Citrus Sinensis ID: 015396

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
Protein Sequence
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSSGPGSKRSC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHcHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHccccHHHHHcccccccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccHcccccccccHHHHHHHHHHHcccccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
maageeklrepflknekryyencpgckvdqlkdtksglpitELFSIWIIVLCtalpisslfpfLYFMIKDFQIAKREedigsyagyvgssfmFGRALTSVFWGLvadrygrkpviiMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLiigpalggflaqpaekypnlfsseslfgkfpyflpclcISLFAFGVTIAafwlpetlhrhnddddscdvSYDALESASAevkeeegreatpkksllknwplmSSIIVYCVFSLHDMAYSEIFSLWanspkklgglnystQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVltiplltsypyIAMLSGFGLAFLLNCASVVKNLlsssgpgskrsc
Flexible Loop (DISEMBL)
maageeklrepflknekRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESAsaevkeeegreatpkksllknwplMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNllsssgpgskrsc
Low Complexity Region (SEG)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTawgigliigpalggflaQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNddddscdvsydALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSSGPGSKRSC
Disordered region (IsUnstruct)
****************KRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR***********************************LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNL************
Disordered Region (DISOPRED)
****************************************TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALE*************ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL****P******
Disordered Region (DISEMBL)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDAL******************KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLL***********
Disordered Region (DISPRO)
*********EPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN*DDDSCDVSYDALESASA*********ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSSG*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSSGPGSKRSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	407	2.2.26 [Sep-21-2011]
Q94BZ1	478	Protein ZINC INDUCED FACI	yes	no	0.938	0.799	0.685	1e-154
Q8RWN2	486	Protein ZINC INDUCED FACI	no	no	0.968	0.810	0.634	1e-142
Q3EAQ5	484	Probable peptide/nitrate	no	no	0.916	0.770	0.598	1e-130
P25351	611	Uncharacterized membrane	yes	no	0.535	0.356	0.324	1e-28
B4EYY4	402	Multidrug resistance prot	yes	no	0.432	0.437	0.281	5e-10
A8GCZ5	411	Multidrug resistance prot	no	no	0.432	0.428	0.275	2e-09
D8MQN9	411	Multidrug resistance prot	no	no	0.479	0.474	0.269	3e-09
P0A4K5	399	Multi-drug resistance eff	yes	no	0.356	0.363	0.298	2e-08
P0A4K4	399	Multi-drug resistance eff	yes	no	0.356	0.363	0.298	2e-08
P02980	401	Tetracycline resistance p	yes	no	0.447	0.453	0.248	5e-08

>sp|Q94BZ1|ZIFL1_ARATH Protein ZINC INDUCED FACILITATOR-LIKE 1 OS=Arabidopsis thaliana GN=ZIFL1 PE=2 SV=1

 Score =  544 bits (1402), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/385 (68%), Positives = 312/385 (81%), Gaps = 3/385 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSSSG 400
            LSG  L   +  ASV K++L +S 
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSA 392

Major facilitator superfamily (MFS) transporter probably involved in 2,4-dichlorophenoxyacetic acid (2,4-D) export.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWN2|ZIF1_ARATH Protein ZINC INDUCED FACILITATOR 1 OS=Arabidopsis thaliana GN=ZIF1 PE=1 SV=2

 Score =  504 bits (1297), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 253/399 (63%), Positives = 307/399 (76%), Gaps = 5/399 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ +E  L+ ++ Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct: 3   EEYKEALLE-KQNYHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct: 62  YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VSTAWGIGLII
Sbjct: 122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct: 182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query: 246 DDDSCDVSYDALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
           D  S D SYD LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct: 242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct: 302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSSG 400
            L IP+  SYP+IA LSG  L+ +LNCAS++ N+LS S 
Sbjct: 362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVSA 400

Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAQ5|PTR36_ARATH Probable peptide/nitrate transporter At3g43790 OS=Arabidopsis thaliana GN=ZIFL2 PE=2 SV=2

 Score =  463 bits (1192), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 230/384 (59%), Positives = 290/384 (75%), Gaps = 11/384 (2%)

Query: 21  ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
           E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct: 15  EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
           G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct: 75  GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query: 141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            RFLLG  N LLG I+AYA E+  EE+ AL LS VST+ GIGLI+GPA+GG+LAQPAEKY
Sbjct: 135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query: 201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA 260
           PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH        C ++   L   
Sbjct: 195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTR------CRIAQGRLNPT 248

Query: 261 SAEVKEEEG-----REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
                E  G     ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  
Sbjct: 249 ELNDDESRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSY 308

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL++S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA
Sbjct: 309 GGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIA 368

Query: 376 MLSGFGLAFLLNCASVVKNLLSSS 399
           +LSG  L  ++NCAS++KN LS S
Sbjct: 369 LLSGVTLHLVINCASIIKNALSIS 392

Arabidopsis thaliana (taxid: 3702)

>sp|P25351|YCR3_YEAST Uncharacterized membrane protein YCR023C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR023C PE=1 SV=2

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 120/225 (53%), Gaps = 7/225 (3%)

Query: 31  LKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSS 90
            K+   G P  +L  + ++     +  SSLFP++YFM++DF IA  +  +  Y+GY+ SS
Sbjct: 8   FKEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSS 67

Query: 91  FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNG 150
           F   + +++  WG  ++++GRK  +  G     +   + G S NF+ A++ R L+G LNG
Sbjct: 68  FALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNG 127

Query: 151 LLGPIKAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLA---QPAEKYPNLFS- 205
            +G I+    EI  E +HQAL  ST+   +  G ++GP +GGFL        + P  F  
Sbjct: 128 NVGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPH 187

Query: 206 -SESLFGKFPYFLPCLCISLF-AFGVTIAAFWLPETLHRHNDDDD 248
            ++ +   +PY LP + + +F  FG+T A  +L ET     D  D
Sbjct: 188 FAKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEETHPAFKDRRD 232

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|B4EYY4|MDTG_PROMH Multidrug resistance protein MdtG OS=Proteus mirabilis (strain HI4320) GN=mdtG PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            L+ +W     T    S + PFL   +++  I K  E +  + G   S +F+F  A+ + 
Sbjct: 13  NLYIVWFGCFLTGAGFSLIMPFLPLYVEELGI-KDHESLNLWTGVAFSITFLF-SAIAAP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG ++DR GRK +++     + I   L G + N W  ++ R LLG L G +    A   
Sbjct: 71  FWGKLSDRKGRKLMLLRSALGMAIVMVLIGFAQNIWQLLILRALLGVLGGFVPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                +     L T+ST    G +IGP +GG LA      P  F + ++         C 
Sbjct: 131 TQVPVKKSGWALGTLSTGAVSGALIGPLIGGILADLYGLRPVFFITAAV------LFICF 184

Query: 221 CISLF 225
            ++LF
Sbjct: 185 IVTLF 189

Proteus mirabilis (strain HI4320) (taxid: 529507)

>sp|A8GCZ5|MDTG_SERP5 Multidrug resistance protein MdtG OS=Serratia proteamaculans (strain 568) GN=mdtG PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 9/185 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W+    T    S + PFL   ++   +    + +  ++G V S +F+F  A+ S 
Sbjct: 13  NLFVAWLGCFLTGAAFSLIMPFLPLYVETLGVTG-HQALNMWSGLVFSITFLFS-AIASP 70

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + I   L G++ N W  +  R +LG L G +    A   
Sbjct: 71  FWGGLADRRGRKLMLLRSALGMSIVMLLMGMAQNIWQFLALRAVLGLLGGFIPNANALIA 130

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                      L T+ST    G +IGP +GG LA      P  + +  +       L C 
Sbjct: 131 TQVPRNRSGWALGTLSTGGVSGALIGPLIGGLLADQYGLRPVFYITAGV------LLTCF 184

Query: 221 CISLF 225
            ++L 
Sbjct: 185 VLTLL 189

Serratia proteamaculans (strain 568) (taxid: 399741)

>sp|D8MQN9|MDTG_ERWBE Multidrug resistance protein MdtG OS=Erwinia billingiae (strain Eb661) GN=mdtG PE=3 SV=1

 Score = 63.5 bits (153), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 85/204 (41%), Gaps = 9/204 (4%)

Query: 42  ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSV 100
            LF  W     T +  S + PFL   ++   +      +  ++G V S +F+F  A+ S 
Sbjct: 16  NLFVAWCGCFLTGIAFSLVMPFLPLYVELLGVTD-PHSLNMWSGLVFSITFLFS-AIASP 73

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYAC 160
           FWG +ADR GRK +++     + +   L GL+ + W  +  R +LG L G +    A   
Sbjct: 74  FWGGLADRKGRKIMLLRSALGMSVVMVLMGLATSIWQFLALRAVLGLLGGFVPNANALIA 133

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
                      L  +ST    G +IGP +GG LA      P  F + S+         C 
Sbjct: 134 TQVPRNKSGWALGWLSTGAVSGALIGPLIGGLLADSFGLRPVFFITASV------LFVCF 187

Query: 221 CISLFAFGVTIAAFWLPETLHRHN 244
            ++LFA           + LH H 
Sbjct: 188 IMTLFAVREEFVPVQKKDMLHAHQ 211

Erwinia billingiae (strain Eb661) (taxid: 634500)

>sp|P0A4K5|PMRA_STRR6 Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pmrA PE=3 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (strain ATCC BAA-255 / R6) (taxid: 171101)

>sp|P0A4K4|PMRA_STRPN Multi-drug resistance efflux pump PmrA OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=pmrA PE=3 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA 106
           W     T   IS + PF+   +++  +  ++  +  YAG   S      AL S  WG++A
Sbjct: 14  WFGNFLTGASISLVVPFMPIFVENLGVGSQQ--VAFYAGLAISVSAISAALFSPIWGILA 71

Query: 107 DRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPIKAYACEIFR 164
           D+YGRKP++I    ++ I  T+ GL+   N +  +  R L G   G +    A       
Sbjct: 72  DKYGRKPMMIRAGLAMTI--TMGGLAFVPNIYWLIFLRLLNGVFAGFVPNATALIASQVP 129

Query: 165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           +E     L T+ST    G + GP +GGF+A+
Sbjct: 130 KEKSGSALGTLSTGVVAGTLTGPFIGGFIAE 160

Efflux pump for various substrates.

Streptococcus pneumoniae (taxid: 1313)

>sp|P02980|TCR2_ECOLX Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 59.3 bits (142), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 27/209 (12%)

Query: 48  IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD 107
           +I L  A+ I  + P L  ++++F      EDI ++ G + + +   + + + + G ++D
Sbjct: 10  VITLLDAMGIGLIMPVLPTLLREF---IASEDIANHFGVLLALYALMQVIFAPWLGKMSD 66

Query: 108 RYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEH 167
           R+GR+PV+++      +   L   S   WM  L R     L+G+ G   A A  +  +  
Sbjct: 67  RFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRL----LSGITGATGAVAASVIADTT 122

Query: 168 QALG----LSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
            A         +  ++G+GLI GP +GGF     E  P+           P+F+  L ++
Sbjct: 123 SASQRVKWFGWLGASFGLGLIAGPIIGGF---AGEISPH----------SPFFIAAL-LN 168

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDV 252
           +  F V +  FW  ET +  ++ D    V
Sbjct: 169 IVTFLVVM--FWFRETKNTRDNTDTEVGV 195

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
224097490	495	predicted protein [Populus trichocarpa]	0.965	0.793	0.755	1e-169
359487104	1624	PREDICTED: uncharacterized protein LOC10	0.965	0.241	0.705	1e-166
296085436	518	unnamed protein product [Vitis vinifera]	0.965	0.758	0.705	1e-165
225465403	487	PREDICTED: protein ZINC INDUCED FACILITA	0.963	0.804	0.722	1e-163
225465405	487	PREDICTED: protein ZINC INDUCED FACILITA	0.965	0.806	0.736	1e-161
297807399	479	hypothetical protein ARALYDRAFT_488196 [	0.936	0.795	0.695	1e-157
30684565	478	zinc induced facilitator-like 1 protein	0.938	0.799	0.685	1e-152
79327804	411	zinc induced facilitator-like 1 protein	0.938	0.929	0.685	1e-152
227202678	392	AT5G13750 [Arabidopsis thaliana]	0.936	0.971	0.687	1e-151
359481459	490	PREDICTED: protein ZINC INDUCED FACILITA	0.965	0.802	0.670	1e-149

>gi|224097490|ref|XP_002310957.1| predicted protein [Populus trichocarpa] gi|222850777|gb|EEE88324.1| predicted protein [Populus trichocarpa]

 Score =  599 bits (1544), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 302/400 (75%), Positives = 346/400 (86%), Gaps = 7/400 (1%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ RE  LK +  YYENCPGCKVDQLK+ K G P  +L SIWI+VLCTALPIS+LFPFLY
Sbjct: 3   EEYREALLKKDD-YYENCPGCKVDQLKELKKGFPFRDLISIWIVVLCTALPISTLFPFLY 61

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IA+REEDIG YAGYVGSSFM GRALTSVFWG+VADRYGRKPVI++GT +VVIF
Sbjct: 62  FMIRDFGIAEREEDIGYYAGYVGSSFMIGRALTSVFWGIVADRYGRKPVILLGTIAVVIF 121

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA++TRFLLGSLNGLLGPIKAYA EIFR E+QALGLSTVSTAWG+GLII
Sbjct: 122 NTLFGLSVNFWMAIITRFLLGSLNGLLGPIKAYAVEIFRAEYQALGLSTVSTAWGLGLII 181

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYPNLFS ESLFG+FPYFLPC CISLFA  VTI + WLPETLH HN+
Sbjct: 182 GPALGGFLAQPAEKYPNLFSKESLFGRFPYFLPCFCISLFALVVTIVSCWLPETLHVHNE 241

Query: 246 DDDSCDVSYDALESASAEVK------EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
              S + SYDALE+A+   K      +++GR+ +  +SLLKNWPLMSSIIVYC+FSLHDM
Sbjct: 242 KKTSSNDSYDALEAATGASKGDETRTDDKGRKPSSNESLLKNWPLMSSIIVYCIFSLHDM 301

