCCHHHHHHHHHhHhC
Q 015368          116 --------------EKDLAKEYNIL----------AYPTLYLFV-AGVRQFQFFG-----ERTRDVISAWVREKMT  161 (408)
Q Consensus       116 --------------~~~~~~~~~i~----------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~l~~~i~~~~~  161 (408)
                                    +..+++.||+.          ..|++++++ +|++...+.+     ..+.+++.+-+++..+
T Consensus        82 ~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l~~  157 (160)
T d2cx4a1          82 KDENRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKIAG  157 (160)
T ss_dssp             HHHHTCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHHHT
T ss_pred             cccceeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHHcc
Confidence                          34577888873          468899998 9987776653     3456777777776654

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=1.1e-09  Score=86.62  Aligned_cols=101  Identities=19%  Similarity=0.223  Sum_probs=73.1

Q ss_pred             CCCCCCCccCCCcEEcChhhHH--HHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-------
Q 015368           46 NNHTWPLLYAKDVVSLNGKNFS--EFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-------  115 (408)
Q Consensus        46 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-------  115 (408)
                      .|..+|.+   .+.+.++++++  ....+++.+++.|| +.||++|...++.+.+.+.+++..+.++.|+.+.       
T Consensus         7 vG~~aP~f---~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f   83 (156)
T d2a4va1           7 IGDPIPDL---SLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKF   83 (156)
T ss_dssp             TTCBCCSC---EEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHH
T ss_pred             CCCCCCCe---EEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhh
Confidence            34455544   34555555444  44455666777777 8999999999999999999998877788888643       


Q ss_pred             --------------cHhHHHHcCCCcCc------EEEEEeCCeEeEEeeCCCCH
Q 015368          116 --------------EKDLAKEYNILAYP------TLYLFVAGVRQFQFFGERTR  149 (408)
Q Consensus       116 --------------~~~~~~~~~i~~~P------t~~~~~~g~~~~~~~g~~~~  149 (408)
                                    +.+++++||+...|      ++++..+|++..++.|....
T Consensus        84 ~~~~~l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~~~~~~~  137 (156)
T d2a4va1          84 QSKQNLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPE  137 (156)
T ss_dssp             HHHHTCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEEESCCHH
T ss_pred             hcccCccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEEEEeCCC
Confidence                          45678889887665      45566799999998876543

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.90  E-value=4.1e-09  Score=84.26  Aligned_cols=86  Identities=19%  Similarity=0.391  Sum_probs=67.7

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      .+|+++|.|| ++||++|..+++.+.+.++++++ ++.++.|+.+.                            +..+++
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~  111 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIAR  111 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHHH
Confidence            6889999999 99999999999999999999988 88889888754                            234677


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHH
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVR  157 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~  157 (408)
                      .|++.      .+|++++++ +|++...+.+.    .+.+++.+.|+
T Consensus       112 ~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~  158 (167)
T d1e2ya_         112 AYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVE  158 (167)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHH
T ss_pred             HcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHH
Confidence            78772      368899998 99776665432    45667666654

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=7.4e-09  Score=77.65  Aligned_cols=100  Identities=17%  Similarity=0.242  Sum_probs=80.1

Q ss_pred             CcccccChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHh-ccC-CceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368          163 GTYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLH-SDVNFYQT---TSADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~-~~~~f~~~---~~~~l~~~~~i~~~~~~p~l  234 (408)
                      .+..+ +.+++++++++++.++|.|+.+||.++   .+.+..++ .+. +.+.|+.+   .+.+++.++++.   ++|++
T Consensus        11 ~v~~l-t~~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l~~~~~v~---~~Pti   86 (119)
T d2b5ea4          11 AVVKL-ATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIP---GFPSL   86 (119)
T ss_dssp             SCEEC-CTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCC---SSSEE
T ss_pred             ccEEc-CHHHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchHHHHHHhccc---cCCeE
Confidence            46666 457789999999999999999999984   44566666 443 46888876   567899999998   69999


Q ss_pred             EEeecCC-CcccccCCcCCHHHHHHHHhcCCCC
Q 015368          235 IFLHLEA-GKATPFRHQFTRLAIANFVTHTKHP  266 (408)
Q Consensus       235 ~~~~~~~-~~~~~y~g~~~~~~i~~fi~~~~~p  266 (408)
                      ++|+++. .....|.|..+.++|.+||++++-|
T Consensus        87 ~~f~~g~~~~~~~y~g~~~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          87 KIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP  119 (119)
T ss_dssp             EEEETTCTTCEEECCSCCSHHHHHHHHHHHTSC
T ss_pred             EEEECCEEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            9998754 3456799999999999999987765

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=6.3e-09  Score=83.34  Aligned_cols=88  Identities=13%  Similarity=0.196  Sum_probs=70.5

Q ss_pred             cCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------------cHhHHHHc
Q 015368           71 GKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEY  123 (408)
Q Consensus        71 ~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~  123 (408)
                      .+||+++|.|| +.||++|...++.+.+.++++++ ++.++.|+.+.                         +.+++++|
T Consensus        42 ~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~y  121 (169)
T d2bmxa1          42 HPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAA  121 (169)
T ss_dssp             STTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHH
T ss_pred             HCCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHc
Confidence            36889999999 99999999999999999999987 78888888753                         34678999


Q ss_pred             CC-----CcCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHh
Q 015368          124 NI-----LAYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVRE  158 (408)
Q Consensus       124 ~i-----~~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~  158 (408)
                      |+     ...|++++++ +|++...+.+    ..+.+++.+.|+.
T Consensus       122 gv~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         122 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             CCCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            98     6789999998 8977554432    2566777777753

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.84  E-value=7.6e-09  Score=76.17  Aligned_cols=103  Identities=17%  Similarity=0.197  Sum_probs=83.6

Q ss_pred             ceEeeccccccc-cccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          267 LVVTLTIHNAQF-VFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       267 ~v~~lt~~~~~~-~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      .+.++|.+++.. +..++.|+++ ++.+|+. |....+.+.++|.++.++   +.|+.+|++.   ++.+++.|++..  
T Consensus         3 ~V~~lt~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~---~~~l~~~~~I~~--   74 (108)
T d1thxa_           3 GVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDP---NPTTVKKYKVEG--   74 (108)
T ss_dssp             SEEECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTT---CHHHHHHTTCCS--
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceecccc---cHHHHHHhcccC--
Confidence            377889999876 5555566665 5567777 999999999999999998   9999999986   458899999954  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .|.++++..+.....+.|..+.++|.+||++.++
T Consensus        75 ~Pt~~~~~~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          75 VPALRLVKGEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            6888888754445567899999999999999875

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.79  E-value=2.4e-08  Score=81.17  Aligned_cols=88  Identities=16%  Similarity=0.253  Sum_probs=71.8

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      .+|++++.|| ++||+.|..+++.|.+++++++. ++.++.|++|.                            +.++++
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~~  111 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMK  111 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHHH
Confidence            5789999999 99999999999999999999987 89999998763                            346889


Q ss_pred             HcCC------CcCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHhH
Q 015368          122 EYNI------LAYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK  159 (408)
Q Consensus       122 ~~~i------~~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~  159 (408)
                      .||+      ..+|++++++ +|.+...+.+    .++.+++.+.|+..
T Consensus       112 ~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~al  160 (194)
T d1uula_         112 SYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  160 (194)
T ss_dssp             HHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHh
Confidence            9998      3478899998 8976665432    36788888877543

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.76  E-value=6.8e-09  Score=75.99  Aligned_cols=101  Identities=19%  Similarity=0.188  Sum_probs=83.9

Q ss_pred             EeeccccccccccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcE
Q 015368          269 VTLTIHNAQFVFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRV  346 (408)
Q Consensus       269 ~~lt~~~~~~~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~  346 (408)
                      ..+|.++|.+..+++.|+++ ++.+|+. |+...+.+.++|.++.++   +.|+.+|++..   +.+++.|++..  .|.
T Consensus         3 i~lt~~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~~---~~~~~~~~V~~--~Pt   74 (105)
T d1nw2a_           3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDEN---PETTSQFGIMS--IPT   74 (105)
T ss_dssp             EEECTTTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTC---HHHHHHTTCCB--SSE
T ss_pred             EEECHHHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCCC---cccHHHCCcce--eeE
Confidence            57899999998888777666 5556776 999999999999999999   99999999874   58899999954  688


Q ss_pred             EEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          347 IAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       347 i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      ++++..+.....+.|..+.+.|.+||++++.
T Consensus        75 ~~~~~~G~~~~~~~G~~~~~~l~~~i~~~L~  105 (105)
T d1nw2a_          75 LILFKGGEPVKQLIGYQPKEQLEAQLADVLQ  105 (105)
T ss_dssp             EEEEETTEEEEEEESCCCHHHHHHHTTTTCC
T ss_pred             EEEEECCEEEEEEECCCCHHHHHHHHHHHhC
Confidence            8888754445568898999999999988763

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.74  E-value=1.9e-08  Score=73.26  Aligned_cols=96  Identities=14%  Similarity=0.189  Sum_probs=76.2

Q ss_pred             cccccChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEe
Q 015368          164 TYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFL  237 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~  237 (408)
                      +..++|.+++++++++++.+++.|+++||+++   .+.+.++++...+..|+.+   .+.++++++++.   +.|++++|
T Consensus         2 v~~i~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~---~~Pt~i~~   78 (103)
T d1syra_           2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENIT---SMPTFKVY   78 (103)
T ss_dssp             CEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCC---SSSEEEEE
T ss_pred             cEEeCCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccceEEEeeccccCcceeeeeeee---cceEEEEE
Confidence            35678999999999999999999999999984   4456677754456677765   566899999999   69999999


Q ss_pred             ecCCCcccccCCcCCHHHHHHHHhcCC
Q 015368          238 HLEAGKATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       238 ~~~~~~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                      +.+. ....+.|. +.+.|.+||+++.
T Consensus        79 k~G~-~v~~~~G~-~~~~l~~~i~k~a  103 (103)
T d1syra_          79 KNGS-SVDTLLGA-NDSALKQLIEKYA  103 (103)
T ss_dssp             ETTE-EEEEEESC-CHHHHHHHHHTTC
T ss_pred             ECCE-EEEEEeCc-CHHHHHHHHHhhC
Confidence            8653 45577784 7899999998863

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.3e-08  Score=79.41  Aligned_cols=90  Identities=9%  Similarity=0.007  Sum_probs=70.4

Q ss_pred             cCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCccc--------Hh---HHH------HcCC-------
Q 015368           71 GKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYLE--------KD---LAK------EYNI-------  125 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~~--------~~---~~~------~~~i-------  125 (408)
                      -+||++||.+||+||++|.+..|.+++++++|++ ++.++.+-|++.        .+   .|+      .|++       
T Consensus        22 ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei~~f~~~~~~~~~~~~~f~~~~k  101 (184)
T d2f8aa1          22 LRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEK  101 (184)
T ss_dssp             GTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCCCSSEEBCC
T ss_pred             cCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhhhhhhhheecccccccccccccee
Confidence            3789999999999999999999999999999987 799999988642        12   232      2221       


Q ss_pred             -----------------------------CcCc-----------------EEEEEe-CCeEeEEeeCCCCHHHHHHHHHh
Q 015368          126 -----------------------------LAYP-----------------TLYLFV-AGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       126 -----------------------------~~~P-----------------t~~~~~-~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                                                   .+.|                 +-++++ +|+++.+|.+..+.++|..-|++
T Consensus       102 i~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~vv~rf~~~~~p~~i~~~Ie~  181 (184)
T d2f8aa1         102 CEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEA  181 (184)
T ss_dssp             CCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHHHH
T ss_pred             eeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCCEEEEECCCCCHHHHHHHHHH
Confidence                                         1122                 557886 99999999988888888888877


Q ss_pred             Hh
Q 015368          159 KM  160 (408)
Q Consensus       159 ~~  160 (408)
                      .+
T Consensus       182 lL  183 (184)
T d2f8aa1         182 LL  183 (184)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.72  E-value=3.7e-08  Score=74.25  Aligned_cols=95  Identities=14%  Similarity=0.211  Sum_probs=73.7

Q ss_pred             CcccccChhHHHHHhccCCeEEEEEecCCCCcC---------HHHHHHHhc-c-CCceeEEEe---cCHhHHhhcCCCCC
Q 015368          163 GTYSITTTDEAERILTVESKLVLGFLHDLEGME---------SEELAAASK-L-HSDVNFYQT---TSADVAEFFHIHPK  228 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~---------~~~~~~~a~-~-~~~~~f~~~---~~~~l~~~~~i~~~  228 (408)
                      .+.++ +.++++.+++.++.++|.||++||+..         ...+..+|+ + ...+.|+.+   .+.+++++++|.  
T Consensus        12 ~V~~L-~~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~~~I~--   88 (124)
T d1a8ya1          12 RVINV-NAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLT--   88 (124)
T ss_dssp             CCEEC-CTTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHTTTCC--
T ss_pred             ccEEC-CHHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhccccc--
Confidence            45666 457789999999999999999999851         122333442 2 334778876   477899999999  


Q ss_pred             CCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          229 SKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       229 ~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                       ++|++++|+.+  ....|+|.++.++|.+||.+.
T Consensus        89 -~yPTi~~f~~g--~~~~y~G~r~~~~l~~fi~~~  120 (124)
T d1a8ya1          89 -EEDSIYVFKED--EVIEYDGEFSADTLVEFLLDV  120 (124)
T ss_dssp             -STTCEEEEESS--SEEECCSCCSHHHHHHHHHHH
T ss_pred             -cCCcEEEeccC--ccEEeeCCCCHHHHHHHHHHh
Confidence             69999999865  678999999999999999763

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.72  E-value=1.7e-08  Score=80.15  Aligned_cols=86  Identities=16%  Similarity=0.268  Sum_probs=66.8

Q ss_pred             CCCcEEEEEecC-CChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------------cHhHHHHcC
Q 015368           72 KNRNVMVMFYAN-WCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN  124 (408)
Q Consensus        72 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~  124 (408)
                      .||+++|.||+. ||++|..+++.+.+.++++++ ++.++.|++|.                         +..++++||
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~yg  109 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhC
Confidence            678999999976 999999999999999999976 89999998864                         235678888


Q ss_pred             CC------cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHH
Q 015368          125 IL------AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVR  157 (408)
Q Consensus       125 i~------~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~  157 (408)
                      +.      ..|++++++ +|.+...+.+.    ++.+++.+-|+
T Consensus       110 v~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lk  153 (166)
T d1we0a1         110 VLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVK  153 (166)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHH
T ss_pred             CCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHH
Confidence            74      467899998 89776655443    34555555443

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.70  E-value=8.8e-08  Score=79.89  Aligned_cols=90  Identities=13%  Similarity=0.148  Sum_probs=72.2

Q ss_pred             HcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc---------------------------cHhHH
Q 015368           70 MGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL---------------------------EKDLA  120 (408)
Q Consensus        70 ~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~---------------------------~~~~~  120 (408)
                      ..+++.+++.|| ++||+.|..+++.+.+.+++++. ++.++.|++|.                           +..++
T Consensus        26 ~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~va  105 (237)
T d2zcta1          26 VSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA  105 (237)
T ss_dssp             HTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHH
T ss_pred             hcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHH
Confidence            357888999998 99999999999999999999977 89999998763                           34688


Q ss_pred             HHcCC-------CcCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHhH
Q 015368          121 KEYNI-------LAYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK  159 (408)
Q Consensus       121 ~~~~i-------~~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~  159 (408)
                      +.||+       ...|++++++ +|++...+.+    .++.+++.+.|+..
T Consensus       106 k~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aL  156 (237)
T d2zcta1         106 RRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  156 (237)
T ss_dssp             HHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHH
Confidence            99998       4689999998 8866544432    35888888887544

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=4.8e-08  Score=71.68  Aligned_cols=103  Identities=17%  Similarity=0.261  Sum_probs=82.4

Q ss_pred             ceEeeccccccc-cccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          267 LVVTLTIHNAQF-VFQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       267 ~v~~lt~~~~~~-~~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      .+.++|.+++.. +..++.++++ ++.+|+. |+.....+.++|.++.++   +.++.+|++.   ++.+++.||+..  
T Consensus         3 ~v~~lt~~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~vd~d~---~~~l~~~~~v~~--   74 (108)
T d2trxa_           3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQ---NPGTAPKYGIRG--   74 (108)
T ss_dssp             TEEECCTTTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTT---CTTHHHHTTCCS--
T ss_pred             CceECCHHHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcc---eeeeeccccc---hhhHHHHhCCCc--
Confidence            367889999876 4455556655 6667887 889999999999999999   9999999876   458899999954  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .|.++++..+.....+.|..+.+.|.+||+..++
T Consensus        75 ~PT~~~~~~G~~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          75 IPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             SSEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             EEEEEEEECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence            6788888654344458899999999999998764

