Citrus Sinensis ID: 015377

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEHEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHEEEcHHHHHcccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHccccccHHHHHHHHccccEEEEc
Coil and Loop (DISEMBL)
MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLagaglgsghVFFSWFmefvppsnrgkwMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVfmpesprylctkgritdAHNILDKIAQfnqtslpsgnltsdgtndldeefstseetpllssarKRTTVRKSGFSSFLmlfsprffKTTILLWVLYFGNSFVYYGIVLLASelsgsqskcsssillsenvqdASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIanifapeiyptsmrstgAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNtidgvsnskqvlvva
Flexible Loop (DISEMBL)
MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQfnqtslpsgnLTSDGTNDLDEefstseetpllssarkrttvrKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFetkgkelvntidgvsnskqvlvva
Low Complexity Region (SEG)
MEEGRMSILGGALVTFVAGLLSAFSPNYisllilrglagaglgsgHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLAselsgsqskcsssillsENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTaailllealivlsvvvilliPFETKGKELVNTIDGVSNSKQVLVVA
Disordered region (IsUnstruct)
*******ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQF*******************************************GFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELS*****CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGV**********
Disordered Region (DISOPRED)
MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG*******************************SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSK******
Disordered Region (DISEMBL)
MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTND***********************RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL*********SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Disordered Region (DISPRO)
*EEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD************************GFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLVVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q940M4	500	Organic cation/carnitine	yes	no	0.948	0.774	0.503	2e-96
Q2XWK0	548	Synaptic vesicle 2-relate	N/A	no	0.860	0.640	0.353	2e-53
Q5R5T8	548	Synaptic vesicle 2-relate	yes	no	0.852	0.635	0.342	3e-51
Q1JP63	548	Synaptic vesicle 2-relate	yes	no	0.862	0.642	0.338	3e-51
Q8N4V2	548	Synaptic vesicle 2-relate	yes	no	0.852	0.635	0.342	3e-51
Q9Z2I7	548	Synaptic vesicle 2-relate	yes	no	0.857	0.638	0.342	1e-47
Q8BFT9	548	Synaptic vesicle 2-relate	yes	no	0.862	0.642	0.343	3e-47
P30638	520	Putative transporter ZK63	yes	no	0.855	0.671	0.318	2e-46
Q6PDF3	494	Putative transporter SVOP	no	no	0.867	0.716	0.292	2e-37
Q8N434	492	Putative transporter SVOP	no	no	0.875	0.725	0.281	1e-36

>sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1

 Score =  353 bits (905), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 203/403 (50%), Positives = 269/403 (66%), Gaps = 16/403 (3%)

Query: 12  ALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTF 71
           A+VTFVAG LSAFSPNY+ L+ILR L G GLG G V  SW++EF+P  +RG WMVVFS F
Sbjct: 97  AVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAF 156

Query: 72  WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 131
           WT G++ EA+LAW+VMP L WRWLLA S++P+ +LL+F  +  ESPRYL  +GR  +A  
Sbjct: 157 WTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALA 216

Query: 132 ILDKIAQFNQTSLPSG-NLTSDGTNDLDEEFSTSEETPLLSSARKRTTV----------R 180
           IL+KIA+ N+T LP G   +   T   + +   +E T LL +      V          +
Sbjct: 217 ILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADK 276

Query: 181 KSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENV 240
           + GF S L L SP   K T+LLWV++FGN+F YYG+VLL +EL+ S ++C  +     N 
Sbjct: 277 EPGF-SLLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNS 335

Query: 241 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT 300
            D + Y +VFI SFAE PGLL +A +VDR+GRK SM  M    CIFLLPL++ QS  + T
Sbjct: 336 NDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITT 394

Query: 301 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 360
            LL G R+     F +  I+APEIYPT++R+TG GV  +VGRIGG++CPLVAVGLV  CH
Sbjct: 395 VLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCH 454

Query: 361 QTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQ 403
           QT A+LL E +I++S + + L PFET G++L    D +S SK+
Sbjct: 455 QTIAVLLFEVVILVSGICVCLFPFETSGRDLT---DSISASKE 494

High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations.
Arabidopsis thaliana (taxid: 3702)

>sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/390 (35%), Positives = 195/390 (50%), Gaps = 39/390 (10%)

Query: 15  TFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTF 74
           T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P  +R K +++   FW  
Sbjct: 160 TLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKSRAKCILLIEIFWAL 219

Query: 75  GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILD 134
           G+V E  LA  VMP L WRWLL LSA+P  +  I   ++PES RY    G    A   L 
Sbjct: 220 GTVFEVLLAIFVMPTLGWRWLLILSALPLMLFAILCFWLPESARYEVLSGNQEKALATLK 279

Query: 135 KIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPR 194
           +IA  N   +P G L                   ++S    R  +R         LFSP+
Sbjct: 280 RIATENGAPMPLGKL-------------------IVSRQEDRGKIRD--------LFSPQ 312

Query: 195 FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS---------ILLSENVQDASV 245
           F  TT+LLW ++F N+F YYG+VLL +EL  +   CS S           L+        
Sbjct: 313 FRCTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVED 372

Query: 246 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSG 305
           Y ++  T+ +E PGLL    ++DRVGRK +M I FI      L L       +LT  L  
Sbjct: 373 YTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFLFI 432

Query: 306 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAA 364
           AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T  
Sbjct: 433 ARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSIYLT-- 490

Query: 365 ILLLEALIVLSVVVILLIPFETKGKELVNT 394
           +L+     VL+ V    +P ETKG+ L  +
Sbjct: 491 VLVYSGCCVLAAVASCFLPIETKGRGLQES 520

Xenopus laevis (taxid: 8355)

>sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 202/397 (50%), Gaps = 49/397 (12%)

Query: 13  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 72
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 73  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 132
             G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 133 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 192
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 193 PRFFKTTILLWVLYFGNSFVYYGIVLLASEL-------------SGSQSKCSSSILLSEN 239
           P F  TT+LLW ++F N+F YYG+VLL +EL                ++KCS   L  E 
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEY 367

Query: 240 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNIL 298
           + +   Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ 
Sbjct: 368 LSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNV- 425

Query: 299 LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVT 357
           LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +
Sbjct: 426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query: 358 SCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 394
           S + T A+       +L+ +    +P ETKG+ L  +
Sbjct: 486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Pongo abelii (taxid: 9601)

>sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 133/393 (33%), Positives = 197/393 (50%), Gaps = 41/393 (10%)

Query: 13  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 72
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 73  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 132
             G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 133 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 192
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 193 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS----------ILLSENVQD 242
           P F  TT+LLW ++F N+F YYG+VLL +EL  +   CS S           L  E + +
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSE 370

Query: 243 ASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTAL 302
              Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT L
Sbjct: 371 ED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLL 429

Query: 303 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQ 361
           L  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + 
Sbjct: 430 LFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYL 489

Query: 362 TAAILLLEALIVLSVVVILLIPFETKGKELVNT 394
           T A+       +L+ +    +P ETKG+ L  +
Sbjct: 490 TLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Bos taurus (taxid: 9913)

>sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 136/397 (34%), Positives = 202/397 (50%), Gaps = 49/397 (12%)

Query: 13  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 72
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 73  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 132
             G+V E  LA  VMP L WRWLL LSA+P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 133 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 192
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 193 PRFFKTTILLWVLYFGNSFVYYGIVLLASEL-------------SGSQSKCSSSILLSEN 239
           P F  TT+LLW ++F N+F YYG+VLL +EL                ++KCS   L  E 
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCS---LACEY 367

Query: 240 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNIL 298
           + +   Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ 
Sbjct: 368 LSEED-YMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNV- 425

Query: 299 LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVT 357
           LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +
Sbjct: 426 LTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485

Query: 358 SCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 394
           S + T A+       +L+ +    +P ETKG+ L  +
Sbjct: 486 SVYLTLAV--YSGCCLLAALASCFLPIETKGRGLQES 520

Homo sapiens (taxid: 9606)

>sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1

 Score =  191 bits (484), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/391 (34%), Positives = 197/391 (50%), Gaps = 41/391 (10%)

Query: 15  TFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTF 74
           T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW  
Sbjct: 160 TLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAI 219

Query: 75  GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILD 134
           G+V E  LA  VMP L WRWLL LSA P  V  +   ++PES RY    G    A   L 
Sbjct: 220 GTVFEVLLAVFVMPSLGWRWLLLLSAAPLLVFAVLCFWLPESARYDVLSGNQEKAIATLK 279

Query: 135 KIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPR 194
           +IA  N   +P G L                   ++S    R  +R         LF+P 
Sbjct: 280 RIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFTPH 312

Query: 195 FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS---------SSILLSENVQDASV 245
           F  TT+LLW ++F N+F YYG+VLL +EL  +   CS         +   L+        
Sbjct: 313 FRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKED 372

Query: 246 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILLTALLS 304
           Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ LT LL 
Sbjct: 373 YMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNV-LTLLLF 431

Query: 305 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTA 363
            AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T 
Sbjct: 432 IARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTL 491

Query: 364 AILLLEALIVLSVVVILLIPFETKGKELVNT 394
           A+       +L+ +    +P ETKG+ L  +
Sbjct: 492 AV--YSGCCLLAALASCFLPIETKGRALQES 520

Rattus norvegicus (taxid: 10116)

>sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1

 Score =  189 bits (481), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/393 (34%), Positives = 198/393 (50%), Gaps = 41/393 (10%)

Query: 13  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 72
           L T   G+LSAF+P Y  +L+LRGL G G+G      + + EF+P   R K +++   FW
Sbjct: 158 LWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFW 217

Query: 73  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 132
             G+V E  LA  VMP L WRWLL LSA P  +  +   ++PES RY    G    A   
Sbjct: 218 AIGTVFEVLLAVFVMPSLGWRWLLLLSAAPLLLFAVLCFWLPESARYDVLSGNQEKAIAT 277

Query: 133 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 192
           L +IA  N   +P G L                   ++S    R  +R         LF+
Sbjct: 278 LKRIATENGAPMPLGKL-------------------IISRQEDRGKMRD--------LFT 310

Query: 193 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS---------SSILLSENVQDA 243
           P F  TT+LLW ++F N+F YYG+VLL +EL  +   CS         +   L+      
Sbjct: 311 PHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSK 370

Query: 244 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILLTAL 302
             Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+ LT L
Sbjct: 371 EDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNV-LTLL 429

Query: 303 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQ 361
           L  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + 
Sbjct: 430 LFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYL 489

Query: 362 TAAILLLEALIVLSVVVILLIPFETKGKELVNT 394
           T A+       +L+ V    +P ETKG+ L  +
Sbjct: 490 TLAV--YSGCCLLAGVASCFLPIETKGRALQES 520

Mus musculus (taxid: 10090)

>sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/396 (31%), Positives = 191/396 (48%), Gaps = 47/396 (11%)

Query: 13  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFW 72
           LV  + G++S  SP++  LL  RGL G G+G      + + EF+P + R K +V+  +FW
Sbjct: 157 LVACIMGVISGMSPHFYVLLFFRGLTGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFW 216

Query: 73  TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNI 132
             G+V EA LA+ VM    WR L+ LS++P  +  +   ++PES R+    G    A   
Sbjct: 217 AIGAVFEALLAYFVMESFGWRALMFLSSLPLGIFAVASFWLPESARFDMASGHPERALET 276

Query: 133 LDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS 192
           L   A+ N+  LP+G L S               T   S +R               L S
Sbjct: 277 LQAAARMNRVQLPTGRLVSS--------------TKAGSESR----------GDIANLLS 312

Query: 193 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ-------DASV 245
           P   KTTILLW ++   +F YYG+VL  + L  S  +C    L S   Q         S 
Sbjct: 313 PDLRKTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGG-LFSNGTQMEVCQPLTRSD 371

Query: 246 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSG 305
           Y ++  T+ AE PGL+   L+++  GRK +M + +    IF   L        +T L+  
Sbjct: 372 YFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFV 431

Query: 306 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-------VGLVTS 358
           AR F  G F  A ++ PE+YPT++R+ G G   A+ RIG +V P +A       + L   
Sbjct: 432 ARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIAQVASEKSLSLPIG 491

Query: 359 CHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 394
            + TAAI        L ++  L +P ETKG++++++
Sbjct: 492 IYGTAAI--------LGLIASLSLPIETKGRQMMDS 519

Caenorhabditis elegans (taxid: 6239)

>sp|Q6PDF3|SVOPL_MOUSE Putative transporter SVOPL OS=Mus musculus GN=Svopl PE=2 SV=1

 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 202/413 (48%), Gaps = 59/413 (14%)

Query: 4   GRMSILGGALVTFVAG----LLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPP 58
           GR  IL   L++F+ G    LL++FSP+YI  + LR + G G+ SGH        EF+P 
Sbjct: 112 GRWKIL---LLSFLWGAYFSLLTSFSPSYIWFVFLRTMVGCGV-SGHAQGLIIKTEFLPT 167

Query: 59  SNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPR 118
             RG  + +   FW  GS+   ++A +V+P + WRWL+ +++IP  +L++   F+PES R
Sbjct: 168 KYRGYMLPLSQVFWLAGSLLIISMASVVIPTIGWRWLIRIASIPGIILIMAFKFIPESAR 227

Query: 119 YLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTT 178
           +  + G    A N L+ IA+ N++ +P G L                  P+L   R R  
Sbjct: 228 FNVSTGNTQAALNTLESIAKMNRSVMPEGQLVE----------------PILEK-RGR-- 268

Query: 179 VRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL------SGSQSKCSS 232
                   F  L   ++ +TT+ +W+++ G SF YYG++L ++EL       GS+S+   
Sbjct: 269 --------FADLLDSKYLRTTLQIWIIWLGISFAYYGVILASAELLERDLVCGSKSESEP 320

Query: 233 SILLSENVQDA--------------SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTI 278
            ++  E   D+              S Y  + I++  E+       L ++ +GR+LS++I
Sbjct: 321 EVV--ETTGDSGEGLSPCYCHIFAPSDYRTMIISTLGEIALNPLNILGINFLGRRLSLSI 378

Query: 279 MFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAY 338
                 +F L L    S+  L   L   R      F    I+  E+YPT MR+ G G + 
Sbjct: 379 TMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTAEVYPTPMRAIGMGTSG 438

Query: 339 AVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 391
           ++ RIG MV P ++  L+++     A+ L  ++ V+  +    +P ETKG+ L
Sbjct: 439 SLCRIGAMVAPFISQVLMSASF-LGALCLFSSVCVVCAISAFTLPIETKGRAL 490

Mus musculus (taxid: 10090)

>sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2

 Score =  154 bits (390), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 115/408 (28%), Positives = 199/408 (48%), Gaps = 51/408 (12%)

Query: 4   GRMSILGGALVTFVAG----LLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPS 59
           GR  IL   L++F+ G    LL++F+P+YI  + LR + G G+           EF+P  
Sbjct: 112 GRWKIL---LISFLWGAYFSLLTSFAPSYIWFVFLRTMVGCGVSGHSQGLIIKTEFLPTK 168

Query: 60  NRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRY 119
            RG  + +   FW  GS+    LA +++P + WRWL+ +++IP  +L++   F+PES R+
Sbjct: 169 YRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIRVASIPGIILIVAFKFIPESARF 228

Query: 120 LCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV 179
             + G    A   L+++A+ N++ +P G L                  P+L   R R   
Sbjct: 229 NVSTGNTRAALATLERVAKMNRSVMPEGKLVE----------------PVLEK-RGR--- 268

Query: 180 RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL------SGSQSKCSSS 233
                  F  L   ++ +TT+ +WV++ G SF YYG++L ++EL       GS+S  +  
Sbjct: 269 -------FADLLDAKYLRTTLQIWVIWLGISFAYYGVILASAELLERDLVCGSKSDSAVV 321

Query: 234 ILLSENVQDAS-VYINVF---------ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFV 283
           +   ++ +  S  Y ++F         I++  E+       L ++ +GR+LS++I     
Sbjct: 322 VTGGDSGESQSPCYCHMFAPSDYRTMIISTIGEIALNPLNILGINFLGRRLSLSITMGCT 381

Query: 284 CIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI 343
            +F L L    S+  L   L   R      F    I+  E+YPT+MR+ G G + ++ RI
Sbjct: 382 ALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTAEVYPTTMRALGMGTSGSLCRI 441

Query: 344 GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 391
           G MV P ++  ++ S     A+ L  ++ V+  +    +P ETKG+ L
Sbjct: 442 GAMVAPFIS-QVLMSASILGALCLFSSVCVVCAISAFTLPIETKGRAL 488

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
224118680	492	predicted protein [Populus trichocarpa]	0.982	0.815	0.639	1e-132
255573803	498	sugar transporter, putative [Ricinus com	0.985	0.807	0.606	1e-130
255574249	497	sugar transporter, putative [Ricinus com	0.982	0.806	0.612	1e-129
383932368	482	MFS [Gossypium hirsutum]	0.955	0.809	0.629	1e-127
224118546	493	predicted protein [Populus trichocarpa]	0.953	0.789	0.614	1e-126
222629519	424	hypothetical protein OsJ_16102 [Oryza sa	0.955	0.919	0.550	1e-116
218195538	529	hypothetical protein OsI_17329 [Oryza sa	0.958	0.739	0.546	1e-115
38567900	588	OSJNBa0060N03.20 [Oryza sativa Japonica	0.958	0.664	0.546	1e-115
90265074	489	H0702G05.6 [Oryza sativa Indica Group]	0.953	0.795	0.549	1e-115
224118676	492	predicted protein [Populus trichocarpa]	0.946	0.784	0.587	1e-112

>gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/402 (63%), Positives = 311/402 (77%), Gaps = 1/402 (0%)

Query: 5   RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 64
           R   LG  ++T  AG LS FSPNY+SLLILR L G GLG G VF SWF+EFVP S+RG W
Sbjct: 91  RQGFLGITIITSAAGFLSTFSPNYVSLLILRCLVGVGLGGGPVFSSWFLEFVPASHRGTW 150

Query: 65  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 124
           MVVFSTFWTFG++ EAALAWIV+P L WRWLLA S++P+   L F   +PESPRYL  KG
Sbjct: 151 MVVFSTFWTFGTIFEAALAWIVLPRLNWRWLLAFSSLPSIAQLFFYWIVPESPRYLSMKG 210

Query: 125 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 184
           RIT+AHNIL+KIAQ NQ+ LP G L SD T  LDEE + S+ TPLLSS R   +  KSGF
Sbjct: 211 RITEAHNILEKIAQLNQSKLPPGMLVSDSTIGLDEESAPSKYTPLLSSTRNLVSDFKSGF 270

Query: 185 SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS 244
           SSF+MLFS +  +TT+LLW+L+FGN+F YYGI+LL SELS  + KC+S++L SEN+QD S
Sbjct: 271 SSFVMLFSSKLIRTTLLLWLLFFGNAFSYYGIILLTSELSSEEGKCASTVLRSENLQDDS 330

Query: 245 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS 304
           +YINVFITS AELPG+L +A++VDR GRKLSM  MF+  CIFLLPLV  Q   L TALL 
Sbjct: 331 LYINVFITSLAELPGILLSAIIVDRFGRKLSMAFMFVLACIFLLPLVFHQHATLTTALLF 390

Query: 305 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAA 364
           GARM ++GTF +A I+APE+YPT +R+TGAGVA AVGRIGGMVCPLVAVGLV  CH   A
Sbjct: 391 GARMCAIGTFTVAAIYAPEVYPTVIRATGAGVANAVGRIGGMVCPLVAVGLVAGCHLKEA 450

Query: 365 ILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLV 406
           I+L E +IV+SVV +LL PFET G+EL +++   S+ KQV+V
Sbjct: 451 IILFEVVIVISVVCVLLFPFETSGRELSDSL-AASDPKQVVV 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/402 (60%), Positives = 294/402 (73%)

Query: 5   RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 64
           R  ILG  L+T  AG LS F PNYISL+ LR L G GLG G VF SWF+EFVP S+RG W
Sbjct: 96  RKGILGSTLLTCGAGSLSTFCPNYISLITLRCLVGIGLGGGPVFSSWFLEFVPASHRGTW 155

Query: 65  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 124
           MVV+ST WTFG++ EA LAWIVMP L+WRWLLA S++P+ VLL+F    PESPRYLCTKG
Sbjct: 156 MVVYSTSWTFGTIFEATLAWIVMPRLSWRWLLAFSSLPSIVLLLFYRLAPESPRYLCTKG 215

Query: 125 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 184
           R TDAH IL+KIA  NQ  LP G L SD T  LDEE S+    PLLS ARKR +  KS F
Sbjct: 216 RFTDAHRILEKIALLNQAKLPGGILVSDSTTGLDEESSSLSHQPLLSLARKRVSSFKSAF 275

Query: 185 SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS 244
           SSF MLFS R  KTT+LLWVLYFGNSF+YYGI+LL SELSG Q +C S+    EN QD +
Sbjct: 276 SSFFMLFSSRLIKTTLLLWVLYFGNSFLYYGIILLTSELSGRQDECRSATSSLENHQDEN 335

Query: 245 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS 304
           +YI++FITS AELPG++ +A+ VDR GRK SM  MF+  CIFLLPLV+ QS +L T+ L 
Sbjct: 336 LYIDIFITSLAELPGIILSAITVDRFGRKRSMIFMFVAACIFLLPLVSHQSAVLRTSFLF 395

Query: 305 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAA 364
           GARM ++GTF IA I+ PE+YPT +R+TG+GVA A GRIGGM+CPLVAVGLVT CH  A 
Sbjct: 396 GARMCAIGTFTIACIYCPELYPTPVRTTGSGVASAAGRIGGMICPLVAVGLVTGCHVEAG 455

Query: 365 ILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLV 406
           I++ E +  +S + +L  P+ETKG EL +++         LV
Sbjct: 456 IIVFEVVAAISAICLLFFPYETKGCELSDSVGPFDPKHNNLV 497

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/403 (61%), Positives = 305/403 (75%), Gaps = 2/403 (0%)

Query: 5   RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 64
           R  +L   ++T  AG +SAFSPNY++L++LR L G GLG  HVF SWF+EF+P S+RGKW
Sbjct: 94  RKCVLSITVITSGAGFISAFSPNYLTLVVLRCLVGFGLGGTHVFLSWFLEFIPTSHRGKW 153

Query: 65  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 124
           MV+FSTFWT G + EA+LAWIVM  L WRWLLALS +P+F LL+F   +PESPRYLC KG
Sbjct: 154 MVIFSTFWTLGIIFEASLAWIVMLRLNWRWLLALSTVPSFSLLLFYGLVPESPRYLCLKG 213

Query: 125 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEET-PLLSSARKRTTVRKSG 183
           R   AH +L+KIA  NQ  LP G L S G    DEE S  E+   LL   R++ +  KSG
Sbjct: 214 RTAQAHQVLEKIALVNQKELPPGMLVSYGKIKEDEEISALEQKRSLLFMDREKISTLKSG 273

Query: 184 FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA 243
           FSSF +LFS    +TT+LLWVL+FGN F YYGI+LL S+LS S+SKCS +IL S+N QD 
Sbjct: 274 FSSFSLLFSSNLIQTTLLLWVLFFGNVFSYYGIILLTSQLSSSESKCSLTILHSQNPQDE 333

Query: 244 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALL 303
           S++++V ITSFAELPG+L +A++VDR GRKLSM IMFIF  IFLLPLV+ QS+IL T LL
Sbjct: 334 SLFMDVLITSFAELPGILLSAMMVDRFGRKLSMAIMFIFAWIFLLPLVSRQSDILTTGLL 393

Query: 304 SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA 363
            GARMFS+GTF +A+I+APE+YPTS+RSTGAG A AVGRIGGMVCPLVAV LV++CH  A
Sbjct: 394 FGARMFSLGTFTVASIYAPELYPTSIRSTGAGTASAVGRIGGMVCPLVAVALVSNCHFKA 453

Query: 364 AILLLEALIVLSVVVILLIPFETKGKELVNTIDGVSNSKQVLV 406
           AI+L E +I ++VV ILL PFET G+EL + +     SKQ LV
Sbjct: 454 AIILFEVVIAITVVCILLFPFETSGRELSDRL-AAPESKQDLV 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/391 (62%), Positives = 292/391 (74%), Gaps = 1/391 (0%)

Query: 5   RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 64
           R   L  ++VTF AGLLS FSPNY++L +LRGL G GLG   VF SWF+EF+P SNRG W
Sbjct: 91  RKGFLTISMVTFGAGLLSTFSPNYLTLALLRGLVGFGLGGSSVFLSWFLEFIPASNRGMW 150

Query: 65  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 124
           MVVFSTFWTFGS+ EA LAWIVMP L WRW+LA SA+P+F LLI     PESPRYLC KG
Sbjct: 151 MVVFSTFWTFGSIFEATLAWIVMPRLNWRWVLAFSAVPSFALLILYGVAPESPRYLCMKG 210

Query: 125 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEET-PLLSSARKRTTVRKSG 183
             +DA  IL+KIA  NQT LP G L S  +ND DEE + SE T PLL S  K TT  KSG
Sbjct: 211 NTSDALRILEKIASVNQTKLPPGVLVSGRSNDKDEESAPSENTAPLLPSLSKSTTQSKSG 270

Query: 184 FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA 243
           FSSF MLFS +  +TT+LLWVL+FG+SF YYGI+LL S+LS  QS C  S+  + N QD 
Sbjct: 271 FSSFFMLFSSKLIRTTLLLWVLFFGDSFSYYGIILLTSKLSSGQSTCFPSLQSNINPQDD 330

Query: 244 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALL 303
            +Y+N FITS AELPGLL +A+LVDRVGRK SM IMF    IFL PL+  Q  +L T LL
Sbjct: 331 GLYLNAFITSMAELPGLLLSAILVDRVGRKHSMAIMFGLAFIFLTPLLIQQPAVLTTCLL 390

Query: 304 SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA 363
            GARM +MGTF +A+I++PE+YPTS+R+TGAGVA A+GRIGGMVCPLVAVGLV  CHQTA
Sbjct: 391 FGARMNAMGTFTVASIYSPELYPTSVRTTGAGVASAIGRIGGMVCPLVAVGLVNECHQTA 450

Query: 364 AILLLEALIVLSVVVILLIPFETKGKELVNT 394
           A+ L    IV+S+V I L P++TKG+EL +T
Sbjct: 451 AVALFLVAIVVSIVCIQLFPYDTKGRELSDT 481

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/389 (61%), Positives = 294/389 (75%)

Query: 16  FVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFG 75
           F +GLLSAFSPNY SL+I+R L G GLG   V  SWF+EFVP  +RGKWMVVFSTFWT G
Sbjct: 101 FQSGLLSAFSPNYESLVIIRCLVGLGLGGSTVLCSWFLEFVPAPHRGKWMVVFSTFWTLG 160

Query: 76  SVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDK 135
           ++ EA+LAW+VM  L+WRWLLA S++P+  LL+F   +PESPRYLC KGRI DAH IL K
Sbjct: 161 AIFEASLAWLVMQRLSWRWLLAFSSLPSIALLLFYGIVPESPRYLCMKGRINDAHKILQK 220

Query: 136 IAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRF 195
           IA  NQ+ LP G L  D T   +E+ + S+ TPLLSS RK     KS FSSF MLFS   
Sbjct: 221 IALLNQSELPPGMLVPDSTVGQEEKSAPSKYTPLLSSTRKVIVDFKSVFSSFFMLFSSTL 280

Query: 196 FKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFA 255
            +TT+LLWVL FGN F YYGI+LL SELS  Q KC S+IL SEN+Q+ S+YINVF+TS A
Sbjct: 281 IQTTLLLWVLLFGNVFSYYGIILLTSELSSQQGKCGSTILSSENLQNDSLYINVFVTSLA 340

Query: 256 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFI 315
           ELPGLL +A++VDR+GRKLSM +M +  CIFL PL+   S  L TA+L GARM  MG+F 
Sbjct: 341 ELPGLLLSAIIVDRLGRKLSMALMLVLGCIFLFPLLFNVSANLTTAMLFGARMCVMGSFT 400

Query: 316 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS 375
           IA ++APE+YPT++R+TGAGVA +VGRIGGM+CPLVAVGLVT C+ T AI+L E ++ +S
Sbjct: 401 IATLYAPELYPTAVRATGAGVASSVGRIGGMICPLVAVGLVTGCYLTEAIILFEVVMAIS 460

Query: 376 VVVILLIPFETKGKELVNTIDGVSNSKQV 404
               LL PFETKG+EL +++D VS+S QV
Sbjct: 461 AFSSLLFPFETKGQELSDSVDHVSDSIQV 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222629519|gb|EEE61651.1| hypothetical protein OsJ_16102 [Oryza sativa Japonica Group]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/396 (55%), Positives = 275/396 (69%), Gaps = 6/396 (1%)

Query: 4   GRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGK 63
           GR   L  A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   RG 
Sbjct: 25  GRRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGT 84

Query: 64  WMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTK 123
           WMVVFS FWT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC K
Sbjct: 85  WMVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMK 144

Query: 124 GRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG 183
           GR+T+A ++L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ +  
Sbjct: 145 GRVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIEDK 203

Query: 184 FSSF-----LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE 238
            SSF       L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + S 
Sbjct: 204 VSSFGGLSVAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESI 263

Query: 239 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNIL 298
           +  DAS+Y NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++IL
Sbjct: 264 HSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDIL 323

Query: 299 LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS 358
               L GAR+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV S
Sbjct: 324 TRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHS 383

Query: 359 CHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 394
           C QT AILL E +I LS + +   PFETKG  L +T
Sbjct: 384 CQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 419

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195538|gb|EEC77965.1| hypothetical protein OsI_17329 [Oryza sativa Indica Group]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/397 (54%), Positives = 275/397 (69%), Gaps = 6/397 (1%)

Query: 3   EGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRG 62
           + R   L  A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   RG
Sbjct: 129 DRRRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRG 188

Query: 63  KWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCT 122
            WMVVFS FWT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC 
Sbjct: 189 TWMVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCM 248

Query: 123 KGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKS 182
           KGR+T+A ++L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ + 
Sbjct: 249 KGRVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIED 307

Query: 183 GFSSF-----LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS 237
             SSF       L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + S
Sbjct: 308 KVSSFGGLSVAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVES 367

Query: 238 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI 297
            +  DAS+Y NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++I
Sbjct: 368 IHSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDI 427

Query: 298 LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT 357
           L    L GAR+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV 
Sbjct: 428 LTRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVH 487

Query: 358 SCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 394
           SC QT AILL E +I LS + +   PFETKG  L +T
Sbjct: 488 SCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 524

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38567900|emb|CAE03655.2| OSJNBa0060N03.20 [Oryza sativa Japonica Group]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/397 (54%), Positives = 275/397 (69%), Gaps = 6/397 (1%)

Query: 3   EGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRG 62
           + R   L  A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   RG
Sbjct: 188 DRRRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRG 247

Query: 63  KWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCT 122
            WMVVFS FWT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC 
Sbjct: 248 TWMVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCM 307

Query: 123 KGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKS 182
           KGR+T+A ++L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ + 
Sbjct: 308 KGRVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIED 366

Query: 183 GFSSF-----LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS 237
             SSF       L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + S
Sbjct: 367 KVSSFGGLSVAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVES 426

Query: 238 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI 297
            +  DAS+Y NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++I
Sbjct: 427 IHSNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDI 486

Query: 298 LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT 357
           L    L GAR+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV 
Sbjct: 487 LTRVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVH 546

Query: 358 SCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 394
           SC QT AILL E +I LS + +   PFETKG  L +T
Sbjct: 547 SCQQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 583

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265074|emb|CAH67747.1| H0702G05.6 [Oryza sativa Indica Group]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/395 (54%), Positives = 274/395 (69%), Gaps = 6/395 (1%)

Query: 5   RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKW 64
           R   L  A+VT  AG LSAF+PNY+SL+ LR L G GLG G V  SWF+EFVP   RG W
Sbjct: 91  RRGFLFTAIVTSGAGFLSAFAPNYVSLISLRFLVGIGLGGGPVLASWFLEFVPAPTRGTW 150

Query: 65  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 124
           MVVFS FWT G++ EA+LAW VMP   WRWLLALSA+P+FVLL+F V  PESPR+LC KG
Sbjct: 151 MVVFSAFWTVGTIFEASLAWTVMPKFGWRWLLALSAVPSFVLLLFYVITPESPRFLCMKG 210

Query: 125 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 184
           R+T+A ++L+K+A+ N   LPSG L SD   +LDE  STSE T LL+ A +  T+ +   
Sbjct: 211 RVTEAMDVLEKMARLNNVQLPSGRLVSDKNIELDE-LSTSESTTLLADAEEDDTIIEDKV 269

Query: 185 SSF-----LMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN 239
           SSF       L SP+  + T+LLW+ +FGN+F YYGIVLL SELS     C+   + S +
Sbjct: 270 SSFGGLSVAKLLSPKLIRATLLLWMTFFGNAFSYYGIVLLTSELSNGNRICAKEEVESIH 329

Query: 240 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILL 299
             DAS+Y NVFI+SFAE+PG   +A++VDR+GRKLSM  M    C+FL PL+  +++IL 
Sbjct: 330 SNDASLYKNVFISSFAEIPGSFLSAMIVDRIGRKLSMASMLFTSCVFLFPLIFSRTDILT 389

Query: 300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC 359
              L GAR+    +F I  I+APEIYPTS+R+TG GVA +VGRIGG++CPLVAV LV SC
Sbjct: 390 RVSLFGARLCISASFTIVYIYAPEIYPTSVRTTGIGVASSVGRIGGILCPLVAVALVHSC 449

Query: 360 HQTAAILLLEALIVLSVVVILLIPFETKGKELVNT 394
            QT AILL E +I LS + +   PFETKG  L +T
Sbjct: 450 QQTTAILLFELVIFLSGLAVSFFPFETKGCRLNDT 484

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118676|ref|XP_002331420.1| predicted protein [Populus trichocarpa] gi|222873634|gb|EEF10765.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/388 (58%), Positives = 287/388 (73%), Gaps = 2/388 (0%)

Query: 9   LGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVF 68
           LG  L+T  AGLLSAFSPNY SL+ILR L G+GLG G VF SWF+EFVP S+RGK M++ 
Sbjct: 105 LGATLLTCGAGLLSAFSPNYASLVILRCLVGSGLGGGSVFSSWFLEFVPASHRGKRMLLL 164

Query: 69  STFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITD 128
           S FW FG++ EA LAW+VMP L+WRWLLA+S +PAF LL+F   +PESPRYLC KGRI D
Sbjct: 165 SWFWAFGTIFEALLAWMVMPRLSWRWLLAVSCLPAFALLLFYSHVPESPRYLCMKGRIND 224

Query: 129 AHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFL 188
           A+NIL+KIA  NQ+ LP G L  D T  LDEE +TSE TPLLS+  K     +SGF SFL
Sbjct: 225 AYNILEKIALLNQSKLPPGELVPDSTIGLDEESATSEYTPLLSTTEKMDLDFRSGFQSFL 284

Query: 189 MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYIN 248
           MLFS +  +TT+LLW L FGN F YY I+LL SELS  QS+C S++L SEN    S+YIN
Sbjct: 285 MLFSSKLIRTTLLLWELLFGNVFSYYAIILLTSELSSWQSRCGSNLLKSENPD--SLYIN 342

Query: 249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARM 308
           VFI++ AELPG+L +A +VDR+GRKL++   F+   IFLLPLV  QS  L  + L GARM
Sbjct: 343 VFISNLAELPGILLSATIVDRIGRKLTVAFTFVLAGIFLLPLVYHQSATLTMSFLFGARM 402

Query: 309 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLL 368
            +   + +A I+  E+YPTS+R+TGAG A A G++GGM+CPLVAVGLVTSC  T AI+L 
Sbjct: 403 STKAAYSVATIYVQELYPTSVRATGAGAANAAGKVGGMICPLVAVGLVTSCQITEAIILF 462

Query: 369 EALIVLSVVVILLIPFETKGKELVNTID 396
           E L+ +S V ++ IP +TKG++L ++ID
Sbjct: 463 EVLMAISAVCVMFIPVDTKGQKLCDSID 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2089270	500	NiaP "nicotinate transporter"	0.948	0.774	0.459	1.4e-85
ZFIN|ZDB-GENE-070705-359	411	svopb "SV2 related protein hom	0.490	0.486	0.309	3.6e-45
UNIPROTKB|F1NIB3	554	SVOP "Uncharacterized protein"	0.487	0.359	0.323	1.6e-41
UNIPROTKB|F6XK47	483	SVOP "Uncharacterized protein"	0.487	0.412	0.323	1.9e-41
RGD|620277	548	Svop "SV2 related protein" [Ra	0.487	0.363	0.323	4.2e-41
UNIPROTKB|F1LPX1	548	Svop "Synaptic vesicle 2-relat	0.487	0.363	0.323	4.2e-41
UNIPROTKB|Q9Z2I7	548	Svop "Synaptic vesicle 2-relat	0.487	0.363	0.323	4.2e-41
UNIPROTKB|E2QZ16	548	SVOP "Uncharacterized protein"	0.487	0.363	0.323	4.3e-41
UNIPROTKB|Q8N4V2	548	SVOP "Synaptic vesicle 2-relat	0.487	0.363	0.323	4.4e-41
UNIPROTKB|G3MZU5	547	SVOP "Synaptic vesicle 2-relat	0.487	0.363	0.319	5.6e-41

TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 185/403 (45%), Positives = 240/403 (59%)

Query:    12 ALVTFVAGLLSAFSPNYXXXXXXXXXXXXXXXXXHVFFSWFMEFVPPSNRGKWMVVFSTF 71
             A+VTFVAG LSAFSPNY                  V  SW++EF+P  +RG WMVVFS F
Sbjct:    97 AVVTFVAGFLSAFSPNYMWLIILRCLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAF 156

Query:    72 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 131
             WT G++ EA+LAW+VMP L WRWLLA S++P+ +LL+F  +  ESPRYL  +GR  +A  
Sbjct:   157 WTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALA 216

Query:   132 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFST-SEETPLLSSARKRTTV----------R 180
             IL+KIA+ N+T LP G L+S+   +L+E  +  +E T LL +      V          +
Sbjct:   217 ILEKIARMNKTQLPPGVLSSELETELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADK 276

Query:   181 KSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENV 240
             + GFS  L L SP   K T+LLWV++FGN+F YYG+VLL                   N 
Sbjct:   277 EPGFS-LLALLSPTLMKRTLLLWVVFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNS 335

Query:   241 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT 300
              D + Y +VFI SFAE PGLL +A +VDR+GRK SM  M    CIFLLPL++ QS  + T
Sbjct:   336 NDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITT 394

Query:   301 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 360
              LL G R+     F +  I+APEIYPT++R+TG GV  +VGRIGG++CPLVAVGLV  CH
Sbjct:   395 VLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCH 454

Query:   361 QTXXXXXXXXXXXXXXXXXXXXPFETKGKELVNTIDGVSNSKQ 403
             QT                    PFET G++L    D +S SK+
Sbjct:   455 QTIAVLLFEVVILVSGICVCLFPFETSGRDLT---DSISASKE 494

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0090416 "nicotinate transporter activity" evidence=IDA

GO:0090417 "N-methylnicotinate transporter activity" evidence=IDA

GO:2001142 "nicotinate transport" evidence=IDA

GO:2001143 "N-methylnicotinate transport" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

ZFIN|ZDB-GENE-070705-359 svopb "SV2 related protein homolog b (rat)" [Danio rerio (taxid:7955)]

 Score = 270 (100.1 bits), Expect = 3.6e-45, Sum P(2) = 3.6e-45
 Identities = 65/210 (30%), Positives = 106/210 (50%)

Query:   190 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXEN-----VQDAS 244
             LF P + +TT+L+W ++F ++F+YYG+VLL                  E+      Q  +
Sbjct:   193 LFIPEYRRTTLLVWCIWFFSAFLYYGLVLLTTELFQAGSACVTENSNIEHQCSLMCQHLT 252

Query:   245 V--YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTAL 302
             +  Y+++  T+FAE PGLL A  +V+R+ R+ SM I F    + +LPL      I+LT  
Sbjct:   253 IDDYLDLLWTTFAEFPGLLVALWMVNRISRRKSMVICFSLFTVCILPLYACTHRIVLTVF 312

Query:   303 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQ 361
             +  AR      + IA ++ PE++PT+ R+ G G +  + R+G +V P +A V L +S + 
Sbjct:   313 IFIARTSINAGWQIAYVYTPEVFPTATRAIGIGTSSGMSRVGALVTPFIAQVLLKSSVYL 372

Query:   362 TXXXXXXXXXXXXXXXXXXXXPFETKGKEL 391
             T                    P ET+G+ L
Sbjct:   373 TLSVYLIFGLLGTAACWAL--PMETEGRSL 400

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NIB3 SVOP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 270 (100.1 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   190 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 245
             LF+P F  TT+LLW ++F N+F YYG+VLL                  E     S+    
Sbjct:   314 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTEFFQAGDVCSISSRRKEVKAKCSLTCEY 373

Query:   246 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLVTLQSNILL 299
                  Y ++  T+ +E PG+L    ++DR+GRK +M +  F+F    LL  + +  N+L 
Sbjct:   374 LTEEDYTDLLWTTLSEFPGVLVTLWIIDRIGRKKTMALSFFVFSFCSLLLFLCVGRNVL- 432

Query:   300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 358
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   433 TVLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 492

Query:   359 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 391
              + T                    P ETKG+ L
Sbjct:   493 VYLTLAVYSGCCLLAAVASFFL--PIETKGRGL 523

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   190 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 245
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   243 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 302

Query:   246 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 299
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N +L
Sbjct:   303 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRN-ML 361

Query:   300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 358
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   362 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 421

Query:   359 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 391
              + T                    P ETKG+ L
Sbjct:   422 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 452

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

RGD|620277 Svop "SV2 related protein" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 4.2e-41, Sum P(2) = 4.2e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   190 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 245
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   246 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 299
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVL- 426

Query:   300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 358
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   359 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 391
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRAL 517

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|F1LPX1 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 4.2e-41, Sum P(2) = 4.2e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   190 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 245
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   246 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 299
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVL- 426

Query:   300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 358
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   359 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 391
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRAL 517

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9Z2I7 Svop "Synaptic vesicle 2-related protein" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 4.2e-41, Sum P(2) = 4.2e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   190 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 245
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 367

Query:   246 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 299
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVL- 426

Query:   300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 358
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   359 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 391
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRAL 517

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 4.3e-41, Sum P(2) = 4.3e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   190 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 245
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEY 367

Query:   246 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 299
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N +L
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRN-ML 426

Query:   300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 358
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   359 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 391
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 517

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)]

 Score = 263 (97.6 bits), Expect = 4.4e-41, Sum P(2) = 4.4e-41
 Identities = 69/213 (32%), Positives = 103/213 (48%)

Query:   190 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 245
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   308 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEY 367

Query:   246 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTLQSNILL 299
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F IF    LL  + +  N+L 
Sbjct:   368 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVL- 426

Query:   300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 358
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   427 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 486

Query:   359 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 391
              + T                    P ETKG+ L
Sbjct:   487 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 517

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=ISS

UNIPROTKB|G3MZU5 SVOP "Synaptic vesicle 2-related protein" [Bos taurus (taxid:9913)]

 Score = 262 (97.3 bits), Expect = 5.6e-41, Sum P(2) = 5.6e-41
 Identities = 68/213 (31%), Positives = 103/213 (48%)

Query:   190 LFSPRFFKTTILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---- 245
             LF+P F  TT+LLW ++F N+F YYG+VLL                        S+    
Sbjct:   307 LFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEY 366

Query:   246 -----YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFI-FVCIFLLPLVTLQSNILL 299
                  Y+++  T+ +E PG+L    ++DR+GRK +M + F+ F    LL  + +  N +L
Sbjct:   367 LSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRN-ML 425

Query:   300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTS 358
             T LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S
Sbjct:   426 TLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS 485

Query:   359 CHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 391
              + T                    P ETKG+ L
Sbjct:   486 VYLTLAVYSGCCLLAALASCFL--PIETKGRGL 516

GO:0016021 "integral to membrane" evidence=IEA

GO:0015075 "ion transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940M4	OCT7_ARATH	No assigned EC number	0.5037	0.9485	0.774	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_164000007 hypothetical protein (492 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-63
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	5e-28
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	8e-27
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-19
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	2e-17
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	1e-11
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	7e-11
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	4e-10
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-10
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	4e-09
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	4e-08
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	6e-08
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-07
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-06
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	1e-05
TIGR00881	379	TIGR00881, 2A0104, phosphoglycerate transporter fa	2e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	4e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-04
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	4e-04
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	6e-04
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	0.001
PRK10406	432	PRK10406, PRK10406, alpha-ketoglutarate transporte	0.001

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score =  210 bits (536), Expect = 6e-63
 Identities = 119/391 (30%), Positives = 181/391 (46%), Gaps = 59/391 (15%)

Query: 13  LVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTF 71
           LVT V+G+L+AFSPNY   L+ R L G G+G   V       EF+P   R     +   F
Sbjct: 165 LVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVF 224

Query: 72  WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHN 131
           ++ G V    +A+ +     WRWL    ++P F+  +   F+PESPR+L ++GRI +A  
Sbjct: 225 FSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALK 281

Query: 132 ILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF 191
           IL +IA+ N   LP+             E  +      LSS++K          SFL LF
Sbjct: 282 ILQRIAKINGKKLPA-------------EVLSLSLEKDLSSSKK--------QYSFLDLF 320

Query: 192 -SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVF 250
            +P   KTT+ L +L+F  +F YYG+VL    L G                  ++Y+++F
Sbjct: 321 RTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG------------------NIYLDLF 362

Query: 251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIF--VCIFLLPLVTLQSNILLTALLSGARM 308
           I+   ELP  L   LL+DR+GR+ +M    +   V + LL  V +    L TAL    + 
Sbjct: 363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKF 422

Query: 309 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLL 368
                F +  ++  E+YPT +R+ G GV   + R+G ++ P +               L 
Sbjct: 423 GITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLV--------YLGEKWLF 474

Query: 369 EALIVLSVVVILLIPF-----ETKGKELVNT 394
             L++   + +L         ETKG  L  T
Sbjct: 475 LPLVLFGGLALLAGILTLFLPETKGVPLPET 505

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score =  113 bits (285), Expect = 5e-28
 Identities = 90/357 (25%), Positives = 144/357 (40%), Gaps = 50/357 (14%)

Query: 4   GRMSILGGALVTFVAG-LLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNR 61
           GR  +L  +++ F    LL A + N   LLILR LAG GLG       +   E+ P   R
Sbjct: 80  GRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFR 139

Query: 62  GKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAI-PAFVLLIFIVFMPESPRYL 120
           G  + +    +  G+     LA  ++P+  WR L  +  I P  +LL+ + F+PES  +L
Sbjct: 140 GTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFL 199

Query: 121 CTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVR 180
            +K   T    I++ IA   Q    S                       L   +     +
Sbjct: 200 VSKRPET-VRRIVNAIAPQMQAEAQSA----------------------LPEQKATQGTK 236

Query: 181 KSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV----LLASELSGSQSKCSSSILL 236
           +S    F  LF  +  + T+LLW+LYF      Y +      L  EL  S S   ++   
Sbjct: 237 RS---VFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL--AATGG 291

Query: 237 SENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLVTLQS 295
                         + +F  + G +    L DR+G +++  + +   V   L+       
Sbjct: 292 -------------ALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSP 338

Query: 296 NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA 352
            +LL      A  F  G            YPT++R+TG G A  +GR+G ++ P++A
Sbjct: 339 TLLLLLGAI-AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILA 394

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  110 bits (278), Expect = 8e-27
 Identities = 87/409 (21%), Positives = 166/409 (40%), Gaps = 64/409 (15%)

Query: 5   RMSILGGALVTFVAGLLSAFSP--NYISLLILRGLAGAGLGSGHVFFSWFM-EFVPPSNR 61
           + S+L G ++  +  LL  F+   ++  L++ R + G G+G   V    ++ E  P   R
Sbjct: 76  KKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLR 135

Query: 62  GKWMVVFSTFWTFGSVSEAALAWIV---MPILTWRWLLALSAIPAFVLLIFIVFMPESPR 118
           G    ++    TFG +  A +   +        WR  L L  +PA +LLI ++F+PESPR
Sbjct: 136 GALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPR 195

Query: 119 YLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTT 178
           +L  KG++ +A  +L K+              SD   ++ EE  + E +           
Sbjct: 196 WLVLKGKLEEARAVLAKL-----------RGVSDVDQEIQEEKDSLERS----------- 233

Query: 179 VRKSGFSSFLMLFSPRFFKTTILLWVLYFG-------NSFVYYGIVLLASELSGSQSKCS 231
             ++  +S+L LF  +  +  +L+ V+          N+  YY   +             
Sbjct: 234 -VEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFE----------- 281

Query: 232 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK-------LSMTIMFIFVC 284
           +  L    +    V +  F+ +F        A  LVDR GR+         M I F+ + 
Sbjct: 282 TLGLSDSLLVTIIVGVVNFVFTFI-------AIFLVDRFGRRPLLLLGAAGMAICFLVLG 334

Query: 285 IFLLPLVTLQ--SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR 342
           + LL +   +    + +  +L     F++G   +  +   E++P  +R     +A A   
Sbjct: 335 VALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANW 394

Query: 343 IGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 391
           +   +   +   +  +      ++    L++  + V   +P ETKG+ L
Sbjct: 395 LANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVP-ETKGRTL 442

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 95/418 (22%), Positives = 161/418 (38%), Gaps = 69/418 (16%)

Query: 4   GRMSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSGHVFFSWFM-EFVPPS 59
            + S+L  AL+  +  +L    AF+ +   L++ R L G G+G        ++ E  P +
Sbjct: 100 RKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKA 159

Query: 60  NRGKWMVVFSTFWTFGSVSEAALAWIVMPI-------LTWRWLLALSAIPAFVLLIFIVF 112
            RG    ++    TFG +    +A+            L WR  L L  IPA +L + + F
Sbjct: 160 LRGALTSLYQLAITFGIL----VAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFF 215

Query: 113 MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSS 172
           +PESPR+L  KGR+ +A   L ++                      E+    +E  L+  
Sbjct: 216 LPESPRWLVGKGRVEEARKSLARL-----------------RGTSGEDKELLDELELIDI 258

Query: 173 ARKRTTVRKSGFSSFLMLFS------PRFFKTTILLWVLYF--GNSFVYYGIVLLASELS 224
            R      +S   S+  LFS       R F   +L W   F   N+ +YY   +   E +
Sbjct: 259 KRSIEK--RSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF--ENA 314

Query: 225 GSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK----------- 273
           G  +  +        +    V    F  +F        A  LVDR GR+           
Sbjct: 315 GVSTDHAF-------LVSIIVGAVNFAFTF-------VAIFLVDRFGRRPLLLIGAAGMA 360

Query: 274 LSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG 333
           + + ++ I    F+        N+ +  +L     F+MG   +  +   EI+P S+R  G
Sbjct: 361 ICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKG 420

Query: 334 AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL 391
             +A A   +   +   +   ++ S       +    L VL ++ +     ETKG+ L
Sbjct: 421 ISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 84.3 bits (208), Expect = 2e-17
 Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 21/233 (9%)

Query: 5   RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGK 63
           +  +L    V       S+F   Y   L  R L+G G+G    + FS+F EF+    RG+
Sbjct: 232 KQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGE 291

Query: 64  WMVVFSTFWTFGSVSEAALAWIVMP-------------ILTWRWLLALSAIPAFVLLIFI 110
            +     FW  G +  AA+AW ++P               +WR  + + A P    +  +
Sbjct: 292 HLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGAL 351

Query: 111 VFMPESPRYLCTKGRITDAHNILDKIAQFNQTSL--PSGNLTSDGTNDLDEEFSTSEETP 168
            FMPESPR+    G+  +A  IL  I   N  +   P    + +    + +E    E   
Sbjct: 352 TFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIES 411

Query: 169 LLSSARKRTTVRKSG-----FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGI 216
              +  +R  VR        + +FL  F+P   + TI L  ++F  SF YYG+
Sbjct: 412 DTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGL 464

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 16/212 (7%)

Query: 173 ARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS 232
                  +++       LF       T+LLW+ YF    V Y    L + L         
Sbjct: 198 QAAGAGKQRAPVLR--ALFGEGRATATLLLWISYFFTLIVLY---FLLNWLP-------- 244

Query: 233 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT 292
           S+L+ + +  +   +     +     G L    L+DR+  +  + +++  +   L  L  
Sbjct: 245 SLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAA 304

Query: 293 LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA 352
             S   +      A +F +G   +    AP  YPT +R TG G A AVGR+G M  PL+A
Sbjct: 305 APSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLA 364

Query: 353 VGLVTSCHQTAAILLLEA--LIVLSVVVILLI 382
            G + +  ++   ++  +  +I+++ +  LL+
Sbjct: 365 -GQLLALGRSTVGVIGASIPVILVAALAALLL 395

Length = 406

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 83/383 (21%), Positives = 149/383 (38%), Gaps = 31/383 (8%)

Query: 12  ALVTFVAG-LLSAFSPNYISLLILR-----GLAGA-GLGSGHVFFSWFMEFVPPSNRGKW 64
           ++V F  G L   F+P Y +L I R     G+AG  G  + +V  SW     P   R K 
Sbjct: 91  SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW-----PKHLRNKA 145

Query: 65  MVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG 124
                + ++ G+V  A +  +V+P+  WR L  +  +P    L     +PE+  +     
Sbjct: 146 SGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHA 205

Query: 125 RITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF 184
                  ++D + +  +  + +  LT      L   F+ + +   + +      +  + F
Sbjct: 206 GKAPVRTMVDILYR-GEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVL--GLLCAAIF 262

Query: 185 SSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDAS 244
            SF++  S + + T ++L V           +VL A   S        + L ++   D  
Sbjct: 263 ISFMVQSSGKRWPTGVMLMV-----------VVLFAFLYSWPIQALLPTYLKTDLGYDPH 311

Query: 245 VYINV-FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI--LLTA 301
              NV F + F    G      L D +G + +     +   + ++P+  +      +L  
Sbjct: 312 TVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL 371

Query: 302 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ 361
           LL   +M   G   +        + T  R+ G G  Y VG +GG + P++   +      
Sbjct: 372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL 431

Query: 362 TAAILLLEALIVLSVVVILLIPF 384
             A+  L     L+ VVILLI  
Sbjct: 432 GTALASLS--FSLTFVVILLIGL 452

Length = 496

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 61.3 bits (149), Expect = 4e-10
 Identities = 79/327 (24%), Positives = 128/327 (39%), Gaps = 60/327 (18%)

Query: 92  WRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS 151
           WR L+   A+PA + L F + +PE+PRY       T       + A  + +++    +  
Sbjct: 203 WRILIGFGAVPALLALYFRLTIPETPRY-------TADVAKDVEQAASDMSAVLQVKI-- 253

Query: 152 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSF 211
           +   D  E+ ST+ E P  S          S F  F   F  R  K  +     +F    
Sbjct: 254 EAEPDEVEKASTAVEVPKASW---------SDF--FTHFFKWRHGKHLLGTAGSWFLLDI 302

Query: 212 VYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAEL--------PGLLTA 263
            +YG+ L       +Q    S+I  S      + Y  ++ T+   L        PG    
Sbjct: 303 AFYGVNL-------NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVT 355

Query: 264 ALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAP- 322
             LVD +GRK    + F  + +    L    +++     L+   ++ +     AN F P 
Sbjct: 356 VFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLA---IYVL-AQFFAN-FGPN 410

Query: 323 --------EIYPTSMRSTGAGVAYAVGRIGGMV-----CPLVAVGLVTSCHQTAA----- 364
                   E++PT  RST  G++ A G+ G ++       L   G  T  + T       
Sbjct: 411 ATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHV 470

Query: 365 ILLLEALIVLSVVVILLIPFETKGKEL 391
           + +    + L ++  LLIP ETKGK L
Sbjct: 471 LEIFALFMFLGILFTLLIP-ETKGKSL 496

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 50/203 (24%), Positives = 82/203 (40%), Gaps = 11/203 (5%)

Query: 182 SGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQ 241
           +     L L      +  +LL + +F  SF YYG++             S+         
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA--------- 210

Query: 242 DASVYINVFITSFAELPGLLTAALLVDRVGRKLS-MTIMFIFVCIFLLPLVTLQSNILLT 300
            A   + + +     + G L   LL DR+GR+   + I  +   + LL L    S  LL 
Sbjct: 211 -AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269

Query: 301 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 360
             L          F      A E+ P   R T +G+    G +GG + PL+A  L+ +  
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329

Query: 361 QTAAILLLEALIVLSVVVILLIP 383
                L+L AL +L+ +++LL+P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 39/139 (28%)

Query: 8   ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGK---- 63
           I+GG  V    GL S  SP YI+                       E  P   RGK    
Sbjct: 128 IIGGIGV----GLASMLSPMYIA-----------------------EIAPAHIRGKLVSF 160

Query: 64  --WMVVFST----FWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESP 117
             + ++F      F  +        +W+      WR++ A  AIPA + L+ + F+PE+P
Sbjct: 161 NQFAIIFGQLVVYFVNYFIARSGDASWLNT--DGWRYMFASEAIPALLFLMLLYFVPETP 218

Query: 118 RYLCTKGRITDAHNILDKI 136
           RYL ++G+   A  IL KI
Sbjct: 219 RYLMSRGKQEQAEGILRKI 237

Length = 479

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 264 ALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---QSNILL-TALLSGARMFSMGTFIIANI 319
             L DR+GR+  + I  +   +  +PL+       +  L   L+ G  +           
Sbjct: 276 GALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGS 335

Query: 320 FAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSCHQTAAI---LLLEALIVL 374
           F PE++PT +R TGA +AY +   I G   P +A  LV       AI   L   ALI L
Sbjct: 336 FLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIGL 394

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 17  VAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWF-MEFVPPSNRGKWMVVFSTFWTFG 75
              L   F+P YI++ I R + G G+G  +   + + +E  P   R K   +  + +  G
Sbjct: 89  AGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVG 148

Query: 76  SVSEAALAWIVMPI--LTWRWLLALSAIPAFVLLIFIVFMPES 116
           +V  A +  +V+P+    WR L  +S +P    L     +PE+
Sbjct: 149 AVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEA 191

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 53.4 bits (128), Expect = 1e-07
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 2/147 (1%)

Query: 245 VYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS 304
           +Y   F+ + A LPG + +ALL+D++GR   +    +  CI    L    S   + ALL 
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLC 656

Query: 305 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAA 364
                S+  +   ++   E+YP+  R+T  G   A+ +   ++  L+    V    + A 
Sbjct: 657 LFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV-GITKAAP 715

Query: 365 ILLLEALIVLSVVVILLIPFETKGKEL 391
           IL   A +    ++ L +P +T+G+ L
Sbjct: 716 ILFASAALACGGLLALKLP-DTRGQVL 741

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 5   RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGK 63
           R  +L G L+  +  LL AF+ +   LL+ R L G G G+ +    +   E+ PP  RG+
Sbjct: 64  RRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGR 123

Query: 64  WMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMP 114
            + +FS  +  G++    L  ++   L WRWL  + AI   +L + ++F+ 
Sbjct: 124 ALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 55/347 (15%), Positives = 104/347 (29%), Gaps = 68/347 (19%)

Query: 5   RMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGK 63
           R  +L G L+  +  LL  F+ +   LL+LR L G G G+      +   ++ PP  RG+
Sbjct: 62  RRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGR 121

Query: 64  WMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTK 123
            + + S  +  G+     L  ++  +  WR    + AI A +  +    +          
Sbjct: 122 ALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAALL---------- 171

Query: 124 GRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG 183
                                                       P     +         
Sbjct: 172 ---------------------------------------LPRPPPESKRPKPAEEAPAPL 192

Query: 184 FSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA 243
             ++ +L         + L +  F    +   + L    L                +   
Sbjct: 193 VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL---------------GLSAL 237

Query: 244 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF---IFVCIFLLPLVTLQSNILLT 300
              + + +       G L    L DR+GR+  + +     I   + L  L   +S++ L 
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLL 297

Query: 301 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMV 347
             L      +   F   N    ++ P   R T +G+    G +GG +
Sbjct: 298 VALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344

Length = 346

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 50/230 (21%), Positives = 91/230 (39%), Gaps = 21/230 (9%)

Query: 165 EETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLY--FGNSFVYYGIVLLAS 221
           EE  L    +   +       S   LF+  +F  T  +  VL+  FG ++  +G  LL +
Sbjct: 199 EEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFG--LLPT 256

Query: 222 ELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFI 281
            L+G            E      V   +   +F  + G +   L  DR+G K + +I  +
Sbjct: 257 YLAG------------EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLL 304

Query: 282 FVCIFLLPL--VTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYA 339
              +F+ PL  +   + +LL A L G    ++G   +   F  + +P  +R  G G+ Y 
Sbjct: 305 MSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYN 364

Query: 340 VGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK 389
           +    G    + A  L  +    AA+  + A    +  ++L+I      +
Sbjct: 365 LAATSGTFNSMAATWLGITMGLGAALTFIVAF--WTATILLIIGLSIPDR 412

Length = 426

>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 70/355 (19%), Positives = 123/355 (34%), Gaps = 69/355 (19%)

Query: 11  GALVTFVAGLLSAFSPNYISLLILRGLAG--AGLG---SGHVFFSWFMEFVPPSNRGKWM 65
           G ++  +  L   FS +   +  L  L G   G+G    G     WF      S RG W+
Sbjct: 66  GLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWF----SRSERGTWV 121

Query: 66  VVFSTFWTFGSVSEAALAWIVMPIL-TWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTK 123
             ++     G      L    +  L +W W+  +  I A ++ LI  + + +SP+     
Sbjct: 122 SFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ----- 176

Query: 124 GRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSG 183
                                      S G    +E    +EE    +  ++    +K  
Sbjct: 177 ---------------------------SCGLPPAEEMP--NEEPDGDAEKKEEELTKKQI 207

Query: 184 FSSFLMLFSPRFFKTTILLWVLYFGNSFVYY--GIVLLASELSGSQSKCSSSILLSENVQ 241
           F  +++L          +LW +  G  FVY     +L  S L  +Q K  S         
Sbjct: 208 FLQYVLL--------NKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKE------- 252

Query: 242 DASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTA 301
            AS    ++      L G L A  L D++       +   F+ + ++ L+    N     
Sbjct: 253 KASWAFTLY--ELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANP 310

Query: 302 LLSGARMFSMGTFI-----IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLV 351
           L+    +F++G  +     +  + A E+ P     T AG       +GG++  L 
Sbjct: 311 LMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLP 365

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 8/182 (4%)

Query: 202 LWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLL 261
           L +L+ G         LL+             +     +  +   + V   S     G L
Sbjct: 1   LLLLFLGFFLSGLDRGLLSP--------ALPLLAEDLGLSASQAGLIVSAFSLGYALGSL 52

Query: 262 TAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFA 321
            A  L DR GR+  + +  +   +  L L    S  LL        +     +  A    
Sbjct: 53  LAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALI 112

Query: 322 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL 381
            E +P   R    G+  A   +G ++ PL+   L  S       L+L  L +L  +++L 
Sbjct: 113 AEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172

Query: 382 IP 383
           + 
Sbjct: 173 LL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 33/142 (23%), Positives = 53/142 (37%)

Query: 249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARM 308
           +   S         A  L DR GR+  + I  +   + LL L+   S  LL  L     +
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 309 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLL 368
                F  A     + +P   R    G+  A   +G  + PL+   L +     AA L+L
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLIL 157

Query: 369 EALIVLSVVVILLIPFETKGKE 390
             L +L+ V+  L+      + 
Sbjct: 158 AILALLAAVLAALLLPRPPPES 179

Length = 346

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 42.2 bits (100), Expect = 4e-04
 Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 9/118 (7%)

Query: 5   RMSILGGALVTFVAG-LLSAFSPNYISLLILRGLAGAGLGSGHVFFS----WFMEFVPPS 59
           R  +L G L  F+   LLSA +P++  LL+ R LAG   G   VF+S         VPP 
Sbjct: 77  RRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHG---VFWSIAAALAARLVPPG 133

Query: 60  NRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWL-LALSAIPAFVLLIFIVFMPES 116
            RG+ + +  T  T  +V    L   +  +  WR   LA++ +    LL+    +P S
Sbjct: 134 KRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLPPS 191

Length = 394

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 1/104 (0%)

Query: 249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI-LLTALLSGAR 307
           V  ++   + G      L D +GR+ +     +   + ++P+  + +N+ +L   L   +
Sbjct: 280 VVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQ 339

Query: 308 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLV 351
           M   G + I      E +PT  R+ G G  Y +G +GG + P++
Sbjct: 340 MLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPII 383

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 6/113 (5%)

Query: 8   ILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLG-SGHVFFSWFMEFVPPSNRGKWMV 66
           +L G  +  ++  + A S N   L+I R L G G   +     +   +  PP  RG  + 
Sbjct: 31  LLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALG 90

Query: 67  VFSTFWTFGSVSEAALAWIVMPILTWRWL---LALSAIPAFVLLIFIVFMPES 116
           + S     G +    L  ++   L WR     LA+ A+ AF+LL F   +PE+
Sbjct: 91  LMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF--LLPET 141

Length = 141

>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 21/152 (13%)

Query: 259 GLLTAALLV------------DRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGA 306
           G++TAAL V            D++GR+ SM        +F +P+++   N+       G 
Sbjct: 283 GIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGL 342

Query: 307 RMFSMGTFI------IANIFAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSC 359
            M ++   I      I+ I   E++P  +R+ G G++YAV   + G     VA+ L +  
Sbjct: 343 VMCAL--LIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIG 400

Query: 360 HQTAAILLLEALIVLSVVVILLIPFETKGKEL 391
            +TA    +  + V++ +V L++  + KG  L
Sbjct: 401 METAFFWYVTLMAVVAFLVSLMLHRKGKGMRL 432