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AY+EIFSLWA S +KLGGL Y+T+ VGEVLAI+GFSLLVFQLSLYPF+ERILGPI VA+I
Sbjct: 302 AYTEIFSLWAESSRKLGGLGYTTEDVGEVLAISGFSLLVFQLSLYPFVERILGPIPVAQI 361

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSS 399
           A  L+I LL+SYP+IAMLSG GL+ L+NCAS++KN+ S S
Sbjct: 362 AAALSILLLSSYPFIAMLSGLGLSILINCASIMKNVFSVS 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487104|ref|XP_002274088.2| PREDICTED: uncharacterized protein LOC100259102 [Vitis vinifera]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 282/400 (70%), Positives = 338/400 (84%), Gaps = 7/400 (1%)

Query: 5    EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
            EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 1140 EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 1197

Query: 65   YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
            YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 1198 YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 1257

Query: 125  FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 1258 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 1317

Query: 185  IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 1318 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 1377

Query: 245  DDDDSCDVSYDALE-----SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
            +++     SY+ALE     +A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 1378 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 1437

Query: 300  AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
            AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 1438 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 1497

Query: 360  AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSS 399
            AGVL+IPLL  YP IAMLSGF L+  LNCAS +KN+LS S
Sbjct: 1498 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVS 1537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085436|emb|CBI29168.3| unnamed protein product [Vitis vinifera]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 282/400 (70%), Positives = 338/400 (84%), Gaps = 7/400 (1%)

Query: 5   EEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFL 64
           EE+ RE  LK  K Y+E CPGC+V+ LKDT+ GLP+ +LF +WI+VLC ALPISSLFP+L
Sbjct: 34  EEEQREVLLK--KVYHEGCPGCRVEHLKDTQRGLPVRQLFFVWIVVLCNALPISSLFPYL 91

Query: 65  YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI 124
           YFMI+DF IAK E+DIG YAGY G+S+MFGRALTS+ WG+VADRYGRKPVI++GTASVVI
Sbjct: 92  YFMIRDFNIAKTEKDIGYYAGYAGASYMFGRALTSILWGMVADRYGRKPVILVGTASVVI 151

Query: 125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
           FNTLFGLS+N+WMA+ +RFLLGS++ LLGPI AYA EIFREE+QALGLST++TAWG+GLI
Sbjct: 152 FNTLFGLSLNYWMAISSRFLLGSMSTLLGPIMAYATEIFREEYQALGLSTINTAWGVGLI 211

Query: 185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
           IGPALGGFLAQPAEKYPN+FS ES+FG+FPYFLPCLC S++AFG+TIA  WL ETLH HN
Sbjct: 212 IGPALGGFLAQPAEKYPNIFSKESIFGRFPYFLPCLCTSVYAFGITIACCWLQETLHTHN 271

Query: 245 DDDDSCDVSYDALES-----ASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +++     SY+ALE+     A   V E E  + T K+SL+KNWPLMSSIIV+CVFSLHDM
Sbjct: 272 ENNKLSKNSYNALEAPCGFNAEEAVNEIEANKPTSKESLIKNWPLMSSIIVFCVFSLHDM 331

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AYSEIFSLWA SP+K GGL+YST  VG VLAI+GF +LVFQL LYP+LE++LGPI++ RI
Sbjct: 332 AYSEIFSLWAVSPRKYGGLSYSTDDVGVVLAISGFGVLVFQLFLYPYLEKLLGPIIICRI 391

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSS 399
           AGVL+IPLL  YP IAMLSGF L+  LNCAS +KN+LS S
Sbjct: 392 AGVLSIPLLAIYPLIAMLSGFNLSLALNCASAMKNVLSVS 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465403|ref|XP_002277598.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085440|emb|CBI29172.3| unnamed protein product [Vitis vinifera]

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 289/400 (72%), Positives = 337/400 (84%), Gaps = 8/400 (2%)

Query: 6   EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           E+ + P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFPFLY
Sbjct: 3   EEQQVPLLK--KVYYQNCSGCRVEQLKETRRGLPIRELVSIWSVVLCTALPISSLFPFLY 60

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +VVIF
Sbjct: 61  FMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTITVVIF 120

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLSVNFWMA+ TRFLLGSLNG+LGPIKAYA EIFR+E+QALGLSTVSTA GIGLII
Sbjct: 121 NTLFGLSVNFWMALSTRFLLGSLNGVLGPIKAYAAEIFRDEYQALGLSTVSTARGIGLII 180

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  +T+A  WLPETLH HN+
Sbjct: 181 GPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIITVACCWLPETLHTHNE 240

Query: 246 DDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSLHDM 299
           +  S + SYDALE A    +A+ KE+  EG E T  +SL  NWPLMSSII+YCVFSLHD+
Sbjct: 241 NKKSREDSYDALEGANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIIYCVFSLHDI 300

Query: 300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI 359
           AY EIFSLWA SP+  GGL+YST  VG VLAI+GF L V Q++LYP +ER LGP+M+ RI
Sbjct: 301 AYIEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLFVSQVTLYPLVERFLGPVMICRI 360

Query: 360 AGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSS 399
           AGVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LS S
Sbjct: 361 AGVLSIPLLASYPLIAMLSGSTLSVVLNCASVLKNVLSVS 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465405|ref|XP_002277751.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1 [Vitis vinifera] gi|296085442|emb|CBI29174.3| unnamed protein product [Vitis vinifera]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 297/403 (73%), Positives = 343/403 (85%), Gaps = 10/403 (2%)

Query: 3   AGEEKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFP 62
           A E+++  P LK  K YY+NC GC+V+QLK+T+ GLPI EL SIW +VLCTALPISSLFP
Sbjct: 2   AAEQQV--PLLK--KVYYQNCSGCRVEQLKETRRGLPIRELLSIWTVVLCTALPISSLFP 57

Query: 63  FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV 122
           FLYFMI+DF IAKREEDIG YAGYVGS+FM GRALTSV WG+VADRYGRKPVI++GT +V
Sbjct: 58  FLYFMIRDFHIAKREEDIGYYAGYVGSAFMLGRALTSVAWGMVADRYGRKPVIMIGTIAV 117

Query: 123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG 182
           VIFNTLFGLSVNFWMA+ TRFLLGSLNGLLGPIKAYA EIFR+E+QALGLSTVSTAWGIG
Sbjct: 118 VIFNTLFGLSVNFWMALSTRFLLGSLNGLLGPIKAYAAEIFRDEYQALGLSTVSTAWGIG 177

Query: 183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR 242
           LIIGPALGGFLAQPAEKYP++FS +SLFG+FPYFLPCL IS++A  VT+A  WLPETLH 
Sbjct: 178 LIIGPALGGFLAQPAEKYPDIFSEDSLFGRFPYFLPCLFISVYAMIVTVACCWLPETLHT 237

Query: 243 HNDDDDSCDVSYDALESA----SAEVKEE--EGREATPKKSLLKNWPLMSSIIVYCVFSL 296
           HN++  S + SYDALE+A    +A+ KE+  EG E T  +SL  NWPLMSSIIVYCVFSL
Sbjct: 238 HNENKKSREDSYDALEAANGGSNAKEKEQEIEGSEPTSNESLFMNWPLMSSIIVYCVFSL 297

Query: 297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV 356
           HDMAY+EIFSLWA SP+  GGL+YST  VG VLAI+GF LLV QL+LYP +ER LGP+M+
Sbjct: 298 HDMAYTEIFSLWAVSPRIHGGLSYSTDDVGVVLAISGFGLLVSQLTLYPLVERFLGPVMI 357

Query: 357 ARIAGVLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSS 399
            RIAGVL+IPLL SYP IAMLSG  L+ +LNCASV+KN+LS S
Sbjct: 358 CRIAGVLSIPLLASYPLIAMLSGSSLSVVLNCASVLKNVLSVS 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807399|ref|XP_002871583.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata] gi|297317420|gb|EFH47842.1| hypothetical protein ARALYDRAFT_488196 [Arabidopsis lyrata subsp. lyrata]

 Score =  560 bits (1443), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 269/387 (69%), Positives = 318/387 (82%), Gaps = 6/387 (1%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           E +++E+CPGCKVDQ+K  + G P+ ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  ENKFHEDCPGCKVDQMKRLRRGFPLWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVIWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN--DDDDSCDVS 253
           PA +YP+LFS +S+FGKFP+FLPC  IS+FAF VTI + W+PETLH H   DDDD    S
Sbjct: 191 PATQYPSLFSQDSIFGKFPFFLPCFAISVFAFLVTIISLWIPETLHNHKYVDDDD----S 246

Query: 254 YDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK 313
           +DAL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+
Sbjct: 247 FDALKYLSHDPESNKVVERNEKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPR 306

Query: 314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY 373
           K GGL YST  VG VLAI+GF LL+FQLSLY + ER+LGPI+V RI+G+L + +L+ YP 
Sbjct: 307 KYGGLGYSTADVGSVLAISGFGLLIFQLSLYSYAERLLGPIIVTRISGILAMVILSCYPL 366

Query: 374 IAMLSGFGLAFLLNCASVVKNLLSSSG 400
           IA LSG  L   +N ASV KN+LS+S 
Sbjct: 367 IAKLSGLALTLAVNSASVAKNVLSTSA 393

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684565|ref|NP_851036.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|75249957|sp|Q94BZ1.1|ZIFL1_ARATH RecName: Full=Protein ZINC INDUCED FACILITATOR-LIKE 1; AltName: Full=Protein ZIF-LIKE 1 gi|14517414|gb|AAK62597.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|17065582|gb|AAL32945.1| transporter-like protein [Arabidopsis thaliana] gi|20857393|gb|AAM26717.1| AT5g13750/MXE10_2 [Arabidopsis thaliana] gi|332004552|gb|AED91935.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/385 (68%), Positives = 312/385 (81%), Gaps = 3/385 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSSSG 400
            LSG  L   +  ASV K++L +S 
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSA 392

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79327804|ref|NP_001031877.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana] gi|332004554|gb|AED91937.1| zinc induced facilitator-like 1 protein [Arabidopsis thaliana]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 264/385 (68%), Positives = 312/385 (81%), Gaps = 3/385 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSSSG 400
            LSG  L   +  ASV K++L +S 
Sbjct: 368 KLSGLALTVTVTSASVAKSVLGTSA 392

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227202678|dbj|BAH56812.1| AT5G13750 [Arabidopsis thaliana]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/384 (68%), Positives = 311/384 (80%), Gaps = 3/384 (0%)

Query: 16  EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
           EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct: 11  EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query: 76  REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
           +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct: 71  KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query: 136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VSTAWGIGLIIGPA+GGFLAQ
Sbjct: 131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query: 196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYD 255
           PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H  +DD    SYD
Sbjct: 191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDE---SYD 247

Query: 256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
           AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct: 248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query: 316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
           GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct: 308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query: 376 MLSGFGLAFLLNCASVVKNLLSSS 399
            LSG  L   +  ASV K++L  S
Sbjct: 368 KLSGLALTVTVISASVAKSVLGVS 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481459|ref|XP_003632620.1| PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Vitis vinifera] gi|297741718|emb|CBI32850.3| unnamed protein product [Vitis vinifera]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 267/398 (67%), Positives = 323/398 (81%), Gaps = 5/398 (1%)

Query: 7   KLREPFLKNEK-RYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
           K RE  LK E   Y E+CPGCK+D LK++  G+P   LF +WI+VLC ALPISSLFPFLY
Sbjct: 3   KNREALLKKEVWEYDESCPGCKIDHLKESNPGIPFKLLFYVWIVVLCAALPISSLFPFLY 62

Query: 66  FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
           FMI+DF IAKREEDIG YAGYVGSSFMFGRALTSV WG+VADRYGRKPVI  G  +++IF
Sbjct: 63  FMIRDFHIAKREEDIGFYAGYVGSSFMFGRALTSVIWGMVADRYGRKPVITAGLIALIIF 122

Query: 126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLII 185
           NTLFGLS N WMA+ TRFLLGS  G+LGP++AYA E+ R+E+QALG+S +STAWGIGL+I
Sbjct: 123 NTLFGLSTNVWMALSTRFLLGSFCGILGPMRAYASEVCRKEYQALGMSIISTAWGIGLVI 182

Query: 186 GPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
           GPALGGFLAQPAEK+P++FS ESLFG+FPYFLPCL IS FA GV++  +WLPETLH H +
Sbjct: 183 GPALGGFLAQPAEKFPHIFSKESLFGRFPYFLPCLLISTFALGVSVLCYWLPETLHIHKE 242

Query: 246 DDDSCDVSYDALESASAEVKEE----EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
           + +  ++    + +   +VKE+    EG+    ++SLLKNWPLMSSIIVYCVF LHDMAY
Sbjct: 243 NKEQDELYAWEVAAYGCDVKEKLKKFEGKGPNQQQSLLKNWPLMSSIIVYCVFQLHDMAY 302

Query: 302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
           +EIFSLWA SP + GGL+YST  VGEVLA++G  LL+FQL LYP LERILGP+MV+RI  
Sbjct: 303 AEIFSLWAISPSEYGGLSYSTADVGEVLAMSGLGLLLFQLFLYPPLERILGPVMVSRIGA 362

Query: 362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSS 399
           VLT+PLL+SYP IAMLSG GL+ L+NCAS++KN+L  S
Sbjct: 363 VLTVPLLSSYPLIAMLSGVGLSLLINCASLLKNVLCVS 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	407
TAIR|locus:2177105	478	ZIFL1 "zinc induced facilitato	0.936	0.797	0.632	1.6e-127
TAIR|locus:2173254	486	ZIF1 "zinc induced facilitator	0.965	0.808	0.577	1.5e-120
TAIR|locus:2101109	484	ZIFL2 "AT3G43790" [Arabidopsis	0.928	0.780	0.569	3.3e-111
ASPGD|ASPL0000053890	591	AN0890 [Emericella nidulans (t	0.501	0.345	0.344	1.7e-40
DICTYBASE|DDB_G0269964	665	DDB_G0269964 "Uncharacterized	0.513	0.314	0.309	1.1e-32
CGD|CAL0002781	633	orf19.4550 [Candida albicans (	0.353	0.227	0.379	1.3e-32
DICTYBASE|DDB_G0282945	669	DDB_G0282945 [Dictyostelium di	0.518	0.315	0.297	1.9e-32
CGD|CAL0004954	546	orf19.3432 [Candida albicans (	0.353	0.263	0.386	5.5e-32
ASPGD|ASPL0000051539	480	AN1423 [Emericella nidulans (t	0.380	0.322	0.354	5.9e-27
SGD|S000000617	611	YCR023C "Vacuolar membrane pro	0.511	0.340	0.297	3.2e-26