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6e-08  Score=72.69  Aligned_cols=100  Identities=17%  Similarity=0.275  Sum_probs=78.0

Q ss_pred             CcccccChhHHHHHhccCCeEEEEEecCCCCcC---HHHHHHHh-ccC---CceeEEEe---cCHhHHhhcCCCCCCCCC
Q 015368          163 GTYSITTTDEAERILTVESKLVLGFLHDLEGME---SEELAAAS-KLH---SDVNFYQT---TSADVAEFFHIHPKSKRP  232 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~---~~~~f~~~---~~~~l~~~~~i~~~~~~p  232 (408)
                      .+..+ +.+++++.++.++.++|.|+++||.++   .+.+..++ .+.   ..+.++.+   .+..++.++++.   ++|
T Consensus         8 ~V~~l-~~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~---~~P   83 (120)
T d1meka_           8 HVLVL-RKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVR---GYP   83 (120)
T ss_dssp             TEEEC-CTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCC---SSS
T ss_pred             CeEEc-CHHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHHHhCCc---cCC
Confidence            34455 558889999999999999999999874   44566665 332   34666655   456799999999   699


Q ss_pred             eEEEeecCCC-cccccCCcCCHHHHHHHHhcCCCC
Q 015368          233 ALIFLHLEAG-KATPFRHQFTRLAIANFVTHTKHP  266 (408)
Q Consensus       233 ~l~~~~~~~~-~~~~y~g~~~~~~i~~fi~~~~~p  266 (408)
                      ++++|+.++. ....|.|..+.++|.+||+++.-|
T Consensus        84 t~~~~~~G~~~~~~~~~g~~~~~~l~~fi~~~~~p  118 (120)
T d1meka_          84 TIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             EEEEEESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             eEEEEECCeEeeeEEecCCCCHHHHHHHHHHhhCC
Confidence            9999987653 356799999999999999998876

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.66  E-value=2.9e-08  Score=72.81  Aligned_cols=101  Identities=20%  Similarity=0.243  Sum_probs=81.5

Q ss_pred             Eeecccccccc-ccCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCc
Q 015368          269 VTLTIHNAQFV-FQDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPR  345 (408)
Q Consensus       269 ~~lt~~~~~~~-~~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p  345 (408)
                      ..+|.+++... ..++.|+++ ++++|+. |....+.+.+++.++.++   +.|+.+|++..   +.+++.|++..  .|
T Consensus         4 ~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~~---~~l~~~~~V~~--~P   75 (107)
T d1dbya_           4 GAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDES---PNVASEYGIRS--IP   75 (107)
T ss_dssp             EEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTC---HHHHHHHTCCS--SC
T ss_pred             eEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEecccc---hhHHHHhcccc--eE
Confidence            45677888664 445557665 6777877 999999999999999999   99999999864   58899999954  68


Q ss_pred             EEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          346 VIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       346 ~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .++++..+.....+.|..+.++|.+||+++++
T Consensus        76 t~~~~~~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          76 TIMVFKGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             EEEEESSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             EEEEEECCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence            88888755555567898999999999999875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.65  E-value=3.3e-08  Score=72.05  Aligned_cols=101  Identities=14%  Similarity=0.238  Sum_probs=80.5

Q ss_pred             eEeeccccccccc-cCCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVF-QDPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~-~~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~  344 (408)
                      +.++|..++.... .++.|+++ ++++|+. |....+.+.+++.++.++   +.++.+|++.   ++.+++.||+..  .
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~---~~~l~~~~~V~~--~   72 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDE---APGIATQYNIRS--I   72 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTT---CHHHHHHTTCCS--S
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEeccc---chhhhhhcceee--e
Confidence            4678999998755 44557666 5566777 899999999999999999   9999999887   458899999954  6


Q ss_pred             cEEEEEccCCccccCCCCCChHHHHHHHHHHh
Q 015368          345 RVIAYSARDAKKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       345 p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      |.++++..+.....+.|..+.++|.+||++++
T Consensus        73 Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          73 PTVLFFKNGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             SEEEEEETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             eEEEEEEcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence            78888864434445788889999999999874

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.65  E-value=3.5e-08  Score=77.47  Aligned_cols=84  Identities=10%  Similarity=0.196  Sum_probs=60.5

Q ss_pred             CcEEE-EEecCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-----------------------cHhHHHHcCCC--
Q 015368           74 RNVMV-MFYANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-----------------------EKDLAKEYNIL--  126 (408)
Q Consensus        74 ~~~~v-~f~a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-----------------------~~~~~~~~~i~--  126 (408)
                      +++++ .||++||++|..+++.+.+.+++++. ++.++.|+.|.                       +..+++.||+.  
T Consensus        30 ~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~~  109 (153)
T d1xvwa1          30 KNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNE  109 (153)
T ss_dssp             CEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEET
T ss_pred             CcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhhhh
Confidence            44444 45699999999999999999999877 88999888763                       23577888874  


Q ss_pred             ----cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHH
Q 015368          127 ----AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVR  157 (408)
Q Consensus       127 ----~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~  157 (408)
                          ..|++++++ +|++...+.+    .++...+.+-|.
T Consensus       110 ~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~  149 (153)
T d1xvwa1         110 QAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALA  149 (153)
T ss_dssp             TTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHH
T ss_pred             ccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHH
Confidence                346788887 9977655542    234566655554

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.58  E-value=4.3e-08  Score=77.19  Aligned_cols=86  Identities=19%  Similarity=0.369  Sum_probs=67.4

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      .||++++.|| +.||+.|..+++.+.+.++++.. ++.++.|..+.                            ...+++
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  104 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISR  104 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHH
Confidence            5789999999 89999999999999999999876 88888888753                            235778


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHH
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVR  157 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~  157 (408)
                      .||+.      +.|++++++ +|++...+.+    ..+.+++.+.|+
T Consensus       105 ~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lk  151 (158)
T d1zyea1         105 DYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVK  151 (158)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            88876      356888998 9977655443    245677777775

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=5.8e-08  Score=77.01  Aligned_cols=95  Identities=7%  Similarity=0.028  Sum_probs=65.9

Q ss_pred             CCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc---------
Q 015368           45 NNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY---------  114 (408)
Q Consensus        45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~---------  114 (408)
                      ..|..+|.+   .+...+++.+...-..+|++++.|| +.||++|...+|.+.+++.+++ ++.++.|..+         
T Consensus        19 ~vG~~APdF---~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~-~~~vv~Is~d~~~~~~~~~   94 (164)
T d1qxha_          19 QAGSKAQTF---TLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID-NTVVLCISADLPFAQSRFC   94 (164)
T ss_dssp             CTTSBCCCC---EEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST-TEEEEEEESSCHHHHTTCC
T ss_pred             CCCCCCCCe---EEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc-cceeeeEEcCCHHHHHHHH
Confidence            455566654   2344444444322236789999888 6799999999999999988876 5777777654         


Q ss_pred             --------------ccHhHHHHcCCC---------cCcEEEEEe-CCeEeEEe
Q 015368          115 --------------LEKDLAKEYNIL---------AYPTLYLFV-AGVRQFQF  143 (408)
Q Consensus       115 --------------~~~~~~~~~~i~---------~~Pt~~~~~-~g~~~~~~  143 (408)
                                    .+.++++.||+.         ..|++++++ +|++....
T Consensus        95 ~~~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~  147 (164)
T d1qxha_          95 GAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQ  147 (164)
T ss_dssp             SSTTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             HHhCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEE
Confidence                          245678888873         247889998 89776543

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=98.58  E-value=5.2e-08  Score=77.71  Aligned_cols=86  Identities=15%  Similarity=0.279  Sum_probs=65.8

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      +++++++.|| +.||+.|..+++.|.+..++++. ++.++.|+.+.                            +.++++
T Consensus        32 gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~  111 (170)
T d1zofa1          32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (170)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHH
Confidence            3458999999 99999999999999999999866 88899888753                            246788


Q ss_pred             HcCCC-----cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHH
Q 015368          122 EYNIL-----AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVR  157 (408)
Q Consensus       122 ~~~i~-----~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~  157 (408)
                      +||+.     ..|++++++ +|++...+.+.    ++.+++.+.|+
T Consensus       112 ~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~  157 (170)
T d1zofa1         112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVD  157 (170)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHH
T ss_pred             HcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHH
Confidence            89884     568899998 89775544322    35666665554

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.53  E-value=1.1e-07  Score=70.00  Aligned_cols=98  Identities=17%  Similarity=0.132  Sum_probs=75.7

Q ss_pred             CCCcccccChhHHHHHhc----cCCeEEEEEecCCCCcC---HHHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCC
Q 015368          161 TLGTYSITTTDEAERILT----VESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKS  229 (408)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~----~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~  229 (408)
                      |..+..|.|.++++..+.    .+++++|.|+++||.++   .+.+..++ ++.+++.|+.+   .+.+++++|++.   
T Consensus         1 gg~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~---   77 (112)
T d1ep7a_           1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGIT---   77 (112)
T ss_dssp             CCSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCC---
T ss_pred             CCCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecccccccccccccc---
Confidence            356677888888776663    46789999999999984   45566666 56667888876   567899999999   


Q ss_pred             CCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          230 KRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       230 ~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      +.|++++|+++. ....+.| .+.++|.+||+++
T Consensus        78 ~~Pt~~~~~~G~-~v~~~~G-~~~~~l~~~i~k~  109 (112)
T d1ep7a_          78 AMPTFHVYKDGV-KADDLVG-ASQDKLKALVAKH  109 (112)
T ss_dssp             BSSEEEEEETTE-EEEEEES-CCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCE-EEEEEeC-cCHHHHHHHHHHH
Confidence            599999998643 4556778 4889999999875

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.53  E-value=2.4e-07  Score=68.30  Aligned_cols=96  Identities=8%  Similarity=0.056  Sum_probs=75.1

Q ss_pred             CCCcccccChhHHHHHhccCCeEEEEEecCCCCc---CHHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368          161 TLGTYSITTTDEAERILTVESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l  234 (408)
                      .+.+..+.+.+++++++..+..+++.|+++||++   ..+.+.+++....++.|+.+   .++++++.|++.   +.|++
T Consensus         7 ~p~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~V~---~~Pt~   83 (113)
T d1r26a_           7 YPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVL---QLPTF   83 (113)
T ss_dssp             CSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCC---SSSEE
T ss_pred             CCceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccccccccccccccchhhHHHcccc---CCCEE
Confidence            4678899999999999999999999999999987   55567777755568888876   667899999999   69999


Q ss_pred             EEeecCCCcccccCCcCCHHHHHHHHh
Q 015368          235 IFLHLEAGKATPFRHQFTRLAIANFVT  261 (408)
Q Consensus       235 ~~~~~~~~~~~~y~g~~~~~~i~~fi~  261 (408)
                      ++|+++. ....+.|. +.+.+.++|+
T Consensus        84 ~~~~~G~-~v~~~~G~-~~~~l~~~l~  108 (113)
T d1r26a_          84 IIARSGK-MLGHVIGA-NPGMLRQKLR  108 (113)
T ss_dssp             EEEETTE-EEEEEESS-CHHHHHHHHH
T ss_pred             EEEECCE-EEEEEeCC-CHHHHHHHHH
Confidence            9998653 34466673 4555555553

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.47  E-value=4.8e-07  Score=67.67  Aligned_cols=108  Identities=14%  Similarity=0.060  Sum_probs=81.8

Q ss_pred             eEeeccccccccccCCc-cEEEEEeeCCCchHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--ccccchhhhccCCCCCC
Q 015368          268 VVTLTIHNAQFVFQDPR-KQLWLFAPAYGSDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--GVGRRVSQEFGVSGNAP  344 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~-~~~i~f~~~~~~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--~~~~~l~~~~~i~~~~~  344 (408)
                      +.+|+.+||.++.++.. .++-+|++|+..-+ .+.|.++|+.+.....++.++.+|+++.  .-++.++..|++.....
T Consensus         4 ~v~L~~~nFd~~v~~~~~~lV~Fya~wC~~ck-~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~   82 (122)
T d2c0ga2           4 CVDLDELSFEKTVERFPYSVVKFDIASPYGEK-HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNF   82 (122)
T ss_dssp             CEECCTTTHHHHHTTSSEEEEEEEESSCCSHH-HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSC
T ss_pred             eEEcChHhHHHHHhcCCcEEEEEECCCCCccc-CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCC
Confidence            56999999999998876 44557778987434 3789999987642112399999998753  11467899999976668


Q ss_pred             cEEEEEccCC---ccccCCCCCChHHHHHHHHHHh
Q 015368          345 RVIAYSARDA---KKYVLNGELTLSSIKSFGEEFL  376 (408)
Q Consensus       345 p~i~i~~~~~---~~y~~~~~~~~~~i~~Fi~~~~  376 (408)
                      |.+.++..+.   ..+.+.|..+.++|.+||++-.
T Consensus        83 PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~  117 (122)
T d2c0ga2          83 PSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANT  117 (122)
T ss_dssp             CEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             CcEEEEeCCcccccccccCCCCCHHHHHHHHHHhc
Confidence            8999887632   4567889999999999998753

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.3e-07  Score=72.18  Aligned_cols=91  Identities=13%  Similarity=0.170  Sum_probs=67.2

Q ss_pred             cCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhcC-----CcEEEEEeCccc----------------------------
Q 015368           71 GKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG-----EADLVMVDAYLE----------------------------  116 (408)
Q Consensus        71 ~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~-----~v~~~~v~~~~~----------------------------  116 (408)
                      -.||++||.||.+||+ .|....+.+.++.+.++.     .+.+..+..+..                            
T Consensus        18 ~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (160)
T d1wp0a1          18 YLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEV   97 (160)
T ss_dssp             GTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHH
T ss_pred             hCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHh
Confidence            3789999999999996 799999999998887643     344444443211                            


Q ss_pred             HhHHHHcCCC---------------cCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHHhHhC
Q 015368          117 KDLAKEYNIL---------------AYPTLYLFV-AGVRQFQFFGERTRDVISAWVREKMT  161 (408)
Q Consensus       117 ~~~~~~~~i~---------------~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~~~  161 (408)
                      ..+.+.|++.               ..+++++++ +|+++..|.+..+.+++.+-|.+.+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~~~lk  158 (160)
T d1wp0a1          98 DQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR  158 (160)
T ss_dssp             HHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHHHHHT
T ss_pred             hHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence            1244556543               236888998 99999999888999999988887763

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.45  E-value=2.5e-07  Score=74.39  Aligned_cols=88  Identities=16%  Similarity=0.210  Sum_probs=68.9

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------------cHhHHHHcC
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------EKDLAKEYN  124 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------~~~~~~~~~  124 (408)
                      .||.++++|| +.||+.|..+++.|.+.+++++. ++.++.|++|.                         +..++++||
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~~~yG  108 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD  108 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHHHHTT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHHHHhC
Confidence            6789999999 88899999999999999999976 88888888764                         345788888


Q ss_pred             CC------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHhH
Q 015368          125 IL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK  159 (408)
Q Consensus       125 i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~  159 (408)
                      +.      ..|++++++ +|.+...+..    .++.+++.+.|+..
T Consensus       109 v~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaL  154 (186)
T d1n8ja_         109 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHH
Confidence            84      368899998 8866544322    36788887777643

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.9e-07  Score=66.90  Aligned_cols=94  Identities=17%  Similarity=0.205  Sum_probs=72.6

Q ss_pred             cccccChhHHHHHhcc--CCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEE
Q 015368          164 TYSITTTDEAERILTV--ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALI  235 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~--~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~  235 (408)
                      +++|.|.+++++.++.  ++.+++.|+++||+++   .+.+..+++..++..|+.+   .+.++++++++.   +.|+++
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~~~~V~---~~Pt~~   78 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVK---CMPTFQ   78 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCC---BSSEEE
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccccceeeecccccCHhHHHHcCce---EEEEEE
Confidence            4678899999999964  4678888999999984   4456666655556667654   667899999999   599999


Q ss_pred             EeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          236 FLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       236 ~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      +|+++. ....+.|. +.+.|.+||++
T Consensus        79 ~~~~G~-~v~~~~G~-~~~~l~~~i~~  103 (105)
T d2ifqa1          79 FFKKGQ-KVGEFSGA-NKEKLEATINE  103 (105)
T ss_dssp             EEETTE-EEEEEESC-CHHHHHHHHHH
T ss_pred             EEECCE-EEEEEeCC-CHHHHHHHHHh
Confidence            998653 55677785 78899999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.43  E-value=5.8e-07  Score=66.02  Aligned_cols=97  Identities=20%  Similarity=0.305  Sum_probs=74.7

Q ss_pred             CCcccccChhHHHHHhc--cCCeEEEEEecCCCCcC---HHHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCC
Q 015368          162 LGTYSITTTDEAERILT--VESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRP  232 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~~--~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p  232 (408)
                      ..+.++.+.++++..+.  +++.++|.|+++||.++   .+.+.+++ ++.+.+.++.+   .+.+++++|++.   +.|
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l~~~~~V~---~~P   81 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNIS---SMP   81 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCC---SSS
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCcchhhcCCCc---ccc
Confidence            44668889999988774  45688888999999984   44566666 66667777665   567899999999   599