Length = 432

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
PRK09952	438	shikimate transporter; Provisional	99.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.95
PRK12307	426	putative sialic acid transporter; Provisional	99.95
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.95
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.95
TIGR00891	405	2A0112 putative sialic acid transporter.	99.94
PRK11663	434	regulatory protein UhpC; Provisional	99.94
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.94
TIGR00895	398	2A0115 benzoate transport.	99.94
TIGR00893	399	2A0114 d-galactonate transporter.	99.93
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.93
PRK10489	417	enterobactin exporter EntS; Provisional	99.92
PRK03545	390	putative arabinose transporter; Provisional	99.92
PRK03893	496	putative sialic acid transporter; Provisional	99.92
PRK09705	393	cynX putative cyanate transporter; Provisional	99.92
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.92
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.91
PRK05122	399	major facilitator superfamily transporter; Provisi	99.91
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.91
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.91
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.91
PLN00028	476	nitrate transmembrane transporter; Provisional	99.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.9
PRK03699	394	putative transporter; Provisional	99.9
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.89
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.89
TIGR00900	365	2A0121 H+ Antiporter protein.	99.89
PRK12382	392	putative transporter; Provisional	99.88
PRK11010	491	ampG muropeptide transporter; Validated	99.88
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.88
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.87
PRK15011	393	sugar efflux transporter B; Provisional	99.87
PRK09874	408	drug efflux system protein MdtG; Provisional	99.87
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.87
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.87
PRK10091	382	MFS transport protein AraJ; Provisional	99.87
PRK10504	471	putative transporter; Provisional	99.86
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.86
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.86
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.85
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.85
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.85
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.85
KOG2533	495	consensus Permease of the major facilitator superf	99.84
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.84
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.84
PRK11043	401	putative transporter; Provisional	99.84
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.84
KOG2532	466	consensus Permease of the major facilitator superf	99.84
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.84
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.82
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.82
PRK03633	381	putative MFS family transporter protein; Provision	99.82
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.82
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.81
TIGR00901	356	2A0125 AmpG-related permease.	99.81
PRK10133	438	L-fucose transporter; Provisional	99.8
PRK11902	402	ampG muropeptide transporter; Reviewed	99.8
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.8
PRK10054	395	putative transporter; Provisional	99.79
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.78
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.77
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.76
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.76
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.76
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.75
PRK09528	420	lacY galactoside permease; Reviewed	99.74
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.73
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.72
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.69
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.68
PTZ00207	591	hypothetical protein; Provisional	99.66
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.65
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.65
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.64
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.63
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.62
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.62
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.61
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.59
KOG2615	451	consensus Permease of the major facilitator superf	99.56
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.56
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.52
TIGR00805	633	oat sodium-independent organic anion transporter.	99.51
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.5
PRK09669	444	putative symporter YagG; Provisional	99.49
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.49
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.45
PRK11462	460	putative transporter; Provisional	99.42
PF13347	428	MFS_2: MFS/sugar transport protein	99.41
PRK10429	473	melibiose:sodium symporter; Provisional	99.41
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.4
PRK10642	490	proline/glycine betaine transporter; Provisional	99.38
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.38
PLN00028	476	nitrate transmembrane transporter; Provisional	99.28
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.27
COG2211	467	MelB Na+/melibiose symporter and related transport	99.27
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.24
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.21
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.2
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.19
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.19
PRK09848	448	glucuronide transporter; Provisional	99.18
TIGR00895	398	2A0115 benzoate transport.	99.18
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.17
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.17
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.16
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.16
PRK10054	395	putative transporter; Provisional	99.15
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.15
PRK11663	434	regulatory protein UhpC; Provisional	99.14
PRK10504	471	putative transporter; Provisional	99.14
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.14
TIGR00893	399	2A0114 d-galactonate transporter.	99.12
PRK03699	394	putative transporter; Provisional	99.12
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.11
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.11
PRK12307	426	putative sialic acid transporter; Provisional	99.11
TIGR00891	405	2A0112 putative sialic acid transporter.	99.1
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.09
PRK03545	390	putative arabinose transporter; Provisional	99.08
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.08
PRK03893	496	putative sialic acid transporter; Provisional	99.08
TIGR00900	365	2A0121 H+ Antiporter protein.	99.07
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.04
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.03
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.02
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.99
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.99
PRK10091	382	MFS transport protein AraJ; Provisional	98.99
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.99
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.99
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.97
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.94
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.94
PRK09874	408	drug efflux system protein MdtG; Provisional	98.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.91
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.9
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.89
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.87
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.87
PRK11043	401	putative transporter; Provisional	98.87
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.86
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.86
KOG2563	480	consensus Permease of the major facilitator superf	98.85
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.83
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.83
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.82
PRK10489	417	enterobactin exporter EntS; Provisional	98.81
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.81
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.8
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.79
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.78
TIGR00898	505	2A0119 cation transport protein.	98.76
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.75
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.74
PRK15075	434	citrate-proton symporter; Provisional	98.74
PRK03633	381	putative MFS family transporter protein; Provision	98.73
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.72
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.72
PRK05122	399	major facilitator superfamily transporter; Provisi	98.71
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.69
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.68
PRK09952	438	shikimate transporter; Provisional	98.67
PRK09705	393	cynX putative cyanate transporter; Provisional	98.67
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.66
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.66
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.65
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.64
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.64
KOG2615	451	consensus Permease of the major facilitator superf	98.63
PRK12382	392	putative transporter; Provisional	98.62
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.59
PRK09528	420	lacY galactoside permease; Reviewed	98.59
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.58
PRK11010	491	ampG muropeptide transporter; Validated	98.57
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.56
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.54
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.51
PRK15011	393	sugar efflux transporter B; Provisional	98.5
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.5
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.49
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.48
PRK10133	438	L-fucose transporter; Provisional	98.48
TIGR00901	356	2A0125 AmpG-related permease.	98.47
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.47
PTZ00207	591	hypothetical protein; Provisional	98.43
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.43
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.37
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.33
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.32
KOG0254	513	consensus Predicted transporter (major facilitator	98.3
PRK11902	402	ampG muropeptide transporter; Reviewed	98.29
KOG0569	485	consensus Permease of the major facilitator superf	98.28
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.11
KOG2532	466	consensus Permease of the major facilitator superf	98.09
TIGR00805	633	oat sodium-independent organic anion transporter.	98.08
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.07
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.03
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.99
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.98
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.88
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.87
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.86
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.86
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.78
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.77
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.74
KOG2533	495	consensus Permease of the major facilitator superf	97.61
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.54
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.54
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.5
PRK09669	444	putative symporter YagG; Provisional	97.5
COG0477	338	ProP Permeases of the major facilitator superfamil	97.43
KOG3810	433	consensus Micronutrient transporters (folate trans	97.41
KOG3762	618	consensus Predicted transporter [General function	97.41
KOG3626	735	consensus Organic anion transporter [Secondary met	97.39
PF13347	428	MFS_2: MFS/sugar transport protein	97.39
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.37
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.33
PRK11462	460	putative transporter; Provisional	97.31
PRK10429	473	melibiose:sodium symporter; Provisional	97.22
PRK09848	448	glucuronide transporter; Provisional	97.19
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.09
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	97.05
COG2211	467	MelB Na+/melibiose symporter and related transport	96.86
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.83
KOG2563	480	consensus Permease of the major facilitator superf	96.55
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.52
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.45
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.43
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	96.42
KOG3762	618	consensus Predicted transporter [General function	96.38
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.29
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.25
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.25
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.86
COG2270	438	Permeases of the major facilitator superfamily [Ge	95.82
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	95.48
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	95.45
KOG0637	498	consensus Sucrose transporter and related proteins	95.22
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.15
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	94.98
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.24
COG0477	338	ProP Permeases of the major facilitator superfamil	93.99
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	93.33
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	92.79
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	92.4
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	91.64
PF12832	77	MFS_1_like: MFS_1 like family	90.98
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	90.81
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.66
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	89.89
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	87.79
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	86.58
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	83.87
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	80.4

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=8.7e-52  Score=363.78  Aligned_cols=380  Identities=38%  Similarity=0.610  Sum_probs=319.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   80 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   80 (408)
                      +.|||+.+.+..+.-++...+.+.++|+..+.++|.+.|+|.|+.++..++..|+.|..+|+..+-.. .+|.+|.+..+
T Consensus       139 ~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea  217 (528)
T KOG0253|consen  139 TIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEA  217 (528)
T ss_pred             hhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHH
Confidence            36999999999999999999999999999999999999999999888888889999999999988777 99999999999


Q ss_pred             HHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcccc
Q 015377           81 ALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEE  160 (408)
Q Consensus        81 ~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (408)
                      .+++.++...||||.....+.|..+...+.+++||||||++.+|+.+||.+.++++++.|+...|...+....+++.+++
T Consensus       218 ~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e  297 (528)
T KOG0253|consen  218 LLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE  297 (528)
T ss_pred             HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence            99999999999999999889999998999999999999999999999999999999999998888766654443333222


Q ss_pred             cCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc----
Q 015377          161 FSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILL----  236 (408)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----  236 (408)
                      ..+      ..+.+.  +..|+.......+++|+++|+++++|.++++|.+.||+..++...+.+.-..|+.....    
T Consensus       298 ~~~------~~~~~~--~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e  369 (528)
T KOG0253|consen  298 ESD------LDDSKS--SAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTE  369 (528)
T ss_pred             hhc------hhhhhh--ccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhH
Confidence            111      111111  11122223456889999999999999999999999999999988776544333332110    


Q ss_pred             --c---cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 015377          237 --S---ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSM  311 (408)
Q Consensus       237 --~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                        .   -...+..-|.+.++.++.++||.++.+++.||+|||+.+..++++++++.+.+....+......+++...+|..
T Consensus       370 ~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis  449 (528)
T KOG0253|consen  370 LETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS  449 (528)
T ss_pred             HHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh
Confidence              0   01223445889999999999999999999999999999999999999988887776666666677888888888


Q ss_pred             hhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccc
Q 015377          312 GTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL  391 (408)
Q Consensus       312 ~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~  391 (408)
                      +.+...|+|++|+|||.+|++|.|.|.+++++|++++|++.  +....+...+..+++.+++++++.+.++|-|||||.+
T Consensus       450 g~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  450 GAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             chheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            99999999999999999999999999999999999999987  3443445688999999999999999999999999975

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-42  Score=326.06  Aligned_cols=363  Identities=22%  Similarity=0.338  Sum_probs=268.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhccCCcchh-hhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAF---SPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~R~l~Gi~~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      +.|||.++.++.++..++++++.+   .+++++++++|++.|+..|.... ...|+.|++|++.||....+.+.+..+|.
T Consensus        86 ~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~  165 (485)
T KOG0569|consen   86 RFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGI  165 (485)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHH
Confidence            479999999999999888877655   58899999999999999998754 45589999999999999999999999999


Q ss_pred             HHHHHHHh--HhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhh-cCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377           77 VSEAALAW--IVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCT-KGRITDAHNILDKIAQFNQTSLPSGNLTSDG  153 (408)
Q Consensus        77 ~l~~~l~~--~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  153 (408)
                      +++..++.  .+++...|++.+.+..+|+++.+....++||||+||.. |||.+||++.+++++..++.+.         
T Consensus       166 ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~---------  236 (485)
T KOG0569|consen  166 LLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEA---------  236 (485)
T ss_pred             HHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchh---------
Confidence            99977764  34577889999999999999999999999999999999 8999999999999975432110         


Q ss_pred             CCCcccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhcc
Q 015377          154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFG------NSFVYYGIVLLASELSGS  226 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~  226 (408)
                        +.+++.++.+++          +..+++..++.+.+ ++++|+...+...+.+.      +.+.+|+..++..     
T Consensus       237 --~~e~~~~e~~~~----------~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~-----  299 (485)
T KOG0569|consen  237 --EIEEMLREIEEE----------ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKT-----  299 (485)
T ss_pred             --HHHHHHHHHHHh----------ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHH-----
Confidence              011100000000          00011112344444 45666665544444443      3345565555432     


Q ss_pred             CCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hhhh---HH--
Q 015377          227 QSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQSN---IL--  298 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~---~~~~---~~--  298 (408)
                      .+          -......+. +...+...++.++++.++.||.|||++++.+...+.++.+.+..   ..+.   +.  
T Consensus       300 aG----------~~~~~a~~a-n~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y  368 (485)
T KOG0569|consen  300 AG----------FTPEEAQYA-NLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSY  368 (485)
T ss_pred             cC----------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            10          011122333 34446677899999999999999999999887777665443321   1111   11  


Q ss_pred             --HHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 015377          299 --LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSV  376 (408)
Q Consensus       299 --~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~  376 (408)
                        ....+.....+..|..+++|.+.+|++|++.|+.+.+++..+.|+.+++..+.++++.+..|. ..|+++.+.+++..
T Consensus       369 ~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~  447 (485)
T KOG0569|consen  369 LCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFL  447 (485)
T ss_pred             HHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHH
Confidence              122223334456788899999999999999999999999999999999999999988887765 67888999999999


Q ss_pred             HHHHhcccccCCccccccccccccc
Q 015377          377 VVILLIPFETKGKELVNTIDGVSNS  401 (408)
Q Consensus       377 ~~~~~~~~et~~~~~~~~~~~~~~~  401 (408)
                      +..++..||||||+..|+.++.+..
T Consensus       448 i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  448 IYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             HHHHHhCcccCCCCHHHHHHHHHhC
Confidence            9999999999999999999876543

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=5.4e-42  Score=343.18  Aligned_cols=389  Identities=25%  Similarity=0.411  Sum_probs=279.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||++++++.+++.++++++++++++..++++|++.|++.|+. ++...+++|++|+++||+..++.+.++.+|.+++
T Consensus       228 R~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila  307 (742)
T TIGR01299       228 KLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYA  307 (742)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999999876 5667789999999999999999999999999999


Q ss_pred             HHHHhHhcc-------------ccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCC
Q 015377           80 AALAWIVMP-------------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPS  146 (408)
Q Consensus        80 ~~l~~~~~~-------------~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  146 (408)
                      +.+++.+.+             ..+||+++++.++|.++.++.++++||||+|+..+||.+||.+.++++++.|.+....
T Consensus       308 ~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~  387 (742)
T TIGR01299       308 AAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGH  387 (742)
T ss_pred             HHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCc
Confidence            988766543             2469999999999988888888899999999999999999999999998776532110


Q ss_pred             --CCccC---CCCCCcccccCCCCCcc--ccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015377          147 --GNLTS---DGTNDLDEEFSTSEETP--LLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLL  219 (408)
Q Consensus       147 --~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (408)
                        .....   +...+.++..+..+...  ..+............+..+..+++++++++++++|.+++...+.||++..|
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w  467 (742)
T TIGR01299       388 PEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVW  467 (742)
T ss_pred             hhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00000   00000000000000000  000000000001112234567889999999999999999999999999999


Q ss_pred             HHhhhccC---C--------------------------------------------------------------------
Q 015377          220 ASELSGSQ---S--------------------------------------------------------------------  228 (408)
Q Consensus       220 ~~~l~~~~---~--------------------------------------------------------------------  228 (408)
                      .|.+....   .                                                                    
T Consensus       468 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  547 (742)
T TIGR01299       468 FPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFK  547 (742)
T ss_pred             HHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhh
Confidence            99763110   0                                                                    


Q ss_pred             CCCccccc--------c-------------------------cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHH
Q 015377          229 KCSSSILL--------S-------------------------ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLS  275 (408)
Q Consensus       229 ~~~~~~~~--------~-------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~  275 (408)
                      .|......        .                         ........+...++.+++.++|.+++++++||+|||++
T Consensus       548 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~  627 (742)
T TIGR01299       548 NCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRM  627 (742)
T ss_pred             ccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            00000000        0                         00001134666777788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHH
Q 015377          276 MTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  355 (408)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l  355 (408)
                      ++.+.++.+++++.+....+......+.++..++..+.++..+.+++|++|++.|+++.|++++.+++|++++|++.+.+
T Consensus       628 l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L  707 (742)
T TIGR01299       628 LAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSF  707 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98887777776655544333222222223333344456678889999999999999999999999999999999998876


Q ss_pred             hhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccc
Q 015377          356 VTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL  391 (408)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~  391 (408)
                      ... +...++++++++.++++++.+++ |||+++.+
T Consensus       708 ~~~-~~~~pf~i~a~~lll~~ll~~~L-PET~~~~l  741 (742)
T TIGR01299       708 VGI-TKAAPILFASAALACGGLLALKL-PDTRGQVL  741 (742)
T ss_pred             HHh-hhHHHHHHHHHHHHHHHHHHHhC-CCCccccc
Confidence            654 34567778888888887777766 79999865

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.1e-39  Score=321.03  Aligned_cols=371  Identities=22%  Similarity=0.295  Sum_probs=249.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWT   73 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   73 (408)
                      |.|||+++.++.+++.+++++++++++      +..++++|++.|++.|.. +....|++|++|+++||+.+++.+.++.
T Consensus        82 ~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~  161 (502)
T TIGR00887        82 KLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQG  161 (502)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence            579999999999999999999988876      789999999999999986 4567789999999999999999999999


Q ss_pred             HHHHHHHHHHhHhcc-----------------------ccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChh-hH
Q 015377           74 FGSVSEAALAWIVMP-----------------------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRIT-DA  129 (408)
Q Consensus        74 ~G~~l~~~l~~~~~~-----------------------~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~-~a  129 (408)
                      +|.++++.++..+..                       .++||+++.++++|+++..+.++++||||+|+..|+|.+ ++
T Consensus       162 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a  241 (502)
T TIGR00887       162 FGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQA  241 (502)
T ss_pred             HHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHH
Confidence            999998887765321                       247999999999999888888889999999999998875 47


Q ss_pred             HHHHHHHHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccc----hhhHHHHHHHHHH
Q 015377          130 HNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS----PRFFKTTILLWVL  205 (408)
Q Consensus       130 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  205 (408)
                      ++.+++.++.+..+   +      .++.++..++  +        +   ..+   ..++++++    +++++.++.++..
T Consensus       242 ~~~~~~~~~~~~~~---~------~~~~~~~~~~--~--------~---~~~---~~~~~l~~~~~~~~~~~~~~~~~~~  296 (502)
T TIGR00887       242 ASDMSAVLQVKIEA---E------PDEVEKASTA--V--------E---VPK---ASWSDFFTHFFKWRHGKHLLGTAGS  296 (502)
T ss_pred             HHHHHHHhcccccc---C------cccccchhcc--c--------c---chh---hhHHHHHHHHhhhHHHHHHHHHHHH
Confidence            76676665321110   0      0000000000  0        0   000   02233332    2333444444555


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCCCcccccc-cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHH
Q 015377          206 YFGNSFVYYGIVLLASELSGSQSKCSSSILLS-ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVC  284 (408)
Q Consensus       206 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~  284 (408)
                      ++.+.+.+|+...+.|.+....+......... ....-........+..++.++|.++.++++||+|||+.++.+..+.+
T Consensus       297 ~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~  376 (502)
T TIGR00887       297 WFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILT  376 (502)
T ss_pred             HHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHH
Confidence            66667788887776665543221110000000 00000011112334445677899999999999999999877665555


Q ss_pred             HHHHHHHhhh---h-hHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc-
Q 015377          285 IFLLPLVTLQ---S-NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-  359 (408)
Q Consensus       285 ~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~-  359 (408)
                      +++..+....   + ............++..+..+..|.+++|++|++.|+++.|+++.+++++++++|.+.+.+.+.. 
T Consensus       377 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~  456 (502)
T TIGR00887       377 VLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGD  456 (502)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccc
Confidence            4433332211   1 1111111122222234556778899999999999999999999999999999999998877632 


Q ss_pred             ---------chhhHHHHHHHHHHHHHHHHHhcccccCCccccccccc
Q 015377          360 ---------HQTAAILLLEALIVLSVVVILLIPFETKGKELVNTIDG  397 (408)
Q Consensus       360 ---------~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~~~~  397 (408)
                               +....+.+++++++++.+.. ++.||||+++++|+.++
T Consensus       457 ~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~~  502 (502)
T TIGR00887       457 PTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSGE  502 (502)
T ss_pred             ccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhCC
Confidence                     22356788888888776654 56689999999887543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=1e-36  Score=300.70  Aligned_cols=349  Identities=34%  Similarity=0.592  Sum_probs=263.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||++++++.++..++++++++++|++.++++|++.|++.|.. +....++.|++|+++|++..++.+.++.+|.+++
T Consensus       153 r~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~  232 (505)
T TIGR00898       153 RFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLL  232 (505)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999999885 5667788999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCccc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  159 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (408)
                      +.+++.+.   +||+.+++.+++.++..+..+++||||+|+..++|.+++++.+++.++.|+.+.+.+..        +.
T Consensus       233 ~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~--------~~  301 (505)
T TIGR00898       233 PLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVL--------SL  301 (505)
T ss_pred             HHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHH--------hh
Confidence            98887764   49999999999988877777889999999999999999999999998876542211000        00


Q ss_pred             ccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015377          160 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  238 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (408)
                         +.+++     . +.+   + +....++++ +++.++.++..+..++...+.+|+...+.+.+.              
T Consensus       302 ---~~~~~-----~-~~~---~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  354 (505)
T TIGR00898       302 ---SLEKD-----L-SSS---K-KQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG--------------  354 (505)
T ss_pred             ---hhhhh-----h-hhc---c-CCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC--------------
Confidence               00000     0 000   0 001233444 466666676677777777777877665544221              


Q ss_pred             CccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhhhhhh
Q 015377          239 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN--ILLTALLSGARMFSMGTFII  316 (408)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  316 (408)
                          .+.+...++.++..+++.++.++++||+|||+.+..+.++.++.++.+....+.  ...........++..+.++.
T Consensus       355 ----~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (505)
T TIGR00898       355 ----GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQM  430 (505)
T ss_pred             ----CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence                224556667778889999999999999999999988777766655444433222  22222333333444455677


Q ss_pred             hhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCcccccc
Q 015377          317 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT  394 (408)
Q Consensus       317 ~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~  394 (408)
                      .+.+.+|++|++.|+++.|+.++++++|++++|++.+ +.+ .+...++.+++++.+++.+..+++ |||++++++|+
T Consensus       431 ~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l-pet~~~~l~~t  505 (505)
T TIGR00898       431 VYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFGGLALLAGILTLFL-PETKGVPLPET  505 (505)
T ss_pred             HHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHHHHHHHHHHHHHcC-cCCCCCCCCCC
Confidence            8899999999999999999999999999999999887 433 345677888888888887776655 69999999874

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.1e-35  Score=292.81  Aligned_cols=367  Identities=22%  Similarity=0.332  Sum_probs=257.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      +.|||++++++.+++.++++++++++|+.+++++|++.|+|.|... +...|.+|.+|++.||...+..+..+.+|.+++
T Consensus       115 ~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~  194 (513)
T KOG0254|consen  115 RIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG  194 (513)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999999999999999999999999999875 556689999999999999999999999999999


Q ss_pred             HHHHhHhccc-cchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPI-LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~-~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      ..+++...+. ++||+++++..+|+++..+..+++||||+||.++||.++|++.+++++..++.+.         +.+.+
T Consensus       195 ~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~---------~~~~~  265 (513)
T KOG0254|consen  195 YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDV---------EVELE  265 (513)
T ss_pred             HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcch---------HHHHH
Confidence            7777765433 5899999999999999877788999999999999999999999999875321100         00000


Q ss_pred             cccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCCCCcccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSF-VYYGIVLLASELSGSQSKCSSSILLS  237 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~  237 (408)
                      +..    .+ .   ..+.....++  ....+++.++.+++..+...+...+.+ .+....++.+.+....          
T Consensus       266 ~~~----~~-~---~~~~~~~~~~--~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~----------  325 (513)
T KOG0254|consen  266 LLK----IK-L---LVEAEVAEGK--ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA----------  325 (513)
T ss_pred             HHH----HH-H---HHhhhccccc--ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc----------
Confidence            000    00 0   0000000000  023345556677767654444333222 2111112222222110          


Q ss_pred             cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hh-h--------hHHH-HHHHH
Q 015377          238 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQ-S--------NILL-TALLS  304 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~---~~-~--------~~~~-~~~~~  304 (408)
                       .... +.....++.++..+++++++.++.||+|||+.++.+.....++++.+..   .. .        .+.. ...+.
T Consensus       326 -g~~~-~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (513)
T KOG0254|consen  326 -GLKS-DTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCL  403 (513)
T ss_pred             -CCCC-chHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHH
Confidence             1111 1145556667778889999999999999999999877666554443321   11 0        1111 11222


Q ss_pred             HHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHH-HHHhcc
Q 015377          305 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVV-VILLIP  383 (408)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~-~~~~~~  383 (408)
                      ....+..+..+++|.+.+|+||.+.|+++.+++..+++..+++.....+.+....+....+.+++..+.+... .++++.
T Consensus       404 ~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~  483 (513)
T KOG0254|consen  404 FIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFV  483 (513)
T ss_pred             HHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEc
Confidence            2233445667899999999999999999999999999998877776666555443224567777777777777 789999


Q ss_pred             cccCCcccccccccc
Q 015377          384 FETKGKELVNTIDGV  398 (408)
Q Consensus       384 ~et~~~~~~~~~~~~  398 (408)
                      |||||++++|+.+.-
T Consensus       484 pETkg~sleei~~~~  498 (513)
T KOG0254|consen  484 PETKGLTLEEINELF  498 (513)
T ss_pred             ccCCCCcHHHHHHHH
Confidence            999999999988743

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=286.54  Aligned_cols=361  Identities=32%  Similarity=0.460  Sum_probs=270.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      +.|||++++.+.++..++++++++++|++.+++.|+++|++.++. .+...+++|+.++++|+.+.++....+..|.+..
T Consensus       144 ~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~  223 (521)
T KOG0255|consen  144 RFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLP  223 (521)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHH
Confidence            369999999999999999999999999999999999999998876 4667788999999999999999666666666666


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCccc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  159 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (408)
                      +..+++.   .+|||.+++..+|+++.++.++..||||||+..+||.++|.+.++++++.|+.+....+.       .+.
T Consensus       224 ~~~a~~~---~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~-------~~~  293 (521)
T KOG0255|consen  224 AGAAYIT---RDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKEL-------LRL  293 (521)
T ss_pred             HHHHHHH---hhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHH-------HHH
Confidence            5566655   399999999999998887777777799999999999999999999999877433211100       000


Q ss_pred             ccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015377          160 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  238 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (408)
                      ..   ..+     ..+.  ...++...+.+++ .++.++.++.+++.++...+.||+..+....+               
T Consensus       294 ~~---~~~-----~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~l---------------  348 (521)
T KOG0255|consen  294 EL---LLR-----PLKL--LFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGL---------------  348 (521)
T ss_pred             HH---Hhh-----Hhhh--hccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhc---------------
Confidence            00   000     0000  0000111234444 45688888888888888888999887655432               


Q ss_pred             CccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh-hH--HHHHHHHHHHHHhhhhhh
Q 015377          239 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-NI--LLTALLSGARMFSMGTFI  315 (408)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~  315 (408)
                         ..+.+.+..+.+....++....+...|+.|||.....+.....+.++....... ..  .......++.++....+.
T Consensus       349 ---g~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (521)
T KOG0255|consen  349 ---GGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFN  425 (521)
T ss_pred             ---CchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence               245677777777789999999999999999999998887777766555444221 11  233344444555555566


Q ss_pred             hhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccccccc
Q 015377          316 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNTI  395 (408)
Q Consensus       316 ~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~~  395 (408)
                      ..+.+++|++|+.+|+++.+.++.+++++++++|.+...... ......+.+++....+.+++..++.|||++++++|+.
T Consensus       426 ~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~  504 (521)
T KOG0255|consen  426 LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTL  504 (521)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhH
Confidence            779999999999999999999999999999999987643322 3333444456888888888887888999999999988


Q ss_pred             ccccc
Q 015377          396 DGVSN  400 (408)
Q Consensus       396 ~~~~~  400 (408)
                      ++.++
T Consensus       505 ~~~~~  509 (521)
T KOG0255|consen  505 LDAEN  509 (521)
T ss_pred             HHHHh
Confidence            88774

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=4e-42  Score=334.48  Aligned_cols=360  Identities=29%  Similarity=0.502  Sum_probs=252.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSP---NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      +.|||++++++.++..+++++.++++   |+..+.++|++.|++.|... +...|+.|.+|+++||+..++.+.++.+|.
T Consensus        72 ~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~  151 (451)
T PF00083_consen   72 RYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGI  151 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            57999999999999999999999999   99999999999999999874 566789999999999999999999999999


Q ss_pred             HHHHHHHhHhccc---cchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377           77 VSEAALAWIVMPI---LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  153 (408)
Q Consensus        77 ~l~~~l~~~~~~~---~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  153 (408)
                      +++..+++...+.   ++||+.+.+..+|+++..+..+++||||+||.+|||.|||++.++++++.+..+          
T Consensus       152 ~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~----------  221 (451)
T PF00083_consen  152 LLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED----------  221 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccccccc----------
Confidence            9998887765433   459999999999998887888899999999999999999999998854331111          


Q ss_pred             CCCcccccCCCCCccccccccccccccccccchhhhccch-hhHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCCCC
Q 015377          154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSP-RFFKTTILLWVLYFGNSF-VYYGIVLLASELSGSQSKCS  231 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~  231 (408)
                       ++.+++.++.++.+          ..+   ...++++++ +++++..........+.. .++....+.+.+....+   
T Consensus       222 -~~~~~~~~~~~~~~----------~~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~---  284 (451)
T PF00083_consen  222 -EEIEEIKAEKKESQ----------ESK---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAG---  284 (451)
T ss_pred             -cccccccccccccc----------ccc---eeeeeccccccccccccccccccccccccccccccccccccccccc---
Confidence             01111111000000          000   122334433 233444333323222222 22222223333321110   


Q ss_pred             cccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---h--hhh----hHHHHHH
Q 015377          232 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---T--LQS----NILLTAL  302 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~--~~~----~~~~~~~  302 (408)
                              .. .+ +....+..+..+++.+++.+++||+|||+.++.+...++++...+.   .  ..+    .......
T Consensus       285 --------~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  354 (451)
T PF00083_consen  285 --------IS-NS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVF  354 (451)
T ss_pred             --------cc-cc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence                    00 01 2233344566677888888999999999998887766655444332   1  111    1111111


Q ss_pred             HHHH-HHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHh
Q 015377          303 LSGA-RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  381 (408)
Q Consensus       303 ~~~~-~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  381 (408)
                      .... ..+..+..+..+.+++|+||++.|+++.|+++.++++++++.|.+.+.+.+..+....+.+++++++++.++.++
T Consensus       355 ~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~  434 (451)
T PF00083_consen  355 LALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYF  434 (451)
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeE
Confidence            1111 222335567888999999999999999999999999999999988887766555456788888888999999999


Q ss_pred             cccccCCccccccccc
Q 015377          382 IPFETKGKELVNTIDG  397 (408)
Q Consensus       382 ~~~et~~~~~~~~~~~  397 (408)
                      +.|||||++++|++++
T Consensus       435 ~lpET~g~~l~ei~~~  450 (451)
T PF00083_consen  435 FLPETKGKTLEEIQEM  450 (451)
T ss_pred             EEeeCCCCCHHHHHhh
Confidence            9999999999998764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=4.7e-32  Score=265.88  Aligned_cols=336  Identities=15%  Similarity=0.172  Sum_probs=216.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHH--------HHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYIS--------LLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF   71 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~--------l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~   71 (408)
                      |.|||+++.++.++++++++++++++|+.+        ++++|+++|++.|+.. +...+++|++|+++||+..++.+.+
T Consensus        83 r~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~  162 (490)
T PRK10642         83 KYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFG  162 (490)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            579999999999999999999999999975        8999999999999874 5677899999999999999999988


Q ss_pred             HHHHHHHHHHHHhHhc--------cccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCC
Q 015377           72 WTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTS  143 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~  143 (408)
                      ..+|.++++.+...+.        +.++||++|++.+++.++.++.+..+||||+|+..+++.++..          + +
T Consensus       163 ~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------~-~  231 (490)
T PRK10642        163 SIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------R-E  231 (490)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------c-c
Confidence            8888888876654331        3679999999988777766666778999999864332211100          0 0


Q ss_pred             CCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015377          144 LPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL  223 (408)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  223 (408)
                                  ..+    + +              .+   ..+++++++ +++.+...+...+.....+|+...|.|.+
T Consensus       232 ------------~~~----~-~--------------~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  276 (490)
T PRK10642        232 ------------GLQ----D-G--------------PK---VSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSY  276 (490)
T ss_pred             ------------ccc----c-c--------------cc---CCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        000    0 0              00   011222222 33444444444444556677777666654


Q ss_pred             hccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-HHh--hhhhHHHH
Q 015377          224 SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-LVT--LQSNILLT  300 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~-~~~--~~~~~~~~  300 (408)
                      .....          +..............++.+++.++.++++||+|||+.+..+.+...+.... +..  ..+.....
T Consensus       277 l~~~~----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (490)
T PRK10642        277 LSHNL----------HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIF  346 (490)
T ss_pred             HHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            32110          011111122233345667788889999999999999887665433322211 111  11111111


Q ss_pred             HHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHH
Q 015377          301 ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVI  379 (408)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~  379 (408)
                      .......++..+.......+.+|++|++.|+++.|+.++++++++.++|.+.+++.+..+ ...+..+..+.++++.+..
T Consensus       347 ~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~  426 (490)
T PRK10642        347 AGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG  426 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            111111122222334556677899999999999999999999989999999887776543 2344455556666666655


Q ss_pred             HhcccccCCccccc
Q 015377          380 LLIPFETKGKELVN  393 (408)
Q Consensus       380 ~~~~~et~~~~~~~  393 (408)
                      +++ |||+++.+++
T Consensus       427 ~~~-pes~~~~~~~  439 (490)
T PRK10642        427 VTM-KETANRPLKG  439 (490)
T ss_pred             HHh-ccccCCCCCC
Confidence            554 7998876653

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=5.4e-32  Score=265.38  Aligned_cols=357  Identities=22%  Similarity=0.274  Sum_probs=231.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFS------------PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV   67 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~   67 (408)
                      |.|||++++++.+++.+++++++++            +++..++++|+++|++.|.. +....+++|++|+++||+.+++
T Consensus        81 r~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~  160 (479)
T PRK10077         81 RFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSF  160 (479)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHH
Confidence            5799999999999999888887763            33678899999999999986 4567789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhc--------cccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHH
Q 015377           68 FSTFWTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQF  139 (408)
Q Consensus        68 ~~~~~~~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~  139 (408)
                      .+.+..+|.++++.++..+.        +..+||+.|++.+++.++..+..+++||||+|+..+++.+++++.+++..+.
T Consensus       161 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~  240 (479)
T PRK10077        161 NQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN  240 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCC
Confidence            99999999999887765442        3568999999998888777777788999999999999988888777665321


Q ss_pred             cCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHH--HHHHHHHHHHHHHHH
Q 015377          140 NQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILL--WVLYFGNSFVYYGIV  217 (408)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  217 (408)
                      +..               ++..++     ..+..+++    +.   .....+.  ........  ....+.+...++...
T Consensus       241 ~~~---------------~~~~~~-----~~~~~~~~----~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  291 (479)
T PRK10077        241 TLA---------------TQALQE-----IKHSLDHG----RK---TGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVL  291 (479)
T ss_pred             hhH---------------HHHHHH-----HHHHHHHh----hh---hhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHH
Confidence            100               000000     00000000    00   0000010  00011111  111112222233333


Q ss_pred             HHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--hh
Q 015377          218 LLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--QS  295 (408)
Q Consensus       218 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~--~~  295 (408)
                      .+.|.+....+           ..............+..+++.+++++++||+|||+.++.+.+...+....+...  .+
T Consensus       292 ~~~p~i~~~~g-----------~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~  360 (479)
T PRK10077        292 YYAPEIFKTLG-----------ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ  360 (479)
T ss_pred             HHHHHHHHHcC-----------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC
Confidence            34444332111           111111233334556778899999999999999999988776655544333221  11


Q ss_pred             -hH-HHH-HHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHh------hhcchhhHHH
Q 015377          296 -NI-LLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV------TSCHQTAAIL  366 (408)
Q Consensus       296 -~~-~~~-~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~------~~~~~~~~~~  366 (408)
                       .. ... ........+.....+..+.+.+|++|++.|+++.|++++++++++++++.+.+.+.      +..+....+.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~  440 (479)
T PRK10077        361 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYW  440 (479)
T ss_pred             cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHH
Confidence             11 111 11111111212223567889999999999999999999999999999887776443      2334456677


Q ss_pred             HHHHHHHHHHHHHHhcccccCCccccccccc
Q 015377          367 LLEALIVLSVVVILLIPFETKGKELVNTIDG  397 (408)
Q Consensus       367 ~~~~~~~i~~~~~~~~~~et~~~~~~~~~~~  397 (408)
                      ++++.++++.++.+++.||||+++++|..+.
T Consensus       441 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  471 (479)
T PRK10077        441 IYGCMGVLAALFMWKFVPETKGKTLEEMEAL  471 (479)
T ss_pred             HHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence            8888888888888888999999999887554

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.3e-34  Score=261.55  Aligned_cols=368  Identities=22%  Similarity=0.307  Sum_probs=254.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPN-------YISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFW   72 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~   72 (408)
                      +.|||+++...+++..++++++++...       ..++...|++.|+|+|+.+ ...+.++|.+-+++||...+......
T Consensus       110 ~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Q  189 (538)
T KOG0252|consen  110 KFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQ  189 (538)
T ss_pred             hhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEec
Confidence            479999999999999999998887532       4679999999999999985 55667899999999999998777777


Q ss_pred             HHHHHHHHHHHhHhc-------cc--------cchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcC-ChhhHHHHHHHH
Q 015377           73 TFGSVSEAALAWIVM-------PI--------LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKG-RITDAHNILDKI  136 (408)
Q Consensus        73 ~~G~~l~~~l~~~~~-------~~--------~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~-~~~~a~~~l~~~  136 (408)
                      ..|.+.+..++.++.       +.        .-||..+.+..+|+++.++.++.+|||++|..... |.++|.+   +.
T Consensus       190 g~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~---d~  266 (538)
T KOG0252|consen  190 GFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAG---DM  266 (538)
T ss_pred             chhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhh---cc
Confidence            777777666655531       11        13999999999999999999999999999984332 3233321   11


Q ss_pred             HHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 015377          137 AQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGI  216 (408)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (408)
                          .++.+.         +++++.+..+          .....++....+...+...+-++.+.....||...+.+|+.
T Consensus       267 ----~k~~~~---------~~~~~~~~~~----------~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~  323 (538)
T KOG0252|consen  267 ----KKVLSV---------DIEAESTAES----------DVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQ  323 (538)
T ss_pred             ----cccccc---------ccchhhcccc----------CCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence                111000         0111000000          00011111111222222234455555666777888999999


Q ss_pred             HHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh
Q 015377          217 VLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN  296 (408)
Q Consensus       217 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~  296 (408)
                      .++...+.+..+..+.....  ...-...-.+.++..+..+||.+++..++|++||+...+.++++.+++.+.+....++
T Consensus       324 nL~~s~I~~~ig~~~~~~~~--~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~  401 (538)
T KOG0252|consen  324 NLFQSVIFSAIGVIPSANTY--HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ  401 (538)
T ss_pred             ccHHHHHHHhhccCCCcchH--HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc
Confidence            99888776533322211100  0000011234455567778899999999999999999999998888877766554331


Q ss_pred             -----HHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhh-----hcchhhHHH
Q 015377          297 -----ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT-----SCHQTAAIL  366 (408)
Q Consensus       297 -----~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~-----~~~~~~~~~  366 (408)
                           ...+...+..++...|++....++.+|.||+++|++..|++.++|++|++++.+.+.++.+     ..+....+.
T Consensus       402 ~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~  481 (538)
T KOG0252|consen  402 LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFI  481 (538)
T ss_pred             ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHH
Confidence                 1122233344455678888899999999999999999999999999999999988888877     455556788


Q ss_pred             HHHHHHHHHHHHHHhcccccCCccccccccc
Q 015377          367 LLEALIVLSVVVILLIPFETKGKELVNTIDG  397 (408)
Q Consensus       367 ~~~~~~~i~~~~~~~~~~et~~~~~~~~~~~  397 (408)
                      +++.+++++.+..+++ ||||+|+++|+.++
T Consensus       482 i~~~~~~~gi~~T~l~-pEtk~~~leei~~e  511 (538)
T KOG0252|consen  482 ILAGCMLLGILFTLLI-PETKGKSLEEISNE  511 (538)
T ss_pred             HHHHHHHHhHheeEEe-ecccccCHHHhcCh
Confidence            8888888887766666 59999999997554

>PRK09952 shikimate transporter; Provisional

Probab=99.97  E-value=5.7e-29  Score=240.66  Aligned_cols=323  Identities=18%  Similarity=0.193  Sum_probs=206.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF   71 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~   71 (408)
                      |.|||+++..+.++++++++++++++|+.        .++++|+++|++.|... ....++.|+.|+++||+..+..+.+
T Consensus        90 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g  169 (438)
T PRK09952         90 RLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVG  169 (438)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence            57999999999999999999999999987        59999999999999874 5567889999999999999999999


Q ss_pred             HHHHHHHHHHHHhHhc--------cccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCC
Q 015377           72 WTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTS  143 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~  143 (408)
                      +.+|.+++..+...+.        ..++||++|++.+++.++....+...||||+|..++++.+++              
T Consensus       170 ~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~--------------  235 (438)
T PRK09952        170 YGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAA--------------  235 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhcccc--------------
Confidence            9999988876655432        257999999999988776666677789999875322111000              


Q ss_pred             CCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015377          144 LPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL  223 (408)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  223 (408)
                                    ++      +.+                 ..+.++  ++++.........+.....+|....|.+..
T Consensus       236 --------------~~------~~~-----------------~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y  276 (438)
T PRK09952        236 --------------KK------RIP-----------------VIEALL--RHPGAFLKIIALRLCELLTMYIVTAFALNY  276 (438)
T ss_pred             --------------cc------cCC-----------------HHHHHH--HchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          00      000                 000011  111112222223333444555555444433


Q ss_pred             hccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hhhhHHHH
Q 015377          224 SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQSNILLT  300 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~---~~~~~~~~  300 (408)
                      ....          .+.+.........+..+..+++..+.++++||+|||+.+..+.++..+.......   ..+.....
T Consensus       277 ~~~~----------~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (438)
T PRK09952        277 STQN----------LGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIV  346 (438)
T ss_pred             HHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            2110          0011111111222334556778889999999999999887665544333222211   11112111


Q ss_pred             H-HHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhh-HhHhhHHHHHHHHhhhc-c-hhhHHHHHHHHHHHHH
Q 015377          301 A-LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSC-H-QTAAILLLEALIVLSV  376 (408)
Q Consensus       301 ~-~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~-~~~~~~p~~~~~l~~~~-~-~~~~~~~~~~~~~i~~  376 (408)
                      . ......+......+..+.+.+|.+|++.|+++.|+.+.++. +++.++|.+.+.+.+.. + ...++.+.+++.+++.
T Consensus       347 ~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~  426 (438)
T PRK09952        347 FFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISA  426 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            1 11221222223345678889999999999999999998876 78999999998887743 2 2345555666666666


Q ss_pred             HHHHhcccccC
Q 015377          377 VVILLIPFETK  387 (408)
Q Consensus       377 ~~~~~~~~et~  387 (408)
                      +..+.. +||+
T Consensus       427 v~~~~~-~~~~  436 (438)
T PRK09952        427 MTALLM-KDNQ  436 (438)
T ss_pred             HHHHHc-cccc
Confidence            665554 5644

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.97  E-value=1.3e-29  Score=247.82  Aligned_cols=366  Identities=21%  Similarity=0.302  Sum_probs=233.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFS---PNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      |.|||++++++.+++.++.+++++.   .+++.++++|++.|++.|... ....++.|++|+++|++.++.++.+..+|.
T Consensus        97 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  176 (481)
T TIGR00879        97 RFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGI  176 (481)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHH
Confidence            5799999999999999999888554   345589999999999998764 456788999999999999999999999999


Q ss_pred             HHHHHHH---hHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377           77 VSEAALA---WIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  153 (408)
Q Consensus        77 ~l~~~l~---~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  153 (408)
                      .+++.++   ....+..+||+.|++.+++.++..+..+++||+|+++..+++.+++++..++..+.+..+          
T Consensus       177 ~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  246 (481)
T TIGR00879       177 LVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED----------  246 (481)
T ss_pred             HHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc----------
Confidence            9999988   444567799999999877777777777889999999988888777666554432211000          


Q ss_pred             CCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 015377          154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS  233 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  233 (408)
                       .+..+.....+..     ........+..+......+++..++........++.+...+.....+.+.+....+     
T Consensus       247 -~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----  315 (481)
T TIGR00879       247 -KELLDELELIDIK-----RSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAG-----  315 (481)
T ss_pred             -HHHHHHHHHHHHH-----HHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcC-----
Confidence             0000000000000     00000000001111111111111222222222222222222222333333321111     


Q ss_pred             cccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hh-hh------hHH-HHHH
Q 015377          234 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TL-QS------NIL-LTAL  302 (408)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~-~~------~~~-~~~~  302 (408)
                            ..............+..+++.+++++++||+|||+.+..+..+..+.+..+.   .. ..      ... ....
T Consensus       316 ------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (481)
T TIGR00879       316 ------VSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFI  389 (481)
T ss_pred             ------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHH
Confidence                  1111122334445567788999999999999999988776555544433332   11 11      111 1111


Q ss_pred             HHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 015377          303 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  382 (408)
                      ......+..+..+..+.+.+|.+|++.|+++.|+.+.+.+++++++|.+.+.+.+..+....+.++++++++++++.+++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       390 LLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHhee
Confidence            22222222333456677889999999999999999999999999999998887776666667788888888888888888


Q ss_pred             ccccCCccccc
Q 015377          383 PFETKGKELVN  393 (408)
Q Consensus       383 ~~et~~~~~~~  393 (408)
                      .||+|+++.+|
T Consensus       470 ~~~~~~~~~~~  480 (481)
T TIGR00879       470 LPETKGRTLEE  480 (481)
T ss_pred             cccCCCCChhh
Confidence            89999887654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=3.4e-28  Score=235.13  Aligned_cols=319  Identities=19%  Similarity=0.231  Sum_probs=200.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTF   71 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~   71 (408)
                      |.|||+++..+.+++.++++++++++++.        .++++|+++|++.|+. +....+++|+.|+++||+..++.+.+
T Consensus        89 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~  168 (432)
T PRK10406         89 KHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVT  168 (432)
T ss_pred             hcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHH
Confidence            68999999999999999999999999875        5999999999999986 45677899999999999999998888


Q ss_pred             HHHHHHHHHHHHhHhc--------cccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCC
Q 015377           72 WTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTS  143 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~  143 (408)
                      ...|.++++.+...+.        +.++||++|++.+++.++..+.+..+||+|++..++                 .. 
T Consensus       169 ~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~~-----------------~~-  230 (432)
T PRK10406        169 LIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRA-----------------LK-  230 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHhh-----------------hc-
Confidence            8888888776644432        257999999999998887777777789987642000                 00 


Q ss_pred             CCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015377          144 LPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL  223 (408)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  223 (408)
                                           +.                  .+++++++  +++.........+.....+|+...|.|..
T Consensus       231 ---------------------~~------------------~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~lp~~  269 (432)
T PRK10406        231 ---------------------EA------------------GSLKGLWR--NRRAFIMVLGFTAAGSLCFYTFTTYMQKY  269 (432)
T ss_pred             ---------------------cc------------------ccHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 00                  00111111  12222222233333455666666666654


Q ss_pred             hccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH--hh--hhhHHH
Q 015377          224 SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV--TL--QSNILL  299 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~--~~--~~~~~~  299 (408)
                      ....          .+.+.........+..+...++..+.++++||+|||+.+..+..+..+...+..  ..  .+....
T Consensus       270 l~~~----------~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (432)
T PRK10406        270 LVNT----------AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA  339 (432)
T ss_pred             HHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            3211          001111111222233344566777889999999999887665444333222211  11  111211


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhH-hHhhHHHHHHHHhhhcchhh-HHHHHHHHHHHHHH
Q 015377          300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTA-AILLLEALIVLSVV  377 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~-~~~~~p~~~~~l~~~~~~~~-~~~~~~~~~~i~~~  377 (408)
                      ..+.....+......+..+.+.+|.||++.|+++.|++++++++ .+...|.+... .+..+.+. .+++.+++.+++.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~  418 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFL  418 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHH
Confidence            11121111111122345677889999999999999999999886 34457777664 44444333 34444555566665


Q ss_pred             HHHhcccccCCccc
Q 015377          378 VILLIPFETKGKEL  391 (408)
Q Consensus       378 ~~~~~~~et~~~~~  391 (408)
                      ..+++  |+++|+.
T Consensus       419 ~~~~l--~~~~~~~  430 (432)
T PRK10406        419 VSLML--HRKGKGM  430 (432)
T ss_pred             HHHHh--hhccccc
Confidence            55553  6667654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.96  E-value=4.7e-27  Score=221.34  Aligned_cols=309  Identities=17%  Similarity=0.126  Sum_probs=199.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   80 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   80 (408)
                      |.|||+.++.+.+....+.+.....+|+..++++|+++|++.|........++|+.|+++|++++++.+.+..+|.++++
T Consensus        52 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~  131 (368)
T TIGR00903        52 RAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFAL  131 (368)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999887665554444433334447999999999999999886544555568999999999999999999999999999


Q ss_pred             HHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCccc
Q 015377           81 ALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  159 (408)
Q Consensus        81 ~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (408)
                      +++..+.+..+||+.|++.++++++. ++.++++||+|++.   ++..+.++                            
T Consensus       132 ~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~---~~~~~~~~----------------------------  180 (368)
T TIGR00903       132 AAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA---AEGFGFKD----------------------------  180 (368)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCcchHH----------------------------
Confidence            99988888899999999977766554 55677899998742   00000000                            


Q ss_pred             ccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015377          160 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  239 (408)
                               ..              +++++++++   +..+..+..++.....+|++..|.|.+..+.+           
T Consensus       181 ---------~~--------------~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g-----------  223 (368)
T TIGR00903       181 ---------AV--------------KEFGALAGR---KDLWIIGAILGFGVALFDNLAIWLEAALRPAG-----------  223 (368)
T ss_pred             ---------HH--------------HHHHHHHcC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
Confidence                     00              011122221   12233445566667777888888876653211           


Q ss_pred             ccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchH---HHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhh
Q 015377          240 VQDASVYINVFITSFAELPGLLTAALLVDRVGRK---LSMTI-MFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFI  315 (408)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (408)
                      .+ ..   ......+..+.|.+..++++||..||   +.... ......+.+..+....+............++..+.++
T Consensus       224 ~s-~~---~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  299 (368)
T TIGR00903       224 LE-DI---AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYA  299 (368)
T ss_pred             CC-hH---HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHH
Confidence            00 01   11122333344555668888887543   33222 2222222222222222222222233333334445556


Q ss_pred             hhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 015377          316 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       316 ~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  383 (408)
                      ..+.+.+|.+|++.|+++.|+.++.++++++++|.+.+.+..  +....|.++++..+++.+...+++
T Consensus       300 ~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~~~  365 (368)
T TIGR00903       300 IIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALLLP  365 (368)
T ss_pred             HHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhCC
Confidence            678899999999999999999999999999999988876663  445667788888888877765443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.95  E-value=3.2e-25  Score=214.45  Aligned_cols=323  Identities=16%  Similarity=0.228  Sum_probs=193.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTF   71 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~   71 (408)
                      |.|||+.++.+.+++.++++++++++++.        .++++|+++|++.|... ....+++|++|+++||+.+++.+..
T Consensus        82 r~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~  161 (434)
T PRK15075         82 RVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSAS  161 (434)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHH
Confidence            57999999999999999999999999987        47999999999998764 4567899999999999999998888


Q ss_pred             HHHHHHHHHHHHhHh--------ccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCC
Q 015377           72 WTFGSVSEAALAWIV--------MPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTS  143 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~--------~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~  143 (408)
                      ..+|..+++.++..+        .+..+||++|++..++.++..+.....||++++...++                 + 
T Consensus       162 ~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~-----------------~-  223 (434)
T PRK15075        162 QQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH-----------------R-  223 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh-----------------c-
Confidence            888877777666554        24679999999876554333333444555443210000                 0 


Q ss_pred             CCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015377          144 LPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL  223 (408)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  223 (408)
                                          .+.              ++   .++..  .+.++.........+.+...++....|.|.+
T Consensus       224 --------------------~~~--------------~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  264 (434)
T PRK15075        224 --------------------PSM--------------RE---IFRSL--AANWRIVLAGMLMVAMTTVSFYLITVYTPTF  264 (434)
T ss_pred             --------------------ccc--------------cc---HHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                000              00   00000  1112222222223333444555666666654


Q ss_pred             hccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-HH-h-hhhhH-HH
Q 015377          224 SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-LV-T-LQSNI-LL  299 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~-~~-~-~~~~~-~~  299 (408)
                      ..+.-          +.+............+.++++.+++++++||+|||+.+..+.......... .. . ..... ..
T Consensus       265 l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (434)
T PRK15075        265 GKTVL----------HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARM  334 (434)
T ss_pred             HHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            32110          011111223334455677889999999999999999877654433222111 11 1 11111 11


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhH-hHhhHHHHHHHHhhhcchh---hHHHHHHHHHHHH
Q 015377          300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQT---AAILLLEALIVLS  375 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~-~~~~~p~~~~~l~~~~~~~---~~~~~~~~~~~i~  375 (408)
                      ........++.....+..+.+.+|.+|++.|+++.|+.++++.. ++.++|.+.+.+.+..+..   ..+++++.+   +
T Consensus       335 ~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~---~  411 (434)
T PRK15075        335 LAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAV---C  411 (434)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHH---H
Confidence            11111111222222344567789999999999999999888876 5888999988887765532   112233222   2


Q ss_pred             HHHHHhcccccCCccccc
Q 015377          376 VVVILLIPFETKGKELVN  393 (408)
Q Consensus       376 ~~~~~~~~~et~~~~~~~  393 (408)
                      ..+..+...+.++..++.
T Consensus       412 ~~~~~~~~~~~~~~~~~~  429 (434)
T PRK15075        412 GLIATLVLYRRRGARLQA  429 (434)
T ss_pred             HHHHHHHhccccchhhhh
Confidence            223333444666665554

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.95  E-value=2.3e-25  Score=215.13  Aligned_cols=330  Identities=19%  Similarity=0.221  Sum_probs=203.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+++.++.++..++.++.++++++..++++|++.|++.|.. +....++.|+.|+++|++..++.+.+..+|.+++
T Consensus        79 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~  158 (426)
T PRK12307         79 KFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIA  158 (426)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHH
Confidence            579999999999999999999999999999999999999998875 4556678999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCccc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  159 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (408)
                      +.+...+.+..+||+.|++..++.++........||++++...+.+                .+  .           ++
T Consensus       159 ~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~----------------~~--~-----------~~  209 (426)
T PRK12307        159 AYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS----------------GK--G-----------KH  209 (426)
T ss_pred             HHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh----------------cc--c-----------cc
Confidence            8887777778899999998776665555555567887765311000                00  0           00


Q ss_pred             ccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015377          160 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  239 (408)
                        ++...    .       .   .....+..++++..+.........+......+....+.|......+           
T Consensus       210 --~~~~~----~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------  262 (426)
T PRK12307        210 --SQSAW----S-------V---FSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEG-----------  262 (426)
T ss_pred             --cccch----h-------h---hhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence              00000    0       0   0001222333332222222222222111122222223332221110           


Q ss_pred             ccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-hhHHHH-HHHHHHHHHhhhhhhhh
Q 015377          240 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SNILLT-ALLSGARMFSMGTFIIA  317 (408)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~  317 (408)
                      .+............++.+++.++.+++.||+|||+.+..+..+..+....+.... +..... ...+...+...+..+..
T Consensus       263 ~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (426)
T PRK12307        263 FDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLV  342 (426)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHH
Confidence            1111112223344567888999999999999999988777665544433332211 111111 11211112222333455


Q ss_pred             hhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhh-HHHHHHHHHHHHHHHHHhccccc
Q 015377          318 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA-AILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       318 ~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      +.+..|.+|++.|+++.|+.+.++++++.++|.+.+.+.+..+... .+++.++.+..+.....+..||+
T Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (426)
T PRK12307        343 PKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR  412 (426)
T ss_pred             HHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence            6777899999999999999999999999999999988877665322 23333333444444433444554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.95  E-value=8.5e-25  Score=209.89  Aligned_cols=318  Identities=23%  Similarity=0.311  Sum_probs=206.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+++..+.++..++.++.++++++..+++.|++.|++.|.. +....++.|++|+++|++.+++.+.+..+|..++
T Consensus        76 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  155 (406)
T PRK11551         76 RIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALA  155 (406)
T ss_pred             HhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999998875 3556688999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      +.++..+.+..+||+.|++.++..++. .....++||+|++...+++.++.++                           
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------  208 (406)
T PRK11551        156 SVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP---------------------------  208 (406)
T ss_pred             HHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh---------------------------
Confidence            988877777789999999887655544 3455678998875321110000000                           


Q ss_pred             cccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (408)
                                .                 ....++++..+.....+...+.....++....|.|.+..+.+          
T Consensus       209 ----------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g----------  251 (406)
T PRK11551        209 ----------V-----------------LRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQG----------  251 (406)
T ss_pred             ----------h-----------------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------
Confidence                      0                 000000111111122233333333344444445554432211          


Q ss_pred             CccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 015377          239 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIAN  318 (408)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                       .+............+..+++.++.+++.||+|||+.+..+.....+.+..+....+............++..+..+..+
T Consensus       252 -~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  330 (406)
T PRK11551        252 -LSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLY  330 (406)
T ss_pred             -CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHH
Confidence             1111112233344567789999999999999999988765444444333333222222222222222223334456677


Q ss_pred             hhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhh-HHHHHHHHHHHHHHHHHhcc
Q 015377          319 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA-AILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       319 ~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~~  383 (408)
                      .+.+|.+|++.|+++.|+.+.++.+++.++|.+.+.+.+..+... .+.....+.+++.+..++..
T Consensus       331 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        331 ALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV  396 (406)
T ss_pred             HHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            888999999999999999999999999999999998877544332 33344444445545544443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.95  E-value=4e-25  Score=212.15  Aligned_cols=317  Identities=17%  Similarity=0.235  Sum_probs=195.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+.++.+++.++++++++++|++.+++.|+++|++.|... ....++.|++|+++||+.+++++.+..+|.+++
T Consensus        69 r~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~  148 (412)
T TIGR02332        69 IIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALG  148 (412)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999998763 445678999999999999999999999999999


Q ss_pred             HHHHhHhcc------ccchHHHHHHhhHHHHHH-HHHHHhccCcch---hHhhcCChhhHHHHHHHHHHHcCCCCCCCCc
Q 015377           80 AALAWIVMP------ILTWRWLLALSAIPAFVL-LIFIVFMPESPR---YLCTKGRITDAHNILDKIAQFNQTSLPSGNL  149 (408)
Q Consensus        80 ~~l~~~~~~------~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~---~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~  149 (408)
                      +.++..+.+      ..+||+.|++.+++.++. .+.++++||+|+   |+.     +++++..++..+.+..+      
T Consensus       149 ~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~-----~~~~~~~~~~~~~~~~~------  217 (412)
T TIGR02332       149 LILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLD-----EEDKKALKEMIDNDQLT------  217 (412)
T ss_pred             HHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCC-----HHHHHHHHHHHHhcccc------
Confidence            998776542      469999999998887665 445677899995   322     12222111111111000      


Q ss_pred             cCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 015377          150 TSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSK  229 (408)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  229 (408)
                             .++..++.++.         +...+   ...+.+++++.+    .....++.....++++..|.|.+..+...
T Consensus       218 -------~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~l~~~~~  274 (412)
T TIGR02332       218 -------LEQPEGAFAHA---------AMPQR---SMLREIFTPAIM----LYTLAYFCLTNTLSAINIWTPQILQSFNQ  274 (412)
T ss_pred             -------ccccccccccc---------cccHH---HHHHHhcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                   00000000000         00000   012223333322    23333444455566666666655432100


Q ss_pred             CCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 015377          230 CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM-TIMFIFVCIFLLPLVTLQSNILLTALLSGARM  308 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                               ...............++.++|.++.++++||++||+.. ........+.+.......+............+
T Consensus       275 ---------~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (412)
T TIGR02332       275 ---------GSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASM  345 (412)
T ss_pred             ---------CCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence                     00111112233455677888999999999999977643 32222222222111112221211111111111


Q ss_pred             HhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 015377          309 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  360 (408)
Q Consensus       309 ~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~  360 (408)
                      ......+..+....|.+|++.|+++.|+.++.+++|++++|.+.+.+.+..+
T Consensus       346 g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g  397 (412)
T TIGR02332       346 GSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG  397 (412)
T ss_pred             HhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence            1112223455666789999999999999999999999999999887777654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.94  E-value=1.7e-24  Score=207.41  Aligned_cols=316  Identities=19%  Similarity=0.286  Sum_probs=197.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.++++.++..++.+++++++++..+++.|++.|++.+... ....++.|+.|+++|++..++.+.+..+|..++
T Consensus        73 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~  152 (405)
T TIGR00891        73 RYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVA  152 (405)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999988764 556788999999999999999999999999999


Q ss_pred             HHHHhHhccccc--hHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCc
Q 015377           80 AALAWIVMPILT--WRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  157 (408)
Q Consensus        80 ~~l~~~~~~~~~--Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  157 (408)
                      +.++..+.+..+  ||+.|++.+++.++..+....+||+|++...+++.++..+..++..+   .+           ...
T Consensus       153 ~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------~~~  218 (405)
T TIGR00891       153 AQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYG---GE-----------HRI  218 (405)
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc---cc-----------hhh
Confidence            998877766554  99999998887777666777889998765333222211111111100   00           000


Q ss_pred             ccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 015377          158 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  237 (408)
                      +.         ..+   +.    .   ...+. ..++.+.................++...+.|......          
T Consensus       219 ~~---------~~~---~~----~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  268 (405)
T TIGR00891       219 AN---------IVM---TL----A---AAMVQ-SAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD----------  268 (405)
T ss_pred             hh---------hhh---hh----h---HHhhh-hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH----------
Confidence            00         000   00    0   00000 0011111111112222222222222222222211100          


Q ss_pred             cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHhhhhhhh
Q 015377          238 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV-TLQSNILLTALLSGARMFSMGTFII  316 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  316 (408)
                      .+.+............++.+++.++.+++.||+|||+.+..+.....+...... ...+............++..+..+.
T Consensus       269 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (405)
T TIGR00891       269 LGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGI  348 (405)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhh
Confidence            001111222233445677889999999999999999988776655433222222 2222222111112222333344556


Q ss_pred             hhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 015377          317 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  360 (408)
Q Consensus       317 ~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~  360 (408)
                      ...+.+|.+|++.|+++.|+.+.++.+++.++|.+.+.+.+..+
T Consensus       349 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       349 LPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             HHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            67788999999999999999999999999999999998888765

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.94  E-value=3.2e-24  Score=207.44  Aligned_cols=338  Identities=16%  Similarity=0.168  Sum_probs=206.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+++.++.++..++.++.++++++..+++.|++.|++.|.. +....++.|++|+++||+.+++++.+..+|..++
T Consensus        84 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~  163 (434)
T PRK11663         84 RSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALI  163 (434)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999988865 4456688999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      +.+...+.+..+||+.|++.+++.++. ++..+++||+|++.......++                     .++      
T Consensus       164 ~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~---------------------~~~------  216 (434)
T PRK11663        164 PLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEW---------------------RHD------  216 (434)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccc---------------------ccc------
Confidence            998888878889999999988776554 4455678998864210000000                     000      


Q ss_pred             cccCCCCCccccccccccccccccccch-hh--hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSS-FL--MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  235 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  235 (408)
                      .+ +..++.       +++   +.+.+. ++  .+.+++    .+......+.....++++..|.|.+.....       
T Consensus       217 ~~-~~~~~~-------~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~-------  274 (434)
T PRK11663        217 AL-ELAQQQ-------EGA---GLSRKEILTKYVLLNPY----IWLLSFSYVLVYVVRAAINDWGNLYMSETL-------  274 (434)
T ss_pred             cc-ccchhc-------ccc---CCChhhhHHHHHhcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence            00 000000       000   000000 00  011111    112222223333344444445443331110       


Q ss_pred             cccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhh--chH-HHHHHHHHHHH--HHHHHHHhhhhhHHHHHHHHHHHHHh
Q 015377          236 LSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRK-LSMTIMFIFVC--IFLLPLVTLQSNILLTALLSGARMFS  310 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (408)
                         ..+............+++++|.++.++++||+  ++| ...........  ..........+........+...++.
T Consensus       275 ---g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  351 (434)
T PRK11663        275 ---GVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFV  351 (434)
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence               01111111222344567789999999999998  333 32222111111  11111111111111111122222222


Q ss_pred             hhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCcc
Q 015377          311 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  390 (408)
Q Consensus       311 ~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~  390 (408)
                      .++......+.+|.+|++.|+++.|+.++.+++|+.++|.+.+.+.+..+....+.+.+++.+++.+..++..++.++++
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  431 (434)
T PRK11663        352 FGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPRE  431 (434)
T ss_pred             hhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Confidence            23333445567899999999999999999999999999999998888777666777777887777777776666666654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.94  E-value=3.1e-25  Score=201.37  Aligned_cols=331  Identities=21%  Similarity=0.324  Sum_probs=224.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   80 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   80 (408)
                      -+.|..+-+++++..+.+++.++++++..+.+.-+++|.-.|.+ +.+...++-|+|++|||+..++++.++++|..+.+
T Consensus        91 ~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~  170 (448)
T COG2271          91 SNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAP  170 (448)
T ss_pred             CCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHH
Confidence            46678888999999999999999999999999999999988876 56677889999999999999999999999999999


Q ss_pred             HHH--hHhccccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCc
Q 015377           81 ALA--WIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  157 (408)
Q Consensus        81 ~l~--~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  157 (408)
                      ++.  ..+..+.+||..|++.++.+++. ++.++.+.|+|+=.   |-.        .+++..++             ..
T Consensus       171 ~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~---GLP--------~ie~~~~d-------------~~  226 (448)
T COG2271         171 LVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE---GLP--------PIEEYRGD-------------PL  226 (448)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---CCC--------CHHHhhcC-------------ch
Confidence            888  66677789999999999988776 55677889998721   111        01110000             00


Q ss_pred             ccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccCCCCCccc
Q 015377          158 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVY---YGIVLLASELSGSQSKCSSSI  234 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~  234 (408)
                      +.+ ++ +++.       +      +. +.++.+.+...++- .+|.+.+.+.+.|   |++..|.|....+.       
T Consensus       227 e~~-~~-~~~~-------~------~l-s~~~i~~~YVL~Nk-~iW~la~a~vfvYivR~gi~dW~p~YL~e~-------  282 (448)
T COG2271         227 EIY-EE-EKEN-------E------GL-TAWQIFVKYVLKNK-LIWLLALANVFVYVVRYGINDWGPLYLSEV-------  282 (448)
T ss_pred             hhh-hh-hccC-------C------Cc-cHHHHHHHHHHcCh-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-------
Confidence            000 00 0000       0      00 01111111111111 2455655665555   77888877554321       


Q ss_pred             ccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhh--chHHHHHHHHHHHH-HHHHHHHhhhh--hHHHHHHHHHHHHH
Q 015377          235 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTIMFIFVC-IFLLPLVTLQS--NILLTALLSGARMF  309 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~  309 (408)
                         .+.+..+......+.-+++++|+++.|+++||+  |||......+.+.. +++.......+  ......+++...++
T Consensus       283 ---k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~  359 (448)
T COG2271         283 ---KGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFL  359 (448)
T ss_pred             ---cCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence               111112223334455688999999999999997  88877755433333 33333332222  23444455555666


Q ss_pred             hhhhhhhhhhhcccccCCchhhHHHhHHHHhhhH-hHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 015377          310 SMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       310 ~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  383 (408)
                      ..|+.-+......|..|.+.-+++.|+...++++ |+..+....+.+.|..++...|+++.+.++++.+..+...
T Consensus       360 IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~  434 (448)
T COG2271         360 IYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW  434 (448)
T ss_pred             HhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence            6788778888999999999999999999999999 8888887777776776777778877777766665555443

>TIGR00895 2A0115 benzoate transport

Probab=99.94  E-value=6.1e-24  Score=202.91  Aligned_cols=318  Identities=28%  Similarity=0.378  Sum_probs=207.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+.++..++.++.++++++..+++.|++.|++.|.. +....++.|+.|+++|++..++.+.+..+|..++
T Consensus        78 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  157 (398)
T TIGR00895        78 RIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVG  157 (398)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHH
Confidence            469999999999999999999999999999999999999998875 4566788999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHH-HHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPA-FVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~-~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      +.+...+.+..+||+.+++.++.. +...+...++||+|++...+ +.+++.+..++....+..+.+         .+.+
T Consensus       158 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~  227 (398)
T TIGR00895       158 GFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ---------SALP  227 (398)
T ss_pred             HHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc---------cccc
Confidence            999888888889999999886544 44455667889999887655 445555555544332211100         0000