TAIR|locus:2177105 ZIFL1 "zinc induced facilitator-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
 Identities = 243/384 (63%), Positives = 289/384 (75%)

Query:    16 EKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK 75
             EK ++E+C GCKVDQ+K  + G P  ELF++WIIVLCTALPISSLFPFLYFMI DF IAK
Sbjct:    11 EKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIAK 70

Query:    76 REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF 135
             +EEDIG YAG+VG SFM GRA TSV WGLVADRYGRKPVI++GTASVV+FNTLFGLS+NF
Sbjct:    71 KEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLNF 130

Query:   136 WMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQ 195
             WMA++TRF LGS NGLLGPIKAYA EIFR+E+Q L LS VST                 Q
Sbjct:   131 WMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLAQ 190

Query:   196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXX 255
             PA++YP+LFS +S+FGKFP+FLPCL IS+FAF VTI +  +PETLH H            
Sbjct:   191 PAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHKFNDDESYD--- 247

Query:   256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKL 315
             AL+  S + +  +  E   K SLL NWPL+SSIIVYCVFSLHDMAY+EIFSLWANSP+K 
Sbjct:   248 ALKDLSDDPESNKVAERNGKSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANSPRKY 307

Query:   316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA 375
             GGL YST  VG VLA +GF LL+FQLSLY + ER+LGPI+V RI+G L + +L+ YP IA
Sbjct:   308 GGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCYPLIA 367

Query:   376 MLSGFGLAFLLNCASVVKNLLSSS 399
              LSG  L   +  ASV K++L +S
Sbjct:   368 KLSGLALTVTVTSASVAKSVLGTS 391

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2173254 ZIF1 "zinc induced facilitator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1186 (422.6 bits), Expect = 1.5e-120, P = 1.5e-120
 Identities = 230/398 (57%), Positives = 283/398 (71%)

Query:     6 EKLREPFLKNEKRYYENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLY 65
             E+ +E  L+ +  Y++ CPGCKV+Q+K  + G P  EL  +WIIVL T+LPISSL+PFLY
Sbjct:     3 EEYKEALLEKQN-YHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLY 61

Query:    66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF 125
             +MI+DF +AK E+DIG YAG+VG SFM GRALTSVFWG+VADRYGRKP+I++GT S+ IF
Sbjct:    62 YMIEDFGVAKTEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIF 121

Query:   126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXX 185
             N LFGLS NFWMA+ TRFLLGS N LLG +KAYA EIFR+E+QA  +S VST        
Sbjct:   122 NALFGLSSNFWMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLII 181

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNX 245
                      QPA+KYPN+FS ESLFG+F Y LPC  IS FA  VT+   ++PETLH H  
Sbjct:   182 GPALGGFLAQPADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKL 241

Query:   246 XXXXXXXXXXALESASAEVKEEEGR----EATPKKSLLKNWPLMSSIIVYCVFSLHDMAY 301
                        LE+AS E     G+    E    +SLLKNWPLMSSIIVYCV  LHD AY
Sbjct:   242 DSLSHDDSYDILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAY 301

Query:   302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG 361
             SEIF+LWANSP+K GGL+YST  VG VLAI+G  L  FQ+ +YP  E++LGP++V R AG
Sbjct:   302 SEIFALWANSPRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAG 361

Query:   362 VLTIPLLTSYPYIAMLSGFGLAFLLNCASVVKNLLSSS 399
              L IP+  SYP+IA LSG  L+ +LNCAS++ N+LS S
Sbjct:   362 ALMIPIQMSYPFIAGLSGLSLSLMLNCASILINVLSVS 399

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0055069 "zinc ion homeostasis" evidence=IMP

TAIR|locus:2101109 ZIFL2 "AT3G43790" [Arabidopsis thaliana (taxid:3702)]

 Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
 Identities = 216/379 (56%), Positives = 272/379 (71%)

Query:    21 ENCPGCKVDQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDI 80
             E+CPGC +D+ K  + G+P   L  IW++ LCTALPISSLFP++YFMI+DF IAK+EEDI
Sbjct:    15 EDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQEEDI 74

Query:    81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL 140
             G YAG+VGSSFM GRALTS+FWG +ADRYGRKP+I++GT SV+IFNTLFGLS +FW+A+ 
Sbjct:    75 GFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWLAIS 134

Query:   141 TRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKY 200
              RFLLG  N LLG I+AYA E+  EE+ AL LS VST                 QPAEKY
Sbjct:   135 VRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPAEKY 194

Query:   201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNXXXXXXXXXXXALESA 260
             PN+FS  S+FG+FPYFLP L IS++A  V IA +WLPETLH                +  
Sbjct:   195 PNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGRLNPTELNDDE 254

Query:   261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY 320
             S     +E ++   K SLL+N PLM+ IIVYCVFSL ++AY+EIFSLWA S +  GGL++
Sbjct:   255 SRGGGLDE-QKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLWAVSDRSYGGLSF 313

Query:   321 STQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGF 380
             S+Q VGEVLAI+G  LLVFQL +YP LE+ +G + V R++ VL IPLL+ YPYIA+LSG 
Sbjct:   314 SSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLLSCYPYIALLSGV 373

Query:   381 GLAFLLNCASVVKNLLSSS 399
              L  ++NCAS++KN LS S
Sbjct:   374 TLHLVINCASIIKNALSIS 392

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

ASPGD|ASPL0000053890 AN0890 [Emericella nidulans (taxid:162425)]

 Score = 342 (125.4 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
 Identities = 71/206 (34%), Positives = 106/206 (51%)

Query:    36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGR 95
             S  PI +LF + +  +C  +   S+FP++Y M++ F +   +  I  YAG + SSF F  
Sbjct:    21 SAFPIRQLFVLALCRICEPIAFMSIFPYVYHMVESFHVTSNDRKIALYAGLITSSFTFAE 80

Query:    96 ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI 155
                 +FWG ++D+ GRKPV+IMG     I   +FG + N   A++ R L G LNG +G +
Sbjct:    81 FSAGMFWGRMSDKIGRKPVLIMGLVGTAISMVVFGFAPNLATAMIARALGGLLNGNIGVL 140

Query:   156 KAYACEIFR-EEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFGKFP 214
             +    EI   +EHQ    S +                   QP + YP LFS ES+F KFP
Sbjct:   141 QTTVAEIVTVKEHQPRAYSIMPFVWCLGSIIGPAMGGALSQPCDNYPWLFSGESIFKKFP 200

Query:   215 YFLPCL-CISLFAFGVTIAAFWLPET 239
             + LP L C+ +   G+ +   +L ET
Sbjct:   201 FLLPNLVCVVVLMTGIVVGLLFLEET 226

GO:0003674 "molecular_function" evidence=ND

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

DICTYBASE|DDB_G0269964 DDB_G0269964 "Uncharacterized membrane protein YCR023C" [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
 Identities = 65/210 (30%), Positives = 102/210 (48%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K+  + +P  +L   ++++LC A+  SS F ++   I    +  + E +G YAG++ SSF
Sbjct:     8 KNHVTPMPWKKLIGAYVLLLCEAISTSSFFTYISPFIIFLGVTDKAELVGYYAGFIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L+S FWG +ADR GRKP++I G+   VI     G S +  M +L+R + G LNG 
Sbjct:    68 SAAQFLSSFFWGKMADRLGRKPILIFGSVGSVISLLCIGTSKSLVMLILSRSINGLLNGN 127

Query:   152 LGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSESLFG 211
             +G +K Y  E   + +Q      V                    P +   ++F    LF 
Sbjct:   128 IGVVKTYIGECTDKTNQVEAFGWVGLTWGLGSILGPSIGGLLADPVKNMSSIFKGSKLFE 187

Query:   212 KFPYFLPCLCIS-LFAFGVTIAAFWLPETL 240
              FP+FLP L I+ L   G      ++ ETL
Sbjct:   188 LFPFFLPNLVIAFLTIIGCVFTQLYMKETL 217

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

CGD|CAL0002781 orf19.4550 [Candida albicans (taxid:5476)]

 Score = 291 (107.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
 Identities = 55/145 (37%), Positives = 85/145 (58%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             ++   G P+ ++F I  I     +  +SLFP++YFMI+DF IA    DI  Y+GY+ +SF
Sbjct:    11 REQMKGFPLWQMFVISCIRFSEPIAFTSLFPYVYFMIRDFNIAPHSTDIAKYSGYLSASF 70

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
              F +    V WG  +D+YGRK +++MG     +   +FG S NFW+AV  R L+G LNG 
Sbjct:    71 AFCQFFCCVQWGKASDKYGRKKILLMGLLGTAVSMIIFGFSPNFWVAVFARSLMGCLNGN 130

Query:   152 LGPIKAYACEIF-REEHQALGLSTV 175
             +  ++    EI   + HQ++  ST+
Sbjct:   131 IAVLRTAIGEIATHKNHQSIAFSTL 155

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

DICTYBASE|DDB_G0282945 DDB_G0282945 [Dictyostelium discoideum (taxid:44689)]

 Score = 282 (104.3 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
 Identities = 63/212 (29%), Positives = 109/212 (51%)

Query:    29 DQLKDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVG 88
             +QL DT + LP+ ++ +I+II+LC A+   S+FP++ F++  F +   +  +G + G + 
Sbjct:    65 NQLDDTITPLPMMKILAIFIIMLCDAINSLSIFPYVNFLVSSFNLTTDKNKLGYFVGILA 124

Query:    89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
             SS+   + ++S FWG  ++  GR+P +++G    +I  T  G S N+ M V+ RFL G L
Sbjct:   125 SSYYIAQLVSSFFWGWFSNYRGRRPSLLLGLIGSMICLTGVGFSRNYPMVVVFRFLSGLL 184

Query:   149 NGLLGPIKAYACEIFREEHQALGLSTVSTXXXXXXXXXXXXXXXXXQPAEKYPNLFSSES 208
             NG +   K    EI    +QA   S +                      +K+P L    +
Sbjct:   185 NGNVSIAKTMLGEITDSSNQAKAFSFIGLSWGVGGIIAPLIGGFFSNFCKKHPELLGDGN 244

Query:   209 LFGKFPYFLPCLCISLFAF-GVTIAAFWLPET 239
             +F +FPY LP +   LF+  G+ +   +L E+
Sbjct:   245 IFCRFPYLLPNIICVLFSLTGLVLGYVYLQES 276

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

CGD|CAL0004954 orf19.3432 [Candida albicans (taxid:5476)]

 Score = 275 (101.9 bits), Expect = 5.5e-32, Sum P(3) = 5.5e-32
 Identities = 56/145 (38%), Positives = 89/145 (61%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K++ +  PI ++  I II     L  +S+FP++YFMI+DF IA +EEDI  Y+GY+ SSF
Sbjct:     8 KESLNDFPIRQMIIICIIRFAEPLAFTSIFPYIYFMIRDFHIAIKEEDISQYSGYIASSF 67

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + L ++ WG ++++ GRK ++I+G     I   LFG + N++ A++ R L G LNG 
Sbjct:    68 AICQFLFAIHWGTMSEKLGRKLILIIGLLGTSISLLLFGFARNYYWALIARCLAGVLNGN 127

Query:   152 LGPIKAYACEIFREE-HQALGLSTV 175
             +  ++    EI  E+ HQ L  ST+
Sbjct:   128 VAVLRTMIGEIAVEKRHQPLAFSTM 152

GO:0015238 "drug transmembrane transporter activity" evidence=ISS

GO:0015893 "drug transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

ASPGD|ASPL0000051539 AN1423 [Emericella nidulans (taxid:162425)]

 Score = 259 (96.2 bits), Expect = 5.9e-27, Sum P(2) = 5.9e-27
 Identities = 62/175 (35%), Positives = 94/175 (53%)

Query:    67 MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN 126
             M+KDF + +   D   YAG + ++F    A T +FWG ++DR GRKPVII G A  ++  
Sbjct:     1 MVKDFHMGEGS-DASFYAGILVATFSLVEAFTGMFWGALSDRVGRKPVIISGLAGTIVSL 59

Query:   127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF-REEHQALGLSTVSTXXXXXXXX 185
              + G + N+W+A+L R L G LNG +G I+    EI  R EH+   +  +          
Sbjct:    60 LIVGFAPNYWVALLGRGLGGLLNGNIGVIQTMVGEIVKRPEHERPAIGGL---------- 109

Query:   186 XXXXXXXXXQPAEKYPNLFSSESLFGKFPYFLP-CLCISLFAFGVTIAAFWLPET 239
                      +PA+ YP++FS + +FG+FPY LP  +C +L    +  A  +L ET
Sbjct:   110 -------LAKPADNYPSVFSRDGIFGRFPYLLPNVVCSTLLLGSILFAWAFLQET 157

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

SGD|S000000617 YCR023C "Vacuolar membrane protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 274 (101.5 bits), Expect = 3.2e-26, Sum P(2) = 3.2e-26
 Identities = 64/215 (29%), Positives = 107/215 (49%)

Query:    32 KDTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSF 91
             K+   G P  +L  + ++     +  SSLFP++YFM++DF IA  +  +  Y+GY+ SSF
Sbjct:     9 KEQMDGFPWVQLVVVSLVRFSEPIAFSSLFPYVYFMVRDFNIAPNDAQVSKYSGYLSSSF 68

Query:    92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGL 151
                + +++  WG  ++++GRK  +  G     +   + G S NF+ A++ R L+G LNG 
Sbjct:    69 ALCQVISAYHWGRFSEKHGRKITLTCGLIGTSVSLLILGFSRNFYQALVARSLMGLLNGN 128