Q ss_pred             eEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          233 ALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       233 ~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      ++++|+.+. ....+.|. +.++|.+||++|
T Consensus        82 t~~~~~~G~-~v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          82 TFVFLKNGV-KVEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             EEEEEETTE-EEEEEESC-CHHHHHHHHHHT
T ss_pred             EEEEEECCE-EEEEEeCC-CHHHHHHHHHhc
Confidence            999997653 55677785 567899999876

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.43  E-value=6.7e-07  Score=68.02  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=90.2

Q ss_pred             CCcEEcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCC--cCcEEEE
Q 015368           56 KDVVSLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNIL--AYPTLYL  133 (408)
Q Consensus        56 ~~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~--~~Pt~~~  133 (408)
                      .-+.++|.+++......+++.++.|+.+. .........+.++|+++++++.|+.+|.++.....+.||+.  ..|.+++
T Consensus         6 PLv~e~~~~n~~~~~~~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~~~l~~~gl~~~~~P~~~i   84 (133)
T d2djka1           6 PLIGEIGPETYSDYMSAGIPLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAI   84 (133)
T ss_dssp             CCSEECCHHHHHHHHHTTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEE
T ss_pred             CceeccChhhHHHHhcCCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhHHHHHHhcCCcccCCcEEE
Confidence            36778999999999988999999998765 45688899999999999999999999999988888999984  5899999


Q ss_pred             Ee-CCeEeEEe--eCCCCHHHHHHHHHhHhCCCc
Q 015368          134 FV-AGVRQFQF--FGERTRDVISAWVREKMTLGT  164 (408)
Q Consensus       134 ~~-~g~~~~~~--~g~~~~~~l~~~i~~~~~~~~  164 (408)
                      +. ++.....|  .+..+.+.|.+|++..+...+
T Consensus        85 ~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~Gkl  118 (133)
T d2djka1          85 QEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKI  118 (133)
T ss_dssp             ECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHTCC
T ss_pred             EEcCCCceecCCccccCCHHHHHHHHHHHHcCCC
Confidence            87 44444444  467899999999999875443

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.43  E-value=2.1e-07  Score=69.09  Aligned_cols=99  Identities=9%  Similarity=0.071  Sum_probs=72.2

Q ss_pred             CCcccccChhHHHHHh-ccCCeEEEEEecCCCCcC---HHHHHHHh-ccC-----CceeEEEecCHhHHhhcCCCCCCCC
Q 015368          162 LGTYSITTTDEAERIL-TVESKLVLGFLHDLEGME---SEELAAAS-KLH-----SDVNFYQTTSADVAEFFHIHPKSKR  231 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~-~~~~~~vi~f~~~~~~~~---~~~~~~~a-~~~-----~~~~f~~~~~~~l~~~~~i~~~~~~  231 (408)
                      .+++.+ +.+.+++++ ++++.++|.|+.+||.++   .+.+.+++ .+.     ....+........+.++++.   ++
T Consensus         2 g~V~~l-t~~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~   77 (116)
T d2djja1           2 GPVTVV-VAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQ---GF   77 (116)
T ss_dssp             CSSEEC-CTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCCSSCCS---SS
T ss_pred             cCcEEc-ccCCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccchhhhccccc---CC
Confidence            355566 446676665 677789999999999984   34556665 222     23456666666677788888   69


Q ss_pred             CeEEEeecCCC-cccccCCcCCHHHHHHHHhcCC
Q 015368          232 PALIFLHLEAG-KATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       232 p~l~~~~~~~~-~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                      |++++|+.+.. ....|.|.++.++|.+||+++.
T Consensus        78 Pti~~f~~g~~~~~~~~~g~~~~~~l~~fi~~~~  111 (116)
T d2djja1          78 PTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENG  111 (116)
T ss_dssp             SEEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTS
T ss_pred             CEEEEEECCccCceEEecCCCCHHHHHHHHHHcc
Confidence            99999987643 4578999999999999998764

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=1e-06  Score=65.81  Aligned_cols=98  Identities=11%  Similarity=0.164  Sum_probs=71.4

Q ss_pred             CcccccChhHHHHHhccCCeEEEEEecCCCCcC-HHHHHHHh-cc--CCceeEEEe--------cCHhHHhhcC--CCCC
Q 015368          163 GTYSITTTDEAERILTVESKLVLGFLHDLEGME-SEELAAAS-KL--HSDVNFYQT--------TSADVAEFFH--IHPK  228 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~-~~~~~~~a-~~--~~~~~f~~~--------~~~~l~~~~~--i~~~  228 (408)
                      .+.+| +.+.+++++..++.++|.|+.+||... .+.+.++| .+  ..+...+.+        .+.+++.+++  +.  
T Consensus         5 ~~v~L-~~~nFd~~i~~~~~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~--   81 (122)
T d1g7ea_           5 GALPL-DTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE--   81 (122)
T ss_dssp             SSCSC-SHHHHHHHGGGSSEEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSS--
T ss_pred             ceEEC-CHHhHHHHHhhCCeEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhccccc--
Confidence            45566 568899999999999999999998643 24555555 22  223322222        3566888765  55  


Q ss_pred             CCCCeEEEeecCCC-cccccCCcCCHHHHHHHHhcCC
Q 015368          229 SKRPALIFLHLEAG-KATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       229 ~~~p~l~~~~~~~~-~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                       ++|++.+|+.++. .+..|+|.++.++|.+||+++.
T Consensus        82 -~yPTi~~f~~G~~~~~~~y~G~rt~~~l~~fi~~~~  117 (122)
T d1g7ea_          82 -SYPVFYLFRDGDFENPVPYSGAVKVGAIQRWLKGQG  117 (122)
T ss_dssp             -SCEEEEEEESSCCCCCEEEESCCCHHHHHHHHHTTS
T ss_pred             -CCCeEEEEecCcccCceecCCCCCHHHHHHHHHhcc
Confidence             6999999998753 4678999999999999999874

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.9e-07  Score=67.04  Aligned_cols=96  Identities=11%  Similarity=0.170  Sum_probs=74.2

Q ss_pred             CcccccChhHHHHHhcc--CCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368          163 GTYSITTTDEAERILTV--ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~--~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l  234 (408)
                      .++.|.|.++++..+..  ++.++|.|+++||+++   .+.+..+++...++.|..+   .++++++++++.   +.|++
T Consensus         2 ~v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~~~~v~---~~Pt~   78 (107)
T d1gh2a_           2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAATNNIS---ATPTF   78 (107)
T ss_dssp             CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCC---SSSEE
T ss_pred             ceEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhccccccccccccccccccchhhhhhcCce---eceEE
Confidence            35678899999988854  5678888999999984   4456667744456777764   677899999999   59999


Q ss_pred             EEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          235 IFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       235 ~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      ++|+.+. ....+.|. +.+.|.++|+++
T Consensus        79 ~~~~~G~-~v~~~~G~-~~~~l~~~i~k~  105 (107)
T d1gh2a_          79 QFFRNKV-RIDQYQGA-DAVGLEEKIKQH  105 (107)
T ss_dssp             EEEETTE-EEEEEESS-CHHHHHHHHHHH
T ss_pred             EEEECCE-EEEEEeCC-CHHHHHHHHHHh
Confidence            9998653 55677784 889999999864

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=1.5e-06  Score=64.96  Aligned_cols=106  Identities=16%  Similarity=0.213  Sum_probs=86.7

Q ss_pred             EcChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCc-CcEEEEEe-CC
Q 015368           60 SLNGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILA-YPTLYLFV-AG  137 (408)
Q Consensus        60 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~-~Pt~~~~~-~g  137 (408)
                      +++.+++......+.|+++.|+.+-- .-....+.+.++|+++++++.|+.+|.++.....+.||+.. .|.+++.. .+
T Consensus         4 ei~~~~~~~y~~~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~~~l~~fgl~e~~P~~~i~~~~~   82 (125)
T d2b5ea3           4 EIDGSVFAQYVESGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNMKEQFPLFAIHDMTE   82 (125)
T ss_dssp             BCCHHHHHHHHHTTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTTCEEEEEEHHHHTTHHHHTTCCSCSSEEEEEETTT
T ss_pred             ccCHHHHHHHHhcCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCeeEEEEEchHHhHHHHHHcCCCccCCcEEEEeccc
Confidence            57889999999999999999998753 45678999999999999999999999999988999999865 89999887 22


Q ss_pred             eEeEEe-------------eCCCCHHHHHHHHHhHhCCCccc
Q 015368          138 VRQFQF-------------FGERTRDVISAWVREKMTLGTYS  166 (408)
Q Consensus       138 ~~~~~~-------------~g~~~~~~l~~~i~~~~~~~~~~  166 (408)
                      ......             .+..+.+.|.+|++..+...+..
T Consensus        83 ~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~l~GKlkP  124 (125)
T d2b5ea3          83 DLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASP  124 (125)
T ss_dssp             TEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHHHHTCCCC
T ss_pred             CcccccchhhhhhcccccccccCCHHHHHHHHHHHHcCCcCC
Confidence            233332             36789999999999987655543

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=4.9e-07  Score=70.88  Aligned_cols=82  Identities=13%  Similarity=0.223  Sum_probs=63.1

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC--------------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--------------------------------------  113 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~--------------------------------------  113 (408)
                      +.+.+++.|..+.||+|+++.|.+.++.+.   ++.+..+..                                      
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~---~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  101 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL---GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPA  101 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT---TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc---CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchh
Confidence            457899999999999999999999988653   333333321                                      


Q ss_pred             ------cccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          114 ------YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       114 ------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                            ..+..+++++||+|+|+++ +.||+   .+.|..+.+.|.++|++..
T Consensus       102 ~~~~~i~~~~~la~~lgv~GTPt~~-~~nG~---~v~G~~~~e~l~~~i~~~~  150 (156)
T d1eeja1         102 SCDVDIADHYALGVQLGVSGTPAVV-LSNGT---LVPGYQPPKEMKEFLDEHQ  150 (156)
T ss_dssp             CCSCCHHHHHHHHHHHTCCSSSEEE-CTTSC---EEESCCCHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHcCCcCCCEEE-EeCCe---EecCCCCHHHHHHHHHHHH
Confidence                  1235678999999999964 56784   4579999999999998764

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.39  E-value=4.2e-07  Score=71.83  Aligned_cols=109  Identities=8%  Similarity=0.041  Sum_probs=71.3

Q ss_pred             CCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc--------
Q 015368           45 NNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL--------  115 (408)
Q Consensus        45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~--------  115 (408)
                      ..|..+|++   .+...+++++...-..+|+++|.|| +.||+.|...++.+.+...+++ ++.++.|..+.        
T Consensus        17 ~vG~~aPdF---~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~-~~~vv~Is~d~~~~~~~~~   92 (163)
T d1psqa_          17 QVGDKALDF---SLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD-NTVVLTVSMDLPFAQKRWC   92 (163)
T ss_dssp             CTTSBCCCC---EEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT-TEEEEEEESSCHHHHHHHH
T ss_pred             CCCCCCCCe---EEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc-ccceEEEEeccHHHHHHHH
Confidence            445556654   2344444444333347789999998 6799999999999988888776 57777777653        


Q ss_pred             ---------------cHhHHHHcCCCc------CcEEEEEe-CCeEeEEeeC-----CCCHHHHHHHHH
Q 015368          116 ---------------EKDLAKEYNILA------YPTLYLFV-AGVRQFQFFG-----ERTRDVISAWVR  157 (408)
Q Consensus       116 ---------------~~~~~~~~~i~~------~Pt~~~~~-~g~~~~~~~g-----~~~~~~l~~~i~  157 (408)
                                     +..+.+.||+..      .+++++++ +|++.....+     ..+.+.+.+.++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk  161 (163)
T d1psqa_          93 GAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAK  161 (163)
T ss_dssp             HHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred             HHcCCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHh
Confidence                           124667788643      23678887 8977554322     234566766664

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=4.4e-07  Score=73.68  Aligned_cols=88  Identities=20%  Similarity=0.351  Sum_probs=70.2

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      .+|++++.|| +.||+.|..+...+.+..++++. ++.++.|.+|.                            +.++++
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va~  112 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLSE  112 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHHH
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHHH
Confidence            5789999999 99999999999999999999988 89999998763                            345788


Q ss_pred             HcCCC------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHhH
Q 015368          122 EYNIL------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK  159 (408)
Q Consensus       122 ~~~i~------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~  159 (408)
                      .||+.      .+|++++++ +|.+...+.+    .++.+++.+.|+..
T Consensus       113 ~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         113 DYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             HTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhh
Confidence            89885      478899998 8865544332    36778887776544

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.37  E-value=7.8e-07  Score=68.34  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=80.1

Q ss_pred             CCceEeecccccccccc-CCccE-EEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCC
Q 015368          265 HPLVVTLTIHNAQFVFQ-DPRKQ-LWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSG  341 (408)
Q Consensus       265 ~p~v~~lt~~~~~~~~~-~~~~~-~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  341 (408)
                      .+.+.+|+..||..+.. .+.++ +.+|++||. |+.+.+.|.++|..+++....+.++.+|++.     .+++.+++. 
T Consensus        11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~-----~~~~~~~v~-   84 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE-----NDVRGVVIE-   84 (140)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG-----CCCSSCCCS-
T ss_pred             CCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc-----hhccccccc-
Confidence            45789999999998764 44454 456667787 9999999999999986421227788888653     567889995 


Q ss_pred             CCCcEEEEEcc--CCccccCCCCCChHHHHHHHHHHhcC
Q 015368          342 NAPRVIAYSAR--DAKKYVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       342 ~~~p~i~i~~~--~~~~y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                       ..|.+.++..  ......|.|..+.+.|.+||++-..-
T Consensus        85 -~~Ptl~~f~~g~~~~~~~y~G~~t~~~l~~fi~~~~~~  122 (140)
T d2b5ea1          85 -GYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHF  122 (140)
T ss_dssp             -SSSEEEEECCTTSCCCCBCCSCCCHHHHHHHHHHHCTT
T ss_pred             -cCCeEEEEECCEEcceeEeCCCCCHHHHHHHHHHcCCC
Confidence             3688888865  23455688999999999999985443

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.35  E-value=8.4e-07  Score=65.44  Aligned_cols=97  Identities=15%  Similarity=0.145  Sum_probs=72.8

Q ss_pred             CCcccccChhHHHHHh----ccCCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCC
Q 015368          162 LGTYSITTTDEAERIL----TVESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKR  231 (408)
Q Consensus       162 ~~~~~i~~~~~~~~~~----~~~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~  231 (408)
                      ..+..+.|.+++++.+    +.++.++|.|+++||.++   .+.+..+++..+++.|+.+   .+.+++++|+++   +.
T Consensus         6 ~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~~~~V~---~~   82 (114)
T d1xfla_           6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQ---AM   82 (114)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCC---SS
T ss_pred             CcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccccceeEEEeeeceeecccccee---ee
Confidence            3456677888887665    446788888999999984   4456666655566777665   567899999999   69


Q ss_pred             CeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          232 PALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       232 p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      |++++|+++. ....+.|. +.++|.+||.++
T Consensus        83 Pt~~~~~~G~-~v~~~~G~-~~~~l~~~i~k~  112 (114)
T d1xfla_          83 PTFMFLKEGK-ILDKVVGA-KKDELQSTIAKH  112 (114)
T ss_dssp             SEEEEEETTE-EEEEEESC-CHHHHHHHHHHH
T ss_pred             EEEEEEECCE-EEEEEeCc-CHHHHHHHHHHh
Confidence            9999997653 44566774 789999999875

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.34  E-value=5e-07  Score=66.60  Aligned_cols=97  Identities=16%  Similarity=0.171  Sum_probs=71.9

Q ss_pred             CcccccChhHHHHHh----ccCCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCC
Q 015368          163 GTYSITTTDEAERIL----TVESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRP  232 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~----~~~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p  232 (408)
                      .+..+.+.+++++.+    ..++.++|.|+++||.++   .+.+..+++...+..|+.+   .+.+++.+|+|.   ++|
T Consensus         5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~I~---~~P   81 (113)
T d1ti3a_           5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEWNVE---AMP   81 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCS---STT
T ss_pred             cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeeccccccccCeec---ccc
Confidence            456677777666554    456788999999999984   4456667755566777765   567899999999   699


Q ss_pred             eEEEeecCCCcccccCCcCCHHHHHHHHhcCC
Q 015368          233 ALIFLHLEAGKATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       233 ~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                      ++++|+++. ....+.| .+.++|.+||.+|.
T Consensus        82 t~~~~k~G~-~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          82 TFIFLKDGK-LVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEEEETTE-EEEEEEC-CCTTHHHHHHHHHH
T ss_pred             eEEEEECCE-EEEEEcC-CCHHHHHHHHHHHh
Confidence            999998553 4456667 47789999998763