Q ss_pred             cccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (408)
                      +      ++.       +....+   ...+.+++++..+.....+...+.....++....+.|.+....+          
T Consensus       228 ~------~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----------  281 (398)
T TIGR00895       228 E------QKA-------TQGTKR---SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELG----------  281 (398)
T ss_pred             c------ccc-------ccchhh---HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------
Confidence            0      000       000000   01122333444444544555555555555555555554332111          


Q ss_pred             CccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 015377          239 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIAN  318 (408)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                       .+............+..+++.++.++++||+|||.......+.............+............++..+..+..+
T Consensus       282 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  360 (398)
T TIGR00895       282 -FSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLY  360 (398)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1111122333444577889999999999999999544433332222222222122222222222223333344556778


Q ss_pred             hhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHH
Q 015377          319 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  355 (408)
Q Consensus       319 ~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l  355 (408)
                      .+.+|.+|++.|+++.|+.+.++++|+.++|.+.+.+
T Consensus       361 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       361 ALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            8999999999999999999999999999999887643

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.93  E-value=5.8e-24  Score=202.59  Aligned_cols=332  Identities=16%  Similarity=0.204  Sum_probs=200.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+.++.++..++.++.++++|++.++++|++.|++.|.. +....++.|++|+++|++.+++.+....+|.+++
T Consensus        55 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  134 (399)
T TIGR00893        55 RFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIG  134 (399)
T ss_pred             hcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHH
Confidence            579999999999999999999999999999999999999998765 4556788999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      +.++..+.+..+||+.|++.++..++..+ ..+..||+|+..   ++.++.++....  +..+.               +
T Consensus       135 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~---------------~  194 (399)
T TIGR00893       135 GPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA---KWLTEEEKYIVV--GGLLA---------------E  194 (399)
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc---ccCCHHHHhhcc--hhhcc---------------c
Confidence            99988887888999999998887666544 445567776421   111111100000  00000               0


Q ss_pred             cccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS  237 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  237 (408)
                      .  ++.+++             +......+..+ +++.+    ......+.....++....+.|....+..         
T Consensus       195 ~--~~~~~~-------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  246 (399)
T TIGR00893       195 Q--QGKGPS-------------TPKKYQIKELLKDRRVW----GLALGQFLVNIGLGFFLTWFPTYLVQER---------  246 (399)
T ss_pred             c--cccccc-------------CCCccchHHHhcCHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHh---------
Confidence            0  000000             00001111222 22222    1222222222333333333332221100         


Q ss_pred             cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHH--HHHHH-HH-HHHH--HHHHHHhh-hhhHHHHHHHHHHHHHh
Q 015377          238 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL--SMTIM-FI-FVCI--FLLPLVTL-QSNILLTALLSGARMFS  310 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~--~~~~~-~~-~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~  310 (408)
                       +.+............+.++++.++.++++||++||+  ..... .. ...+  ........ .+.............+.
T Consensus       247 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (399)
T TIGR00893       247 -GLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFG  325 (399)
T ss_pred             -cccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence             011111122334445677889999999999999996  11111 11 1111  11111111 11111111111222222


Q ss_pred             hhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHHh
Q 015377          311 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILL  381 (408)
Q Consensus       311 ~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~  381 (408)
                      .+..+..+.+.+|.+|++.|+++.|+.+.+.++|+.++|.+.+.+.+..+ ....+.+.+++.+++.+..++
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       326 LGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             hhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            33467788899999999999999999999999999999999998887766 445566666666666555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.93  E-value=1.3e-23  Score=205.23  Aligned_cols=338  Identities=14%  Similarity=0.137  Sum_probs=199.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAF-----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTF   74 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~   74 (408)
                      |.|||+++.++.+++++..++.++     ++|+..+++.|++.|++.|.. +....++.|++|+++||+++++++.+..+
T Consensus        90 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~l  169 (467)
T PRK09556         90 GKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNL  169 (467)
T ss_pred             ccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccch
Confidence            679999999888888777765554     689999999999999988765 45567889999999999999999999999


Q ss_pred             HHHHHHHHHhHhccc---cchHHHHHHhhHHHHHHHH-HHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCcc
Q 015377           75 GSVSEAALAWIVMPI---LTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLT  150 (408)
Q Consensus        75 G~~l~~~l~~~~~~~---~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  150 (408)
                      |.++++++...+...   .+||..|.+.+++.++..+ .+++.+|+|+..   +..+ +++..      +  +       
T Consensus       170 G~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~-~~~~~------~--~-------  230 (467)
T PRK09556        170 GGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGK-AEEIF------G--E-------  230 (467)
T ss_pred             hhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCC-hhhcc------c--C-------
Confidence            999998877554432   2699999988877766543 445567777521   1101 00000      0  0       


Q ss_pred             CCCCCCcccccCCCCCccccccccccccccccccchhh-hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 015377          151 SDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFL-MLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSK  229 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  229 (408)
                           ..+++.+..+++        +. ..++.+  .+ .+.++..+    ......+.....+++...|.|....+.  
T Consensus       231 -----~~~~~~~~~~~~--------~~-~~~~~~--~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~p~yl~~~--  288 (467)
T PRK09556        231 -----PISEEDKETEST--------DM-TKWQIF--VEYVLKNPVIW----LLCFANIFLYIVRIGIDNWSPVYAFQE--  288 (467)
T ss_pred             -----ccchhhhccccc--------cC-cHHHHH--HHHHHcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence                 000000000000        00 000000  00 11122222    233333334444555555665432111  


Q ss_pred             CCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHH
Q 015377          230 CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFL--LPLVTLQSNILLTALLSGAR  307 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  307 (408)
                              .+.+............++.++|.+++|+++||+|||+..........+..  .......+........+...
T Consensus       289 --------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  360 (467)
T PRK09556        289 --------LGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALG  360 (467)
T ss_pred             --------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                    00111111223334456788999999999999999887655433222211  11111122222212222222


Q ss_pred             HHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhH-hHhhHHHHHHHHhh------------hcchhhHHHHHHHHHHH
Q 015377          308 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVT------------SCHQTAAILLLEALIVL  374 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~-~~~~~p~~~~~l~~------------~~~~~~~~~~~~~~~~i  374 (408)
                      ++..+.....+.+..|.+|.+.|+++.|+.+.++.+ |++++|.+.+.+.+            ..++...+.++.++.++
T Consensus       361 ~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~  440 (467)
T PRK09556        361 FLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIG  440 (467)
T ss_pred             HHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHH
Confidence            222233333345667999999999999999999997 77899999998888            34455666677777777


Q ss_pred             HHHHHHhcc-cccC
Q 015377          375 SVVVILLIP-FETK  387 (408)
Q Consensus       375 ~~~~~~~~~-~et~  387 (408)
                      +.+..+++. .|+|
T Consensus       441 ~~~~~~~~~~~~~~  454 (467)
T PRK09556        441 CICLMAIVAVMEER  454 (467)
T ss_pred             HHHHHHHHHHHHHH
Confidence            766655543 4544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.92  E-value=3.3e-23  Score=199.53  Aligned_cols=333  Identities=16%  Similarity=0.087  Sum_probs=211.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAF-----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTF   74 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~   74 (408)
                      |.|||+.+..+.++..++.+..+.     .++++.+++.|++.|++.|.. +....++.|+.|+++|++..++.+....+
T Consensus        78 r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (417)
T PRK10489         78 RYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRL  157 (417)
T ss_pred             hcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhH
Confidence            579999998888777766554432     567899999999999987654 34456778999999999999999999999


Q ss_pred             HHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCC
Q 015377           75 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGT  154 (408)
Q Consensus        75 G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  154 (408)
                      |..+++.++..+.+..+||+.+++.++..++..+..+.+||+|+..  +++ +                           
T Consensus       158 g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-~---------------------------  207 (417)
T PRK10489        158 GSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPR-E---------------------------  207 (417)
T ss_pred             HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccc-c---------------------------
Confidence            9999999988877778999999988877766666666777764310  000 0                           


Q ss_pred             CCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015377          155 NDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  234 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  234 (408)
                          +     +.+..           +   ..++..++++..+...+.....   . ...+...+.|....+.       
T Consensus       208 ----~-----~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~p~~~~~~-------  253 (417)
T PRK10489        208 ----H-----PLRSL-----------L---AGFRFLLASPVVGGIALLGGLL---T-MASAVRVLYPALADEV-------  253 (417)
T ss_pred             ----c-----chHHH-----------H---HHHHHHHcChHHHHHHHHHHHH---H-HHHhHHHhhHHHHHhc-------
Confidence                0     00000           0   0111112222222121111111   1 1122222333222110       


Q ss_pred             ccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 015377          235 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTF  314 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (408)
                         .+.+............++.++|.++.+++.||.++|+.+..+..+..+..+.+....+........+...+......
T Consensus       254 ---~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  330 (417)
T PRK10489        254 ---WQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISS  330 (417)
T ss_pred             ---cCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence               00111111122234456778889999999999777766666555444443333322222221111211112211222


Q ss_pred             hhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCcccccc
Q 015377          315 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVNT  394 (408)
Q Consensus       315 ~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~  394 (408)
                      +....+..|..|.+.|+++.|+.+....+|+.++|.+.+.+.+..+....+.+++++.++..++.....||+|+++.+|+
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (417)
T PRK10489        331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP  410 (417)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence            44567888999999999999999999999999999999988887776667777787777777777777789999999999


Q ss_pred             cccccc
Q 015377          395 IDGVSN  400 (408)
Q Consensus       395 ~~~~~~  400 (408)
                      .||.+.
T Consensus       411 ~~~~~~  416 (417)
T PRK10489        411 EVDASD  416 (417)
T ss_pred             cCCCCC
Confidence            998765

>PRK03545 putative arabinose transporter; Provisional

Probab=99.92  E-value=1.6e-22  Score=192.95  Aligned_cols=307  Identities=16%  Similarity=0.127  Sum_probs=194.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+.++..++++++++++|++.++++|+++|++.+.. +....++.|++|+++|++.+++.+.+..+|..++
T Consensus        70 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig  149 (390)
T PRK03545         70 NVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLG  149 (390)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999988765 3456788999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHH-HHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~-~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      ++++..+.+..+||+.|++.++..++.. +.+..+||.|+.     + ++..                            
T Consensus       150 ~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~-~~~~----------------------------  195 (390)
T PRK03545        150 LPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----H-SGSL----------------------------  195 (390)
T ss_pred             hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----C-cchH----------------------------
Confidence            9998888788899999999888766553 334456665420     0 0000                            


Q ss_pred             cccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCCCccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLL-ASELSGSQSKCSSSILL  236 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~  236 (408)
                                                +.....+ +++.+.....    .+.....+++...+ .+.+....         
T Consensus       196 --------------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~---------  236 (390)
T PRK03545        196 --------------------------KSLPLLFRRPALVSLYLL----TVVVVTAHFTAYSYIEPFVQQVA---------  236 (390)
T ss_pred             --------------------------HHHHHHHhCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhc---------
Confidence                                      0000111 1222221111    11111112221112 22221110         


Q ss_pred             ccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Q 015377          237 SENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFII  316 (408)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (408)
                        +.+............+.++++.++.++++||.+||.......+.............+............+...+....
T Consensus       237 --g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  314 (390)
T PRK03545        237 --GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLA  314 (390)
T ss_pred             --CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHH
Confidence              011111122233445678899999999999999887554333322222221122222222111222212222222233


Q ss_pred             hhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 015377          317 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       317 ~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  383 (408)
                      ......|..| +.|+++.|+.+....+|..++|.+.+.+.+..+....+...+.+.++++++.++..
T Consensus       315 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        315 MQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            3455567777 57899999999999999999999999888877766677777777777777766655

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.92  E-value=9.9e-23  Score=200.75  Aligned_cols=358  Identities=18%  Similarity=0.266  Sum_probs=203.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.++++.++..++.++.++++|+..++++|++.|++.+.. .....++.|..|+++|++..+....+..+|..++
T Consensus        81 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  160 (496)
T PRK03893         81 RYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVA  160 (496)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999999999999999999998865 4556778999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCccc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  159 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (408)
                      +.+...+.+..+||+.|++..++.++.++....+||++++...+++.++.++..+...+.++.             ....
T Consensus       161 ~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  227 (496)
T PRK03893        161 AQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHR-------------IINI  227 (496)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhH-------------HHHH
Confidence            999888888899999999877766665556677899877643322211111111100000000             0000


Q ss_pred             ccCCCCCccccccccccccccccccc-------------hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 015377          160 EFSTSEETPLLSSARKRTTVRKSGFS-------------SFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGS  226 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  226 (408)
                      ...... ....... ... ..+..+.             .+.....++.+..........+......++...+.|.+...
T Consensus       228 ~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~  304 (496)
T PRK03893        228 LLTLAA-AAALWFC-FAG-NLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKT  304 (496)
T ss_pred             HHHHHH-HHHHHHH-HHh-hhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            000000 0000000 000 0000000             00000000011111111111111111111122233332210


Q ss_pred             CCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-hhhH-HHHHHHH
Q 015377          227 QSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSNI-LLTALLS  304 (408)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~  304 (408)
                      .          .+..............++.++|.++.++++||+|||+.+..+..+..+..+..... .... ......+
T Consensus       305 ~----------~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (496)
T PRK03893        305 D----------LGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLF  374 (496)
T ss_pred             h----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            0          01111222333444567788899999999999999998877655544433322221 1111 1111122


Q ss_pred             HHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHH-HHHHHHHHhcc
Q 015377          305 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALI-VLSVVVILLIP  383 (408)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~-~i~~~~~~~~~  383 (408)
                      ...+...+..+....+.+|.+|.+.|+++.|+.++.+.+|+.++|.+.+.+.+..+....+...+.++ +.+.+...+..
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  454 (496)
T PRK03893        375 FQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDM  454 (496)
T ss_pred             HHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcC
Confidence            21122223344556678899999999999999999999999999999988877666544554444333 33333333433


Q ss_pred             c
Q 015377          384 F  384 (408)
Q Consensus       384 ~  384 (408)
                      |
T Consensus       455 ~  455 (496)
T PRK03893        455 P  455 (496)
T ss_pred             c
Confidence            3

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.92  E-value=5.1e-22  Score=189.57  Aligned_cols=315  Identities=16%  Similarity=0.094  Sum_probs=202.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+++..+.+++.++.+.+++++|+..++++|+++|++.|... ....++.|+.| ++|+++++.+..+...|..++
T Consensus        70 r~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g  148 (393)
T PRK09705         70 HVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLG  148 (393)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999998754 44556778887 889999999999999999999


Q ss_pred             HHHHhHhcccc-chHHHHHHhhHHHHHHHHHHHhccC-cchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCc
Q 015377           80 AALAWIVMPIL-TWRWLLALSAIPAFVLLIFIVFMPE-SPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  157 (408)
Q Consensus        80 ~~l~~~~~~~~-~Wr~~f~i~~i~~~~~~~~~~~lpE-Sp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  157 (408)
                      +.+...+.++. +||+.+.+.+++.++..+.++...+ .|+                            ++         
T Consensus       149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~---------  191 (393)
T PRK09705        149 AAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA----------------------------SS---------  191 (393)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------------------------cc---------
Confidence            88887766654 8999887766665443333322111 000                            00         


Q ss_pred             ccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 015377          158 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  237 (408)
                      ++     ++.        .         ....+.+++.+    .....++.....+++...|.|....+.+         
T Consensus       192 ~~-----~~~--------~---------~~~~l~~~~~~----~l~~~~~~~~~~~~~~~~~lp~~l~~~g---------  236 (393)
T PRK09705        192 HK-----TTT--------T---------PVRVVFTPRAW----TLGVYFGLINGGYASLIAWLPAFYIEIG---------  236 (393)
T ss_pred             cC-----CCc--------C---------CcccccCHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcC---------
Confidence            00     000        0         00011122222    1222222334455555555554432211         


Q ss_pred             cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhh
Q 015377          238 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFII  316 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  316 (408)
                        .+.........+..+.+++|.++.+++.||.+||+....+..+..+....+.. ..+..... . ....+...+.++.
T Consensus       237 --~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~-~l~g~g~g~~~~~  312 (393)
T PRK09705        237 --ASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW-A-MVCGLGLGGAFPL  312 (393)
T ss_pred             --CChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH-H-HHHHHhccchHHH
Confidence              11111122334556778899999999999999998887765554443332221 12111111 1 1111222233344


Q ss_pred             hhhhccccc-CCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcch-hhHHHHHHHHHHHHHHHHHhcccccCCcccc
Q 015377          317 ANIFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ-TAAILLLEALIVLSVVVILLIPFETKGKELV  392 (408)
Q Consensus       317 ~~~~~~el~-p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~  392 (408)
                      ......+.+ |++.|+++.|+.+.++.+++.++|.+.+.+.+..+. ...+.+..+++++..++.+.++|||++|...
T Consensus       313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK09705        313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLWV  390 (393)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchhc
Confidence            444555666 468899999999999999999999999988887653 3455666677777778878899999987544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.92  E-value=2.5e-22  Score=191.42  Aligned_cols=295  Identities=20%  Similarity=0.258  Sum_probs=184.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYI--------SLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTF   71 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~   71 (408)
                      |.|||+++..+.++..++.++.++++++.        .++++|+++|++.|.. +....++.|+.|+++|++..+..+.+
T Consensus        61 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  140 (394)
T TIGR00883        61 RIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVG  140 (394)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHH
Confidence            57999999999999999999999999876        4899999999998875 45567889999999999999999999


Q ss_pred             HHHHHHHHHHHHhHhc--------cccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCC
Q 015377           72 WTFGSVSEAALAWIVM--------PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTS  143 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~~--------~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~  143 (408)
                      ..+|.++++.+...+.        +..+||+.|++.++..++..+....+||+|++...+++                .+
T Consensus       141 ~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~  204 (394)
T TIGR00883       141 APVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK----------------HK  204 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc----------------cc
Confidence            9999999887765432        35689999998887766666666677887754211000                00


Q ss_pred             CCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015377          144 LPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL  223 (408)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  223 (408)
                                     +     ++.                  ..+..++++ ++.........+.....++....+.|.+
T Consensus       205 ---------------~-----~~~------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (394)
T TIGR00883       205 ---------------K-----KRG------------------PIRETLTKH-RKPFLLGLGLVIATTTTFYLITTYLPTY  245 (394)
T ss_pred             ---------------c-----ccC------------------CHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           0     000                  000111111 1112222223333333344333333333


Q ss_pred             hccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHH-HH-HHhh--hhhHHH
Q 015377          224 SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFL-LP-LVTL--QSNILL  299 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~-~~-~~~~--~~~~~~  299 (408)
                      ....          .+.+............+..+++.++.++++||+|||+.+..+.....+.. .. ....  .+....
T Consensus       246 ~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (394)
T TIGR00883       246 LTQT----------LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLF  315 (394)
T ss_pred             HHHh----------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            2110          00111122223334456678888999999999999997765433332222 11 1111  111222


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhh-HhHhhHHHHHHHHhhhcc
Q 015377          300 TALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSCH  360 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~-~~~~~~p~~~~~l~~~~~  360 (408)
                      ........+......+....+.+|.+|++.|+++.|+.+.++. +|+.++|.+.+.+.+..+
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       316 FFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            1222222222223446677888999999999999999776654 678899999988877665

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.91  E-value=7.8e-22  Score=191.82  Aligned_cols=338  Identities=17%  Similarity=0.220  Sum_probs=191.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSP----NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFG   75 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G   75 (408)
                      |.|||+.++.+.++++++.++.++++    ++..+++.|++.|++.|.. +.....+.|++|+++||+.+++++.+..+|
T Consensus        89 r~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  168 (452)
T PRK11273         89 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  168 (452)
T ss_pred             ccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhh
Confidence            67999999999999999888887753    7888999999999988765 334556789999999999999999999888


Q ss_pred             HHH-HHHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377           76 SVS-EAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  153 (408)
Q Consensus        76 ~~l-~~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  153 (408)
                      ..+ ++++........+||+.|++.+++.++. .+..+++||+|+...   ..++++.  +   +   +. +     +  
T Consensus       169 ~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~--~---~---~~-~-----~--  229 (452)
T PRK11273        169 GGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCG---LPPIEEY--K---N---DY-P-----D--  229 (452)
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcC---CCChhhh--h---h---cc-c-----c--
Confidence            644 4444333333459999999988776654 556677899887421   1111000  0   0   00 0     0  


Q ss_pred             CCCcccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 015377          154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  232 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  232 (408)
                        +.++  ++ +++        .  ..++.+  .+..+ ++..+    ......+.....+++...+.|....+..    
T Consensus       230 --~~~~--~~-~~~--------~--~~~~~~--~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~P~~l~~~~----  284 (452)
T PRK11273        230 --DYNE--KH-EQE--------L--TAKQIF--MQYVLPNKLLW----YIAIANVFVYLLRYGILDWSPTYLKEVK----  284 (452)
T ss_pred             --cccc--cc-CCC--------c--cHHHHH--HHHHHcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence              0000  00 000        0  000000  00111 11121    1222222223334555555554432110    


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhh--chHHHHHH-HHHHHHHHHHHHHh--hhhhHHHHHHHHHHH
Q 015377          233 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTI-MFIFVCIFLLPLVT--LQSNILLTALLSGAR  307 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  307 (408)
                            +...........+..+.++++.+++++++||+  +||..... ......+.......  ..+........+...
T Consensus       285 ------g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g  358 (452)
T PRK11273        285 ------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIG  358 (452)
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence                  01111112223344567788999999999999  55543322 11111111111111  111111111122222


Q ss_pred             HHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhh-HHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc-ccc
Q 015377          308 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMV-CPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI-PFE  385 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~e  385 (408)
                      ....+.......+..|.+|++.|+++.|+.+..+.+|+.+ +|.+.+.+.+..+....|.+++++++++.+....+ .+|
T Consensus       359 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  438 (452)
T PRK11273        359 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE  438 (452)
T ss_pred             HHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2222222333456779999999999999999999988765 68888888887776667777777777776665543 344


Q ss_pred             cCC
Q 015377          386 TKG  388 (408)
Q Consensus       386 t~~  388 (408)
                      +|+
T Consensus       439 ~~~  441 (452)
T PRK11273        439 KRH  441 (452)
T ss_pred             cch
Confidence            443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.91  E-value=2e-21  Score=186.04  Aligned_cols=313  Identities=14%  Similarity=0.045  Sum_probs=192.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhh--------hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFS--------PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTF   71 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~   71 (408)
                      |.|||++++.+.++..++++..+++        .++..+++.|+++|++.+.. +....++.|+.|+++|++.+++.+.+
T Consensus        77 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  156 (399)
T PRK05122         77 TLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIA  156 (399)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhh
Confidence            5799999999999888877665543        25778999999999998875 45566788999999999999999999


Q ss_pred             HHHHHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccC
Q 015377           72 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  151 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  151 (408)
                      ..+|.++++.++..+.+..+||+.+++..+..++..+.....||++.     .+                          
T Consensus       157 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--------------------------  205 (399)
T PRK05122        157 TYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP-----VK--------------------------  205 (399)
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC-----CC--------------------------
Confidence            99999999999888888889999988776655443333222232211     00                          


Q ss_pred             CCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 015377          152 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS  231 (408)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  231 (408)
                             +     ++.                  +.+..+ ++.++... ..   ....+.+.....+.+....+.+   
T Consensus       206 -------~-----~~~------------------~~~~~~-~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~---  247 (399)
T PRK05122        206 -------G-----ERL------------------PFRRVL-GRVWPYGM-GL---ALASIGFGTIATFITLYYAARG---  247 (399)
T ss_pred             -------c-----cch------------------hHHHHH-HHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHcc---
Confidence                   0     000                  000000 01111111 01   1111222222222221111110   


Q ss_pred             cccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 015377          232 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSM  311 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                              .....  .......+..+++.++.+++.||.|||+.+..+.....+....+....+............++..
T Consensus       248 --------~~~~~--~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~  317 (399)
T PRK05122        248 --------WDGAA--LALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFS  317 (399)
T ss_pred             --------cccch--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHH
Confidence                    00111  11223345667888999999999999998877655555444333333332222221222222222


Q ss_pred             hhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccc
Q 015377          312 GTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL  391 (408)
Q Consensus       312 ~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~  391 (408)
                      ..++.......|.+|.+.|+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+++++++.+...++. +.++++.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  396 (399)
T PRK05122        318 LVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLY-RRAPRAV  396 (399)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhc-ccccccC
Confidence            233444455678999999999999999999999888888888887766666677777777777776666654 5555555


Q ss_pred             cc
Q 015377          392 VN  393 (408)
Q Consensus       392 ~~  393 (408)
                      +|
T Consensus       397 ~~  398 (399)
T PRK05122        397 PE  398 (399)
T ss_pred             CC
Confidence            54

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.91  E-value=7.7e-22  Score=186.91  Aligned_cols=306  Identities=17%  Similarity=0.225  Sum_probs=189.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+++..+.++..++.+++++++|++.++++|++.|++.|... ....+..|+.| ++||+..+....+..+|..++
T Consensus        64 ~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~  142 (377)
T TIGR00890        64 KFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFIL  142 (377)
T ss_pred             HcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHH
Confidence            5799999999999999999999999999999999999999988653 44456678886 679999999999999998876


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHHH-HHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      +++...+.+..+||+.|++.++..++..+. .++++|+|+-.   .                +++           .+.+
T Consensus       143 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~-----------~~~~  192 (377)
T TIGR00890       143 SPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL---I----------------KTN-----------IEVS  192 (377)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc---c----------------ccC-----------cccc
Confidence            666555566779999999988877665444 44455543200   0                000           0000


Q ss_pred             cccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS  237 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  237 (408)
                            ++         +        ...++.+ +++.+.    .....+...+.......+.+....+.          
T Consensus       193 ------~~---------~--------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----------  235 (377)
T TIGR00890       193 ------VK---------D--------YTVWEMLRTPQFWV----LYLSFFLNAVSGLLLIGLYKPYGQSL----------  235 (377)
T ss_pred             ------hh---------h--------hhHHHHHcCccHHH----HHHHHHHHhHHHHHHHHHHHHHHHHc----------
Confidence                  00         0        0001111 122221    11111111111111111111111110          


Q ss_pred             cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhhhhhh
Q 015377          238 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS--NILLTALLSGARMFSMGTFI  315 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  315 (408)
                       ............+..+..+++.++.+++.||+|||+.+..+.....+....+....+  ............+......+
T Consensus       236 -~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  314 (377)
T TIGR00890       236 -GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS  314 (377)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence             011111222334455677889999999999999999887766655554443333221  11111111112222222334


Q ss_pred             hhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 015377          316 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS  375 (408)
Q Consensus       316 ~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~  375 (408)
                      ....+.+|.+|++.|+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+++++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            456678899999999999999999999999999999988877766656666666665554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.91  E-value=3.4e-21  Score=177.31  Aligned_cols=309  Identities=21%  Similarity=0.249  Sum_probs=200.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |..||+.++....++.++++++++++||+.++++|++.|++-|... +.....++..|+++|+++++....+.+++.+++
T Consensus        74 r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~G  153 (394)
T COG2814          74 RLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLG  153 (394)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999999999999874 556677899999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      .+++.++.+.+|||+.|++.+..+++. ...+..+|  |+-.                     .+.              
T Consensus       154 vPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~---------------------~~~--------------  196 (394)
T COG2814         154 VPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI---------------------SGS--------------  196 (394)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC---------------------CCC--------------
Confidence            999999999999999999998887775 45667788  3200                     000              


Q ss_pred             cccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (408)
                            .+.+.              .+..+.+.+|+.+.......+.+.++. ..|  .+..|.+.+..           
T Consensus       197 ------~~~~~--------------~~~~~~l~~p~v~~~l~~t~l~~~g~F-~~f--tYi~P~L~~v~-----------  242 (394)
T COG2814         197 ------LPGPL--------------RTLLRLLRRPGVLLGLLATFLFMTGHF-ALY--TYIRPFLESVA-----------  242 (394)
T ss_pred             ------CCcch--------------hHHHHHhcCchHHHHHHHHHHHHcchh-hhH--HhHHHHHHHcc-----------
Confidence                  00000              001222333444443333222222222 222  22234333211           


Q ss_pred             CccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhh
Q 015377          239 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFIIA  317 (408)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
                      ..+....-......++++++|.+++|++.|| +.|+.+........+.+..+.. ..+........+...+.........
T Consensus       243 g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~  321 (394)
T COG2814         243 GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGL  321 (394)
T ss_pred             CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHH
Confidence            1122334455566778899999999999999 7777766654444444433333 2333333222322222211122223


Q ss_pred             hhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 015377          318 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       318 ~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  382 (408)
                      ....++ .-++.+..+.++.....++|..++..+.+.+++..+......+-+...+++..+....
T Consensus       322 ~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~  385 (394)
T COG2814         322 QTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS  385 (394)
T ss_pred             HHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            344455 4457789999999999999988888888888887554444444445555555444443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.91  E-value=5e-22  Score=194.09  Aligned_cols=328  Identities=15%  Similarity=0.154  Sum_probs=195.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFS--PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   77 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   77 (408)
                      |.|||+++..+.++++++.+++.++  .++..+++.|+++|++.|.. +....++.|+.|+++||+.+++.+.+..+|.+
T Consensus       102 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  181 (465)
T TIGR00894       102 KYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTF  181 (465)
T ss_pred             HhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999988877544  56889999999999999886 45667899999999999999999999999999


Q ss_pred             HHHHHHhHhccc-cchHHHHHHhhHHHHHHHHH-HHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCC
Q 015377           78 SEAALAWIVMPI-LTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  155 (408)
Q Consensus        78 l~~~l~~~~~~~-~~Wr~~f~i~~i~~~~~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  155 (408)
                      +++++...+.+. .+||+.|++.++++++..+. +.+.||+|+..   .+.++.++  +.+.+...              
T Consensus       182 i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~--~~i~~~~~--------------  242 (465)
T TIGR00894       182 IFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH---PCISKFEK--KYINSSLQ--------------  242 (465)
T ss_pred             HHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC---CCCCHHHH--HHHHhhcc--------------
Confidence            999998887777 49999999999888776554 44567888621   11111111  11110000              


Q ss_pred             CcccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015377          156 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  234 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  234 (408)
                         ++.++  .            ..+   ..++..+ +++.    .......+.....++....|.|.......      
T Consensus       243 ---~~~~~--~------------~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~lp~~l~~~~------  292 (465)
T TIGR00894       243 ---GQKGS--T------------RQS---LPIKAIPKSLPV----WAIWFAIFGHFWLYTILPTYLPTFISWVL------  292 (465)
T ss_pred             ---cccCC--C------------CCC---CCHHHHhcCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence               00000  0            000   0112222 2222    22333444444555555555554432110      


Q ss_pred             ccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH--------HHHHHHH--HHHHHHHHh-hhhhHHHHHHH
Q 015377          235 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM--------TIMFIFV--CIFLLPLVT-LQSNILLTALL  303 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~--------~~~~~~~--~~~~~~~~~-~~~~~~~~~~~  303 (408)
                          +...........+..+..+++.+++|+++||+++|+..        ..+....  .+....... ..+.......+
T Consensus       293 ----g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (465)
T TIGR00894       293 ----RVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIIL  368 (465)
T ss_pred             ----CcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence                01111122233345677788999999999998654211        1111111  111111111 11122222222


Q ss_pred             HHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc--c-hhhHHHHHHHHHHHHHHHHH
Q 015377          304 SGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC--H-QTAAILLLEALIVLSVVVIL  380 (408)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~--~-~~~~~~~~~~~~~i~~~~~~  380 (408)
                      .....+..+.....+....|..|. .++++.|+.+..+.++++++|.+.+.+.+..  + ....+.+.++..+++.++..
T Consensus       369 ~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       369 TLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             HHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            222222222334445556677776 8999999999999999999999988766532  2 33456666666677665544


Q ss_pred             hc
Q 015377          381 LI  382 (408)
Q Consensus       381 ~~  382 (408)
                      ++
T Consensus       448 ~~  449 (465)
T TIGR00894       448 IF  449 (465)
T ss_pred             ee
Confidence            43

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.91  E-value=8.5e-22  Score=192.44  Aligned_cols=319  Identities=13%  Similarity=0.088  Sum_probs=182.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   80 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   80 (408)
                      |.|||+++..+.++++++.+++++++++..++++|++.|++.+.......+++|++|+++||+.+++.+....+|..+++
T Consensus        97 r~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~  176 (476)
T PLN00028         97 LYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQ  176 (476)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999998876444445788999999999999998776666666655


Q ss_pred             HHHhHh----cc-----ccchHHHHHHhhHHHHHHHHHHHhcc-CcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCcc
Q 015377           81 ALAWIV----MP-----ILTWRWLLALSAIPAFVLLIFIVFMP-ESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLT  150 (408)
Q Consensus        81 ~l~~~~----~~-----~~~Wr~~f~i~~i~~~~~~~~~~~lp-ESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  150 (408)
                      .+...+    .+     ..+||+.|++.+++.++..+..++++ |.|+     ++.++.+       +  +         
T Consensus       177 ~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~--~---------  233 (476)
T PLN00028        177 LLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------K--S---------  233 (476)
T ss_pred             HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------h--c---------
Confidence            444322    11     25899999999888776655444444 3332     1110000       0  0         


Q ss_pred             CCCCCCcccccCCCCCccccccccccccccccccchhhh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 015377          151 SDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLM-LFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSK  229 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  229 (408)
                                 .+.++..              ....++. +.+++    ++.++..++......++...+.|......  
T Consensus       234 -----------~~~~~~~--------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--  282 (476)
T PLN00028        234 -----------GTMPKDS--------------FSKVLRYGVTNYR----TWILALTYGYSFGVELTMDNIIAEYFYDR--  282 (476)
T ss_pred             -----------Ccccccc--------------HHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHhHHHHHHHHh--
Confidence                       0000000              0001111 11122    12222222222222333333333222110  


Q ss_pred             CCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHH-------HHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 015377          230 CSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL-------SMTIMFIFVCIFLLPLVTLQSNILLTAL  302 (408)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (408)
                              .+...........+..++.++|.+++|+++||++||.       .......+.++.+..+....+.......
T Consensus       283 --------~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~  354 (476)
T PLN00028        283 --------FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVV  354 (476)
T ss_pred             --------cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence                    0111122223344456778899999999999998762       2222222222222222222222222222


Q ss_pred             HHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 015377          303 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  382 (408)
                      +.+..++..+..+..+.+.+|+.| +.|+++.|+.+..+.+|++++|.+.. ..+..+....+++++++.+++.++.++.
T Consensus       355 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        355 MILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            222222222333456677788765 68999999999988899988887654 1122234456777777777777666655


Q ss_pred             c
Q 015377          383 P  383 (408)
Q Consensus       383 ~  383 (408)
                      +
T Consensus       433 ~  433 (476)
T PLN00028        433 H  433 (476)
T ss_pred             e
Confidence            4

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.90  E-value=3.8e-21  Score=186.31  Aligned_cols=338  Identities=16%  Similarity=0.201  Sum_probs=196.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFS----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFG   75 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G   75 (408)
                      |.|||+.+..+.++..++.++.++.    .++..+.+.|++.|++.|.. +....++.|++|+++||+.+++++.+..+|
T Consensus        87 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g  166 (438)
T TIGR00712        87 RSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIG  166 (438)
T ss_pred             ccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhH
Confidence            5799999999999988888877664    56788899999999988875 345567789999999999999999999999


Q ss_pred             HHHHHHHHhH-hccccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377           76 SVSEAALAWI-VMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  153 (408)
Q Consensus        76 ~~l~~~l~~~-~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  153 (408)
                      ..+++.+... +....+||+.|++.++..++. ++..+++||+|+...   ..+ .++    .   ++ +          
T Consensus       167 ~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~-~~~----~---~~-~----------  224 (438)
T TIGR00712       167 GGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCG---LPP-IEE----Y---RN-D----------  224 (438)
T ss_pred             hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcC---CCC-chh----c---cc-c----------
Confidence            9888876554 334568999999988877664 455667899876421   000 000    0   00 0          


Q ss_pred             CCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 015377          154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS  233 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  233 (408)
                        ..++. ++.++.        +. ..++...+ ..+.+++.+...    ...+.....+++...+.|....+.      
T Consensus       225 --~~~~~-~~~~~~--------~~-~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~l~~~------  281 (438)
T TIGR00712       225 --YPDDY-NEKAEQ--------EL-TAKEIFMQ-YVLPNKLLWYIA----IANVFVYLLRYGVLDWSPTYLKEV------  281 (438)
T ss_pred             --ccccc-cccccc--------cc-chHHHHHH-HHccCchHHHHH----HHHHHHHHHHHHHHHhHHHHHHHc------
Confidence              00000 000000        00 00000000 011122222211    111122233344444444433211      


Q ss_pred             cccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHH---HHHHHHHhh--hhhHHHHHHHHHHHH
Q 015377          234 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVC---IFLLPLVTL--QSNILLTALLSGARM  308 (408)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~  308 (408)
                          .+...........+..+.++++.+++++++||+++++....+.....   +....+...  .+........+...+
T Consensus       282 ----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  357 (438)
T TIGR00712       282 ----KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGF  357 (438)
T ss_pred             ----cCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence                00111112233344556778899999999999954321112211111   111111111  111211111111111


Q ss_pred             HhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhH-hhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          309 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGG-MVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       309 ~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      ...+..........|.+|++.|+++.|+.+.++++++ .++|.+.+.+.+..+....+.++.+..+++.+..+++.||.|
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       358 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             HHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            1122222223456799999999999999999999875 578999888888766666777777778888888888888876

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK03699 putative transporter; Provisional

Probab=99.90  E-value=6.5e-21  Score=182.16  Aligned_cols=311  Identities=14%  Similarity=0.176  Sum_probs=194.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+.++..++.++.++++++..+++.|+++|++.|... ....++.|+.|+++||+..+..+....+|..++
T Consensus        68 r~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~  147 (394)
T PRK03699         68 IIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIF  147 (394)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999888653 455678899999999999999888888888888


Q ss_pred             HHHHhHhc-cccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVM-PILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~-~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      +.+...+. +..+||+.|.+.+++.++..+..++ .+.|+.    ++.                         +   + +
T Consensus       148 ~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~----~~~-------------------------~---~-~  193 (394)
T PRK03699        148 PIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL----GKH-------------------------A---P-K  193 (394)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc----ccc-------------------------C---c-c
Confidence            87765543 4679999999888776655443332 232220    000                         0   0 0


Q ss_pred             cccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (408)
                      +      ++..          .+.       .+++    ..+......+.....+++...|.|.+..+..          
T Consensus       194 ~------~~~~----------~~~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~----------  236 (394)
T PRK03699        194 A------DKPV----------AKE-------KWGI----GVLFLAIAALLYILAQLTFISWVPEYAQKKF----------  236 (394)
T ss_pred             c------cCcc----------ccc-------cCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------
Confidence            0      0000          000       0011    1222222223333344455555554432110          


Q ss_pred             CccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 015377          239 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIAN  318 (408)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                      +.+............+...+|.++.++++||++||+.+.....+..+.+..+....+........+...++..+.++...
T Consensus       237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~  316 (394)
T PRK03699        237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTII  316 (394)
T ss_pred             CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            00001111112233456688999999999999999988766555444333333223222222222222233334455556


Q ss_pred             hhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 015377          319 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       319 ~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  383 (408)
                      .+..|..|.+ +++..|..+.++.+|+.++|.+.+.+.+..+....+.+.+++++++.+...+..
T Consensus       317 ~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (394)
T PRK03699        317 TLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG  380 (394)
T ss_pred             HHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence            6677877754 677889999999999999999999888876666666666666666655555554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.89  E-value=2.8e-20  Score=176.50  Aligned_cols=308  Identities=18%  Similarity=0.157  Sum_probs=182.3

Q ss_pred             CCcchhHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhH--HHHHHHHHHHHH
Q 015377            1 MEEGRMSILG-GALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKW--MVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~--~~~~~~~~~~G~   76 (408)
                      |.||||.++. +.++..++.++.++++|++.+++.|++.|.+.+.. +....+..|+.|+++|++.  .+..+.+..+|.
T Consensus        59 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  138 (375)
T TIGR00899        59 YQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAW  138 (375)
T ss_pred             ccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHH
Confidence            5788887655 45555667788899999999999999998766543 3445567788888877754  567777788999


Q ss_pred             HHHHHHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCC
Q 015377           77 VSEAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  155 (408)
Q Consensus        77 ~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  155 (408)
                      ++++.++..+.+..+||+.|++.+++.++..+ ..+++||+|+....+                                
T Consensus       139 ~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  186 (375)
T TIGR00899       139 VIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA--------------------------------  186 (375)
T ss_pred             HHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc--------------------------------
Confidence            99999888887788999999999887666544 445689877521000                                


Q ss_pred             CcccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccCCCCCcc
Q 015377          156 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASEL-SGSQSKCSSS  233 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~  233 (408)
                        ++   ..+                     .+..+ +++.+.........+.......    .+.|.. ....      
T Consensus       187 --~~---~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------  230 (375)
T TIGR00899       187 --LT---RLE---------------------VRGLLASRDTRLLFVACTLMWGCNILYI----INMPLLIIHEL------  230 (375)
T ss_pred             --cC---cch---------------------hhhhhcCcchHHHHHHHHHHHHHHHHHH----hhhHHHHHHHc------
Confidence              00   000                     00001 1111111111112221111111    111111 1000      


Q ss_pred             cccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 015377          234 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGT  313 (408)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                           +.+...............+++.++.+++.||+|||+.+..+.....+.........+............+.....
T Consensus       231 -----g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  305 (375)
T TIGR00899       231 -----GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGIL  305 (375)
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 011111111222333455677889999999999999887665544443333222222222222212222222223


Q ss_pred             hhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 015377          314 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       314 ~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  382 (408)
                      .+....+..|..|.+ |+++.|+.+...++|+.++|.+.+.+.+..+....+.+.+++++++.+...+.
T Consensus       306 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       306 AGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence            355567778999876 56999999999999999999999887776665566666666666666554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.89  E-value=1.9e-20  Score=175.42  Aligned_cols=289  Identities=27%  Similarity=0.376  Sum_probs=206.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+..+..++.++..+.+++..+++.|++.|++.+.. +....++.|+.|+++|++..+..+....+|..++
T Consensus        60 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  139 (352)
T cd06174          60 RFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLG  139 (352)
T ss_pred             HhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999998875 4556788999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCccc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  159 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (408)
                      +.++..+.+..+||+.+++.+++.++..+...+++  |+                                         
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------------------------------  176 (352)
T cd06174         140 PLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL--RL-----------------------------------------  176 (352)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HH-----------------------------------------
Confidence            99998888888899999998887766655544433  00                                         


Q ss_pred             ccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015377          160 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  239 (408)
                                                             ........+.....+.....+.+....+.          .+
T Consensus       177 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~  207 (352)
T cd06174         177 ---------------------------------------LLLLALAFFLLSFGYYGLLTYLPLYLQEV----------LG  207 (352)
T ss_pred             ---------------------------------------HHHHHHHHHHHHhHHHHHHHHHHHHHHHh----------cC
Confidence                                                   00111111112222222222222222110          01


Q ss_pred             ccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 015377          240 VQDASVYINVFITSFAELPGLLTAALLVDRVGRKL-SMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIAN  318 (408)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                      .+............+..+++.++.+++.||.|||+ .+..+..+..+.........+............+......+...
T Consensus       208 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  287 (352)
T cd06174         208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALL  287 (352)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHH
Confidence            11222333445556778889999999999999999 77777666655554444333322222222233333344557778


Q ss_pred             hhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHh
Q 015377          319 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  381 (408)
Q Consensus       319 ~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  381 (408)
                      .+..|..|.+.|+++.|+.+....+++.++|.+.+.+.+..+....+.+.+++.+++.+..++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence            899999999999999999999999999999999988877666667778888887777665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.89  E-value=2.8e-20  Score=175.54  Aligned_cols=294  Identities=13%  Similarity=0.128  Sum_probs=184.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSP-----NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTF   74 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~   74 (408)
                      |.|||+.++.+.++..++.++.++.+     +++.+++.|++.|++.+.. +....++.|+.|+++|++..+..+.+..+
T Consensus        60 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (365)
T TIGR00900        60 RYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSL  139 (365)
T ss_pred             hhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHH
Confidence            57999999999999998888888887     9999999999999998875 45567889999999999999999999999


Q ss_pred             HHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhc--cCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCC
Q 015377           75 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM--PESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  152 (408)
Q Consensus        75 G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~l--pESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  152 (408)
                      |.++++.++..+.+..+||+.|++.++..++..+..+.+  ||+++.    ++.+                         
T Consensus       140 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------------------------  190 (365)
T TIGR00900       140 FYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS----EIQA-------------------------  190 (365)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc----cccc-------------------------
Confidence            999999998888888899999998877665544433332  332110    0000                         


Q ss_pred             CCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccCCCCC
Q 015377          153 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIV-LLASELSGSQSKCS  231 (408)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~  231 (408)
                          .+       ++ ..+    +   .+   ...+.+++++...........   ....+++.. .+.|....+.    
T Consensus       191 ----~~-------~~-~~~----~---~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----  241 (365)
T TIGR00900       191 ----LS-------NA-VLR----D---TR---EGIKFVLKNPLLRTLLLLALL---FNLVFAPAIVALFPYVQSKY----  241 (365)
T ss_pred             ----cc-------hh-HHH----H---HH---hHHHHHHcCcHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHH----
Confidence                00       00 000    0   00   011122222222212111111   111111111 2222221100    


Q ss_pred             cccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHh
Q 015377          232 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-NILLTALLSGARMFS  310 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  310 (408)
                            .+.+............+..+++.++.+++.||.+||+.+..+....++.........+ ............+..
T Consensus       242 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  315 (365)
T TIGR00900       242 ------LGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGY  315 (365)
T ss_pred             ------hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Confidence                  0011112223334445677888999999999999999887765555444443333222 222222222222222


Q ss_pred             hhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 015377          311 MGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  358 (408)
Q Consensus       311 ~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~  358 (408)
                      ....+....+..|..|++.|+++.|+.+.+..+++.++|.+.+.+.+.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       316 GPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233456678889999999999999999999999999999998877664

>PRK12382 putative transporter; Provisional

Probab=99.88  E-value=4.4e-20  Score=176.40  Aligned_cols=304  Identities=19%  Similarity=0.075  Sum_probs=184.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHH---h-----hhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLS---A-----FSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTF   71 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~---~-----~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~   71 (408)
                      |.|||+.++.+.+...++.+..   +     ..++++.++++|+++|++.+.. +....+..|..|+++|+++++..+.+
T Consensus        77 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~  156 (392)
T PRK12382         77 QYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMA  156 (392)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHH
Confidence            5799999999888777655422   2     2368899999999999998765 34556788999999999999999999


Q ss_pred             HHHHHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccC
Q 015377           72 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  151 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  151 (408)
                      ..+|..++++++..+.+..+||+.+.+..+..++........||.|..                                
T Consensus       157 ~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------  204 (392)
T PRK12382        157 MYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAH--------------------------------  204 (392)
T ss_pred             HHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCC--------------------------------
Confidence            999999999998887777899998776655443332222222332110                                


Q ss_pred             CCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 015377          152 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS  231 (408)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  231 (408)
                            ++     ++.+.           ++   ..+     ..++.......    ....+.....+.+....+.+   
T Consensus       205 ------~~-----~~~~~-----------~~---~~~-----~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~---  247 (392)
T PRK12382        205 ------AG-----ERPSL-----------WS---VVG-----LIWKPGLGLAL----QGVGFAVIGTFVSLYFASKG---  247 (392)
T ss_pred             ------cc-----cCchH-----------HH---HHH-----HHHHhHHHHHH----HHHHHhHHHHHHHHHHHhcC---
Confidence                  00     00000           00   000     11111111111    11112122222221111100   


Q ss_pred             cccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 015377          232 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSM  311 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (408)
                              ....  ........+..+++.++.+++.||+|||+.+..+..+..+.........+.........+..+...
T Consensus       248 --------~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  317 (392)
T PRK12382        248 --------WAMA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCS  317 (392)
T ss_pred             --------Cchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence                    0011  112223345567888999999999999988877655554443333332322222111111112112


Q ss_pred             hhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 015377          312 GTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       312 ~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  383 (408)
                      ...+.......|.+|.+.|+++.|+.+....+|+.++|.+.+.+.+..+....+.+.+.+.+++.+..++..
T Consensus       318 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        318 LIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhc
Confidence            223445556688999999999999999999999999999999888877766677777777777766666553

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.88  E-value=1.8e-19  Score=176.50  Aligned_cols=314  Identities=18%  Similarity=0.144  Sum_probs=192.2

Q ss_pred             CcchhH-HHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            2 EEGRMS-ILGGALVTFVAGLLSAFS---PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         2 ~gRr~~-~~~~~~~~~~~~~~~~~~---~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      .|||+. +..+.+...++..+.++.   +++..+.+.|++.|++.+.. .....+..|++|+++||+..++...++.+|.
T Consensus        77 ~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~  156 (491)
T PRK11010         77 LGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAM  156 (491)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH
Confidence            399986 556666666776777675   47888999999999877654 4556788999999999999999999999999


Q ss_pred             HHHHHHHhHhcc-ccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCC
Q 015377           77 VSEAALAWIVMP-ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  155 (408)
Q Consensus        77 ~l~~~l~~~~~~-~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  155 (408)
                      ++++.+...+.+ ..|||..|++.++..++..+..++.||+|+..    +.++.                          
T Consensus       157 llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~----~~~~~--------------------------  206 (491)
T PRK11010        157 LVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI----PVPKT--------------------------  206 (491)
T ss_pred             HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc----ccccc--------------------------
Confidence            999988887777 56999999998887776666666678875410    00000                          


Q ss_pred             CcccccCCCCCccccccccccccccccccchhhhccc-hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccCCCCCcc
Q 015377          156 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIV-LLASELSGSQSKCSSS  233 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~  233 (408)
                              .++ .              ....++++++ ++.+. .....+.+.   ...+... ...+.+....      
T Consensus       207 --------~~~-~--------------~~~~l~~~~~~~~~~~-~ll~~~l~~---~~~~~~~~~~~~~l~~~~------  253 (491)
T PRK11010        207 --------LEQ-A--------------VVAPLRDFFGRNNAWL-ILLLIVLYK---LGDAFAMSLTTTFLIRGV------  253 (491)
T ss_pred             --------hhh-h--------------HHHHHHHHHcCcCHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHhc------
Confidence                    000 0              0001112222 22222 111111111   1111111 1122221110      


Q ss_pred             cccccCccchhHHHH-HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH---HHhhhhhH-HHHHHHHHHHH
Q 015377          234 ILLSENVQDASVYIN-VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP---LVTLQSNI-LLTALLSGARM  308 (408)
Q Consensus       234 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~  308 (408)
                           +.+....... .....+..++|.+++++++||+|||+.+..+.+...+....   +....++. ......+...+
T Consensus       254 -----G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~  328 (491)
T PRK11010        254 -----GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENL  328 (491)
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence                 1111122222 23444677899999999999999988776544433322211   11211121 11111111111


Q ss_pred             HhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 015377          309 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       309 ~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  383 (408)
                      +........+.+..++.|.+.+++..|+.++...+|+.+.+.+.+.+.+..+....|.+.+++++++.+..++++
T Consensus       329 ~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        329 CGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            111223445777889999999999999999999999888887888888877766667777788888777776664

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.88  E-value=9.3e-21  Score=179.62  Aligned_cols=310  Identities=16%  Similarity=0.249  Sum_probs=181.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+.++..++.++.++++++..+++.|++.|++.|.. +....++.|+.|+++|++..++.+.+..+|..++
T Consensus        56 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  135 (379)
T TIGR00881        56 RSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLL  135 (379)
T ss_pred             hhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHH
Confidence            579999999999999999999999999999999999999998875 4566788999999999999999999999999999


Q ss_pred             H-HHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCc
Q 015377           80 A-ALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  157 (408)
Q Consensus        80 ~-~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  157 (408)
                      + .+...+.+..+||+.|++.++..++. .+..++.||+|+..   ++.++              +  +..   +  ++.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------~--~~~---~--~~~  191 (379)
T TIGR00881       136 PPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC---GLPPA--------------E--EMP---N--EEP  191 (379)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcccc---ccCcc--------------c--cCc---c--ccc
Confidence            9 46666666789999999887766554 44556678876521   00000              0  000   0  000


Q ss_pred             ccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 015377          158 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILL  236 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  236 (408)
                      +++.+  +++       +.. ..++  ...+.++ ++..+.    .....+......++...+.|....+.         
T Consensus       192 ~~~~~--~~~-------~~~-~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---------  246 (379)
T TIGR00881       192 DGDAE--KKE-------EEL-TKKQ--IFLQYVLLNKVLWY----ISLGYVFVYVVRTGILDWSPLYLTQE---------  246 (379)
T ss_pred             ccccc--ccc-------ccc-cchH--HHHHHHHhcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            00000  000       000 0000  0111111 222221    11222222222222222333221100         


Q ss_pred             ccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhc-hHH-HHHHHHHHHH-HHHHHHHh--hhhhHHHHHHHHHHHHHhh
Q 015377          237 SENVQDASVYINVFITSFAELPGLLTAALLVDRVG-RKL-SMTIMFIFVC-IFLLPLVT--LQSNILLTALLSGARMFSM  311 (408)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~g-rR~-~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~  311 (408)
                       .+.+............+.+++|.++.+++.||.. ||+ .......... +.+.....  ..+........+...++..
T Consensus       247 -~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  325 (379)
T TIGR00881       247 -KGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVY  325 (379)
T ss_pred             -hCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHh
Confidence             0011112222334445677889999999999863 333 2222111111 11111111  1111111112222222233


Q ss_pred             hhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 015377          312 GTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  360 (408)
Q Consensus       312 ~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~  360 (408)
                      +.....+.+.+|.+|++.|+++.|+.+.++.+|+.++|.+.+.+.+..+
T Consensus       326 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  374 (379)
T TIGR00881       326 GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG  374 (379)
T ss_pred             hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence            4445556788999999999999999999999999999999988877654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.87  E-value=5e-20  Score=180.99  Aligned_cols=328  Identities=13%  Similarity=0.155  Sum_probs=191.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.++.+.++..++.+++++++|+..++++|+++|++.|.. +....++.|++|+++||+..++++....+|..++
T Consensus        63 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g  142 (485)
T TIGR00711        63 RFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALG  142 (485)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhh
Confidence            579999999999999999999999999999999999999998875 4566788999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHH-HHHHhccCcchhHhhcCChhhHHHHHHHHH------HHcCCCCCCCCccCC
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIA------QFNQTSLPSGNLTSD  152 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~-~~~~~lpESp~~l~~~~~~~~a~~~l~~~~------~~~~~~~~~~~~~~~  152 (408)
                      +.++..+.++.+||+.|++.+.+.++.. +..+++||+++-  .+++.|.....+....      .....+.  .     
T Consensus       143 ~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~--~-----  213 (485)
T TIGR00711       143 PTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPE--R-----  213 (485)
T ss_pred             hccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCC--C-----
Confidence            9999888888999999999887766553 345567775541  1222222211111000      0000000  0     


Q ss_pred             CCCCcccccCCCCCccccc-------cccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015377          153 GTNDLDEEFSTSEETPLLS-------SARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSG  225 (408)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  225 (408)
                            +..++.+......       .....+...+++....+.+.+++.+...+..    +...+.+++...+.|....
T Consensus       214 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~  283 (485)
T TIGR00711       214 ------GWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYM----SLLGLGLYGSFYLLPLYLQ  283 (485)
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence                  0000000000000       0000000001111111222233333222222    2222233333333333221


Q ss_pred             cCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-h--hhhH-HHHH
Q 015377          226 SQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-L--QSNI-LLTA  301 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~--~~~~-~~~~  301 (408)
                      +.          .+.+............+..+++.++.+++.||+|||+.+..+.....+....+.. .  ..+. ....
T Consensus       284 ~~----------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (485)
T TIGR00711       284 QV----------LGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIAL  353 (485)
T ss_pred             Hh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence            10          0011112223334455677889999999999999999887766555544333331 1  1111 1111


Q ss_pred             HHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhh
Q 015377          302 LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  357 (408)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~  357 (408)
                      ......+.....+........|..|++.|+++.|+.+....+|+.+++.+.+.+.+
T Consensus       354 ~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       354 PQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11112222112223344455688899999999999999999999999888876665

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.87  E-value=4e-19  Score=169.75  Aligned_cols=312  Identities=13%  Similarity=0.144  Sum_probs=175.0

Q ss_pred             CCcchhHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hccCCcchhhhHHHhhhcCCCcc--hhHHHHHHHHHHHHH
Q 015377            1 MEEGRMSI-LGGALVTFVAGLLSAFSPNYISLLILRGLA-GAGLGSGHVFFSWFMEFVPPSNR--GKWMVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~-Gi~~g~~~~~~~~~~E~~p~~~R--g~~~~~~~~~~~~G~   76 (408)
                      |.||||.+ ..+.+...++..+.+++++++.+++.+.+. |.+....+....+..|+.|+++|  +...+..+.+.++|.
T Consensus        77 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~  156 (393)
T PRK15011         77 KRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAW  156 (393)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHH
Confidence            56898875 455566667777788999999876665544 44433334445566787777666  345578888999999


Q ss_pred             HHHHHHHhHhccccchHHHHHHhhHHHHHHH-HHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCC
Q 015377           77 VSEAALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  155 (408)
Q Consensus        77 ~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~-~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  155 (408)
                      +++++++..+.++.|||+.|++.++..++.. +...++||+|+-   + + ++                           
T Consensus       157 ~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~---------------------------  204 (393)
T PRK15011        157 VIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---L-P-LA---------------------------  204 (393)
T ss_pred             HHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---C-c-cc---------------------------
Confidence            9999999988888899999998887766553 445567876530   0 0 00                           


Q ss_pred             CcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 015377          156 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  235 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  235 (408)
                        ++     +.+..      +    ++         .++.+.........+    ..++....+.|....+.        
T Consensus       205 --~~-----~~~~~------~----~~---------~~~~~~~~~~~~~~~----~~~~~~~~~~p~~l~~~--------  246 (393)
T PRK15011        205 --TG-----TLEAP------R----RN---------RRDTLLLFVICTLMW----GTNSLYIINMPLFIINE--------  246 (393)
T ss_pred             --cc-----ccccc------c----cc---------cccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH--------
Confidence              00     00000      0    00         000111111111111    11111112222211100        


Q ss_pred             cccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhh
Q 015377          236 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFI  315 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (408)
                        .+.+...............+++.++.++++||+|||+.+..+.....+........++............+......+
T Consensus       247 --~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~  324 (393)
T PRK15011        247 --LHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGG  324 (393)
T ss_pred             --cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence              001111111122233455677889999999999999877665444333322222222222211111111111111123


Q ss_pred             hhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          316 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       316 ~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      ....+..|.+|.+ |+++.++.+....+|+.++|.+.+.+.+..+....+.+.+++++++.+..++. |||
T Consensus       325 ~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~  393 (393)
T PRK15011        325 IGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI-KDV  393 (393)
T ss_pred             HHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence            3455668999975 99999999998899999999999888776555555555566666665555544 554

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.87  E-value=1.8e-19  Score=172.93  Aligned_cols=316  Identities=15%  Similarity=0.117  Sum_probs=193.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   80 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   80 (408)
                      |.|||+.++.+.++..++.++.++.++++.+++.|++.|++.+..+....++.|..|+++|++..+..+....+|.++++
T Consensus        80 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  159 (408)
T PRK09874         80 RKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGP  159 (408)
T ss_pred             hhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999888888999999999999999997554444455778999999999999999999999999999


Q ss_pred             HHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCccc
Q 015377           81 ALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  159 (408)
Q Consensus        81 ~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (408)
                      .++..+.+..+||+.|++.++..++..+ ..+++||+++-.   ++.+  ....+                         
T Consensus       160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~-------------------------  209 (408)
T PRK09874        160 LAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKE--MLHMR-------------------------  209 (408)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchh--hhHHH-------------------------
Confidence            9988887788999999998877655433 445566653210   0000  00000                         


Q ss_pred             ccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccC
Q 015377          160 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSEN  239 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  239 (408)
                                      +         ....+.+++.+..........   .........+.+....+..         ..
T Consensus       210 ----------------~---------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---------~~  252 (408)
T PRK09874        210 ----------------E---------VVTSLKNPKLVLSLFVTTLII---QVATGSIAPILTLYVRELA---------GN  252 (408)
T ss_pred             ----------------H---------HHHhCcCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh---------cc
Confidence                            0         000111122222111111111   0111011011110000000         00


Q ss_pred             ccch--hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhh
Q 015377          240 VQDA--SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIA  317 (408)
Q Consensus       240 ~~~~--~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
                      ....  .......+..+..+++....++++||+|||+.+..+.....+..+......+............++.....+..
T Consensus       253 ~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  332 (408)
T PRK09874        253 VSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAV  332 (408)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHH
Confidence            0000  01111222345566777888999999999998877666554444333333322222222222222222233444


Q ss_pred             hhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 015377          318 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       318 ~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  383 (408)
                      .....|..|.+.|++..++.+.+..+|..++|.+.+.+.+..+....+.+.+++.+++.+..++..
T Consensus       333 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~  398 (408)
T PRK09874        333 QTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL  398 (408)
T ss_pred             HHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            555678889999999999999999999999999988877766666777777777777766665543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.87  E-value=8.3e-19  Score=167.56  Aligned_cols=117  Identities=20%  Similarity=0.270  Sum_probs=100.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.++.+.++..++.++..+++++..+++.|+++|++.+... ....++.|..|+++|++..+..+....+|..++
T Consensus        64 r~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~  143 (392)
T PRK10473         64 RSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLA  143 (392)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999988753 456678999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESP  117 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp  117 (408)
                      +.++..+.+..+||+.|++.++..++. .+..+.+||++
T Consensus       144 ~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        144 PVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            988887777789999999988766554 34456677764

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.87  E-value=9.9e-19  Score=166.91  Aligned_cols=117  Identities=24%  Similarity=0.315  Sum_probs=101.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.++.+.++..++.++.++++|++.+++.|+++|++.|.. +....++.|++|+++|++..+......++|.+++
T Consensus        81 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig  160 (394)
T PRK10213         81 ATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIA  160 (394)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999999875 4556678899999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESP  117 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpESp  117 (408)
                      +.++..+.+..+||+.|++.++..++..+ .....||+|
T Consensus       161 ~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        161 APLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            99999888888999999998776655433 333467654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.87  E-value=4.2e-19  Score=168.95  Aligned_cols=306  Identities=12%  Similarity=0.069  Sum_probs=181.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+++.++.++..++.++.++++|++.+++.|++.|++.|... ....++.|+.|+++|++.++.+..+..+|..++
T Consensus        64 r~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  143 (382)
T PRK10091         64 RYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLG  143 (382)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999999999999999999988753 445567899999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHH-HHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~-~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      ++++..+.+..+||+.|++.++..++.. ..+.++||.++    +.+.+ .                            +
T Consensus       144 ~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~~-~----------------------------~  190 (382)
T PRK10091        144 IPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKGG-L----------------------------R  190 (382)
T ss_pred             ccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----ccccC-H----------------------------H
Confidence            9988887777899999999887665543 34556777532    00000 0                            0


Q ss_pred             cccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccCCCCCcccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGI-VLLASELSGSQSKCSSSILLS  237 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~  237 (408)
                                      +          ..+.+.+++.+.    .....+......+.. .+..+.+....          
T Consensus       191 ----------------~----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  230 (382)
T PRK10091        191 ----------------E----------QFHFLRSPAPWL----IFAATMFGNAGVFAWFSYIKPYMMFIS----------  230 (382)
T ss_pred             ----------------H----------HHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Confidence                            0          000111111111    111111111111111 11112221100          


Q ss_pred             cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhh-
Q 015377          238 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFI-  315 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-  315 (408)
                       +.+............+..+++.++.+++.||+|+|+.+..+..+..+..+.+.. .++................+..+ 
T Consensus       231 -g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  309 (382)
T PRK10091        231 -GFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAP  309 (382)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHH
Confidence             111112223334455778899999999999999998887665554443322222 22222211111111111111112 


Q ss_pred             hhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc-chhhHHHHHHHHHHHHHHHHHhc
Q 015377          316 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       316 ~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~  382 (408)
                      .......+..|.+.++.+  ..+....+|+.++|.+.+.+.+.. +....+.+.+..+++......++
T Consensus       310 ~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (382)
T PRK10091        310 LQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY  375 (382)
T ss_pred             HHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            222344555666655554  346667789999999998888753 34445555555554444444444

>PRK10504 putative transporter; Provisional

Probab=99.86  E-value=2e-18  Score=169.00  Aligned_cols=333  Identities=14%  Similarity=0.111  Sum_probs=184.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      +.|||+.++.+.++..++.++++++++++.+++.|+++|++.|.. +....++.|+.|+++|++..++.+....+|..++
T Consensus        71 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  150 (471)
T PRK10504         71 RVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLG  150 (471)
T ss_pred             HhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence            469999999999999999988999999999999999999999875 4556678899999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCcchhHhhcCChhhHHHHHHHHHH------HcCCCCCCCCccCC
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQ------FNQTSLPSGNLTSD  152 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~------~~~~~~~~~~~~~~  152 (408)
                      +.++..+.+..+||+.|.+......+..+ .....||++.   ++.|.+.+.....-...      .++.+ ...     
T Consensus       151 ~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----  221 (471)
T PRK10504        151 PALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSK-GLG-----  221 (471)
T ss_pred             hHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCC-cCC-----
Confidence            99998888888999999987665544433 3445565442   22333333221111100      00000 000     


Q ss_pred             CCCCcccccCCC-CCccc-cccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 015377          153 GTNDLDEEFSTS-EETPL-LSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  230 (408)
Q Consensus       153 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  230 (408)
                       ........... ..... .-..+++  ..+++..+.+.+.+++++.......+..+......+...++.....      
T Consensus       222 -~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------  292 (471)
T PRK10504        222 -LSPLAIAGLVAVGVVALLLYLLHAR--NNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGL------  292 (471)
T ss_pred             -cchHHHHHHHHHHHHHHHHHHHHHh--cCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------
Confidence             00000000000 00000 0000000  0000011122222333322211112222222111111112211111      


Q ss_pred             CcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--hhhHH-HHHHHHHHH
Q 015377          231 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--QSNIL-LTALLSGAR  307 (408)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~  307 (408)
                              +..............+..+++..+.+.+.||+|||+.+..+..+..+....+...  .+... .........
T Consensus       293 --------g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  364 (471)
T PRK10504        293 --------GFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQG  364 (471)
T ss_pred             --------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence                    0111111222233345556677889999999999999877666554443333221  11111 111111111


Q ss_pred             HHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc
Q 015377          308 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  359 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~  359 (408)
                      +.....++.......+.+|.+.|+++.|+.+...++|+.++|.+.+.+.+..
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        365 MVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222233455667778999999999999999999999999988877665543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.86  E-value=8.4e-20  Score=171.43  Aligned_cols=287  Identities=25%  Similarity=0.377  Sum_probs=178.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||++++.+.++..++..+..+++|++.+++.|++.|++.+.. +....++.|+.|+++|++..+..+....+|.+++
T Consensus        58 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g  137 (352)
T PF07690_consen   58 RFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILG  137 (352)
T ss_dssp             HS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcc
Confidence            479999999999999999666667788889999999999998765 4567789999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      +.++..+.+..+||+.|++.++..++..+ ...+++|+|+....+.                                 +
T Consensus       138 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~---------------------------------~  184 (352)
T PF07690_consen  138 PLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERES---------------------------------P  184 (352)
T ss_dssp             HHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--S---------------------------------S
T ss_pred             cchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccc---------------------------------c
Confidence            99999888888999999999888777654 3455565544110000                                 0