Query:   152 LGPIKAYACEIFRE-EHQALGLSTVSTXXXXXXXXX---XXXXXXXXQPAEKYPNLFS-- 205
             +G I+    EI  E +HQAL  ST+                          + P  F   
Sbjct:   129 VGVIRTIIGEIATERKHQALAFSTMPLLFQFGAVVGPMIGGFLVFRDGTMNEVPLWFPHF 188

Query:   206 SESLFGKFPYFLPCLCISLFA-FGVTIAAFWLPET 239
             ++ +   +PY LP + + +F  FG+T A  +L ET
Sbjct:   189 AKRIIRSYPYALPNVVVCMFLMFGLTNATLFLEET 223

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94BZ1	ZIFL1_ARATH	No assigned EC number	0.6857	0.9385	0.7991	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033971001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (488 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036173001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (439 aa)			•						0.459
	GSVIVG00015514001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (456 aa)			•						0.434

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	407
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-21
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-19
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	9e-13
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	4e-12
PRK09874	408	PRK09874, PRK09874, drug efflux system protein Mdt	3e-11
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	6e-11
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	7e-09
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	3e-08
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	6e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-07
PRK11102	377	PRK11102, PRK11102, bicyclomycin/multidrug efflux	7e-07
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	6e-06
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	1e-05
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	5e-05
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	7e-05
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	8e-05
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	4e-04
PRK11043	401	PRK11043, PRK11043, putative transporter; Provisio	4e-04
COG0477	338	COG0477, ProP, Permeases of the major facilitator	0.001
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	0.001
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	0.002
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	0.003
PRK10489	417	PRK10489, PRK10489, enterobactin exporter EntS; Pr	0.003

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 94.8 bits (236), Expect = 1e-21
 Identities = 70/343 (20%), Positives = 123/343 (35%), Gaps = 46/343 (13%)

Query: 46  IWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGL 104
           +++      L  S L P L  ++ +D  I+       +  G + ++F  G AL     G 
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISP------TEIGLLLTAFSLGYALAQPLAGR 54

Query: 105 VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF 163
           ++DR+GR+ V+++G     +   L   + + W+ ++ R L G   G L P   A   + F
Sbjct: 55  LSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWF 114

Query: 164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS 223
             E +   L  +S  +G+G  +GP LGG LA             SLFG    FL    ++
Sbjct: 115 PPEERGRALGLLSAGFGLGAALGPLLGGLLA-------------SLFGWRAAFLILAILA 161

Query: 224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP 283
           L A  +       P    +                      +E         K LL++  
Sbjct: 162 LLAAVLAALLLPRPPPESKRP-----------------KPAEEAPAPLVPAWKLLLRDPV 204

Query: 284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSL 343
           L   + +              F+L    P     L  S  + G +L + G    + +L L
Sbjct: 205 LWLLLALLLFGFA-------FFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLL 257

Query: 344 YPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLL 386
               +R+ G      +A +L I        +++        + 
Sbjct: 258 GRLSDRL-GRRRRLLLALLLLILAALGLALLSLTESSLWLLVA 299

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 87.0 bits (216), Expect = 5e-19
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 7/154 (4%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  +++    + L    L P L  + +D  ++       S AG + S+F  G AL S+  
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSA------SQAGLIVSAFSLGYALGSLLA 54

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIK-AYACE 161
           G ++DR+GR+ V+++G     + + L   + + W+ ++ RFLLG   G L P   A   E
Sbjct: 55  GYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
            F  + +   L   S  +G+G ++GP LGG LA+
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 65.0 bits (159), Expect = 9e-13
 Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 16/152 (10%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
           + +  G+ + S   GL+ DR+GRKPV+++G    V+   +F LS N  + ++ RFL G  
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 149 NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE 207
                    A   +I+  E + + L  +S    +G ++GP LGG LAQ            
Sbjct: 65  AAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ-------FLGWR 117

Query: 208 SLFGKFPYFLPCLCISLFAFGVTIAAFWLPET 239
           + F     FL  L ++ F     + AF LPET
Sbjct: 118 APF----LFLAILALAAFI----LLAFLLPET 141

Length = 141

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G++ S+ + G A  ++F+G +ADR GR+ V++       +F  L  L+ N    ++ RF
Sbjct: 54  LGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRF 113

Query: 144 LLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
           L G  L GL+  + A   E   +  +   +  +   + IG  +G  L G+L
Sbjct: 114 LAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 9/180 (5%)

Query: 47  WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLV 105
           W+    T    S + PFL   ++   +      +  ++G V S +F+F  A+ S FWG +
Sbjct: 20  WLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFS-AIASPFWGGL 77

Query: 106 ADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFRE 165
           ADR GRK +++     + I   L GL+ N W  ++ R LLG L G +    A        
Sbjct: 78  ADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPR 137

Query: 166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF 225
                 L T+ST    G ++GP  GG LA      P  F + S+         C  ++LF
Sbjct: 138 NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV------LFLCFLVTLF 191

Length = 408

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 63.4 bits (155), Expect = 6e-11
 Identities = 62/316 (19%), Positives = 110/316 (34%), Gaps = 52/316 (16%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
           AG + +++  G AL +    L+  R  R+ +++   A  ++ N L  L+ +F + +L R 
Sbjct: 50  AGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARA 109

Query: 144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN 202
           L G  +G+   I  A A  +     +   L+ V T   +  ++G  LG FL Q       
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ------- 162

Query: 203 LFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASA 262
                 LFG    FL    ++L A    +    LP                        +
Sbjct: 163 ------LFGWRATFLAIAVLALLAL--LLLWKLLPP-----------------------S 191

Query: 263 EVKEEEGREATPKKSLLKNWPLMSSIIVY-CVFSLHDMAYSEIFSLWANSPKKLGGLNYS 321
           E+             LL+   ++  ++      + H   Y+ I       P       +S
Sbjct: 192 EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYI------RPFLESVAGFS 245

Query: 322 TQMVGEVLAITGF-----SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM 376
              V  VL   G      +LL  +L+      R L   ++     +L +    + P +A+
Sbjct: 246 VSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALAL 304

Query: 377 LSGFGLAFLLNCASVV 392
              F   F  + A   
Sbjct: 305 ALLFLWGFAFSPALQG 320

Length = 394

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 4/155 (2%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L  + ++ L   L     +  L ++    Q         + AG + S F  G  L ++  
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA--AEAGLLLSLFGLGGILGALLG 231

Query: 103 GLVADRYGRKPVIIM-GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLL-GPIKAYAC 160
           GL++DR GR+ ++++ G     +   L  L+ +  + ++   LLG   G     +   A 
Sbjct: 232 GLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLAS 291

Query: 161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ 195
           E+   E +       +T   +G  +GP L G L  
Sbjct: 292 ELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD 326

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG 146
           S F  G  L S  +G ++DR+GRK V+++ T    +   L   S N+ + ++ R L+G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 54.2 bits (130), Expect = 6e-08
 Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 10/159 (6%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           LFS W+  +        +F  +Y +  D  +   E        ++ ++   GR      +
Sbjct: 20  LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALF 73

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACE 161
           GL+AD++GRKP+++    +  +   L GL+    M  L+RF++G  + G       YA E
Sbjct: 74  GLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE 133

Query: 162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY 200
            + +  ++   + + + +GIG II      F+   AE Y
Sbjct: 134 SWPKHLKSKASAFLVSGFGIGNIIAAY---FMPSFAEAY 169

Length = 426

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGS--YAGYVGSSFMFGRALTSVFWGLVADRYGRKPV 114
           I +    + F  +   +        S   +G + S F  G  + S+F G + DR+GRK  
Sbjct: 19  IGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKS 78

Query: 115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG 146
           +++G    VI   L G +   +F+M ++ R ++G
Sbjct: 79  LLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112

Length = 449

>gnl|CDD|182964 PRK11102, PRK11102, bicyclomycin/multidrug efflux system; Provisional

 Score = 50.7 bits (122), Expect = 7e-07
 Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 32/182 (17%)

Query: 72  QIAKREEDIGSYAGYVG---SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL 128
            IA    D G  AG V    S+++ G A+  +F+G +AD +GRKPVI+ GT    +    
Sbjct: 16  VIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVA 72

Query: 129 FGLSVNFWMAVLTRFLLGSLNGLLGP-----IKAYACEIFREEHQALGLSTVSTAWGIGL 183
             L+      +  RF    L+GL        I A   ++F +E  +  +S V+    I  
Sbjct: 73  CALAQTIDQLIYMRF----LHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP 128

Query: 184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHR 242
           ++ P +GG+L          FS  ++F           ++L A       F+  PETL +
Sbjct: 129 LLAPIIGGWLL-------VWFSWHAIF---------WVLALAAILAAALVFFFIPETLPK 172

Query: 243 HN 244
             
Sbjct: 173 ER 174

Length = 377

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 26/148 (17%), Positives = 59/148 (39%), Gaps = 10/148 (6%)

Query: 44  FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG 103
             + + +L       +L  +L    +   ++         AG +        A+  +  G
Sbjct: 205 LWLLLALLLFGFAFFALLTYLPLYQEVLGLSA------LLAGLLLGLAGLLGAIGRLLLG 258

Query: 104 LVADRYGRKPVIIMGTASVVIFN---TLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYA 159
            ++DR GR+  +++    +++      L  L+ +    ++   LLG   GL+ P + A  
Sbjct: 259 RLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALV 318

Query: 160 CEIFREEHQALGLSTVSTAWGIGLIIGP 187
            ++  +E +       +TA  +G  +GP
Sbjct: 319 SDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 10/123 (8%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-------MGTASVVIFNTLFGLSV 133
            S       + M    + S   G +ADRY RK V+I       +  A +     L GL++
Sbjct: 33  ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNI 92

Query: 134 NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF 192
             W   +   +L        P  +A   ++  EE      S       +  I+GP +GG 
Sbjct: 93  --WQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150

Query: 193 LAQ 195
           +  
Sbjct: 151 MYA 153

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 10/147 (6%)

Query: 97  LTSVFWGLVADRYGRKPVI-IMGTASVVI--FNTLFGLSVNFWMAVLTRFLLGSLNGLLG 153
           L S   G +AD++ +  VI I+    V +     L      FW+A    FLLG+ + +  
Sbjct: 62  LLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYS 121

Query: 154 PIKA-YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK 212
           P K     E+  +E+ +     +     + ++ G AL  FL +         ++ S    
Sbjct: 122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE--SVNG---NTPSEILG 176

Query: 213 FPYFLPCLCISLFAFGVTIAAFWLPET 239
                  + +++   G  I A+ LP+ 
Sbjct: 177 RIAPAGLVLLAVAVLG-LIFAYRLPKV 202

Length = 1146

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS 147
           S ++ G A   +F G +ADR GRKPV I G A  +I + L  L+    + +  RFL G 
Sbjct: 45  SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGI 103

Length = 392

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 82  SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV----IIMGTASVVIFNTLFGLSVNFWM 137
           S A   G+ F FG  + S+ +G +ADR G +      ++    +V++ +TLF  ++   +
Sbjct: 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLL 344

Query: 138 AVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIG---LIIGPALGGFLA 194
             +  F    +NG    + A     +    +A G   V  A GIG    IIGP L G+L 
Sbjct: 345 GAIAGFF---VNGGQSGLYALMALFYPTAIRATG---VGWAIGIGRLGAIIGPILAGYLL 398

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 17/62 (27%), Positives = 32/62 (51%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S+ + G    ++  G +ADR GRK ++I+  A   +F+     + +F   ++ R L
Sbjct: 53  GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLL 112

Query: 145 LG 146
            G
Sbjct: 113 TG 114

Length = 406

>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 77  EEDIGSYAGYVGSS---FMFGRALTSVFWGLVADRYGRKPVIIMG 118
           + D+ + A  V +S   F+ G AL  + WG ++DRYGRKPV++ G
Sbjct: 33  QADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAG 77

Length = 401

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
           L ++ +  L   L +  L P L  ++    ++          G + S+F  G A+ S+  
Sbjct: 4   LLALALAALLLGLDLGLLSPALPLLLSTLSLS----SGRLLYGLLLSAFFLGYAIGSLLA 59

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYA 159
           G + DRYGR+ V+I+G    ++   L  L+ N    + ++ R L G   G L P+  A  
Sbjct: 60  GPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALL 119

Query: 160 CEIFREEHQALGLSTV--STAWGIGLIIGPALGGFLA 194
            E F E  +      +    A  +GL +GP L G L 
Sbjct: 120 SEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156

Length = 338

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 16/158 (10%)

Query: 40  ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTS 99
           +T LF +W  + C       L P L    + F +   E      A  +  +F  G  + S
Sbjct: 18  LTSLFFLWGFITCL---NDILIPHL---KEVFDLTYFE------ASLIQFAFFGGYFIMS 65

Query: 100 VFWGLVADRYGRKPVIIMGTASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLL-GPI 155
           +  GL+  + G K  I++G     +   LF     S ++   ++  F+L S  GLL    
Sbjct: 66  LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA 125

Query: 156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL 193
             Y   + + E  A  L+      G+G I+GP LG  L
Sbjct: 126 NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163

Length = 422

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 71  FQIAKREEDI---GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VIIMGTASVVIF 125
           F +   E+D+    S  G +G     G  + + FWG +AD+ GRK   +I +       F
Sbjct: 188 FVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAF 247

Query: 126 NTLFGLSVNFWMAVLTRFLLG-SLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI 184
            + F     F++    R L G  + G +  + +Y  E   +E +   LS +   W IG I
Sbjct: 248 FSSFVQGYGFFL--FCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGI 305

Query: 185 IGPAL 189
              A+
Sbjct: 306 YAAAM 310

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 57  ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII 116
           I        F    F  A  +    S  G V S F+ G  + ++F G ++DR+GRK  ++
Sbjct: 47  IGGALALPAFE-FKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLL 105

Query: 117 MGTASVV---IFNTLFGLSVNFWMAVLTRFLLG 146
           +     V   I   L   +++  M ++ R LLG
Sbjct: 106 IIALLFVIGAILMGLAAFALSVEMLIVGRVLLG 138