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.34  E-value=1.1e-06  Score=69.68  Aligned_cols=108  Identities=11%  Similarity=0.067  Sum_probs=68.4

Q ss_pred             CCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCccc-------
Q 015368           45 NNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLE-------  116 (408)
Q Consensus        45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~-------  116 (408)
                      ..|..+|.+   .+...+++.+...-..+|++++.||+ .||+.|..+++.+.+..+..  ++.++.|..+..       
T Consensus        18 ~iG~~aP~F---~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~--g~~vv~Is~d~~~~~~~~~   92 (166)
T d1xvqa_          18 AVGSPAPAF---TLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAAS--GATVLCVSKDLPFAQKRFC   92 (166)
T ss_dssp             CTTSBCCCC---EEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT--TCEEEEEESSCHHHHTTCC
T ss_pred             CCcCCCCCe---EEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhcccc--cccccccccchHHHHHHHH
Confidence            344555544   34444555444333478899999995 58888999999998877765  567777776532       


Q ss_pred             ---------------HhHHHHcCCC---------cCcEEEEEe-CCeEeEEeeC-----CCCHHHHHHHHH
Q 015368          117 ---------------KDLAKEYNIL---------AYPTLYLFV-AGVRQFQFFG-----ERTRDVISAWVR  157 (408)
Q Consensus       117 ---------------~~~~~~~~i~---------~~Pt~~~~~-~g~~~~~~~g-----~~~~~~l~~~i~  157 (408)
                                     ..+.+.|++.         ..|++++++ +|++.....+     ..+.+++.+.|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~  163 (166)
T d1xvqa_          93 GAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALG  163 (166)
T ss_dssp             ------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred             HHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHH
Confidence                           2355667653         136888887 9977654332     234555555543

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.33  E-value=8.2e-07  Score=70.85  Aligned_cols=102  Identities=20%  Similarity=0.214  Sum_probs=68.9

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhcC---CcEEEEEeCccc---Hh----HH-----
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG---EADLVMVDAYLE---KD----LA-----  120 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~---~v~~~~v~~~~~---~~----~~-----  120 (408)
                      .+.+.+++.+...-..||+++|.||.+||+ .|....+.+.++.+.++.   ++.++.|.+|..   ++    .+     
T Consensus        15 ~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp~~Dtp~~l~~y~~~~~~   94 (172)
T d1xzoa1          15 TFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPL   94 (172)
T ss_dssp             EEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCC
T ss_pred             EEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccccccchHHHHHHHHHHhcc
Confidence            334444444442224789999999999997 799999999999888743   788888877521   11    11     


Q ss_pred             ---------------------HHcCC-----------CcCcEEEEEe-CCeEeEEeeCC--CCHHHHHHHHHh
Q 015368          121 ---------------------KEYNI-----------LAYPTLYLFV-AGVRQFQFFGE--RTRDVISAWVRE  158 (408)
Q Consensus       121 ---------------------~~~~i-----------~~~Pt~~~~~-~g~~~~~~~g~--~~~~~l~~~i~~  158 (408)
                                           +.|++           ...|.+++++ +|+++..|.|.  ...+.+.+-|+.
T Consensus        95 ~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~~~l~~dik~  167 (172)
T d1xzoa1          95 SFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKS  167 (172)
T ss_dssp             CGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHH
T ss_pred             ccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCHHHHHHHHHH
Confidence                                 12221           1236788888 99888888875  346777766654

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=2.7e-06  Score=67.40  Aligned_cols=81  Identities=11%  Similarity=0.149  Sum_probs=63.2

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--------------------------------------
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--------------------------------------  114 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--------------------------------------  114 (408)
                      .+.+++.|..+.||+|+++.+.++++.+..  ++.+..++..                                      
T Consensus        36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~--~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~  113 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFWQQARPWVDSG--KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  113 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHTT--SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHhcc--ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhccccccc
Confidence            356899999999999999999999987654  4666655531                                      


Q ss_pred             ------------ccHhHHHHcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHH
Q 015368          115 ------------LEKDLAKEYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       115 ------------~~~~~~~~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i  156 (408)
                                  ++..+++++||+|+|++++.+ +| ......|..+.+.|.+.+
T Consensus       114 ~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g-~~~~~~G~~~~~~l~~il  167 (169)
T d1v58a1         114 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKEN-TLQQAVGLPDQKTLNIIM  167 (169)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTT-EEEEEESSCCHHHHHHHT
T ss_pred             chhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHh
Confidence                        123467889999999998888 66 667889999998877654

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.22  E-value=1.5e-06  Score=67.50  Aligned_cols=80  Identities=11%  Similarity=0.164  Sum_probs=61.4

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeC--------------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDA--------------------------------------  113 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~--------------------------------------  113 (408)
                      +.+.+++.|.-+.||+|+++.+.++++.+..   +.+..+..                                      
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~  101 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLG---ITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEV  101 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTT---EEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSC
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccC---ceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccch
Confidence            4577899999999999999999999987642   33333221                                      


Q ss_pred             ------cccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHh
Q 015368          114 ------YLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       114 ------~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                            .++..+++++||+|+||+++ .||+   ...|..+.++|.++|++
T Consensus       102 ~~~~~i~~~~~la~~lGv~GTPt~~~-~nG~---~i~G~~~~~~l~~~l~~  148 (150)
T d1t3ba1         102 KTPNIVKKHYELGIQFGVRGTPSIVT-STGE---LIGGYLKPADLLRALEE  148 (150)
T ss_dssp             CCSSHHHHHHHHHHHHTCCSSCEEEC-TTSC---CCCSCCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHhcCcCCCCEEEE-cCCc---EecCCCCHHHHHHHHHh
Confidence                  12346789999999998764 5784   46899999999999975

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.21  E-value=2.7e-06  Score=62.74  Aligned_cols=92  Identities=11%  Similarity=0.129  Sum_probs=71.3

Q ss_pred             cccChhHHHHHhccCCeEEEEEecCCCCcCHH---HHHHHh-ccCCceeEEEecC-------HhHHhhcCCCCCCCCCeE
Q 015368          166 SITTTDEAERILTVESKLVLGFLHDLEGMESE---ELAAAS-KLHSDVNFYQTTS-------ADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       166 ~i~~~~~~~~~~~~~~~~vi~f~~~~~~~~~~---~~~~~a-~~~~~~~f~~~~~-------~~l~~~~~i~~~~~~p~l  234 (408)
                      ++.+.+++++.++.++.+++.|+.+||.++..   .+..++ .....+.+..+..       ..++++++|.   +.|++
T Consensus        12 ~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~---~~PTl   88 (115)
T d1zmaa1          12 EVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIP---TVPGF   88 (115)
T ss_dssp             EECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCC---SSCEE
T ss_pred             eeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccc---cccEE
Confidence            44588999999999999999999999998544   455544 4555565554421       3578899999   69999


Q ss_pred             EEeecCCCcccccCCcCCHHHHHHHHh
Q 015368          235 IFLHLEAGKATPFRHQFTRLAIANFVT  261 (408)
Q Consensus       235 ~~~~~~~~~~~~y~g~~~~~~i~~fi~  261 (408)
                      ++++++. ....+.|..+.++|.+||.
T Consensus        89 i~~~~gk-~~~~~~G~~~~~el~~fla  114 (115)
T d1zmaa1          89 VHITDGQ-INVRCDSSMSAQEIKDFAG  114 (115)
T ss_dssp             EEEETTE-EEEECCTTCCHHHHHHHHT
T ss_pred             EEEECCE-EEEEEcCCCCHHHHHHHHc
Confidence            9998653 5778999999999999985

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=98.19  E-value=2.5e-06  Score=67.25  Aligned_cols=96  Identities=7%  Similarity=-0.043  Sum_probs=65.0

Q ss_pred             cCCCCCCCCccCCCcEEcChhhHHHHHcCCCcEEEEEec-CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcc-------
Q 015368           44 LNNNHTWPLLYAKDVVSLNGKNFSEFMGKNRNVMVMFYA-NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYL-------  115 (408)
Q Consensus        44 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~-------  115 (408)
                      ...|..+|.+   .+...+++++...-..+|++++.||. .||+.|..+++.|++..++++ ++.++.|.++.       
T Consensus        16 p~vG~~APdF---~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-~~~vi~iS~d~~~~~~~~   91 (164)
T d1q98a_          16 PQVGEIVENF---ILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-NTIVLCISADLPFAQARF   91 (164)
T ss_dssp             CCTTCBCCCC---EEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-TEEEEEEESSCHHHHTTC
T ss_pred             CCCCCCCCCc---EEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc-cceEEeecCCcHHHHHHH
Confidence            3455566655   23444444443222367899999995 578889999999999999987 57888887753       


Q ss_pred             ----------------cHhHHHHcCCC-------c--CcEEEEEe-CCeEeEEe
Q 015368          116 ----------------EKDLAKEYNIL-------A--YPTLYLFV-AGVRQFQF  143 (408)
Q Consensus       116 ----------------~~~~~~~~~i~-------~--~Pt~~~~~-~g~~~~~~  143 (408)
                                      +..+.+.|++.       +  .|++++++ +|++.+..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~  145 (164)
T d1q98a_          92 CGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQ  145 (164)
T ss_dssp             TTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             HHHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEE
Confidence                            23456677653       2  37889998 89766543

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.18  E-value=3.8e-06  Score=58.50  Aligned_cols=107  Identities=11%  Similarity=0.095  Sum_probs=79.5

Q ss_pred             eEeeccccccccccCCc--cEEEEEeeCCC--chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc-ccccchhhhccCCCC
Q 015368          268 VVTLTIHNAQFVFQDPR--KQLWLFAPAYG--SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE-GVGRRVSQEFGVSGN  342 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~--~~~i~f~~~~~--~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~-~~~~~l~~~~~i~~~  342 (408)
                      +..++.+++........  -+++.|+..++  -.+++..++++|+++..+ .++.|+|+|-++. .......+.|||+-.
T Consensus         2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n-~~LsivWIDPD~FPlm~~yWe~tF~IDl~   80 (119)
T d1a8ya3           2 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDN-PDLSIIWIDPDDFPLLVPYWEKTFDIDLS   80 (119)
T ss_dssp             EEECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTC-SSCCEEEECGGGCTTTHHHHHHHHTCCTT
T ss_pred             ccccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcC-CCceEEEECCcccchHHHHHHHhcCCCCC
Confidence            45677788777776655  67778887765  568999999999999876 3499999998876 223345588999876


Q ss_pred             CCcEEEEEcc---CCccccCCC---CCChHHHHHHHHHHh
Q 015368          343 APRVIAYSAR---DAKKYVLNG---ELTLSSIKSFGEEFL  376 (408)
Q Consensus       343 ~~p~i~i~~~---~~~~y~~~~---~~~~~~i~~Fi~~~~  376 (408)
                       .|.+.+.+.   .+..|.+.+   ..+.+++++||++++
T Consensus        81 -~PqIGVVdv~dadSvW~~~~~~~d~~t~~~Le~WiedVl  119 (119)
T d1a8ya3          81 -APQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVL  119 (119)
T ss_dssp             -SCEEEEEETTTCCEEECC-------CCHHHHHHHHHHHC
T ss_pred             -CCceeeEecccCcceeeecccccccccHHHHHHHHHHhC
Confidence             578888887   456777743   458899999999975

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=98.18  E-value=4.2e-06  Score=67.09  Aligned_cols=87  Identities=13%  Similarity=0.106  Sum_probs=67.8

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--c----------------------------------
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--L----------------------------------  115 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--~----------------------------------  115 (408)
                      .+++++|.|....||+|+.+.+.+.++.+++.+.+.+......  .                                  
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMSKAYATMIALEVEDKMVPVMFNRIHTL   96 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEECSSSSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEeccccccccHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            4678999999999999999999999999998776665554321  0                                  


Q ss_pred             ---------------------------------------cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368          116 ---------------------------------------EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus       116 ---------------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i  156 (408)
                                                             +...++++||+|+||+++  ||+......|..+.+.+.+-|
T Consensus        97 ~~~~~~~~~l~~~~~~~gvd~~~~~~~~~~~~~~~~v~~~~~~~~~~gi~gTPt~~I--nGk~~v~~~~~~~~~~l~~~i  174 (181)
T d1beda_          97 RKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSGLTGVPAVVV--NNRYLVQGQSVKSLDEYFDLV  174 (181)
T ss_dssp             CCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHTCCSSSEEEE--TTTEEECGGGCCSHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHhcCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCccccEEEE--CCEEeeCCCCCCCHHHHHHHH
Confidence                                                   113457789999999887  887666677888888888887


Q ss_pred             HhHh
Q 015368          157 REKM  160 (408)
Q Consensus       157 ~~~~  160 (408)
                      +..+
T Consensus       175 ~~L~  178 (181)
T d1beda_         175 NYLL  178 (181)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7554

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.16  E-value=4e-06  Score=66.64  Aligned_cols=81  Identities=14%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             CCcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcc-----------------------------------
Q 015368           73 NRNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYL-----------------------------------  115 (408)
Q Consensus        73 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~-----------------------------------  115 (408)
                      .+..++.|....||||+++.|.+.++.+++.+  .+.+..+...-                                   
T Consensus        24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (172)
T d1z6ma1          24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD  103 (172)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhcc
Confidence            45689999999999999999999999888755  44444433210                                   


Q ss_pred             -------------------------------cHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHh
Q 015368          116 -------------------------------EKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus       116 -------------------------------~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                                                     ....++++||+|+||+++  ||+   .+.|..+.+++.++|++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~~gI~gTPt~~I--ng~---~~~g~~~~~~~~~~id~  172 (172)
T d1z6ma1         104 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEANAAHIQFVPTIII--GEY---IFDESVTEEELRGYIEK  172 (172)
T ss_dssp             HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHHHHHTCCSSCEEEE--TTE---EECTTCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCCCcCCEEEE--CCE---EecCCCCHHHHHHHHcC
Confidence                                           012356799999999876  884   46899999999998864

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=98.16  E-value=2.6e-06  Score=67.45  Aligned_cols=88  Identities=20%  Similarity=0.327  Sum_probs=68.7

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      ++++++|.|| +.||+.|..++..|.+.++++++ ++.++.|++|.                            +..+++
T Consensus        26 g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~  105 (170)
T d2h01a1          26 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIAR  105 (170)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHH
T ss_pred             CCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHHH
Confidence            3578999999 89999999999999999999977 89999999863                            246788


Q ss_pred             HcCCC-----cCcEEEEEe-CCeEeEEeeCC----CCHHHHHHHHHhH
Q 015368          122 EYNIL-----AYPTLYLFV-AGVRQFQFFGE----RTRDVISAWVREK  159 (408)
Q Consensus       122 ~~~i~-----~~Pt~~~~~-~g~~~~~~~g~----~~~~~l~~~i~~~  159 (408)
                      +||+.     ..+++++++ +|.+...+.+.    ++.+++.+.|+..
T Consensus       106 ~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l  153 (170)
T d2h01a1         106 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  153 (170)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            88873     357888887 88766666443    3567777777543

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=9.5e-06  Score=58.99  Aligned_cols=100  Identities=15%  Similarity=0.238  Sum_probs=81.2

Q ss_pred             ChhhHHHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC-eEe
Q 015368           62 NGKNFSEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQ  140 (408)
Q Consensus        62 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~  140 (408)
                      +....+.++..++.++|-|+.+--   ......|.++|+.++ ++.|+.+.   +.++++++++.. |++++|++. +..
T Consensus         7 ~~~~~e~f~~~~~v~VVGfF~~~~---~~~~~~F~~~A~~~~-d~~F~~t~---~~~v~~~~~v~~-~~Ivl~k~~de~~   78 (110)
T d1bjxa_           7 DGAAAESLVESSEVAVIGFFKDVE---SDSAKQFLQAAEAID-DIPFGITS---NSDVFSKYQLDK-DGVVLFKKFDEGR   78 (110)
T ss_dssp             SHHHHHHHHHHSSEEEEEECTTTT---SHHHHHHHHHHHHCS-SSCEEEEC---CSHHHHHTTCSS-CEEEEEESSSSSB
T ss_pred             CHHHHHHHhccCCeEEEEEEcCCC---chHHHHHHHHHHhCc-CceEEEEC---CHHHHHHcCCCC-CeEEEeccCCccc
Confidence            456778888888999999997643   335678999999985 68888876   567899999976 999999953 344