Q ss_pred             cccCCCCCccccccccccccccccccch-hhhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSS-FLMLFSPR-FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILL  236 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  236 (408)
                      +     +++   +       +.+++..+ ++.+++++ .+    ......+...+.++....+.|......         
T Consensus       185 ~-----~~~---~-------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~---------  236 (352)
T PF07690_consen  185 K-----ESE---S-------KKPKPLKPGFKSLFKNPVLW----ILLIAFFLFFFVFSGFSFFLPLYLQEV---------  236 (352)
T ss_dssp             T-----TTT------------HHHCCCH-CTHHHHHHCCH----HHHHHHHHHHHHHHHHHHHHHHHCCHH---------
T ss_pred             c-----ccc---c-------ccccccccccccccccchhh----hhhhhhhHHHHHHHHhhcccchhhhhc---------
Confidence            0     000   0       00000011 11222221 22    122222222333333444444321100         


Q ss_pred             ccCcc-chhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHhhh
Q 015377          237 SENVQ-DASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT---LQSNILLTALLSGARMFSMG  312 (408)
Q Consensus       237 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  312 (408)
                       .+.+ .........+..+.++++.++.++++||+++|+..........+....+..   ..+............++...
T Consensus       237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  315 (352)
T PF07690_consen  237 -LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGI  315 (352)
T ss_dssp             -HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence             0111 122222234455667778999999999999877665544444333333222   11222222222222233333


Q ss_pred             hhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHH
Q 015377          313 TFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCP  349 (408)
Q Consensus       313 ~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p  349 (408)
                      ..+....+..|.+|++.|+++.|+.+.+..+++.++|
T Consensus       316 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  316 VFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            4577788899999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.86  E-value=3.9e-18  Score=162.33  Aligned_cols=117  Identities=18%  Similarity=0.290  Sum_probs=101.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+.++..++.++.++++++..+++.|++.|++.+.. +....++.|+.|+++|++..+..+....+|..++
T Consensus        66 ~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  145 (385)
T TIGR00710        66 RYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVA  145 (385)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999998875 4556788999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHH-HHHHhccCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESP  117 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~-~~~~~lpESp  117 (408)
                      +.++..+.+..+||+.+++.++..++.. ...++.||++
T Consensus       146 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       146 PLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            9998887778899999998877665543 3445567754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.85  E-value=9.7e-19  Score=166.66  Aligned_cols=305  Identities=15%  Similarity=0.179  Sum_probs=181.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFS-----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTF   74 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~   74 (408)
                      |.|+|+++.++.+++++.+++.+++     +++..+++.|++.|++ |.. .+....+++++|+++||+++++......+
T Consensus        96 r~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~  174 (462)
T PRK15034         96 IFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNL  174 (462)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhh
Confidence            5799999999999999999999987     8999999999999998 444 45667889999999999999999655555


Q ss_pred             HHHHHHHHHhHhc------------------cccchHHHHHHhhHHHHHHHHH-HHhccCcchhHhhcCChhhHHHHHHH
Q 015377           75 GSVSEAALAWIVM------------------PILTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDK  135 (408)
Q Consensus        75 G~~l~~~l~~~~~------------------~~~~Wr~~f~i~~i~~~~~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~  135 (408)
                      |..+++.+...+.                  +..+||...++-.++.++..+. ++.++|.|.   .+.+.       + 
T Consensus       175 G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~~~-------~-  243 (462)
T PRK15034        175 GVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRASI-------A-  243 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccCH-------H-
Confidence            6654444332211                  1334888877766665555443 333433221   00000       0 


Q ss_pred             HHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 015377          136 IAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYG  215 (408)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (408)
                                                                       .....+.+++.|    ++...+++..-.|.+
T Consensus       244 -------------------------------------------------~~~~vlk~~~~W----llslly~~tFG~fvg  270 (462)
T PRK15034        244 -------------------------------------------------DQLPVLQRLHLW----LLSLLYLATFGSFIG  270 (462)
T ss_pred             -------------------------------------------------HHHHHhCCCchh----HHHHHHHHHHHHHHH
Confidence                                                             001112223322    333334443334444


Q ss_pred             HHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH--hh
Q 015377          216 IVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV--TL  293 (408)
Q Consensus       216 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~--~~  293 (408)
                      +..+.|.+..+.            .+........++..+.+.++..++|+++||+|+|+++..+.....+......  ..
T Consensus       271 ~s~~lp~~~~~~------------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp  338 (462)
T PRK15034        271 FSAGFAMLAKTQ------------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP  338 (462)
T ss_pred             HHHHHHHHHHHH------------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc
Confidence            444444432110            0111222223444566777889999999999999988876655444332211  11


Q ss_pred             hh---hHHHHHHHHHHHHHhhh-hhhhhhhhcccccCC---------------------chhhHHHhHHHHhhhHhHhhH
Q 015377          294 QS---NILLTALLSGARMFSMG-TFIIANIFAPEIYPT---------------------SMRSTGAGVAYAVGRIGGMVC  348 (408)
Q Consensus       294 ~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~el~p~---------------------~~R~~a~gi~~~~~~~~~~~~  348 (408)
                      .+   +.......+...+...| .+...+-+.+.+||.                     +.-+.+.|+..+.|.+|+++.
T Consensus       339 ~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~  418 (462)
T PRK15034        339 GTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFI  418 (462)
T ss_pred             cccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchh
Confidence            11   11111111222222222 234566677888885                     145788899999999999999


Q ss_pred             HHHHHHHhhhcchh-hHHHHHHHHHHHHHHHHHhc
Q 015377          349 PLVAVGLVTSCHQT-AAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       349 p~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~  382 (408)
                      |.+++...+..+.+ ..+..+.+..++|.++....
T Consensus       419 p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        419 PQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99888777665543 34555666655555554433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.85  E-value=4.5e-18  Score=163.32  Aligned_cols=118  Identities=19%  Similarity=0.196  Sum_probs=99.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.++++.++..++.++.+++++++.+++.|++.|++.+.. +....++.|..|+++|++..+.......+|..++
T Consensus        74 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g  153 (406)
T PRK15402         74 RIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLG  153 (406)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999998765 4556678899999999999988888888888999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCcch
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPR  118 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~  118 (408)
                      +.++..+.++.+||+.|++.++..++..+ .++..||+++
T Consensus       154 ~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        154 PLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            98888777778999999988877665544 4455677643

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.85  E-value=1.6e-18  Score=170.36  Aligned_cols=333  Identities=12%  Similarity=0.066  Sum_probs=184.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhh-cCCCcchhHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEF-VPPSNRGKWMVVFSTFWTFGSVS   78 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~-~p~~~Rg~~~~~~~~~~~~G~~l   78 (408)
                      |.|||+.++.+.+++.++++++++++|++.++++|+++|+|.|.. +.....+.+. .|+++|++..+++.....+|..+
T Consensus        67 ~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~  146 (495)
T PRK14995         67 RIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF  146 (495)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999988764 3344445454 57899999999999999999999


Q ss_pred             HHHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHH------HHHHcCCCCCCCCccC
Q 015377           79 EAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDK------IAQFNQTSLPSGNLTS  151 (408)
Q Consensus        79 ~~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~------~~~~~~~~~~~~~~~~  151 (408)
                      +|.++..+.++.+|||.|++.....++. .+..+++||+|+..  +++.|.....+..      ........  ...   
T Consensus       147 gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~--~~~---  219 (495)
T PRK14995        147 GPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTAL--KGF---  219 (495)
T ss_pred             HHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhcc--ccC---
Confidence            9999999989999999999886655544 34556778876421  1122211111000      00000000  000   


Q ss_pred             CCCCCcccccCC-CCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 015377          152 DGTNDLDEEFST-SEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  230 (408)
Q Consensus       152 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  230 (408)
                        .......... .... ........+...+++......+.++..+. .   ....+.....+++...+.|...+..   
T Consensus       220 --~~~~~~~~~~~~~~~-~l~~f~~~e~~~~~p~~~~~lf~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~lq~v---  289 (495)
T PRK14995        220 --LSLWVTSLTLLTGAL-LLGLFIRTQLAASRPMIDMRLFTHRIILS-G---VVMAMTAMITLVGFELLMAQELQFV---  289 (495)
T ss_pred             --CchHHHHHHHHHHHH-HHHHHHHHHhcCCCCCcCHHHhCCcccHH-H---HHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence              0000000000 0000 00000000000111111222222222221 1   1222222233333333333221100   


Q ss_pred             CcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHH
Q 015377          231 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---QSNILLTALLSGAR  307 (408)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  307 (408)
                             .+.+............+...++..+.|++.||+|||+.+..+..+..+....+...   .+............
T Consensus       290 -------~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G  362 (495)
T PRK14995        290 -------HGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLG  362 (495)
T ss_pred             -------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence                   00111112222333446667888999999999999998877665554433322221   11111111222222


Q ss_pred             HHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhh
Q 015377          308 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  357 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~  357 (408)
                      +......+.......+..|.+.++.+.++.+....+|+.+++.+.+.+.+
T Consensus       363 ~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        363 FSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222234455566788999999999999999999998888877766543

>TIGR00897 2A0118 polyol permease family

Probab=99.85  E-value=8.1e-18  Score=161.23  Aligned_cols=313  Identities=15%  Similarity=0.140  Sum_probs=179.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHH---hh-hhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLS---AF-SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFG   75 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~---~~-~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G   75 (408)
                      |.|||+.+..+.++..++.++.   +. .+++..+++.|++.|++.+.. +....++.|..|+++||+.+++.+....+|
T Consensus        74 r~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  153 (402)
T TIGR00897        74 IIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIG  153 (402)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            5799999999999998887654   23 358889999999999987754 344556789999999999999999999999


Q ss_pred             H-HHHHHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377           76 S-VSEAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  153 (408)
Q Consensus        76 ~-~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  153 (408)
                      . ++++.++..+.+..+|+..++.......+. .+..+..+|.|+   .+.+                            
T Consensus       154 ~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------------------  202 (402)
T TIGR00897       154 IGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT---PQHM----------------------------  202 (402)
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC---cccc----------------------------
Confidence            6 578887766666778665544332222221 222333333211   0000                            


Q ss_pred             CCCcccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 015377          154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  232 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  232 (408)
                          ++    .++.   ++.       +   +..+..+ +++.+    ......+.+...+++...+.|......+    
T Consensus       203 ----~~----~~~~---~~~-------~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~g----  253 (402)
T TIGR00897       203 ----QT----REKF---SEL-------G---KAATILFTNPNVL----LGGMVRIINTIGLFGFAVFLPMFVAELG----  253 (402)
T ss_pred             ----cC----Ccch---hhH-------H---HHHHHHHcChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcC----
Confidence                00    0000   000       0   0011111 22222    2222333344455555555554432111    


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHH-HHHHHHHHHHHHH---h--hhhhHHHHHHHHHH
Q 015377          233 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLV---T--LQSNILLTALLSGA  306 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~-~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~  306 (408)
                             .+............++.+++.++.++++||+|||+.... +.....+....+.   .  .++...........
T Consensus       254 -------~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (402)
T TIGR00897       254 -------FSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIAL  326 (402)
T ss_pred             -------CChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence                   111111122233456778899999999999998876532 2222222111111   1  11111111111111


Q ss_pred             HHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 015377          307 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  382 (408)
                      .++..+..+ .....+|..| +.|+++.|+.+....+++.++|.+.+.+.+..+....+.+.+++.+++.+...|.
T Consensus       327 G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       327 GIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            222112222 2344567766 4799999999999999999999999988887776667777777777776666654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.84  E-value=1.1e-19  Score=174.54  Aligned_cols=334  Identities=17%  Similarity=0.233  Sum_probs=192.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 015377            4 GRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAAL   82 (408)
Q Consensus         4 Rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l   82 (408)
                      -.+.+....+.+++.++++++.+|++.+++.|++.|+..++. +....+++-|+.++|||++++++.....+|.+.++++
T Consensus       110 ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggli  189 (495)
T KOG2533|consen  110 LSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLI  189 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHH
Confidence            356777888889999989999999999999999999999887 4556678999999999999999999999999999999


Q ss_pred             HhHh------ccccchHHHHHHhhHHHHHH-HHHHHhccCcch--hHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377           83 AWIV------MPILTWRWLLALSAIPAFVL-LIFIVFMPESPR--YLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  153 (408)
Q Consensus        83 ~~~~------~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  153 (408)
                      ++.+      ....||||+|++.++..++. ++.++++|++|.  |...+++.+   -..++.++.+.++          
T Consensus       190 A~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~---~~~~~~~~~~~~~----------  256 (495)
T KOG2533|consen  190 AYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKE---LVVERLRESPSGG----------  256 (495)
T ss_pred             HHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHH---HHHHHHHhccCCC----------
Confidence            9985      33569999999999887776 456788999998  332221111   1111211110000          


Q ss_pred             CCCcccccCCCCCccccccccccccccccccchhhh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 015377          154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLM-LFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  232 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  232 (408)
                         .++                     +.++.++++ +..++.|    ...+.+++....-|+...|.|.+..+..    
T Consensus       257 ---~~~---------------------~~~~~~~~~a~~dp~vw----~~~l~~~~~~lv~~~~~~~lpl~l~~~~----  304 (495)
T KOG2533|consen  257 ---IEN---------------------KFKWKGFKEALKDPGVW----PFSLCYFFLKLVNYGFSYWLPLYLKSNG----  304 (495)
T ss_pred             ---ccc---------------------ccCHHHHHHHHhchhHH----HHHHHHHHHhhccccHHHHHHHHHHcCC----
Confidence               000                     001112222 2233333    2334444455555556666665543200    


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhh----hchHHHHHHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHH
Q 015377          233 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDR----VGRKLSMTIMFIFVCIFL-LPLVTLQSNILLTALLSGAR  307 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr----~grR~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  307 (408)
                            ...............++++++.+++++++||    ..+|........+..... ..+...............+.
T Consensus       305 ------~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~  378 (495)
T KOG2533|consen  305 ------GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGP  378 (495)
T ss_pred             ------CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcc
Confidence                  0001111122334467788999999999999    556665554433333222 22222221222211122222


Q ss_pred             HHhhhhhhhhhhhcccccCCchhhHHHhHHHHh-hhHhHhhHHHHHHHHhhhc-chhhHH-HHHHHHHHHHHHHHHhccc
Q 015377          308 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAV-GRIGGMVCPLVAVGLVTSC-HQTAAI-LLLEALIVLSVVVILLIPF  384 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~-~~~~~~~~p~~~~~l~~~~-~~~~~~-~~~~~~~~i~~~~~~~~~~  384 (408)
                      +...........+.++......|..+...++.. ...+++++|.+........ .....+ .+.+.+..+..+++.++..
T Consensus       379 ~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~~~~~~~~~~v~~~~~  458 (495)
T KOG2533|consen  379 YGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVAACVGIVLLLVILFYK  458 (495)
T ss_pred             hhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233455566667777666665555555554 4467777777664433321 222333 3444333333333333333


Q ss_pred             ccCC
Q 015377          385 ETKG  388 (408)
Q Consensus       385 et~~  388 (408)
                      |.++
T Consensus       459 ~~~n  462 (495)
T KOG2533|consen  459 EREN  462 (495)
T ss_pred             HHHH
Confidence            4443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.84  E-value=5.7e-18  Score=160.88  Aligned_cols=117  Identities=19%  Similarity=0.303  Sum_probs=101.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+.++..++.++..+++++..+++.|++.|++.+.. +....++.|+.|+++|++.+++.+....+|..++
T Consensus        52 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  131 (377)
T PRK11102         52 SFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLA  131 (377)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999988765 3456688999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESP  117 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp  117 (408)
                      +.++..+.+..+||+.|++.++..++. .+..+++||++
T Consensus       132 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102        132 PIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            999887777789999999888776655 34456677754

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.84  E-value=4.3e-18  Score=162.46  Aligned_cols=319  Identities=12%  Similarity=0.041  Sum_probs=187.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||++++.+.+++.+++++++++++.   ++.|+++|++.|.. ++..+++.|++|+++|+++.+..+....+|.+++
T Consensus        64 r~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~G  140 (393)
T PRK11195         64 SFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLG  140 (393)
T ss_pred             ccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999888887777664   78999999998875 5667789999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCccc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  159 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (408)
                      |.++..+.+. .|+..+.+.+...++..+..+.+||+|+...  ++.++..+.++...                      
T Consensus       141 p~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~----------------------  195 (393)
T PRK11195        141 TVLGGALADP-HAEAALAVCALIYLLAALFNLFIPRLGARRP--GQSWNPIALLRDFF----------------------  195 (393)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCccccc--ccCCCHHHHHHHHH----------------------
Confidence            9998887653 4888877766555444555667888764210  00000000000000                      


Q ss_pred             ccCCCCCccccccccccccccccccchhhhccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015377          160 EFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTIL-LWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  238 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (408)
                                               ...+.+++.+..+.... ....+.......+....|.+...+             
T Consensus       196 -------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg-------------  237 (393)
T PRK11195        196 -------------------------HACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALG-------------  237 (393)
T ss_pred             -------------------------HHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------------
Confidence                                     00111222222222221 122222222222333233332211             


Q ss_pred             CccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 015377          239 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIAN  318 (408)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                       .+............++.++|.++.+++.||.++|+.+..+..+. .....+....+.+..........++.....+...
T Consensus       238 -~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~  315 (393)
T PRK11195        238 -ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILMG-LVVLLMALQHSLLPAYPLLILIGALGGFFVVPMN  315 (393)
T ss_pred             -CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHH
Confidence             11112223334455677888899999999988887776654332 2222222222222222222122222111123334


Q ss_pred             hhcccccCCch-hhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          319 IFAPEIYPTSM-RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       319 ~~~~el~p~~~-R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      ....|..|.+. ++++.++.+....++..++..+...+ +..+-...+.+.++..+++....+.+....++
T Consensus       316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK11195        316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWRWHRRN  385 (393)
T ss_pred             HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44567766665 79999999999999888887776644 44555555566565556666666666544333

>PRK11043 putative transporter; Provisional

Probab=99.84  E-value=9.1e-18  Score=160.91  Aligned_cols=284  Identities=11%  Similarity=0.153  Sum_probs=171.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+..+..++.++.++++++..+++.|+++|++.+... ....++.|+.|+++|++..+..+....+|..++
T Consensus        67 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  146 (401)
T PRK11043         67 RYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALA  146 (401)
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999887643 344577899999999999888888888899999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCccc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  159 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (408)
                      +.++..+.+..+||+.|++.++..++..+..++++|+++.    ++.++.+                             
T Consensus       147 ~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----------------------------  193 (401)
T PRK11043        147 PLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKA----RKQSQDA-----------------------------  193 (401)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cccchHH-----------------------------
Confidence            9988888788899999999888777665555556665420    0000000                             


Q ss_pred             ccCCCCCccccccccccccccccccchhhhc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015377          160 EFSTSEETPLLSSARKRTTVRKSGFSSFLML-FSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  238 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (408)
                                               ..++.. .+++.+.....    .......++....+.|.+....+          
T Consensus       194 -------------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~g----------  234 (401)
T PRK11043        194 -------------------------LTFKQLLKSKTYLGNVLI----FAACSAAFFAWLTGSPFILEQMG----------  234 (401)
T ss_pred             -------------------------HHHHHHHcChhHHHHHHH----HHHHHHHHHHHHHHhHHHHHHcC----------
Confidence                                     001111 12222221111    11111222222223333221110          


Q ss_pred             CccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH---HHh-hhhhHH-HHHHHHHHHHHhhhh
Q 015377          239 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP---LVT-LQSNIL-LTALLSGARMFSMGT  313 (408)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~---~~~-~~~~~~-~~~~~~~~~~~~~~~  313 (408)
                       .+............+..++|.++.+++.||+++|+..........+....   ... ..+... .........+.....
T Consensus       235 -~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (401)
T PRK11043        235 -YSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAI  313 (401)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence             11111112222334566778888999999999988664433332222111   111 111111 111111111222233


Q ss_pred             hhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 015377          314 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  358 (408)
Q Consensus       314 ~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~  358 (408)
                      ++.......|..|. .|+++.|+.+.++..++..++.+.+.+.+.
T Consensus       314 ~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        314 YPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            34445555677774 699999999999888888888888777653

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.84  E-value=6.7e-19  Score=171.18  Aligned_cols=328  Identities=12%  Similarity=0.071  Sum_probs=181.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLI-LRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVS   78 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l   78 (408)
                      |.|||+.++++.++..++.++++++++++.+++ .|++.|++.|.. .....++.|+.| ++|++..++.+.+..+|..+
T Consensus        80 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~  158 (455)
T TIGR00892        80 RFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLST  158 (455)
T ss_pred             HcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHH
Confidence            579999999999999999999999999998875 579999998864 344556778886 78999999999999999999


Q ss_pred             HHHHHhHhccccchHHHHHHhhHHHHHHHHHHHh-ccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCc
Q 015377           79 EAALAWIVMPILTWRWLLALSAIPAFVLLIFIVF-MPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  157 (408)
Q Consensus        79 ~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~-lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  157 (408)
                      ++++...+.+..+||+.|++.++..++..+..++ .|+.+..-  +.+. +.+         ++.  +     .+    .
T Consensus       159 ~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~-~~~---------~~~--~-----~~----~  215 (455)
T TIGR00892       159 LAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQR--VSKS-KSK---------EGL--P-----PD----G  215 (455)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccc--cccc-ccc---------ccC--C-----CC----C
Confidence            9988887777889999999998876654433333 33322100  0000 000         000  0     00    0


Q ss_pred             ccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 015377          158 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  237 (408)
                      ..  ++.+..       ...+. ..+...+..+.+++++.    .....+...+.++....+.+....+.          
T Consensus       216 ~~--~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~~~----------  271 (455)
T TIGR00892       216 ST--KKLSKK-------STAEK-INRFLDFSLFTHRGFLV----YLSGNVIMFLGFFAPIIFLVPYAKDK----------  271 (455)
T ss_pred             cc--cccccc-------chhhh-hhhhcchHHhcCchHHH----HHHHHHHHHHHccchHHHHHHHHHHc----------
Confidence            00  000000       00000 00000111122222221    11112222223333333333222111          


Q ss_pred             cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhh--chHHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 015377          238 ENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTI--MFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGT  313 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                       ............+.++..+++.+++++++||.  ++|+....  +.+..++..+......+............+.....
T Consensus       272 -g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~  350 (455)
T TIGR00892       272 -GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSV  350 (455)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchH
Confidence             01111222233344566777888899999973  33433322  22222222222222222222222222222222233


Q ss_pred             hhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHH
Q 015377          314 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVV  377 (408)
Q Consensus       314 ~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~  377 (408)
                      .+..+.+..|.+|.+.|+++.|+.+....+|++++|.+.+.+.+..+ ....+.+.+++.+++.+
T Consensus       351 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       351 GALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            45567778899999999999999999999999999999887776553 33455555555444444

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.84  E-value=4.5e-19  Score=169.98  Aligned_cols=327  Identities=19%  Similarity=0.288  Sum_probs=205.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFS--PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   77 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   77 (408)
                      |+|-|+++..+.++.++.++++=++  .++..+++.|+++|++.|.. ++.....+.|+|++||++..++...+..+|.+
T Consensus        99 k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v  178 (466)
T KOG2532|consen   99 KFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTI  178 (466)
T ss_pred             HcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999988555  44557899999999999986 45566788999999999999999999999999


Q ss_pred             HHHHHHhHhccc-cchHHHHHHhhHHHHHHHHH-HHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCC
Q 015377           78 SEAALAWIVMPI-LTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTN  155 (408)
Q Consensus        78 l~~~l~~~~~~~-~~Wr~~f~i~~i~~~~~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~  155 (408)
                      ++-+++..+-+. .||++.|++.++.+++..+. +++..|+|+-   +.+..+.|  ++++.+....+            
T Consensus       179 ~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~is~~E--l~~I~~~k~~~------------  241 (466)
T KOG2532|consen  179 ITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPNISEKE--LKYIEKGKSEA------------  241 (466)
T ss_pred             HHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---CCCCCHHH--HHHHHhccccc------------
Confidence            999888887766 89999999999988887554 4566788862   22222222  22222110000            


Q ss_pred             CcccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015377          156 DLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  234 (408)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  234 (408)
                               +          .++..+   ..++.++ +++.|    ..|+..++....++.+..+.|....+.       
T Consensus       242 ---------~----------~~~~~~---vP~~~i~ts~~vw----ai~~~~f~~~~~~~~l~~y~PtY~~~V-------  288 (466)
T KOG2532|consen  242 ---------H----------VKKKPP---VPYKAILTSPPVW----AIWISAFGGNWGFYLLLTYLPTYLKEV-------  288 (466)
T ss_pred             ---------c----------cCCCCC---CCHHHHHcCHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHH-------
Confidence                     0          000001   1223333 23322    345555666666666666665443211       


Q ss_pred             ccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchH--------HHH-HHHHHHHHHHHHHHHhhhh-hH-HHHHHH
Q 015377          235 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK--------LSM-TIMFIFVCIFLLPLVTLQS-NI-LLTALL  303 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR--------~~~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~~  303 (408)
                         .+.+.........+..+...+..+++|.++||+.+|        +.+ .++....+++++.+.+... .. ..+.++
T Consensus       289 ---L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l  365 (466)
T KOG2532|consen  289 ---LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILL  365 (466)
T ss_pred             ---hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHH
Confidence               111122223445566677788889999999998553        222 3344444555555544332 22 232222


Q ss_pred             HHHHHHhhhhhhhhhhhccccc-CCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhh---cchhhHHHHHHHHHHHHHHHH
Q 015377          304 SGARMFSMGTFIIANIFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS---CHQTAAILLLEALIVLSVVVI  379 (408)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~el~-p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~---~~~~~~~~~~~~~~~i~~~~~  379 (408)
                      ... ....+. .....+..-.- -++.-+...|+++.++.+.++++|.+.+.+...   ..+...|++.+++.+++.++.
T Consensus       366 ~~~-~~~~g~-~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f  443 (466)
T KOG2532|consen  366 TIA-IGLSGF-NISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIF  443 (466)
T ss_pred             HHH-HHHccc-chhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchhe
Confidence            222 222232 33333333333 567789999999999999999999999877631   123455667777777776554


Q ss_pred             Hhc
Q 015377          380 LLI  382 (408)
Q Consensus       380 ~~~  382 (408)
                      .++
T Consensus       444 ~~f  446 (466)
T KOG2532|consen  444 LFF  446 (466)
T ss_pred             eEe
Confidence            444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.84  E-value=1.5e-18  Score=158.27  Aligned_cols=311  Identities=20%  Similarity=0.193  Sum_probs=202.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYI---SLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   77 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   77 (408)
                      |+|.|+...++.++..+-.+..+++.+++   ++++.+++.|++-|...+..++.++++||+++|.+++++. .-++|..
T Consensus        75 rfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~a  153 (417)
T COG2223          75 RFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVA  153 (417)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHH
Confidence            57999999999999999999999887666   9999999999998877777888999999999999999998 7777887


Q ss_pred             HHHHHHhHhccccc---hHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377           78 SEAALAWIVMPILT---WRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  153 (408)
Q Consensus        78 l~~~l~~~~~~~~~---Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  153 (408)
                      +...++-.+....+   ||....+-.++.++. +..++.+.|.|+...+++...+                         
T Consensus       154 v~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~-------------------------  208 (417)
T COG2223         154 VAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP-------------------------  208 (417)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch-------------------------
Confidence            77776666555556   999888877776664 4556667666653100000000                         


Q ss_pred             CCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 015377          154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS  233 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  233 (408)
                                                     .+++..++   .++++.+...|+...-.+-++..+.|.+..++-     
T Consensus       209 -------------------------------~~~~~v~~---~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~f-----  249 (417)
T COG2223         209 -------------------------------AQLKAVFS---NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQF-----  249 (417)
T ss_pred             -------------------------------hHHHHHhc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence                                           01111111   122334555555555555566666665543210     


Q ss_pred             cccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHH
Q 015377          234 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-------SNILLTALLSGA  306 (408)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  306 (408)
                         ..+..+.  ....+...+.+...-.++|+++||+|.|+.+.......+++........       +........+..
T Consensus       250 ---g~~~~~A--g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l  324 (417)
T COG2223         250 ---GLSPVTA--GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLAL  324 (417)
T ss_pred             ---CCChhhH--HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHH
Confidence               0111111  1233344455566678899999999888877665555555444333221       112222222222


Q ss_pred             HHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHHhc
Q 015377          307 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~  382 (408)
                      ..+....+...+-..+.+||.+ -+...|+..++|.+|++.-|...+...+.++ ....+.++..+.+++.+.....
T Consensus       325 ~~~~G~GnGsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~  400 (417)
T COG2223         325 FVFAGLGNGSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL  400 (417)
T ss_pred             HHHhccCcchheeechHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333334456778888889874 6888999999999999999999988877776 3456666666666666654444

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.82  E-value=1.4e-17  Score=180.22  Aligned_cols=323  Identities=14%  Similarity=0.018  Sum_probs=182.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      |.|||++++.+.++..++.++.   ..+++++.++++|+++|++.|.. ++...++.|++|+++|++++++.+.+..+|.
T Consensus        73 r~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~  152 (1146)
T PRK08633         73 KFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAI  152 (1146)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHH
Confidence            5799999999887766555443   44578999999999999998875 4556789999999999999999999999999


Q ss_pred             HHHHHHHhHhccc---------cchHHHHHHhhHH-HHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCC
Q 015377           77 VSEAALAWIVMPI---------LTWRWLLALSAIP-AFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPS  146 (408)
Q Consensus        77 ~l~~~l~~~~~~~---------~~Wr~~f~i~~i~-~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~  146 (408)
                      +++++++..+...         .+|++.+.+..+. .++.++..+.+||+|+....++                      
T Consensus       153 ~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------  210 (1146)
T PRK08633        153 LAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF----------------------  210 (1146)
T ss_pred             HHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc----------------------
Confidence            9999998876544         3455555554443 3334455667788875311000                      


Q ss_pred             CCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhc
Q 015377          147 GNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTIL-LWVLYFGNSFVYYGIVLLASELSG  225 (408)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~  225 (408)
                                  ++.   +... .          +.....++.+++.+......+ ..+.++....    ...+.+....
T Consensus       211 ------------~~~---~~~~-~----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  260 (1146)
T PRK08633        211 ------------DKK---KYLF-P----------KLLWRNLKLLRSDRVLWLAIIGLSYFWFISQL----AQANFPAYAK  260 (1146)
T ss_pred             ------------ccc---cccc-H----------HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH----HHHhhHHHHH
Confidence                        000   0000 0          000011222333222222211 1111111111    1111111110


Q ss_pred             cCCCCCcccccccCccch-hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 015377          226 SQSKCSSSILLSENVQDA-SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLS  304 (408)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (408)
                      ..          ...... ..........++.++|.++.+++.||.++|..+.++.+..++.++.+....+........+
T Consensus       261 ~~----------~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (1146)
T PRK08633        261 EV----------LGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFF  330 (1146)
T ss_pred             HH----------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            00          001111 1222333445677889999999999999888776665554444433333222222222222


Q ss_pred             HHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHHhcc
Q 015377          305 GARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~  383 (408)
                      ...++..........+..|..|.+.|+++.|+.+.+..+++++++.+...+... .+....+.+.+.++++..+..+...
T Consensus       331 ~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (1146)
T PRK08633        331 LFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLL  410 (1146)
T ss_pred             HHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222222233345677888999999999999999999998887776665433321 1222334444444444444444433


Q ss_pred             cc
Q 015377          384 FE  385 (408)
Q Consensus       384 ~e  385 (408)
                      |+
T Consensus       411 ~~  412 (1146)
T PRK08633        411 PD  412 (1146)
T ss_pred             HH
Confidence            43

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.82  E-value=5.6e-17  Score=155.79  Aligned_cols=118  Identities=19%  Similarity=0.277  Sum_probs=101.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||++++.+.+++.++++++++++|++.++++|+++|++.+... ....+..|+.|+++|++.++..+....+|..++
T Consensus        77 r~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  156 (413)
T PRK15403         77 RIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIG  156 (413)
T ss_pred             HcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999887543 345567899999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCcch
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPR  118 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~  118 (408)
                      +.++..+.+..+||+.|++.++..++..+ ..+++||+++
T Consensus       157 ~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        157 PLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99988887778999999999887766544 3556788753

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.82  E-value=3.5e-17  Score=155.73  Aligned_cols=301  Identities=16%  Similarity=0.117  Sum_probs=174.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+.++..++.++.++++|++.+++.|+++|++.|.. ++...++.|..|+++||+.++.++....+|..++
T Consensus        67 r~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  146 (381)
T PRK03633         67 RIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLG  146 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999999999999999999998875 3445566788999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCccc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDE  159 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (408)
                      +.+...+.+...|+..+....+...+..+.....+|++.                                     + ++
T Consensus       147 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~-~~  188 (381)
T PRK03633        147 QLLVSKVSTELMSVLPWVTGLVLAAILPLLFTRILNQQA-------------------------------------E-NH  188 (381)
T ss_pred             HHHHhcccccccchHHHHHHHHHHHHHHHHHhcccCCCC-------------------------------------C-CC
Confidence            998877654433333222211111111111111111100                                     0 00


Q ss_pred             ccCCCCCccccccccccccccccccchhhh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015377          160 EFSTSEETPLLSSARKRTTVRKSGFSSFLM-LFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  238 (408)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (408)
                           +.+                  +... +.+++.+. .....+..   ...+.....+.|....+.           
T Consensus       189 -----~~~------------------~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~lp~~~~~~-----------  230 (381)
T PRK03633        189 -----DST------------------SIWPMLKLRQARL-GVNGCIIS---GIVLGSLYGLMPLYLNHQ-----------  230 (381)
T ss_pred             -----CCC------------------CHHHHHHhcchHH-HHHHHHHH---HHHHHHHHHHHHHHHHHc-----------
Confidence                 000                  0000 11122221 11111111   111111112223222111           


Q ss_pred             CccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 015377          239 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIAN  318 (408)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                      +.+............+..+++.+..+++.||+|||+.+..+.....+....+. .. .......... ........+...
T Consensus       231 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~l~-g~~~~~~~p~~~  307 (381)
T PRK03633        231 GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQ-AAMAPALFIL-GAAGFTLYPVAM  307 (381)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh-HHHHHHHHHH-HHHHHhHHHHHH
Confidence            01111122223344567788999999999999999988765555444332222 11 1111111111 111123345566


Q ss_pred             hhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 015377          319 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVIL  380 (408)
Q Consensus       319 ~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  380 (408)
                      .+..|..|.+.++.+.+..+....+|+.++|.+.+.+.+..+....|.+.+.+.++..+..+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence            66789998887777777777777899999999999888877666667776666665544433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.82  E-value=2.8e-18  Score=162.27  Aligned_cols=118  Identities=19%  Similarity=0.270  Sum_probs=91.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.++++.++..++.++.++++ ++..+++.|+++|++.+.......+++|+.|+++|++..++......+|..++
T Consensus        63 r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  142 (366)
T TIGR00886        63 KFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVA  142 (366)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHH
Confidence            57999999999999999999999999 99999999999999865444556678999999999999999887777777776


Q ss_pred             HHHHhHhcc----------ccchHHHHH-HhhHHH-HHHHHHHHhccCcch
Q 015377           80 AALAWIVMP----------ILTWRWLLA-LSAIPA-FVLLIFIVFMPESPR  118 (408)
Q Consensus        80 ~~l~~~~~~----------~~~Wr~~f~-i~~i~~-~~~~~~~~~lpESp~  118 (408)
                      +.++..+..          ..+||+.|+ ..++.. ++..+.....+|+|+
T Consensus       143 ~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (366)
T TIGR00886       143 QFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPP  193 (366)
T ss_pred             HHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCc
Confidence            666544321          348999994 434433 333445556677764

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.81  E-value=4.5e-17  Score=155.81  Aligned_cols=114  Identities=17%  Similarity=0.134  Sum_probs=96.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+.++..++.++.+++++++.+++.|++.|++.+.. +....++.|..|+++|++..++.+....+|..++
T Consensus        72 r~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig  151 (400)
T PRK11646         72 RFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIG  151 (400)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999999987654 4456678899999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHH-HHHHhccC
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPE  115 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~-~~~~~lpE  115 (408)
                      +.++..+. .++||+.|++.++..++.. +..++.||
T Consensus       152 ~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        152 ALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             HHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            99988777 6799999999877655543 33445554

>TIGR00901 2A0125 AmpG-related permease

Probab=99.81  E-value=1.6e-17  Score=156.65  Aligned_cols=277  Identities=11%  Similarity=0.082  Sum_probs=160.5

Q ss_pred             CcchhHH-HHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            2 EEGRMSI-LGGALVTFVAGLLSAFS---PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         2 ~gRr~~~-~~~~~~~~~~~~~~~~~---~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      .||||.+ +.+.+..++...+.++.   .++..+....++.|++.+.. +....++.|++|+++|++..++...+..+|.
T Consensus        53 ~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~  132 (356)
T TIGR00901        53 FGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGM  132 (356)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHH
Confidence            5999974 56677777776677777   45555666676777555443 4556688999999999999999999999999


Q ss_pred             HHHHHHHhHhccccc--------hHHHHHHhhHHHHHHHHHHH-hccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCC
Q 015377           77 VSEAALAWIVMPILT--------WRWLLALSAIPAFVLLIFIV-FMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSG  147 (408)
Q Consensus        77 ~l~~~l~~~~~~~~~--------Wr~~f~i~~i~~~~~~~~~~-~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~  147 (408)
                      ++++.++..+.+..+        ||..|++.++..++..+..+ ..||+++..   .+.++..+                
T Consensus       133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~---~~~~~~~~----------------  193 (356)
T TIGR00901       133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDA---SVPKPLTQ----------------  193 (356)
T ss_pred             HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCccc---ccchhHHH----------------
Confidence            999999877766666        99999999887766555544 356643210   00000000                


Q ss_pred             CccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 015377          148 NLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQ  227 (408)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  227 (408)
                                                  +   .+   ..++.+++++..+.........+.....++....+.+....+.
T Consensus       194 ----------------------------~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  239 (356)
T TIGR00901       194 ----------------------------A---VL---KPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDM  239 (356)
T ss_pred             ----------------------------H---HH---HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                                        0   00   0111222222111122222222223333444333333222111


Q ss_pred             CCCCcccccccCccchhHH-HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--h--------hh
Q 015377          228 SKCSSSILLSENVQDASVY-INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--Q--------SN  296 (408)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~--~--------~~  296 (408)
                                 +.+..... .......+..++|.++++++.||+|||+.+..+.++..+........  .        +.
T Consensus       240 -----------g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (356)
T TIGR00901       240 -----------GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPH  308 (356)
T ss_pred             -----------CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence                       01111111 12222335567899999999999999988877666554433322221  1        11


Q ss_pred             -HHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhh
Q 015377          297 -ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGR  342 (408)
Q Consensus       297 -~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~  342 (408)
                       .......+...+.....++....+..|.+|++.|++..|+.+....
T Consensus       309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence             1111112222233334456778899999999999999999887653

>PRK10133 L-fucose transporter; Provisional

Probab=99.80  E-value=1.3e-16  Score=154.25  Aligned_cols=300  Identities=14%  Similarity=0.062  Sum_probs=170.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      |.|||+++..+.+++.++.+++   ++++++..++++|+++|+|.|.. .....++.|+.|+++|++.++..+..+.+|.
T Consensus        87 r~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~  166 (438)
T PRK10133         87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA  166 (438)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHH
Confidence            5799999999999999999775   57899999999999999999876 4556677888878877778999999999999


Q ss_pred             HHHHHHHhHhc-c-----------------c--------cchHHHHHHh-hHHHHHHHH-HHHhccCcchhHhhcCChhh
Q 015377           77 VSEAALAWIVM-P-----------------I--------LTWRWLLALS-AIPAFVLLI-FIVFMPESPRYLCTKGRITD  128 (408)
Q Consensus        77 ~l~~~l~~~~~-~-----------------~--------~~Wr~~f~i~-~i~~~~~~~-~~~~lpESp~~l~~~~~~~~  128 (408)
                      .+++.++..+. .                 .        .+||++|+.. .+..++.++ ....+||.|.     ++.  
T Consensus       167 ~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~-----~~~--  239 (438)
T PRK10133        167 IIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS-----DNH--  239 (438)
T ss_pred             HHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----ccc--
Confidence            99988765432 0                 0        2566677543 333323222 2333444211     000  


Q ss_pred             HHHHHHHHHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHH
Q 015377          129 AHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYF  207 (408)
Q Consensus       129 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  207 (408)
                                                   ++  +  ++..              .....+.++ +|+.+...+ ..+.+.
T Consensus       240 -----------------------------~~--~--~~~~--------------~~~~~~~ll~~~~~~~~~l-~~~~~~  271 (438)
T PRK10133        240 -----------------------------SD--A--KQGS--------------FSASLSRLARIRHWRWAVL-AQFCYV  271 (438)
T ss_pred             -----------------------------cc--c--cccc--------------hhhhHHHHHhCchHHHHHH-HHHHHH
Confidence                                         00  0  0000              000111122 223222221 111111


Q ss_pred             HHHHHHHHHHHHHH-hhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 015377          208 GNSFVYYGIVLLAS-ELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIF  286 (408)
Q Consensus       208 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~  286 (408)
                         ...++...|.+ .+..+.          ................++.++|.++++++.||+|||+.+..+..+....
T Consensus       272 ---~~~~~~~~~~~~~l~~~~----------~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~  338 (438)
T PRK10133        272 ---GAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL  338 (438)
T ss_pred             ---HHHHHHHHHHHHHHhhhc----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence               11111111222 111100          0111112222334445677889999999999999999887766555443


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHH
Q 015377          287 LLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAI  365 (408)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~  365 (408)
                      +.......+. .....+....++....++..+....|.+|.+ .+++.++.. ...+|+.+.|.+.+.+.+..+ ....+
T Consensus       339 ~~~~~~~~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~  415 (438)
T PRK10133        339 CLISAFAGGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAE  415 (438)
T ss_pred             HHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHH
Confidence            3332222222 2222223333444455678888888888775 566777765 344677788888887766654 33445


Q ss_pred             HHHHHH
Q 015377          366 LLLEAL  371 (408)
Q Consensus       366 ~~~~~~  371 (408)
                      ++...+
T Consensus       416 ~v~~~~  421 (438)
T PRK10133        416 LIPALC  421 (438)
T ss_pred             HHHHHH
Confidence            443333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.80  E-value=4.9e-16  Score=148.96  Aligned_cols=314  Identities=16%  Similarity=0.104  Sum_probs=174.2

Q ss_pred             cchh-HHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHH
Q 015377            3 EGRM-SILGGALVTFVAGLLSAFS---PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   77 (408)
Q Consensus         3 gRr~-~~~~~~~~~~~~~~~~~~~---~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   77 (408)
                      |||| .+.++.+...++..+.++.   .+++.+.+..++.|+..+.. +...++..|+.|+++|++..++...+..+|.+
T Consensus        65 g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i  144 (402)
T PRK11902         65 GRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAML  144 (402)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHH
Confidence            7776 6777777777777666776   35677788877777554443 45567889999999999999999999999999


Q ss_pred             HHHHHHhHhccc-cchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCC
Q 015377           78 SEAALAWIVMPI-LTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTND  156 (408)
Q Consensus        78 l~~~l~~~~~~~-~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  156 (408)
                      +++.+...+.+. .+||..|++.++..++..+..++.||+++..   ++.++..+                         
T Consensus       145 ~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~~-------------------------  196 (402)
T PRK11902        145 VSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSLGE-------------------------  196 (402)
T ss_pred             HHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchhHH-------------------------
Confidence            999888777664 5999999998877666555566778765410   00000000                         


Q ss_pred             cccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 015377          157 LDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLY-FGNSFVYYGIVLLASELSGSQSKCSSSIL  235 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  235 (408)
                                 ..           +   ..++.+++++..+..+.....+ ..... ++..  ..+.+....        
T Consensus       197 -----------~~-----------~---~~~~~l~~~~~~~~~l~~~~l~~~~~~~-~~~~--~~~~l~~~~--------  240 (402)
T PRK11902        197 -----------AV-----------V---GPLRDFFSRRGAWALLLLIVLYKLGDAF-AGSL--STTFLIRGA--------  240 (402)
T ss_pred             -----------HH-----------H---HHHHHHHhCcCHHHHHHHHHHHHhHHHH-HHHH--HHHHHHHhc--------
Confidence                       00           0   0111222222222222222221 11111 1111  111111100        


Q ss_pred             cccCccchhHHHHH-HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---Hhh-hhhHHHHHHHHH----H
Q 015377          236 LSENVQDASVYINV-FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTL-QSNILLTALLSG----A  306 (408)
Q Consensus       236 ~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~----~  306 (408)
                         +.+........ .......++|.++++++.||+|||+.+..+.....+....+   ... .+..........    .
T Consensus       241 ---G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (402)
T PRK11902        241 ---GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCG  317 (402)
T ss_pred             ---CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence               01111111111 22234578899999999999999887765544433322211   122 222222111111    1


Q ss_pred             HHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          307 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      .+...........++.+.+|.+.+    ++.+.+..++++..+.+.+.+.+..+....|.+.+.+++++.++....++..
T Consensus       318 g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~~~  393 (402)
T PRK11902        318 GMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRGTI  393 (402)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            111122234455566777775544    4444444555554555667777777766667777777777777766665443


Q ss_pred             C
Q 015377          387 K  387 (408)
Q Consensus       387 ~  387 (408)
                      +
T Consensus       394 ~  394 (402)
T PRK11902        394 G  394 (402)
T ss_pred             c
Confidence            3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.80  E-value=1.3e-16  Score=152.95  Aligned_cols=285  Identities=15%  Similarity=0.124  Sum_probs=176.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAF---SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      |.|||+++..+.++++++.++...   .+++..+++.|++.|+|.|.. ....++..|..|+++|++.+++.+.+..+|.
T Consensus        64 r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~  143 (410)
T TIGR00885        64 KLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGS  143 (410)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHH
Confidence            579999999999999998877543   468999999999999999876 4566788899999999999999999999999


Q ss_pred             HHHHHHHhHhcc--------------------------ccchHHHHHHhhHHHHHHHHHHHh--ccCcchhHhhcCChhh
Q 015377           77 VSEAALAWIVMP--------------------------ILTWRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITD  128 (408)
Q Consensus        77 ~l~~~l~~~~~~--------------------------~~~Wr~~f~i~~i~~~~~~~~~~~--lpESp~~l~~~~~~~~  128 (408)
                      .+++.+...+..                          ..+||++|.+.++..++..+...+  +||.++        ++
T Consensus       144 ~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~~  215 (410)
T TIGR00885       144 IIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------SD  215 (410)
T ss_pred             HHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------cc
Confidence            999988765421                          136999999887766554333322  333111        00


Q ss_pred             HHHHHHHHHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHH
Q 015377          129 AHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYF  207 (408)
Q Consensus       129 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  207 (408)
                                                   +++  + +..                 ...+..+ +++.+. ..+..+.+.
T Consensus       216 -----------------------------~~~--~-~~~-----------------~~~~~~~~~~~~~~-~~l~~f~yv  245 (410)
T TIGR00885       216 -----------------------------AKQ--I-SFS-----------------ASLSRLARIRHYRE-GVIAQFFYV  245 (410)
T ss_pred             -----------------------------ccc--c-cch-----------------hhHHHHHhChhHHH-HHHHHHHHH
Confidence                                         000  0 000                 0000111 122222 222222233


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHH
Q 015377          208 GNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFL  287 (408)
Q Consensus       208 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~  287 (408)
                      +.....+   .+.+....+...       ....+....+....  .....+|.++++++.||+++|+.+..+...+.+.+
T Consensus       246 g~e~~~~---s~l~~y~~~~~~-------~~~~~~a~~~~~~~--~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~  313 (410)
T TIGR00885       246 GVQIMCW---TFIIQYAVRLIP-------GMTAGFAANYNIGA--MVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALC  313 (410)
T ss_pred             HHHHHHH---HHHHHHHhhccC-------CCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            2222222   111111110000       00011111122222  24457899999999999999998877766666555


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 015377          288 LPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  358 (408)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~  358 (408)
                      +......+... ...+....++....++..+....+..+.+.+..+.++++++  +|+.+.|.+.+.+.|.
T Consensus       314 ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~  381 (410)
T TIGR00885       314 LGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM  381 (410)
T ss_pred             HHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence            44444333222 22333333444566788899999999998887788888876  8999999999988874

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10054 putative transporter; Provisional

Probab=99.79  E-value=8.3e-17  Score=153.74  Aligned_cols=308  Identities=12%  Similarity=0.090  Sum_probs=178.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||++++++.+...++.++.+++++++.++++|++.|.+.+.. +....++.|..|+++|++..++.+....+|..++
T Consensus        69 r~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~ig  148 (395)
T PRK10054         69 KFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVG  148 (395)
T ss_pred             hcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999988888888899999999999999988765543 3456788999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHH-HHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLL-IFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~-~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      +.++..+.. .+||..|++.++..++.. +..+++||+++    +++ ++..                            
T Consensus       149 p~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~----~~~-~~~~----------------------------  194 (395)
T PRK10054        149 PPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEK----AIA-TETG----------------------------  194 (395)
T ss_pred             HHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhcccc----ccc-cchh----------------------------
Confidence            998887654 689999998877666553 33444565432    000 0000                            


Q ss_pred             cccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (408)
                      +     +    .     +         ....+.+++.+.-.....+..+...........+.+... +           .
T Consensus       195 ~-----~----~-----~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-----------~  239 (395)
T PRK10054        195 S-----V----W-----S---------PSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVA-D-----------S  239 (395)
T ss_pred             h-----h----h-----h---------hhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhc-c-----------c
Confidence            0     0    0     0         000011122211111111111111100001111111110 0           0


Q ss_pred             CccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHhhhhhhhh
Q 015377          239 NVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNIL-LTALLSGARMFSMGTFIIA  317 (408)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  317 (408)
                      ..............+...++.....+.+.||.++|+.+..+.....+....+....++.. ................+..
T Consensus       240 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~  319 (395)
T PRK10054        240 DFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGE  319 (395)
T ss_pred             chHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhH
Confidence            011111111222223344455567788999999999887765544443333322222221 1111111222212223455


Q ss_pred             hhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Q 015377          318 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVV  378 (408)
Q Consensus       318 ~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  378 (408)
                      .....|..|++.|+++.+..+ .+++|..++|.+.+.+.+..+....+.+++.+..+..+.
T Consensus       320 ~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        320 YMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL  379 (395)
T ss_pred             HHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence            667789999999999998654 677899999999998888776544555554444444333

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.78  E-value=8.6e-16  Score=146.87  Aligned_cols=118  Identities=14%  Similarity=0.181  Sum_probs=99.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+..+..++.+...+++++..+++.|++.|++.+... ....+..|..++++|++..+..+.+..+|..++
T Consensus        69 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (394)
T PRK11652         69 RVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLA  148 (394)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999887653 334566789999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcch
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPR  118 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~  118 (408)
                      +.++..+.+..+||+.|++.++..++. .+..++.||+|+
T Consensus       149 ~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        149 PLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            998888777789999999987766554 344566788653

>TIGR00889 2A0110 nucleoside transporter

Probab=99.77  E-value=7.7e-16  Score=148.02  Aligned_cols=324  Identities=12%  Similarity=0.052  Sum_probs=174.6

Q ss_pred             Cc-chhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhh----HHHh----hhcCCCcchhHHHHHHHH
Q 015377            2 EE-GRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFF----SWFM----EFVPPSNRGKWMVVFSTF   71 (408)
Q Consensus         2 ~g-Rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~----~~~~----E~~p~~~Rg~~~~~~~~~   71 (408)
                      .| ||+.+.++.+...++..+..+.+++..+.+.|++.|++.+.. +...    .+..    |......|.+..+     
T Consensus        65 ~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G-----  139 (418)
T TIGR00889        65 WLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG-----  139 (418)
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh-----
Confidence            44 477888888888888888888999999999999999876543 2221    2332    3333334555444     


Q ss_pred             HHHHHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccC
Q 015377           72 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTS  151 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~  151 (408)
                       .+|.++++.++..+.....|+.. ++.++..++..+..+++||+|+-   +++.++                       
T Consensus       140 -~lG~~ig~~l~g~l~~~~~~~~f-~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~-----------------------  191 (418)
T TIGR00889       140 -TIGFIAAMWAVSLLDIELSNIQL-YITAGSSALLGVFALTLPDIPVA---KSTAKM-----------------------  191 (418)
T ss_pred             -hHHHHHHHHHHHHhcccchhHHH-HHHHHHHHHHHHHHhcCCCCCCC---cccccc-----------------------
Confidence             24666666666555334457654 45554444444456678887640   000000                       


Q ss_pred             CCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 015377          152 DGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCS  231 (408)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  231 (408)
                          +..+      .        .       +......+.+++++.-.....+...... .++  .++.+.+.. .+...
T Consensus       192 ----~~~~------~--------~-------~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~-~g~~~  242 (418)
T TIGR00889       192 ----SIKV------M--------L-------GLDAFILFKNKRMAIFFFFSMLLGAPLQ-ITN--IFGNGFLHE-FGRNP  242 (418)
T ss_pred             ----CHHH------H--------h-------hhhHHHHhcCCCeeeHHHHHHHHHhHHH-HHH--HhHHHHHHH-hcccc
Confidence                0000      0        0       0000001111222111111111111111 111  111111110 00000


Q ss_pred             cccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh-h--HH-HHHHHHHHH
Q 015377          232 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-N--IL-LTALLSGAR  307 (408)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~  307 (408)
                         ....+...........+..+.++++.+..++++||+|||+++..+.+..++.......... .  .. ......+..
T Consensus       243 ---~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g  319 (418)
T TIGR00889       243 ---EFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYG  319 (418)
T ss_pred             ---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence               0000000011223334455677888999999999999999998877766554333332111 1  11 111111111


Q ss_pred             HHhhhhhhhhhhhcccccCCchhhHHHhHHH-HhhhHhHhhHHHHHHHHhhhcc------hhhHHHHHHHHHHHHHHHHH
Q 015377          308 MFSMGTFIIANIFAPEIYPTSMRSTGAGVAY-AVGRIGGMVCPLVAVGLVTSCH------QTAAILLLEALIVLSVVVIL  380 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~-~~~~~~~~~~p~~~~~l~~~~~------~~~~~~~~~~~~~i~~~~~~  380 (408)
                      .......+....+.+|.+|++.|+++.|+.+ ....+|++++|.+.+.+.+..+      +...+.+.+++++++++..+
T Consensus       320 ~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~  399 (418)
T TIGR00889       320 CAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFM  399 (418)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            1111223455677899999999999999997 4567899999999998887643      34567777777778888888


Q ss_pred             hcccccCCcc
Q 015377          381 LIPFETKGKE  390 (408)
Q Consensus       381 ~~~~et~~~~  390 (408)
                      ++.||+++.-
T Consensus       400 ~~~~~~~~~~  409 (418)
T TIGR00889       400 IFFKYSHNAI  409 (418)
T ss_pred             HHhCCcccCC
Confidence            8888887653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.76  E-value=9.6e-19  Score=160.80  Aligned_cols=118  Identities=23%  Similarity=0.343  Sum_probs=103.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |+.||+++..++.+|.++.++++++..|+++.++|.+.|+|.+.. +...+.+++.+|..+|+++++++++..+.|..+|
T Consensus        94 ryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG  173 (493)
T KOG1330|consen   94 RYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLG  173 (493)
T ss_pred             hcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccccee
Confidence            578999999999999999999999999999999999999999875 5677899999999999999999999999999998


Q ss_pred             HHHHhHhccccc-hHHHHHHhhHHHHHHH-HHHHhccCcch
Q 015377           80 AALAWIVMPILT-WRWLLALSAIPAFVLL-IFIVFMPESPR  118 (408)
Q Consensus        80 ~~l~~~~~~~~~-Wr~~f~i~~i~~~~~~-~~~~~lpESp~  118 (408)
                      .+.+..+.+..+ |||.|...++.+++.. +.+++.+|.+|
T Consensus       174 ~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  174 YVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             EEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            887776665444 9999999999888764 45667777544

>TIGR00896 CynX cyanate transporter

Probab=99.76  E-value=7.7e-16  Score=145.07  Aligned_cols=285  Identities=18%  Similarity=0.171  Sum_probs=165.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+.++.+...++.++. ..++...+++.|++.|++.|... ....+..|+.| ++|++..+.++.+..+|..++
T Consensus        61 r~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~  138 (355)
T TIGR00896        61 RFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALA  138 (355)
T ss_pred             HhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHH
Confidence            5799999999998888877777 78899999999999999987643 33445678776 689999999999999999999


Q ss_pred             HHHHhHhcccc--chHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCc
Q 015377           80 AALAWIVMPIL--TWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  157 (408)
Q Consensus        80 ~~l~~~~~~~~--~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  157 (408)
                      +.+...+.+..  +||+.|.+.++..++..  ..++||+++      +.                + +            
T Consensus       139 ~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~~~~~~~------~~----------------~-~------------  181 (355)
T TIGR00896       139 AAATVPLAQHSGGHWQQALAWWALPALLAL--LAWIPQVRR------RV----------------A-A------------  181 (355)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHhhhhcc------cc----------------C-C------------
Confidence            88877665443  49999887665543322  233454321      00                0 0            


Q ss_pred             ccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 015377          158 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS  237 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  237 (408)
                      +++ .  +..               .  ....+.+++.+..    ..........+++...+.|....+.+         
T Consensus       182 ~~~-~--~~~---------------~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~lp~~~~~~g---------  228 (355)
T TIGR00896       182 NQT-T--TRL---------------T--PVRIWRSPLAWQV----TVFFGLQSGLYYSLIGWLPAILISHG---------  228 (355)
T ss_pred             CCC-C--CCC---------------C--CchhhcCHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcC---------
Confidence            000 0  000               0  0001111222211    11222223344444444443332111         


Q ss_pred             cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Q 015377          238 ENVQDASVYINVFITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFII  316 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~-grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (408)
                        .+............++.+++.++.+++.||+ +||..+..+..+..+....+....+..... ...+..+.....++.
T Consensus       229 --~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~  305 (355)
T TIGR00896       229 --ASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPL  305 (355)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHH
Confidence              1111122233344577889999999999999 556555554444433333222222111111 111112222222344


Q ss_pred             hhhhcc-cccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 015377          317 ANIFAP-EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  360 (408)
Q Consensus       317 ~~~~~~-el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~  360 (408)
                      ...... +..+++.+++..++.+.++.+++.++|.+.+.+.+..+
T Consensus       306 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       306 ALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344444 44456778999999999999999999999998877655

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.76  E-value=5.3e-16  Score=167.64  Aligned_cols=293  Identities=9%  Similarity=-0.042  Sum_probs=170.0

Q ss_pred             CCcchhHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILG---GALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      |+|||+++..   ..++..+..+.....+|++.++++|+++|++.+.. ++..+++.|++|+++|++++++.+.+..+|.
T Consensus        78 r~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~  157 (1140)
T PRK06814         78 KYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAI  157 (1140)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHH
Confidence            5799997533   22233333334444589999999999999998865 5667788999999999999999999999999


Q ss_pred             HHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCC
Q 015377           77 VSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTND  156 (408)
Q Consensus        77 ~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~  156 (408)
                      +++++++..+....+||+.|+...+..++.++..+++||++.-   +.+.                              
T Consensus       158 ~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~------------------------------  204 (1140)
T PRK06814        158 LLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA---APDL------------------------------  204 (1140)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC---CCCC------------------------------
Confidence            9999999998888899999965555555555566667765420   0000                              


Q ss_pred             cccccCCCCCccccccccccccccccccchhhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 015377          157 LDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  235 (408)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  235 (408)
                       ..     +.. ..++          ....++...+ +..+...+.....+    +.++....+.|.+....        
T Consensus       205 -~~-----~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~--------  255 (1140)
T PRK06814        205 -KI-----DRN-IIRS----------TITLLKYAKADKRIWLAILGISWFW----LVGAVVLSQLPLLAKET--------  255 (1140)
T ss_pred             -ee-----ccc-hHHH----------HHHHHHHHhcCchHHHHHHHHHHHH----HHHHHHHHHhHHHHHHH--------
Confidence             00     000 0000          0001122222 22222111111111    11222222222221100        


Q ss_pred             cccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--------------------hh
Q 015377          236 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--------------------QS  295 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~--------------------~~  295 (408)
                        .+.............+++.++|.++.++++|+.++++.+..+.++.++..+.+...                    .+
T Consensus       256 --~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  333 (1140)
T PRK06814        256 --LGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH  333 (1140)
T ss_pred             --cCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc
Confidence              00111112223344457778899999999988776655444333333222211111                    11


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhh
Q 015377          296 NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  357 (408)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~  357 (408)
                      .+......+...++..........+..+..|.+.|+++.|+.+.+..++..+++.+.+.+.+
T Consensus       334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~  395 (1140)
T PRK06814        334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA  395 (1140)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12221222222222223334567788999999999999999999999999898888776653

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.75  E-value=1.6e-15  Score=147.05  Aligned_cols=291  Identities=15%  Similarity=0.069  Sum_probs=164.4

Q ss_pred             CCcchh-HHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHhhccCCcch-hhhHHHhhhc-CCCcchhHHHHHHHH
Q 015377            1 MEEGRM-SILGGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGH-VFFSWFMEFV-PPSNRGKWMVVFSTF   71 (408)
Q Consensus         1 ~~gRr~-~~~~~~~~~~~~~~~~~~~~~------~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~-p~~~Rg~~~~~~~~~   71 (408)
                      |.|||| .++.+.....++.++..+.++      ...+++.+++.|++.+... ...++..|.. ++++|++..++.+.+
T Consensus        65 r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~  144 (437)
T TIGR00792        65 RWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFG  144 (437)
T ss_pred             CCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHH
Confidence            468855 566777777777777766654      4567788888888776543 3345667877 568999999998888


Q ss_pred             HHHHHHHHHHHHhHhc-------cccchHHHHHHhhHHHHHHHH-HHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCC
Q 015377           72 WTFGSVSEAALAWIVM-------PILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTS  143 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~~-------~~~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~  143 (408)
                      ..+|.++++.+...+.       +..+||+++.+.++..++..+ ..+..||.++..      +                
T Consensus       145 ~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~------~----------------  202 (437)
T TIGR00792       145 ATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEI------P----------------  202 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCC------C----------------
Confidence            8888877665543322       246899999998887766544 345566643200      0                


Q ss_pred             CCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015377          144 LPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASE  222 (408)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (408)
                                    +++  + ++.+.           +   ..++.+++ ++.+. ..   ...+...+.++....+.+.
T Consensus       203 --------------~~~--~-~~~~~-----------~---~~~~~l~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~  247 (437)
T TIGR00792       203 --------------KNI--E-KKLSL-----------K---QIFKALFKNDQLLI-LC---LAYLFYNLAFNIKNGVQVY  247 (437)
T ss_pred             --------------ccc--c-cCCCH-----------H---HHHHHHhCCHHHHH-HH---HHHHHHHHHHHHHcchhhe
Confidence                          000  0 00000           0   01222222 22222 11   1111122222221111111


Q ss_pred             hhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh-HHHHH
Q 015377          223 LSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN-ILLTA  301 (408)
Q Consensus       223 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  301 (408)
                      ....        .  .. ..........+..+..+++.++.++++||+|||+.+..+..+..+.........++ .....
T Consensus       248 ~~~~--------~--~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (437)
T TIGR00792       248 YFTY--------V--LG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILV  316 (437)
T ss_pred             eEee--------e--cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHH
Confidence            1100        0  00 01111122234467778899999999999999998877766555443333322222 22222


Q ss_pred             HHHHHHHHhhhhhhhhhhhcccccC-------CchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc
Q 015377          302 LLSGARMFSMGTFIIANIFAPEIYP-------TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  359 (408)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~el~p-------~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~  359 (408)
                      ......+......+..+.+.+|..|       .+.++++.|+.+.+.++++.+++.+.+.+.+..
T Consensus       317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~  381 (437)
T TIGR00792       317 LIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            2222222223344667777787765       566799999999999999999999888776643

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.74  E-value=1.6e-15  Score=146.34  Aligned_cols=135  Identities=12%  Similarity=0.085  Sum_probs=88.6

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchh
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  330 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R  330 (408)
                      +..+..+++.++.++++||+|||+.+..+.++.++.........+........................+.+|.+|++.|
T Consensus       270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~  349 (420)
T PRK09528        270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLS  349 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccce
Confidence            33456678999999999999999988776665555433333333333222211111111111123345677899999999


Q ss_pred             hHHHhH-HHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccc
Q 015377          331 STGAGV-AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  385 (408)
Q Consensus       331 ~~a~gi-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e  385 (408)
                      +++.+. .+..+.+|++++|.+.+.+.+..+....+.+.+++.++..++.++..++
T Consensus       350 a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        350 ATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             eeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            998776 4556778999999999988887776677777777777666666655444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.73  E-value=2.2e-14  Score=136.60  Aligned_cols=286  Identities=13%  Similarity=0.021  Sum_probs=164.0

Q ss_pred             HHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhHhccccchHHHHHHh
Q 015377           21 LSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALS   99 (408)
Q Consensus        21 ~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~i~   99 (408)
                      ....+++++.+++.|+++|.+.+.. +....+..|+  +++|++..+......++|.+++++++..+.+..|||+.|++.
T Consensus        87 ~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~  164 (382)
T TIGR00902        87 FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAIL  164 (382)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence            4456789999999999999877654 3444454454  578899999999999999999999988888889999999887


Q ss_pred             hHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccc
Q 015377          100 AIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV  179 (408)
Q Consensus       100 ~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (408)
                      .+...+... .+.++|+++    +++.+                            + ++     +.+            
T Consensus       165 ~~~~~~~~~-~~~~~~~~~----~~~~~----------------------------~-~~-----~~~------------  193 (382)
T TIGR00902       165 TAGLAFMLI-GFLIKPTIP----PKDAI----------------------------P-ED-----ESQ------------  193 (382)
T ss_pred             HHHHHHHHH-HHHcCCCCC----CCccc----------------------------c-cc-----ccc------------
Confidence            654333222 333344321    00000                            0 00     000            


Q ss_pred             cccccchhhhc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhH
Q 015377          180 RKSGFSSFLML-FSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELP  258 (408)
Q Consensus       180 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (408)
                         ..+..... .+|+.+.-.....+.... ...++.   +.+....+.+           ...........+..+.+++
T Consensus       194 ---~~~~~~~~l~~~~~~~~l~~~~l~~~~-~~~~~~---~~~~~l~~~g-----------~s~~~~g~l~~~~~~~~i~  255 (382)
T TIGR00902       194 ---GDSAFIALLKNPMNLRFLAAVCLIQGA-HAAYYG---FSAIYWQAAG-----------ISASATGLLWGIGVLAEII  255 (382)
T ss_pred             ---cchhHHHHHcChHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHCC-----------CCHhHHHHHHHHHHHHHHH
Confidence               00011122 223332222111221111 112221   2221111110           1111122223345677888


Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHH
Q 015377          259 GLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAY  338 (408)
Q Consensus       259 g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~  338 (408)
                      +..+.+.+.||+|+|+.+..+.....+........++..........-.+......+....+..+. |.+.|+++.++.+
T Consensus       256 ~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~  334 (382)
T TIGR00902       256 IFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYN  334 (382)
T ss_pred             HHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHH
Confidence            899999999999999998887777666554444433322222111111111122234445566677 9999999999976