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|236700 PRK10489, PRK10489, enterobactin exporter EntS; Provisional

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 23/125 (18%)

Query: 88  GSSFMFGRALT----SVFWGL-----VADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM- 137
           GS+   G ++T    ++F GL     +ADRY RK +I++   +  +     GL++N ++ 
Sbjct: 49  GSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLG--FIGLALNAFLP 106

Query: 138 --AVLTRFLLGSLNGLLGPIKAYACE------IFREE-HQALGLSTVSTAWGIGLIIGPA 188
             ++L  +LLG  +G  G +   A        + RE   QA  ++ ++    +G +I PA
Sbjct: 107 EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVR--LGSVISPA 164

Query: 189 LGGFL 193
           LGG L
Sbjct: 165 LGGLL 169

Length = 417

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	407
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.98
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.98
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.98
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.97
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.97
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.97
PRK03545	390	putative arabinose transporter; Provisional	99.97
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
TIGR00893	399	2A0114 d-galactonate transporter.	99.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.97
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.97
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.97
PRK11663	434	regulatory protein UhpC; Provisional	99.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.97
TIGR00900	365	2A0121 H+ Antiporter protein.	99.97
PRK10133	438	L-fucose transporter; Provisional	99.97
KOG2615	451	consensus Permease of the major facilitator superf	99.97
PRK10091	382	MFS transport protein AraJ; Provisional	99.96
PRK10504	471	putative transporter; Provisional	99.96
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.96
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.96
PRK09952	438	shikimate transporter; Provisional	99.96
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.96
PRK09705	393	cynX putative cyanate transporter; Provisional	99.96
PLN00028	476	nitrate transmembrane transporter; Provisional	99.96
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.96
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.96
KOG0569	485	consensus Permease of the major facilitator superf	99.96
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.96
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.96
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.96
PRK03699	394	putative transporter; Provisional	99.96
PRK03893	496	putative sialic acid transporter; Provisional	99.96
TIGR00895	398	2A0115 benzoate transport.	99.95
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.95
PRK11043	401	putative transporter; Provisional	99.95
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.95
TIGR00898	505	2A0119 cation transport protein.	99.95
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.95
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.95
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.95
PRK03633	381	putative MFS family transporter protein; Provision	99.95
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.95
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.95
PRK05122	399	major facilitator superfamily transporter; Provisi	99.95
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
PRK12382	392	putative transporter; Provisional	99.95
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.95
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.95
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.95
KOG2533	495	consensus Permease of the major facilitator superf	99.94
PRK10489	417	enterobactin exporter EntS; Provisional	99.94
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.94
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.94
PRK09874	408	drug efflux system protein MdtG; Provisional	99.94
PRK10054	395	putative transporter; Provisional	99.94
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.94
KOG2532	466	consensus Permease of the major facilitator superf	99.94
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.94
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.94
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.93
TIGR00901	356	2A0125 AmpG-related permease.	99.93
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.93
KOG0254	513	consensus Predicted transporter (major facilitator	99.93
PRK15011	393	sugar efflux transporter B; Provisional	99.92
PRK11010	491	ampG muropeptide transporter; Validated	99.92
PRK11902	402	ampG muropeptide transporter; Reviewed	99.92
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.92
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.92
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.91
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.91
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.91
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.9
PRK09528	420	lacY galactoside permease; Reviewed	99.9
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.89
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.89
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.88
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.88
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.88
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.88
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.88
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.87
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.87
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.87
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.86
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.86
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.84
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.82
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.82
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.81
PRK09669	444	putative symporter YagG; Provisional	99.79
PTZ00207	591	hypothetical protein; Provisional	99.78
PRK10429	473	melibiose:sodium symporter; Provisional	99.77
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.76
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.75
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.75
PF13347	428	MFS_2: MFS/sugar transport protein	99.74
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.73
PRK09848	448	glucuronide transporter; Provisional	99.73
COG2211	467	MelB Na+/melibiose symporter and related transport	99.72
PRK11462	460	putative transporter; Provisional	99.7
KOG2563	480	consensus Permease of the major facilitator superf	99.7
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.69
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.68
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.67
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.67
PRK10642	490	proline/glycine betaine transporter; Provisional	99.65
KOG3626	735	consensus Organic anion transporter [Secondary met	99.64
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.63
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.62
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.62
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.62
PRK15011	393	sugar efflux transporter B; Provisional	99.61
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.58
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.58
PRK05122	399	major facilitator superfamily transporter; Provisi	99.58
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.57
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.55
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.55
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.54
PRK09528	420	lacY galactoside permease; Reviewed	99.54
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.54
PRK09874	408	drug efflux system protein MdtG; Provisional	99.52
PRK12382	392	putative transporter; Provisional	99.51
PRK09705	393	cynX putative cyanate transporter; Provisional	99.51
PRK10489	417	enterobactin exporter EntS; Provisional	99.51
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.51
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.5
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.5
PRK03633	381	putative MFS family transporter protein; Provision	99.49
TIGR00893	399	2A0114 d-galactonate transporter.	99.48
PRK03893	496	putative sialic acid transporter; Provisional	99.47
PRK03699	394	putative transporter; Provisional	99.47
PRK03545	390	putative arabinose transporter; Provisional	99.47
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.45
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.45
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.44
PRK09952	438	shikimate transporter; Provisional	99.44
TIGR00895	398	2A0115 benzoate transport.	99.41
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.41
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.4
PRK11663	434	regulatory protein UhpC; Provisional	99.39
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.38
TIGR00891	405	2A0112 putative sialic acid transporter.	99.37
PRK12307	426	putative sialic acid transporter; Provisional	99.36
TIGR00900	365	2A0121 H+ Antiporter protein.	99.36
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.36
PRK10504	471	putative transporter; Provisional	99.34
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.34
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.33
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.33
PLN00028	476	nitrate transmembrane transporter; Provisional	99.32
PRK11010	491	ampG muropeptide transporter; Validated	99.31
KOG0569	485	consensus Permease of the major facilitator superf	99.31
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.3
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.29
PRK15075	434	citrate-proton symporter; Provisional	99.28
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.28
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.27
TIGR00898	505	2A0119 cation transport protein.	99.27
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.26
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.26
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.26
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.26
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.25
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.24
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.24
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.23
PRK10054	395	putative transporter; Provisional	99.23
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.22
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.21
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.17
PRK10091	382	MFS transport protein AraJ; Provisional	99.17
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.17
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.17
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.17
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.17
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.16
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.15
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.15
PRK11902	402	ampG muropeptide transporter; Reviewed	99.15
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.14
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.12
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.11
TIGR00901	356	2A0125 AmpG-related permease.	99.1
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.07
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.07
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.06
PF13347	428	MFS_2: MFS/sugar transport protein	99.05
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.05
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.05
KOG0637	498	consensus Sucrose transporter and related proteins	99.04
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.04
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.03
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.02
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.01
PRK11043	401	putative transporter; Provisional	99.01
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.0
PRK09848	448	glucuronide transporter; Provisional	99.0
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.98
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.96
PRK10133	438	L-fucose transporter; Provisional	98.96
PRK10429	473	melibiose:sodium symporter; Provisional	98.96
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.95
PRK09669	444	putative symporter YagG; Provisional	98.94
COG0477	338	ProP Permeases of the major facilitator superfamil	98.87
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.84
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.83
KOG2532	466	consensus Permease of the major facilitator superf	98.79
KOG3762	618	consensus Predicted transporter [General function	98.76
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.74
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.74
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.74
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.72
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.71
PRK11462	460	putative transporter; Provisional	98.69
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.69
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.69
COG2211	467	MelB Na+/melibiose symporter and related transport	98.65
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.63
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.59
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.59
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.57
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.55
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.54
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.51
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.49
PF12832	77	MFS_1_like: MFS_1 like family	98.47
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.43
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.42
KOG0254	513	consensus Predicted transporter (major facilitator	98.41
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.37
PTZ00207	591	hypothetical protein; Provisional	98.28
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.25
KOG2533	495	consensus Permease of the major facilitator superf	98.15
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.15
KOG2615	451	consensus Permease of the major facilitator superf	98.13
COG3202	509	ATP/ADP translocase [Energy production and convers	98.1
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.09
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.01
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.01
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.73
PF12832	77	MFS_1_like: MFS_1 like family	97.65
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.61
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.51
KOG3810	433	consensus Micronutrient transporters (folate trans	97.49
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.45
KOG2563	480	consensus Permease of the major facilitator superf	97.23
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.23
KOG1330	493	consensus Sugar transporter/spinster transmembrane	96.98
KOG3762	618	consensus Predicted transporter [General function	96.96
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.83
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	96.81
PRK03612	521	spermidine synthase; Provisional	96.75
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.69
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.68
KOG3097	390	consensus Predicted membrane protein [Function unk	96.65
KOG2325	488	consensus Predicted transporter/transmembrane prot	96.64
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	96.38
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.29
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	96.02
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.0
KOG3098	461	consensus Uncharacterized conserved protein [Funct	95.94
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	95.65
TIGR00805	633	oat sodium-independent organic anion transporter.	95.28
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.28
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	95.07
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	94.63
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	94.6
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	94.02
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	93.47
KOG3880	409	consensus Predicted small molecule transporter inv	92.79
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	91.42
KOG0637	498	consensus Sucrose transporter and related proteins	90.89
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	87.64
KOG3880	409	consensus Predicted small molecule transporter inv	86.31
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	81.17

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-31  Score=239.72  Aligned_cols=289  Identities=20%  Similarity=0.229  Sum_probs=248.2

Q ss_pred             CCchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHH
Q 015396           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (407)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (407)
                      +..+..++.+.++.|.......+....+|++.+|+|+|..+      .|+..++|.++..++.|+...+.||+.||++++
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~------aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl   82 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGA------AGQLITAYALGVALGAPLLALLTGRLERRRLLL   82 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence            34557788889999999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ....++.++++++++++|++.++++|++.|++.|.+.+. .++.++..|+++|++++++...+..++.++|.+++.++.+
T Consensus        83 ~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~  162 (394)
T COG2814          83 GLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ  162 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            999999999999999999999999999999999998886 9999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccc
Q 015396          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (407)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (407)
                             .+|||+.|         ...++.+++.++. +..+|  |+..+++++.                     +..+
T Consensus       163 -------~~GWR~~F---------~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~---------------------~~~~  203 (394)
T COG2814         163 -------LFGWRATF---------LAIAVLALLALLLLWKLLP--PSEISGSLPG---------------------PLRT  203 (394)
T ss_pred             -------HhhHHHHH---------HHHHHHHHHHHHHHHHhCC--CccCCCCCCc---------------------chhH
Confidence                   55555555         7777777765544 56678  2221111110                     1123


Q ss_pred             cccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchh
Q 015396          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (407)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (407)
                      ..+++|+|+++...+..++....++..+++...++.+.     .|++....++.+..++++.++++. +++++.|| +.+
T Consensus       204 ~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v-----~g~s~~~vs~~Ll~~Gv~~~~Gn~-~gGrl~dr-~~~  276 (394)
T COG2814         204 LLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV-----AGFSVSAVSLVLLAFGIAGFIGNL-LGGRLADR-GPR  276 (394)
T ss_pred             HHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc-----cCCCHhHHHHHHHHHHHHHHHHHH-HHhhhccc-cch
Confidence            46789999999999999999988888888888777776     899999999999999999999996 99999999 888


Q ss_pred             HHHHHHHHHHHHHHhhhhHHHhh
Q 015396          355 MVARIAGVLTIPLLTSYPYIAML  377 (407)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~  377 (407)
                      +.+.....+.++.++.+.+....
T Consensus       277 ~~l~~~~~l~a~~~l~l~~~~~~  299 (394)
T COG2814         277 RALIAALLLLALALLALTFTGAS  299 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcch
Confidence            88888877777777766555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.98  E-value=3.2e-30  Score=241.83  Aligned_cols=297  Identities=14%  Similarity=0.087  Sum_probs=224.8

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (407)
                      .+|+.++.+++..++++++...+....|.+.+|+|.+..+      .|++.+++.+++.+++++.|+++||+|||+++..
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~   78 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATM------FGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG   78 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence            4566677888888899999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCC
Q 015396          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (407)
                      +.++.+++.+++++++|++.+++.|++.|++.+...+. ..++.|++|+++|++++++++.+..+|..+++++++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  158 (412)
T TIGR02332        79 IMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL  158 (412)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999888776 78899999999999999999999999999999999988741


Q ss_pred             CCCCCCcccccccccCCCChhHHHHHHHHHHHH-HHHHhccccCCCCCCC-Ccchhhhhhhhhhhchhhhhhh--h-ccc
Q 015396          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHND-DDDSCDVSYDALESASAEVKEE--E-GRE  271 (407)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~-~~~  271 (407)
                      .+ .....|         ||..+.+.++..++. .+..+++||+|++.+. .+++++...+..+....+.++.  . ++.
T Consensus       159 ~~-~~~~~g---------wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (412)
T TIGR02332       159 DG-LMALKG---------WQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHA  228 (412)
T ss_pred             CC-CCCccc---------hhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccc
Confidence            10 001234         555557777666553 4455677888754321 1111111111111111000000  0 000


Q ss_pred             ----ccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 015396          272 ----ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (407)
Q Consensus       272 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l  347 (407)
                          ...++.++ ++.++...+.+++.......+..++|.++.+.    +.|++..+++.......++..++.+ +.+++
T Consensus       229 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----~~~~s~~~~~~~~~~~~l~~~~g~l-~~g~l  302 (412)
T TIGR02332       229 AMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSF----NQGSSNIMIGLLAAIPQFCTIFGMI-WWSRH  302 (412)
T ss_pred             cccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCcHHHhHHHhhHHHHHHHHHHH-HHHHH
Confidence                11223333 57778777777777777778888999988652    1467788889999999999999985 89999


Q ss_pred             HHHhchhHH
Q 015396          348 ERILGPIMV  356 (407)
Q Consensus       348 ~~~~~~~~~  356 (407)
                      .||+++|+.
T Consensus       303 ~dr~~~r~~  311 (412)
T TIGR02332       303 SDRLKERKH  311 (412)
T ss_pred             hcccCccHH
Confidence            999987664