Q ss_pred             EEeeCCCCHHHHHHHHHhHhCCCcccccC
Q 015368          141 FQFFGERTRDVISAWVREKMTLGTYSITT  169 (408)
Q Consensus       141 ~~~~g~~~~~~l~~~i~~~~~~~~~~i~~  169 (408)
                      ..|.|..+.+.|.+||..+.-|.+.+++.
T Consensus        79 ~~~~~~~~~~~l~~fi~~~~~PlV~e~~~  107 (110)
T d1bjxa_          79 NNFEGEVTKENLLDFIKHNQLPLVIEFTE  107 (110)
T ss_dssp             CCCCSCCCHHHHHHHHHHHSSCCCSSCCC
T ss_pred             cccCCCCCHHHHHHHHHHcCcCcEEecCC
Confidence            55788999999999999999999998864

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.8e-05  Score=64.97  Aligned_cols=88  Identities=13%  Similarity=0.063  Sum_probs=67.8

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc-------------------------------cHh
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL-------------------------------EKD  118 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~-------------------------------~~~  118 (408)
                      +++++++.|| +.||+.|..++..+.+..++++. ++.++.|.+|.                               +.+
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~  105 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRE  105 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCH
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcccH
Confidence            4578888888 78999999999999999999988 88888888753                               346


Q ss_pred             HHHHcCCC------------cCcEEEEEe-CCeEeEEeeC----CCCHHHHHHHHHhH
Q 015368          119 LAKEYNIL------------AYPTLYLFV-AGVRQFQFFG----ERTRDVISAWVREK  159 (408)
Q Consensus       119 ~~~~~~i~------------~~Pt~~~~~-~g~~~~~~~g----~~~~~~l~~~i~~~  159 (408)
                      ++++||+-            ..+++++++ +|.+......    .++.+++.+-|+..
T Consensus       106 va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         106 LAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  163 (220)
T ss_dssp             HHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHH
Confidence            78889875            357899998 8866544332    35778887766543

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.13  E-value=3.3e-06  Score=61.85  Aligned_cols=103  Identities=10%  Similarity=0.153  Sum_probs=77.7

Q ss_pred             CceEeeccccccccccC--CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCC
Q 015368          266 PLVVTLTIHNAQFVFQD--PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSG  341 (408)
Q Consensus       266 p~v~~lt~~~~~~~~~~--~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~  341 (408)
                      .-+.+++.+++......  ..++++ ++.+|+. |+...+.|.++|+++.+    +.|+.+|++..  ++.+++.||+..
T Consensus         6 g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~----v~~~~vd~~~~--~~~l~~~~~V~~   79 (112)
T d1f9ma_           6 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE--NKTLAKELGIRV   79 (112)
T ss_dssp             TSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSST--THHHHHHHCCSS
T ss_pred             eeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc----ceeeccccccc--chhhHhheeecc
Confidence            45788999999987754  236665 5566776 89999999999999976    67999998643  457889999954


Q ss_pred             CCCcEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          342 NAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       342 ~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                        .|.++++..+.....+.|. +++.+.++|+..++
T Consensus        80 --~Pt~~~~k~G~~v~~~~G~-~~~~l~e~i~~~~~  112 (112)
T d1f9ma_          80 --VPTFKILKENSVVGEVTGA-KYDKLLEAIQAARS  112 (112)
T ss_dssp             --SSEEEEEETTEEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             --CCEEEEEECCEEEEEEeCC-CHHHHHHHHHHccC
Confidence              6888888643334456674 77899999988753

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.99  E-value=9.1e-06  Score=56.11  Aligned_cols=80  Identities=15%  Similarity=0.123  Sum_probs=64.3

Q ss_pred             EEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCCCCC
Q 015368          286 QLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGELT  364 (408)
Q Consensus       286 ~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~~  364 (408)
                      +.+|+.+|+. |+...+.++++|.++.++   +.|+.+|++.   ++.+++.||+..  .|.+++ +..+   .+.|..+
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~---~~~l~~~~~V~~--~Pt~~~-~~~~---~~~G~~~   72 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMV---DREKAIEYGLMA--VPAIAI-NGVV---RFVGAPS   72 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTT---CGGGGGGTCSSC--SSEEEE-TTTE---EEECSSC
T ss_pred             EEEEECCCCcchHHHHHHHhhhccccccc---cccccccccc---chhhHHhcCceE--eCEEEE-CCcE---EEEcCCC
Confidence            3456678887 999999999999999998   9999999876   458899999954  688766 3222   2467889


Q ss_pred             hHHHHHHHHHHhc
Q 015368          365 LSSIKSFGEEFLE  377 (408)
Q Consensus       365 ~~~i~~Fi~~~~~  377 (408)
                      .++|.+||++.++
T Consensus        73 ~~~l~~~i~~~l~   85 (85)
T d1nhoa_          73 REELFEAINDEME   85 (85)
T ss_dssp             CHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhhC
Confidence            9999999998753

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.97  E-value=1.4e-05  Score=57.88  Aligned_cols=99  Identities=14%  Similarity=0.077  Sum_probs=71.9

Q ss_pred             eccccccccccCCccE-EE-EEeeCCC-chHHHHHHHHHHHHh----cCCcceEEEEEEEcCCcccccchhhhccCCCCC
Q 015368          271 LTIHNAQFVFQDPRKQ-LW-LFAPAYG-SDKVILTFEEVAKAL----KGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNA  343 (408)
Q Consensus       271 lt~~~~~~~~~~~~~~-~i-~f~~~~~-~~~~~~~~~~vA~~~----~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~  343 (408)
                      |+.++...+-....++ ++ ++.+|+. |+...+.+.++|.+.    .++   +.+..+|++.   .+++++.||+..  
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~---v~~~~id~~~---~~~l~~~~~V~~--   73 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGK---ILGDMVEAIE---YPEWADQYNVMA--   73 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCC---EEEEEEEGGG---CHHHHHHTTCCS--
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCc---EEEEEecccc---cccccccccccc--
Confidence            3444444444444443 33 5577887 999999999998763    345   9999999876   458899999954  


Q ss_pred             CcEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          344 PRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       344 ~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                      .|.++++..+.....+.|..+.+++.+||.+.++
T Consensus        74 vPTi~i~~~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          74 VPKIVIQVNGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             SCEEEEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ceEEEEEeCCeEEEEEECCCCHHHHHHHHHHhhC
Confidence            6788776544455667899999999999998764

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=1.3e-05  Score=63.09  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=63.3

Q ss_pred             CcEEcChhhHHHHHcCCCcEEEEEecCCCh-hHHhhhHHHHHHHHHhcC----CcEEEEEeCcccH--------------
Q 015368           57 DVVSLNGKNFSEFMGKNRNVMVMFYANWCY-WSKKLAPEFAAAAKMLKG----EADLVMVDAYLEK--------------  117 (408)
Q Consensus        57 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~----~v~~~~v~~~~~~--------------  117 (408)
                      .+.+.++++++..--+||++||.||.+||+ .|..+...+..+.+.+..    .+.+..+..+...              
T Consensus        10 ~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (169)
T d2b7ka1          10 HLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFH   89 (169)
T ss_dssp             EEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSC
T ss_pred             EEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhcccc
Confidence            455666666654445789999999999996 555555555555544432    4555554432210              


Q ss_pred             --------------hHHH----------------HcCCCcCcEEEEEe-CCeEeEEeeCCCCHHHHHHHHH
Q 015368          118 --------------DLAK----------------EYNILAYPTLYLFV-AGVRQFQFFGERTRDVISAWVR  157 (408)
Q Consensus       118 --------------~~~~----------------~~~i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~  157 (408)
                                    ....                .+.+.+.|++++++ +|+++..|.+..+.+.+.+-|.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~  160 (169)
T d2b7ka1          90 PSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIV  160 (169)
T ss_dssp             TTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHHH
T ss_pred             ccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHHH
Confidence                          1111                23466789999999 9988888888777765444333

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=1.7e-05  Score=59.57  Aligned_cols=109  Identities=9%  Similarity=0.046  Sum_probs=80.2

Q ss_pred             HHHHHHHhHhCCCcccccChhHHHHHhccCC--eEEEEEecCCCCc---CHHHHHHHh-ccCCc-eeEEEe---cCHhHH
Q 015368          151 VISAWVREKMTLGTYSITTTDEAERILTVES--KLVLGFLHDLEGM---ESEELAAAS-KLHSD-VNFYQT---TSADVA  220 (408)
Q Consensus       151 ~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~--~~vi~f~~~~~~~---~~~~~~~~a-~~~~~-~~f~~~---~~~~l~  220 (408)
                      .+...+++.+......+ +.++++.++....  .+++.|.++||.+   ....+..++ ++.+. +.++.+   .+.+++
T Consensus         6 ~~~~~~~~~~~~g~~~~-~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~~la   84 (132)
T d2hfda1           6 PFDALWQRMLARGWTPV-SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIG   84 (132)
T ss_dssp             HHHHHHHHHHTTTCEEE-CHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHHHHH
T ss_pred             cchHHHHHHHHcCCccc-ccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCHHHH
Confidence            34555667776666666 6789999887654  3444467788876   667788877 55554 556665   467899


Q ss_pred             hhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcCC
Q 015368          221 EFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHTK  264 (408)
Q Consensus       221 ~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~~  264 (408)
                      ++|++.   ++|++++|+.+ .....+.|..+.+++.+||+...
T Consensus        85 ~~~~V~---~~PT~~~~~~G-~~v~~~~G~~~~~~l~~~i~~ll  124 (132)
T d2hfda1          85 DRFGVF---RFPATLVFTGG-NYRGVLNGIHPWAELINLMRGLV  124 (132)
T ss_dssp             HHHTCC---SCCEEEEEETT-EEEEEECCCSCHHHHHHHHHHHH
T ss_pred             HhhccC---cceeEEEEEcC-cEeeeecCCCCHHHHHHHHHHHh
Confidence            999999   59999999765 35678899999999999997543

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.89  E-value=1.5e-05  Score=58.77  Aligned_cols=102  Identities=6%  Similarity=0.028  Sum_probs=67.8

Q ss_pred             eEeeccccccccccCCccEEEE--Ee-eCCC-chHHHHHHHHHHHHhcC-CcceEEEEEEEcCCcccccchhhhccCCCC
Q 015368          268 VVTLTIHNAQFVFQDPRKQLWL--FA-PAYG-SDKVILTFEEVAKALKG-KVNMLLHVYVEMNSEGVGRRVSQEFGVSGN  342 (408)
Q Consensus       268 v~~lt~~~~~~~~~~~~~~~i~--f~-~~~~-~~~~~~~~~~vA~~~~~-~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~  342 (408)
                      +..++..++..........+++  |. .|+. |......+.++++++.+ +   +.++.+|++.   ++.+++.||+.. 
T Consensus        13 ~~~v~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~---~~~~~Vd~d~---~~~l~~~~~V~~-   85 (119)
T d2es7a1          13 WQPVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD---WQVAVADLEQ---SEAIGDRFNVRR-   85 (119)
T ss_dssp             CEECCCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSC---CEEEEECHHH---HHHHHHTTTCCS-
T ss_pred             CceecccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCc---eEEEEEECCC---CHHHHHhcCcCc-
Confidence            3456777777666554422333  32 4555 99999999999999987 6   9999999876   458999999954 


Q ss_pred             CCcEEEEEccCCccccCCCCCChHHHHHHHHHHhc
Q 015368          343 APRVIAYSARDAKKYVLNGELTLSSIKSFGEEFLE  377 (408)
Q Consensus       343 ~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~~~  377 (408)
                       .|.++++..+.....+.|..+.+++.++|+.+++
T Consensus        86 -~Pt~~~~~~G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          86 -FPATLVFTDGKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             -SSEEEEESCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             -ceEEEEEEcCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence             6888888655555668899999999999998874

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.2e-05  Score=59.36  Aligned_cols=75  Identities=13%  Similarity=0.221  Sum_probs=59.9

Q ss_pred             cccccChhHHHHHhcc--CCeEEEEEecCCCCcC---HHHHHHHh-ccCCceeEEEe---cCHhHHhhcCCCCCCCCCeE
Q 015368          164 TYSITTTDEAERILTV--ESKLVLGFLHDLEGME---SEELAAAS-KLHSDVNFYQT---TSADVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       164 ~~~i~~~~~~~~~~~~--~~~~vi~f~~~~~~~~---~~~~~~~a-~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l  234 (408)
                      +.+|.|..++++.+..  ++.++|.|+++||.++   .+.+..++ ++.+.+.|+.+   .+++++++|+|.   +.|++
T Consensus         4 l~~l~s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~~~~I~---~~PT~   80 (137)
T d1qgva_           4 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELY---DPCTV   80 (137)
T ss_dssp             SCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSC---SSCEE
T ss_pred             ccccCCHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhhhcCee---eEEEE
Confidence            4577899999999864  4588888999999984   45566766 66777888876   567899999999   69999


Q ss_pred             EEeecCC
Q 015368          235 IFLHLEA  241 (408)
Q Consensus       235 ~~~~~~~  241 (408)
                      ++|+++.
T Consensus        81 ~~f~~g~   87 (137)
T d1qgva_          81 MFFFRNK   87 (137)
T ss_dssp             EEEETTE
T ss_pred             EEEeCCc
Confidence            9998764

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.83  E-value=4.2e-05  Score=52.59  Aligned_cols=80  Identities=18%  Similarity=0.204  Sum_probs=63.7

Q ss_pred             cEEEEEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccccCCCCC
Q 015368          285 KQLWLFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKYVLNGEL  363 (408)
Q Consensus       285 ~~~i~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y~~~~~~  363 (408)
                      .+++++++|+. |+...+.+.+++.++.+.   +.+..+|++.   ++.+++.||+..  .|.+++.. +++   +-|..
T Consensus         5 ~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~---~~~la~~~~V~~--~Pt~~i~~-~g~---~~G~~   72 (85)
T d1fo5a_           5 KIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVME---NPQKAMEYGIMA--VPTIVING-DVE---FIGAP   72 (85)
T ss_dssp             EEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSS---SCCTTTSTTTCC--SSEEEETT-EEE---CCSSS
T ss_pred             EEEEEECCCCcChHhhhhhccccccccccc---cccccccccc---cccccccCCceE--eeEEEEEC-CcE---EECCC
Confidence            34556788887 999999999999999988   9999999876   458899999954  68877654 332   35778


Q ss_pred             ChHHHHHHHHHHh
Q 015368          364 TLSSIKSFGEEFL  376 (408)
Q Consensus       364 ~~~~i~~Fi~~~~  376 (408)
                      +.++|.+||++.+
T Consensus        73 ~~~~l~~~i~~~L   85 (85)
T d1fo5a_          73 TKEALVEAIKKRL   85 (85)
T ss_dssp             SSHHHHHHHHHHC
T ss_pred             CHHHHHHHHHhcC
Confidence            8999999999864

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.78  E-value=0.00012  Score=51.79  Aligned_cols=91  Identities=12%  Similarity=0.146  Sum_probs=72.1

Q ss_pred             hhhHHHHHc-CCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCC-eEe
Q 015368           63 GKNFSEFMG-KNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAG-VRQ  140 (408)
Q Consensus        63 ~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g-~~~  140 (408)
                      .++++..+. ++.+++|-|+.+--..   ....|.++|+.+++++.|+.+.   +.++++++|+. .|++++|++= +..
T Consensus         7 ~~e~~~F~~~~d~v~VvGfF~~~~~~---~~~~F~~~A~~~rd~~~F~~t~---d~~va~~~~v~-~~~vvlfr~fde~~   79 (102)
T d1a8ya2           7 ERELQAFENIEDEIKLIGYFKNKDSE---HYKAFKEAAEEFHPYIPFFATF---DSKVAKKLTLK-LNEIDFYEAFMEEP   79 (102)
T ss_dssp             HHHHHHHTTCCSSCEEEEECSSTTCH---HHHHHHHHHHHHTTTSCEEEEC---CHHHHHHHCCC-TTCEEEECTTCSSE
T ss_pred             HHHHHHHhccCCCEEEEEEECCCCcH---HHHHHHHHHHHcCCCceEEEEC---CHHHHHHcCCC-CCCEEEeeecCCCc
Confidence            456777775 5678999998764333   5678999999998899999876   78899999996 7999999822 245


Q ss_pred             EEeeCC-CCHHHHHHHHHhHh
Q 015368          141 FQFFGE-RTRDVISAWVREKM  160 (408)
Q Consensus       141 ~~~~g~-~~~~~l~~~i~~~~  160 (408)
                      ..|.|. .+.+.|.+||+++-
T Consensus        80 ~~~~~~~~t~~~i~~Fi~~n~  100 (102)
T d1a8ya2          80 VTIPDKPNSEEEIVNFVEEHR  100 (102)
T ss_dssp             EECSSSSCCHHHHHHHHHHTC
T ss_pred             eecCCCCCCHHHHHHHHHHhc
Confidence            678885 89999999998763

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.78  E-value=9.8e-05  Score=49.12  Aligned_cols=66  Identities=11%  Similarity=0.169  Sum_probs=48.1