Q ss_pred             Hh-hhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHH
Q 015377          339 AV-GRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVI  379 (408)
Q Consensus       339 ~~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~  379 (408)
                      .. ..+|..++|.+.+.+.+..+. ..|.+.+.+.+++.+..
T Consensus       335 ~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       335 ALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence            54 457888899999988887653 55777777776665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.72  E-value=8.1e-15  Score=140.26  Aligned_cols=318  Identities=12%  Similarity=0.068  Sum_probs=168.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHH---hhh-----hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLS---AFS-----PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTF   71 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~---~~~-----~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~   71 (408)
                      |.|||+.++.+.....+.....   .+.     +.+..+++.|++.|++.+.. +....+..|..+  +++...+.....
T Consensus        64 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~  141 (396)
T TIGR00882        64 KLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMF  141 (396)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhh
Confidence            5799999988766665433221   112     22345677788888887764 334445555433  334455566666


Q ss_pred             HHHHHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHH-hccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCcc
Q 015377           72 WTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV-FMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLT  150 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~-~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~  150 (408)
                      ..+|..+++.++..+.+ .+||++|++.++..++..+..+ ..||+|+.       ++..+        +          
T Consensus       142 ~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~--------~----------  195 (396)
T TIGR00882       142 GCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVAN--------A----------  195 (396)
T ss_pred             cccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhc--------c----------
Confidence            67888888887765543 5999999998877666544433 34554321       00000        0          


Q ss_pred             CCCCCCcccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCC
Q 015377          151 SDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNS-FVYYGIVLLASELSGSQS  228 (408)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~  228 (408)
                            .+.   +.++.               ..++..+++ +++.+.-............ ...+ ...+.......  
T Consensus       196 ------~~~---~~~~~---------------~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~y~~~~~~~--  248 (396)
T TIGR00882       196 ------LGA---NASAF---------------SLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQ-FANFFTSFFAT--  248 (396)
T ss_pred             ------ccc---ccCCC---------------CHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccc--
Confidence                  000   00000               000111222 2222221111111111110 1011 11111111100  


Q ss_pred             CCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 015377          229 KCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARM  308 (408)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
                               .............+..+...++....+++.||+|||+.+..+..+.++.........+.............
T Consensus       249 ---------~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~  319 (396)
T TIGR00882       249 ---------PQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAF  319 (396)
T ss_pred             ---------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence                     00111111222334456677788999999999999998877666555533332333332222221111111


Q ss_pred             HhhhhhhhhhhhcccccCCchhhHHHhH-HHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 015377          309 FSMGTFIIANIFAPEIYPTSMRSTGAGV-AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       309 ~~~~~~~~~~~~~~el~p~~~R~~a~gi-~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  382 (408)
                      ...........+..|.+|++.|+++.+. .+....+|++++|.+.+.+.+..+....+.+.+++.++..++..+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~  394 (396)
T TIGR00882       320 EVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVFT  394 (396)
T ss_pred             HHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            1111112344566788999999998877 4567789999999999998887776778888888877776665543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.69  E-value=1e-13  Score=132.02  Aligned_cols=284  Identities=9%  Similarity=-0.053  Sum_probs=151.8

Q ss_pred             HhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhHhccccchHHHHHHhh
Q 015377           22 SAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSA  100 (408)
Q Consensus        22 ~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~i~~  100 (408)
                      ...+++++.+++.|++.|++.+.. +....+..++  +++|++..+..+...++|..++++++..+.++.+||..|++.+
T Consensus        88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~  165 (382)
T PRK11128         88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILT  165 (382)
T ss_pred             HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence            345688999999999999876654 3334444454  4567777777888889999999999999888889999998877


Q ss_pred             HHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcccccCCCCCcccccccccccccc
Q 015377          101 IPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVR  180 (408)
Q Consensus       101 i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (408)
                      +..++..+...+.||.++    +++.                               ++  +..+              .
T Consensus       166 ~~~~~~~~~~~~~~~~~~----~~~~-------------------------------~~--~~~~--------------~  194 (382)
T PRK11128        166 AGVASMLLGQLLRPTIMP----QGES-------------------------------RQ--QESA--------------G  194 (382)
T ss_pred             HHHHHHHHHHHccCCCCC----cccc-------------------------------cc--cccc--------------c
Confidence            644443333334444211    0000                               00  0000              0


Q ss_pred             ccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHH
Q 015377          181 KSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPG  259 (408)
Q Consensus       181 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  259 (408)
                      +   .+++..+ +++.+.-.....+....    +.....+.+....+.           +...........+..+..+++
T Consensus       195 ~---~~~~~i~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~-----------g~s~~~~g~~~~~~~~~~~~~  256 (382)
T PRK11128        195 W---PAWKALLKEPTVWRFLLCVSLLQGS----HAAYYGFSAIYWQAA-----------GYSASTIGYLWSLGVVAEVLI  256 (382)
T ss_pred             c---chHHHHHcChhHHHHHHHHHHHHHH----hHhHHHHHHHHHHHC-----------CCCHhHHHHHHHHHHHHHHHH
Confidence            0   0112222 23333222211221111    111111111111111           011111122223445677888


Q ss_pred             HHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHH
Q 015377          260 LLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYA  339 (408)
Q Consensus       260 ~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~  339 (408)
                      .++.+++.||.|+|+.+..+.....+........++.+......+...+......+....+..+.. ...+++..++.+.
T Consensus       257 ~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  335 (382)
T PRK11128        257 FAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSA  335 (382)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHH
Confidence            889999999999999987776665554443333333232222222111111112233344455654 4446788888775


Q ss_pred             hh-hHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Q 015377          340 VG-RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVV  378 (408)
Q Consensus       340 ~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~  378 (408)
                      .+ .+|..++|.+.+.+.+..+. ..++..+++.+++.++
T Consensus       336 ~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        336 LAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            54 35667889998888887654 3455555555544433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.68  E-value=7.7e-15  Score=142.64  Aligned_cols=362  Identities=16%  Similarity=0.144  Sum_probs=200.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRG-LAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~-l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |+|.|.+.+.+.++..++.+++.|+++++++++.-- +.|+|.|..+.....+.-...+|+|+.++++...+-.+|.++-
T Consensus       107 rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~  186 (509)
T KOG2504|consen  107 RFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVF  186 (509)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeH
Confidence            579999999999999999999999999988776654 7788988764332222223347899999999999999999998


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHHH-HHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~-~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      +.+.-.+.+..|||+.+++.+.+.+-..+. ...-|.+|+-.   .+ +++.  .++ .   ..+.+..+...+.+...+
T Consensus       187 ~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~---~~-~~~~--~~~-~---~~~~~~~~~~~~~~~~~~  256 (509)
T KOG2504|consen  187 PPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK---PN-EEKD--LRN-S---AASVESTPKPVELRISER  256 (509)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC---ch-hhhh--hcc-c---cccccccccccccccccC
Confidence            888888888999999999887766554443 33445444311   11 1111  111 0   000000000000000000


Q ss_pred             cccCCCCCcccccccccccc-ccccccchhhhccchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q 015377          159 EEFSTSEETPLLSSARKRTT-VRKSGFSSFLMLFSPRFFKT--TILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSIL  235 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  235 (408)
                      +..............++.++ ...........+++.+..+.  .+...+-.....+.++....+.+....+.        
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~--------  328 (509)
T KOG2504|consen  257 DSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSL--------  328 (509)
T ss_pred             CCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Confidence            00000000000000000000 00000001111112222222  11112222233344444444444443211        


Q ss_pred             cccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Q 015377          236 LSENVQDASVYINVFITSFAELPGLLTAALLVDRVG--RKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGT  313 (408)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~g--rR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (408)
                         ............+.++..++|.++.|++.|+..  ++.....+.+++++....+...++......+.....++....
T Consensus       329 ---g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~  405 (509)
T KOG2504|consen  329 ---GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSF  405 (509)
T ss_pred             ---CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence               112222233334456778899999999999987  344445555555554433333333222222222222222223


Q ss_pred             hhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchh-hHHHHHHHHHHHHHHHHHhcc
Q 015377          314 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQT-AAILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       314 ~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~~~~~~i~~~~~~~~~  383 (408)
                      ......+..|+.+.+.-+.+.|+...+..++..++|.+.+.+.+..+.+ ..+...+++.+++.+..++.+
T Consensus       406 ~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  406 SSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            3445578899999999999999999999999999999988877776643 455666666667766655554

>PTZ00207 hypothetical protein; Provisional

Probab=99.66  E-value=5.3e-14  Score=138.07  Aligned_cols=133  Identities=16%  Similarity=0.110  Sum_probs=100.3

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFS------PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWT   73 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   73 (408)
                      +.|||+++.++.++++++.++++++      ++++.+.++|++.|+|.+.. ......+.+++| ++||++.++...+..
T Consensus        87 r~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~g  165 (591)
T PTZ00207         87 YLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTG  165 (591)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHH
Confidence            4799999999999999999999987      68999999999999998764 344456778886 789999999999999


Q ss_pred             HHHHHHHHHHhHhccccchHHHHHHhhHHHHHH-HHH--HHhccCcchhHhhcCChhhHHHHHHH
Q 015377           74 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVL-LIF--IVFMPESPRYLCTKGRITDAHNILDK  135 (408)
Q Consensus        74 ~G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~--~~~lpESp~~l~~~~~~~~a~~~l~~  135 (408)
                      +|..+.+.+...+.. .+|+..|++.++.+++. ++.  ....|++|+|...+++.+++++.+++
T Consensus       166 LGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~  229 (591)
T PTZ00207        166 LGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRL  229 (591)
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHh
Confidence            999864444333222 46888888776655443 332  33457777777677777777766444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.65  E-value=2.3e-13  Score=132.84  Aligned_cols=105  Identities=15%  Similarity=0.084  Sum_probs=91.4

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCc---chhHHHHHHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN---RGKWMVVFSTFWTFGSV   77 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~~G~~   77 (408)
                      .|||+++.++.++..++.++.++++++..+.++|++.|+|.|.. +...++.+|.+|+++   |+...++++.+.++|.+
T Consensus        76 ~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~  155 (475)
T TIGR00924        76 WGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF  155 (475)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999875 455667889998865   88889999999999999


Q ss_pred             HHHHHHhHhccccchHHHHHHhhHHHHHH
Q 015377           78 SEAALAWIVMPILTWRWLLALSAIPAFVL  106 (408)
Q Consensus        78 l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~  106 (408)
                      +++.+...+.+..+||+.|++.++..++.
T Consensus       156 ig~~l~g~l~~~~g~~~~f~~~~~~~~~~  184 (475)
T TIGR00924       156 ISPLLAGVIAENYGYHVGFNLAAVGMVIG  184 (475)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            99999888888889999999877544333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.65  E-value=4.4e-13  Score=131.03  Aligned_cols=317  Identities=16%  Similarity=0.074  Sum_probs=192.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAF-----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTF   74 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~   74 (408)
                      |..||+.++.+.++..+..+..++     ..+.+.+++.-++.|++.+.. +.-.+.+-|..|+++...+.++.+...++
T Consensus        71 r~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~ni  150 (524)
T PF05977_consen   71 RFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNI  150 (524)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHH
Confidence            568999999999887765543332     246788999999999988765 45566788999999999999999999999


Q ss_pred             HHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCC
Q 015377           75 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGT  154 (408)
Q Consensus        75 G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  154 (408)
                      ..++||.+++.+....|=.+.|.+.++.-++.+.....++..++    ++ ..+.++                       
T Consensus       151 ar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~-~~~~e~-----------------------  202 (524)
T PF05977_consen  151 ARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----PS-SLPRER-----------------------  202 (524)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----cc-ccchhh-----------------------
Confidence            99999999998877778888898887765544333333322110    00 000000                       


Q ss_pred             CCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015377          155 NDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  234 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  234 (408)
                                    ..+       ..++   .++.....+..+..++...........++   ...|.+....       
T Consensus       203 --------------~~~-------~l~~---G~ryv~~~~~l~~~l~~~~~~~l~~~a~~---aLlPl~a~~~-------  248 (524)
T PF05977_consen  203 --------------FFS-------ALRE---GLRYVRSSPPLRSVLLRSFLFNLFASAVW---ALLPLFARDV-------  248 (524)
T ss_pred             --------------hhh-------hHHH---HHHHHhcchHHHHHHHHHHHHHHhhhHHH---HhhhHHHHHH-------
Confidence                          000       0000   11222222333333222222111111111   1223221100       


Q ss_pred             ccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 015377          235 LLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTF  314 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (408)
                         .+.+...........++++++|.++.+.+.+|+++++++..+.+..++.++.+....+.+.....+++..++.....
T Consensus       249 ---l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~  325 (524)
T PF05977_consen  249 ---LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIAN  325 (524)
T ss_pred             ---hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence               01111222233344567788888888888888888887777766666655555554444443333333334334444


Q ss_pred             hhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 015377          315 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       315 ~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  382 (408)
                      ........+..|.++|+++.++..++...+..++..+.+.+.+..+....+.+.+++.+++.++....
T Consensus       326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRF  393 (524)
T ss_pred             HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh
Confidence            55667778999999999999999988877777888888877777666556666555555555554433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.64  E-value=2.7e-13  Score=132.36  Aligned_cols=328  Identities=18%  Similarity=0.188  Sum_probs=174.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   81 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   81 (408)
                      +|||..++.+.++..++.+.++.++|...++++-.+.|+|.|........++|..|.|+|+....+...........++.
T Consensus       105 fGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~  184 (599)
T PF06609_consen  105 FGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPL  184 (599)
T ss_pred             hcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHH
Confidence            79999999999999999999999999999999999999997766554445789999999987776655544444445566


Q ss_pred             HHhHhccccchHHHHHHhhHHHHHHHH--HHHhccCcchhHhhcCC---hhhHHHHHHHHHHH-------------cCCC
Q 015377           82 LAWIVMPILTWRWLLALSAIPAFVLLI--FIVFMPESPRYLCTKGR---ITDAHNILDKIAQF-------------NQTS  143 (408)
Q Consensus        82 l~~~~~~~~~Wr~~f~i~~i~~~~~~~--~~~~lpESp~~l~~~~~---~~~a~~~l~~~~~~-------------~~~~  143 (408)
                      ++..+..+.+|||.|++..+...+.++  +.++.|  |++-..+++   ..|..+.+|.+.-.             +-..
T Consensus       185 ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~P--P~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG  262 (599)
T PF06609_consen  185 IAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFP--PPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGG  262 (599)
T ss_pred             HHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCC--CchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccC
Confidence            665555567999999999876555433  333444  333222222   22334445544421             1011


Q ss_pred             CCCCCccCCCCCCcccccCCCCCccccc------cc-ccccc-ccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 015377          144 LPSGNLTSDGTNDLDEEFSTSEETPLLS------SA-RKRTT-VRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYG  215 (408)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (408)
                      .+...     .+      +.+--.....      .- ..+.. ..+++....+.+.+++   ......+..+...+.||+
T Consensus       263 ~~~~~-----W~------Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r---~~~~~lvi~fi~G~~~~s  328 (599)
T PF06609_consen  263 YPYYP-----WK------SAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRR---GFAALLVISFISGMNFFS  328 (599)
T ss_pred             CCCCC-----CC------CccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccch---HHHHHHHHHHHHHHHHHH
Confidence            00000     00      0000000000      00 00000 0112222222221112   222223344444455666


Q ss_pred             HHH-HHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH-HHHHHHHHHHHHHHHh-
Q 015377          216 IVL-LASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM-TIMFIFVCIFLLPLVT-  292 (408)
Q Consensus       216 ~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~-~~~~~~~~~~~~~~~~-  292 (408)
                      ... |..+...-.....        .............+.+...|.++.+.+..|++|-+.. +++.....+++..+.. 
T Consensus       329 ~~~l~p~~~~~vf~~d~--------~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~  400 (599)
T PF06609_consen  329 VNILWPQQVVNVFGSDP--------ISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV  400 (599)
T ss_pred             HHHHHHHHHhhhccCCC--------cccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc
Confidence            554 4433321100000        0000111111222344556777788888888774444 4554444433333332 


Q ss_pred             -hhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHH
Q 015377          293 -LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAV  353 (408)
Q Consensus       293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~  353 (408)
                       .++......+.....++..+..........-..|.+.-+++.|+..++..+||.++.-++.
T Consensus       401 ~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  401 RPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             cCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence             2222222333333333333333455666667789999999999999988888776655443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.63  E-value=8.3e-13  Score=126.12  Aligned_cols=307  Identities=12%  Similarity=-0.022  Sum_probs=157.7

Q ss_pred             CCcchhHHHHHHHHHHH-HHHHHh-h--hhh-HHHHHHHHHHhhccCCc-chhhhHHHhhhcCCCcchhHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFV-AGLLSA-F--SPN-YISLLILRGLAGAGLGS-GHVFFSWFMEFVPPSNRGKWMVVFSTFWTF   74 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~-~~~~~~-~--~~~-~~~l~~~R~l~Gi~~g~-~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~   74 (408)
                      |.||||..++...+... .....+ +  .++ ...++..-++.++.... .+....+..|..++++|+...+....+..+
T Consensus        65 ~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~l  144 (390)
T TIGR02718        65 RLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMI  144 (390)
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHH
Confidence            46899987555533221 121112 1  222 22333333333232222 233445667888888888888888888889


Q ss_pred             HHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCC
Q 015377           75 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGT  154 (408)
Q Consensus        75 G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  154 (408)
                      |.++++.....+.+..+||..|++.++..++..+..++++|+++-   +.+.+                           
T Consensus       145 G~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~~~---------------------------  194 (390)
T TIGR02718       145 GFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPEAP---------------------------  194 (390)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccccc---------------------------
Confidence            999988777777778899999999987766654444455443210   00000                           


Q ss_pred             CCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q 015377          155 NDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSI  234 (408)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  234 (408)
                         +      ++              .   ..++.+++++..+......+.+......+++.  ..+.+. +.+      
T Consensus       195 ---~------~~--------------~---~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~l~-~~G------  239 (390)
T TIGR02718       195 ---L------AR--------------R---ASLFRFFRRPLAWSLLALALLSAMTAVSGFGL--SKLYLV-DAG------  239 (390)
T ss_pred             ---h------hh--------------H---HHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHH--hhHHHH-hcC------
Confidence               0      00              0   01112222222222222222222212222221  111111 110      


Q ss_pred             ccccCccchhHHHHHHH-HHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHH-HHHHHhh-----hhhHHHHHHHHHHH
Q 015377          235 LLSENVQDASVYINVFI-TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIF-LLPLVTL-----QSNILLTALLSGAR  307 (408)
Q Consensus       235 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~  307 (408)
                           .+.......... .....++|.++++++.||+|+|+.+..+.....+. +......     .+............
T Consensus       240 -----~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (390)
T TIGR02718       240 -----WPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGS  314 (390)
T ss_pred             -----CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHH
Confidence                 111111121112 22355677889999999999999887765544221 1111111     11111111111111


Q ss_pred             HHhhhhhhhhhhhcccccCC-chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Q 015377          308 MFSMGTFIIANIFAPEIYPT-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVV  377 (408)
Q Consensus       308 ~~~~~~~~~~~~~~~el~p~-~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~  377 (408)
                      +.....++.......+..+. +.++++.++.++...+|++++|.+.+.+.+..+....|.+.+++.+++.+
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       315 LITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            11122223444454555555 89999999999999999999999999888876655566665555555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.62  E-value=3e-12  Score=123.84  Aligned_cols=324  Identities=17%  Similarity=0.223  Sum_probs=183.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhhh-hh-HHHHHHHHHHhhccCCcchhh-hHHHhhhcCCCcc-------------------
Q 015377            4 GRMSILGGALVTFVAGLLSAFS-PN-YISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNR-------------------   61 (408)
Q Consensus         4 Rr~~~~~~~~~~~~~~~~~~~~-~~-~~~l~~~R~l~Gi~~g~~~~~-~~~~~E~~p~~~R-------------------   61 (408)
                      ||+.+....++..+++++..+. ++ +....+.-++.-++.+...+. .+++-|.++++++                   
T Consensus       100 Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~  179 (477)
T PF11700_consen  100 RKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYE  179 (477)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhh
Confidence            5555666666666677666664 33 333333333333455544443 4678899999998                   


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHHHhHhc-c-------ccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCC
Q 015377           62 -------GKWMVVFSTFWTFGSVSEAALAWIVM-P-------ILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGR  125 (408)
Q Consensus        62 -------g~~~~~~~~~~~~G~~l~~~l~~~~~-~-------~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~  125 (408)
                             ++..+.-....++|.++.-.+...+. .       ...-|..+.+.++.-+++ ++.++++||.|+--..+..
T Consensus       180 ~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~  259 (477)
T PF11700_consen  180 AVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG  259 (477)
T ss_pred             hHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence                   88888766666677776655554431 1       223588888888875554 6667788887752000000


Q ss_pred             hhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHH
Q 015377          126 ITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVL  205 (408)
Q Consensus       126 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (408)
                      .+-.....+++.+                                               .++...+-+.....++.+++
T Consensus       260 ~~~~~~g~~~l~~-----------------------------------------------t~k~~~~~~~~~~fLia~~l  292 (477)
T PF11700_consen  260 SSYLRFGFKRLWR-----------------------------------------------TFKEIRKLRQLFLFLIAYFL  292 (477)
T ss_pred             hhHHHHHHHHHHH-----------------------------------------------HHHHHHhChHHHHHHHHHHH
Confidence            0000111111111                                               11111111111122222232


Q ss_pred             HH--HHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchH--HHHHHHHH
Q 015377          206 YF--GNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRK--LSMTIMFI  281 (408)
Q Consensus       206 ~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR--~~~~~~~~  281 (408)
                      +.  .+.+...+..+....+               +.+..+.....++..+.+++|+++.+++.||+|.|  +++..+.+
T Consensus       293 ~~dg~~ti~~~~~i~a~~~l---------------g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  293 YSDGVNTIISFAGIYATEVL---------------GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHhc---------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            21  1222222222211111               12233444556666788999999999999999999  66665544


Q ss_pred             HHHH-HHHHHH-h------hhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHH
Q 015377          282 FVCI-FLLPLV-T------LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAV  353 (408)
Q Consensus       282 ~~~~-~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~  353 (408)
                      ...+ .+..+. .      ..+.+....+......+..+..+..-.+.+|+.|....+.-+|+-...++..++++|++++
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g  437 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG  437 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4422 222222 0      2222333333333333344556788889999999999999999999999999999999999


Q ss_pred             HHhhhcch-hhHHHHHHHHHHHHHHHHHhcccccCCcc
Q 015377          354 GLVTSCHQ-TAAILLLEALIVLSVVVILLIPFETKGKE  390 (408)
Q Consensus       354 ~l~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~et~~~~  390 (408)
                      .+.+..+. ...+....++.+++.++ +...++.|++.
T Consensus       438 ~i~~~tg~~r~g~~~l~~lf~~gl~l-l~~v~~~~g~~  474 (477)
T PF11700_consen  438 LITDATGSQRYGFLFLLVLFLIGLIL-LFFVDVEKGRE  474 (477)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHH-Hhhccchhhhh
Confidence            88877663 34555555555566555 45556777763

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.62  E-value=4.4e-13  Score=131.05  Aligned_cols=100  Identities=18%  Similarity=0.163  Sum_probs=87.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHhhccCCcc-hhhhHHHhhhcCCC--cchhHHHHHHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSPNYIS-LLILRGLAGAGLGSG-HVFFSWFMEFVPPS--NRGKWMVVFSTFWTFGSV   77 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G~~   77 (408)
                      .||||+++++.+++.++.++++++++... ++++|+++|+|.|.. +...+.+.|.+|++  +|+...++++.++++|..
T Consensus        78 ~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~  157 (489)
T PRK10207         78 LGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSL  157 (489)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHH
Confidence            79999999999999999999999877554 558999999999875 45567889999987  457788999999999999


Q ss_pred             HHHHHHhHhccccchHHHHHHhhH
Q 015377           78 SEAALAWIVMPILTWRWLLALSAI  101 (408)
Q Consensus        78 l~~~l~~~~~~~~~Wr~~f~i~~i  101 (408)
                      +++.++..+.++.|||+.|++.++
T Consensus       158 ~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        158 ISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             HHHHHHHHHHHhhChHHHHHHHHH
Confidence            999999988888899999998755

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.61  E-value=6.4e-13  Score=130.53  Aligned_cols=104  Identities=15%  Similarity=0.070  Sum_probs=85.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCc--chhHHHHHHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN--RGKWMVVFSTFWTFGSV   77 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~   77 (408)
                      .|||+.+..+.++..++..+.++++ +...+.++|++.|++.|.. +....++.|++|+++  |+...++++.+..+|..
T Consensus        85 ~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~  164 (500)
T PRK09584         85 LGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSF  164 (500)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHH
Confidence            5999999999999999988888874 5667788999999998865 444567889998754  44567888999999999


Q ss_pred             HHHHHHhHhccccchHHHHHHhhHHHHH
Q 015377           78 SEAALAWIVMPILTWRWLLALSAIPAFV  105 (408)
Q Consensus        78 l~~~l~~~~~~~~~Wr~~f~i~~i~~~~  105 (408)
                      +++.+...+.+..|||+.|.+.++..++
T Consensus       165 ~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        165 FSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            9999998888888999999998764444

>TIGR01272 gluP glucose/galactose transporter

Probab=99.59  E-value=3.2e-12  Score=117.77  Aligned_cols=275  Identities=13%  Similarity=0.096  Sum_probs=155.5

Q ss_pred             hhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhHhcc-------------
Q 015377           23 AFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP-------------   88 (408)
Q Consensus        23 ~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~-------------   88 (408)
                      +...+|..+++.-|+.|.|.+.. ....+|+++..|++++.+.+++.+.++.+|.+++|.++..+..             
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            35578999999999999999985 5678899999999999999999999999999999999876542             


Q ss_pred             ---ccchHHHHHHhhHHHHHHHHHHH--hccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcccccCC
Q 015377           89 ---ILTWRWLLALSAIPAFVLLIFIV--FMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFST  163 (408)
Q Consensus        89 ---~~~Wr~~f~i~~i~~~~~~~~~~--~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (408)
                         ..+||+++++.+...++..+.+.  .+||.++      +.++                                 +.
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~---------------------------------~~  125 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA---------------------------------RV  125 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc---------------------------------cc
Confidence               14799999966554433333332  3454211      0000                                 00


Q ss_pred             CCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccch
Q 015377          164 SEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDA  243 (408)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  243 (408)
                      .+++         . .++     ...+..++.+- -.+..+.+.+.-.   +...|.+....+...      ...+....
T Consensus       126 ~~~~---------~-~~~-----~~~~~~~~~~l-~~~~~f~yvg~e~---~~~~w~~~yl~~~~~------~g~s~~~a  180 (310)
T TIGR01272       126 SSGD---------T-TQK-----TSAFQFTHLVL-GALGIFVYVGAEV---SAGSFLVNFLSDPHA------LGLPEDQA  180 (310)
T ss_pred             cccc---------c-cch-----hhHHhhHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHhccc------CCCCHHHH
Confidence            0000         0 000     00000111111 1111222222111   111222221110000      00011111


Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 015377          244 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPE  323 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  323 (408)
                      .  ..........++|.++++++.||+|+|+.+..+..++.+............... ......++....++.......+
T Consensus       181 ~--~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~-~~~l~g~~~s~i~P~~~s~a~~  257 (310)
T TIGR01272       181 A--HFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMW-FVLALGLFNSIMFPTIFSLALN  257 (310)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence            1  122333456778999999999999998887766655554443332222222122 2222334444556777777778


Q ss_pred             ccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHH
Q 015377          324 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAIL  366 (408)
Q Consensus       324 l~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~  366 (408)
                      .+|.+ .+++.++. ..+.+|+.+.|.+.+.+.|..+...++.
T Consensus       258 ~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       258 ALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             hhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            88765 45566664 6788999999999998877666545544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.56  E-value=6.9e-13  Score=119.34  Aligned_cols=116  Identities=21%  Similarity=0.156  Sum_probs=93.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   80 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   80 (408)
                      +.|||+++++++...+++..+-+++.|+..+++.|++.|+.-|--.+..++++|+.++++|++.++..+.++.+|.++||
T Consensus        94 ~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGP  173 (451)
T KOG2615|consen   94 RYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGP  173 (451)
T ss_pred             hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcc
Confidence            47999999999999999999999999998888889999999988778888999999999999999999999999999999


Q ss_pred             HHHhHhcc---ccc--h-HHHHHHhhHHHHH-HHHHHHhccCc
Q 015377           81 ALAWIVMP---ILT--W-RWLLALSAIPAFV-LLIFIVFMPES  116 (408)
Q Consensus        81 ~l~~~~~~---~~~--W-r~~f~i~~i~~~~-~~~~~~~lpES  116 (408)
                      .++..+..   ..+  | -.+-++..+.... ...+.+++||+
T Consensus       174 mIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  174 MIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             hhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            98876543   111  1 1112222233333 45667889999

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.56  E-value=4e-13  Score=126.42  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=99.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   80 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   80 (408)
                      +.|-|+++.++.+.+++.+++.++++++..|.+.|++.|++.|+..+...++..++|+++|+++.+..+.+..+|.++++
T Consensus        88 rlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~  167 (511)
T TIGR00806        88 YLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSS  167 (511)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999876677899999999999999999999999999999


Q ss_pred             HHHhHhccccchHHHHHHhhH---HHHHHHHHHHhccCcch
Q 015377           81 ALAWIVMPILTWRWLLALSAI---PAFVLLIFIVFMPESPR  118 (408)
Q Consensus        81 ~l~~~~~~~~~Wr~~f~i~~i---~~~~~~~~~~~lpESp~  118 (408)
                      +++.. +...+||+.+-+.-+   ...+.++..+++|-.++
T Consensus       168 ~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~  207 (511)
T TIGR00806       168 VLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKR  207 (511)
T ss_pred             HHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            99887 456799987766543   22333556678884443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.52  E-value=1.2e-11  Score=119.16  Aligned_cols=341  Identities=15%  Similarity=0.076  Sum_probs=176.8

Q ss_pred             CCcchhHHHHH-HHHHHHHHHHHhhhhhHHHHH------------HHHHHhhc-----cCCcc-hhhhHHHhhhcCCCcc
Q 015377            1 MEEGRMSILGG-ALVTFVAGLLSAFSPNYISLL------------ILRGLAGA-----GLGSG-HVFFSWFMEFVPPSNR   61 (408)
Q Consensus         1 ~~gRr~~~~~~-~~~~~~~~~~~~~~~~~~~l~------------~~R~l~Gi-----~~g~~-~~~~~~~~E~~p~~~R   61 (408)
                      |.||||.+++. .....++..+.++++++..++            +.+++.|+     +.... ...-++++|.+|+++|
T Consensus        69 r~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~  148 (477)
T TIGR01301        69 RFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR  148 (477)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH
Confidence            58999999886 444445556667776654322            13444444     33322 2234578999999865


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhHhc--cc-------------cchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhc
Q 015377           62 --GKWMVVFSTFWTFGSVSEAALAWIVM--PI-------------LTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTK  123 (408)
Q Consensus        62 --g~~~~~~~~~~~~G~~l~~~l~~~~~--~~-------------~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~  123 (408)
                        +...++.+.+..+|.++++.+++...  +.             .+-|+.|++.++..++. .+..+..+|.|-..  .
T Consensus       149 ~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~  226 (477)
T TIGR01301       149 RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--S  226 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--c
Confidence              57888899999999999998876531  10             16799999988766664 44556778876310  0


Q ss_pred             CChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHH-H
Q 015377          124 GRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTIL-L  202 (408)
Q Consensus       124 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  202 (408)
                      ++.++                          ++.++ .++.++.          ...++-++.++.  -|+..++.++ .
T Consensus       227 ~~~~~--------------------------~~~~~-~~~~~~~----------~~~~~i~~~~~~--mP~~m~~l~~vq  267 (477)
T TIGR01301       227 DDFIN--------------------------SEAAP-PSKHGEE----------AFFGELFGAFKY--LPRPVWILLLVT  267 (477)
T ss_pred             ccchh--------------------------hhccc-ccccchh----------hhHHHHHHHHHH--CCHHHHHHHHHH
Confidence            00000                          00000 0000000          000011111111  1333333322 2


Q ss_pred             HHHHHHHH-HHHHHHHHHHHhhhccCCCCCcccccccCccch-h-HHHHHHHHHhhhhHHHHHHHHHHhhhch-HHHHHH
Q 015377          203 WVLYFGNS-FVYYGIVLLASELSGSQSKCSSSILLSENVQDA-S-VYINVFITSFAELPGLLTAALLVDRVGR-KLSMTI  278 (408)
Q Consensus       203 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~l~dr~gr-R~~~~~  278 (408)
                      ++.|++.. +.+|...+...++.......      ....+.+ . -.....+.++...+.+++-..+.+|+|+ |.....
T Consensus       268 ffsW~a~f~~~~y~T~~vg~~v~~~~~~~------~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~  341 (477)
T TIGR01301       268 CLNWIAWFPFILFDTDWMGREVYGGSVNQ------GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGI  341 (477)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHcCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            23332211 11222222121222111000      0000011 0 0111233334444556677788899985 666677


Q ss_pred             HHHHHHHHHHHHHhhhh------h---------------HHHHHHHHHHHHHhhhhhhhhhhhcccccCCchh--hHHHh
Q 015377          279 MFIFVCIFLLPLVTLQS------N---------------ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR--STGAG  335 (408)
Q Consensus       279 ~~~~~~~~~~~~~~~~~------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R--~~a~g  335 (408)
                      +.++.++++....+..+      .               ...........+.....++++|.+.+|..|.+.|  +.-.|
T Consensus       342 s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mg  421 (477)
T TIGR01301       342 VNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMG  421 (477)
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhh
Confidence            75555554444332111      0               1111222222223344568899999999996544  78888


Q ss_pred             HHHHhhhHhHhhHHHHHHHHhhhcch-h-hHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          336 VAYAVGRIGGMVCPLVAVGLVTSCHQ-T-AAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       336 i~~~~~~~~~~~~p~~~~~l~~~~~~-~-~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      +-|.+-.+..++..+..+.+.+..+. . ..+.+-++..+++++...++.|.++.
T Consensus       422 ilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       422 VLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            88888887777777666665544432 2 34445557778888898998888764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.51  E-value=4.4e-13  Score=134.76  Aligned_cols=116  Identities=16%  Similarity=0.233  Sum_probs=95.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhh---------------------------------------------------hHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSP---------------------------------------------------NYI   29 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~   29 (408)
                      |.|||+.+.++.+++++++++.++.+                                                   .+.
T Consensus        94 r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (633)
T TIGR00805        94 KLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWL  173 (633)
T ss_pred             ccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceeh
Confidence            46899999999999999999887763                                                   256


Q ss_pred             HHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhHhcccc------------------
Q 015377           30 SLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL------------------   90 (408)
Q Consensus        30 ~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~------------------   90 (408)
                      .++++|+++|+|.+.. +...+|+.|++|+++|++..++++....+|.+++++++..+.+.+                  
T Consensus       174 ~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dp  253 (633)
T TIGR00805       174 LFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDP  253 (633)
T ss_pred             hhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCc
Confidence            7889999999999886 456778999999999999999999999999999998877654321                  


Q ss_pred             ----chHHHHHHhhHHHHHHHHHHHhccCc
Q 015377           91 ----TWRWLLALSAIPAFVLLIFIVFMPES  116 (408)
Q Consensus        91 ----~Wr~~f~i~~i~~~~~~~~~~~lpES  116 (408)
                          .||..|++.++..++..+..+++||.
T Consensus       254 rWiGaWwl~Fli~g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       254 RWIGAWWIGFLICGGVALLTSIPFFFFPKA  283 (633)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence                37888888888877765656667765

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.50  E-value=6.5e-11  Score=108.02  Aligned_cols=303  Identities=15%  Similarity=0.172  Sum_probs=183.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      |.|+|+.++++..++.++..+-   +-..+|..++++=|+.|.|.|.- ....+|++-.-|+++-...+++.+.+.++|+
T Consensus        74 k~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa  153 (422)
T COG0738          74 KLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGA  153 (422)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHH
Confidence            5799999999999999988766   45678999999999999999975 5667888888888888888999999999999


Q ss_pred             HHHHHHHhHhcc-------------------ccchHHHHHHhhHHHHHHHHHHHh--ccCcchhHhhcCChhhHHHHHHH
Q 015377           77 VSEAALAWIVMP-------------------ILTWRWLLALSAIPAFVLLIFIVF--MPESPRYLCTKGRITDAHNILDK  135 (408)
Q Consensus        77 ~l~~~l~~~~~~-------------------~~~Wr~~f~i~~i~~~~~~~~~~~--lpESp~~l~~~~~~~~a~~~l~~  135 (408)
                      +++|+++..+..                   ...||+++...+...+++.+....  +||-+.                 
T Consensus       154 ~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~-----------------  216 (422)
T COG0738         154 ILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV-----------------  216 (422)
T ss_pred             HHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-----------------
Confidence            999998765432                   114777777665544444333322  222110                 


Q ss_pred             HHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 015377          136 IAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYG  215 (408)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (408)
                                      +          ++++.       ++    + . ....++++.++++.-.+..+.|.+.....+.
T Consensus       217 ----------------~----------~~~~~-------~~----~-~-~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gs  257 (422)
T COG0738         217 ----------------A----------APSLG-------AS----G-S-AGLSSLFQNKHLRLGVLAIFLYVGAEVAIGS  257 (422)
T ss_pred             ----------------c----------ccccc-------cc----c-c-chHHHHHhChHHHHHHHHHHHHHhHHHHHHH
Confidence                            0          00000       00    0 0 0122344445555555555566655444433


Q ss_pred             HHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh
Q 015377          216 IVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS  295 (408)
Q Consensus       216 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~  295 (408)
                      ....   ...+.        ...+.+....+...+  -.+.++|-+++.++.+|+...+.+........+.++......+
T Consensus       258 fl~~---y~~~~--------~g~~~~~aa~~~s~~--~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g  324 (422)
T COG0738         258 FLVS---YLEEL--------LGLNEQQAAYYLSFF--WVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGG  324 (422)
T ss_pred             HHHH---HHHhc--------CCccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            2221   11100        001122222233222  2456789999999999998888887766555554444444443


Q ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 015377          296 NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS  375 (408)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~  375 (408)
                       ...+..+.++.++....++..+....+..|.+.-..+..++  .+-+||.+.|.+.+.+.|..+....+......|.+-
T Consensus       325 -~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~~l~--maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~ly  401 (422)
T COG0738         325 -VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLV--MAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLY  401 (422)
T ss_pred             -hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccccccceeee--eheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence             33333444445555667788888888999844333333333  344788899999998888766544444333333333

>PRK09669 putative symporter YagG; Provisional

Probab=99.49  E-value=2.6e-11  Score=117.83  Aligned_cols=107  Identities=12%  Similarity=0.012  Sum_probs=67.7

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-h-hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC----
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-L-QSNILLTALLSGARMFSMGTFIIANIFAPEIYP----  326 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p----  326 (408)
                      .+..+++.++.++++||+|+|+.+..+.....+....+.. . ++.........+..+......+..+.+.+|..+    
T Consensus       274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~  353 (444)
T PRK09669        274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK  353 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            4556778888999999999999887765544332222222 1 222222222222223333445677888888875    


Q ss_pred             ---CchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc
Q 015377          327 ---TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  359 (408)
Q Consensus       327 ---~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~  359 (408)
                         .+..+...|+.+.+.++|..++|.+.+.+.+..
T Consensus       354 ~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~  389 (444)
T PRK09669        354 RSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV  389 (444)
T ss_pred             hcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence               334466778888888999999998887766543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=6.8e-13  Score=120.11  Aligned_cols=113  Identities=19%  Similarity=0.281  Sum_probs=101.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCc-chhHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSN-RGKWMVVFSTFWTFGSVS   78 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~-Rg~~~~~~~~~~~~G~~l   78 (408)
                      |.|+|..++.+..++..++++-++..+|+++++.|.++|+|.+... +....+++.+|.++ ||+++++.-.+.++|.++
T Consensus       132 ~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lv  211 (464)
T KOG3764|consen  132 RIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLV  211 (464)
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhcccee
Confidence            4699999999999999999999999999999999999999988764 55778889988866 799999999999999999


Q ss_pred             HHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhc
Q 015377           79 EAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM  113 (408)
Q Consensus        79 ~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~l  113 (408)
                      +|+.+.++-+..|.+.+|.+.++..++-....+++
T Consensus       212 gPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  212 GPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             cCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            99999988778899999999999888876665554

>TIGR00788 fbt folate/biopterin transporter

Probab=99.45  E-value=6.8e-12  Score=122.26  Aligned_cols=305  Identities=12%  Similarity=0.019  Sum_probs=157.4

Q ss_pred             chhHHHHHHHHHH-HHHHHHhhhhhHHHHH-HHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHH---HHHHHHH
Q 015377            4 GRMSILGGALVTF-VAGLLSAFSPNYISLL-ILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFST---FWTFGSV   77 (408)
Q Consensus         4 Rr~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~---~~~~G~~   77 (408)
                      ||+.++++.++.+ +.....+..++...+. +.+++.+++.+.. .+.-.+..|..+ ++++...+....   ...+|.+
T Consensus        94 Rr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~  172 (468)
T TIGR00788        94 KRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGL  172 (468)
T ss_pred             chHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHH
Confidence            4555666665552 3323334445544444 4888888887764 455678889998 555443333333   3457999


Q ss_pred             HHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCc
Q 015377           78 SEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDL  157 (408)
Q Consensus        78 l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  157 (408)
                      +++.++..+.+..+||..|++.++..++..+...++||++.....+.+ ++...                         .
T Consensus       173 vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~-~~~~~-------------------------~  226 (468)
T TIGR00788       173 ISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIG-TYLEM-------------------------N  226 (468)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccccccccccc-ccchh-------------------------h
Confidence            999888888777899999999887666665666778886321000000 00000                         0


Q ss_pred             ccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q 015377          158 DEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILL  236 (408)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  236 (408)
                      .... ...   ..+       ..++..+.....+ ++..++.....++.       |.    ..+........   ....
T Consensus       227 ~~~~-~~~---~~~-------~~~~~~~~l~~~l~~~~i~~~l~fifl~-------~~----~~~~~~~~~f~---~~~~  281 (468)
T TIGR00788       227 MALL-TLG---VLA-------NVKVQILGLRGAIQLLEIAKPLIFIFLS-------YA----NLPGASGSVFC---ATTQ  281 (468)
T ss_pred             hhhh-hhh---HHH-------HHHHHHHHHHHHHhcHHHHHHHHHHHHH-------Hh----hcCCCCceeEE---EEcc
Confidence            0000 000   000       0000001111111 22222211111110       10    01111000000   0000


Q ss_pred             ccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----h------hhhHHHHHHHHHH
Q 015377          237 SENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----L------QSNILLTALLSGA  306 (408)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~  306 (408)
                      ..+.............++..++|..+.+.+.+|++.|+++..+.++..+.......    .      .+...........
T Consensus       282 ~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~  361 (468)
T TIGR00788       282 CLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIA  361 (468)
T ss_pred             cCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHH
Confidence            01112223333444556788889999999999999999988877666554322110    0      1111110111111


Q ss_pred             HHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc
Q 015377          307 RMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH  360 (408)
Q Consensus       307 ~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~  360 (408)
                      .+.....+.....+.+++.|.+.+++.+++.+++..+|+.+++.+.+.+.+..+
T Consensus       362 ~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       362 EVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            111112234457788899999999999999999999999999977776665544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK11462 putative transporter; Provisional

Probab=99.42  E-value=3e-10  Score=110.68  Aligned_cols=108  Identities=17%  Similarity=0.056  Sum_probs=66.8

Q ss_pred             CCcchhHHH-HHHHHHHHHHHHHhhhhh------HHHHHHHHHHhhccCCcchh-hhHHHhhhcC-CCcchhHHHHHHHH
Q 015377            1 MEEGRMSIL-GGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGHV-FFSWFMEFVP-PSNRGKWMVVFSTF   71 (408)
Q Consensus         1 ~~gRr~~~~-~~~~~~~~~~~~~~~~~~------~~~l~~~R~l~Gi~~g~~~~-~~~~~~E~~p-~~~Rg~~~~~~~~~   71 (408)
                      |.||||..+ ++.+...++.++.-..|+      ...+.+.-++..++.-...+ -.++..|.++ ++||.+..++-..+
T Consensus        75 r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~  154 (460)
T PRK11462         75 RWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVL  154 (460)
T ss_pred             CCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            578887755 455666666555443442      33445555555554433322 2345678888 68899999998888


Q ss_pred             HHHHHHHHHHHHhHhcc-------ccchHHHHHHhhHHHHHHHH
Q 015377           72 WTFGSVSEAALAWIVMP-------ILTWRWLLALSAIPAFVLLI  108 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~~~-------~~~Wr~~f~i~~i~~~~~~~  108 (408)
                      ..+|..+++.+...+..       ..+|+....+.+++.++...
T Consensus       155 ~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~  198 (460)
T PRK11462        155 ATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA  198 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence            88887777665433221       13688887777776655443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.41  E-value=1.8e-10  Score=111.43  Aligned_cols=289  Identities=19%  Similarity=0.183  Sum_probs=161.7

Q ss_pred             CCcchhHHH-HHHHHHHHHHHHHhhh-h-------hHHHHHHHHHHhhccCCcchh-hhHHHhhhcCC-CcchhHHHHHH
Q 015377            1 MEEGRMSIL-GGALVTFVAGLLSAFS-P-------NYISLLILRGLAGAGLGSGHV-FFSWFMEFVPP-SNRGKWMVVFS   69 (408)
Q Consensus         1 ~~gRr~~~~-~~~~~~~~~~~~~~~~-~-------~~~~l~~~R~l~Gi~~g~~~~-~~~~~~E~~p~-~~Rg~~~~~~~   69 (408)
                      |.||||..+ ++..+..++.++.... |       ....+.+.-++..++.....+ ..++..|.++. ++|.+..+.-+
T Consensus        67 r~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~  146 (428)
T PF13347_consen   67 RWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRM  146 (428)
T ss_pred             cccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHH
Confidence            578777755 5666666666666555 4       223346666666665554433 34567899984 78999999888


Q ss_pred             HHHHHHHHHHHHHHhHhc----cc---cchHHHHHHhhHHHHHHHH-HHHhccCcchhHhhcCChhhHHHHHHHHHHHcC
Q 015377           70 TFWTFGSVSEAALAWIVM----PI---LTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQ  141 (408)
Q Consensus        70 ~~~~~G~~l~~~l~~~~~----~~---~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~  141 (408)
                      .+..+|.++.+.+...+.    +.   .+|++...+.++..++..+ ..+..+|.++      +.+              
T Consensus       147 ~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~------~~~--------------  206 (428)
T PF13347_consen  147 IFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV------EVT--------------  206 (428)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc------ccc--------------
Confidence            888888865555444332    11   2799999988887776544 4555566110      000              


Q ss_pred             CCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 015377          142 TSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILL-WVLYFGNSFVYYGIVLLA  220 (408)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  220 (408)
                                       ++   .++.+              -.+.++.+++.|.+...... .+.++...+..-...++.
T Consensus       207 -----------------~~---~~~~~--------------~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~  252 (428)
T PF13347_consen  207 -----------------EQ---EKKIS--------------LRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYF  252 (428)
T ss_pred             -----------------cc---ccccc--------------cccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence                             00   00000              00112233333333322222 222222222111112222


Q ss_pred             HhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh--hhHH
Q 015377          221 SELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ--SNIL  298 (408)
Q Consensus       221 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~--~~~~  298 (408)
                      .......               ........+..+..+++.++.++++||+|+|+.+..+..+..+.........  +...
T Consensus       253 ~~vl~~~---------------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (428)
T PF13347_consen  253 TYVLGNE---------------GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWL  317 (428)
T ss_pred             HHHhcCc---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHH
Confidence            2221110               0111222344566788899999999999999999888777766554444332  3333


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhcccccCC-------chhhHHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 015377          299 LTALLSGARMFSMGTFIIANIFAPEIYPT-------SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  358 (408)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~el~p~-------~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~  358 (408)
                      ...............+...+.+.+|+.+.       +..+.-.|+.+...+++..+++.+.+.+++.
T Consensus       318 ~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~  384 (428)
T PF13347_consen  318 VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL  384 (428)
T ss_pred             HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence            33333333333344557788888988873       3347778888888899888888877766543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.41  E-value=1.7e-10  Score=113.06  Aligned_cols=108  Identities=16%  Similarity=0.096  Sum_probs=66.1

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----hhhh-HHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----LQSN-ILLTALLSGARMFSMGTFIIANIFAPEIY  325 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~  325 (408)
                      +..+..+++.++.+++.||+|+|+.+..+..+..+....+..    ..+. ...........+.....+...+.+.+|..
T Consensus       274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~i  353 (473)
T PRK10429        274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTV  353 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            334667888899999999999999987665543332222211    1111 21111111222222334466778888884


Q ss_pred             C-----Cchh--hHHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 015377          326 P-----TSMR--STGAGVAYAVGRIGGMVCPLVAVGLVTS  358 (408)
Q Consensus       326 p-----~~~R--~~a~gi~~~~~~~~~~~~p~~~~~l~~~  358 (408)
                      +     +..|  +...|....+.+++..+++.+.+.+.+.
T Consensus       354 d~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~  393 (473)
T PRK10429        354 DYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL  393 (473)
T ss_pred             hhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4     5444  5666888888899999998888776643

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.40  E-value=4e-10  Score=101.44  Aligned_cols=307  Identities=20%  Similarity=0.164  Sum_probs=190.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhh-hHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|-++.+.++.++..++.++-... +...++.+-.+.|.|++...+. ..++-|.+|+ +-|.+++.|.....+|..++
T Consensus        73 ~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLa  150 (395)
T COG2807          73 RFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALA  150 (395)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHH
Confidence            3566788888888888888877666 7788999999999999986554 5577788876 55789999999999999999


Q ss_pred             HHHHhHhcccc-chHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPIL-TWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~-~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      +.++..+..+. +||....+=++|+++.++.++  |...|.     +.                  ++            
T Consensus       151 a~lavpla~~~~gW~~aL~~WAl~allAl~~Wl--Pq~~r~-----~~------------------~~------------  193 (395)
T COG2807         151 AALAVPLAQHSGGWRGALGFWALLALLALLIWL--PQALRE-----QA------------------AS------------  193 (395)
T ss_pred             hhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh--hhcccc-----cc------------------cc------------
Confidence            98887776555 799999888888877666554  332221     00                  00            


Q ss_pred             cccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSE  238 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  238 (408)
                      .      ..         +.+.     +.+.+.++.-|+    +.+.+..+...||...-|.|.+..+.+...       
T Consensus       194 ~------~~---------~~~~-----~~~vw~~~~aW~----vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa-------  242 (395)
T COG2807         194 I------AT---------KLVS-----VRKVWRSPLAWQ----VTLFMGLQSLLYYIVIGWLPAILIDRGLSA-------  242 (395)
T ss_pred             c------cc---------cccc-----ccccccCchhHH----HHHHHHhhHHHHHHHHHHHHHHHHHcCCCH-------
Confidence            0      00         0000     000111222222    233344577889999999998865443211       


Q ss_pred             CccchhHHHHHHHHHhhhhHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhh
Q 015377          239 NVQDASVYINVFITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVT-LQSNILLTALLSGARMFSMGTFII  316 (408)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~-grR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  316 (408)
                          .......-+..+.+++.++....+.+|. ++|+..+.......+-...+.+ ..+......  ++..+...+.++.
T Consensus       243 ----~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~--~llG~G~G~~F~l  316 (395)
T COG2807         243 ----AEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILWA--LLLGLGQGGAFPL  316 (395)
T ss_pred             ----HHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHhCccchHHHH
Confidence                1112233455677889999999999975 6666655544433332322222 222222221  2222222344555


Q ss_pred             hhhhcccccC-CchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhh-HHHHHHHHHHHHHHHHHhcc
Q 015377          317 ANIFAPEIYP-TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTA-AILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       317 ~~~~~~el~p-~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~~  383 (408)
                      .-.....-.+ .+.-+.=.|+...+|++-+.++|.+++.+.|..+++. +...+..+.+...+..+...
T Consensus       317 aL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a~  385 (395)
T COG2807         317 ALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRAG  385 (395)
T ss_pred             HHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhcc
Confidence            5444444443 3555667788888999999999999999999877543 44455555555555555443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.38  E-value=2.8e-12  Score=126.16  Aligned_cols=136  Identities=17%  Similarity=0.009  Sum_probs=98.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHH-HHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLL---SAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVV-FSTFWTFG   75 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G   75 (408)
                      +.|||+.+..+.+...+....   ...+++...++++|++.|++.+... ....+..|.+|++.||...++ ++.+...|
T Consensus       312 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g  391 (490)
T PRK10642        312 RFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA  391 (490)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH
Confidence            469999988877654433322   2334567888899999998766542 345567899999999998886 56655544


Q ss_pred             HHHHHHHHhHhcc-ccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhc-----CChhhHHHHHHHHH
Q 015377           76 SVSEAALAWIVMP-ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTK-----GRITDAHNILDKIA  137 (408)
Q Consensus        76 ~~l~~~l~~~~~~-~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~-----~~~~~a~~~l~~~~  137 (408)
                       .+++.+...+.+ ..+|+.++++..+++++..+..+++||||+|+.++     ||.|||++.++|++
T Consensus       392 -~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~  458 (490)
T PRK10642        392 -GLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY  458 (490)
T ss_pred             -HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence             455555444433 34688888877777777767777789999999865     99999999999886

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.38  E-value=6.3e-10  Score=102.37  Aligned_cols=321  Identities=17%  Similarity=0.172  Sum_probs=184.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHhhccCCcchhh-hHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            4 GRMSILGGALVTFVAGLLSAFSPN---YISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         4 Rr~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~R~l~Gi~~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      ||+.+-+..++..+++++..++++   +...++.-.+..++.....+. .+++.+..++++-|+..+.-...-.+|+++.
T Consensus        88 Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~  167 (438)
T COG2270          88 RKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVIL  167 (438)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccCcccccccccccccchHH
Confidence            566666777777778887777766   344555556777777665544 4678889999888887665433444454433


Q ss_pred             HHHHhH--h-c---------------cccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCCh-hhHHHHHHHHHHH
Q 015377           80 AALAWI--V-M---------------PILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRI-TDAHNILDKIAQF  139 (408)
Q Consensus        80 ~~l~~~--~-~---------------~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~-~~a~~~l~~~~~~  139 (408)
                      -...+.  + .               +...=|..+.+.++.-+++ ++++++.||-++-   +... +--++..+++.  
T Consensus       168 li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~---~~~~~~~l~~g~k~L~--  242 (438)
T COG2270         168 LIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKI---SSPPPTALRNGFKELK--  242 (438)
T ss_pred             HHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccc---cccchHHHHHHHHHHH--
Confidence            322211  1 1               2235788888888866555 4556666655430   0000 00001111111  


Q ss_pred             cCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHH--HHHHHHHHHH
Q 015377          140 NQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYF--GNSFVYYGIV  217 (408)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  217 (408)
                                                                   .++++.+..+....+++..+.+.  .+.+.-.+..
T Consensus       243 ---------------------------------------------~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~  277 (438)
T COG2270         243 ---------------------------------------------STFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGV  277 (438)
T ss_pred             ---------------------------------------------HHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence                                                         01122222222222222222221  1222222221


Q ss_pred             HHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhH
Q 015377          218 LLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI  297 (408)
Q Consensus       218 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~  297 (408)
                      +-...+               +.++.++........+.+++|+++.+++.||+|-|+++..+.++..+..+...+...+.
T Consensus       278 fg~~~~---------------gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~  342 (438)
T COG2270         278 FGAADL---------------GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGEL  342 (438)
T ss_pred             HHHHHc---------------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccH
Confidence            111111               23345667777788899999999999999999999888877666555443333333333


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchh-hHHHHHHHHHHHHH
Q 015377          298 LLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQT-AAILLLEALIVLSV  376 (408)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~-~~~~~~~~~~~i~~  376 (408)
                      ....+-.....+..+..+..-.|.+++.|.+.-+..+|+-+..|+.+++.+|+.+..+.+.++.. ..+..+..+.+++.
T Consensus       343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl  422 (438)
T COG2270         343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL  422 (438)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH
Confidence            33223222222334567888999999999999999999999999999999999998777766543 33444445545554


Q ss_pred             HHHHhcccccCCcc
Q 015377          377 VVILLIPFETKGKE  390 (408)
Q Consensus       377 ~~~~~~~~et~~~~  390 (408)
                       ..+...|+.+.++
T Consensus       423 -~~L~~v~~~~~~~  435 (438)
T COG2270         423 -LLLLRVKVPGRRE  435 (438)
T ss_pred             -hhEEeecCCCCcc
Confidence             4455555554443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.28  E-value=8.9e-10  Score=107.95  Aligned_cols=183  Identities=12%  Similarity=0.174  Sum_probs=108.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhch
Q 015377          193 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGR  272 (408)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gr  272 (408)
                      +++++.....|..++......+....+.+.+..+.+           ..............++..++.++.|+++||+||
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-----------ls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~  100 (476)
T PLN00028         32 RPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLN-----------LTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGP  100 (476)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            344555555666665555555555544454443221           111122222333446677899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHH
Q 015377          273 KLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA  352 (408)
Q Consensus       273 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~  352 (408)
                      |+.+..+.+..++..+......+........+...+.. +.......+.+|.+|.+.|+++.|+.+..+.+|+.+++.+.
T Consensus       101 r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~-~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~  179 (476)
T PLN00028        101 RYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL-ATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLM  179 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHH
Confidence            99888776666555444433333222222112222221 22223344678999999999999999988888877776665


Q ss_pred             HHHhh----h-----cchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          353 VGLVT----S-----CHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       353 ~~l~~----~-----~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      +.+..    .     .++...+.+.++++++..+..+++++|..
T Consensus       180 ~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p  223 (476)
T PLN00028        180 PLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLP  223 (476)
T ss_pred             HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            53321    1     24556778888877777777677665543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.27  E-value=2e-08  Score=95.45  Aligned_cols=137  Identities=16%  Similarity=0.209  Sum_probs=86.2

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHH----HHHHhhhhhhhhhhhcccc
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-QSNILLTALLSG----ARMFSMGTFIIANIFAPEI  324 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~el  324 (408)
                      .+..+.+++-....+++.+|+|-|++++.+.+...+=....... ++..........    -.......+.....|..|.
T Consensus       250 ~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~  329 (400)
T PF03825_consen  250 ALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRI  329 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence            45567889999999999999999999888776655422222222 222222221111    0111112235566788999


Q ss_pred             cCCchhhHHHhHHHHhh-hHhHhhHHHHHHHHhhhcchh------hHHHHHHHHHHHHHHHHHhccccc
Q 015377          325 YPTSMRSTGAGVAYAVG-RIGGMVCPLVAVGLVTSCHQT------AAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       325 ~p~~~R~~a~gi~~~~~-~~~~~~~p~~~~~l~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      .|.+.|+++.|+-++.. .+|+.++.++.+.+.+..+..      ..+.+.+++.++..++..++-+|+
T Consensus       330 ~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  330 APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999988875 488999999988888765432      223444454444444444444443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.27  E-value=5.9e-09  Score=98.81  Aligned_cols=333  Identities=17%  Similarity=0.147  Sum_probs=177.4

Q ss_pred             CCcchhH-HHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHhhccCCcchhh-hHHHhhhcCC-CcchhHHHHHHHH
Q 015377            1 MEEGRMS-ILGGALVTFVAGLLSAFSPN------YISLLILRGLAGAGLGSGHVF-FSWFMEFVPP-SNRGKWMVVFSTF   71 (408)
Q Consensus         1 ~~gRr~~-~~~~~~~~~~~~~~~~~~~~------~~~l~~~R~l~Gi~~g~~~~~-~~~~~E~~p~-~~Rg~~~~~~~~~   71 (408)
                      |.||||- ++.+.....+...++-.+++      .....+.-.+.|++.-...+. .++..|.++. +||.+..++-+.+
T Consensus        78 r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~  157 (467)
T COG2211          78 RWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVF  157 (467)
T ss_pred             ccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHH
Confidence            5788776 55555777788887777764      334555566666655432222 2345677665 7899999999999


Q ss_pred             HHHHHHHHHHHHhHh----cc---ccchHHHHHHhhHHHHHHHHHHH-hccCcchhHhhcCChhhHHHHHHHHHHHcCCC
Q 015377           72 WTFGSVSEAALAWIV----MP---ILTWRWLLALSAIPAFVLLIFIV-FMPESPRYLCTKGRITDAHNILDKIAQFNQTS  143 (408)
Q Consensus        72 ~~~G~~l~~~l~~~~----~~---~~~Wr~~f~i~~i~~~~~~~~~~-~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~  143 (408)
                      ..+|.++...+...+    .+   ..|||..-++.++.+++..+..+ ...|.+.         ++.             
T Consensus       158 ~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~---------~~~-------------  215 (467)
T COG2211         158 ASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV---------ETQ-------------  215 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC---------ccc-------------
Confidence            988877766554332    22   34899988888887766654433 3333211         000             


Q ss_pred             CCCCCccCCCCCCcccccCCCCCcccccccccccccccccc-chhhhccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 015377          144 LPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGF-SSFLMLFSPRFFKTTILLWVLYF-GNSFVYYGIVLLAS  221 (408)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  221 (408)
                           .              .++            ..+.++ ..+..+++.+-++..+++.+..+ +.++.--...++..
T Consensus       216 -----~--------------~~~------------~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~  264 (467)
T COG2211         216 -----P--------------TKT------------GVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVT  264 (467)
T ss_pred             -----c--------------Ccc------------cccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEE
Confidence                 0              000            000000 01222333222222222211111 11111111111111


Q ss_pred             hhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh--HHH
Q 015377          222 ELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN--ILL  299 (408)
Q Consensus       222 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~--~~~  299 (408)
                      ..              .+..+...+..........+++.++...+.+|+|+|+++..+.++..+....+.+...+  ...
T Consensus       265 y~--------------lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~  330 (467)
T COG2211         265 YV--------------LGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLI  330 (467)
T ss_pred             EE--------------cCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHH
Confidence            10              11222333344445556667778999999999999999998877776655554443322  222


Q ss_pred             HHHHHHHHHHhhhhhhhhhhhcccccC-----Cchh--hHHHhHHHHhhhHhHhhHHHHHHHHhhhcch-----------
Q 015377          300 TALLSGARMFSMGTFIIANIFAPEIYP-----TSMR--STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ-----------  361 (408)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~el~p-----~~~R--~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~-----------  361 (408)
                      .+............+++.|...+|+..     +..|  +...|...++.++|..++..+.+..+...|.           
T Consensus       331 ~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv~~~~~Q~~~a  410 (467)
T COG2211         331 VVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYVPNVSAQSASA  410 (467)
T ss_pred             HHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCHHH
Confidence            222233333444556788998886653     3344  6667888888899888888777765543321           


Q ss_pred             ----hhHHHHH-HHHHHHHHHHHHhcccccCCcccccccccccccc
Q 015377          362 ----TAAILLL-EALIVLSVVVILLIPFETKGKELVNTIDGVSNSK  402 (408)
Q Consensus       362 ----~~~~~~~-~~~~~i~~~~~~~~~~et~~~~~~~~~~~~~~~~  402 (408)
                          ...+.+. +++.+++++...+++ - .++.+++++++.++.|
T Consensus       411 l~gI~~~~~~~Pa~l~l~~~i~~~~y~-L-~~~~~~~I~~eL~~r~  454 (467)
T COG2211         411 LFGIRFLFIILPALLLLLAAIIIFFYK-L-NEKMHKEIIEELEQRK  454 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-C-CHHHHHHHHHHHHHHh
Confidence                1122222 334444444444442 2 2345566666666554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.24  E-value=3e-10  Score=91.26  Aligned_cols=133  Identities=18%  Similarity=0.186  Sum_probs=94.3

Q ss_pred             hhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHH
Q 015377          254 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  333 (408)
Q Consensus       254 ~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a  333 (408)
                      +..+++....+++.||.|||+.+..+.....+.........+............+......+..+.+..|.+|++.|+++
T Consensus         9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (141)
T TIGR00880         9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA   88 (141)
T ss_pred             hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence            44566778899999999999998877666555444433333322222222222222233446677888999999999999


Q ss_pred             HhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          334 AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       334 ~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      .++.+....++..++|.+.+.+.+..+....+.+.+.+.+++.+..+++.||+
T Consensus        89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999999999888777655555667777777777777777777764

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.21  E-value=1.5e-09  Score=104.44  Aligned_cols=182  Identities=9%  Similarity=0.004  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHH
Q 015377          196 FKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLS  275 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~  275 (408)
                      ++....+++.++.+.+.........+.+..+.+           .+............++..++.+..++++||+|||+.
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~-----------~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~   75 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLG-----------LSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRW   75 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcC-----------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHH
Confidence            334444555555544444444444444432211           111222233334456667888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHH
Q 015377          276 MTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  355 (408)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l  355 (408)
                      +..+.++..+........++.......-+...+...+..+....+.+|.+|.+.|+++.|+.+....+|..++|.+.+.+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  155 (412)
T TIGR02332        76 IAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI  155 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88877666655444444333222222222222222233455567789999999999999999999889999999887766


Q ss_pred             hh------hcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          356 VT------SCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       356 ~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      .+      ..++...|.+.++..++..++.+++.||++.
T Consensus       156 ~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       156 LALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            53      2355667777777777666666777778763

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.20  E-value=8.8e-10  Score=111.81  Aligned_cols=137  Identities=15%  Similarity=0.095  Sum_probs=90.1

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      ..+..++.++|.++.|+++||+|||+.++.+.++.++..+...+..+.......-++..++..+..+....+.+|.+|.+
T Consensus       208 ~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~  287 (742)
T TIGR01299       208 GLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE  287 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence            34445778899999999999999999998877666554444443333222222223333333445578899999999999


Q ss_pred             hhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc-------------chhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          329 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-------------HQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       329 ~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      .|+...++...+..+|+++++.+...+....             ++...+.+ +++..+..++..++.||+
T Consensus       288 ~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i-~~lp~ll~ll~~~~lPES  357 (742)
T TIGR01299       288 KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV-CAFPCVFAIGALTFMPES  357 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHH-HHHHHHHHHHHHHHcCCC
Confidence            9999999999998899888887655443221             12223333 333344444556666787

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.19  E-value=1.6e-09  Score=104.10  Aligned_cols=140  Identities=17%  Similarity=0.134  Sum_probs=94.1

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ......++.+++.++.++++||+|||+.+..+.++..+..+......+............+......+....+.+|.+|.
T Consensus        55 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~  134 (406)
T PRK11551         55 AFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGP  134 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH
Confidence            34445577788999999999999999999887666555444333333322222222222222223345667788999999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      +.|+++.++.+....+|+.++|.+...+.+..+....+.+.+++.++..+...++.||++
T Consensus       135 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        135 RLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            999999999999988999999887765555555555666666666666555556566764

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.19  E-value=1.3e-09  Score=103.67  Aligned_cols=143  Identities=19%  Similarity=0.138  Sum_probs=99.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP  326 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p  326 (408)
                      .......+...++.++.|.++||+|||+.+..+..+..+........++........+...+......+....+..|.+|
T Consensus        44 ~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~  123 (385)
T TIGR00710        44 MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYP  123 (385)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcC
Confidence            33444556778899999999999999999988766665554444333332222222222222222334556778899999