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.98  E-value=3.7e-30  Score=236.66  Aligned_cols=303  Identities=13%  Similarity=0.042  Sum_probs=211.4

Q ss_pred             hhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc
Q 015396           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (407)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~  132 (407)
                      +......+.+.+|.+.+|+|+++++      .|++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....
T Consensus         3 ~~~~~~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~   76 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDIDVSKEE------LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP   76 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh
Confidence            4455677889999999999999999      9999999999999999999999999999998776665555554433344


Q ss_pred             chHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccC
Q 015396          133 VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK  212 (407)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~  212 (407)
                      ++++.+++.|+++|++.+...+....++|++|+++|++++++.+.+..+|..+++++++++.+       .+|       
T Consensus        77 ~~~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~-------~~g-------  142 (368)
T TIGR00903        77 FNYEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT-------AGG-------  142 (368)
T ss_pred             ccHHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccc-------
Confidence            799999999999999988765567777999999999999999999999999999999999987       344       


Q ss_pred             CCChhHHHHHHHHHHHH-HHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHH
Q 015396          213 FPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY  291 (407)
Q Consensus       213 ~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (407)
                        ||..+++.++++++. ++..+++||+|+++++..+. +              +    ..+.++++++++.++...+.+
T Consensus       143 --Wr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~-~--------------~----~~~~~~~ll~~~~~~~~~~~~  201 (368)
T TIGR00903       143 --LQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGF-K--------------D----AVKEFGALAGRKDLWIIGAIL  201 (368)
T ss_pred             --hHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcch-H--------------H----HHHHHHHHHcChhHHHHHHHH
Confidence              555557766666554 44566788877543211100 0              0    001356788999999999999


Q ss_pred             HHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhch---hHH-HHHHHHHHHHH
Q 015396          292 CVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP---IMV-ARIAGVLTIPL  367 (407)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~  367 (407)
                      ++.......+..+.|.|+.+      .|++.. .+.......+.+.++.    +++.||..|   |+. ......+.++.
T Consensus       202 ~~~~~~~~~~~~wlp~~L~~------~g~s~~-~~~~~~l~~~~g~~g~----~~~~d~~~r~~~r~~~~~~~~~~~a~~  270 (368)
T TIGR00903       202 GFGVALFDNLAIWLEAALRP------AGLEDI-AGDAVALAILAGLIGV----AVIPDRVARAGLRSIYIRAAALLIAAF  270 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------CCCChH-HHHHHHHHHHHHHHHH----HHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999965      456654 5666655555555554    445555432   333 32233333333


Q ss_pred             HhhhhHHHhhhhhhhHhhhh------hhHHHHHHHhhcCCCCCCCC
Q 015396          368 LTSYPYIAMLSGFGLAFLLN------CASVVKNLLSSSGPGSKRSC  407 (407)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~rs~  407 (407)
                      +..+..............+.      ..+......+|.+|++.|++
T Consensus       271 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt  316 (368)
T TIGR00903       271 FLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGK  316 (368)
T ss_pred             HHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCc
Confidence            33333222111111111111      11234567889999998874

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.98  E-value=9.5e-30  Score=240.48  Aligned_cols=287  Identities=15%  Similarity=0.120  Sum_probs=206.4

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcc---cccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQI---AKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~  115 (407)
                      +++.+...++..++++++...+....|.+.++++.   +..+  . ...+.+.+...++..++++++|+++||+|||+++
T Consensus        20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l   96 (432)
T PRK10406         20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQ--L-LQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSM   96 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            34445566678889999999999999999999864   3322  0 0123334455566669999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccchHH--------HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHH
Q 015396          116 IMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIG  186 (407)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  186 (407)
                      ..+.++++++++++++++++.        .+++.|+++|++.|...+. .++++|++|+++|++..++.+.+...|..++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~  176 (432)
T PRK10406         97 LISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA  176 (432)
T ss_pred             HHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence            999999999999999988764        6899999999999887775 9999999999999999999988888888888


Q ss_pred             HHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhh
Q 015396          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKE  266 (407)
Q Consensus       187 ~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (407)
                      +.+...+.....+       . ....++||.++++.++..++.+.....+||+++++.      +..             
T Consensus       177 ~~~~~~~~~~~~~-------~-~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~------~~~-------------  229 (432)
T PRK10406        177 LLVVVVLQQTLED-------A-ELREWGWRIPFALGAVLAVVALWLRRQLDETSQQET------RAL-------------  229 (432)
T ss_pred             HHHHHHHHHhCCH-------H-HHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHH------hhh-------------
Confidence            8776555421100       0 000356777778877776665554445566543210      000             


Q ss_pred             hhcccccccccccccchhHHHHHHHHHH-hhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHH
Q 015396          267 EEGREATPKKSLLKNWPLMSSIIVYCVF-SLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (407)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~  345 (407)
                         ++..+.++++++++.+...+...+. ......+..++|.|+.+.     +|++..+.+.......++..+++. +.+
T Consensus       230 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~~~~~~i~~~~~~i~~~-~~G  300 (432)
T PRK10406        230 ---KEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-----AGMHANVASGIMTAALFVFMLIQP-LIG  300 (432)
T ss_pred             ---cccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHH
Confidence               0112456677888777655544433 444556667788887654     688888888888888888888775 678


Q ss_pred             HHHHHhchhHHHHHHHHHH
Q 015396          346 FLERILGPIMVARIAGVLT  364 (407)
Q Consensus       346 ~l~~~~~~~~~~~~~~~~~  364 (407)
                      ++.||++||+.+..+..+.
T Consensus       301 ~l~Dr~grr~~~~~~~~~~  319 (432)
T PRK10406        301 ALSDKIGRRTSMLCFGSLA  319 (432)
T ss_pred             HHHHHcCchHHHHHHHHHH
Confidence            9999999998877665544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=5.7e-31  Score=232.07  Aligned_cols=306  Identities=18%  Similarity=0.149  Sum_probs=247.3

Q ss_pred             CCchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHH
Q 015396           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (407)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (407)
                      +.+++.++.+++.+...++.+..+....|.+.++.++|.+|      .|++.+.+.+.+.++..+.|.++||.+.|+.+.
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~------lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~   98 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQ------LGILGSAFSITYGVSKFVMGVLSDRSNPRYFMA   98 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHhhhhcccCCCceeeh
Confidence            34455566788899999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhh--hhh
Q 015396          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFL  193 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l  193 (407)
                      +++++.++.+++++++++.+.+.+..++.|..+|...| +...++.|+++++||+..++++++.++|+.+.|++.  +++
T Consensus        99 ~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~  178 (448)
T COG2271          99 FGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFF  178 (448)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999766 599999999999999999999999999999999999  788


Q ss_pred             cCCCCCCCCcccccccccCCCChhHHHHHHHHHHH-HHHHHhccccCCCCCCCCcchhhhhhhhhhhc-hhhhhhhhccc
Q 015396          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESA-SAEVKEEEGRE  271 (407)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  271 (407)
                      ..                +++|+..+++.++++++ .++.++.++|+|+...-++-++-.. +..+.. ++++.+.-...
T Consensus       179 ~~----------------~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~-d~~e~~~~~~~~~~ls~~  241 (448)
T COG2271         179 AF----------------HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRG-DPLEIYEEEKENEGLTAW  241 (448)
T ss_pred             Hh----------------ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhc-CchhhhhhhccCCCccHH
Confidence            76                34455555888877766 4555677788887643332211110 111111 00000001112


Q ss_pred             ccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 015396          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  351 (407)
                      +.-.+.+++||.+|...+.+++....-.+...+.|.|+.+.     .|+|..+++...+.+-++++.+.+ +.||++||.
T Consensus       242 ~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~-----k~~s~~~a~~a~~lfE~agl~G~L-l~GwlSDkl  315 (448)
T COG2271         242 QIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEV-----KGFSLVKANWAISLFEVAGLPGTL-LAGWLSDKL  315 (448)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-----cCCCHHHHHHHHHHHHHHhhHHHH-HHHHHHHHh
Confidence            23456789999999999999999999999999999999987     899999999999999999999996 899999985


Q ss_pred             --chhHHHHHHHHHHHHHHhhh
Q 015396          352 --GPIMVARIAGVLTIPLLTSY  371 (407)
Q Consensus       352 --~~~~~~~~~~~~~~~~~~~~  371 (407)
                        |||....+.+.+.....+..
T Consensus       316 fkgrR~p~~~i~~~~i~~~~~~  337 (448)
T COG2271         316 FKGRRGPMALIFMLLITASLVL  337 (448)
T ss_pred             cccccchHHHHHHHHHHHHHHH
Confidence              66766555555444444433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.97  E-value=1.8e-29  Score=242.35  Aligned_cols=306  Identities=15%  Similarity=0.113  Sum_probs=238.0

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      |..+..+++..++..++..+++..+|.+.+++|.+.++      .+|+.+.+.++..++.+++|+++||+|||++++.+.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~------~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~   78 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNE------LLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGG   78 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            45566788899999999999999999999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhc-cccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      +++.++++++++++|++.++++|+++|++.+...+. ...+.+.+ |+++|++++++......+|..+||.+++++.+  
T Consensus        79 ~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~--  156 (495)
T PRK14995         79 TLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE--  156 (495)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Confidence            999999999999999999999999999998887775 77776765 67999999999999999999999999999998  


Q ss_pred             CCCCCcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCCCCCCcchhhhhh---------hhhhhchh-----
Q 015396          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSY---------DALESASA-----  262 (407)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~-----  262 (407)
                           .+|||+.|         ++.....++.+ +..+++||++++..++.+......         ...++..+     
T Consensus       157 -----~~gwr~~f---------~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~  222 (495)
T PRK14995        157 -----HFYWGSVF---------LINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSL  222 (495)
T ss_pred             -----cCChHHHH---------HHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCch
Confidence                 45555544         66655544433 345566775543222211111000         00000000     


Q ss_pred             -----------------hhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhH
Q 015396          263 -----------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMV  325 (407)
Q Consensus       263 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~  325 (407)
                                       ...|.+.+.+....+++|++.+....+..++......+...++|.|++..     +|+++.++
T Consensus       223 ~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v-----~g~s~~~a  297 (495)
T PRK14995        223 WVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFV-----HGLSPLEA  297 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHH
Confidence                             01122223344456788999888877777777666666777788887766     79999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhH
Q 015396          326 GEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  373 (407)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (407)
                      |..+....++..++.. +.+++.||+++|+.+..+..+..++...+..
T Consensus       298 g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~  344 (495)
T PRK14995        298 GMFMLPVMVASGFSGP-IAGILVSRLGLRLVATGGMALSALSFYGLAM  344 (495)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999985 8899999999999888888777766655443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.97  E-value=1e-30  Score=249.51  Aligned_cols=295  Identities=14%  Similarity=0.075  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (407)
                      +..+++.+++.+++...+.+..|.+.+++|.+..+      .|++.+++.+++.+++++.|+++||+|||+++..+.+++
T Consensus        31 ~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~  104 (467)
T PRK09556         31 YLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTE------LGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS  104 (467)
T ss_pred             HHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence            33566777778889999999999999999999999      999999999999999999999999999999998888887


Q ss_pred             HHHHHHhhc-----cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCC
Q 015396          123 VIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (407)
Q Consensus       123 ~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (407)
                      +++.+..+.     +++++.+++.|+++|++.+...+. .++++|++|+++|++++++...+.++|.++++.++.++.+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            777665554     689999999999999998887775 89999999999999999999999999999999998776651


Q ss_pred             CCCCCCcccccccccCCCChhHHHHHHHHHHHH-HHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccc-cc-
Q 015396          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE-AT-  273 (407)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  273 (407)
                      .      +       ..+|+..+.+.++..++. ++.+++.+++|++....++++ ...+... .+++..+.++.. .. 
T Consensus       185 ~------~-------~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~  249 (467)
T PRK09556        185 F------F-------DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEE-IFGEPIS-EEDKETESTDMTKWQI  249 (467)
T ss_pred             h------c-------cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhh-cccCccc-hhhhccccccCcHHHH
Confidence            0      0       112444446655555443 333444566554322111110 0000000 000000000000 01 


Q ss_pred             ccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhch
Q 015396          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (407)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (407)
                      ..+..++++.++...+..++......+...+.|.|+.+.     +|++..+.+.......++..++.. +.+++.||+++
T Consensus       250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~-----~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~g~  323 (467)
T PRK09556        250 FVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQE-----LGFSKEDAINTFTLFEIGALVGSL-LWGWLSDLANG  323 (467)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC
Confidence            122368899999988888887777777788899888765     789999999999989999999885 89999999999


Q ss_pred             hHHHHHHHHHH
Q 015396          354 IMVARIAGVLT  364 (407)
Q Consensus       354 ~~~~~~~~~~~  364 (407)
                      |+.........
T Consensus       324 r~~~~~~~~~~  334 (467)
T PRK09556        324 RRALVACIALA  334 (467)
T ss_pred             CchHHHHHHHH
Confidence            88766554433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.97  E-value=9.8e-30  Score=248.92  Aligned_cols=191  Identities=19%  Similarity=0.251  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (407)
                      ++.+.++.+...+....+...+|.+.+++|++..+      .+++.+++.++.+++++++|+++||+|||++++++.++.
T Consensus       169 ~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~------~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       169 FFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSG------KGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            34555666677777788889999999999999988      999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 015396          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (407)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  201 (407)
                      +++.++++++++++.++++|++.|++.|...+. .+++.|++|+++|++.+++...+..+|.++++.++..+..      
T Consensus       243 ~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~------  316 (742)
T TIGR01299       243 GFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIP------  316 (742)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            999999999999999999999999998887775 9999999999999999999999999999999999988876      


Q ss_pred             Cccccccc----ccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 015396          202 NLFSSESL----FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDD  246 (407)
Q Consensus       202 ~~~gw~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  246 (407)
                       .+||+..    +...+||+.+++.++..++.++..+++||+|++...+
T Consensus       317 -~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~  364 (742)
T TIGR01299       317 -HYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLEN  364 (742)
T ss_pred             -hccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence             5566532    2245788888888888877777788899999875433