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh---HHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD---LAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVIS  153 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~---~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~  153 (408)
                      ++.|..+||++|.+....+++    .  ++.+-.+|++++++   ..+.+|.+++|++++  +|+    +.|..+.+.|.
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~----~--~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~g~----~igGf~~d~l~   70 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR----A--GLAYNTVDISLDDEARDYVMALGYVQAPVVEV--DGE----HWSGFRPERIK   70 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH----T--TCCCEEEETTTCHHHHHHHHHTTCBCCCEEEE--TTE----EEESCCHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHH----c--CCceEEEEccCCHHHHHHHHHhCCCCcCEEEE--CCE----EEeCCCHhHHH
Confidence            567899999999998877654    2  57788888887654   346779999998753  774    34555666665


Q ss_pred             H
Q 015368          154 A  154 (408)
Q Consensus       154 ~  154 (408)
                      +
T Consensus        71 ~   71 (74)
T d1r7ha_          71 Q   71 (74)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.75  E-value=4.5e-05  Score=55.56  Aligned_cols=86  Identities=20%  Similarity=0.365  Sum_probs=65.3

Q ss_pred             CcE-EEEEec-CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--ccHhHHHHcCCCcCcEEEEEeCCeE-eEEeeCCCC
Q 015368           74 RNV-MVMFYA-NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--LEKDLAKEYNILAYPTLYLFVAGVR-QFQFFGERT  148 (408)
Q Consensus        74 ~~~-~v~f~a-~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--~~~~~~~~~~i~~~Pt~~~~~~g~~-~~~~~g~~~  148 (408)
                      +|| ++.|-+ ..|+.|.++...++++++. .+++.+...+.+  ++++++++|+|...|++.+.++|+. -.+|.|-..
T Consensus        22 ~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-Sdki~~~~~~~~~~e~~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP~  100 (119)
T d1a8la1          22 NPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPA  100 (119)
T ss_dssp             SCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCCSEEEESCCC
T ss_pred             CCEEEEEEecCCCchhHHHHHHHHHHHHhh-CCCeEEEEeccCcchhhhHHHhhccccCceEEEecCCcccceEEEeccC
Confidence            455 444443 5799999999988888765 446777666654  4678999999999999999998743 378999888


Q ss_pred             HHHHHHHHHhHh
Q 015368          149 RDVISAWVREKM  160 (408)
Q Consensus       149 ~~~l~~~i~~~~  160 (408)
                      -.++..+|...+
T Consensus       101 GhEf~SlilaIl  112 (119)
T d1a8la1         101 GHEFAAFLEDIV  112 (119)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             chhHHHHHHHHH
Confidence            778887776543

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=97.74  E-value=8.9e-05  Score=60.49  Aligned_cols=88  Identities=10%  Similarity=0.118  Sum_probs=68.0

Q ss_pred             CCCcEEEEEe-cCCChhHHhhhHHHHHHHHHhcC-CcEEEEEeCcc----------------------------cHhHHH
Q 015368           72 KNRNVMVMFY-ANWCYWSKKLAPEFAAAAKMLKG-EADLVMVDAYL----------------------------EKDLAK  121 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~-~v~~~~v~~~~----------------------------~~~~~~  121 (408)
                      +++++++.|| +.||+.|-.++..|.+.+++++. ++.++.|.+|.                            +.++++
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va~  108 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELAN  108 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHHH
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHHH
Confidence            6789999999 89999999999999999999988 89999998863                            235788


Q ss_pred             HcCCCc------------CcEEEEEe-CCeEeEE--ee--CCCCHHHHHHHHHhH
Q 015368          122 EYNILA------------YPTLYLFV-AGVRQFQ--FF--GERTRDVISAWVREK  159 (408)
Q Consensus       122 ~~~i~~------------~Pt~~~~~-~g~~~~~--~~--g~~~~~~l~~~i~~~  159 (408)
                      .||+-.            .-++++++ +|.+...  |.  -.++.+++.+.|+..
T Consensus       109 ~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_         109 KLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  163 (219)
T ss_dssp             HHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHH
Confidence            888731            24788888 8866433  22  246888888877543

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=9e-05  Score=54.33  Aligned_cols=97  Identities=13%  Similarity=0.142  Sum_probs=67.4

Q ss_pred             CcccccChhHHHHHhc--cCCeEEEEEecCCCCcCHHHHHH------HhccCCceeEEEe-------cCHhHHhhcCCCC
Q 015368          163 GTYSITTTDEAERILT--VESKLVLGFLHDLEGMESEELAA------ASKLHSDVNFYQT-------TSADVAEFFHIHP  227 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~--~~~~~vi~f~~~~~~~~~~~~~~------~a~~~~~~~f~~~-------~~~~l~~~~~i~~  227 (408)
                      +...|.+.++++..+.  .+++++|.|+++||.++...-..      ..+...++.+..+       .+.++++++++. 
T Consensus         3 ~f~~i~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-   81 (117)
T d2fwha1           3 NFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVL-   81 (117)
T ss_dssp             CCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCC-
T ss_pred             CceEecCHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehh-
Confidence            3456778888887774  35689999999999986554322      2223334433322       345688999998 


Q ss_pred             CCCCCeEEEeecCCCcc--cccCCcCCHHHHHHHHhc
Q 015368          228 KSKRPALIFLHLEAGKA--TPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       228 ~~~~p~l~~~~~~~~~~--~~y~g~~~~~~i~~fi~~  262 (408)
                        ++|+++++..++...  ..+.|..+.+++.+||++
T Consensus        82 --~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          82 --GLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             --SSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             --hceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence              699999997654333  356799999999999975

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.59  E-value=0.00027  Score=46.70  Aligned_cols=72  Identities=14%  Similarity=0.172  Sum_probs=53.6

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWV  156 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i  156 (408)
                      +..|..++|+.|.+....+.+   ..  .+.+-.||+++++++.++|+.+ +|.+. +++|..   ..-+.+.+++.+|+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~---~~--~~~~~~vdI~~d~~l~~~y~~~-IPVl~-~~~~~~---l~w~fd~~~l~~~L   71 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ---AR--AGAFFSVFIDDDAALESAYGLR-VPVLR-DPMGRE---LDWPFDAPRLRAWL   71 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH---TT--CCCEEEEECTTCHHHHHHHTTT-CSEEE-CTTCCE---EESCCCHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh---cc--CCcEEEEEccCCHHHHHHhCCe-eeEEE-ECCeeE---EcCccCHHHHHHHH
Confidence            567899999999887654432   22  5889999999999999999977 89664 344422   22356999999998


Q ss_pred             Hh
Q 015368          157 RE  158 (408)
Q Consensus       157 ~~  158 (408)
                      ..
T Consensus        72 ~~   73 (75)
T d1ttza_          72 DA   73 (75)
T ss_dssp             HT
T ss_pred             hc
Confidence            63

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=8.5e-05  Score=50.94  Aligned_cols=75  Identities=19%  Similarity=0.313  Sum_probs=54.5

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH----hHHHHc--CCCcCcEEEEEeCCeEeEEeeCCCCHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK----DLAKEY--NILAYPTLYLFVAGVRQFQFFGERTRD  150 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~----~~~~~~--~i~~~Pt~~~~~~g~~~~~~~g~~~~~  150 (408)
                      +|.|..+||++|.+....+.++...+. .+.+..+|.+.++    .+.+..  +++++|.+++  +|+    +.|..  +
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi--~g~----~IGG~--~   73 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERD-DFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFV--DQQ----HIGGY--T   73 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS-SCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEE--TTE----EEESS--H
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCC-CceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEE--CCE----EEECH--H
Confidence            567899999999999999999988877 5888888876543    333333  4567999754  774    44554  4


Q ss_pred             HHHHHHHhHh
Q 015368          151 VISAWVREKM  160 (408)
Q Consensus       151 ~l~~~i~~~~  160 (408)
                      ++.+++++.+
T Consensus        74 el~~~~~~~~   83 (85)
T d1egoa_          74 DFAAWVKENL   83 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            6777777654

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.55  E-value=0.00028  Score=49.48  Aligned_cols=75  Identities=12%  Similarity=-0.051  Sum_probs=56.9

Q ss_pred             CCeEEEEEecCCCCcC---HHHHHHHhccCCceeEEEe---cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCH
Q 015368          180 ESKLVLGFLHDLEGME---SEELAAASKLHSDVNFYQT---TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTR  253 (408)
Q Consensus       180 ~~~~vi~f~~~~~~~~---~~~~~~~a~~~~~~~f~~~---~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~  253 (408)
                      .+..++.|+++||.++   .+.+..++....++.+..+   .+++++++|+|.   ++|++++  ++  . ..|.|..+.
T Consensus        15 ~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~~~~I~---~vPt~~~--ng--~-~~~~G~~~~   86 (96)
T d1hyua4          15 GDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEITERNVM---GVPAVFV--NG--K-EFGQGRMTL   86 (96)
T ss_dssp             SCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHHHTTCC---SSSEEEE--TT--E-EEEESCCCH
T ss_pred             CCeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHhhcccc---cccEEEE--CC--E-EEEecCCCH
Confidence            4556777999999985   4456667766677888765   667899999999   5999864  22  2 357899999


Q ss_pred             HHHHHHHhc
Q 015368          254 LAIANFVTH  262 (408)
Q Consensus       254 ~~i~~fi~~  262 (408)
                      ++|.++|..
T Consensus        87 ~~l~~~les   95 (96)
T d1hyua4          87 TEIVAKVDT   95 (96)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHhC
Confidence            999998853

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.54  E-value=0.00027  Score=46.53  Aligned_cols=72  Identities=19%  Similarity=0.280  Sum_probs=56.2

Q ss_pred             EEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCC-CCHHHHHHHH
Q 015368           78 VMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGE-RTRDVISAWV  156 (408)
Q Consensus        78 v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~~l~~~i  156 (408)
                      |....+.|+.|.+.....++++++++-...+..|  ++-.++. +|||.++|.+++  ||+.  .+.|. .+.+++.+||
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv--~d~~ei~-~ygVmstPalvI--dg~v--v~~G~vPs~~ei~~~L   76 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKI--KEMDQIL-EAGLTALPGLAV--DGEL--KIMGRVASKEEIKKIL   76 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEE--CSHHHHH-HHTCSSSSCEEE--TTEE--EECSSCCCHHHHHHHC
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEe--CCHHHHH-HcCCcCCCEEEE--CCEE--EEEecCCCHHHHHHHh
Confidence            4456899999999999999999988656666666  4555665 699999999865  7743  45675 4899999886

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=0.00011  Score=58.92  Aligned_cols=42  Identities=7%  Similarity=0.181  Sum_probs=30.6

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHHHHHH---HhcCCcEEEEEeC
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFAAAAK---MLKGEADLVMVDA  113 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~---~~~~~v~~~~v~~  113 (408)
                      .+++.+|.|+.-.||||+.+.|.+..+.+   ...+.+.+.....
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~   61 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV   61 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence            35678999999999999999998755444   3344566666653

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00023  Score=47.50  Aligned_cols=64  Identities=11%  Similarity=0.186  Sum_probs=46.5

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH---HHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHH
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL---AKEYNILAYPTLYLFVAGVRQFQFFGERTRDVI  152 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~---~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l  152 (408)
                      ++.|..+||++|.+....+++.      ++.+-.+|++++++.   .+..|.+++|++++  +|+.    .|....+.|
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~------~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~----i~Gf~~d~i   69 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR------GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLS----WSGFRPDMI   69 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT------TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEE----EESCCHHHH
T ss_pred             EEEEeCCCCccHHHHHHHHHhc------CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEE----EECCCHHHH
Confidence            5678899999999988777542      578888899887654   34568999999765  6633    344556655

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00026  Score=51.91  Aligned_cols=91  Identities=10%  Similarity=0.072  Sum_probs=63.5

Q ss_pred             cccChhHHHHHhcc--CCeEEEEEecC-------CCCcC---HHHHHHHh-ccCCceeEEEec----------CHhHHhh
Q 015368          166 SITTTDEAERILTV--ESKLVLGFLHD-------LEGME---SEELAAAS-KLHSDVNFYQTT----------SADVAEF  222 (408)
Q Consensus       166 ~i~~~~~~~~~~~~--~~~~vi~f~~~-------~~~~~---~~~~~~~a-~~~~~~~f~~~~----------~~~l~~~  222 (408)
                      .+.+.+++.+.+..  ++.++|.|+++       ||+++   .+.+..++ .+.+++.|+.+.          +..++++
T Consensus         5 ~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~   84 (119)
T d1woua_           5 SVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKN   84 (119)
T ss_dssp             EEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHH
T ss_pred             EeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHh
Confidence            46688999988864  34777888875       99884   44566666 566778887753          3458899


Q ss_pred             cCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHh
Q 015368          223 FHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVT  261 (408)
Q Consensus       223 ~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~  261 (408)
                      |++.   +.|++++|+.+. +...+.+ .+.+.+..|++
T Consensus        85 ~~V~---~iPT~i~~~~g~-~l~~~~~-~~~~ll~~~~~  118 (119)
T d1woua_          85 LKVT---AVPTLLKYGTPQ-KLVESEC-LQANLVEMLFS  118 (119)
T ss_dssp             HCCC---SSSEEEETTSSC-EEEGGGG-GCHHHHHHHHH
T ss_pred             CCeE---EEEEEEEEECCe-EEeeeec-CCHHHHHHHhc
Confidence            9999   699999998654 3333333 35566777765

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.05  E-value=0.00026  Score=50.53  Aligned_cols=67  Identities=12%  Similarity=0.182  Sum_probs=45.2

Q ss_pred             HHHHcCCCcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh-----HHHHcCCCcCcEEEEEeCCe
Q 015368           67 SEFMGKNRNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD-----LAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        67 ~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~-----~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      ++.+.+++  +|.|..+||++|.+....+.++.-.+. .+.+..+|.+.+..     +.+..|.+.+|++++  +|+
T Consensus         6 ~~~i~~~~--Vviysk~~Cp~C~~ak~ll~~~~~~~~-~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~   77 (105)
T d1ktea_           6 NSKIQPGK--VVVFIKPTCPFCRKTQELLSQLPFKEG-LLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKE   77 (105)
T ss_dssp             HHHCCTTC--EEEEECSSCHHHHHHHHHHHHSCBCTT-SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTE
T ss_pred             HHHhccCC--EEEEECCCCchHHHHHHHHHHhCCccc-eeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCE
Confidence            34455555  567899999999999887776543322 46677777666543     334457888998854  774

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.96  E-value=0.0015  Score=53.18  Aligned_cols=99  Identities=12%  Similarity=0.103  Sum_probs=69.7

Q ss_pred             CcccccChhHHHHHhcc---CCeEEEEEecCCCCc---CHHHHHHHhccCCceeEEEecCH--hHHhhcCCCCCCCCCeE
Q 015368          163 GTYSITTTDEAERILTV---ESKLVLGFLHDLEGM---ESEELAAASKLHSDVNFYQTTSA--DVAEFFHIHPKSKRPAL  234 (408)
Q Consensus       163 ~~~~i~~~~~~~~~~~~---~~~~vi~f~~~~~~~---~~~~~~~~a~~~~~~~f~~~~~~--~l~~~~~i~~~~~~p~l  234 (408)
                      .+.+|.+.+++...+..   +..++|-||.+||..   ..+.+..+|.....+.|..+...  .+...|++.   +.|++
T Consensus       100 ~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~~~~~~~i~---~lPtl  176 (217)
T d2trcp_         100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSD---VLPTL  176 (217)
T ss_dssp             SEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHTCSTTSCGG---GCSEE
T ss_pred             eEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccccchhHHhCCCC---CCCeE
Confidence            46778887877777743   235677799999987   45567788877788999987433  356788888   59999


Q ss_pred             EEeecCCCc--c---cccCC-cCCHHHHHHHHhcCC
Q 015368          235 IFLHLEAGK--A---TPFRH-QFTRLAIANFVTHTK  264 (408)
Q Consensus       235 ~~~~~~~~~--~---~~y~g-~~~~~~i~~fi~~~~  264 (408)
                      ++|+.+...  .   ....| +++.++|..||.++-
T Consensus       177 ~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~g  212 (217)
T d2trcp_         177 LVYKGGELISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             EEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             EEEECCEEEEEEECccccccccCCHHHHHHHHHHcC
Confidence            999976411  1   11222 477899999987653

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.75  E-value=0.0024  Score=41.97  Aligned_cols=54  Identities=9%  Similarity=0.138  Sum_probs=38.8

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccH---hHHHHcCCCcCcEEEEEeCCe
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEK---DLAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~---~~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      ++.|..+||++|++....+++.      ++.+..++++++.   .+.+..+..++|.+++  +|+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~------~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i~i--~g~   63 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK------GLSFEEIILGHDATIVSVRAVSGRTTVPQVFI--GGK   63 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEETTTTCCHHHHHHHTCCSSSCEEEE--TTE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc------CCCeEEEEccCcHHHHHHHHHhCCccCCEEEE--CCE
Confidence            5678999999999988776653      4666677766543   3445678889999743  674