Q ss_pred             CchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 015377          327 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  389 (408)
Q Consensus       327 ~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~  389 (408)
                      .+.|+++.|+.+....++..++|.+.+.+.+..+....+.+.+++.++..+...+..||++.+
T Consensus       124 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       124 GEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999999998888777666666667777777777766666667776554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09848 glucuronide transporter; Provisional

Probab=99.18  E-value=2.3e-08  Score=97.40  Aligned_cols=106  Identities=9%  Similarity=0.014  Sum_probs=66.4

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-hhH-HHHHHHHHHHHHhhhhhhhhhhhcccccCC---
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SNI-LLTALLSGARMFSMGTFIIANIFAPEIYPT---  327 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~el~p~---  327 (408)
                      .+..+++..+.+++.||+|+|+.+..+..+..+....+.... ++. ..........+......+..+...+|..|.   
T Consensus       274 ~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~  353 (448)
T PRK09848        274 LVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY  353 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            345667888899999999999998887665544333332221 111 111111122222233345567777777764   


Q ss_pred             ----chhhHHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 015377          328 ----SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  358 (408)
Q Consensus       328 ----~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~  358 (408)
                          +.++...|+.+...++|..+++.+.+.+.+.
T Consensus       354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                3568889999999999999988887766543

>TIGR00895 2A0115 benzoate transport

Probab=99.18  E-value=9.3e-10  Score=104.93  Aligned_cols=138  Identities=20%  Similarity=0.143  Sum_probs=95.4

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCch
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  329 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~  329 (408)
                      ....+..+++.++.++++||+|||+.+..+..+..+.........+.........+..+......+....+.+|.+|.+.
T Consensus        59 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  138 (398)
T TIGR00895        59 SAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF  138 (398)
T ss_pred             HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh
Confidence            34456678889999999999999999988776665544443333332222222222222223344667888899999999


Q ss_pred             hhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          330 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       330 R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      |+++.|+......+|+.++|.+.+.+.+..+....+.+.+..+++..+....+.||+.
T Consensus       139 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999988887776656555666665566666566666666764

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.17  E-value=1.8e-09  Score=103.14  Aligned_cols=142  Identities=15%  Similarity=0.079  Sum_probs=96.9

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ......+...++.++.|+++||+|||+.+..+.....+.........+........+.............+.+..|.+|.
T Consensus        43 ~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~  122 (392)
T PRK10473         43 AFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD  122 (392)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH
Confidence            33344566677889999999999999999887666655444443333222221111222222222345667788999999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  389 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~  389 (408)
                      +.|+++.++.+....+++.++|.+...+.+..++...+.+.+++.++..+..++..||++.+
T Consensus       123 ~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  184 (392)
T PRK10473        123 RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA  184 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            99999999999999999999998877665555555667777777777777666666777544

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.17  E-value=4.2e-09  Score=100.69  Aligned_cols=138  Identities=12%  Similarity=0.061  Sum_probs=95.4

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCch
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  329 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~  329 (408)
                      ....+...++.++.+.++||+|||+.+..+..+..+.........+.......-....+......+....+.+|.+|.+.
T Consensus        62 ~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~  141 (394)
T PRK10213         62 TVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT  141 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH
Confidence            34456667788999999999999999988877766654444333332222222222222222334566777899999999


Q ss_pred             hhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          330 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       330 R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      |+.+.++......++..++|.+.+.+.+..++...+.+.+.+++++.+......||++
T Consensus       142 ~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        142 VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            9999999999999999999999888777666666777766666665555555456754

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.16  E-value=1e-07  Score=92.55  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=77.6

Q ss_pred             CC-cchhHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCC--cchhHHHHHHHHHHHH
Q 015377            1 ME-EGRMSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPS--NRGKWMVVFSTFWTFG   75 (408)
Q Consensus         1 ~~-gRr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~~G   75 (408)
                      |. ||||+++++.++..++.++.+... +...+.++-.+.++|.|.. +...++++|.+|++  +|....++++....+|
T Consensus        71 RilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG  150 (493)
T PRK15462         71 KVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVG  150 (493)
T ss_pred             HccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHH
Confidence            44 999999999999988877665543 2223333333344444543 33456789999986  6888899999999999


Q ss_pred             HHHHHHHHhHhccccchHHHHHHhhHHHHH
Q 015377           76 SVSEAALAWIVMPILTWRWLLALSAIPAFV  105 (408)
Q Consensus        76 ~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~  105 (408)
                      ..++|.+...+.+..|||+.|.+.++..++
T Consensus       151 ~~iap~l~g~L~~~~Gw~~~F~iaaigm~l  180 (493)
T PRK15462        151 SIIAPIACGYAQEEYSWAMGFGLAAVGMIA  180 (493)
T ss_pred             HHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence            999999999888888999999987664333

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.16  E-value=3.9e-10  Score=90.56  Aligned_cols=116  Identities=23%  Similarity=0.323  Sum_probs=98.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+..+..++.+...+.+++..+.+.+++.|++.+.. +....+..|..|+++|++..+..+....+|..++
T Consensus        24 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  103 (141)
T TIGR00880        24 RFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLG  103 (141)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHh
Confidence            468999999999999988888888899999999999999988765 3456678899999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPES  116 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpES  116 (408)
                      +.+...+.+..+||+.+++.++..++..+ ..+..||+
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880       104 PPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            99988888888999999988776665543 44455653

>PRK10054 putative transporter; Provisional

Probab=99.15  E-value=3e-09  Score=101.77  Aligned_cols=137  Identities=12%  Similarity=0.076  Sum_probs=91.6

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCch
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  329 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~  329 (408)
                      ....+..+++.+..|.++||+|||+.+..+.....+....+.+.++...................+....+.+|.+|.+.
T Consensus        50 s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  129 (395)
T PRK10054         50 TIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS  129 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH
Confidence            34446677888999999999999998887766655544444333332222111111111111223456777889999999


Q ss_pred             hhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          330 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       330 R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      |+++.|+.+....+|..++|.+.+.+.+ .+....+.+.+++.+++.+...+..||++
T Consensus       130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        130 KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999988886654 45566777777776776655555444543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.15  E-value=4.7e-09  Score=98.36  Aligned_cols=142  Identities=18%  Similarity=0.109  Sum_probs=97.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP  326 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p  326 (408)
                      .......+...++.+..|.++||+|||+.+..+.++.++......+..+........+...+......+....+..|.+|
T Consensus        36 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~  115 (352)
T PF07690_consen   36 LLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFP  115 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccch
Confidence            34444556778899999999999999998888777766653332332332322222223333333445677888999999


Q ss_pred             CchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          327 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       327 ~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      .+.|+++.|+.+....+|..++|.+.+.+.+..+....+.+.++++++..++..++.++++.
T Consensus       116 ~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~  177 (352)
T PF07690_consen  116 PEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPP  177 (352)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred             hhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccc
Confidence            99999999999999999999999988877655566677888888888777654455544443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.14  E-value=4.1e-09  Score=102.17  Aligned_cols=139  Identities=12%  Similarity=0.073  Sum_probs=95.4

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ......+...++.++.|+++||+|||+.+..+.++.++.........+............+.....++....+.+|.+|.
T Consensus        63 ~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~  142 (434)
T PRK11663         63 LATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR  142 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH
Confidence            33445567788999999999999999999888777766555444433322222211122222222345567788999999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      +.|+++.|+.+..+.+|+.++|.+.+.+.+..++...+.+.++++++..+...+..||+
T Consensus       143 ~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        143 TERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999998888777766666677777766655544444444554

>PRK10504 putative transporter; Provisional

Probab=99.14  E-value=5.6e-09  Score=102.32  Aligned_cols=180  Identities=11%  Similarity=0.014  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHH
Q 015377          197 KTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM  276 (408)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~  276 (408)
                      +..+.++..++...+..+....+.|.+..+.+           .+............+...++.++.++++||+|||+.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~   78 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQSLG-----------ESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF   78 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-----------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence            34444555555555555555555555543211           1111212222333456677889999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHh
Q 015377          277 TIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  356 (408)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~  356 (408)
                      +.+..+.++.........+............+......+....+..|.+|.+.|+++.|+.+..+.+|..++|.+.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         79 FTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            87665555444333333322222222222222222334566777889999999999999999999999999999888777


Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          357 TSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       357 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      +..++...|.+...++.++.+......|+.+
T Consensus       159 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        159 EYASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            7666566676666666666666666655554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.14  E-value=3.5e-09  Score=102.61  Aligned_cols=168  Identities=17%  Similarity=0.208  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhh-chHHHHHHH
Q 015377          201 LLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV-GRKLSMTIM  279 (408)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~-grR~~~~~~  279 (408)
                      .+....+...+.+|+...+.+......          .+.+................++.+++|+++||+ |||+.++.+
T Consensus        13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~----------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG   82 (493)
T PRK15462         13 YVVALQIWEYFSFYGMRALLILYLTNQ----------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG   82 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            344444556677887776655443211          011111222222333355567889999999999 999998887


Q ss_pred             HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhh-hhhhhhhcccccCCc--hhhHHHhHHHHhhhHhHhhHHHHHHHH
Q 015377          280 FIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGT-FIIANIFAPEIYPTS--MRSTGAGVAYAVGRIGGMVCPLVAVGL  355 (408)
Q Consensus       280 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~el~p~~--~R~~a~gi~~~~~~~~~~~~p~~~~~l  355 (408)
                      .++..+....+.... +........... ....+. .+....+.+|+||++  .|.++.++.++.+++|+.++|.+.+.+
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~l~li-~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L  161 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLSLAII-VCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA  161 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHH-HHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence            766555433332211 111111111111 111222 244567789999986  799999999999999999999999988


Q ss_pred             hhhcchhhHHHHHHHHHHHHHHHH
Q 015377          356 VTSCHQTAAILLLEALIVLSVVVI  379 (408)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~i~~~~~  379 (408)
                      .+..+.+..|.+.++..+++.+..
T Consensus       162 ~~~~Gw~~~F~iaaigm~l~li~~  185 (493)
T PRK15462        162 QEEYSWAMGFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HhhhChHHHHHHHHHHHHHHHHHH
Confidence            776666666766555544544443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.12  E-value=1.9e-09  Score=102.46  Aligned_cols=141  Identities=14%  Similarity=0.127  Sum_probs=99.2

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ...+..+...++.++.|+++||+|||+.+..+.++.++.........+............+......+....+.+|.+|+
T Consensus        34 ~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  113 (399)
T TIGR00893        34 VFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPA  113 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH
Confidence            33445567788899999999999999998877666555444433333322222222222222233445667888999999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      +.|+++.++......+|..++|.+.+.+.+..+....+.+.+++.++..+..++..||++.
T Consensus       114 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       114 SERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            9999999999999999999999888877766666667777777777776666666666544

>PRK03699 putative transporter; Provisional

Probab=99.12  E-value=1.3e-08  Score=97.46  Aligned_cols=131  Identities=15%  Similarity=0.146  Sum_probs=86.4

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCch
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  329 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~  329 (408)
                      ....++..++.++.+++.||+|||+.+..+..+..+.........+........+...++.....+....+.+|.+|.+.
T Consensus        49 s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~  128 (394)
T PRK03699         49 TFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ  128 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch
Confidence            34456778899999999999999999887766655544444433332222222222222222233455677889999999


Q ss_pred             hhHHHhHHHHhhhHhHhhHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHH
Q 015377          330 RSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVIL  380 (408)
Q Consensus       330 R~~a~gi~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~  380 (408)
                      |+.+.+..+....+++.++|.+.+.+... .++...+.+.+++.++..+...
T Consensus       129 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        129 RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999998888888888888887766543 3555667666766655544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.11  E-value=7.1e-09  Score=99.57  Aligned_cols=139  Identities=19%  Similarity=0.078  Sum_probs=95.0

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCch
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  329 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~  329 (408)
                      ....+...++.++.|.++||+|||+.+..+.....+.........+........+..........+..+.+..|.+|.+.
T Consensus        55 ~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  134 (406)
T PRK15402         55 TAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD  134 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH
Confidence            34456677888999999999999999888766665554444333332222222222122112223456677789999999


Q ss_pred             hhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          330 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       330 R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      |..+.++......++..++|.+.+.+.+..++...+.+.+++++++.+..++..||++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        135 AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            99999999888888888999888777665566667777777777776666666777754

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.11  E-value=1.2e-07  Score=89.08  Aligned_cols=144  Identities=11%  Similarity=0.085  Sum_probs=94.4

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCch
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  329 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~  329 (408)
                      .+..+.+++...+..++.+|+|.|+.++++..+.++=.+......+.+.....-..-..-.-.......-|.++.+|++.
T Consensus       266 s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl  345 (412)
T PF01306_consen  266 SVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL  345 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH
Confidence            34456788899999999999999999988766655544444444443332211111100001112334557899999999


Q ss_pred             hhHHHhHHHHhh-hHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 015377          330 RSTGAGVAYAVG-RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN  393 (408)
Q Consensus       330 R~~a~gi~~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~  393 (408)
                      .++...+...+. .++.++.+.+.+.+.|..|....|.+++++.++..++..+..++.+.....+
T Consensus       346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~~~~~  410 (412)
T PF01306_consen  346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQIVHP  410 (412)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSSTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcccccC
Confidence            999999987664 4788888888899999887767888999888877778787776666554443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.11  E-value=8.3e-09  Score=99.71  Aligned_cols=119  Identities=18%  Similarity=0.133  Sum_probs=82.3

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      ..+..+...++.++.|+++||+|||+.+..+.++.++.........+.......-+...+...+.++....+..|.+|.+
T Consensus        59 ~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~  138 (426)
T PRK12307         59 ATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH  138 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh
Confidence            33445677889999999999999999998887776665544443333222222222222222234556677889999999


Q ss_pred             hhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHH
Q 015377          329 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILL  367 (408)
Q Consensus       329 ~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~  367 (408)
                      .|+++.|+......+|.+++|.+.+.+.+..++...+.+
T Consensus       139 ~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i  177 (426)
T PRK12307        139 LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV  177 (426)
T ss_pred             HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence            999999999988889999998887766665555455544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.10  E-value=8.4e-09  Score=98.69  Aligned_cols=181  Identities=15%  Similarity=0.170  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHH
Q 015377          195 FFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKL  274 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~  274 (408)
                      .++.....++.++...+..+......+.+..+.+           .+.........+..+...++.++.|+++||+|||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~   78 (405)
T TIGR00891        10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFG-----------LTTVDAASLISAALISRWFGALMFGLWGDRYGRRL   78 (405)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3444445555555555555555555555432221           11122223333445677888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHH
Q 015377          275 SMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG  354 (408)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~  354 (408)
                      .+..+.++..+..+......+........+..........+....+..|.+|.+.|+++.++.+....+|.+++|.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        79 PMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99887666555444433333222222222222222223345567778899999999999999999999999999988776


Q ss_pred             Hhhhcc--hhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          355 LVTSCH--QTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       355 l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      +.+..+  +...+.+.+...++. +......||++
T Consensus       159 l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~  192 (405)
T TIGR00891       159 VVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAE  192 (405)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence            665443  334444433333333 33344456654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.09  E-value=9e-09  Score=99.03  Aligned_cols=138  Identities=12%  Similarity=0.050  Sum_probs=95.8

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchh
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  330 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R  330 (408)
                      +..++..++.+..|.++||+|||+.+..+.++..+..+.....++.......-+...+......+..+.+..|.+|.+.|
T Consensus        59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~  138 (413)
T PRK15403         59 LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKG  138 (413)
T ss_pred             HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            33466677889999999999999999887766655544444333322222222222222112234456778899999999


Q ss_pred             hHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          331 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       331 ~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      +++.++.+....++..++|.+.+.+.+..++...|.+.+++.+++.+...+..||++.
T Consensus       139 ~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        139 IKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            9999999999999999999887777666566677888787777776665666678754

>PRK03545 putative arabinose transporter; Provisional

Probab=99.08  E-value=1e-08  Score=97.91  Aligned_cols=137  Identities=9%  Similarity=0.026  Sum_probs=93.2

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchh
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  330 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R  330 (408)
                      ...+...++.+..+.++||+|||+++..+....++........++.......-...........+....+.+|.+|.+.|
T Consensus        52 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r  131 (390)
T PRK03545         52 IYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKK  131 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhh
Confidence            33455567778889999999999999888776665544444333322222211222222222234556777899999999


Q ss_pred             hHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          331 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       331 ~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      +++.|+......+|..++|.+.+.+.+..++...+.+.++++++..+......||.+
T Consensus       132 ~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        132 AQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999899999999988877766666667788877777766666555555543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.08  E-value=4.8e-09  Score=103.16  Aligned_cols=140  Identities=14%  Similarity=0.044  Sum_probs=98.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      .....+...++.++.++++||+|||+.++.+..+..+.........+............+......+....+..|.+|++
T Consensus        43 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~  122 (485)
T TIGR00711        43 ITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE  122 (485)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH
Confidence            34445777888999999999999999998877766655444443333222222222222222334466778889999999


Q ss_pred             hhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          329 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       329 ~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      .|+++.++......+|..++|.+.+.+.+..++...+.+.+...++..+...++.||++.
T Consensus       123 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       123 KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            999999999999999999999988877776666666776666666666666666666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.08  E-value=1.5e-08  Score=100.08  Aligned_cols=164  Identities=19%  Similarity=0.197  Sum_probs=102.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhch
Q 015377          193 PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGR  272 (408)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gr  272 (408)
                      +++++....++..++.+.+.+.......+.+....+           ..............++..++.++.++++||+||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----------~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~   84 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFG-----------LTTVQAASLISAAFISRWFGGLLLGAMGDRYGR   84 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            445555555666666666666555555555532211           111122223334456677889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHH
Q 015377          273 KLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA  352 (408)
Q Consensus       273 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~  352 (408)
                      |+.+..+.++.++.........+........+...+...+.++....+..|.+|.+.|+.+.++.+....+|+.++|.+.
T Consensus        85 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  164 (496)
T PRK03893         85 RLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVY  164 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988877666554444433333222222222222222334456677889999999999999999999999999999988


Q ss_pred             HHHhhhcchhhHHHH
Q 015377          353 VGLVTSCHQTAAILL  367 (408)
Q Consensus       353 ~~l~~~~~~~~~~~~  367 (408)
                      +.+.+..++...+.+
T Consensus       165 ~~l~~~~~w~~~f~~  179 (496)
T PRK03893        165 SLVVPVWGWRALFFI  179 (496)
T ss_pred             HHHhccCCHHHHHHH
Confidence            877665554444443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.07  E-value=1.8e-08  Score=94.81  Aligned_cols=136  Identities=14%  Similarity=0.054  Sum_probs=90.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHhhhhhhhhhhhc
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-----SNILLTALLSGARMFSMGTFIIANIFA  321 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (408)
                      ....+..+...++.++.|+++||+|||+.++.+..+..+.........     +............+......+....+.
T Consensus        38 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~  117 (365)
T TIGR00900        38 LAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAML  117 (365)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444567778889999999999999999887665544333322222     222222222222222223345667888


Q ss_pred             ccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 015377          322 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       322 ~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  382 (408)
                      +|.+|.+.|+++.|+.+....+|.+++|.+.+.+.+..+....+.+.++..+++.+....+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       118 PDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999888877766665566666565555555444444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.04  E-value=2.4e-09  Score=101.29  Aligned_cols=140  Identities=16%  Similarity=0.126  Sum_probs=93.9

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ...+..+...++.++.|+++||+|||+.+..+.++..+..+......+............+......+....+.+|.+|.
T Consensus        35 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  114 (379)
T TIGR00881        35 LLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR  114 (379)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCH
Confidence            33444567778899999999999999999887776665554444433322222222222222233346667788999999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHH-HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCP-LVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p-~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      +.|+++.++.+....+|+.++| .+...+.+..+....+.+.+++.++..+...++.||++
T Consensus       115 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881       115 SERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             hhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            9999999999999999999998 44444444445556666667666666566666655643

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.03  E-value=9.5e-09  Score=97.56  Aligned_cols=139  Identities=14%  Similarity=0.093  Sum_probs=97.6

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCch
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  329 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~  329 (408)
                      ....+...++.++.+.++||+|||+.+..+.....+.........+........+...++.....+....+.+|.+|.+.
T Consensus        33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~  112 (377)
T PRK11102         33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE  112 (377)
T ss_pred             HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            34456677889999999999999999988776666554444433332222222222222222333556778899999999


Q ss_pred             hhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          330 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       330 R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      |+++.++.+....+|..++|.+.+.+.+..+....+.+.+.++++..+...+..||++.
T Consensus       113 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (377)
T PRK11102        113 FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLP  171 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            99999999999999999999888877766566667777777777776666666667643

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.02  E-value=3.9e-08  Score=96.98  Aligned_cols=136  Identities=17%  Similarity=0.062  Sum_probs=92.0

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc-CCchhh
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIY-PTSMRS  331 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~-p~~~R~  331 (408)
                      .+....+.+..|+++||+|||+.+..+..+..+..+.....++.......-....+...+..+.......+.+ |.+.|+
T Consensus        51 ~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~  130 (495)
T PRK14995         51 SLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN  130 (495)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4455567788999999999999998887776665554444443332222222222222222333344444555 779999


Q ss_pred             HHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          332 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       332 ~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      ++.|+......+|..++|.+.+.+.+..++.+.|.+...++++..+...+..||.++
T Consensus       131 ~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        131 MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999998888777676677777666666666666666667543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.00  E-value=3.1e-08  Score=96.58  Aligned_cols=139  Identities=14%  Similarity=0.046  Sum_probs=85.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ----SNILLTALLSGARMFSMGTFIIANIFAPEI  324 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~el  324 (408)
                      .....+...++.++.|+++||+|||++++.+..+..+..+......    +.........+..++.....+.......|.
T Consensus        69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~  148 (452)
T PRK11273         69 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  148 (452)
T ss_pred             HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence            3444567788999999999999999998887776665544433221    111111222222222222234445566899


Q ss_pred             cCCchhhHHHhHHHHhhhHhHh-hHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          325 YPTSMRSTGAGVAYAVGRIGGM-VCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       325 ~p~~~R~~a~gi~~~~~~~~~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      +|++.|+++.|+.+....+|+. .+|.+...+....++...+.+.++++++..++.+++.||+.
T Consensus       149 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        149 WSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             CChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCH
Confidence            9999999999998888888764 45543322322234556677777766666566666656653

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.99  E-value=4.7e-08  Score=93.48  Aligned_cols=140  Identities=16%  Similarity=0.035  Sum_probs=90.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      .....+...++.++.|.++||+|||+.+..+.....+.........+........+...+......+....+..|.+|.+
T Consensus        49 ~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  128 (394)
T PRK11652         49 MAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT  128 (394)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH
Confidence            33445667788999999999999999988776665554443333332222211111111211122344556678999999


Q ss_pred             hhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          329 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       329 ~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      .|+.+.+..+....++..++|.+.+.+.+..++...+.+.++..++..+...++.||++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        129 QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            999999988887778888888887776665566666777666665555555556677643

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.99  E-value=3e-08  Score=97.07  Aligned_cols=173  Identities=17%  Similarity=0.098  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhh-hchHHHHHHH
Q 015377          201 LLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDR-VGRKLSMTIM  279 (408)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr-~grR~~~~~~  279 (408)
                      .++...+.+.+.||+..-+.+........        .+.+............+...++.+++|+++|| +|||+.+..+
T Consensus        14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~~--------lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~   85 (475)
T TIGR00924        14 TLFFVELWERFSYYGMQGILAVYLVQQAG--------LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG   85 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence            34455566777788766655544321100        01111122233334456678899999999999 8999999888


Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc---hhhHHHhHHHHhhhHhHhhHHHHHHHHh
Q 015377          280 FIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS---MRSTGAGVAYAVGRIGGMVCPLVAVGLV  356 (408)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~---~R~~a~gi~~~~~~~~~~~~p~~~~~l~  356 (408)
                      ..+.++....+....+...................+....+.+|.+|.+   .|+++.++.+...++|+.++|.+.+.+.
T Consensus        86 ~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~  165 (475)
T TIGR00924        86 GIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA  165 (475)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence            7776665444443332222211111111221122355567778999875   4899999999999999999999988877


Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHh
Q 015377          357 TSCHQTAAILLLEALIVLSVVVILL  381 (408)
Q Consensus       357 ~~~~~~~~~~~~~~~~~i~~~~~~~  381 (408)
                      +..+....|.+.++.++++.+...+
T Consensus       166 ~~~g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       166 ENYGYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHH
Confidence            7666666666666555555444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.99  E-value=2.3e-08  Score=95.20  Aligned_cols=140  Identities=11%  Similarity=0.038  Sum_probs=95.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      .....++..++.++.|+++||+|||+.+..+..+.++........++............+......+....+..|.+|.+
T Consensus        44 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  123 (382)
T PRK10091         44 ISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG  123 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH
Confidence            33445777889999999999999999998887776665544444333332222222222222222344556778999999


Q ss_pred             hhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          329 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       329 ~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      .|+.+.++......++..++|.+...+.+..++...+.+.+...++..+...+..||.+.
T Consensus       124 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~  183 (382)
T PRK10091        124 KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD  183 (382)
T ss_pred             HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            999999998888888888888877766665566677777777766666665666677543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.99  E-value=4e-08  Score=92.79  Aligned_cols=137  Identities=20%  Similarity=0.266  Sum_probs=84.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      .....+...++.++.|+++||+|||+.+..+.++..+......... +........+..... .+.+.....+.+|.+|.
T Consensus        43 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~  121 (366)
T TIGR00886        43 VAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPK  121 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCH
Confidence            3444567788999999999999999998887776665544443333 222221121222222 23344456678899999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhh----------cchhhHH-HHHHHHHHHHHHHHHhccccc
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS----------CHQTAAI-LLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~----------~~~~~~~-~~~~~~~~i~~~~~~~~~~et  386 (408)
                      +.|+++.++....+.+|..+++.+.+.+...          .++...+ +..+.+..+..++.+++.+|+
T Consensus       122 ~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (366)
T TIGR00886       122 KIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADT  191 (366)
T ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccC
Confidence            9999999999888888777777666554432          1333445 333544444444444444443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.99  E-value=2.4e-08  Score=94.31  Aligned_cols=137  Identities=13%  Similarity=-0.006  Sum_probs=89.8

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCch
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  329 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~  329 (408)
                      ....++..++.+..|+++||+|||+++..+...............+-......-++... ..+.........+|.+|.+.
T Consensus        33 s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~-g~~~~~~~~~~~~~~~~~~~  111 (368)
T TIGR00903        33 ITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAAL-GQPFLLNAFAPAASQIREER  111 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh-HhHHHHHHHHHHHHHcCHHH
Confidence            33456677888999999999999987654433332222111111211111111111111 12233344555589999999


Q ss_pred             hhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          330 RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       330 R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      |+++.++......+|+.+++.+.+.+.+..++...|++.+++.++..+..++..||.+
T Consensus       112 r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       112 RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999988887777667767777778887777777777777754

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.97  E-value=1.5e-07  Score=81.94  Aligned_cols=123  Identities=13%  Similarity=0.052  Sum_probs=77.3

Q ss_pred             hhHHHHHHHHHHhhhchHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhH
Q 015377          256 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIF---LLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  332 (408)
Q Consensus       256 ~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~  332 (408)
                      ..+.+.+.|.++||.||+..++.+..+..+.   .+...+ -+++....++-+..   ...-+..|...+-+.|-+.-++
T Consensus       313 sav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~-lsPy~~m~~lGLsy---sllAcslWP~va~~vpE~qLGT  388 (459)
T KOG4686|consen  313 SAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF-LSPYTSMTFLGLSY---SLLACSLWPCVASLVPEEQLGT  388 (459)
T ss_pred             hhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh-ccHHHHHHHHhhhH---HHHHHHHhhhhhhhCCHHHhcc
Confidence            3456678899999999999988766555432   111111 22333322221111   1112346777888899999999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchh----hHHHHHHHHHHHHHHHHHhc
Q 015377          333 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQT----AAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       333 a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~----~~~~~~~~~~~i~~~~~~~~  382 (408)
                      |+|.+..+.++|-.+.|++.+.+.+.-+.+    ..++..+.+.+.+..+.+.+
T Consensus       389 aygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~  442 (459)
T KOG4686|consen  389 AYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL  442 (459)
T ss_pred             hHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence            999999999999989999988776654422    23344455555554444444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.94  E-value=3.8e-08  Score=95.51  Aligned_cols=140  Identities=16%  Similarity=0.100  Sum_probs=90.1

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh---hhH-HHHHHHHHHHHHhhhhhhhhhhhccc
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ---SNI-LLTALLSGARMFSMGTFIIANIFAPE  323 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e  323 (408)
                      ......++..++.++.|+++||+|||+.+..+.++.++..+......   +.. .......+..++....++.......|
T Consensus        66 ~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~  145 (438)
T TIGR00712        66 ALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVH  145 (438)
T ss_pred             HHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            33445567788999999999999999988877666555444332211   111 11111112222222223445566679


Q ss_pred             ccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhh-hcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          324 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT-SCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       324 l~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      .+|.+.|+++.|+.+....+++.++|.+.....+ ..++...+.+.++++++..+..+++.||++
T Consensus       146 ~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~  210 (438)
T TIGR00712       146 WWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTP  210 (438)
T ss_pred             hcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence            9999999999999999988988888776654443 234556777777777776666666666653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.94  E-value=2.3e-08  Score=94.50  Aligned_cols=140  Identities=14%  Similarity=0.065  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015377          246 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIY  325 (408)
Q Consensus       246 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  325 (408)
                      .....+..++..++.+..|.++||+|||+.+..+.++..+..+......+............+.....+........|.+
T Consensus        41 g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  120 (377)
T TIGR00890        41 AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWF  120 (377)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHc
Confidence            33444556777889999999999999999998877766655544443333222212111222222222333444567778


Q ss_pred             CCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          326 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       326 p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      | +.|+++.++......+|..+.+.+...+.+..+....+.+.++.+++..+..+++.+|.
T Consensus       121 ~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  180 (377)
T TIGR00890       121 P-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP  180 (377)
T ss_pred             C-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            7 56999999998888888776655555555544555677777777777666666655443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.93  E-value=8.9e-08  Score=91.89  Aligned_cols=135  Identities=19%  Similarity=0.135  Sum_probs=91.6

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchh
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  330 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R  330 (408)
                      +..+...++.++.|.++||+|||+.+..+.....+..+......+............+. .+..+....+..|.+|.+.|
T Consensus        62 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~  140 (408)
T PRK09874         62 ITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL-GGFVPNANALIATQVPRNKS  140 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hhhHHhHHHHHHHhcCHhhh
Confidence            44466677888999999999999998877665555444333333222221111111121 23334455667789999999


Q ss_pred             hHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          331 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       331 ~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      +.+.|+.+....+|.+++|.+.+.+.+..+....+.+.+++.+++.+...++.||.
T Consensus       141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            99999999988899999998888777666666677777777777766666666664

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.91  E-value=1.5e-07  Score=90.18  Aligned_cols=133  Identities=11%  Similarity=-0.020  Sum_probs=88.9

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhH
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  332 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~  332 (408)
                      .+......++.|.++||+|||+.+..+.....+........++.+..........+......+....+..|.+|.+.|++
T Consensus        56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  135 (400)
T PRK11646         56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR  135 (400)
T ss_pred             HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            34455567889999999999999988777766655544443332222222222222111223445667789999999999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          333 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       333 a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      +.|+.+....+|..++|.+.+.+. ..+....+.+.+..++++.+...+..||.
T Consensus       136 a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        136 FFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999999999999888776 44555666666666666555544555554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.90  E-value=3.1e-07  Score=88.30  Aligned_cols=143  Identities=11%  Similarity=0.069  Sum_probs=89.1

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHhhhhhhhhh
Q 015377          244 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL-----QSNILLTALLSGARMFSMGTFIIAN  318 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  318 (408)
                      +......+..+.+.++.+..|++.||+|.|+++..+..+.++..+...+.     .+.......-....+ ..+.++...
T Consensus        71 q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gi-gg~~f~~~~  149 (462)
T PRK15034         71 QLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGF-AGANFASSM  149 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHH-HHHhHHHHH
Confidence            33444445556666777888999999999998888777766554444432     121111111111112 233456667


Q ss_pred             hhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHh-----hhc-------------chhhHHHHHHHHHHHHHHHHH
Q 015377          319 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV-----TSC-------------HQTAAILLLEALIVLSVVVIL  380 (408)
Q Consensus       319 ~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~-----~~~-------------~~~~~~~~~~~~~~i~~~~~~  380 (408)
                      ...++.||.+.|+++.|+....+.+|..+.+++.+.+.     ...             +......++....++..+..+
T Consensus       150 ~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~  229 (462)
T PRK15034        150 GNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAW  229 (462)
T ss_pred             HHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            77899999999999999998888888877666665433     211             122344567776667766666


Q ss_pred             hcccccC
Q 015377          381 LIPFETK  387 (408)
Q Consensus       381 ~~~~et~  387 (408)
                      ++.+|.+
T Consensus       230 ~~~~~~~  236 (462)
T PRK15034        230 SGMNDIA  236 (462)
T ss_pred             HhCCCcc
Confidence            6655543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.89  E-value=8.4e-08  Score=89.61  Aligned_cols=135  Identities=23%  Similarity=0.192  Sum_probs=92.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ......+...++.++.|.++||+|||+.+..+.....+........++............+......+....+..|.+|+
T Consensus        39 ~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  118 (352)
T cd06174          39 IVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP  118 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCc
Confidence            33444567788999999999999999988887776666555444333322222222222222223346667888999999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhc
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI  382 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~  382 (408)
                      +.|+++.++.+....+|+.++|.+.+.+.+..+....+.+.+...+++.+...++
T Consensus       119 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (352)
T cd06174         119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFL  173 (352)
T ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988877776555556666666665555554433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.87  E-value=4.6e-08  Score=90.20  Aligned_cols=144  Identities=17%  Similarity=0.107  Sum_probs=110.6

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 015377          244 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPE  323 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  323 (408)
                      +........++..-++-++.|.++||.+.|..+..++++++++.+.+.+..+-....++..+...+....++...-..+.
T Consensus        65 ~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~  144 (448)
T COG2271          65 QLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITH  144 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            33444444456667889999999999999999999999999988887776644444444444444443445777778889


Q ss_pred             ccCCchhhHHHhHHHHhhhHhHhhHHHHH--HHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          324 IYPTSMRSTGAGVAYAVGRIGGMVCPLVA--VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       324 l~p~~~R~~a~gi~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      -||++-|++..++=+...++|+.+.|.+.  ..+..+.+....|++-++++++..++.++..+||.
T Consensus       145 Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P  210 (448)
T COG2271         145 WFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP  210 (448)
T ss_pred             HcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999999999888877  66666556677888989888888888888876653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.87  E-value=3.1e-07  Score=90.81  Aligned_cols=109  Identities=18%  Similarity=0.135  Sum_probs=74.2

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHhhhhhhhhhhh
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS------NILLTALLSGARMFSMGTFIIANIF  320 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  320 (408)
                      .......++.++|.++.++++||+|||+.+..+.++..+..+......+      .......-+...+...+.++....+
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~  139 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAII  139 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            3444556778899999999999999999987766655544333222211      1112222222223333445677899


Q ss_pred             cccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHH
Q 015377          321 APEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  355 (408)
Q Consensus       321 ~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l  355 (408)
                      .+|.+|++.|+++.++.+....+|..+++.+...+
T Consensus       140 ~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~  174 (502)
T TIGR00887       140 TSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIV  174 (502)
T ss_pred             HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888888887665433

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11043 putative transporter; Provisional

Probab=98.87  E-value=3.1e-07  Score=88.01  Aligned_cols=139  Identities=17%  Similarity=0.105  Sum_probs=92.2

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ...+..+...++.++.|+++||+|||+.+..+..+..+.........+........+...+...........+..|.+|.
T Consensus        46 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~  125 (401)
T PRK11043         46 SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA  125 (401)
T ss_pred             HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc
Confidence            33444566788999999999999999999887666555444333333222221111111111112223345667899999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      +.|....+..+....+++.++|.+.+.+.+..++...+.+.+.+.++..+...++++|.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        126 QKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            99999999988888889999998888777766666677777777776666666665443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.86  E-value=1.2e-07  Score=92.86  Aligned_cols=119  Identities=13%  Similarity=0.033  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc--hhhH
Q 015377          257 LPGLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQS-NILLTALLSGARMFSMGTFIIANIFAPEIYPTS--MRST  332 (408)
Q Consensus       257 ~~g~~~~~~l~dr-~grR~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~--~R~~  332 (408)
                      ....+++|+++|| +|||++++.+.++..+.........+ ...................+....+.+|.||.+  .|..
T Consensus        64 ~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~  143 (489)
T PRK10207         64 YGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDG  143 (489)
T ss_pred             HHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhc
Confidence            3445689999999 99999999887776665444433222 111111122222222222345567889999987  4578


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHH
Q 015377          333 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLS  375 (408)
Q Consensus       333 a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~  375 (408)
                      +.++.+...++|+.++|.+.+.+.+..++...|.+.++..+++
T Consensus       144 ~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~  186 (489)
T PRK10207        144 AFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIA  186 (489)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence            8999999999999999998888877767666666544433333

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.86  E-value=3.4e-07  Score=85.25  Aligned_cols=139  Identities=14%  Similarity=0.070  Sum_probs=102.2

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015377          246 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIY  325 (408)
Q Consensus       246 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  325 (408)
                      .....+.+++..++.++...+.||+.||++++....+..+.........+-......=.+..+.....+++...+.+++.
T Consensus        51 G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv  130 (394)
T COG2814          51 GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLV  130 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34445556777889999999999999999998766665554443333222121111112222233345677888999999


Q ss_pred             CCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccc
Q 015377          326 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  384 (408)
Q Consensus       326 p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  384 (408)
                      |++.|++|.++.+.-..++.+++..+..++-+..|+..+|.+.+.+.+++.+......|
T Consensus       131 pp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         131 PPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             CccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999888888888767777777778888999999999999999888888

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.85  E-value=2.9e-07  Score=85.57  Aligned_cols=327  Identities=15%  Similarity=0.145  Sum_probs=174.4

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhh------hHH--HHHHHHHHhhccCCcchhhhH-HHhhhcCCCcchhHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSP------NYI--SLLILRGLAGAGLGSGHVFFS-WFMEFVPPSNRGKWMVVFSTFW   72 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~------~~~--~l~~~R~l~Gi~~g~~~~~~~-~~~E~~p~~~Rg~~~~~~~~~~   72 (408)
                      .|=|...+++.++-.+++.+-..+.      .+.  ..+.+..+.+.+.-..-...+ .-.-|+|+++|..+...-.++.
T Consensus       106 ~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n  185 (480)
T KOG2563|consen  106 FGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGN  185 (480)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcc
Confidence            4667778888888887776554432      223  444555555544321111111 2235679999999998888888


Q ss_pred             HHHHHHHHHHHhHhcc------ccchHHH--HHHhh-HHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCC
Q 015377           73 TFGSVSEAALAWIVMP------ILTWRWL--LALSA-IPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTS  143 (408)
Q Consensus        73 ~~G~~l~~~l~~~~~~------~~~Wr~~--f~i~~-i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~  143 (408)
                      .+|..++.++.-.+.+      +..|-..  |+... +-.+.+....+..+|.|+.-                       
T Consensus       186 ~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP-----------------------  242 (480)
T KOG2563|consen  186 PLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP-----------------------  242 (480)
T ss_pred             hHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----------------------
Confidence            8888888877766543      3457663  44222 22222222233334433210                       


Q ss_pred             CCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015377          144 LPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASEL  223 (408)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  223 (408)
                           ++..      +  ..+++.              ...++.+.+++.   ++..+....+..+...+|+........
T Consensus       243 -----ps~s------~--~~~~~~--------------~f~~si~~~~~n---~~F~il~~~ygi~~g~F~~l~~~l~~~  292 (480)
T KOG2563|consen  243 -----PSAS------Q--AALQDA--------------SFPKSIKSCFKN---RQFIILAICYGIGLGLFNSLSTLLNLA  292 (480)
T ss_pred             -----Cchh------H--hhhhcC--------------cHHHHHHHHHcC---ccHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence                 0000      0  000000              011122222222   123344555555555566655443311


Q ss_pred             hccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhch-HHHHHHHHHHHHHH-HHHHHhh---hhhHH
Q 015377          224 SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGR-KLSMTIMFIFVCIF-LLPLVTL---QSNIL  298 (408)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~gr-R~~~~~~~~~~~~~-~~~~~~~---~~~~~  298 (408)
                      ....+           ..+........+..+.+++|++++|.+.||.+. |...+.......+. +......   ...++
T Consensus       293 l~~sg-----------Y~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~vi  361 (480)
T KOG2563|consen  293 LCPSG-----------YEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVI  361 (480)
T ss_pred             ccccc-----------CCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEe
Confidence            11110           110111223445567788999999999999865 44444433333332 1111111   11122


Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc----hhhHHHHHHHHHHH
Q 015377          299 LTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH----QTAAILLLEALIVL  374 (408)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~----~~~~~~~~~~~~~i  374 (408)
                      .........++..+..++..-...|.-=+..=++..|+.+..|.+.+++-+++.+.+.+..+    .+..-+.++..+++
T Consensus       362 v~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l  441 (480)
T KOG2563|consen  362 VFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALL  441 (480)
T ss_pred             hhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHH
Confidence            22222233344456667666677777656667899999999999988888888877665544    33344566677778


Q ss_pred             HHHHHHhcccccCCcccc
Q 015377          375 SVVVILLIPFETKGKELV  392 (408)
Q Consensus       375 ~~~~~~~~~~et~~~~~~  392 (408)
                      ..+++.++.|+-|.+..+
T Consensus       442 ~~~lva~~r~~y~R~~~e  459 (480)
T KOG2563|consen  442 GAILVAFFRPDYRRLRAE  459 (480)
T ss_pred             HHHHHhhhhhhHHhHhhh
Confidence            888888888776655444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.83  E-value=6.7e-08  Score=94.42  Aligned_cols=140  Identities=19%  Similarity=0.085  Sum_probs=88.5

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh--h-HHHHHHHHHHHHHhhhhhhhhhhhccc
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS--N-ILLTALLSGARMFSMGTFIIANIFAPE  323 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~e  323 (408)
                      ....+..++..++.++.|+++||+|||+.++.+.++..+.........+  . .......+...+......+....+.+|
T Consensus        75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~  154 (481)
T TIGR00879        75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSE  154 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHc
Confidence            3444556777889999999999999999998876665554333322111  1 111112222222223334566788899


Q ss_pred             ccCCchhhHHHhHHHHhhhHhHhhHHHHH---HHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          324 IYPTSMRSTGAGVAYAVGRIGGMVCPLVA---VGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       324 l~p~~~R~~a~gi~~~~~~~~~~~~p~~~---~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      .+|.+.|+++.++.+....+|..++|.+.   ....+..++...+.+.+...++.. +..++.||+.
T Consensus       155 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~-~~~~~l~~~~  220 (481)
T TIGR00879       155 IAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLF-LGLFFLPESP  220 (481)
T ss_pred             cCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHH-HHHhcCCCCh
Confidence            99999999999999999999999998876   322233344455655444444443 4445556753

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.83  E-value=3.9e-07  Score=87.08  Aligned_cols=134  Identities=10%  Similarity=-0.045  Sum_probs=87.1

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      .....+...+..++.|.++||+|||++++.+..+..+.........+.  . ..............+....+.+|++|.+
T Consensus        44 ~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~--~-~~r~l~G~~~a~~~pa~~a~i~~~~~~~  120 (393)
T PRK11195         44 QMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP--L-LAYGLVGIGAAAYSPAKYGILTELLPGE  120 (393)
T ss_pred             HHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            334446667788999999999999999988776655433332222221  1 1112222333344567788899999999


Q ss_pred             hhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          329 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       329 ~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      .|+++.|+......++..++|.+.+.+.+.. ...++.+.+.+.+++. +..+..||.+
T Consensus       121 ~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~~-~~~~~l~~~~  177 (393)
T PRK11195        121 KLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLAA-LFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhcCCCCc
Confidence            9999999999998899999999888776643 3333444333333343 3345556654

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.82  E-value=1.1e-07  Score=93.01  Aligned_cols=136  Identities=10%  Similarity=0.016  Sum_probs=95.1

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL--QSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      ...++..++.+.+|+++||+|||+.+..+.++.++........  .+.......-+...+.....++....+.+|.+|++
T Consensus        84 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~  163 (465)
T TIGR00894        84 SHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK  163 (465)
T ss_pred             HHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHH
Confidence            3446778899999999999999999988776665544333221  11111111112222222334466778889999999


Q ss_pred             hhhHHHhHHHHhhhHhHhhHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          329 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       329 ~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      .|+++.|+.+....+|.+++|.+.+.+.+. .+....|.+.++..++..++.+++++|.
T Consensus       164 ~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       164 ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999988877766 3666778887777776666666666553

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.81  E-value=2.2e-07  Score=89.54  Aligned_cols=140  Identities=15%  Similarity=0.112  Sum_probs=87.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---h-hhhh-HHHHHHHHHHHHHhhhhhhhhhhhc
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---T-LQSN-ILLTALLSGARMFSMGTFIIANIFA  321 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  321 (408)
                      .......+..+++.++.|.++||+|||+.+..+..+.++....+.   . ..+. .......+...++.....+....+.
T Consensus        56 ~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~  135 (417)
T PRK10489         56 LSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAAT  135 (417)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            334444567778899999999999999988766554444322221   1 1111 1111111111122112234456678


Q ss_pred             ccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          322 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       322 ~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      +|.+|.+.|+++.++.+....+|..++|.+.+.+.+..+..+.+.+.+...+++.+....+ ||++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~  200 (417)
T PRK10489        136 PALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRL-PALP  200 (417)
T ss_pred             hhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC-CCCC
Confidence            8999999999999999998899999999988877665555566666555555555544444 4543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.81  E-value=2.9e-07  Score=89.81  Aligned_cols=130  Identities=15%  Similarity=0.021  Sum_probs=85.1

Q ss_pred             hhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHhhhhhhhhhhhcccccCCchhhH
Q 015377          254 FAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALL-SGARMFSMGTFIIANIFAPEIYPTSMRST  332 (408)
Q Consensus       254 ~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~el~p~~~R~~  332 (408)
                      +...++..+.|+++||+|||+.++.+.++..+..+......+........ ....+...........+..|.+| +.|++
T Consensus        65 ~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~  143 (455)
T TIGR00892        65 AVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPL  143 (455)
T ss_pred             HHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHH
Confidence            44466778899999999999998877666555444333332222111111 11111111112344556678887 78999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccc
Q 015377          333 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  384 (408)
Q Consensus       333 a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  384 (408)
                      +.|+.+....+|+.++|.+.+.+.+..++..+|.+.+++.+++.+...++.+
T Consensus       144 a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~  195 (455)
T TIGR00892       144 ANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP  195 (455)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999888887777767777888888777666555555544

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.80  E-value=4.3e-07  Score=89.48  Aligned_cols=117  Identities=13%  Similarity=0.031  Sum_probs=73.6

Q ss_pred             HHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhhhhhhhhhcccccCCch--hhHHHh
Q 015377          260 LLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQSN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTSM--RSTGAG  335 (408)
Q Consensus       260 ~~~~~~l~dr-~grR~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~--R~~a~g  335 (408)
                      .+++|+++|| +|||+.+..+.++..+....+....+. ...........+......+....+.+|.||.+.  |..+.+
T Consensus        74 ~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~  153 (500)
T PRK09584         74 VAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFT  153 (500)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcch
Confidence            4578999999 599999888766665544333332221 111111111222211223455567899998643  456788


Q ss_pred             HHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 015377          336 VAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSV  376 (408)
Q Consensus       336 i~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~  376 (408)
                      +.+...++|+.++|.+.+++.+..++...|.+.++..+++.
T Consensus       154 ~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        154 MYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            88999999999999999988776666666666554444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.79  E-value=1e-07  Score=93.26  Aligned_cols=137  Identities=15%  Similarity=0.034  Sum_probs=86.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-----LQSNILLTALLSGARMFSMGTFIIANIFAPE  323 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  323 (408)
                      .....+...++.++.|+++||+|||+++..+.++.++.......     ..+.......-....++.....+....+.+|
T Consensus        70 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  149 (467)
T PRK09556         70 GLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITR  149 (467)
T ss_pred             HHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            33445666788999999999999999988776665554433322     1221212122122222222334566678899


Q ss_pred             ccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc---chhhHHHHHHHHHHHHHHHHHhcccc
Q 015377          324 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC---HQTAAILLLEALIVLSVVVILLIPFE  385 (408)
Q Consensus       324 l~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~e  385 (408)
                      .+|.+.|+++.|+....+.+|+.+++.+...+....   +....+.+.+...++..+..+++.+|
T Consensus       150 ~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~  214 (467)
T PRK09556        150 WTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSD  214 (467)
T ss_pred             HcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999998887765544432   23344556666665555555555433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.78  E-value=6.7e-07  Score=86.66  Aligned_cols=137  Identities=20%  Similarity=0.111  Sum_probs=81.3

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSN--------ILLTALLSGARMFSMGTFIIANIFAP  322 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (408)
                      ...++..+|.+++|+++||+|||+.+..+....++.........+.        ......-+...+...+.++....+.+
T Consensus        71 ~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~  150 (432)
T PRK10406         71 AGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMS  150 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHH
Confidence            3345566899999999999999999988877776655444332211        01111111222222334567788899


Q ss_pred             cccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHh--------hhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          323 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV--------TSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       323 el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      |.+|.+.|+.+.++.......|.++++.+...+.        ...++...|.+-++..++. ++.....||++.
T Consensus       151 e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~  223 (432)
T PRK10406        151 EVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQ  223 (432)
T ss_pred             HhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCch
Confidence            9999999999988876655556566554433221        1234555665544444443 333344566543

>TIGR00898 2A0119 cation transport protein

Probab=98.76  E-value=1.9e-07  Score=92.43  Aligned_cols=135  Identities=16%  Similarity=0.098  Sum_probs=91.1

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ...+..++.++|.++.|+++||+|||+.++.+.++..+..+......+........++..+...+..+....+..|.+|.
T Consensus       132 ~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~  211 (505)
T TIGR00898       132 TQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPK  211 (505)
T ss_pred             HHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecCh
Confidence            33444577788999999999999999999887776666554444433322222222333333334467788899999999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      +.|+.+.++......+|.+++|.+...+ .  ++...+.+.++..++..+.. ++.||+
T Consensus       212 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~-~--~wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       212 KQRAIVGTLIQVFFSLGLVLLPLVAYFI-P--DWRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHh-h--HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            9999999998777777888888765433 2  24456666666666665555 455675

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.75  E-value=1.1e-06  Score=86.28  Aligned_cols=136  Identities=19%  Similarity=0.116  Sum_probs=89.5

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hh--hhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TL--QSNILLTALLSGARMFSMGTFIIANIFAPEIY  325 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  325 (408)
                      ...+-.++-.+.+|.++||+.||++++.+-++..+....+.   ..  .+.+....+.+....+.....+.-.++.+|+.
T Consensus        53 a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV  132 (524)
T PF05977_consen   53 ASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELV  132 (524)
T ss_pred             HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33344456678899999999999999887665543322221   11  12222222223333333333466678899999


Q ss_pred             CCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          326 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       326 p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      |.+....|.++.....++..+++|.+.+.++...+....|.+-+.+.++..+.....+++.
T Consensus       133 ~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~  193 (524)
T PF05977_consen  133 PKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP  193 (524)
T ss_pred             cHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            9999999999999999999999999888777766665666665655555555555555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.74  E-value=2.1e-07  Score=92.48  Aligned_cols=133  Identities=17%  Similarity=0.197  Sum_probs=98.0

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchh
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  330 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R  330 (408)
                      +..++..+|.++.|.++||+|||++++.+.++..++.+......+-.....+-++..++..+...+.+.+.+|+++++.|
T Consensus       126 ~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R  205 (521)
T KOG0255|consen  126 LFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQR  205 (521)
T ss_pred             HHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchh
Confidence            44467788999999999999999999998888877766655555544444444555566667778889999999999999


Q ss_pred             hHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          331 STGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       331 ~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      +.+..+ ..+.+.++...|....++..  ++...+.+.....++..+. .+++||.+
T Consensus       206 ~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  206 GLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             hHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            999999 88888888888877776655  3434444444444444333 67776854

>PRK15075 citrate-proton symporter; Provisional

Probab=98.74  E-value=8.8e-07  Score=85.88  Aligned_cols=98  Identities=11%  Similarity=0.062  Sum_probs=63.8

Q ss_pred             hhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHH--------HHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          256 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNIL--------LTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       256 ~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ..+|.++.|+++||+|||+.++.+..+.++.........+...        ....-+...+......+....+.+|.+|+
T Consensus        69 ~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~  148 (434)
T PRK15075         69 RPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP  148 (434)
T ss_pred             hhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence            3568899999999999999998887766655444443322111        01111111111112234456789999999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHH
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAV  353 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~  353 (408)
                      +.|+++.++.....+++..+++.+..
T Consensus       149 ~~rg~~~~~~~~~~~~g~~~g~~~g~  174 (434)
T PRK15075        149 GRKGFYTSWQSASQQVAVVFAALLGY  174 (434)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988887777666665544

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.73  E-value=1.3e-06  Score=83.11  Aligned_cols=112  Identities=13%  Similarity=-0.022  Sum_probs=73.6

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015377          246 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIY  325 (408)
Q Consensus       246 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  325 (408)
                      ........++..++.++.++++||+|||+.+..+.....+........++............+......+.......+..
T Consensus        44 G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~  123 (381)
T PRK03633         44 GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSG  123 (381)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34444555777889999999999999999998877766655444443333222222222222221122233334456778


Q ss_pred             CCchhhHHHhHHHHhhhHhHhhHHHHHHHHhh
Q 015377          326 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  357 (408)
Q Consensus       326 p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~  357 (408)
                      |.+.|+++.|..+....+|..++|.+.+.+.+
T Consensus       124 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633        124 TSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88899999999999999999999988776544

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.72  E-value=3.9e-07  Score=89.46  Aligned_cols=138  Identities=14%  Similarity=0.042  Sum_probs=86.2

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh---------hhhH--H-HHHHHHHHHHHhhhhhhh
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---------QSNI--L-LTALLSGARMFSMGTFII  316 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~---------~~~~--~-~~~~~~~~~~~~~~~~~~  316 (408)
                      .....++..++.++.|+++||+|||++++.+..+..+..+.....         .+..  . ....-+...+...+..+.
T Consensus        61 ~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~  140 (479)
T PRK10077         61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASML  140 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhH
Confidence            344457778899999999999999999988766654433322211         1111  1 111112222233344566


Q ss_pred             hhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHh--------hhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          317 ANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV--------TSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       317 ~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~--------~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      ...+.+|.+|.+.|+++.|+......+|..+++.+...+.        +..++...+.+.++..++..+. .++.||+.
T Consensus       141 ~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~  218 (479)
T PRK10077        141 SPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETP  218 (479)
T ss_pred             HHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCc
Confidence            7788899999999999999988887788887776543332        1234455666655555555444 45557764

>TIGR00897 2A0118 polyol permease family

Probab=98.72  E-value=6.6e-07  Score=85.86  Aligned_cols=114  Identities=11%  Similarity=0.019  Sum_probs=70.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhhhhHHHHH-HHHHHHHHhhhhhhhhhhhcc
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQSNILLTA-LLSGARMFSMGTFIIANIFAP  322 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  322 (408)
                      .......+...++.++.|.++||+|||+.+..+..+.++......   ...++..... .............+....+..
T Consensus        52 ~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~  131 (402)
T TIGR00897        52 SAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVV  131 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHH
Confidence            334455577788999999999999999999887666655433221   1111221111 111111111112233345567


Q ss_pred             cccCCchhhHHHhHHHHhhhHhH-hhHHHHHHHHhhhcc
Q 015377          323 EIYPTSMRSTGAGVAYAVGRIGG-MVCPLVAVGLVTSCH  360 (408)
Q Consensus       323 el~p~~~R~~a~gi~~~~~~~~~-~~~p~~~~~l~~~~~  360 (408)
                      |.+|++.|+++.|+.++...+|. .++|.+.+.+.+..+
T Consensus       132 ~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g  170 (402)
T TIGR00897       132 YNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG  170 (402)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            88999999999999999988885 577877666655444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.71  E-value=9.1e-07  Score=84.73  Aligned_cols=125  Identities=12%  Similarity=-0.092  Sum_probs=75.8

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhhh----hH-HHHHHHHHHHHHhhhhhhhhh
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQS----NI-LLTALLSGARMFSMGTFIIAN  318 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~~~----~~-~~~~~~~~~~~~~~~~~~~~~  318 (408)
                      .......+...++.++.|.++||+|||+++..+.++..+..+...   ...+    .. .....-+..........+...
T Consensus        55 ~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  134 (399)
T PRK05122         55 LVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSI  134 (399)
T ss_pred             HHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHH
Confidence            334444566778889999999999999999887765544322211   1111    01 111111111111122234445


Q ss_pred             hhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHH
Q 015377          319 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEAL  371 (408)
Q Consensus       319 ~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~  371 (408)
                      .+..|.+|.+.|+++.++.......|..++|.+.+.+.+..+....+.+.+..
T Consensus       135 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~  187 (399)
T PRK05122        135 LWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLL  187 (399)
T ss_pred             HHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            66689999999999999988777788888888877666655544444443333

>TIGR00889 2A0110 nucleoside transporter

Probab=98.69  E-value=6.7e-08  Score=93.10  Aligned_cols=116  Identities=17%  Similarity=0.153  Sum_probs=91.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhh-h---hHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHH-HHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFS-P---NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFS-TFWTF   74 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~-~---~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~-~~~~~   74 (408)
                      |.|||+.+..+.++..++..+.... +   ++..+++.+++.|++.+... ....++.|.+|+++||+..++.+ ..+.+
T Consensus       277 r~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~l  356 (418)
T TIGR00889       277 RFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGF  356 (418)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhh
Confidence            4699999999999888776555553 2   35678889999999987653 44567899999999999999997 67889


Q ss_pred             HHHHHHHHHhHhccc------cchHHHHHHhhHHHHHH-HHHHHhccCc
Q 015377           75 GSVSEAALAWIVMPI------LTWRWLLALSAIPAFVL-LIFIVFMPES  116 (408)
Q Consensus        75 G~~l~~~l~~~~~~~------~~Wr~~f~i~~i~~~~~-~~~~~~lpES  116 (408)
                      |..+++.++..+.+.      +|||..|.+.++..++. .+..+++||+
T Consensus       357 g~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       357 GSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            999999998877654      57999999887776554 4456667776

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.68  E-value=1.8e-06  Score=81.84  Aligned_cols=138  Identities=16%  Similarity=0.037  Sum_probs=83.6

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCch
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTI-MFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  329 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~  329 (408)
                      ...+...+...+.|.++||.|||+.++. +.....+.........+...................+....+..|..|.+.
T Consensus        41 ~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~  120 (375)
T TIGR00899        41 GSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTG  120 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc
Confidence            3345566777888999999998886554 333333332322332222211111111111112233445566678888777


Q ss_pred             hhHH--HhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          330 RSTG--AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       330 R~~a--~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      |+.+  .+.....+.+|..++|.+.+.+.+..++...+.+.+.+.++..+...++.||.+.
T Consensus       121 ~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T TIGR00899       121 REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPR  181 (375)
T ss_pred             hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            7655  5777777778889999888877766666677888887777777776665666543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09952 shikimate transporter; Provisional

Probab=98.67  E-value=2.3e-06  Score=83.11  Aligned_cols=135  Identities=16%  Similarity=0.042  Sum_probs=81.6

Q ss_pred             HHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhH----H----HHHHHHHHHHHhhhhhhhhhhhccc
Q 015377          252 TSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI----L----LTALLSGARMFSMGTFIIANIFAPE  323 (408)
Q Consensus       252 ~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~e  323 (408)
                      ..+...+|.++.|+++||+|||+.+..+..+.++......+..+..    .    ....-+...+...+.++....+.+|
T Consensus        73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e  152 (438)
T PRK09952         73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVE  152 (438)
T ss_pred             HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence            3455678889999999999999999888777766555444433211    1    1111112222222334556778899


Q ss_pred             ccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhh--------hcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          324 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT--------SCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       324 l~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      .+|.+.|+...+.......+|..+++.+...+..        ..++..+|++.++..++. +......||++
T Consensus       153 ~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~  223 (438)
T PRK09952        153 SAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESA  223 (438)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence            9999999998888877777777776554443321        234445665554443332 33334456654

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.67  E-value=9.8e-07  Score=84.38  Aligned_cols=129  Identities=12%  Similarity=-0.021  Sum_probs=84.0

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ......++..++.+..++++||+|||+++..+..+.++........++.......-.+..+......+....+..|.+| 
T Consensus        49 ~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-  127 (393)
T PRK09705         49 LTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-  127 (393)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-
Confidence            3334446677888999999999999999999888887776665554433322222222222222233444556788888 


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc-chhhHHHHHHHHHHHHHH
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVV  377 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~  377 (408)
                      +.|+.+.|+.......|+.+++.+.+.+.+.. ++...+.+++...++...
T Consensus       128 ~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        128 QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALF  178 (393)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            67999999998888888888888777666543 344455555554444433

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.66  E-value=1.8e-06  Score=79.81  Aligned_cols=147  Identities=17%  Similarity=0.127  Sum_probs=101.2

Q ss_pred             cchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hhhhhhhhh
Q 015377          241 QDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMF--SMGTFIIAN  318 (408)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  318 (408)
                      +..+.+....+..+.+.+.-+.-+++.||+|.|+....+.++..+-.+.+.+.........++.+..+.  ..+.+.+.-
T Consensus        47 S~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m  126 (417)
T COG2223          47 SEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGM  126 (417)
T ss_pred             CHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehccc
Confidence            345566777788888888899999999999999988887766555333333322111001111111111  234456677


Q ss_pred             hhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc---hhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          319 IFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH---QTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       319 ~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      ...++-||++.+++|.|+.. .|++|..+..++.|.+....+   .+....++....++..+...+...|...
T Consensus       127 ~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~  198 (417)
T COG2223         127 PNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE  198 (417)
T ss_pred             ccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence            78899999999999999999 999999998888887777666   5556667777777766666666655433

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.66  E-value=1.1e-05  Score=78.02  Aligned_cols=112  Identities=18%  Similarity=0.203  Sum_probs=72.4

Q ss_pred             chhH-HHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCC--CcchhHHHHHHHHHHHH
Q 015377            4 GRMS-ILGGALVTFVAGLLSAFSP----NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPP--SNRGKWMVVFSTFWTFG   75 (408)
Q Consensus         4 Rr~~-~~~~~~~~~~~~~~~~~~~----~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~--~~Rg~~~~~~~~~~~~G   75 (408)
                      |||. ++++.++...+.+..+..+    +.....+.=++..+|.... .+.-..++|....  +.||...+.......+|
T Consensus        57 rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G  136 (433)
T PF03092_consen   57 RRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVG  136 (433)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHH
Confidence            4444 4555555544444444433    4555555556666665544 3344566677633  33788888888889999


Q ss_pred             HHHHHHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccC
Q 015377           76 SVSEAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPE  115 (408)
Q Consensus        76 ~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpE  115 (408)
                      .+++..+++.+.+..++|+.|.+.++...+. +...+..+|
T Consensus       137 ~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  137 SLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            9999999988888889999999887655554 444455555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.65  E-value=2e-07  Score=85.12  Aligned_cols=141  Identities=18%  Similarity=0.142  Sum_probs=105.6

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCch
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSM  329 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~  329 (408)
                      ..-++.+++...+.|.+.||+|+|..+++++++.....+.+.+.++.......=................+.++.||.+.
T Consensus       113 askA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~  192 (464)
T KOG3764|consen  113 ASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN  192 (464)
T ss_pred             HHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch
Confidence            33457778888999999999999999999888776655555544432211111112222223334556778899999976


Q ss_pred             -hhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCcc
Q 015377          330 -RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  390 (408)
Q Consensus       330 -R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~  390 (408)
                       |+++.|+.-++-.+|-.++|.+.+.+.+..|...+|+++++++++.....++..+.++.++
T Consensus       193 er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~  254 (464)
T KOG3764|consen  193 ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP  254 (464)
T ss_pred             hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence             6999999999999999999998888888888889999999999999999888886655544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.64  E-value=3.2e-06  Score=81.28  Aligned_cols=111  Identities=13%  Similarity=0.005  Sum_probs=73.6

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015377          246 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---QSNILLTALLSGARMFSMGTFIIANIFAP  322 (408)
Q Consensus       246 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (408)
                      ........++..++.+..+++.||+|||+.+..+..+.++........   .+........+..........+....+..
T Consensus        41 g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~  120 (410)
T TIGR00885        41 ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYIL  120 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHH
Confidence            344455567778899999999999999999988877665544332211   11111111122222222222344456677


Q ss_pred             cccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHh
Q 015377          323 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  356 (408)
Q Consensus       323 el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~  356 (408)
                      |+.|.+.|++..++.+.+..+|+.++|.+...+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885       121 VMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999998877664

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.64  E-value=2.2e-05  Score=73.68  Aligned_cols=116  Identities=16%  Similarity=0.203  Sum_probs=94.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHH
Q 015377            3 EGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAAL   82 (408)
Q Consensus         3 gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l   82 (408)
                      |-|+++++..+-..+...+..+.++...+-+.-+.-|++.+...+.++|+--..|+++-.++.+....+.-.|..+++++
T Consensus        69 ~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~l  148 (412)
T PF01770_consen   69 RYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLL  148 (412)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888888888888888889999999999999999999999887777777667788888889999999999999999988


Q ss_pred             HhHhcc--ccchHHHHHHhhHHHHHHHHHHHhccCcch
Q 015377           83 AWIVMP--ILTWRWLLALSAIPAFVLLIFIVFMPESPR  118 (408)
Q Consensus        83 ~~~~~~--~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~  118 (408)
                      +..+..  ..+.+.+.++......+.++..+++|..++
T Consensus       149 gQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  149 GQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            887654  556777877776655555666677887654

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.63  E-value=2.1e-07  Score=84.52  Aligned_cols=104  Identities=15%  Similarity=0.123  Sum_probs=77.7

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhH
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  332 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~  332 (408)
                      ++.+.+.+...|.++||.|||+++.+|.+...+....+....+-...+..=++... ..+..++.-++.+|+++.+.|+.
T Consensus        78 ~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi-~kgnl~v~rAiisdV~sek~r~l  156 (451)
T KOG2615|consen   78 SILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGI-FKGNLSVIRAIISDVVSEKYRPL  156 (451)
T ss_pred             HHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCchHHHHHHHHhhcChhhccc
Confidence            46677888999999999999999999888887765554443321111111122222 24555788899999999999999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhh
Q 015377          333 GAGVAYAVGRIGGMVCPLVAVGLVT  357 (408)
Q Consensus       333 a~gi~~~~~~~~~~~~p~~~~~l~~  357 (408)
                      +.+.......+|-+++|.+.+++..
T Consensus       157 ~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  157 GMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             eeeeeehhhhcchhhcchhhhHHHh
Confidence            9999999999999999998887655

>PRK12382 putative transporter; Provisional

Probab=98.62  E-value=3.8e-06  Score=80.24  Aligned_cols=114  Identities=13%  Similarity=-0.130  Sum_probs=70.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hh-----hhhHHHHHHHHHHHHHhhhhhhhhhh
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TL-----QSNILLTALLSGARMFSMGTFIIANI  319 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (408)
                      ......+...++.+..|+++||+|||+.++.+.+...+..+...   ..     .+.......-...........+....
T Consensus        56 ~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~  135 (392)
T PRK12382         56 AVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALT  135 (392)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444566778889999999999999998887665544322111   11     11111111111111111112233455