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=3.9e-29  Score=234.84  Aligned_cols=343  Identities=14%  Similarity=0.169  Sum_probs=233.6

Q ss_pred             CCchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHH
Q 015396           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (407)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (407)
                      +.+|+.+...++..+.+.++.....+..|.+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~   81 (405)
T TIGR00891         8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVD------AASLISAALISRWFGALMFGLWGDRYGRRLPMV   81 (405)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            45567777888999999999999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      .+.++.+++.++++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~  161 (405)
T TIGR00891        82 TSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP  161 (405)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887775 9999999999999999999999999999999999999886


Q ss_pred             CCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhh---hhhhcccc
Q 015396          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV---KEEEGREA  272 (407)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  272 (407)
                             ..+       .+|+..+.+.++..++.++....+||++++.++++++++ ..+..++.....   ++..++..
T Consensus       162 -------~~~-------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  226 (405)
T TIGR00891       162 -------VWG-------DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKAL-VRTMVDILYGGEHRIANIVMTLA  226 (405)
T ss_pred             -------hcC-------ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhh-hhhHHHHHhccchhhhhhhhhhh
Confidence                   222       125555566666555555555667776543221111100 000000000000   00000000


Q ss_pred             ccccccc-ccch-hHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015396          273 TPKKSLL-KNWP-LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (407)
Q Consensus       273 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  350 (407)
                      ...++.. +++. +........+..........++|.|..+.     +|++..+.+.+....+++..++.. +.+++.||
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr  300 (405)
T TIGR00891       227 AAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-----LGLSPHTVANIVVFSNIGAIVGGC-VFGFLGDW  300 (405)
T ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            0001111 1111 12222222233333334445566666544     788999999999999999999985 88999999


Q ss_pred             hchhHHHHHHHHHHHHHHhhhhHHH-hhhhhhhH-h-----hhhhhHHHHHHHhhcCCCCCCC
Q 015396          351 LGPIMVARIAGVLTIPLLTSYPYIA-MLSGFGLA-F-----LLNCASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-----~~~~~~~~~~~~~~~~p~~~rs  406 (407)
                      +++|+.+..+.....+......... ........ .     .............+.+|++.|+
T Consensus       301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (405)
T TIGR00891       301 LGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA  363 (405)
T ss_pred             hCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhH
Confidence            9999988877665533322211111 11110110 0     1111223456678888888775

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=2.8e-29  Score=237.41  Aligned_cols=330  Identities=17%  Similarity=0.250  Sum_probs=232.0

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (407)
                      .+++.+...++..+.+.++.....+..|.+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~   88 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDME------GAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW   88 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            3445566777888888899999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCC
Q 015396          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (407)
                      +.++.+++.++++++++++.++++|+++|++.+...+. ..++.|++|+++|++++++...+..+|.++++.+.+.+.+ 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~-  167 (426)
T PRK12307         89 SIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE-  167 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc-
Confidence            99999999999999999999999999999998877765 8999999999999999999999999999999999998887 


Q ss_pred             CCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccc
Q 015396          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (407)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (407)
                            .+|||+         .+++..+..++.+......||++++.+++.+          ...++.++..+......+
T Consensus       168 ------~~~w~~---------~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~  222 (426)
T PRK12307        168 ------AYGWRA---------AFFVGLLPVLLVIYIRARAPESKEWEEAKLS----------GKGKHSQSAWSVFSLSMK  222 (426)
T ss_pred             ------cCCHHH---------HHHHHHHHHHHHHHHHHHCCCChHHHHhhhh----------ccccccccchhhhhHHHH
Confidence                  444544         4455443333222222223443221110000          000000000011122456


Q ss_pred             cccccchhHHHHHHHHH---HhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhch
Q 015396          277 SLLKNWPLMSSIIVYCV---FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (407)
Q Consensus       277 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (407)
                      ++++++.++.......+   ..........++|.|..+      .|+++.+.+.+.+...++.++++. +.+++.||+++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~  295 (426)
T PRK12307        223 GLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG------EGFDTGVVSNLMTAAAFGTVLGNI-VWGLCADRIGL  295 (426)
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence            67788777654433222   222222345567777654      578888999999999999999985 88999999999


Q ss_pred             hHHHHHHHHHHHHHHhhhhHHHhhhhhhh-Hhhh-------hhhHHHHHHHhhcCCCCCCC
Q 015396          354 IMVARIAGVLTIPLLTSYPYIAMLSGFGL-AFLL-------NCASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~p~~~rs  406 (407)
                      |+....+.++..+..+............. ...+       +..........+.+|++.|+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g  356 (426)
T PRK12307        296 KKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG  356 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHh
Confidence            99888887776655544332221111111 1111       11223445667888887665

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.97  E-value=8.3e-29  Score=232.68  Aligned_cols=321  Identities=17%  Similarity=0.121  Sum_probs=232.3

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (407)
                      .+|..+...+...+.+.++.....+..|.+.+++|.++++      .+++.+.+.++..+++++.|+++||+|||+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   85 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQ------MGWAFSAGILGLLPGALLGGRLADRIGRKRILIV   85 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            4555666777888888999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCC
Q 015396          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (407)
                      +.++..++.+++.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.+++.+.+ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-  164 (406)
T PRK11551         86 SVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG-  164 (406)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence            99999999999999999999999999999998887775 8999999999999999999999999999999999988877 


Q ss_pred             CCCCCCcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccc
Q 015396          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPK  275 (407)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (407)
                                     ..+|+..+++.++..++.. +...++||++++.++++++++..                   ...
T Consensus       165 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------------~~~  210 (406)
T PRK11551        165 ---------------DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA-------------------PVL  210 (406)
T ss_pred             ---------------ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh-------------------hhH
Confidence                           3445555566665544433 34456787664322211100000                   000


Q ss_pred             cccc---ccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 015396          276 KSLL---KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (407)
Q Consensus       276 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (407)
                      +..+   +.+..+......++..........+.|.+..+      .|++..+.+......+++..+++. +.+++.||++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g  283 (406)
T PRK11551        211 RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG------QGLSRSQAGLVQIAFNIGGALGSL-LIGALMDRLR  283 (406)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            0111   11222233333333333344455567777654      688999999999999999999985 8899999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhhHHHhhhhhhhH-hhhh-----hhHHHHHHHhhcCCCCCCC
Q 015396          353 PIMVARIAGVLTIPLLTSYPYIAMLSGFGLA-FLLN-----CASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~p~~~rs  406 (407)
                      +++.+..+.....++++.+...+........ ...+     ..........+.+|++.|+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g  343 (406)
T PRK11551        284 PRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRG  343 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhh
Confidence            9998887666655555544333322111111 1111     1123445678888888775

>PRK03545 putative arabinose transporter; Provisional

Probab=99.97  E-value=7.7e-29  Score=231.45  Aligned_cols=274  Identities=15%  Similarity=0.147  Sum_probs=208.6

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      |..++.+.+..+..........+.+|.+.+++|.++++      .|++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   81 (390)
T PRK03545          8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQ------VGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLF   81 (390)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence            34445555555554444455667789999999999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 015396          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (407)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (407)
                      ++..++++.+++++|++.+++.|+++|++.+...+. .+++.|++|+++|++++++...+.++|..++|++++.+.+   
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~---  158 (390)
T PRK03545         82 VLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ---  158 (390)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH---
Confidence            999999999999999999999999999998887775 8999999999999999999999999999999999999987   


Q ss_pred             CCCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccc
Q 015396          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (407)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (407)
                          .+|         |+..+.+.++..++..+. ...+||.+++++   +  +                    .++.++
T Consensus       159 ----~~g---------w~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~---~--~--------------------~~~~~~  200 (390)
T PRK03545        159 ----YLG---------WRTTFLAIGGGALITLLLLIKLLPLLPSEHS---G--S--------------------LKSLPL  200 (390)
T ss_pred             ----Hhc---------HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc---c--h--------------------HHHHHH
Confidence                344         455557777666554433 344565432110   0  0                    012345


Q ss_pred             ccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHH
Q 015396          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (407)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  357 (407)
                      .++++.++......++..........+.+.++.+.     .|++..+.+.+....+++.++++. ..+++.||+++|...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~g~l~dr~~~~~~~  274 (390)
T PRK03545        201 LFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV-----AGLSENFATLLLLLFGGAGIIGSV-LFSRLGNRHPSGFLL  274 (390)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCccHHHHHHHHHHHHHHHHHH-HHHHHhhccchhHHH
Confidence            77888877665555554444444444555555443     688899999999999999999985 889999999887654


Q ss_pred             HHHHHHHHHH
Q 015396          358 RIAGVLTIPL  367 (407)
Q Consensus       358 ~~~~~~~~~~  367 (407)
                       .+..+..+.
T Consensus       275 -~~~~~~~~~  283 (390)
T PRK03545        275 -IAIALLLVC  283 (390)
T ss_pred             -HHHHHHHHH
Confidence             343333333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=9.6e-29  Score=237.10  Aligned_cols=341  Identities=14%  Similarity=0.108  Sum_probs=222.3

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHH-HHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~-~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      +.+....+..+++.++...+....|.+.++++.+.++. ......+ ..++..+++.+++++.|+++||+|||+++.++.
T Consensus        16 ~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         16 KAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPS-VQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            44556778899999999999999999999987654331 0110111 257788999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccchHHH--------HHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhh
Q 015396          120 ASVVIFNTLFGLSVNFWM--------AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (407)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (407)
                      ++++++++++++++|++.        +++.|+++|++.|...+. .++++|++|+++|++..++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999864        899999999998887775 99999999999999999999988888888888776


Q ss_pred             hhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcc
Q 015396          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (407)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (407)
                      ..+.....+       . ....++||.++++.++..++.++....+||+|++...+++.++.        .++.  .++.
T Consensus       175 ~~~~~~~~~-------~-~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~--------~~~~--~~~~  236 (490)
T PRK10642        175 VLISTIVGE-------A-NFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQG--------DREG--LQDG  236 (490)
T ss_pred             HHHHHhcCH-------H-HhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhh--------cccc--cccc
Confidence            555321100       0 00035566666877666665555556788876643211100000        0000  0001


Q ss_pred             ccccccccccc-chhHH-HHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 015396          271 EATPKKSLLKN-WPLMS-SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (407)
Q Consensus       271 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~  348 (407)
                      .+.++++++++ ++.+. .....++..........+.|.|+...     +|++..+.+.......++..++.. +.+++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~~~~~-~~g~l~  310 (490)
T PRK10642        237 PKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-----LHYSEDHGVLIIIAIMIGMLFVQP-VMGLLS  310 (490)
T ss_pred             ccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            12234444442 22222 22222333344555666788777554     677777777777777777888774 889999


Q ss_pred             HHhchhHHHHHHHHHHHHHHhh-hhHHHh--hhhhhhH-hhh-----hhhHHHHHHHhhcCCCCCCC
Q 015396          349 RILGPIMVARIAGVLTIPLLTS-YPYIAM--LSGFGLA-FLL-----NCASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~-~~~-----~~~~~~~~~~~~~~p~~~rs  406 (407)
                      ||+|||+.+..+.+...+.... +.....  ....... +..     ...+.......+.+|++.|+
T Consensus       311 dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg  377 (490)
T PRK10642        311 DRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRY  377 (490)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccch
Confidence            9999999887776543322221 111111  1111111 111     11223455677899999886

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.97  E-value=2.3e-29  Score=235.37  Aligned_cols=278  Identities=17%  Similarity=0.157  Sum_probs=217.8

Q ss_pred             HHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 015396           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~  129 (407)
                      .++..++...+....|.+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   76 (399)
T TIGR00893         3 TVINYLDRANLSFAAPMLQEDLGLSAAQ------YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ   76 (399)
T ss_pred             ehHHHHHHHhhhHhHHHHHHhhCCChhh------HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH
Confidence            3456677788888999999999999999      9999999999999999999999999999999999999999999999


Q ss_pred             hccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccc
Q 015396          130 GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (407)
Q Consensus       130 ~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~  208 (407)
                      +++++++.+++.|++.|++.+...+. ..++.|++|+++|++++++.+....+|..++|.+++.+.+             
T Consensus        77 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-------------  143 (399)
T TIGR00893        77 AFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI-------------  143 (399)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH-------------
Confidence            99999999999999999998887775 9999999999999999999999999999999999999887             


Q ss_pred             cccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHH
Q 015396          209 LFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  287 (407)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (407)
                         ..+|+..+.+.++..++..+. .+..||++++.+..+++++....+....+.+.++++++.+...++.+++++++..
T Consensus       144 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (399)
T TIGR00893       144 ---HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGL  220 (399)
T ss_pred             ---hCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHH
Confidence               444555557766665554443 4455665543222111111100000000001111122233456678889999988


Q ss_pred             HHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhH
Q 015396          288 IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (407)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  355 (407)
                      .+..++..........+.|.|..+.     +|.+..+.+.+.....++..++.. +.+++.||+++|+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~  282 (399)
T TIGR00893       221 ALGQFLVNIGLGFFLTWFPTYLVQE-----RGLSILEAGFMASLPGIVGFIGMI-LGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcc
Confidence            8888888888888888888888765     788899999999999999999885 8899999999885

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.97  E-value=2.9e-28  Score=227.40  Aligned_cols=285  Identities=18%  Similarity=0.185  Sum_probs=223.7

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      +....+....+....+.....|.+|.+.+++|.++++      .+++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~   78 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASI------VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLF   78 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHH
Confidence            3444555556667778889999999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 015396          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (407)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (407)
                      +..++.+.+.++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+    
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~----  154 (385)
T TIGR00710        79 IFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV----  154 (385)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            99999999999999999999999999998887775 9999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccc
Q 015396          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (407)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (407)
                                  .++|+..+.+.++..++..+. .+..||+++++++++. ++                   ..+..++.
T Consensus       155 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~  202 (385)
T TIGR00710       155 ------------WLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQI-ST-------------------YFETFLLL  202 (385)
T ss_pred             ------------HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCH-HH-------------------HHHHHHHH
Confidence                        344555556666655554333 4456665433221100 00                   01134566