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.74  E-value=0.0016  Score=43.86  Aligned_cols=54  Identities=6%  Similarity=0.166  Sum_probs=39.3

Q ss_pred             EEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHh----HHHHcCCCcCcEEEEEeCCe
Q 015368           77 MVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKD----LAKEYNILAYPTLYLFVAGV  138 (408)
Q Consensus        77 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~  138 (408)
                      +..|..+||++|.+....+++.      ++.+..+|++++++    +.+..|.+++|.+++  +|+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~------~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i--~~~   60 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK------GVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI--DAQ   60 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH------TCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEE--TTE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc------CCCeEEEeccchHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence            4557889999999987666442      57778888877644    345568899998753  674

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.029  Score=42.08  Aligned_cols=90  Identities=17%  Similarity=0.116  Sum_probs=61.8

Q ss_pred             CccEEEEEe-eCCC-chHHHHH-H--HHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEcc-CCcc
Q 015368          283 PRKQLWLFA-PAYG-SDKVILT-F--EEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSAR-DAKK  356 (408)
Q Consensus       283 ~~~~~i~f~-~~~~-~~~~~~~-~--~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~-~~~~  356 (408)
                      ++++++.|. ++|. |+..... |  .++.+.+..+   +.++.+|.++.+ +..+++.|++..  .|.+++++. .|+.
T Consensus        42 ~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e-~~~~~~~y~v~~--~Pti~~idp~~ge~  115 (147)
T d2dlxa1          42 NKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEE-GQRYIQFYKLGD--FPYVSILDPRTGQK  115 (147)
T ss_dssp             TCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHH-HHHHHHHHTCCS--SSEEEEECTTTCCC
T ss_pred             CCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchh-hhhhhhheecCc--eeEEEEEeCCCCeE
Confidence            335555444 5554 6555442 2  3566667777   999999987766 678889999954  789999986 5666


Q ss_pred             ccCCCCCChHHHHHHHHHHhcC
Q 015368          357 YVLNGELTLSSIKSFGEEFLED  378 (408)
Q Consensus       357 y~~~~~~~~~~i~~Fi~~~~~g  378 (408)
                      ...-+.++++++.+.+++++..
T Consensus       116 v~~~~~~~~~~fl~~L~~fl~~  137 (147)
T d2dlxa1         116 LVEWHQLDVSSFLDQVTGFLGE  137 (147)
T ss_dssp             CEEESSCCHHHHHHHHHHHHHH
T ss_pred             ecccCCCCHHHHHHHHHHHHhh
Confidence            5545567888877777777653

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=94.93  E-value=0.046  Score=40.60  Aligned_cols=46  Identities=7%  Similarity=0.159  Sum_probs=37.0

Q ss_pred             cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHHHHHHHhcC
Q 015368          215 TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLAIANFVTHT  263 (408)
Q Consensus       215 ~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~~  263 (408)
                      .+.++++.|++.   ++|+.+++.+.+.-...+.|..+.+.+.+++++.
T Consensus        94 ~~~~~~~~~~v~---~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~  139 (143)
T d2fy6a1          94 NGGTIAQSLNIS---VYPSWALIGKDGDVQRIVKGSINEAQALALIRDP  139 (143)
T ss_dssp             TTCHHHHHTTCC---SSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCT
T ss_pred             cchHHHHHcCCC---ccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHH
Confidence            455678888887   6999999987765566778999999999999864

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.049  Score=40.08  Aligned_cols=80  Identities=5%  Similarity=-0.101  Sum_probs=52.6

Q ss_pred             cCCeEEEEEecCCCCcCHHHHHHHh---ccCCcee------------------------EEEecCHhHHhhcCCCCCCCC
Q 015368          179 VESKLVLGFLHDLEGMESEELAAAS---KLHSDVN------------------------FYQTTSADVAEFFHIHPKSKR  231 (408)
Q Consensus       179 ~~~~~vi~f~~~~~~~~~~~~~~~a---~~~~~~~------------------------f~~~~~~~l~~~~~i~~~~~~  231 (408)
                      .+++++|.|+++||.++......+.   +..-.+.                        .....+..+...|++.   +.
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~---~~   95 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY---GA   95 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCC---SB
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhhhhhhhcccccccchhhhHHHHHHcCCccceeecccchhHHHhcccC---Cc
Confidence            5678888999999998655444332   2111111                        1112344577888887   68


Q ss_pred             CeEEEeecCCCcccccCCcCCHHHHHHHHh
Q 015368          232 PALIFLHLEAGKATPFRHQFTRLAIANFVT  261 (408)
Q Consensus       232 p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~  261 (408)
                      |+.+++..++.-...+.|..+.+++.+.|+
T Consensus        96 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~  125 (136)
T d1z5ye1          96 PETFLIDGNGIIRYRHAGDLNPRVWEEEIK  125 (136)
T ss_dssp             SEEEEECTTSCEEEEEESCCCHHHHHHHTH
T ss_pred             ceEEEEcCCCEEEEEEEcCCCHHHHHHHHH
Confidence            999999877655667788888777766554

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=94.48  E-value=0.027  Score=42.04  Aligned_cols=80  Identities=6%  Similarity=-0.042  Sum_probs=53.7

Q ss_pred             CCeEEEEEecCCCCcCHHHHHHHhccCC--cee-EE-------------------------EecCHhHHhhcCCCCCCCC
Q 015368          180 ESKLVLGFLHDLEGMESEELAAASKLHS--DVN-FY-------------------------QTTSADVAEFFHIHPKSKR  231 (408)
Q Consensus       180 ~~~~vi~f~~~~~~~~~~~~~~~a~~~~--~~~-f~-------------------------~~~~~~l~~~~~i~~~~~~  231 (408)
                      +++++|.|+..||.++......+.++..  ... .+                         ...+..+.+.|++.   ++
T Consensus        31 gK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~---~~  107 (144)
T d1knga_          31 GKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVY---GV  107 (144)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCC---SS
T ss_pred             CCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCcc---cc
Confidence            4678888999999987666554432222  111 11                         11345678888887   68


Q ss_pred             CeEEEeecCCCcccccCCcCCHHHHHHHHhc
Q 015368          232 PALIFLHLEAGKATPFRHQFTRLAIANFVTH  262 (408)
Q Consensus       232 p~l~~~~~~~~~~~~y~g~~~~~~i~~fi~~  262 (408)
                      |+.+++...+.-...+.|..+.+++.+.|..
T Consensus       108 P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~  138 (144)
T d1knga_         108 PETFVVGREGTIVYKLVGPITPDNLRSVLLP  138 (144)
T ss_dssp             CEEEEECTTSBEEEEEESCCCHHHHHHTHHH
T ss_pred             ceEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence            9999998776555667788888888776653

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.40  E-value=0.048  Score=38.44  Aligned_cols=64  Identities=22%  Similarity=0.374  Sum_probs=43.3

Q ss_pred             hHHHHHcCCCcEEEEEec-----CCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhH----HHHcCCCcCcEEEEEe
Q 015368           65 NFSEFMGKNRNVMVMFYA-----NWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDL----AKEYNILAYPTLYLFV  135 (408)
Q Consensus        65 ~~~~~~~~~~~~~v~f~a-----~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~  135 (408)
                      .++.+++++ +|+| |-.     |.|++|++....|..    +  ++.+..+|+++++++    .+.-+...+|.+++  
T Consensus         7 ~i~~~i~~~-~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~----~--~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi--   76 (109)
T d1wika_           7 GLKVLTNKA-SVML-FMKGNKQEAKCGFSKQILEILNS----T--GVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV--   76 (109)
T ss_dssp             CHHHHHTTS-SEEE-EESSTTTCCCSSTHHHHHHHHHH----T--CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEEC--
T ss_pred             HHHHHHhcC-CEEE-EeCCCCCCCCChHHHHHHHHHHh----c--CCCceEEEecccHHHHHHHHHhcCCCCCCeEEE--
Confidence            355566554 4444 543     889999998876643    3  577888888887654    34457788999864  


Q ss_pred             CCe
Q 015368          136 AGV  138 (408)
Q Consensus       136 ~g~  138 (408)
                      +|+
T Consensus        77 ~g~   79 (109)
T d1wika_          77 RGD   79 (109)
T ss_dssp             SSS
T ss_pred             CCE
Confidence            663

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.78  E-value=0.26  Score=35.93  Aligned_cols=89  Identities=19%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             CccEEEEE-eeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--cc-----------------ccchhhhccCCC
Q 015368          283 PRKQLWLF-APAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--GV-----------------GRRVSQEFGVSG  341 (408)
Q Consensus       283 ~~~~~i~f-~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--~~-----------------~~~l~~~~~i~~  341 (408)
                      +.+.++.| ..+|. |......++++.+++.++  ++.++.++.++.  .+                 ...+.+.||+. 
T Consensus        25 gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~-  101 (137)
T d1st9a_          25 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQ--GVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVS-  101 (137)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG--TEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCC-
T ss_pred             CCEEEEEEeeccccceeeccccccccccccccc--ccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcc-
Confidence            34555544 45555 888888899998888753  277777665332  10                 12333445552 


Q ss_pred             CCCcEEEEEccCCc-cccCCCCCChHHHHHHHHHH
Q 015368          342 NAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       342 ~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~~  375 (408)
                       ..|.+++++.+|+ .|.+.|.++.+.+.++++.+
T Consensus       102 -~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~l  135 (137)
T d1st9a_         102 -PLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  135 (137)
T ss_dssp             -SSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             -ccceEEEECCCCEEEEEEECCCCHHHHHHHHHhh
Confidence             3588889888544 46678989999998888754

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=93.51  E-value=0.69  Score=31.54  Aligned_cols=84  Identities=11%  Similarity=0.200  Sum_probs=62.9

Q ss_pred             CcEEEEEecCCChhHHhhhHHHHHHHHHhcC--CcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHH
Q 015368           74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKG--EADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDV  151 (408)
Q Consensus        74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~  151 (408)
                      ++..+..|.+.-+...+....+.++-+++..  .+.+-.||+.+++++++.++|-.+||++=.... ...++.|..-.++
T Consensus        11 ~~l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~qPelaE~~~IvATPtLIK~~P~-P~q~l~Gs~i~~q   89 (105)
T d1t4za_          11 QPLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQPQLVEYYRLVVTPALVKIGPG-SRQVLSGIDLTDQ   89 (105)
T ss_dssp             CCEEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTCHHHHHHTTCCSSSEEEEEESS-CCEEEESSCHHHH
T ss_pred             CCeEEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccCHhHHhhCCEEeccHhhhcCCC-cceeecChhHHHH
Confidence            3444445555556666666666666655433  589999999999999999999999999877655 5678899888888


Q ss_pred             HHHHHHh
Q 015368          152 ISAWVRE  158 (408)
Q Consensus       152 l~~~i~~  158 (408)
                      +..|.-+
T Consensus        90 l~~w~pr   96 (105)
T d1t4za_          90 LANQLPQ   96 (105)
T ss_dssp             HHHHHHH
T ss_pred             HhhhhhH
Confidence            8888654

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.015  Score=46.01  Aligned_cols=43  Identities=9%  Similarity=0.180  Sum_probs=33.7

Q ss_pred             CCCcEEEEEecCCChhHHhhhHHHH---HHHHHhcCCcEEEEEeCc
Q 015368           72 KNRNVMVMFYANWCYWSKKLAPEFA---AAAKMLKGEADLVMVDAY  114 (408)
Q Consensus        72 ~~~~~~v~f~a~wC~~C~~~~p~~~---~~~~~~~~~v~~~~v~~~  114 (408)
                      .+++.++.|+.-+|+||..+.|.+.   ++.+.+.+++.|..+-+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            4578899999999999999999875   555666667777766553

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.05  E-value=0.091  Score=34.60  Aligned_cols=84  Identities=11%  Similarity=0.130  Sum_probs=57.1

Q ss_pred             hHHHHHhccCC---eEEEEEecCCCCcCHHHHHHHh-ccCCceeEEEecCHhHHhhcCCCCCCCCCeEEEeecCC-Cccc
Q 015368          171 DEAERILTVES---KLVLGFLHDLEGMESEELAAAS-KLHSDVNFYQTTSADVAEFFHIHPKSKRPALIFLHLEA-GKAT  245 (408)
Q Consensus       171 ~~~~~~~~~~~---~~vi~f~~~~~~~~~~~~~~~a-~~~~~~~f~~~~~~~l~~~~~i~~~~~~p~l~~~~~~~-~~~~  245 (408)
                      ++++.++....   +++| ...-.+....+.|.++| .+..++.|..-.+.        .   .-|.|-+|-++. ..++
T Consensus         6 ~dl~~~l~n~t~v~pVVV-~~Gv~d~~fNeTF~~~A~~l~~Dy~Fvs~~~~--------~---~~~kLsV~LP~e~dEPI   73 (98)
T d2b5ea2           6 ADLPAYLANETFVTPVIV-QSGKIDADFNATFYSMANKHFNDYDFVSAENA--------D---DDFKLSIYLPSAMDEPV   73 (98)
T ss_dssp             SCHHHHHHHSCCSSCEEE-EEESCCHHHHHHHHHHHHHTTTTCEEEEEECT--------T---SCCEEEEEETTEEEEEE
T ss_pred             hhhHHHHhcCcccCCEEE-eCCccccchhHHHHHHHHHhhcceEEEeccCC--------C---CCccEEEECCCCCCCCe
Confidence            44666665555   4444 43333456788899988 89999999875432        1   236777777664 3899


Q ss_pred             ccCCcC----CHHHHHHHHhcCCCC
Q 015368          246 PFRHQF----TRLAIANFVTHTKHP  266 (408)
Q Consensus       246 ~y~g~~----~~~~i~~fi~~~~~p  266 (408)
                      .|+|+.    +.+.+.+||+-..+|
T Consensus        74 vf~G~~~~i~~a~~l~~WlkVe~lP   98 (98)
T d2b5ea2          74 VYNGKKADIADADVFEKWLQVEALP   98 (98)
T ss_dssp             ECCSCHHHHTSHHHHHHHHHHHSSC
T ss_pred             EEcCccCCcccHHHHHHHHeeeccC
Confidence            999973    446799999887766

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.00  E-value=0.21  Score=36.20  Aligned_cols=88  Identities=15%  Similarity=0.141  Sum_probs=56.2

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCc--cc------------------ccchhhhccC
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSE--GV------------------GRRVSQEFGV  339 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~--~~------------------~~~l~~~~~i  339 (408)
                      .++++++ ++..||. |....+.+.++++++++.    .++.+...+.  ..                  ...+.+.||+
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~----~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v   99 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEV----TFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGV   99 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTS----EEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTC
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhccc----ccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCC
Confidence            3455555 5677776 899999999999998764    3444443321  10                  1133344444


Q ss_pred             CCCCCcEEEEEccCCccccCCCCCChHHHHHHHHHH
Q 015368          340 SGNAPRVIAYSARDAKKYVLNGELTLSSIKSFGEEF  375 (408)
Q Consensus       340 ~~~~~p~i~i~~~~~~~y~~~~~~~~~~i~~Fi~~~  375 (408)
                      .  ..|..++++.+|+.-...|..+.++|.+.|+.+
T Consensus       100 ~--~~P~~~iiD~~G~i~~~~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         100 T--QQPAYAFVDPHGNVDVVRGRMSQDELTRRVTAL  133 (134)
T ss_dssp             C--SSSEEEEECTTCCEEEEESCCCHHHHHHHHHHH
T ss_pred             C--ccCeEEEECCCCeEEEEECCCCHHHHHHHHHhh
Confidence            2  358888888865533346888999999988764

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=92.61  E-value=0.28  Score=36.01  Aligned_cols=88  Identities=9%  Similarity=0.085  Sum_probs=56.8

Q ss_pred             CCccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCccc------ccc------------------hhh
Q 015368          282 DPRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGV------GRR------------------VSQ  335 (408)
Q Consensus       282 ~~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~------~~~------------------l~~  335 (408)
                      .++++++ ++..+|. |.+..+.++++.++++++   +.++.++......      ...                  +.+
T Consensus        28 ~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~  104 (143)
T d2b5xa1          28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTD  104 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHH
T ss_pred             CCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHH
Confidence            3345554 5566775 888889999999999887   7777665432110      011                  233


Q ss_pred             hccCCCCCCcEEEEEccCCc-cccCCCCCChHHHHHHHHH
Q 015368          336 EFGVSGNAPRVIAYSARDAK-KYVLNGELTLSSIKSFGEE  374 (408)
Q Consensus       336 ~~~i~~~~~p~i~i~~~~~~-~y~~~~~~~~~~i~~Fi~~  374 (408)
                      .|++.  ..|.+++++.+|+ .|...|..+.+.+.+-|+.
T Consensus       105 ~~~v~--~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~  142 (143)
T d2b5xa1         105 AFENE--YVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNR  142 (143)
T ss_dssp             HTCCC--CSSEEEEECTTCBEEEEEESCSTTHHHHHHHHH
T ss_pred             HcCCC--cCCEEEEECCCCEEEEEEECCCCHHHHHHHHHh
Confidence            34442  3588888887444 5667788888888887765