Q ss_pred             hcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcch
Q 015377          320 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ  361 (408)
Q Consensus       320 ~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~  361 (408)
                      +..|.+|.+.|+++.|+.......+..++|.+.+.+.+..+.
T Consensus       136 ~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~  177 (392)
T PRK12382        136 WGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF  177 (392)
T ss_pred             HHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence            668999999999999998877778888888887766655443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.59  E-value=4.3e-06  Score=91.09  Aligned_cols=136  Identities=15%  Similarity=-0.089  Sum_probs=83.5

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHH--HHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVC--IFLLPLVTL-QSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      +..+..++.++++|.++||+|||+++........  .....+... .+.+......++...+.....+....+..|++|.
T Consensus        60 ~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~  139 (1140)
T PRK06814         60 VFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNK  139 (1140)
T ss_pred             HHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc
Confidence            3345567788899999999999997633211111  111111111 2222222233333333334457778899999999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      +.|+.+.|+.++...+|..++|.+.+.+....+....+ +.++...+..++..+..|+++
T Consensus       140 ~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        140 DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence            99999999999999999999999998877765544444 333333333333344444543

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.59  E-value=1.7e-07  Score=90.52  Aligned_cols=116  Identities=14%  Similarity=0.065  Sum_probs=92.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHH-HHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV-FSTFWTFGSVS   78 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~l   78 (408)
                      |.|||+.+.++.++..++.++.++++|...+++.+++.|++.+.. .....++.|..|++.|+...+. ++....+|.++
T Consensus       288 r~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~i  367 (420)
T PRK09528        288 RIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVF  367 (420)
T ss_pred             HhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHH
Confidence            578999999999988888888889999999999999999887664 3445678899999999987654 67778899999


Q ss_pred             HHHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCc
Q 015377           79 EAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPES  116 (408)
Q Consensus        79 ~~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpES  116 (408)
                      ++.+...+.+..|||..|.+.++..++. .+.++.+++.
T Consensus       368 g~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        368 LSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999988888889999999877665544 3444444443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.58  E-value=4.4e-06  Score=91.16  Aligned_cols=109  Identities=17%  Similarity=0.001  Sum_probs=73.4

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP  326 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p  326 (408)
                      .+..+..+++.+++|+++||+|||++++.+.++..+..+...   ...+........++..+......+....+.+|++|
T Consensus        54 ~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  133 (1146)
T PRK08633         54 ALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVG  133 (1146)
T ss_pred             HHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcC
Confidence            344466678889999999999999998876654433322211   11221222222222222222334566788999999


Q ss_pred             CchhhHHHhHHHHhhhHhHhhHHHHHHHHhhh
Q 015377          327 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS  358 (408)
Q Consensus       327 ~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~  358 (408)
                      .+.|+++.|+......+|.+++|.+.+.+...
T Consensus       134 ~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        134 KENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             cccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999888776654

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.57  E-value=6.2e-06  Score=81.18  Aligned_cols=129  Identities=19%  Similarity=0.230  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHhhh-----chHHHHH-HHHHHHHHHHHHHHhhh--hhH-HHHHHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          258 PGLLTAALLVDRV-----GRKLSMT-IMFIFVCIFLLPLVTLQ--SNI-LLTALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       258 ~g~~~~~~l~dr~-----grR~~~~-~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      .+.++.+.++||+     |||+..+ .+.+...+....+.+..  ++. ..........++..........+.+|.+|.+
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~  139 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE  139 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence            5778999999999     9998644 44444434333332321  121 1111222222233333455678889999999


Q ss_pred             hhhHHHhHHHHhhhHhHhhHHHHHHHHhh-hcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          329 MRSTGAGVAYAVGRIGGMVCPLVAVGLVT-SCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       329 ~R~~a~gi~~~~~~~~~~~~p~~~~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      .|+++.++.....++|.++++.+...+.+ ..++...|.+.++..++..+..++ .||++
T Consensus       140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~  198 (491)
T PRK11010        140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT  198 (491)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence            99999999999999999999888777766 346667787878777776555554 46764

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.56  E-value=3.1e-06  Score=83.45  Aligned_cols=125  Identities=15%  Similarity=0.107  Sum_probs=74.5

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLT-ALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      ....+...++..+.|.++|.+|||..++.+.++..+-.+.....++-.... ...+.+ . ..+.........+|+.|.+
T Consensus        85 ~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G-v-gaG~~~~~~~~isEl~p~k  162 (599)
T PF06609_consen   85 TAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG-V-GAGVQELAALAISELVPNK  162 (599)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH-H-hhHHHHHHHHHHHHhcccc
Confidence            334456667788899999999999999888777666554444333221111 111111 1 1233344566689999999


Q ss_pred             hhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHH
Q 015377          329 MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSV  376 (408)
Q Consensus       329 ~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~  376 (408)
                      .|..+.++.....-+....+|.+...+....++.+.|.+..+...+++
T Consensus       163 ~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~  210 (599)
T PF06609_consen  163 WRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIAL  210 (599)
T ss_pred             hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHH
Confidence            999888777654434444566665444333344455555554444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.54  E-value=7.8e-05  Score=71.99  Aligned_cols=113  Identities=21%  Similarity=0.263  Sum_probs=87.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCc---chhhhHHHhhhcCCCcchhHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGS---GHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSV   77 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~---~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~   77 (408)
                      +.|||..+.+......+...+..+.. ++.++    +.|+..|.   .....+|+++....++|....++.+..+..+..
T Consensus        88 ~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~  162 (463)
T KOG2816|consen   88 RYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLV  162 (463)
T ss_pred             hhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHh
Confidence            47999999999998888887776666 33333    66654443   235567899999999999999999998999999


Q ss_pred             HHHHHHhHhccccchHHHHHHhhHHHHHH-HHHHHhccCcch
Q 015377           78 SEAALAWIVMPILTWRWLLALSAIPAFVL-LIFIVFMPESPR  118 (408)
Q Consensus        78 l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~  118 (408)
                      +++.++.......+.=.+|.+..+..++. .+...++|||-.
T Consensus       163 ~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~  204 (463)
T KOG2816|consen  163 IGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ  204 (463)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC
Confidence            99988888777778888888888776665 456778999843

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.51  E-value=8.4e-06  Score=77.90  Aligned_cols=114  Identities=19%  Similarity=0.263  Sum_probs=82.6

Q ss_pred             hhHHHHHHHHHHHHHHHH-hh---hh-hHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            5 RMSILGGALVTFVAGLLS-AF---SP-NYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         5 r~~~~~~~~~~~~~~~~~-~~---~~-~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |+-++.+.++.+++.++- +.   .+ ..+.++++|++.|+|.|...+.=.|++...-.++|-++++....+..+|.++|
T Consensus       102 k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilG  181 (488)
T KOG2325|consen  102 KKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILG  181 (488)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHh
Confidence            666788888888888765 22   23 56789999999999999877777789998889999999999888888899988


Q ss_pred             HHHHhHhcc--ccc-----------hHHHHHHhhHHHHHH-HHHHHhccCcch
Q 015377           80 AALAWIVMP--ILT-----------WRWLLALSAIPAFVL-LIFIVFMPESPR  118 (408)
Q Consensus        80 ~~l~~~~~~--~~~-----------Wr~~f~i~~i~~~~~-~~~~~~lpESp~  118 (408)
                      |.++....+  ..|           +-.+-|+..+..++. ++..+++.|.++
T Consensus       182 p~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~  234 (488)
T KOG2325|consen  182 PTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR  234 (488)
T ss_pred             HHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence            888766532  111           334555665555554 334556677554

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.50  E-value=3e-05  Score=74.18  Aligned_cols=133  Identities=14%  Similarity=0.030  Sum_probs=75.6

Q ss_pred             hhhHHHHHHHHHHhhhchHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhh--
Q 015377          255 AELPGLLTAALLVDRVGRKLSMT-IMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRS--  331 (408)
Q Consensus       255 ~~~~g~~~~~~l~dr~grR~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~--  331 (408)
                      ..+.+.+.+++ +||.|||+.++ .+.....+.........+...................+....+..|..|.+-|.  
T Consensus        64 ~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (393)
T PRK15011         64 GILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAV  142 (393)
T ss_pred             HHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHH
Confidence            44456666666 99999998754 333333332222222222221111111111111222344455556666665453  


Q ss_pred             HHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          332 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       332 ~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      ...++.+....+|.+++|.+.+.+.+..++...|.+.+..+++..+...+..||.+.
T Consensus       143 ~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  199 (393)
T PRK15011        143 MFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK  199 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            334677777889999999998887776677777877777777776666666667643

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.50  E-value=2.9e-06  Score=80.66  Aligned_cols=132  Identities=19%  Similarity=0.141  Sum_probs=78.9

Q ss_pred             hhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhH----H----HHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015377          255 AELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNI----L----LTALLSGARMFSMGTFIIANIFAPEIYP  326 (408)
Q Consensus       255 ~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~el~p  326 (408)
                      ...++.++.|+++||+|||+.+..+.++..+.........+..    .    .....+...+......+....+.+|.+|
T Consensus        47 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~  126 (394)
T TIGR00883        47 ARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP  126 (394)
T ss_pred             HhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC
Confidence            3356888999999999999999887776665544433322211    0    1111111111112223455678899999


Q ss_pred             CchhhHHHhHHHHhhhHhHhhHHHHHHHHhh--------hcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          327 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT--------SCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       327 ~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      .+.|+...++......+|.++++.+...+..        ..++..++.+.+.+.+++... ....||++
T Consensus       127 ~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~  194 (394)
T TIGR00883       127 PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL-RRNLEETP  194 (394)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH-HHhcCCCh
Confidence            9999999999998888888888876543321        223344555544444444333 33334543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.49  E-value=2.3e-07  Score=86.54  Aligned_cols=143  Identities=13%  Similarity=0.020  Sum_probs=98.8

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchh
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  330 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R  330 (408)
                      ...+...+.+.+.|++.||.+|+.++..+..+-.+..+...+...-+.....-......-....++...+.+|.||...|
T Consensus        76 vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~R  155 (493)
T KOG1330|consen   76 VFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKR  155 (493)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhh
Confidence            33456677889999999999999999998887777666555442222222211122222234456778889999999999


Q ss_pred             hHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 015377          331 STGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKGKELVN  393 (408)
Q Consensus       331 ~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~  393 (408)
                      +++.++-|....+|++++-.....+-...+ +.+.+..-+++.++.+++..++.+|...+.-+|
T Consensus       156 s~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~  219 (493)
T KOG1330|consen  156 SRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE  219 (493)
T ss_pred             hHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence            999999999998887776443332222222 456777888888888888888888876544444

>TIGR00896 CynX cyanate transporter

Probab=98.48  E-value=6.4e-06  Score=77.55  Aligned_cols=124  Identities=12%  Similarity=-0.005  Sum_probs=73.8

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ...+..+...++.+..++++||+|||+.+..+.....+..... ...+........+...+...........+..|.+| 
T Consensus        40 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-  117 (355)
T TIGR00896        40 LTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-  117 (355)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-
Confidence            3344456777889999999999999999887765544433322 22222211111111111111112334456678887 


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc--hhhHHHHHHHHHH
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH--QTAAILLLEALIV  373 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~--~~~~~~~~~~~~~  373 (408)
                      +.|+++.|+.+....+|..+++.+.+.+.+..+  +...+.+.++..+
T Consensus       118 ~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896       118 QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            579999999998888888888887776655432  2334444444333

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10133 L-fucose transporter; Provisional

Probab=98.48  E-value=2.7e-05  Score=75.50  Aligned_cols=144  Identities=13%  Similarity=0.047  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHH
Q 015377          201 LLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF  280 (408)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~  280 (408)
                      .+..+++...+.........|.+....           +.+............++..++.+..+.++||+|||+.+..+.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~p~i~~~~-----------~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~   98 (438)
T PRK10133         30 LLCSLFFLWAVANNLNDILLPQFQQAF-----------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            344444444444444555556554322           122233344445556778889999999999999999998887


Q ss_pred             HHHHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHH
Q 015377          281 IFVCIFLLPLV---TLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  355 (408)
Q Consensus       281 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l  355 (408)
                      .+..+..+...   ...+........+...+...........+..|..|.+.|....++.+.+..+|..++|.+...+
T Consensus        99 ~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133         99 FLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76665443321   1122122212222222222223344455667887777777788888888888998888776543

>TIGR00901 2A0125 AmpG-related permease

Probab=98.47  E-value=6.1e-06  Score=77.70  Aligned_cols=128  Identities=23%  Similarity=0.232  Sum_probs=81.2

Q ss_pred             HHHHHHHHhhh-----chHHHH-HHHHHHHHHHHHHHHhhh--hhH-HHHHHHHHHHHHhhhhhhhhhhhcccccCCchh
Q 015377          260 LLTAALLVDRV-----GRKLSM-TIMFIFVCIFLLPLVTLQ--SNI-LLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  330 (408)
Q Consensus       260 ~~~~~~l~dr~-----grR~~~-~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R  330 (408)
                      .++.|.++||+     |||+.+ +.+.+..++....+.+..  ... ...........+.....+....+.+|.+|.+.|
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r  117 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL  117 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence            67899999997     898875 444444444433333321  111 111111112222222234557788999999999


Q ss_pred             hHHHhHHHHhhhHhHhhHHHHHHHHhhhcc--------hhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          331 STGAGVAYAVGRIGGMVCPLVAVGLVTSCH--------QTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       331 ~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      +.+.|+......+|.++++.+...+....+        +...+.+.+++.++..+...+..||.+
T Consensus       118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            999999998888999989888776665555        555677777766666656565566754

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.47  E-value=1.9e-05  Score=76.48  Aligned_cols=141  Identities=12%  Similarity=0.011  Sum_probs=85.1

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHh----hhchHHHHHHHHH-HHHHHHHHHHhhhhh-------------HH----HHHHHH
Q 015377          247 INVFITSFAELPGLLTAALLVD----RVGRKLSMTIMFI-FVCIFLLPLVTLQSN-------------IL----LTALLS  304 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~d----r~grR~~~~~~~~-~~~~~~~~~~~~~~~-------------~~----~~~~~~  304 (408)
                      ....+..+.+++...+.|.++|    |+|||+.++.... ...+.+..+.+..+.             ..    ....+.
T Consensus        43 ~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~  122 (477)
T TIGR01301        43 IIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFW  122 (477)
T ss_pred             HHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHH
Confidence            3344556777888899999999    5999999876433 333333333221110             00    011111


Q ss_pred             HHHHHhhhhhhhhhhhcccccCCchh--hHHHhHHHHhhhHhHhhHHHHHHHH--hhh--------c-----chhhHHHH
Q 015377          305 GARMFSMGTFIIANIFAPEIYPTSMR--STGAGVAYAVGRIGGMVCPLVAVGL--VTS--------C-----HQTAAILL  367 (408)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~el~p~~~R--~~a~gi~~~~~~~~~~~~p~~~~~l--~~~--------~-----~~~~~~~~  367 (408)
                      ..-+..........++.+|+.|.+.|  ..+.++.+....+|+++++.+....  .+.        .     +....|++
T Consensus       123 lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i  202 (477)
T TIGR01301       123 ILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLI  202 (477)
T ss_pred             HHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHH
Confidence            11122223334567789999999876  5788888888888888887765432  110        0     12345666


Q ss_pred             HHHHHHHHHHHHHhcccccC
Q 015377          368 LEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       368 ~~~~~~i~~~~~~~~~~et~  387 (408)
                      -+++.+++.++..+..+|..
T Consensus       203 ~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       203 DIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HHHHHHHHHHHHeeeeeccC
Confidence            66777788888888888864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PTZ00207 hypothetical protein; Provisional

Probab=98.43  E-value=3.2e-05  Score=76.69  Aligned_cols=125  Identities=11%  Similarity=0.139  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh-----hhHHHH-HHHHHHHHHhhhhhhhhhhhcccccCCchhhH
Q 015377          259 GLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ-----SNILLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMRST  332 (408)
Q Consensus       259 g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~  332 (408)
                      ..+.+|++.||+|||+++..+.++..+..+......     .+.... .............++.......+.|| +.|++
T Consensus        77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~  155 (591)
T PTZ00207         77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA  155 (591)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence            455689999999999999988777766544443321     111111 11111112211223344556678897 67999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccc
Q 015377          333 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFE  385 (408)
Q Consensus       333 a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~e  385 (408)
                      +.|+......+|+.+.+.+...+.. .+....+++.++..++..++.+.+.++
T Consensus       156 a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~  207 (591)
T PTZ00207        156 VVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRL  207 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence            9999999999988754444443333 233345566666665555555554433

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.43  E-value=2.5e-05  Score=74.78  Aligned_cols=138  Identities=14%  Similarity=0.127  Sum_probs=77.1

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhh---hhHHHHHHH--HHHHHHhhhhhhhh
Q 015377          246 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQ---SNILLTALL--SGARMFSMGTFIIA  317 (408)
Q Consensus       246 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~--~~~~~~~~~~~~~~  317 (408)
                      .....+..+...++.+..|+++||+|||+.++.+.....+......   ...   .........  ....+......+..
T Consensus        41 g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  120 (396)
T TIGR00882        41 GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAI  120 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhH
Confidence            3444556677888999999999999999998765444433222111   111   001110000  11111111112223


Q ss_pred             hhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          318 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       318 ~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      ..+..|.-  +.++...|.....+.+|..++|.+.+.+.+ .++..+|.+.+.+.++..+..++..||.
T Consensus       121 ~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       121 EAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             HHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            33334432  223456677888888899999988775544 4566677777777776666666655554

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.37  E-value=5.5e-05  Score=72.21  Aligned_cols=129  Identities=16%  Similarity=0.135  Sum_probs=86.3

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhH
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  332 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~  332 (408)
                      .....+..+.+|+++||+|-|+++..+.+..+++.....+..+.....++-+....+ .++....+.+....+|.+.|++
T Consensus        72 ~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGva-EA~~~A~~syI~~WfP~kER~r  150 (511)
T TIGR00806        72 PYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVT-MAARIAYSSYIFSLVPPSRYQR  150 (511)
T ss_pred             HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHH
Confidence            345567788999999999999999988877777666555543322222222222222 2333367788899999999999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHH--HHHH-HHHHHHHHHHHhcc
Q 015377          333 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAI--LLLE-ALIVLSVVVILLIP  383 (408)
Q Consensus       333 a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~--~~~~-~~~~i~~~~~~~~~  383 (408)
                      +.|+.++...+|.++++.+.+.+ ...+.....  -++. +...++.++.+++|
T Consensus       151 atsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       151 AAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999998888764 334432221  1223 33356666666665

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.33  E-value=1.2e-05  Score=76.29  Aligned_cols=133  Identities=23%  Similarity=0.256  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHhhh--h-hHHHHHHHHHHHHHhhhhh-hhhhhhcccccCC--chhh
Q 015377          259 GLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ--S-NILLTALLSGARMFSMGTF-IIANIFAPEIYPT--SMRS  331 (408)
Q Consensus       259 g~~~~~~l~dr~-grR~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~el~p~--~~R~  331 (408)
                      ..+++||++||+ |+|+.++.+.++..+--+.+....  . ....+.+.+..  +..|.+ +....+..|++|.  ..|-
T Consensus        77 t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~--iG~Gl~K~NiS~llg~ly~~~DprrD  154 (498)
T COG3104          77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALII--VGTGLFKPNISSLLGELYPKDDPRRD  154 (498)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH--hccccccccHHHHHHHhcCCCCcccC
Confidence            457899999996 999988887666554333333221  1 11111111111  222332 4566777899976  3378


Q ss_pred             HHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 015377          332 TGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN  393 (408)
Q Consensus       332 ~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~  393 (408)
                      .++++-++..++|++++|++.+++.+..+++..|...++-+.++++..++.++..++....+
T Consensus       155 ~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~  216 (498)
T COG3104         155 GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVP  216 (498)
T ss_pred             CCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCC
Confidence            89999999999999999999998887777777888888888888777777765555554443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.32  E-value=0.00029  Score=67.04  Aligned_cols=110  Identities=21%  Similarity=0.207  Sum_probs=90.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCc--chhHHHHHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSP--NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN--RGKWMVVFSTFWTFGS   76 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~   76 (408)
                      .|+|+++.++.++..++-++.+...  +...++++=.+.++|.|.. +...+.+.|..|++.  |=...+++..+.++|+
T Consensus        89 LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs  168 (498)
T COG3104          89 LGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGS  168 (498)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHH
Confidence            5999999999999999999888884  7889999999999999986 455667889988855  3344567788899999


Q ss_pred             HHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHH
Q 015377           77 VSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV  111 (408)
Q Consensus        77 ~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~  111 (408)
                      +.+|.+...+....+|...|...++-..+.++.++
T Consensus       169 l~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~  203 (498)
T COG3104         169 LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFL  203 (498)
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988899999999998775555444443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.30  E-value=1.6e-05  Score=78.88  Aligned_cols=138  Identities=19%  Similarity=0.156  Sum_probs=86.8

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHhhhhhhhhhhhccccc
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNIL-LTALLSGARMFSMGTFIIANIFAPEIY  325 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~el~  325 (408)
                      .......+++.+|.++.+.++|++|||..++.+.+...+..+......+... ...-.+. .+...+...+...|.+|+-
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~-G~g~G~~~~~~piy~sEia  171 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILT-GLGVGGASVLAPVYISEIA  171 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-ccchhhhhhcchhhHhhcC
Confidence            3444556788899999999999999999998877766554444443332221 1111111 1222233356688999999


Q ss_pred             CCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc--chhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          326 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC--HQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       326 p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      |++.|+.-.+.......+|-.++ ++.+......  ++...+.+..+.+++..+. +++.||+.
T Consensus       172 p~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp  233 (513)
T KOG0254|consen  172 PAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP  233 (513)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence            99999999998888777665555 4444444322  3334445555555555555 66667754

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.29  E-value=9.1e-05  Score=71.03  Aligned_cols=131  Identities=18%  Similarity=0.160  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHHhhh-----chHH-HHHHHHHHHHHHHHHHHhhh--hhHH-HHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          257 LPGLLTAALLVDRV-----GRKL-SMTIMFIFVCIFLLPLVTLQ--SNIL-LTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       257 ~~g~~~~~~l~dr~-----grR~-~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      .+..++.+.++||.     |||+ .+..+.....+.+..+....  .+.. .....+...++.....+....+.+|.+|.
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~  125 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP  125 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            35678899999999     7876 45555555544443333321  1121 11111122222223335667888999999


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      +.|+++.++......+|.++++.+...+.+. .++...+.+.++..++..+.. +..||++.
T Consensus       126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~-~~~~e~~~  186 (402)
T PRK11902        126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT-LWAPEPEV  186 (402)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH-HhcCCCcc
Confidence            9999999999988888888888777766654 355667777777666655543 44456543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.28  E-value=1.7e-05  Score=76.29  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=76.5

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh---hh-hHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL---QS-NILLTALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      .+++++|++.+++++||+|||..+.++.+...+..+.....   +. ......-+..+..+ .........|..|+-|.+
T Consensus        70 ~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~-gl~~~~~pmyl~E~sP~~  148 (485)
T KOG0569|consen   70 FIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLAC-GLSTGLVPMYLTEISPKN  148 (485)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-HHHHHHHHHHHhhcChhh
Confidence            47788999999999999999988877665554433322221   11 11111111111111 122345667889999999


Q ss_pred             hhhHHHhHHHHhhhHhHhhHHHHH-HHHhhhcchhhHHH--HHHHHHHHHHHHHHhcccccCC
Q 015377          329 MRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTAAIL--LLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       329 ~R~~a~gi~~~~~~~~~~~~p~~~-~~l~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      .|+....+......+|-.++..+. +.+.... ..++++  +..+..++. ++.+.+.||+.+
T Consensus       149 ~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~-~~W~~l~~~~~i~~~~~-l~~l~~~PESPk  209 (485)
T KOG0569|consen  149 LRGALGTLLQIGVVIGILLGQVLGLPSLLGTE-DLWPYLLAFPLIPALLQ-LALLPFLPESPK  209 (485)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHccHHhcCCC-cchHHHHHHHHHHHHHH-HHHHhcCCCCcc
Confidence            999998888877777766663333 3343221 223333  223333444 444555578654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.11  E-value=0.0087  Score=56.00  Aligned_cols=73  Identities=12%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             HHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhHhcccc-chHHHHHHhhHHH
Q 015377           31 LLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPIL-TWRWLLALSAIPA  103 (408)
Q Consensus        31 l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~~-~Wr~~f~i~~i~~  103 (408)
                      ..+.-.+.|+|.+... ...++.+|.+|+++|++..++.......|.++++.+...+.+.+ .=|....++..+.
T Consensus        92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~  166 (403)
T PF03209_consen   92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVAL  166 (403)
T ss_pred             HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHH
Confidence            3344446667766654 44567899999999999999998889999999998877666543 4455545554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.09  E-value=5.2e-05  Score=73.44  Aligned_cols=133  Identities=15%  Similarity=0.087  Sum_probs=97.9

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchh
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--LQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  330 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R  330 (408)
                      ..+.+++.+.++++.||+|-|+++..+.++.++..+....  ..+.....+.-+...+.....++....+.+.-.|+.-|
T Consensus        83 ~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Er  162 (466)
T KOG2532|consen   83 FWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNER  162 (466)
T ss_pred             HHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHH
Confidence            4667888899999999999999998887777664433332  22222222222333333345567888899999999999


Q ss_pred             hHHHhHHHHhhhHhHhhHHHHHHHHhhh-cchhhHHHHHHHHHHHHHHHHHhcccc
Q 015377          331 STGAGVAYAVGRIGGMVCPLVAVGLVTS-CHQTAAILLLEALIVLSVVVILLIPFE  385 (408)
Q Consensus       331 ~~a~gi~~~~~~~~~~~~p~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~e  385 (408)
                      ++..++.++...+|.+++-.+.+.+-+. .|+...|++++++.++..++.+++..|
T Consensus       163 s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d  218 (466)
T KOG2532|consen  163 STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD  218 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999998886677877776 777888999998887776666665544

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.08  E-value=3.5e-05  Score=78.03  Aligned_cols=131  Identities=10%  Similarity=0.100  Sum_probs=83.3

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh----------------------------h---------
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ----------------------------S---------  295 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~----------------------------~---------  295 (408)
                      .++..++.++.+++.||.|||+.+.++.++.++..+.....+                            +         
T Consensus        78 ~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~  157 (633)
T TIGR00805        78 EIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQ  157 (633)
T ss_pred             hHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccc
Confidence            355566778899999999999988776666554333222110                            0         


Q ss_pred             --------h--HHHHHHHHHHH----HHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc--
Q 015377          296 --------N--ILLTALLSGAR----MFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC--  359 (408)
Q Consensus       296 --------~--~~~~~~~~~~~----~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~--  359 (408)
                              .  .....+++...    +.....++....+..|.+|++.|+...|+.+....+|..+++.+.+.+.+..  
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d  237 (633)
T TIGR00805       158 CPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVD  237 (633)
T ss_pred             cccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccc
Confidence                    0  00111111222    2222334567788999999999999999999999999999988877655321  


Q ss_pred             -------------------c-hhhHHHHHHHHHHHHHHHHHhcc
Q 015377          360 -------------------H-QTAAILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       360 -------------------~-~~~~~~~~~~~~~i~~~~~~~~~  383 (408)
                                         + +...|++.+++.++.++..++++
T Consensus       238 ~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       238 TGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFP  281 (633)
T ss_pred             cccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence                               0 23356777777766665555554

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.07  E-value=0.00036  Score=66.46  Aligned_cols=120  Identities=15%  Similarity=0.124  Sum_probs=68.5

Q ss_pred             HHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHH-HHHHHHH-hhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCC
Q 015377          250 FITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVC-IFLLPLV-TLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPT  327 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~  327 (408)
                      ....+...++.++.+.++||.|||........... +...... ..++.+...........+.....+....+..|.  .
T Consensus        46 s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~  123 (382)
T TIGR00902        46 GAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--Q  123 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--H
Confidence            34456667788899999999998654422221111 1111111 122222221111111122222334455554442  4


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHH
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEAL  371 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~  371 (408)
                      +.|+++.|.....+.+|.+++|.+.+.+.+..++...+.+....
T Consensus       124 ~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       124 KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            67899999999999999999999888888776665555555444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.03  E-value=1e-06  Score=86.97  Aligned_cols=89  Identities=15%  Similarity=0.220  Sum_probs=2.9

Q ss_pred             HHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhHhcc------------------
Q 015377           28 YISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP------------------   88 (408)
Q Consensus        28 ~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~------------------   88 (408)
                      +..|+++.++.|+|..... ...+|+=|.+++++-+...++......+|.++|.+++.....                  
T Consensus       141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~  220 (539)
T PF03137_consen  141 FYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPS  220 (539)
T ss_dssp             -----------SSS------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCC
Confidence            4669999999999988764 567799999999999999999999998998888877765321                  


Q ss_pred             ccc----hHHHHHHhhHHHHHHHHHHHhccCc
Q 015377           89 ILT----WRWLLALSAIPAFVLLIFIVFMPES  116 (408)
Q Consensus        89 ~~~----Wr~~f~i~~i~~~~~~~~~~~lpES  116 (408)
                      +..    |-.-|.+.++..++..+..+++|++
T Consensus       221 dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~  252 (539)
T PF03137_consen  221 DPRWVGAWWLGFLICGILLFLSAIPLFFFPKK  252 (539)
T ss_dssp             --------------------------------
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            012    5555555555555555556666655

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.99  E-value=0.00025  Score=68.69  Aligned_cols=138  Identities=19%  Similarity=0.144  Sum_probs=78.1

Q ss_pred             HHHHhhhhHHHHHHHHHHhh----hchHHH-HHHHHHHHHHHHHHHHhhhh----hHHHHHHH--HHHHHHhhhhhhhhh
Q 015377          250 FITSFAELPGLLTAALLVDR----VGRKLS-MTIMFIFVCIFLLPLVTLQS----NILLTALL--SGARMFSMGTFIIAN  318 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr----~grR~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~  318 (408)
                      .+..+...+..++.|.++||    +|||+. ++.+.....+....+....+    ........  ...............
T Consensus        42 ~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (437)
T TIGR00792        42 LVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYW  121 (437)
T ss_pred             HHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHh
Confidence            34446667788999999998    677554 44554444444333332211    11111111  111111111122335


Q ss_pred             hhccccc-CCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhh-------cchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          319 IFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-------CHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       319 ~~~~el~-p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      .+.+|+. +.+.|++..++....+.+|+.+++.+.+.+...       .++...+.+++++.++..++..+..||.+
T Consensus       122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            6778887 467899999998888888887776665544432       22334566667776666666666666754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.98  E-value=8.9e-05  Score=71.59  Aligned_cols=138  Identities=20%  Similarity=0.143  Sum_probs=98.0

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhH
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRST  332 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~  332 (408)
                      ++..++.+..-|.++||.|||..+....+.+.+-.....+..  ++... ...........++....+.++.-..+.|..
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~  148 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSS  148 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHHHH
Confidence            344566677889999999999998876665544322222211  21111 111111123445667888999999999999


Q ss_pred             HHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccccc
Q 015377          333 GAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKELVN  393 (408)
Q Consensus       333 a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~  393 (408)
                      +.|+.+..-+.+..++|.....+.+..+....+.+-.+..++..+...+..||+...+.++
T Consensus       149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~  209 (463)
T KOG2816|consen  149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS  209 (463)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence            9999999888888899988887777766667777777888888889999999987765554

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.00015  Score=71.11  Aligned_cols=129  Identities=16%  Similarity=0.078  Sum_probs=91.4

Q ss_pred             hhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHhhhhhhhhhhhcccccCCchhhHH
Q 015377          255 AELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTA-LLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  333 (408)
Q Consensus       255 ~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a  333 (408)
                      +......+.+.+.||+|.|.+.+++.+++++.+....+..+-+.... +-....+.....+...-++....| .+.|+.|
T Consensus        93 ~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA  171 (509)
T KOG2504|consen   93 VYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALA  171 (509)
T ss_pred             HHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHH
Confidence            34455678889999999999999998888776666555554222111 111111111112233344445555 5669999


Q ss_pred             HhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccc
Q 015377          334 AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  384 (408)
Q Consensus       334 ~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  384 (408)
                      .|++..-..+|.++-|.+...+++..|+....++++.+++-+++....+.|
T Consensus       172 ~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  172 TGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             HhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999988888888888888999999998888888888877

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.88  E-value=0.0014  Score=62.47  Aligned_cols=138  Identities=14%  Similarity=0.065  Sum_probs=74.2

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHH-HHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 015377          246 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVTL-QSNILLTALLSGARMFSMGTFIIANIFAPE  323 (408)
Q Consensus       246 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  323 (408)
                      .....+..+..+++.++.+.++||.|||....-.. ....+........ ++.+.................+....+..+
T Consensus        42 G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~  121 (382)
T PRK11128         42 GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANT  121 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHH
Confidence            33444455667788889999999999853221111 1111111111111 222221111111222222233444444444


Q ss_pred             ccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          324 IYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       324 l~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      .  .+.|+.+.|.....+.+|..++|.+.+.+.+..++...+.+.++..++..+. .+..||.
T Consensus       122 ~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~  181 (382)
T PRK11128        122 W--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG-QLLRPTI  181 (382)
T ss_pred             H--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHccCCC
Confidence            3  3457888888888889999999999888877766666666555544444333 3344554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.87  E-value=0.002  Score=59.78  Aligned_cols=141  Identities=19%  Similarity=0.132  Sum_probs=88.4

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---TLQSNILLTALLSGARMFSMGTFIIANIFAPEIY  325 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  325 (408)
                      .+....+...+.+..+++.||+|+|.-++.++.+..+.+....   ...+-......++.........-+....+...+.
T Consensus        54 qfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg  133 (422)
T COG0738          54 QFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLG  133 (422)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhC
Confidence            3444456677888899999999999999888777665443332   1111111111122221111122245566778889


Q ss_pred             CCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhh-------------------cchhhHHHHHHHHHHHHHHHHHhcc-cc
Q 015377          326 PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS-------------------CHQTAAILLLEALIVLSVVVILLIP-FE  385 (408)
Q Consensus       326 p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~-------------------~~~~~~~~~~~~~~~i~~~~~~~~~-~e  385 (408)
                      |.+..+.=.++...+..+|++++|.+...++.+                   .....+|..++...++..+.....+ ||
T Consensus       134 ~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~  213 (422)
T COG0738         134 KPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPD  213 (422)
T ss_pred             CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCc
Confidence            888788888999999999999999988877662                   1234577777766655555544443 55


Q ss_pred             cCCc
Q 015377          386 TKGK  389 (408)
Q Consensus       386 t~~~  389 (408)
                      .+..
T Consensus       214 ~~~~  217 (422)
T COG0738         214 LQVA  217 (422)
T ss_pred             CCcc
Confidence            4443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.86  E-value=5.5e-07  Score=87.73  Aligned_cols=106  Identities=18%  Similarity=0.182  Sum_probs=70.5

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhhhhhhhhhhhccc
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQ---SNILLTALLSGARMFSMGTFIIANIFAPE  323 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  323 (408)
                      .......++.++|++++|+++||+|||+.+..+..+..+..+......   +.......-+...+...+.......+..|
T Consensus        50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E  129 (451)
T PF00083_consen   50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISE  129 (451)
T ss_pred             HHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            334455678889999999999999999988877666554443333322   22222111122222223345677889999


Q ss_pred             ccCCchhhHHHhHHHHhhhHhHhhHHHHH
Q 015377          324 IYPTSMRSTGAGVAYAVGRIGGMVCPLVA  352 (408)
Q Consensus       324 l~p~~~R~~a~gi~~~~~~~~~~~~p~~~  352 (408)
                      ..|++.|+...++......+|.+++..+.
T Consensus       130 ~~~~~~R~~~~~~~~~~~~~G~~~~~~~~  158 (451)
T PF00083_consen  130 IAPPKHRGFLSSLFQLFWALGILLASLIG  158 (451)
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            99999999998888887777776666544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.86  E-value=0.0015  Score=62.36  Aligned_cols=123  Identities=22%  Similarity=0.138  Sum_probs=72.4

Q ss_pred             HHHHhhhchHHHHHHHHHH-HHHHHHHHHh---hhh-hHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHH
Q 015377          264 ALLVDRVGRKLSMTIMFIF-VCIFLLPLVT---LQS-NILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAY  338 (408)
Q Consensus       264 ~~l~dr~grR~~~~~~~~~-~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~  338 (408)
                      .+..||.|||+..+....+ ...+...+..   ... ............++..........+..|..+.+.++.+.+...
T Consensus        60 ~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~  139 (390)
T TIGR02718        60 NWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQI  139 (390)
T ss_pred             ccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHH
Confidence            5567788998886554322 2212222221   111 1111111111112222222445556788888888888877777


Q ss_pred             HhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          339 AVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       339 ~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      ....+|..+++.....+.+..++..+|.+.++..++..+..++++||+
T Consensus       140 ~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~  187 (390)
T TIGR02718       140 AGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA  187 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            766788888887777777766777788888888777777766666554

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.78  E-value=0.00068  Score=59.79  Aligned_cols=132  Identities=17%  Similarity=0.135  Sum_probs=72.7

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh------hHHHHHHHHHHHHHhhhh-hhhhhhhc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS------NILLTALLSGARMFSMGT-FIIANIFA  321 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~  321 (408)
                      .....++.-.| +..|.+.|+.|.|.++.++.....+-...+.....      +.+...+........... .+....-.
T Consensus        43 ~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~  121 (250)
T PF06813_consen   43 STAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTC  121 (250)
T ss_pred             HHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHH
Confidence            33444555554 78899999999999998877766554433322111      111211111111111111 12333445


Q ss_pred             ccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHH-HHHHHHHHhcc
Q 015377          322 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALI-VLSVVVILLIP  383 (408)
Q Consensus       322 ~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~-~i~~~~~~~~~  383 (408)
                      .+.||. .|+++.|+.-+...+++.+-..+...+... +....+++.+... +++.+...+..
T Consensus       122 ~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  122 VRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             HHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHHHhhhee
Confidence            589985 699999999999988877777666554432 2222333344333 34444444443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.77  E-value=0.018  Score=55.27  Aligned_cols=81  Identities=12%  Similarity=0.030  Sum_probs=54.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhh-hHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 015377            3 EGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAA   81 (408)
Q Consensus         3 gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~   81 (408)
                      |.|..+.++...+...... -+-+|-+.+++.-.+.|+|.+...+. ..|++|..+++.+.+..++.=.....+.+.|+.
T Consensus        78 ~~K~~lv~ga~~y~~f~~g-fl~~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi  156 (461)
T KOG3098|consen   78 GPKWALVIGATCYAAFPLG-FLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGI  156 (461)
T ss_pred             hHHHHHHHHhHHHHHHHHH-HHhcchHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhH
Confidence            5566666666665544432 23356677888999999998875544 458899999999998887655555555555554


Q ss_pred             HHh
Q 015377           82 LAW   84 (408)
Q Consensus        82 l~~   84 (408)
                      +-.
T Consensus       157 ~l~  159 (461)
T KOG3098|consen  157 ILF  159 (461)
T ss_pred             hhe
Confidence            433

>TIGR00788 fbt folate/biopterin transporter

Probab=97.74  E-value=0.0015  Score=63.98  Aligned_cols=125  Identities=16%  Similarity=0.170  Sum_probs=71.1

Q ss_pred             HHHHHHHhhhc-----hHHHHHHHHHHHH-HHHHHHHhhhhh-HHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHH
Q 015377          261 LTAALLVDRVG-----RKLSMTIMFIFVC-IFLLPLVTLQSN-ILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTG  333 (408)
Q Consensus       261 ~~~~~l~dr~g-----rR~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a  333 (408)
                      .+.|.++||++     ||+.++.+.++.+ +....+....+. ......++...++....-...-.+..|..+ +.+..+
T Consensus        78 ~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~  156 (468)
T TIGR00788        78 PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAG  156 (468)
T ss_pred             HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcC
Confidence            44899999996     6666666655542 222222211221 122212223323222233456777889988 544443


Q ss_pred             ---HhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          334 ---AGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       334 ---~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                         .+..+....+|..+++.+.+.+.+..++...+.+.++..++..+. .++.||.+
T Consensus       157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~-~~~~~E~~  212 (468)
T TIGR00788       157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFV-SNLSKERR  212 (468)
T ss_pred             CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH-HHhccccc
Confidence               334444445788888888887777666666777777777666444 44556765

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.61  E-value=0.00075  Score=65.79  Aligned_cols=140  Identities=17%  Similarity=0.166  Sum_probs=100.6

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      ..+..++.++|.+.++.+.||+.-.+.+..+.+..+++.......++-....++-+...++-.+.++....+.+--|..+
T Consensus        87 ~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~  166 (495)
T KOG2533|consen   87 DTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS  166 (495)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh
Confidence            34445778889999999999999666665554444443322222333333333333444455566788888999999999


Q ss_pred             hhhHHHhHHHHhhhHhHhhHHHHHHHHhh------hcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          329 MRSTGAGVAYAVGRIGGMVCPLVAVGLVT------SCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       329 ~R~~a~gi~~~~~~~~~~~~p~~~~~l~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      .|++-.|+-++.+.+|+++++++...+.+      ..++.+.|++-|+++++.+++++++.|+-..
T Consensus       167 e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~  232 (495)
T KOG2533|consen  167 ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS  232 (495)
T ss_pred             hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence            99999999999999999999999876532      2345578899999999998888888877544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.54  E-value=0.055  Score=51.12  Aligned_cols=103  Identities=22%  Similarity=0.197  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhHhcc
Q 015377            9 LGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP   88 (408)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~   88 (408)
                      .+..+++.++-++.++++|...=+++-.+.|++.|.+-+...=++...|+.    ..+.+..+...+.++|+..-..+.+
T Consensus        93 ~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~  168 (402)
T PF02487_consen   93 LICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT  168 (402)
T ss_pred             HHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHhcCcc----ccccccCCcChhhHHHHHHHHHHHH
Confidence            444556677778889999999888888899988886533322123455543    3455555566666666654443333


Q ss_pred             ccch--HHHHHHhhHHHHHHHH-HHHhccCc
Q 015377           89 ILTW--RWLLALSAIPAFVLLI-FIVFMPES  116 (408)
Q Consensus        89 ~~~W--r~~f~i~~i~~~~~~~-~~~~lpES  116 (408)
                       .++  |..+.+....+++..+ .++.+|.+
T Consensus       169 -~g~s~~~tll~~~~lp~~~~~~~f~~L~~~  198 (402)
T PF02487_consen  169 -LGLSPRTTLLIMLVLPAIFLLSYFFLLPSP  198 (402)
T ss_pred             -hCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence             443  6666665544444433 44455543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.54  E-value=0.0014  Score=61.83  Aligned_cols=95  Identities=15%  Similarity=0.027  Sum_probs=61.5

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh--hhhhH-HHHHHHHHH----HHHhhhhhhhhhhhc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT--LQSNI-LLTALLSGA----RMFSMGTFIIANIFA  321 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~  321 (408)
                      ..+..++.+.|.++.|++.||+|||++....+++..++......  ..+.. ..+..++..    .+...+=++..-+++
T Consensus        90 n~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~  169 (538)
T KOG0252|consen   90 NAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIM  169 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHh
Confidence            34445777899999999999999999887665555444333222  22222 111122222    222233468889999


Q ss_pred             ccccCCchhhHHHhHHHHhhhH
Q 015377          322 PEIYPTSMRSTGAGVAYAVGRI  343 (408)
Q Consensus       322 ~el~p~~~R~~a~gi~~~~~~~  343 (408)
                      +|.-..+.|++-.+...++..+
T Consensus       170 SE~an~~~RGa~iaavFa~Qg~  191 (538)
T KOG0252|consen  170 SESANKKTRGAFIAAVFAMQGF  191 (538)
T ss_pred             hhhhhhccccceeEEEEEecch
Confidence            9999999999888877776544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.50  E-value=0.005  Score=58.32  Aligned_cols=141  Identities=19%  Similarity=0.213  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHH---h---hhhhHHHHHHHHHHHHHhhhhhhhh
Q 015377          244 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLV---T---LQSNILLTALLSGARMFSMGTFIIA  317 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
                      +........++..++...+.|.++||+|.|+-++....+..+...+..   +   .+.+..... +....+......+..
T Consensus        44 ~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~-iig~i~l~~~f~~~~  122 (412)
T PF01306_consen   44 EIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGA-IIGGIYLGLVFNAGV  122 (412)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHH-HHTTTTTTTTTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccc
Confidence            334444445566777888999999999977665543333222211111   1   111111111 111111111111111


Q ss_pred             hhhcccccCC---chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          318 NIFAPEIYPT---SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       318 ~~~~~el~p~---~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      .+  .|.+-.   +..+.-+|=....|.+|-.++..+.+.+.+ .+++..+.+.....++..++..+..||...
T Consensus       123 ~~--~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~  193 (412)
T PF01306_consen  123 PL--SEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPP  193 (412)
T ss_dssp             HH--HHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSS
T ss_pred             hH--HHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCch
Confidence            11  133322   223455666777888888888888887765 344444444344444455555556555433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09669 putative symporter YagG; Provisional

Probab=97.50  E-value=0.0013  Score=64.07  Aligned_cols=136  Identities=15%  Similarity=0.117  Sum_probs=72.3

Q ss_pred             HHHHhhhhHHHHHHHHHHhh----hchHHHHH-HHHHHHHHHHHHHHhhh----hhHHHHHHH--HHHHHHhhhhhhhhh
Q 015377          250 FITSFAELPGLLTAALLVDR----VGRKLSMT-IMFIFVCIFLLPLVTLQ----SNILLTALL--SGARMFSMGTFIIAN  318 (408)
Q Consensus       250 ~~~~~~~~~g~~~~~~l~dr----~grR~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~  318 (408)
                      .+.-+...+..++.|.++||    +|||+..+ .+....++.........    .........  .....+.........
T Consensus        52 ~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~  131 (444)
T PRK09669         52 LVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYC  131 (444)
T ss_pred             HHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHH
Confidence            33345556677888999998    67765544 44444444333222211    111111111  111111122223345


Q ss_pred             hhccccc-CCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-------hhhHHHHHHHHHHHHHHHHHhcccc
Q 015377          319 IFAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-------QTAAILLLEALIVLSVVVILLIPFE  385 (408)
Q Consensus       319 ~~~~el~-p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~e  385 (408)
                      .+.+|+. +.+.|.+..+.....+.+|+.+++.+...+....+       ....+.+++++++++.++.++..+|
T Consensus       132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e  206 (444)
T PRK09669        132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKE  206 (444)
T ss_pred             HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence            6778887 44779998898888888888777765544433221       1224455566665655555555444

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.43  E-value=0.0013  Score=59.43  Aligned_cols=103  Identities=28%  Similarity=0.385  Sum_probs=77.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHhhccCCcc-hhhhHHHhhhcCC-CcchhHHHHHHH-HHHHHHH
Q 015377            3 EGRMSILGGALVTFVAGLLSAFSPN--YISLLILRGLAGAGLGSG-HVFFSWFMEFVPP-SNRGKWMVVFST-FWTFGSV   77 (408)
Q Consensus         3 gRr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~-~~Rg~~~~~~~~-~~~~G~~   77 (408)
                      |||+.+..+......+.+..++..+  ...+++.|+..|++.|.. +....++.|+.|+ ++|+...+.... ...+|.+
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (338)
T COG0477          67 GRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLA  146 (338)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH
Confidence            8888888887765666677777776  999999999999998865 4566788999998 778888888777 5777888


Q ss_pred             HHHHHHhHhcc--ccchHHHHHHhhHHHHH
Q 015377           78 SEAALAWIVMP--ILTWRWLLALSAIPAFV  105 (408)
Q Consensus        78 l~~~l~~~~~~--~~~Wr~~f~i~~i~~~~  105 (408)
                      +++.++..+..  ..+||+.|.+.......
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         147 LGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            87766554432  46899977766655433

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.41  E-value=0.00097  Score=60.40  Aligned_cols=104  Identities=15%  Similarity=0.284  Sum_probs=72.9

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhHhccc--cch
Q 015377           15 TFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMPI--LTW   92 (408)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~~--~~W   92 (408)
                      ......+--+.++...+=+.-+.-|...++...-++|+-+..+|+++.++.+-.....-.|...+..++..+.+.  .++
T Consensus        82 ~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy  161 (433)
T KOG3810|consen   82 GVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSY  161 (433)
T ss_pred             hhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccch
Confidence            344445556667777777777777777777666677888899999999999999888888888888888776543  345


Q ss_pred             HHHHHHhhHHHHHHHHHHHhccCcch
Q 015377           93 RWLLALSAIPAFVLLIFIVFMPESPR  118 (408)
Q Consensus        93 r~~f~i~~i~~~~~~~~~~~lpESp~  118 (408)
                      +.+=.+...-..+......++|.-||
T Consensus       162 ~~LN~ISL~~~~ia~~~A~fLP~v~r  187 (433)
T KOG3810|consen  162 TTLNYISLAEVTIAVLLALFLPRVKR  187 (433)
T ss_pred             hhhchhhHHHHHHHHHHHhhCCCCch
Confidence            55555554444444555667776653

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.41  E-value=0.0019  Score=62.05  Aligned_cols=132  Identities=11%  Similarity=0.120  Sum_probs=84.8

Q ss_pred             HHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCc
Q 015377          249 VFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTS  328 (408)
Q Consensus       249 ~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~  328 (408)
                      ..+.-.+.++..+..+.+++|+|+-+++..++.....=++.+.+.++.|....+=+.........+.....|.+...|++
T Consensus       412 ~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~  491 (618)
T KOG3762|consen  412 SALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPG  491 (618)
T ss_pred             hhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence            34445778888999999999999999988876666555555555666654433333333333345566777889999999


Q ss_pred             hhhHHHhHHHHhhh-HhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHH
Q 015377          329 MRSTGAGVAYAVGR-IGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVIL  380 (408)
Q Consensus       329 ~R~~a~gi~~~~~~-~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~  380 (408)
                      .|+++.|+.-..-. +|-.++.++.+.++...+....|-++++.|++.++...
T Consensus       492 l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  492 LRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             chHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            99999998876532 33334444444444444544556666666555444433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.39  E-value=0.0068  Score=61.01  Aligned_cols=89  Identities=12%  Similarity=0.183  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhHhcc----c-----------c--
Q 015377           29 ISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIVMP----I-----------L--   90 (408)
Q Consensus        29 ~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~~----~-----------~--   90 (408)
                      ..++.+-++.|+|.-.. +...+|+=|...+++-....++....-.+|.++|.+++.+...    .           .  
T Consensus       238 llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW  317 (735)
T KOG3626|consen  238 LLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW  317 (735)
T ss_pred             HHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch
Confidence            46888899999987765 4557788899999999999999998888888888887776421    1           0  


Q ss_pred             --chHHHHHHhhHHHHHHHHHHHhccCcc
Q 015377           91 --TWRWLLALSAIPAFVLLIFIVFMPESP  117 (408)
Q Consensus        91 --~Wr~~f~i~~i~~~~~~~~~~~lpESp  117 (408)
                        -|..=|++.+...++..+..+++|...
T Consensus       318 IGAWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  318 IGAWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence              266666677776666667777777654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.39  E-value=0.00083  Score=65.01  Aligned_cols=131  Identities=18%  Similarity=0.120  Sum_probs=76.2

Q ss_pred             hhhHHHHHHHHHHh----hhchHHHHH-HHHHHHHHHHHHHHhh-h---hh--HHHHHH--HHHHHHHhhhhhhhhhhhc
Q 015377          255 AELPGLLTAALLVD----RVGRKLSMT-IMFIFVCIFLLPLVTL-Q---SN--ILLTAL--LSGARMFSMGTFIIANIFA  321 (408)
Q Consensus       255 ~~~~g~~~~~~l~d----r~grR~~~~-~~~~~~~~~~~~~~~~-~---~~--~~~~~~--~~~~~~~~~~~~~~~~~~~  321 (408)
                      ...+-.++.|.++|    |+|||+..+ .+....++....+... .   +.  ......  ..+...+.........++.
T Consensus        49 ~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~  128 (428)
T PF13347_consen   49 WDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALI  128 (428)
T ss_pred             hhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcC
Confidence            33444457788899    789887765 4555555544444322 1   11  111111  1111111122223446788


Q ss_pred             ccccCC-chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-------hhhHHHHHHHHHHHHHHHHHhcccc
Q 015377          322 PEIYPT-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-------QTAAILLLEALIVLSVVVILLIPFE  385 (408)
Q Consensus       322 ~el~p~-~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~e  385 (408)
                      +|+.+. +.|....+....++.+|+.+...+.+.+.+..+       ......+++++.+++.++..+..+|
T Consensus       129 ~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  129 PELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             ccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            999985 689999999999888888766666665543322       2334456666767777777777777

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.37  E-value=0.028  Score=51.81  Aligned_cols=115  Identities=20%  Similarity=0.234  Sum_probs=68.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHH-hhhcCCCcchhHHH-HHHHHHHHH--
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWF-MEFVPPSNRGKWMV-VFSTFWTFG--   75 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~-~E~~p~~~Rg~~~~-~~~~~~~~G--   75 (408)
                      |.|||+.-++..++++++.+ +-..+++..++++|++.|++..... +.=+|+ .|.-..+.+....+ .+.....++  
T Consensus        95 ~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~  173 (354)
T PF05631_consen   95 RYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNG  173 (354)
T ss_pred             hcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhH
Confidence            57999999888888888775 5666899999999999999987654 444564 57643332222222 222111122  


Q ss_pred             --HHHHHHHHhHhccccch--HHHHHHhhHHHHHHH-HHHHhccCc
Q 015377           76 --SVSEAALAWIVMPILTW--RWLLALSAIPAFVLL-IFIVFMPES  116 (408)
Q Consensus        76 --~~l~~~l~~~~~~~~~W--r~~f~i~~i~~~~~~-~~~~~lpES  116 (408)
                        .+.+.+++-.+.+..+.  ..+|........+.. ++....+|+
T Consensus       174 ~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  174 VVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhccccc
Confidence              23333344444443333  667777665544443 334445554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.33  E-value=0.0024  Score=62.31  Aligned_cols=114  Identities=15%  Similarity=0.181  Sum_probs=89.5

Q ss_pred             Ccch--hHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHHH
Q 015377            2 EEGR--MSILGGALVTFVAGLLSAF--------SPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFST   70 (408)
Q Consensus         2 ~gRr--~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~~   70 (408)
                      .|-|  +++++++.++.+..+...+        .++-+.+.+.=++.|+..|+.. ..-++++|..|+++.+...+++..
T Consensus       344 ~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i  423 (477)
T PF11700_consen  344 FGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAI  423 (477)
T ss_pred             hCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            5666  8888888888766665555        5777889999999999999874 455689999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHhcccc-chHHHHHHhhHHHHHHHHHHHhccC
Q 015377           71 FWTFGSVSEAALAWIVMPIL-TWRWLLALSAIPAFVLLIFIVFMPE  115 (408)
Q Consensus        71 ~~~~G~~l~~~l~~~~~~~~-~Wr~~f~i~~i~~~~~~~~~~~lpE  115 (408)
                      .--..+.++|++...+.+.. +-|+-+....+..++.+++.+++++
T Consensus       424 ~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  424 TGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence            99999999999887776544 4788777766666665555566554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11462 putative transporter; Provisional

Probab=97.31  E-value=0.014  Score=57.08  Aligned_cols=132  Identities=14%  Similarity=0.104  Sum_probs=73.0

Q ss_pred             hhhhHHHHHHHHHHhh----hchHHHHHH-HHHHHHHHHHHHHhhh----hhHHHHHHHH--HHHHHhhhhhhhhhhhcc
Q 015377          254 FAELPGLLTAALLVDR----VGRKLSMTI-MFIFVCIFLLPLVTLQ----SNILLTALLS--GARMFSMGTFIIANIFAP  322 (408)
Q Consensus       254 ~~~~~g~~~~~~l~dr----~grR~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  322 (408)
                      +...+.-.+.|.++||    +|||+..+. +....++....+....    ..........  ....+........+++.+
T Consensus        56 i~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~  135 (460)
T PRK11462         56 ALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGG  135 (460)
T ss_pred             HHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            4445667788999997    588766654 4444444433332211    1111111111  111111222233466788


Q ss_pred             cccC-CchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-------hhhHHHHHHHHHHHHHHHHHhcccc
Q 015377          323 EIYP-TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-------QTAAILLLEALIVLSVVVILLIPFE  385 (408)
Q Consensus       323 el~p-~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~e  385 (408)
                      |+-+ .+.|++..+.-...+.+|+.+++.+...+....+       ......+++++.+++..+.++..+|
T Consensus       136 ~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE  206 (460)
T PRK11462        136 VITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKE  206 (460)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhccee
Confidence            8887 5889999999999999988888776655544322       1223345555555555555554445

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.22  E-value=0.011  Score=58.05  Aligned_cols=105  Identities=11%  Similarity=0.017  Sum_probs=57.0

Q ss_pred             HHHhhhhHHHHHHHHHHh----hhchHHHH-HHHHHHHHHHHHHHHhhh--h-h-HHHHHHHH--HHHHHhhhhhhhhhh
Q 015377          251 ITSFAELPGLLTAALLVD----RVGRKLSM-TIMFIFVCIFLLPLVTLQ--S-N-ILLTALLS--GARMFSMGTFIIANI  319 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~d----r~grR~~~-~~~~~~~~~~~~~~~~~~--~-~-~~~~~~~~--~~~~~~~~~~~~~~~  319 (408)
                      +.-+...+...+.|.++|    |+|||+.+ +.+....++....+....  + . .....+..  ....+..........
T Consensus        50 i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~a  129 (473)
T PRK10429         50 VARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWS  129 (473)
T ss_pred             HHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHh
Confidence            334555667778899999    55995554 445555444433332211  1 1 11111111  111111222233456


Q ss_pred             hccccc-CCchhhHHHhHHHHhhhHhHhhHHHHHHHH
Q 015377          320 FAPEIY-PTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  355 (408)
Q Consensus       320 ~~~el~-p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l  355 (408)
                      +.+|+- +.+.|....+.-...+.+|+++.+.+...+
T Consensus       130 l~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~  166 (473)
T PRK10429        130 LVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPF  166 (473)
T ss_pred             hhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778988 578899999887777777766665544433

>PRK09848 glucuronide transporter; Provisional

Probab=97.19  E-value=0.0048  Score=60.10  Aligned_cols=86  Identities=19%  Similarity=0.156  Sum_probs=64.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCC-------cchhHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSP--NYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPS-------NRGKWMVVFST   70 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~-------~Rg~~~~~~~~   70 (408)
                      |.|+|+.+.++.++..++.++..+.+  +++.+++.-++.|+|.+... ...+..+|..|.+       ++|...+.+++
T Consensus       290 r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~  369 (448)
T PRK09848        290 RIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSF  369 (448)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHH
Confidence            46889999999888777766665543  56677777888899887653 4445566776653       46888999999


Q ss_pred             HHHHHHHHHHHHHhHh
Q 015377           71 FWTFGSVSEAALAWIV   86 (408)
Q Consensus        71 ~~~~G~~l~~~l~~~~   86 (408)
                      ...+|..+++.+...+
T Consensus       370 ~~klg~aig~~i~g~~  385 (448)
T PRK09848        370 TRKCGQAIGGSIPAFI  385 (448)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999988776654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.09  E-value=0.067  Score=51.17  Aligned_cols=103  Identities=19%  Similarity=0.168  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015377          244 SVYINVFITSFAELPGLLTAALLVDRVGR-KLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAP  322 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~g~~~~~~l~dr~gr-R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (408)
                      .......+..+..+++..+.|.++||.++ |+.+..+.+++++.+.......+.+..........++.....+....++-
T Consensus        38 qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~  117 (400)
T PF03825_consen   38 QIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIAL  117 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            34444555567788899999999999854 55555555555554433333333222222222222222333445555555


Q ss_pred             cccCCchhhHHHhHHHHhhhHhHhhH
Q 015377          323 EIYPTSMRSTGAGVAYAVGRIGGMVC  348 (408)
Q Consensus       323 el~p~~~R~~a~gi~~~~~~~~~~~~  348 (408)
                      +...  .+..-+|-....|.+|=+++
T Consensus       118 ~~~~--~~~~~YG~iRlwGSiGf~~~  141 (400)
T PF03825_consen  118 SYLG--DRGKDYGRIRLWGSIGFIVA  141 (400)
T ss_pred             HHcc--cccCCCCcchhhhhHHHHHH
Confidence            5444  24555566666665554444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=97.05  E-value=0.00088  Score=61.30  Aligned_cols=110  Identities=13%  Similarity=0.107  Sum_probs=75.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhh--hhH--HHHHHHHHHhhccCCcchhhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFS--PNY--ISLLILRGLAGAGLGSGHVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~--~~~--~~l~~~R~l~Gi~~g~~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      +.|||+.+.++.++++++.++.-..  +|.  ..+..+|++.-.+.+.   .+.|.-|++|.+.|+...+.-....-+|.
T Consensus       407 rlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqv---aYvYtPEVyPTavRatgvGtcSsmaRIgg  483 (528)
T KOG0253|consen  407 RLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQV---AYVYTPEVYPTAVRATGVGTCSSMARIGG  483 (528)
T ss_pred             HhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheE---EEEecCcccchhhhhcchhhhhhHHhhhh
Confidence            4699999999999999888765444  332  3467788877666554   34556699999999999999999999999


Q ss_pred             HHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccC
Q 015377           77 VSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPE  115 (408)
Q Consensus        77 ~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpE  115 (408)
                      ++.|+++ ...+....-.++.. +...++..+..+++|-
T Consensus       484 I~~p~iA-~~~e~s~sl~i~vy-~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  484 IFSPVIA-MRAELSTSLPIFVY-GALFILAGIAVCFFPI  520 (528)
T ss_pred             hhhhHHH-HHhccceeehHHHH-HHHHHHHHHHheeeee
Confidence            9999998 32222223233333 3333333444555553

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.86  E-value=0.034  Score=53.50  Aligned_cols=140  Identities=16%  Similarity=0.088  Sum_probs=78.6

Q ss_pred             hhhHHHHHHHHHHhh----hchHHHHH-HHHHHHHHHHHHHHhhhh----h-H-HHHHHHHHHHHHhhhhhhhhhhhccc
Q 015377          255 AELPGLLTAALLVDR----VGRKLSMT-IMFIFVCIFLLPLVTLQS----N-I-LLTALLSGARMFSMGTFIIANIFAPE  323 (408)
Q Consensus       255 ~~~~g~~~~~~l~dr----~grR~~~~-~~~~~~~~~~~~~~~~~~----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~e  323 (408)
                      .-.+.-.+.|.++||    +|||+..+ .+.+...+.........+    . . ......++...+....+....++.+|
T Consensus        60 iDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~  139 (467)
T COG2211          60 IDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPE  139 (467)
T ss_pred             HHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchh
Confidence            334556677888896    57766654 444555544443332221    1 1 11111112222222333344667788


Q ss_pred             ccCC-chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcch----hhHHHHHHHHHHHHHHHHHhcccccCCcccccc
Q 015377          324 IYPT-SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ----TAAILLLEALIVLSVVVILLIPFETKGKELVNT  394 (408)
Q Consensus       324 l~p~-~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~  394 (408)
                      +-+. +.|.+-.+.-..++.+|+++..++.+++....+.    .......+..++++.+..++....+|+|..+..
T Consensus       140 iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~  215 (467)
T COG2211         140 ITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQ  215 (467)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccc
Confidence            8765 7799999999999999988888877777654332    123334444455555555555556666766443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.83  E-value=0.31  Score=47.42  Aligned_cols=41  Identities=7%  Similarity=-0.164  Sum_probs=37.5

Q ss_pred             hhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHh
Q 015377          316 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  356 (408)
Q Consensus       316 ~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~  356 (408)
                      +.|.+.+|+++.+.-.+-+++....+++|.++++.+..++.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999998876654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.55  E-value=0.053  Score=51.32  Aligned_cols=105  Identities=15%  Similarity=0.127  Sum_probs=60.8

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHH-HHhh----hhhHHHHHHHHHHHHHhhhhh----hhhhhhc
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLP-LVTL----QSNILLTALLSGARMFSMGTF----IIANIFA  321 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  321 (408)
                      +..+..++-.+.+.|+.||.|-|...+++....++-... +.-.    .+.... .....+........    .++.-+.
T Consensus        87 Iym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~-~l~~~Gq~iaa~Aq~Fim~lPskiA  165 (480)
T KOG2563|consen   87 IYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRR-PLTHTGQSIAAAAQPFILGLPSKIA  165 (480)
T ss_pred             HHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchh-hhhHHhHHHHHHhhhHhhccccHHH
Confidence            334566777788999999999999988876665543221 1111    111111 11111211111111    2223344


Q ss_pred             ccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHh
Q 015377          322 PEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  356 (408)
Q Consensus       322 ~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~  356 (408)
                      .--||...|++|..++.+.+-+|..++-++-+.+.
T Consensus       166 ~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV  200 (480)
T KOG2563|consen  166 AVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILV  200 (480)
T ss_pred             HhhCCcchhhhhhhHHHhcchHHHHHHhhccceec
Confidence            56689999999999999988887776655544343

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.52  E-value=0.68  Score=42.88  Aligned_cols=133  Identities=18%  Similarity=0.073  Sum_probs=67.6

Q ss_pred             hhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhh--hhh---cccccCCchh
Q 015377          256 ELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIA--NIF---APEIYPTSMR  330 (408)
Q Consensus       256 ~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~el~p~~~R  330 (408)
                      ..+-..+.|.++||+|||+.-+..+++-.+.++.-...+...+...-+ ++.......++..  |.+   -..=+|.+-.
T Consensus        82 s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRv-lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L  160 (354)
T PF05631_consen   82 SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRV-LGGIATSLLFSAFESWMVHEHNKRGFPQEWL  160 (354)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            344556778899999999977665555444443221111111111111 1111111111211  222   1234566655


Q ss_pred             hHHHhHHHHh-hhHhHhhHHHHHHHHhhhc--chhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 015377          331 STGAGVAYAV-GRIGGMVCPLVAVGLVTSC--HQTAAILLLEALIVLSVVVILLIPFETKGK  389 (408)
Q Consensus       331 ~~a~gi~~~~-~~~~~~~~p~~~~~l~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~et~~~  389 (408)
                      +.-++.+... +.+.++.+.++...+.+..  ++..||..-..+..++.+++...-+|..|.
T Consensus       161 ~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~  222 (354)
T PF05631_consen  161 SDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD  222 (354)
T ss_pred             HHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence            6556655533 3344555555555444433  345678777777777777777666676554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.45  E-value=0.094  Score=50.72  Aligned_cols=140  Identities=18%  Similarity=0.248  Sum_probs=78.6

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHH-h--hhhhhhhhh
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGR-KLSMTIMFIFVCIFLL---PLVTLQSNILLTALLSGARMF-S--MGTFIIANI  319 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~gr-R~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~  319 (408)
                      +.....+++..+++++.++...|.+. |+.++.+.+++.+..+   .+.+..+....  +++++.++ .  .+..+..-.
T Consensus        75 ~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y--~mL~~R~l~Gvg~~n~a~lR~  152 (488)
T KOG2325|consen   75 LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKY--LMLVARILTGVGVGNFAVLRA  152 (488)
T ss_pred             HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHH--HHHHHHHHcCcCcccHHHHHH
Confidence            34445668888899999999999884 4445454444443222   22222221211  22222222 1  233355667


Q ss_pred             hcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHH---Hhhh---------cc-hhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          320 FAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVG---LVTS---------CH-QTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       320 ~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~---l~~~---------~~-~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      |.+.---.+.|.+|.+...+..-+|.+++|.+...   +.+.         .+ ...+-.++..+.++..+...++.+|.
T Consensus       153 Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  153 YIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             HHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            87886666777777777776444555555544332   2211         11 23566677788888888888877775


Q ss_pred             CC
Q 015377          387 KG  388 (408)
Q Consensus       387 ~~  388 (408)
                      ..
T Consensus       233 ~~  234 (488)
T KOG2325|consen  233 YR  234 (488)
T ss_pred             cc
Confidence            43

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.43  E-value=0.95  Score=43.58  Aligned_cols=101  Identities=18%  Similarity=0.152  Sum_probs=62.1

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH----Hhhhhh--HHHHHHHHHHHHHh-hhhh---hhh
Q 015377          248 NVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL----VTLQSN--ILLTALLSGARMFS-MGTF---IIA  317 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~-~~~~---~~~  317 (408)
                      .-.++++.++.|+++..++.+|+|..+.=+.+......++...    ....++  ......++.+.... .|.+   -..
T Consensus       298 ~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~  377 (432)
T PF06963_consen  298 FRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAV  377 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3456678889999999999999998776655544433322211    112221  22222222222211 1222   234


Q ss_pred             hhhcccccCCchhhHHHhHHHHhhhHhHhhH
Q 015377          318 NIFAPEIYPTSMRSTGAGVAYAVGRIGGMVC  348 (408)
Q Consensus       318 ~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~  348 (408)
                      ..+..|..|.+.|++-.|+-++...+...+.
T Consensus       378 ~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~  408 (432)
T PF06963_consen  378 TQIMQENVPESERGAVSGVQNSLQSLFELLS  408 (432)
T ss_pred             HHhhcccCCHHHhhHHHHHHHHHHHHHHHHH
Confidence            5577899999999999999999988866554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=96.42  E-value=0.033  Score=53.93  Aligned_cols=130  Identities=25%  Similarity=0.247  Sum_probs=78.9

Q ss_pred             HHHHHHHHhhh-----chHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHhhhhhhhhhhhccccc---CC
Q 015377          260 LLTAALLVDRV-----GRKLSMTIMFIFVCIFLLPLVTLQ----SNILLTALLSGARMFSMGTFIIANIFAPEIY---PT  327 (408)
Q Consensus       260 ~~~~~~l~dr~-----grR~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~---p~  327 (408)
                      -.+.|.++|-+     .||+-++++.+++.+....+....    +......++++..+.....-...-...+|..   |.
T Consensus        41 Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~  120 (433)
T PF03092_consen   41 KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE  120 (433)
T ss_pred             hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc
Confidence            35678999975     456666666666644433333211    1122222233332222222344555666766   34


Q ss_pred             chhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCcc
Q 015377          328 SMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKE  390 (408)
Q Consensus       328 ~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~  390 (408)
                      + |+.-.+.++.+..+|++++..+.+.+.+..+....+.+.+.+..+..+..+++.+|.+.++
T Consensus       121 ~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~  182 (433)
T PF03092_consen  121 S-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVRP  182 (433)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccccc
Confidence            4 6777788888888899998888887777666656677777777777778888887744443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.38  E-value=0.0086  Score=57.69  Aligned_cols=110  Identities=15%  Similarity=0.107  Sum_probs=87.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcchhHHHHHH-HHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNRGKWMVVFS-TFWTFGSVSE   79 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~Rg~~~~~~~-~~~~~G~~l~   79 (408)
                      .||-+++.+++....+=-+.....+|.|+-+-.-+++|+..+... ...+|++..+||+.|..+.++.+ .+..+|--+|
T Consensus       433 iGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~G  512 (618)
T KOG3762|consen  433 IGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLG  512 (618)
T ss_pred             hcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchh
Confidence            466677777666666555667788999999999999999999875 55679999999999999998764 4557888888


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHHHHH
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLIFIV  111 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~  111 (408)
                      +++++.+....+=|..|.+.++..++.+..+.
T Consensus       513 slIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  513 SLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             hhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            88988888888888888888877666554443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.29  E-value=0.019  Score=54.39  Aligned_cols=105  Identities=20%  Similarity=0.218  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHHHHHhhh---hhH------HHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCc---chhHHHHHHHHH
Q 015377            6 MSILGGALVTFVAGLLSAFS---PNY------ISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN---RGKWMVVFSTFW   72 (408)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~---~~~------~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~~~~~   72 (408)
                      |+++++.+++.++.++..++   .+.      ..++++-++.++|.|.. +...+..+|-+++++   |.....++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            57788888888888773322   222      57899999999999986 556667888887763   445567788899


Q ss_pred             HHHHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHH
Q 015377           73 TFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFI  110 (408)
Q Consensus        73 ~~G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~  110 (408)
                      ++|..++..+...+.++.+|.+.|.+.++..++.+..+
T Consensus        82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence            99999988877777788999999999887665554433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.25  E-value=0.084  Score=46.70  Aligned_cols=114  Identities=18%  Similarity=0.142  Sum_probs=77.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFS-------PNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWT   73 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~   73 (408)
                      .|.+.++.++.+...++-.+...+       ++++.+.+.-++.|.+.+.. .+......+.+| ++||.+.++.-.+..
T Consensus        63 ~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~G  141 (250)
T PF06813_consen   63 FGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFG  141 (250)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHH
Confidence            577788888888877766544332       46777888888877775543 333333447777 589999999999999


Q ss_pred             HHHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCc
Q 015377           74 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPES  116 (408)
Q Consensus        74 ~G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpES  116 (408)
                      +++.+-..+...+-+.+.-+.+......|.++.++..+++.+-
T Consensus       142 LSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~  184 (250)
T PF06813_consen  142 LSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPV  184 (250)
T ss_pred             hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheecc
Confidence            8888766665555555667777777777777665555554433

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.25  E-value=0.26  Score=50.27  Aligned_cols=122  Identities=16%  Similarity=0.139  Sum_probs=69.4

Q ss_pred             HHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHH--HHHHHHHhhhhhhhhhhhcccccCCc-
Q 015377          259 GLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQ------SNILLTAL--LSGARMFSMGTFIIANIFAPEIYPTS-  328 (408)
Q Consensus       259 g~~~~~~l~dr-~grR~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~el~p~~-  328 (408)
                      ..+++++++|+ +||++.+..+.++..+....+....      .......+  +.+......+.-+.......|.|+.+ 
T Consensus        39 ~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~  118 (654)
T TIGR00926        39 TPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ  118 (654)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc
Confidence            45678899997 5999888776555433222222110      00111111  11111111112244555666777643 


Q ss_pred             --hhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc-------chhhHHHHHHHHHHHHHHHHH
Q 015377          329 --MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-------HQTAAILLLEALIVLSVVVIL  380 (408)
Q Consensus       329 --~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~-------~~~~~~~~~~~~~~i~~~~~~  380 (408)
                        .|-..+.+.++.+++|+++++.+.+++.+..       +....|.+.+++++++.++..
T Consensus       119 ~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       119 LSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence              4788999999999999999998888765332       234456666666666655544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.86  E-value=0.048  Score=44.40  Aligned_cols=84  Identities=14%  Similarity=0.136  Sum_probs=67.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchhh-hHHHhhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHVF-FSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   80 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~~-~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   80 (408)
                      .|.|+.++++.+.+.+.... -+-++.+.++.+-.+.|+|.+...+. ..|+.|...+++|++..+++-.....+.+.|.
T Consensus        64 lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~  142 (156)
T PF05978_consen   64 LGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGN  142 (156)
T ss_pred             HhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHH
Confidence            58899999999988865543 35677889999999999999986543 56888999999999999887777777778777


Q ss_pred             HHHhHh
Q 015377           81 ALAWIV   86 (408)
Q Consensus        81 ~l~~~~   86 (408)
                      .+.+.+
T Consensus       143 ~~~~~~  148 (156)
T PF05978_consen  143 LFLFFI  148 (156)
T ss_pred             HHHHHH
Confidence            766654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=95.82  E-value=0.036  Score=52.08  Aligned_cols=116  Identities=16%  Similarity=0.192  Sum_probs=88.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcchh-hhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|-|+++..+++++++..+..-+...-..+.++=.+.|...|+... +-+|+++..|+++-++..++++..--.++.++
T Consensus       314 rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~g  393 (438)
T COG2270         314 RFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLG  393 (438)
T ss_pred             HhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHH
Confidence            46889999999999998888777776666777888899999998754 45699999999999999999999999999999


Q ss_pred             HHHHhHhcc-ccchHHHHHHhhHHHHHHHHHHHhccCc
Q 015377           80 AALAWIVMP-ILTWRWLLALSAIPAFVLLIFIVFMPES  116 (408)
Q Consensus        80 ~~l~~~~~~-~~~Wr~~f~i~~i~~~~~~~~~~~lpES  116 (408)
                      |.+...+.+ ..+=|.-+....+..++.++...++|+.
T Consensus       394 p~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         394 PFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            988766543 3346665555444444445555566553

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=95.48  E-value=0.18  Score=51.43  Aligned_cols=109  Identities=17%  Similarity=0.106  Sum_probs=71.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCc---chhHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPN--------YISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN---RGKWMVVF   68 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~---Rg~~~~~~   68 (408)
                      +.||++.+.++.++..++-.+.+++..        ...++++=.+..+|.|+. +...+...|-.++++   |-....++
T Consensus        50 ~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~f  129 (654)
T TIGR00926        50 WLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFF  129 (654)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHH
Confidence            369999999999998888776665421        123455555566677664 344455666666543   44556677


Q ss_pred             HHHHHHHHHHHHHHHhHhcc-------ccchHHHHHHhhHHHHHHHHH
Q 015377           69 STFWTFGSVSEAALAWIVMP-------ILTWRWLLALSAIPAFVLLIF  109 (408)
Q Consensus        69 ~~~~~~G~~l~~~l~~~~~~-------~~~Wr~~f~i~~i~~~~~~~~  109 (408)
                      ..+.++|++++..+...+..       ..+|...|.+.++..++.++.
T Consensus       130 Y~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv  177 (654)
T TIGR00926       130 YFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV  177 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence            77778888887776655542       246999999988766554433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=95.45  E-value=0.6  Score=38.03  Aligned_cols=101  Identities=15%  Similarity=0.069  Sum_probs=61.8

Q ss_pred             HHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchh
Q 015377          251 ITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMR  330 (408)
Q Consensus       251 ~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R  330 (408)
                      +......+++++.+.+.+++|.|..++++.+.-.+......+.+......... +..+.....+..-..+..|..+.+.|
T Consensus        45 i~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~-l~G~~~a~lW~aqg~ylt~~s~~~~~  123 (156)
T PF05978_consen   45 ILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASA-LLGFGAALLWTAQGTYLTSYSTEETI  123 (156)
T ss_pred             HHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHhhhhHHhhHhhhHHHHHcCCHHHH
Confidence            33444566778899999999999999888776665544433332211111111 11222222334444566777778888


Q ss_pred             hHHHhHHHHhhhHhHhhHHHHH
Q 015377          331 STGAGVAYAVGRIGGMVCPLVA  352 (408)
Q Consensus       331 ~~a~gi~~~~~~~~~~~~p~~~  352 (408)
                      ++-.|+...+...+.+++.++.
T Consensus       124 ~~~~~ifw~i~~~s~i~G~~~~  145 (156)
T PF05978_consen  124 GRNTGIFWAIFQSSLIFGNLFL  145 (156)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            8888888887777666666544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.22  E-value=0.66  Score=44.27  Aligned_cols=91  Identities=18%  Similarity=0.121  Sum_probs=57.2

Q ss_pred             CCcchhHHHHHHHHHHH-HHHHHhhhhhHHHHH------------HHHHHhhccC---Ccch---hhhHHHhhhcCCCcc
Q 015377            1 MEEGRMSILGGALVTFV-AGLLSAFSPNYISLL------------ILRGLAGAGL---GSGH---VFFSWFMEFVPPSNR   61 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~-~~~~~~~~~~~~~l~------------~~R~l~Gi~~---g~~~---~~~~~~~E~~p~~~R   61 (408)
                      |+||||-++....+... +-++.+++.++..++            +.-++.|+..   +.+.   ..=+++++.+-.++|
T Consensus        97 r~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~  176 (498)
T KOG0637|consen   97 RYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK  176 (498)
T ss_pred             ccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh
Confidence            68999998887777764 446778877765432            2333444321   1211   122467777777666


Q ss_pred             hh-HHHHHHHHHHHHHHHHHHHHhHhccccchHHH
Q 015377           62 GK-WMVVFSTFWTFGSVSEAALAWIVMPILTWRWL   95 (408)
Q Consensus        62 g~-~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~   95 (408)
                      .+ +.+.+..+..+|..++..++.    ..+|+-.
T Consensus       177 ~~~Ans~f~~f~avGnvLGY~~g~----y~~~~~~  207 (498)
T KOG0637|consen  177 KTRANSVFSFFMAVGNVLGYALGS----YLGLYKI  207 (498)
T ss_pred             hhccchhHHHHHHhcceeeeeccc----ccCceEE
Confidence            66 889999999999887765543    4455543

>TIGR01272 gluP glucose/galactose transporter

Probab=95.15  E-value=0.16  Score=46.86  Aligned_cols=75  Identities=20%  Similarity=0.293  Sum_probs=52.8

Q ss_pred             hhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc----------------chhhHHHHHHHHHHHHHH
Q 015377          314 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC----------------HQTAAILLLEALIVLSVV  377 (408)
Q Consensus       314 ~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~----------------~~~~~~~~~~~~~~i~~~  377 (408)
                      .+....+.+++.|.+.+++..++..++..+|.+++|++...+....                ....+|++++...++..+
T Consensus        28 q~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        28 QVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             HhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566778889999999999999999999999999999998766321                234566656555444433


Q ss_pred             HH-HhcccccCC
Q 015377          378 VI-LLIPFETKG  388 (408)
Q Consensus       378 ~~-~~~~~et~~  388 (408)
                      .. ..-.||.+.
T Consensus       108 ~~~~~~~p~~~~  119 (310)
T TIGR01272       108 IFAFLPLPELQE  119 (310)
T ss_pred             HHHHccCCCCCc
Confidence            33 334456544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=94.98  E-value=0.56  Score=44.21  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=51.5

Q ss_pred             hhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHH--HHHHHHHhcccccCCccc
Q 015377          314 FIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIV--LSVVVILLIPFETKGKEL  391 (408)
Q Consensus       314 ~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~et~~~~~  391 (408)
                      .+...+..+|..|.+.|+++.++.+..--+|-+++..+.+.+.+......-.-++..+.+  +...+...+..|.|..+.
T Consensus       107 ~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~  186 (403)
T PF03209_consen  107 GTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRR  186 (403)
T ss_pred             HHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccc
Confidence            355677889999999999999999999888888888888877765433222222222222  222333455557665544


Q ss_pred             c
Q 015377          392 V  392 (408)
Q Consensus       392 ~  392 (408)
                      .
T Consensus       187 ~  187 (403)
T PF03209_consen  187 A  187 (403)
T ss_pred             c
Confidence            4

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.24  E-value=2.6  Score=37.27  Aligned_cols=56  Identities=14%  Similarity=0.291  Sum_probs=37.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHhHhc-----cccchHHHHHHhhHHHHHHHHHHHhc
Q 015377           58 PSNRGKWMVVFSTFWTFGSVSEAALAWIVM-----PILTWRWLLALSAIPAFVLLIFIVFM  113 (408)
Q Consensus        58 ~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~~-----~~~~Wr~~f~i~~i~~~~~~~~~~~l  113 (408)
                      .|+|+..+.+...++++|.++....-..-.     -..+||+.+.+.++..++-++.+..+
T Consensus         1 ~k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    1 QKKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CCccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            367888888888899999987654322211     13469999998887766655544443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=93.99  E-value=0.81  Score=40.88  Aligned_cols=104  Identities=25%  Similarity=0.256  Sum_probs=58.6

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhhhhhhhhhhhcccccCC-ch
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS--NILLTALLSGARMFSMGTFIIANIFAPEIYPT-SM  329 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~-~~  329 (408)
                      .+....+.+..|.+.||.|||+.+..+...............+  ............+......+....+.+|.+|. +.
T Consensus        49 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  128 (338)
T COG0477          49 FLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE  128 (338)
T ss_pred             HHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH
Confidence            3444556689999999999997776655431221111112121  11111111111222223446677888899998 67


Q ss_pred             hhHHHhHHHH-hhhHhHhhHHHHHHHHh
Q 015377          330 RSTGAGVAYA-VGRIGGMVCPLVAVGLV  356 (408)
Q Consensus       330 R~~a~gi~~~-~~~~~~~~~p~~~~~l~  356 (408)
                      |+...+.... ...++..++|.+...+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (338)
T COG0477         129 RGLAVGLVTLGAGALGLALGPLLAGLLL  156 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888777 45566777775554443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=93.33  E-value=8.9  Score=37.73  Aligned_cols=42  Identities=14%  Similarity=-0.056  Sum_probs=37.2

Q ss_pred             hhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhh
Q 015377          316 IANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVT  357 (408)
Q Consensus       316 ~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~  357 (408)
                      ..|.+..|+++.+...+-+++....+++|.++++.+..++.+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999999999999877766544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=92.79  E-value=4.2  Score=36.22  Aligned_cols=81  Identities=25%  Similarity=0.318  Sum_probs=47.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcch-hhhHH-HhhhcCCCcchhH---H-HHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-VFFSW-FMEFVPPSNRGKW---M-VVFSTFWTFG   75 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~-~~E~~p~~~Rg~~---~-~~~~~~~~~G   75 (408)
                      .|||+.-..-++.++++ .++-.+|.|-.++++|.+-|++...-. ..-+| ++|.-.  +||.-   . ..+.=+..+|
T Consensus        99 qGRKracvtycitYiLs-CiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffg  175 (454)
T KOG4332|consen   99 QGRKRACVTYCITYILS-CITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFG  175 (454)
T ss_pred             hccccceeeehHHHHHH-HHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhh
Confidence            58888654444444433 346678899999999999999877643 33455 557653  33322   2 2233333445


Q ss_pred             HHHHHHHHhH
Q 015377           76 SVSEAALAWI   85 (408)
Q Consensus        76 ~~l~~~l~~~   85 (408)
                      ..+.+.+++.
T Consensus       176 NglvAiiaGl  185 (454)
T KOG4332|consen  176 NGLVAIIAGL  185 (454)
T ss_pred             ccHHHHHHHH
Confidence            5444444444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=92.40  E-value=9.8  Score=36.34  Aligned_cols=125  Identities=14%  Similarity=0.120  Sum_probs=62.0

Q ss_pred             HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHh
Q 015377          261 LTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAV  340 (408)
Q Consensus       261 ~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~  340 (408)
                      +....+.|.+|-|++++.+.+...+.-..+.+.++-......-+... ...+.-...+.|.=-..|++.--++.+.+.+.
T Consensus        59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg-~~~a~evay~sYiys~v~~~~yq~vts~~raa  137 (412)
T PF01770_consen   59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYG-LATAAEVAYYSYIYSVVDKEHYQKVTSYTRAA  137 (412)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHH-HHHHHHHHHHHHheeecCHHHHHHHHHHHHHH
Confidence            45568899999999998876654443333333332221111111111 11122223334444445676666777777776


Q ss_pred             hhHhHhhHHHHHHHHhhhcc-hhhHHHHHH-HHHHHHHHHHHhccccc
Q 015377          341 GRIGGMVCPLVAVGLVTSCH-QTAAILLLE-ALIVLSVVVILLIPFET  386 (408)
Q Consensus       341 ~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~-~~~~i~~~~~~~~~~et  386 (408)
                      .-+|.+++..+...++...+ .+.....+. +...++.++.+++|+-.
T Consensus       138 ~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~  185 (412)
T PF01770_consen  138 TLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK  185 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            65665565554433333222 222222223 33456666667776543

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=91.64  E-value=16  Score=36.73  Aligned_cols=117  Identities=14%  Similarity=0.173  Sum_probs=70.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhhh-------------------------HHHHHHHHHHhhccCCcc-hhhhHHHhhh
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSPN-------------------------YISLLILRGLAGAGLGSG-HVFFSWFMEF   55 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~   55 (408)
                      .||-+++.++.++..++..+..++..                         ...++.+.-+..+|.|+- +....+-+|-
T Consensus       101 ~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQ  180 (571)
T KOG1237|consen  101 LGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQ  180 (571)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccc
Confidence            47888899888888877543322211                         124555555666676653 3333343454


Q ss_pred             cC----CCcch--hHHHHHHHHHHHHHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhH
Q 015377           56 VP----PSNRG--KWMVVFSTFWTFGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYL  120 (408)
Q Consensus        56 ~p----~~~Rg--~~~~~~~~~~~~G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l  120 (408)
                      .+    ++.++  ..+.++.+..+.|..++..+.-.+-++.+|.+-|.+..+..++.++.  +++-+|.|-
T Consensus       181 fd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~i--F~~g~~~y~  249 (571)
T KOG1237|consen  181 FDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILI--FLPGFPFYR  249 (571)
T ss_pred             cCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHH--HHcCceeEE
Confidence            44    33344  55678888888888887655444446789999998876655443332  334445444

>PF12832 MFS_1_like: MFS_1 like family

Probab=90.98  E-value=3.8  Score=28.81  Aligned_cols=37  Identities=14%  Similarity=0.130  Sum_probs=27.5

Q ss_pred             hHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHH
Q 015377          244 SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF  280 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~  280 (408)
                      .+.....+.-+..+++..+.|.++||.+|++..+...
T Consensus        36 ~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~   72 (77)
T PF12832_consen   36 QIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS   72 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence            3344444555778889999999999999998776543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=90.81  E-value=1.2  Score=42.31  Aligned_cols=64  Identities=23%  Similarity=0.216  Sum_probs=53.9

Q ss_pred             hhhhhHHHHHHHHHHhhccCCcchh-hhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhHh
Q 015377           23 AFSPNYISLLILRGLAGAGLGSGHV-FFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIV   86 (408)
Q Consensus        23 ~~~~~~~~l~~~R~l~Gi~~g~~~~-~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~   86 (408)
                      -+.++.+..++.-+..|+-.|..++ .+..+.|-.|+++|...++....+-++|.+++.+++..+
T Consensus       330 ~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  330 RFIPSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4568889999999999998888765 355577888999999999999999999999998887654

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.66  E-value=17  Score=35.24  Aligned_cols=36  Identities=11%  Similarity=0.104  Sum_probs=25.3

Q ss_pred             hhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHH
Q 015377          315 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPL  350 (408)
Q Consensus       315 ~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~  350 (408)
                      +....+.++..+++.|-.+..+...+-.+|-.++..
T Consensus       391 s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~  426 (437)
T TIGR00939       391 SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAV  426 (437)
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667788888888888877777666555555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=89.89  E-value=21  Score=35.01  Aligned_cols=37  Identities=3%  Similarity=-0.016  Sum_probs=31.5

Q ss_pred             HHHhhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhHh
Q 015377           50 SWFMEFVPPSNRGKWMVVFSTFWTFGSVSEAALAWIV   86 (408)
Q Consensus        50 ~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~~l~~~~   86 (408)
                      .+..|.+..++=.|..+++..+-++|.++++.+...+
T Consensus       152 ~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~  188 (472)
T TIGR00769       152 GFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYF  188 (472)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467999999988999999999999999999776554

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=87.79  E-value=2.8  Score=37.68  Aligned_cols=109  Identities=10%  Similarity=0.010  Sum_probs=65.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSEA   80 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~~   80 (408)
                      .||+.....+.++..+.+- ..+.-++..-++.-.+.|++...- ....+.++-..|.++-|+.-++.+...++|....+
T Consensus       327 ~G~n~~wv~~a~~~tl~~H-~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~  405 (459)
T KOG4686|consen  327 YGFNLWWVASACILTLLGH-SGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIP  405 (459)
T ss_pred             hcceehhHHHHHHHHHHHh-hhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHh
Confidence            4555554444444433332 122233444456666777765432 12234456777999999999999999999999999


Q ss_pred             HHHhHhccccc---hHHHHH-HhhHHHHHHHHHHH
Q 015377           81 ALAWIVMPILT---WRWLLA-LSAIPAFVLLIFIV  111 (408)
Q Consensus        81 ~l~~~~~~~~~---Wr~~f~-i~~i~~~~~~~~~~  111 (408)
                      .++..+.+..|   |-=.|. +.+..++......+
T Consensus       406 Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~  440 (459)
T KOG4686|consen  406 IIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF  440 (459)
T ss_pred             hhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence            99998876554   433443 33444544433333

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=86.58  E-value=28  Score=32.62  Aligned_cols=132  Identities=16%  Similarity=0.091  Sum_probs=68.4

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP  326 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p  326 (408)
                      +.+.+..++--..+.+..++.+|+|.++.+..+.+..++-.. +-...+......-...........+.+.....-|-||
T Consensus        51 lLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~-iR~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp  129 (395)
T COG2807          51 LLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGIL-IRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP  129 (395)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc
Confidence            333444444445667788899999988877665444333221 1111111111000011111112223344555668898


Q ss_pred             CchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc-chhhHHHHHHHHHHHHHHHHH
Q 015377          327 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVVVIL  380 (408)
Q Consensus       327 ~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~  380 (408)
                      .+. +...|+-...-.+++.+++-+..++.+.. ++.....+.+..++++.++.+
T Consensus       130 k~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         130 KRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL  183 (395)
T ss_pred             cch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence            875 44455555555556666665555555443 456677777777777655543

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=83.87  E-value=7.8  Score=36.62  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=49.0

Q ss_pred             hhhhhhcccccCCc---hhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHh
Q 015377          315 IIANIFAPEIYPTS---MRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILL  381 (408)
Q Consensus       315 ~~~~~~~~el~p~~---~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~  381 (408)
                      +......+|.|+.+   .|..++..-+..-++|+.+++...+++.+..++...|.+.++..+++.+..+.
T Consensus        52 ~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   52 PNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            45566678888765   57888889999999999999888887776666666777766666666554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=80.40  E-value=20  Score=35.13  Aligned_cols=23  Identities=4%  Similarity=0.190  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHhcccccC
Q 015377          365 ILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       365 ~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      ..+.|.+.++..+.+.++.+|..
T Consensus       203 l~fwg~~~l~~T~~v~~~k~E~~  225 (544)
T PF13000_consen  203 LKFWGWVFLIVTILVAFFKKEKP  225 (544)
T ss_pred             HHHHHHHHHHHHHHHheEeeccc
Confidence            34677777777778788877643

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	408
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-05

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 92  WRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKI 136
           WR++ A   IPA + L+ +  +PESPR+L ++G+   A  IL KI
Sbjct: 199 WRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKI 243
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	7e-09

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 56.2 bits (136), Expect = 7e-09
 Identities = 61/397 (15%), Positives = 115/397 (28%), Gaps = 82/397 (20%)

Query: 7   SILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSGH-----VFFSWFMEFVPPSNR 61
            ++  A V    G +   + +   + +L  L G   G G          W+        R
Sbjct: 98  GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----SQKER 153

Query: 62  GKWMVVFSTFWTFGSVSEAALAWIVMPILT-WRWLLALSAIPAFVLLIFI-VFMPESPRY 119
           G  + V++     G      L  + M     W   L + A  A ++ +F    M ++P+ 
Sbjct: 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ- 212

Query: 120 LCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTV 179
                                   LP      +   D   E +  E T            
Sbjct: 213 ---------------------SCGLPPIEEYKNDYPDDYNEKAEQELTA----------- 240

Query: 180 RKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYY--------GIVLLASELSGSQSKCS 231
                     +   +       LW +   N FVY             L      +  K S
Sbjct: 241 ---KQIFMQYVLPNKL------LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSS 291

Query: 232 SSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCI-----F 286
            +  L E               +A +PG L    + D+V R         F+ +      
Sbjct: 292 WAYFLYE---------------YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 336

Query: 287 LLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGM 346
           +  +    +  +    +        G  ++  + A E+ P     T AG     G +GG 
Sbjct: 337 VYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 396

Query: 347 VC-PLVAVGLVTSCHQTAAILLLEALIVLSVVVILLI 382
           V    +    V         +++    +L+V++++++
Sbjct: 397 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.95
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.9
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.86
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.83
2xut_A	524	Proton/peptide symporter family protein; transport	99.81
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.36
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.24
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.24
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.11
2xut_A	524	Proton/peptide symporter family protein; transport	99.06
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.73
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.29

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=8.4e-42  Score=334.18  Aligned_cols=359  Identities=21%  Similarity=0.274  Sum_probs=252.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHhhccCCcch-hhhHHHhhhcCCCcc
Q 015377            1 MEEGRMSILGGALVTFVAGLLSA------------------FSPNYISLLILRGLAGAGLGSGH-VFFSWFMEFVPPSNR   61 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~~~R   61 (408)
                      |.|||++++++.+++.+++++++                  +++|+++++++|+++|+|.|+.. +...|++|++|+++|
T Consensus        81 r~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~r  160 (491)
T 4gc0_A           81 RFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIR  160 (491)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhh
Confidence            57999999999999999999998                  48899999999999999999874 567789999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHhcc--------ccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHH
Q 015377           62 GKWMVVFSTFWTFGSVSEAALAWIVMP--------ILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNIL  133 (408)
Q Consensus        62 g~~~~~~~~~~~~G~~l~~~l~~~~~~--------~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l  133 (408)
                      |+..++.+.++..|.++++.+++....        .+.||+++.+..++.++.++..+++||||+||..|+|.||+++.+
T Consensus       161 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l  240 (491)
T 4gc0_A          161 GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGIL  240 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhH
Confidence            999999999999999999888776532        357999999999999998889999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHH
Q 015377          134 DKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVY  213 (408)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (408)
                      ++.+..+..+               ++..  +.+.    ..+   ..++..... ..+..+  +.........+.+...+
T Consensus       241 ~~~~~~~~~~---------------~~~~--~~~~----~~~---~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~  293 (491)
T 4gc0_A          241 RKIMGNTLAT---------------QAVQ--EIKH----SLD---HGRKTGGRL-LMFGVG--VIVIGVMLSIFQQFVGI  293 (491)
T ss_dssp             HHHHHHHHHH---------------HHHH--HHHH----HHH---HHHHHTTHH-HHSCCT--HHHHHHHHHHHHHHTCH
T ss_pred             HHhcCCchhH---------------HHHH--HHHH----HHH---hhhhhhhHH-HHhccc--HHHHHHHHHHHHHHhhh
Confidence            9877543211               0000  0000    000   000000011 111111  11112222222222233


Q ss_pred             HHHHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh-
Q 015377          214 YGIVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT-  292 (408)
Q Consensus       214 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~-  292 (408)
                      +....+.+.+....           ............+.++..+++.++++++.||+|||+.++.+.....+.++.+.. 
T Consensus       294 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~  362 (491)
T 4gc0_A          294 NVVLYYAPEVFKTL-----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA  362 (491)
T ss_dssp             HHHHHHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhcchHHHHhc-----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHH
Confidence            33333333332111           112223344555667788899999999999999999998776666554443322 


Q ss_pred             --hh-hhHHHH-HHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhh------cchh
Q 015377          293 --LQ-SNILLT-ALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS------CHQT  362 (408)
Q Consensus       293 --~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~------~~~~  362 (408)
                        .. ...... ........+..+..++.|.+.+|+||+++|+++.|++++++++++++++.+.+.+.+.      .+..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~  442 (491)
T 4gc0_A          363 FYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG  442 (491)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC
T ss_pred             HhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence              11 112221 2222223334455678899999999999999999999999999999999888765432      2234


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccccCCccccccccc
Q 015377          363 AAILLLEALIVLSVVVILLIPFETKGKELVNTIDG  397 (408)
Q Consensus       363 ~~~~~~~~~~~i~~~~~~~~~~et~~~~~~~~~~~  397 (408)
                      ..+.+++++++++.++.+++.||||||++||+++.
T Consensus       443 ~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~  477 (491)
T 4gc0_A          443 FSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL  477 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence            56788999999999999999999999999998764

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.95  E-value=1.6e-26  Score=223.08  Aligned_cols=331  Identities=15%  Similarity=0.210  Sum_probs=218.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAF----SPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFG   75 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G   75 (408)
                      |.|||++++++.++..++.++.++    ++|++.++++|++.|++.|.. +....++.|++|+++|++.+++.+.+..+|
T Consensus        88 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  167 (451)
T 1pw4_A           88 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  167 (451)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHH
Confidence            479999999999999999999999    999999999999999998875 456778999999999999999999999999


Q ss_pred             HHHHHHHHhHhccccc-hHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377           76 SVSEAALAWIVMPILT-WRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  153 (408)
Q Consensus        76 ~~l~~~l~~~~~~~~~-Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  153 (408)
                      .++++.++..+.+..+ ||+.|++.++..++. ++..+++||+|+....+++.++                       + 
T Consensus       168 ~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~-  223 (451)
T 1pw4_A          168 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------------------K-  223 (451)
T ss_dssp             HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------------------C-
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------------------c-
Confidence            9999999877667777 999999998877665 4556788999874311100000                       0 


Q ss_pred             CCCcccccCCCCCccccccccccccccccccch--hhhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 015377          154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSS--FLMLFS-PRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKC  230 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  230 (408)
                      +.+ +++   .+++     . ++    +...+.  .+..++ ++.+    ......+.....+++...+.|....+.   
T Consensus       224 ~~~-~~~---~~~~-----~-~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---  282 (451)
T 1pw4_A          224 NDY-PDD---YNEK-----A-EQ----ELTAKQIFMQYVLPNKLLW----YIAIANVFVYLLRYGILDWSPTYLKEV---  282 (451)
T ss_dssp             CC---------------------------CCTHHHHHHTSSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHBTTB---
T ss_pred             ccc-ccc---chhh-----h-hc----ccccccchHHHHHcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            000 000   0000     0 00    000001  122222 2222    222333333444455555555443211   


Q ss_pred             CcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhh--chHHHHHHHHHHHH-HHHHHHHhhh--hhHHHHHHHHH
Q 015377          231 SSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRV--GRKLSMTIMFIFVC-IFLLPLVTLQ--SNILLTALLSG  305 (408)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~--grR~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~  305 (408)
                             .+.+............++.+++.++.+++.||+  |||+.+..+..+.. +.+..+....  +..........
T Consensus       283 -------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (451)
T 1pw4_A          283 -------KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIV  355 (451)
T ss_dssp             -------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHH
T ss_pred             -------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence                   011112223334455677889999999999999  99988877655544 3333222221  22222222222


Q ss_pred             HHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhH-hHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcc
Q 015377          306 ARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRI-GGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIP  383 (408)
Q Consensus       306 ~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~-~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  383 (408)
                      ..++..+..+..+.+..|.+|++.|+++.|+.+.+.++ |+.++|.+.+.+.+..+....+.+.+++++++.+..+++.
T Consensus       356 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          356 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344566678889999999999999999999999 9999999999888876666677777877777777666654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=8.7e-24  Score=203.16  Aligned_cols=305  Identities=14%  Similarity=0.058  Sum_probs=198.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLS---AFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGS   76 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~   76 (408)
                      |.|||++++++.++..++.++.   +++++++.++++|++.|++.|.. +....++.|+.|+++|++.+++.+.+..+|.
T Consensus        87 r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  166 (438)
T 3o7q_A           87 KLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA  166 (438)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999   88999999999999999999876 4567789999999999999999999999999


Q ss_pred             HHHHHHHhHhc-cccc-------------------------hHHHHHHhhHHHHHHHHHHH--hccCcchhHhhcCChhh
Q 015377           77 VSEAALAWIVM-PILT-------------------------WRWLLALSAIPAFVLLIFIV--FMPESPRYLCTKGRITD  128 (408)
Q Consensus        77 ~l~~~l~~~~~-~~~~-------------------------Wr~~f~i~~i~~~~~~~~~~--~lpESp~~l~~~~~~~~  128 (408)
                      ++++.++..+. +..+                         ||+.|++.++..++..+..+  ..||+++..        
T Consensus       167 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------  238 (438)
T 3o7q_A          167 IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN--------  238 (438)
T ss_dssp             HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC--------
T ss_pred             HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--------
Confidence            99999988776 4443                         99999887776655443333  345543200        


Q ss_pred             HHHHHHHHHHHcCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccc-hhhHHHHHHHHHHHH
Q 015377          129 AHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFS-PRFFKTTILLWVLYF  207 (408)
Q Consensus       129 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  207 (408)
                                    +       +      ++     +++.              .....+.+++ ++.+... +..   +
T Consensus       239 --------------~-------~------~~-----~~~~--------------~~~~~~~~~~~~~~~~~~-~~~---~  268 (438)
T 3o7q_A          239 --------------H-------S------DA-----KQGS--------------FSASLSRLARIRHWRWAV-LAQ---F  268 (438)
T ss_dssp             --------------C-------C------CS-----STTS--------------HHHHHHHHTTCSHHHHHH-HHH---H
T ss_pred             --------------c-------c------cc-----cccc--------------hhhhHHHHHhChHHHHHH-HHH---H
Confidence                          0       0      00     0000              0011222332 3333222 221   1


Q ss_pred             HHHHHHHHHHHHHHhh-hccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Q 015377          208 GNSFVYYGIVLLASEL-SGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIF  286 (408)
Q Consensus       208 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~  286 (408)
                      .....+++...+.+.. ..+.          .+.+............+..+++.++.++++||+|||+.+..+.++..+.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  338 (438)
T 3o7q_A          269 CYVGAQTACWSYLIRYAVEEI----------PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL  338 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS----------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcc----------CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            2222223333333322 2110          0111122223334456778889999999999999999998877766665


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHH
Q 015377          287 LLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAI  365 (408)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~  365 (408)
                      ++......+....... ....++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..+ ....+
T Consensus       339 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~  415 (438)
T 3o7q_A          339 CLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAE  415 (438)
T ss_dssp             HHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGG
T ss_pred             HHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            5544443333322222 2223333445677888889999987 899998887 778999999999998888766 55566


Q ss_pred             HHHHHHHHHHH
Q 015377          366 LLLEALIVLSV  376 (408)
Q Consensus       366 ~~~~~~~~i~~  376 (408)
                      .+.+++.++..
T Consensus       416 ~~~~~~~~~~~  426 (438)
T 3o7q_A          416 LIPALCFAVIF  426 (438)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            65554444443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.90  E-value=5.5e-23  Score=200.74  Aligned_cols=357  Identities=12%  Similarity=0.016  Sum_probs=191.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCc--chhHHHHHHHHHHHHHHH
Q 015377            2 EEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSN--RGKWMVVFSTFWTFGSVS   78 (408)
Q Consensus         2 ~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~~G~~l   78 (408)
                      .|||+++..+.++..++.++.++++|++.++++|++.|++.|.. +....++.|++|+++  |+...+.++.+..+|..+
T Consensus        82 ~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  161 (491)
T 4aps_A           82 IGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI  161 (491)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999998876 456778999999999  777788899999999999


Q ss_pred             HHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhc-cCcc----hhHhhcCChhhHHHHHHH--------------HHHH
Q 015377           79 EAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFM-PESP----RYLCTKGRITDAHNILDK--------------IAQF  139 (408)
Q Consensus        79 ~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~l-pESp----~~l~~~~~~~~a~~~l~~--------------~~~~  139 (408)
                      ++.++..+.+..+||+.|++.++..++..+..++. |+..    +--..+.+.++.++..++              ....
T Consensus       162 ~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~  241 (491)
T 4aps_A          162 APLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLV  241 (491)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999888888899999999877665544333222 2211    000011122222222222              0111


Q ss_pred             cCCCCCCCCccCCCCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHH----
Q 015377          140 NQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYG----  215 (408)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  215 (408)
                      ++.+             .++.....................++.  .......++..+ ....+...+.....+..    
T Consensus       242 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  305 (491)
T 4aps_A          242 GWNS-------------LPAYINLLTIVAIAIPVFYFAWMISSV--KVTSTEHLRVVS-YIPLFIAAVLFWAIEEQGSVV  305 (491)
T ss_dssp             SSCC-------------TTHHHHHHHHHHHHHHHHHHHHHC--------------CTT-HHHHHHHHHHHHHHHGGGGTH
T ss_pred             cCcc-------------cccchhhhhHHHHHHHHHHHHHHhhcc--cccHHHHHHHHH-HHHHHHHHHHHHHHHhhccHH
Confidence            1000             000000000000000000000000000  000000000000 11111111111111111    


Q ss_pred             HHHHHHhhhccCCCCCcccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHH-----HHHHHHHHHHHHH
Q 015377          216 IVLLASELSGSQSKCSSSILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMT-----IMFIFVCIFLLPL  290 (408)
Q Consensus       216 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~-----~~~~~~~~~~~~~  290 (408)
                      ...+....... +.          ....   .......+..+++..+.+++.||+|||+...     .+..+..+.+..+
T Consensus       306 ~~~~~~~~~~~-~~----------~~~~---~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~  371 (491)
T 4aps_A          306 LATFAAERVDS-SW----------FPVS---WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLM  371 (491)
T ss_dssp             HHHHHHHSCCC-SS----------SCSG---GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhcc-Cc----------cCHH---HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH
Confidence            11111111100 00          0000   1112233455667788899999999986543     3333333322222


Q ss_pred             Hhhh---------hhHHHHHHHHHHHHHhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcch
Q 015377          291 VTLQ---------SNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQ  361 (408)
Q Consensus       291 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~  361 (408)
                      ....         +............+......+..+.+..|.+|++.|+++.|+.+....+|+.++|.+.+.+.+ .+.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~  450 (491)
T 4aps_A          372 AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSE  450 (491)
T ss_dssp             HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SST
T ss_pred             HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccH
Confidence            2111         112222222222222223356678899999999999999999999999999999988775544 344


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccccCCc
Q 015377          362 TAAILLLEALIVLSVVVILLIPFETKGK  389 (408)
Q Consensus       362 ~~~~~~~~~~~~i~~~~~~~~~~et~~~  389 (408)
                      ...+.+++++++++.+..+++.++++++
T Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          451 VAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             THHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677888888888888888888777665

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.86  E-value=1.9e-21  Score=183.02  Aligned_cols=287  Identities=14%  Similarity=0.101  Sum_probs=179.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFGSVSE   79 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G~~l~   79 (408)
                      |.|||+.+..+.++..++.++.++++|+..+++.|++.|++.+.. +....++.|+.|+++|++..+..+....+|..++
T Consensus        61 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  140 (375)
T 2gfp_A           61 RVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLA  140 (375)
T ss_dssp             TSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHH
T ss_pred             HhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            679999999999999999999999999999999999999998875 4556788999999999999999999999999999


Q ss_pred             HHHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCCCCCcc
Q 015377           80 AALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLD  158 (408)
Q Consensus        80 ~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  158 (408)
                      +.++..+.+..+||+.|++.++..++..+ ..+++||+|+..   ++                              + +
T Consensus       141 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------~-~  186 (375)
T 2gfp_A          141 PLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---AP------------------------------R-T  186 (375)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---CC------------------------------C-C
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---cc------------------------------c-c
Confidence            99999888878999999998887766544 456778876521   00                              0 0


Q ss_pred             cccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcccccc
Q 015377          159 EEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLS  237 (408)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  237 (408)
                      +     +               +   +..+..+ +++.+    ......+.....++....+.|....+.          
T Consensus       187 ~-----~---------------~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  229 (375)
T 2gfp_A          187 R-----L---------------L---TSYKTLFGNSGFN----CYLLMLIGGLAGIAAFEACSGVLMGAV----------  229 (375)
T ss_dssp             C-----T---------------T---TCSTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCSCSSHHH----------
T ss_pred             c-----H---------------H---HHHHHHhcCcchH----HHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence            0     0               0   0011111 12221    122222223333333333333221100          


Q ss_pred             cCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHH-HHHHHHHHHHHh--hhhhHHHHHHHHHHHHHhhhhh
Q 015377          238 ENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMF-IFVCIFLLPLVT--LQSNILLTALLSGARMFSMGTF  314 (408)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  314 (408)
                      .+.+............++.+++.++.+++.||.+||....... ...+........  ..+............+......
T Consensus       230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~  309 (375)
T 2gfp_A          230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLF  309 (375)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhh
Confidence            0001111112223334556677777777778877733222211 111111111111  1122222122222222223345


Q ss_pred             hhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc
Q 015377          315 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC  359 (408)
Q Consensus       315 ~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~  359 (408)
                      +....+..|.+| +.|+++.|+.+..+.+|+.++|.+.+.+.+..
T Consensus       310 ~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  353 (375)
T 2gfp_A          310 PLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG  353 (375)
T ss_dssp             STTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred             HHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            677788899999 89999999999999999999998887766543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.83  E-value=3.9e-20  Score=176.83  Aligned_cols=333  Identities=12%  Similarity=0.073  Sum_probs=180.6

Q ss_pred             CCcchhHHHHHHHHHHHHH---HHHhhhhhHH-HHHHHHHHhhccCCcch-hhhHHHhhhcCC--CcchhHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAG---LLSAFSPNYI-SLLILRGLAGAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFSTFWT   73 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~---~~~~~~~~~~-~l~~~R~l~Gi~~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~~   73 (408)
                      |.|||+.++.+..++.++.   ...++++... .++.+|++.|++.|... .......++.++  ++||...+..+....
T Consensus        69 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  148 (417)
T 2cfq_A           69 KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGC  148 (417)
T ss_dssp             TSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTT
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHH
Confidence            6899999999888775432   1223333222 24567777777666432 222222333332  456766677766777


Q ss_pred             HHHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377           74 FGSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  153 (408)
Q Consensus        74 ~G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  153 (408)
                      +|..+++.++..+.+ .+||+.|++.+++.++..+..++.||+|+.   +.+.+                        + 
T Consensus       149 ~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------------~-  199 (417)
T 2cfq_A          149 VGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVA------------------------N-  199 (417)
T ss_dssp             THHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSS------------------------S-
T ss_pred             HHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc---ccccc------------------------c-
Confidence            888888887776654 579999998887765554444444443310   00000                        0 


Q ss_pred             CCCcccccCCCCCccccccccccccccccccchhhhcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 015377          154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLF-SPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  232 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  232 (408)
                       .  ++    .+++             +...+..+.++ +++.+....    ..+.....++....+.|......     
T Consensus       200 -~--~~----~~~~-------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----  250 (417)
T 2cfq_A          200 -A--VG----ANHS-------------AFSLKLALELFRQPKLWFLSL----YVIGVSCTYDVFDQQFANFFTSF-----  250 (417)
T ss_dssp             -S--SS----SCCC-------------CCCHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             -c--cc----cccc-------------cccHHHHHHHhcCCchhhHHH----HHHHHHHHHHHHHHHHHHHHHHH-----
Confidence             0  00    0000             00001112222 233332221    11111112222211122111000     


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 015377          233 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMG  312 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
                        ................+..+..+++.++.++++||+|||+.+..+..+..+.........+............+....
T Consensus       251 --~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  328 (417)
T 2cfq_A          251 --FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPF  328 (417)
T ss_dssp             --SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHH
T ss_pred             --HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence              000000011112223344466778899999999999999988776665555443333322222221111111111122


Q ss_pred             hhhhhhhhcccccCCchhhHHHhHH-HHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccc
Q 015377          313 TFIIANIFAPEIYPTSMRSTGAGVA-YAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL  391 (408)
Q Consensus       313 ~~~~~~~~~~el~p~~~R~~a~gi~-~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~  391 (408)
                      ..+..+.+.+|.+|++.|+++.|+. +..+++|++++|.+.+.+.+..+....|.+++++++++.+..+++.||+|..++
T Consensus       329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~  408 (417)
T 2cfq_A          329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence            2344578899999999999999996 667779999999999887776555566778888888888877777788776554


Q ss_pred             cc
Q 015377          392 VN  393 (408)
Q Consensus       392 ~~  393 (408)
                      -.
T Consensus       409 ~~  410 (417)
T 2cfq_A          409 LR  410 (417)
T ss_dssp             SS
T ss_pred             HH
Confidence            43

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.81  E-value=2.4e-19  Score=176.36  Aligned_cols=111  Identities=16%  Similarity=0.062  Sum_probs=96.2

Q ss_pred             CC-cchhHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHH---HHHHHHH
Q 015377            1 ME-EGRMSILGGALVTFVAGLLSAFSP-NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV---FSTFWTF   74 (408)
Q Consensus         1 ~~-gRr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~~   74 (408)
                      |. |||+.+..+.++..++.++.++++ ++..++++|++.|++.|.. +....++.|++|+++|++..+.   .+....+
T Consensus        80 r~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~  159 (524)
T 2xut_A           80 RFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF  159 (524)
T ss_dssp             TSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence            46 999999999999999999999999 9999999999999998876 4567789999999999887766   8888999


Q ss_pred             HHHHHHHHHhHhccccchHHHHHHhhHHHHHHHHHHH
Q 015377           75 GSVSEAALAWIVMPILTWRWLLALSAIPAFVLLIFIV  111 (408)
Q Consensus        75 G~~l~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~~~  111 (408)
                      |.++++.++..+.+..+||+.|++.++..++..+..+
T Consensus       160 g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          160 GSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988887778999999998877665544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.36  E-value=4.6e-11  Score=114.60  Aligned_cols=142  Identities=14%  Similarity=0.047  Sum_probs=103.5

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT----LQSNILLTALLSGARMFSMGTFIIANIFAP  322 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (408)
                      ....+..+...++.++.|+++||+|||+.++.+.++.++..+....    ..+........+...++.....+....+.+
T Consensus        66 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~  145 (451)
T 1pw4_A           66 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV  145 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHH
Confidence            3344556777889999999999999999998887777665554444    333222222222333333344566778899


Q ss_pred             cccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcc-hhhHHHHHHHHHHHHHHHHHhcccccCC
Q 015377          323 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH-QTAAILLLEALIVLSVVVILLIPFETKG  388 (408)
Q Consensus       323 el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~et~~  388 (408)
                      |.+|.+.|+++.|+.+....+|.+++|.+.+.+.+..+ +...+.+.++++++..+..++..||++.
T Consensus       146 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  212 (451)
T 1pw4_A          146 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ  212 (451)
T ss_dssp             TTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred             HHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence            99999999999999999999999999998887776666 6677888887777777776666677654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.24  E-value=6.1e-10  Score=106.30  Aligned_cols=111  Identities=13%  Similarity=0.041  Sum_probs=80.8

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015377          246 YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPL---VTLQSNILLTALLSGARMFSMGTFIIANIFAP  322 (408)
Q Consensus       246 ~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (408)
                      ........+...++.++.|.++||+|||+.++.+.++.++..+..   ....+........++..+......+....+.+
T Consensus        64 g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~  143 (438)
T 3o7q_A           64 GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVT  143 (438)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHH
Confidence            344445567778899999999999999999988877766655444   33333232222223333333344566788899


Q ss_pred             cccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHh
Q 015377          323 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLV  356 (408)
Q Consensus       323 el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~  356 (408)
                      |.+|.+.|+.+.|+.+....+|.+++|.+.+.+.
T Consensus       144 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998887766

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.24  E-value=3.5e-10  Score=109.87  Aligned_cols=141  Identities=11%  Similarity=0.017  Sum_probs=100.2

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccc
Q 015377          246 YINVFITSFAELPGLLTAALLVDR-VGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEI  324 (408)
Q Consensus       246 ~~~~~~~~~~~~~g~~~~~~l~dr-~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el  324 (408)
                      ........++..++.+++|+++|| +|||+.+..+.++..+.........+........+...+......+....+.+|.
T Consensus        57 ~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  136 (491)
T 4aps_A           57 ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTL  136 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            334445567788899999999999 8999999888777766655554444333332222333333334456778889999


Q ss_pred             cCCch--hhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccccc
Q 015377          325 YPTSM--RSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFET  386 (408)
Q Consensus       325 ~p~~~--R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et  386 (408)
                      +|.+.  |+++.++.+....+|..++|.+.+.+.+..++...+.+.++..+++.+...+..|+.
T Consensus       137 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  200 (491)
T 4aps_A          137 YDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT  200 (491)
T ss_dssp             SSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            99988  778888888999999999999988887766766777777766666666655554443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.11  E-value=5.8e-10  Score=104.30  Aligned_cols=143  Identities=17%  Similarity=0.052  Sum_probs=101.2

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhhhhcccccC
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYP  326 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~p  326 (408)
                      .......+...++.+..|+++||+|||+.+..+.....+........++............+......+....+.+|.+|
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~  118 (375)
T 2gfp_A           39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYE  118 (375)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCC
Confidence            34445567778899999999999999999888777666655444443333322222222233333345667788899999


Q ss_pred             CchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCc
Q 015377          327 TSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGK  389 (408)
Q Consensus       327 ~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~  389 (408)
                      .+.|+++.++.+....+|..++|.+.+.+.+..+....+.+.++..++..+...+..||++.+
T Consensus       119 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          119 RTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            999999999999999999999999888776655555667777777766666556667777654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.06  E-value=4.4e-09  Score=102.97  Aligned_cols=137  Identities=15%  Similarity=0.072  Sum_probs=93.8

Q ss_pred             HHHHHHhhhhHHHHHHHHHHhhh-chHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhhhhhccccc
Q 015377          248 NVFITSFAELPGLLTAALLVDRV-GRKLSMTIMFIFVCIFLLPLVTLQ-SNILLTALLSGARMFSMGTFIIANIFAPEIY  325 (408)
Q Consensus       248 ~~~~~~~~~~~g~~~~~~l~dr~-grR~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~  325 (408)
                      ...+..+...++.+++|+++||+ |||+.+..+.++..+..+...... +........+...+......+....+.+|.+
T Consensus        59 ~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  138 (524)
T 2xut_A           59 VFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQF  138 (524)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHc
Confidence            33444567778899999999999 999999887776666555444433 3332222222233333344567788899999


Q ss_pred             CCchhhHHHhH---HHHhhhHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhccc
Q 015377          326 PTSMRSTGAGV---AYAVGRIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPF  384 (408)
Q Consensus       326 p~~~R~~a~gi---~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  384 (408)
                      |++.|+++.+.   .+....+|+.++|.+.+.+.+..+....+.+.+++.+++.+...+..|
T Consensus       139 ~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~  200 (524)
T 2xut_A          139 DQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK  200 (524)
T ss_dssp             STTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999766665   888888999999988877776666666777777776666655554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.73  E-value=3.5e-07  Score=88.47  Aligned_cols=103  Identities=12%  Similarity=0.016  Sum_probs=71.0

Q ss_pred             HhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHh------------------hhhhHHHHHHHHHHHHHhhhhh
Q 015377          253 SFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVT------------------LQSNILLTALLSGARMFSMGTF  314 (408)
Q Consensus       253 ~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  314 (408)
                      .++.++|.++.|+++||+|||+.+..+.++..+..+...+                  ..+.......-+...+...+..
T Consensus        65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~  144 (491)
T 4gc0_A           65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLAS  144 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999999998877766554443321                  1111222222223333334455


Q ss_pred             hhhhhhcccccCCchhhHHHhHHHHhhhHhHhhHHHHHHHH
Q 015377          315 IIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGL  355 (408)
Q Consensus       315 ~~~~~~~~el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l  355 (408)
                      +....+.+|..|++.|+...++......+|..+++.+...+
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~  185 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI  185 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence            77888999999999999999998888777777776655433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.29  E-value=4.2e-07  Score=86.26  Aligned_cols=118  Identities=13%  Similarity=0.101  Sum_probs=90.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHH-HHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVV-FSTFWTFGSVS   78 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~~G~~l   78 (408)
                      |.|||+.+..+.++..+..++.++.++...+++..++.|++.+.. .....+..|..|++.||...++ ++....+|..+
T Consensus       285 r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~  364 (417)
T 2cfq_A          285 RIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF  364 (417)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH
Confidence            358999998888888777777778888888888888888775543 3345678999999999998888 57788899999


Q ss_pred             HHHHHhHhccccchHHHHHHhhHHHHHHHHH-HHhccCcch
Q 015377           79 EAALAWIVMPILTWRWLLALSAIPAFVLLIF-IVFMPESPR  118 (408)
Q Consensus        79 ~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~~-~~~lpESp~  118 (408)
                      +|.+...+.+..+|+..|.+.++..++..+. ....||.++
T Consensus       365 gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             hhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            9998887777778999998887776665443 444565443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	4e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 40/388 (10%), Positives = 99/388 (25%), Gaps = 48/388 (12%)

Query: 6   MSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGL-GSGHVFFSWFMEFVPPSNRGKW 64
             ++  A V    G +   + +   + +L  L G              + +     RG  
Sbjct: 94  AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGI 153

Query: 65  MVVFSTFWTFGSVSEAAL--AWIVMPILTWRWLLALSAIPAFVLLIFIVFMPESPRYLCT 122
           + V++     G      L    +         L   +     V L     M ++P+    
Sbjct: 154 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ---- 209

Query: 123 KGRITDAHNILDKIAQFNQTSLPSGNLTSDGTNDLDEEFSTSEETPLLSSARKRTTVRKS 182
                                          +  L        + P   + +    +   
Sbjct: 210 -------------------------------SCGLPPIEEYKNDYPDDYNEKAEQELTAK 238

Query: 183 GFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSSILLSENVQD 242
                 +L +   +   I    +Y     +         E+         S       + 
Sbjct: 239 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFA--LDKSSWAYFLYEY 296

Query: 243 ASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTAL 302
           A +   +     ++              G      +  + +   +  +    +  +    
Sbjct: 297 AGIPGTLLCGWMSDKVFRG-------NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMIC 349

Query: 303 LSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVC-PLVAVGLVTSCHQ 361
           +        G  ++  + A E+ P     T AG     G +GG V    +    V     
Sbjct: 350 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 409

Query: 362 TAAILLLEALIVLSVVVILLIPFETKGK 389
               +++    +L+V++++++    K +
Sbjct: 410 DGGFMVMIGGSILAVILLIVVMIGEKRR 437

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.82
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.22
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.69

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.9e-25  Score=212.53  Aligned_cols=338  Identities=15%  Similarity=0.190  Sum_probs=205.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSP----NYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVFSTFWTFG   75 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~~~~~~~G   75 (408)
                      |.|||+++.++.++..++.++.++++    ++..+++.|++.|++.|.. +....++.|++|+++||+.+++.+.+..+|
T Consensus        85 r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  164 (447)
T d1pw4a_          85 RSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  164 (447)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             HcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchh
Confidence            57999999999999999998888764    6788999999999998876 456678899999999999999999999999


Q ss_pred             HHHHHHHHhHhc-cccchHHHHHHhhHHHHHH-HHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCCC
Q 015377           76 SVSEAALAWIVM-PILTWRWLLALSAIPAFVL-LIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSDG  153 (408)
Q Consensus        76 ~~l~~~l~~~~~-~~~~Wr~~f~i~~i~~~~~-~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~  153 (408)
                      ..+++.+..... ...+||+.|++.+++.++. ++.+.+++|+|+........+                         .
T Consensus       165 ~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~  219 (447)
T d1pw4a_         165 GGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE-------------------------Y  219 (447)
T ss_dssp             HTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT-------------------------T
T ss_pred             hhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh-------------------------h
Confidence            999988776544 3568999999988776665 445667777776321100000                         0


Q ss_pred             CCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q 015377          154 TNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSSS  233 (408)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  233 (408)
                      +.+..++.++.++         ++...+  ....+..++.+   .........+......++...+.+....+.      
T Consensus       220 ~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  279 (447)
T d1pw4a_         220 KNDYPDDYNEKAE---------QELTAK--QIFMQYVLPNK---LLWYIAIANVFVYLLRYGILDWSPTYLKEV------  279 (447)
T ss_dssp             CCC----------------------CCT--HHHHHHTSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHBTTB------
T ss_pred             hhhcccchhhccc---------cccchh--hHHHHHHHcCc---hHHHHHHHhhhhhhhhhcchhhhhhhcccc------
Confidence            0000000000000         000000  00111122111   111222222333333444444444332211      


Q ss_pred             cccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHH---HHHHHh--hhhhHHHHHHHHHHHH
Q 015377          234 ILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIF---LLPLVT--LQSNILLTALLSGARM  308 (408)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~  308 (408)
                          ...+.........+..+..+++.++++++.||.+||...........+.   ......  ..+........+...+
T Consensus       280 ----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  355 (447)
T d1pw4a_         280 ----KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF  355 (447)
T ss_dssp             ----SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred             ----cccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence                0111222233444556778899999999999998875443322222221   111111  1222222222333333


Q ss_pred             HhhhhhhhhhhhcccccCCchhhHHHhHHHHhhhHh-HhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          309 FSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIG-GMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       309 ~~~~~~~~~~~~~~el~p~~~R~~a~gi~~~~~~~~-~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      ...+..+..+.+..|.+|++.|+++.|+.+.+++++ .+++|.+.+.+.+..+....+.+++++++++.++.+++.++.+
T Consensus       356 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (447)
T d1pw4a_         356 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  435 (447)
T ss_dssp             HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            334555677888999999999999999999999985 5667888888888777667777777777777666666654433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7.7e-19  Score=163.55  Aligned_cols=333  Identities=10%  Similarity=0.009  Sum_probs=188.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHH----HHHHHhhccCCcch-hhhHHHhhhcCC--CcchhHHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLL----ILRGLAGAGLGSGH-VFFSWFMEFVPP--SNRGKWMVVFSTFWT   73 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~R~l~Gi~~g~~~-~~~~~~~E~~p~--~~Rg~~~~~~~~~~~   73 (408)
                      |.|||+.++++.....++..+..+..+.....    +.+++.|.+.+... .......+..++  +++....+.......
T Consensus        69 r~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (417)
T d1pv7a_          69 KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGC  148 (417)
T ss_dssp             HHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhc
Confidence            46999999999999998888888877766544    44444444443322 222222222222  234445566667777


Q ss_pred             HHHHHHHHHHhHhccccchHHHHHHh-hHHHHHHHHHHHhccCcchhHhhcCChhhHHHHHHHHHHHcCCCCCCCCccCC
Q 015377           74 FGSVSEAALAWIVMPILTWRWLLALS-AIPAFVLLIFIVFMPESPRYLCTKGRITDAHNILDKIAQFNQTSLPSGNLTSD  152 (408)
Q Consensus        74 ~G~~l~~~l~~~~~~~~~Wr~~f~i~-~i~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~  152 (408)
                      .|..+++.++..+.+. +|++.+... ....+...+..+..||+|+...   +.++.+                      
T Consensus       149 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------------------  202 (417)
T d1pv7a_         149 VGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSAT---VANAVG----------------------  202 (417)
T ss_dssp             HHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSC---SSHHHH----------------------
T ss_pred             cccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchh---hhhhhh----------------------
Confidence            7777877777665543 455555544 4445555666677787765210   000000                      


Q ss_pred             CCCCcccccCCCCCccccccccccccccccccchhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 015377          153 GTNDLDEEFSTSEETPLLSSARKRTTVRKSGFSSFLMLFSPRFFKTTILLWVLYFGNSFVYYGIVLLASELSGSQSKCSS  232 (408)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  232 (408)
                               ++.+....      .        ........+..+......................+......       
T Consensus       203 ---------~~~~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  252 (417)
T d1pv7a_         203 ---------ANHSAFSL------K--------LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA-------  252 (417)
T ss_dssp             ---------SCCCCCCH------H--------HHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-------
T ss_pred             ---------hhcccccc------c--------ccccccccccccchhhhhHHHHHHHHhhhcccccccccccc-------
Confidence                     00000000      0        00001111122221111111111111111111111111100       


Q ss_pred             ccccccCccchhHHHHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhh
Q 015377          233 SILLSENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMG  312 (408)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (408)
                          .................+...++..+.+++.||.|||+.+..+..+..+....+....+............+....
T Consensus       253 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  328 (417)
T d1pv7a_         253 ----TGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPF  328 (417)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             ----ccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHH
Confidence                0001111222233444567778889999999999999999888777766665555544444333333333333334


Q ss_pred             hhhhhhhhcccccCCchhhHHHhHHHHhh-hHhHhhHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhcccccCCccc
Q 015377          313 TFIIANIFAPEIYPTSMRSTGAGVAYAVG-RIGGMVCPLVAVGLVTSCHQTAAILLLEALIVLSVVVILLIPFETKGKEL  391 (408)
Q Consensus       313 ~~~~~~~~~~el~p~~~R~~a~gi~~~~~-~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~et~~~~~  391 (408)
                      ..+....+.+|.+|++.|+++.|+.+++. .+|+.++|.+.+.+.+..+....+.++++++++..++.+++.++++..++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  408 (417)
T d1pv7a_         329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL  408 (417)
T ss_dssp             HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred             HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence            45677888899999999999999977654 58999999999988888777778888888888888888888777766655


Q ss_pred             cc
Q 015377          392 VN  393 (408)
Q Consensus       392 ~~  393 (408)
                      .+
T Consensus       409 ~r  410 (417)
T d1pv7a_         409 LR  410 (417)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=3.6e-10  Score=105.63  Aligned_cols=141  Identities=14%  Similarity=0.055  Sum_probs=96.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhhhhhhhhhhhcc
Q 015377          247 INVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTL----QSNILLTALLSGARMFSMGTFIIANIFAP  322 (408)
Q Consensus       247 ~~~~~~~~~~~~g~~~~~~l~dr~grR~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (408)
                      .......++..++.++.|.++||+|||+.+..+.++.++..+.....    .+........+...++.....+....+.+
T Consensus        63 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  142 (447)
T d1pw4a_          63 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV  142 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            33445567778899999999999999999988877766654443321    11122222222222333334566778889


Q ss_pred             cccCCchhhHHHhHHHHhhhHhHhhHHHHHHHHhhhc-chhhHHHHHHHHHHHHHHHHHhcccccC
Q 015377          323 EIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSC-HQTAAILLLEALIVLSVVVILLIPFETK  387 (408)
Q Consensus       323 el~p~~~R~~a~gi~~~~~~~~~~~~p~~~~~l~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~et~  387 (408)
                      |.+|.+.|+++.|+.+....+|+.++|.+...+.... ++...+.+.+.+.++..++.+++.+|++
T Consensus       143 ~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (447)
T d1pw4a_         143 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP  208 (447)
T ss_dssp             TTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             HHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccch
Confidence            9999999999999999999999999988776555443 3445667777777776677777666654

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=9.9e-09  Score=93.81  Aligned_cols=116  Identities=12%  Similarity=0.076  Sum_probs=96.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhccCCcc-hhhhHHHhhhcCCCcchhHHHHH-HHHHHHHHHH
Q 015377            1 MEEGRMSILGGALVTFVAGLLSAFSPNYISLLILRGLAGAGLGSG-HVFFSWFMEFVPPSNRGKWMVVF-STFWTFGSVS   78 (408)
Q Consensus         1 ~~gRr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~Gi~~g~~-~~~~~~~~E~~p~~~Rg~~~~~~-~~~~~~G~~l   78 (408)
                      |.|||+.+.++.++..++.++.++.++...+++.-++.|++.+.. +....++.|..|+++||+..+.. +....+|..+
T Consensus       285 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i  364 (417)
T d1pv7a_         285 RIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF  364 (417)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHH
T ss_pred             ccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHH
Confidence            358899999999999999999999999999999999999998875 45567889999999999999874 5677899999


Q ss_pred             HHHHHhHhccccchHHHHHHhhHHHHHHHH-HHHhccCc
Q 015377           79 EAALAWIVMPILTWRWLLALSAIPAFVLLI-FIVFMPES  116 (408)
Q Consensus        79 ~~~l~~~~~~~~~Wr~~f~i~~i~~~~~~~-~~~~lpES  116 (408)
                      ++.+...+.+..||+..|++.++..++..+ ..+.+++.
T Consensus       365 ~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         365 MSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999988888888999999988777665544 44444433