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.73  E-value=0.51  Score=32.22  Aligned_cols=75  Identities=7%  Similarity=0.033  Sum_probs=52.2

Q ss_pred             CeEEEEEecCCCCcCHHHHHHHhccCCceeEEEe-----cCHhHHhhcCCCCCCCCCeEEEeecCCCcccccCCcCCHHH
Q 015368          181 SKLVLGFLHDLEGMESEELAAASKLHSDVNFYQT-----TSADVAEFFHIHPKSKRPALIFLHLEAGKATPFRHQFTRLA  255 (408)
Q Consensus       181 ~~~vi~f~~~~~~~~~~~~~~~a~~~~~~~f~~~-----~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~~y~g~~~~~~  255 (408)
                      -+.++.|..+||..+...-..+.++...+.+-.+     .++++.++|++.    .|.+++  .+  .. ...|.++.+.
T Consensus        16 ~p~i~lft~~~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~~~----VPvl~i--dg--~~-~~~g~~d~~~   86 (100)
T d1wjka_          16 LPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFD----IPVFHL--NG--QF-LMMHRVNTSK   86 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSSSS----CSEEEE--SS--SE-EEESSCCHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHhhhhcceEEEecccccCHHHHHHhccc----CCceee--cC--ce-EEeCCCCHHH
Confidence            3567779999999987776666655555443322     567899999986    697654  22  22 3457889999


Q ss_pred             HHHHHhcCC
Q 015368          256 IANFVTHTK  264 (408)
Q Consensus       256 i~~fi~~~~  264 (408)
                      |.++|++-.
T Consensus        87 L~~~L~~l~   95 (100)
T d1wjka_          87 LEKQLRKLS   95 (100)
T ss_dssp             HHHHHHSSS
T ss_pred             HHHHHHHHh
Confidence            999998644

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.53  E-value=0.92  Score=32.60  Aligned_cols=44  Identities=9%  Similarity=0.178  Sum_probs=30.4

Q ss_pred             cCHhHHhhcCCCCCCCCCeEEEeecCCCccc--ccCCcCCHHHHHHHHh
Q 015368          215 TSADVAEFFHIHPKSKRPALIFLHLEAGKAT--PFRHQFTRLAIANFVT  261 (408)
Q Consensus       215 ~~~~l~~~~~i~~~~~~p~l~~~~~~~~~~~--~y~g~~~~~~i~~fi~  261 (408)
                      .+..+.+.|++.   +.|+.+++..++....  ...|..+.+++.+-|.
T Consensus        87 ~~~~~~~~~~v~---~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~  132 (134)
T d1lu4a_          87 ADGVIWARYNVP---WQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVA  132 (134)
T ss_dssp             TTSHHHHHTTCC---SSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHH
T ss_pred             chHHHHHHcCCC---cCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHH
Confidence            345677888888   5899999987653332  2346678888887664

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.94  E-value=1.1  Score=33.53  Aligned_cols=73  Identities=15%  Similarity=0.099  Sum_probs=47.5

Q ss_pred             cCCCcEEEEEe-cCCChhH-HhhhHHHHHHHHHhcC-Cc-EEEEEeC-----------------------cccHhHHHHc
Q 015368           71 GKNRNVMVMFY-ANWCYWS-KKLAPEFAAAAKMLKG-EA-DLVMVDA-----------------------YLEKDLAKEY  123 (408)
Q Consensus        71 ~~~~~~~v~f~-a~wC~~C-~~~~p~~~~~~~~~~~-~v-~~~~v~~-----------------------~~~~~~~~~~  123 (408)
                      .++|.+++.|| +.||+.| .+..+.+.+.+..+.. ++ .++.+..                       |.+.++++.|
T Consensus        29 ~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~~~~~~~~~~~~~~~~~~~~llsD~~~~~a~~~  108 (161)
T d1hd2a_          29 FKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFGKET  108 (161)
T ss_dssp             TTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHHHHH
T ss_pred             hCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecCchhhhhhhhhhcccccccccccCCcceeeeee
Confidence            36788888888 6899999 5688888887776654 33 3333333                       3345678888


Q ss_pred             CCCc------C-----c--EEEEEeCCeEeEEe
Q 015368          124 NILA------Y-----P--TLYLFVAGVRQFQF  143 (408)
Q Consensus       124 ~i~~------~-----P--t~~~~~~g~~~~~~  143 (408)
                      |+..      .     .  ++++.++|.+...+
T Consensus       109 g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~  141 (161)
T d1hd2a_         109 DLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALN  141 (161)
T ss_dssp             TCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEE
T ss_pred             eeeeccccCccccccEEeEEEEEECCCEEEEEE
Confidence            8631      1     1  35566699665544

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=89.05  E-value=0.66  Score=34.83  Aligned_cols=32  Identities=22%  Similarity=0.228  Sum_probs=24.6

Q ss_pred             CCCcEEEEEe-cCCChhH-HhhhHHHHHHHHHhc
Q 015368           72 KNRNVMVMFY-ANWCYWS-KKLAPEFAAAAKMLK  103 (408)
Q Consensus        72 ~~~~~~v~f~-a~wC~~C-~~~~p~~~~~~~~~~  103 (408)
                      ++|.+++.|| +.|++.| .+..|.+.+..+.+.
T Consensus        34 ~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~   67 (162)
T d1tp9a1          34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELK   67 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEecccchhhhhhcchHHHHhhhHHH
Confidence            5678888888 7899999 567788877766554

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.96  E-value=1.8  Score=34.28  Aligned_cols=82  Identities=9%  Similarity=-0.022  Sum_probs=55.4

Q ss_pred             CcEEEEEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCc--------c---c-------HhHHHHcCCCcCcEEEEEe
Q 015368           74 RNVMVMFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAY--------L---E-------KDLAKEYNILAYPTLYLFV  135 (408)
Q Consensus        74 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~--------~---~-------~~~~~~~~i~~~Pt~~~~~  135 (408)
                      +.|+=+|.+.||..|-.....+.++++.  ++|..+..-.|        +   .       ...++.++.+++||=-++.
T Consensus         6 ~aVVElFTSqgCssCPpAd~~L~~L~~~--~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~vv   83 (225)
T d2axoa1           6 KGVVELFTSQGCASCPPADEALRKMIQK--GDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL   83 (225)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHH--TSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE
T ss_pred             CcEEEEeeCCCCCCCHHHHHHHHHhhCC--CCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEEE
Confidence            4566679999999999999999999875  36666655543        1   1       2356677888877655566


Q ss_pred             CCeEeEEeeCCCCHHHHHHHHHhHh
Q 015368          136 AGVRQFQFFGERTRDVISAWVREKM  160 (408)
Q Consensus       136 ~g~~~~~~~g~~~~~~l~~~i~~~~  160 (408)
                      +|+.   .....+.+.+...|....
T Consensus        84 nG~~---~~~gs~~~~~~~~i~~~~  105 (225)
T d2axoa1          84 NGRD---HVKGADVRGIYDRLDAFK  105 (225)
T ss_dssp             TTTE---EEETTCHHHHHHHHHHHH
T ss_pred             eCcc---cccccCHHHHHHHHHHHh
Confidence            8843   223346677777776554

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=87.50  E-value=0.99  Score=34.74  Aligned_cols=93  Identities=12%  Similarity=0.095  Sum_probs=60.2

Q ss_pred             CccEEE-EEeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcc--------------------------cccchh
Q 015368          283 PRKQLW-LFAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEG--------------------------VGRRVS  334 (408)
Q Consensus       283 ~~~~~i-~f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~--------------------------~~~~l~  334 (408)
                      ++++++ |+..||. |....+.+.+++++|+++   +.|+.+..++..                          -...+.
T Consensus        32 Gk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~  108 (187)
T d2cvba1          32 EPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA  108 (187)
T ss_dssp             SSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH
T ss_pred             CCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhc
Confidence            445444 5556666 788889999999999988   888888753210                          011233


Q ss_pred             hhccCCCCCCcEEEEEccCCcc-cc--CCC------CCChHHHHHHHHHHhcCcc
Q 015368          335 QEFGVSGNAPRVIAYSARDAKK-YV--LNG------ELTLSSIKSFGEEFLEDKL  380 (408)
Q Consensus       335 ~~~~i~~~~~p~i~i~~~~~~~-y~--~~~------~~~~~~i~~Fi~~~~~gk~  380 (408)
                      +.||+.  ..|.+++++.+|+. |.  +++      ..+...|.+-|+++++|+-
T Consensus       109 ~~~~v~--~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L~~Ai~~ll~g~~  161 (187)
T d2cvba1         109 KAYRAL--RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRGEE  161 (187)
T ss_dssp             HHTTCC--EESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTTCC
T ss_pred             cccccc--ceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHHHHHHHHHHcCCC
Confidence            334442  24888888875433 31  221      3455679999999999987

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=85.77  E-value=2.8  Score=26.41  Aligned_cols=72  Identities=11%  Similarity=0.004  Sum_probs=47.0

Q ss_pred             EEecCCChhHHhhhHHHHHHHHHhcCCcEEEEEeCcccHhHHHHcCCCcCcEEEEEeCCeEeEEeeCCCCHHHHHHHHHh
Q 015368           79 MFYANWCYWSKKLAPEFAAAAKMLKGEADLVMVDAYLEKDLAKEYNILAYPTLYLFVAGVRQFQFFGERTRDVISAWVRE  158 (408)
Q Consensus        79 ~f~a~wC~~C~~~~p~~~~~~~~~~~~v~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~  158 (408)
                      +|..++||.|++.+-.+....=    .+.+..++-+....+.+..+-..+|++. ..+|..+.      ....|.+|+++
T Consensus         3 LY~~~~cP~~~rvr~~l~~kgi----~~e~~~~~~~~~~~~~~~~p~~~VP~L~-~~dg~~i~------eS~~I~~yLd~   71 (75)
T d1g7oa2           3 LYIYDHCPYCLKARMIFGLKNI----PVELHVLLNDDAETPTRMVGQKQVPILQ-KDDSRYMP------ESMDIVHYVDK   71 (75)
T ss_dssp             EEECTTCHHHHHHHHHHHHHTC----CCEEEECCTTTTHHHHHHHSSSCCCEEE-ETTTEEEE------CHHHHHHHHHH
T ss_pred             EEccCCCCchHHHHHHHHHhCC----CcccccccccchHHHHHhCCCCceEEEE-EcCCCEEe------cHHHHHHHHHH
Confidence            4678899999987654443221    4555555555556677777788899774 34674322      46788899887


Q ss_pred             HhC
Q 015368          159 KMT  161 (408)
Q Consensus       159 ~~~  161 (408)
                      ..|
T Consensus        72 ~~G   74 (75)
T d1g7oa2          72 LDG   74 (75)
T ss_dssp             HTT
T ss_pred             hhC
Confidence            654

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.76  E-value=1.6  Score=30.71  Aligned_cols=82  Identities=15%  Similarity=0.265  Sum_probs=52.8

Q ss_pred             EEEEeeCC--C-chHHHHHHHHHHHHhcCCcceEEEEEEEcCCcccccchhhhccCCCCCCcEEEEEccCCccc--cCCC
Q 015368          287 LWLFAPAY--G-SDKVILTFEEVAKALKGKVNMLLHVYVEMNSEGVGRRVSQEFGVSGNAPRVIAYSARDAKKY--VLNG  361 (408)
Q Consensus       287 ~i~f~~~~--~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~~~~~~~l~~~~~i~~~~~p~i~i~~~~~~~y--~~~~  361 (408)
                      +++|...+  . +++..+.++++|.- .++   +.+...+....+ ++.+.+.+|++  ..|++++.+. ++.+  .|.|
T Consensus        26 l~~~~~~~~~~~~~e~~~ll~ela~l-Sdk---i~~~~~~~~~~e-~~~~~~~~~ve--r~Ps~~i~~~-g~~~gIrF~G   97 (119)
T d1a8la1          26 LIVFVRKDHCQYCDQLKQLVQELSEL-TDK---LSYEIVDFDTPE-GKELAKRYRID--RAPATTITQD-GKDFGVRYFG   97 (119)
T ss_dssp             EEEEECSSSCTTHHHHHHHHHHHHTT-CTT---EEEEEEETTSHH-HHHHHHHTTCC--SSSEEEEEET-TBCCSEEEES
T ss_pred             EEEEecCCCchhHHHHHHHHHHHHhh-CCC---eEEEEeccCcch-hhhHHHhhccc--cCceEEEecC-CcccceEEEe
Confidence            45566433  2 56777777777655 457   999998876554 45677899995  4688888765 3332  3455


Q ss_pred             CCChHHHHHHHHHHh
Q 015368          362 ELTLSSIKSFGEEFL  376 (408)
Q Consensus       362 ~~~~~~i~~Fi~~~~  376 (408)
                      -..=.++..||..++
T Consensus        98 iP~GhEf~SlilaIl  112 (119)
T d1a8la1          98 LPAGHEFAAFLEDIV  112 (119)
T ss_dssp             CCCTTHHHHHHHHHH
T ss_pred             ccCchhHHHHHHHHH
Confidence            434456777777664

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=85.55  E-value=1.9  Score=32.54  Aligned_cols=93  Identities=11%  Similarity=0.057  Sum_probs=54.6

Q ss_pred             CCccEEEE-EeeCCC-chHHHHHHHHHHHHhcCCcceEEEEEEEcCC--cccccchhhhccCCCC---------------
Q 015368          282 DPRKQLWL-FAPAYG-SDKVILTFEEVAKALKGKVNMLLHVYVEMNS--EGVGRRVSQEFGVSGN---------------  342 (408)
Q Consensus       282 ~~~~~~i~-f~~~~~-~~~~~~~~~~vA~~~~~~~~~i~f~~vd~~~--~~~~~~l~~~~~i~~~---------------  342 (408)
                      .++++++. +..+|. |......++++..++.++.  +.++.+..+.  .+-...+++.++++..               
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  132 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLK  132 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHH
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccc--cccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHh
Confidence            34455554 456665 7788888889888887542  5555554332  2112233455554321               


Q ss_pred             ------CCcEEEEEccCCcc-ccCCC--CCChHHHHHHHHHHh
Q 015368          343 ------APRVIAYSARDAKK-YVLNG--ELTLSSIKSFGEEFL  376 (408)
Q Consensus       343 ------~~p~i~i~~~~~~~-y~~~~--~~~~~~i~~Fi~~~~  376 (408)
                            ..|..++++.+|+. +.+.|  +.+.+++.++|+..+
T Consensus       133 ~~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al~  175 (176)
T d1jfua_         133 AIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAAT  175 (176)
T ss_dssp             TTTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHHH
T ss_pred             hhccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHhc
Confidence                  14788888885543 34555  345678888887754

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=83.14  E-value=7  Score=28.78  Aligned_cols=77  Identities=17%  Similarity=0.179  Sum_probs=43.4

Q ss_pred             HHHHcCCCcEEEEEe-cCCChhHHhhhHHHHHHH-HHh--cC-CcEEEEEeC---------------------cccHhHH
Q 015368           67 SEFMGKNRNVMVMFY-ANWCYWSKKLAPEFAAAA-KML--KG-EADLVMVDA---------------------YLEKDLA  120 (408)
Q Consensus        67 ~~~~~~~~~~~v~f~-a~wC~~C~~~~p~~~~~~-~~~--~~-~v~~~~v~~---------------------~~~~~~~  120 (408)
                      .+.+ ++|.+++.|| +.+.+.|-.++..+.... +..  ++ +..++.+..                     |.+..++
T Consensus        26 sd~~-~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~d~~~~~a~~~~~~~~~~~llsD~~~~~~  104 (163)
T d1nm3a2          26 SELF-DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFT  104 (163)
T ss_dssp             HHHH-TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHH
T ss_pred             HHHh-CCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecCCHHHHHHHhhhhccCceeeeccCChHHH
Confidence            3444 4566666666 689999998876654442 222  22 333333322                     2334567


Q ss_pred             HHcCCC-----------cCcEEEEEeCCeEeEEee
Q 015368          121 KEYNIL-----------AYPTLYLFVAGVRQFQFF  144 (408)
Q Consensus       121 ~~~~i~-----------~~Pt~~~~~~g~~~~~~~  144 (408)
                      +.+|+.           ..-..+++++|.+...+.
T Consensus       105 ~~~g~~~~~~~~g~g~~s~R~~~IiddG~I~~~~v  139 (163)
T d1nm3a2         105 EGMGMLVGKEDLGFGKRSWRYSMLVKNGVVEKMFI  139 (163)
T ss_dssp             HHTTCEEECTTTTCCEEECCEEEEEETTEEEEEEE
T ss_pred             HHhhhhccccccccccccceEEEEEeCCEEEEEEE
Confidence            777652           344577788997655553