Q ss_pred             cccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHH
Q 015396          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (407)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (407)
                      +++++++...+...+..........+.|.+..+.     +|+++.+.+.+.....++..++.. +.+++.||+++|+.+.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~  276 (385)
T TIGR00710       203 LKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI-----MGVSPSVFGLLFALNIIAMIFGGF-LNGRFIKKWGAKSLLR  276 (385)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHH
Confidence            7888888776666555555555555566665533     788999999999999999998885 8899999999999888


Q ss_pred             HHHHHHHHHHhhhhH
Q 015396          359 IAGVLTIPLLTSYPY  373 (407)
Q Consensus       359 ~~~~~~~~~~~~~~~  373 (407)
                      .+..+..++..++..
T Consensus       277 ~~~~~~~~~~~~~~~  291 (385)
T TIGR00710       277 MGLILFAVSAVLLEI  291 (385)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            877776666555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.97  E-value=7e-28  Score=224.68  Aligned_cols=266  Identities=18%  Similarity=0.178  Sum_probs=204.2

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      .|+.+..+....+..........+.+|.+.+++|.++++      .++..+++.++..+++++.|+++||+|||+.+..+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~   91 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGV------AGQSVTVTAFVAMFASLFITQTIQATDRRYVVILF   91 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHH
Confidence            455555555555555555556677889999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      .++.+++.+++.++++++.+++.|+++|++.+...+. .+++.|++|+++|++++++...+.++|..++|.+++++.+  
T Consensus        92 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~--  169 (394)
T PRK10213         92 AVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE--  169 (394)
T ss_pred             HHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            9999999999999999999999999999998887775 8999999999999999999999999999999999999998  


Q ss_pred             CCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccc
Q 015396          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (407)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (407)
                           .+||         +..+++.++..++..+. ...+||+++++++                         .....+
T Consensus       170 -----~~gw---------~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~-------------------------~~~~~~  210 (394)
T PRK10213        170 -----LIGW---------RNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH-------------------------QKQNTF  210 (394)
T ss_pred             -----hcCH---------HHHHHHHHHHHHHHHHHHHHHCCCCCccccc-------------------------chhHHH
Confidence                 4444         44446666555543333 3345654321100                         001234


Q ss_pred             cccccchhHHHHHHHHHHhhccchhhhHH-hhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhH
Q 015396          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIF-SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM  355 (407)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  355 (407)
                      +.+++|.++...+..++..........+. |.|..+      +|++..+.+..+...+++..++.. +.+++.||.+++.
T Consensus       211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~iig~~-~~~~l~~r~~~~~  283 (394)
T PRK10213        211 RLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL------AGFGVDGLTLVLLSFGIASFVGTS-LSSFILKRSVKLA  283 (394)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHhccchhH
Confidence            56788888877666555555444444454 555443      788999999999999999999985 8888888855443


Q ss_pred             HHH
Q 015396          356 VAR  358 (407)
Q Consensus       356 ~~~  358 (407)
                      ...
T Consensus       284 l~~  286 (394)
T PRK10213        284 LAG  286 (394)
T ss_pred             HHH
Confidence            333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.97  E-value=3.6e-28  Score=233.82  Aligned_cols=303  Identities=16%  Similarity=0.201  Sum_probs=236.1

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      .+..+++..++..++.....+.+|.+.+++|.+.++      .+++.+.+.++..++.++.|+++||+|||++++.+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQ------VQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFA   76 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------hhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHH
Confidence            345667788888899999999999999999999998      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 015396          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (407)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  200 (407)
                      ..++.++++.+++++.+++.|+++|++.+...+. .+++.|++|+++|+++++++.....+|..++|.+++++.+     
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----  151 (485)
T TIGR00711        77 FTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE-----  151 (485)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc-----
Confidence            9999999999999999999999999998887775 9999999999999999999999999999999999999988     


Q ss_pred             CCcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCCCCCCcchhhhhh---------hhhhhchh--------
Q 015396          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSY---------DALESASA--------  262 (407)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~---------~~~~~~~~--------  262 (407)
                        ..|||+.|         ++.+...++.. +..+.+||+++...++.+......         ....+.++        
T Consensus       152 --~~~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  220 (485)
T TIGR00711       152 --NYHWRWIF---------LINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE  220 (485)
T ss_pred             --CcCceehh---------hhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence              45565555         55555544433 334455664432222111110000         00000000        


Q ss_pred             ---------------hhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHH
Q 015396          263 ---------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE  327 (407)
Q Consensus       263 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  327 (407)
                                     ..+|.+++++....++++++.++...+..++..........+.|.|+++.     +|+++.+.+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~s~~~~g~  295 (485)
T TIGR00711       221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQV-----LGYTALQAGL  295 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHH
Confidence                           00111222333345678889888888877777777777777888888765     7899999999


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhh
Q 015396          328 VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  372 (407)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (407)
                      ......++..++.. +.+++.||+++|+.+..+..+..++...+.
T Consensus       296 ~~~~~~~~~~~~~~-~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       296 HILPVGLAPMLSSP-IAGRMGDKIDPRKLVTIGLILYAVGFYWRA  339 (485)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence            99999999999885 889999999999998888877777766554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.97  E-value=1.1e-28  Score=233.30  Aligned_cols=280  Identities=16%  Similarity=0.175  Sum_probs=212.5

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      +.....++..+..++....+.+.+|.+.+++|.+..+      .|++.+.+.++..+++++.|+++||+|||+++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~   96 (434)
T PRK11663         23 HILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSD------IGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLI   96 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHH
Confidence            3444566677777777788889999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 015396          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (407)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (407)
                      +.+++.++++++++++.+++.|++.|++.|...+. .+++.|++|+++|++++++.+.+.++|..++|.+++++.+    
T Consensus        97 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~----  172 (434)
T PRK11663         97 ATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL----  172 (434)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            99999999999999999999999999988876664 8999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCCCChhHHHHHHHHHHHH-HHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccc-c-c
Q 015396          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-K-K  276 (407)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~  276 (407)
                                  .++|+..+.+.++..++. ++..+++||+|++...++..+.+. +. .+..++ ++.+...... . .
T Consensus       173 ------------~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~-~~~~~~-~~~~~~~~~~~~~~  237 (434)
T PRK11663        173 ------------HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-DA-LELAQQ-QEGAGLSRKEILTK  237 (434)
T ss_pred             ------------cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-cc-cccchh-ccccCCChhhhHHH
Confidence                        344555557666655443 334456677654322111000000 00 000000 0000000111 1 1


Q ss_pred             cccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 015396          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (407)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  351 (407)
                      ..++++.++...+..++..........++|.|+.+.     +|++..+.+...+...++..++.. +.+++.||+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~~g~~-~~g~l~dr~  306 (434)
T PRK11663        238 YVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSET-----LGVDLVTANSAVSMFELGGFIGAL-VAGWGSDKL  306 (434)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCCCHHHHHHHHHHHHHHHHHHHH-HHhhhHHHh
Confidence            256788888877777776666667777888888554     789999999999999999999985 889999998

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.97  E-value=9.8e-29  Score=229.69  Aligned_cols=313  Identities=14%  Similarity=0.100  Sum_probs=223.6

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~  125 (407)
                      ......+.........+..|.+.+++|.++++      .|++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~   81 (377)
T TIGR00890         8 GTVIMCFTSGYVYTWTLLAPPLGRYFGVGVTA------VAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLG   81 (377)
T ss_pred             HHHHHHHHhhHHhhhhhHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHH
Confidence            33333334444667788999999999999999      999999999999999999999999999999999999999999


Q ss_pred             HHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 015396          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (407)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  204 (407)
                      .+.++++++++.+++.|++.|++.+...+. ...+.|++| ++|+++.++...+.++|..+++++.+.+.+         
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------  151 (377)
T TIGR00890        82 FTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN---------  151 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh---------
Confidence            999999999999999999999998876554 778888887 679999999999999999887777777666         


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccch
Q 015396          205 SSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (407)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (407)
                             .++|+..+.+.++..++..+. .+++++++++..+++++.+                  +.....++.++++.
T Consensus       152 -------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~  206 (377)
T TIGR00890       152 -------LEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVS------------------VKDYTVWEMLRTPQ  206 (377)
T ss_pred             -------cccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccc------------------hhhhhHHHHHcCcc
Confidence                   334555557777766655443 3445543322111100000                  01113345677888


Q ss_pred             hHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHH
Q 015396          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (407)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (407)
                      ++...+..++..........+.+.|.++      +|.+..+.+...+...++..+++. ..+++.||++||+.+..+..+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g~~~~~~~~~~~  279 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYGQS------LGLSDGFLVLAVSISSIFNGGGRP-FLGALSDKIGRQKTMSIVFGI  279 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhHHHHH
Confidence            8777666665555544444455555433      678888889999999999999885 889999999999998888877


Q ss_pred             HHHHHhhhhHHHhhhhhhh---Hhhhh-----hhHHHHHHHhhcCCCCCCC
Q 015396          364 TIPLLTSYPYIAMLSGFGL---AFLLN-----CASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~~~p~~~rs  406 (407)
                      ..++...+.+.+.......   ....+     ..........+.+|++.|+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~  330 (377)
T TIGR00890       280 SAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSA  330 (377)
T ss_pred             HHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhh
Confidence            7777665544432211111   01111     1112345677888888775

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.97  E-value=1.2e-28  Score=228.08  Aligned_cols=288  Identities=16%  Similarity=0.119  Sum_probs=221.2

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~  125 (407)
                      +....++..++.....+.+|.+..+++.++.+      .+++.+++.++..+++++.|+++||+|||+++..+.++..++
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~   77 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASV------LSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVL   77 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHH
Confidence            45667778888888999999999999999988      999999999999999999999999999999999999998888


Q ss_pred             HHHhhccc-----hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 015396          126 NTLFGLSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (407)
Q Consensus       126 ~~~~~~~~-----~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (407)
                      .++..+.+     +++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+    
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  153 (365)
T TIGR00900        78 VAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA----  153 (365)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----
Confidence            88887777     9999999999999999888886 9999999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccccc
Q 015396          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (407)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (407)
                                  .++|+..+++.++..++..+..+.++++++..+++++.+++.              .++.....+.++
T Consensus       154 ------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~  207 (365)
T TIGR00900       154 ------------TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAV--------------LRDTREGIKFVL  207 (365)
T ss_pred             ------------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhH--------------HHHHHhHHHHHH
Confidence                        344555556666655554444333322211111111000000              000112345677


Q ss_pred             ccchhHHHHHHHHHHhhccchhh-hHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHH
Q 015396          280 KNWPLMSSIIVYCVFSLHDMAYS-EIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (407)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (407)
                      ++|.++...+..++......... .+.|.|..+.     +|.+..+.+......+++..++.. +.+++.||.++++.+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~  281 (365)
T TIGR00900       208 KNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKY-----LGRGSTHYGWVLAAFGLGALLGAL-LLGLLGRYFKRMALMT  281 (365)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhHHHH
Confidence            88888877777666665554444 6677776554     688899999999999999999885 7789999999999888


Q ss_pred             HHHHHHHHHHhhhhHHH
Q 015396          359 IAGVLTIPLLTSYPYIA  375 (407)
Q Consensus       359 ~~~~~~~~~~~~~~~~~  375 (407)
                      .+..+..+.+....+..
T Consensus       282 ~~~~~~~~~~~~~~~~~  298 (365)
T TIGR00900       282 GAIFVIGLAILVVGLTP  298 (365)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            87766666666555443

>PRK10133 L-fucose transporter; Provisional

Probab=99.97  E-value=6.2e-28  Score=227.46  Aligned_cols=302  Identities=15%  Similarity=0.140  Sum_probs=225.0

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      ....+..+....+...+......+..|.+++++|.++.+      .|+..+.+.+++.+++++.|+++||+|||+++..+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~------~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g   97 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG   97 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            344556677777888888899999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh---hccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          119 TASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       119 ~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      .++..++.+++   ..+++++.++++|+++|++.|...+. ++++.|+.|+++|.+.+++.+....+|..++|.+++.+.
T Consensus        98 ~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133         98 LFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999875   46889999999999999999888775 888899877777777899999999999999999988765


Q ss_pred             CCCCC-----------CCCcccccccccCCCChhHHHHHH-HHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhch
Q 015396          195 QPAEK-----------YPNLFSSESLFGKFPYFLPCLCIS-LFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESAS  261 (407)
Q Consensus       195 ~~~~~-----------~~~~~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  261 (407)
                      ....+           .....+||..+ -.+|+.+++... +..++.++. ...+||.+.+++  ++  +.         
T Consensus       178 ~~~~~~~~~~~~~~l~~~~~~~w~~~~-~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~--~~--~~---------  243 (438)
T PRK10133        178 LSNVPHQSQDVLDKMTPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH--SD--AK---------  243 (438)
T ss_pred             hcCCcccchhhhhccChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--cc--cc---------
Confidence            21100           00012566554 456787776433 333232222 233444221100  00  00         


Q ss_pred             hhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhc-cCCCccCccccchhhHHHHHHHHHHHHHHHH
Q 015396          262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA-NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQ  340 (407)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~  340 (407)
                            +.+.....++++++|.++...+..++..........+.+.|+ ++.     +|+++.+++..+....++..+++
T Consensus       244 ------~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-----~g~s~~~ag~~~~~~~~~~~vG~  312 (438)
T PRK10133        244 ------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIGR  312 (438)
T ss_pred             ------ccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCHHHHHHHHHHHHHHHHHHH
Confidence                  000112345678889888777766666666666666777664 333     79999999999999999999998


Q ss_pred             HhHHHHHHHHhchhHHHHHHHHHHHHHHhhhh
Q 015396          341 LSLYPFLERILGPIMVARIAGVLTIPLLTSYP  372 (407)
Q Consensus       341 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (407)
                      . .++++.||+++|+++..+..+..+.+++..
T Consensus       313 ~-~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~  343 (438)
T PRK10133        313 F-TGTWLISRFAPHKVLAAYALIAMALCLISA  343 (438)
T ss_pred             H-HHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            5 899999999999998888777665555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.97  E-value=2.5e-29  Score=217.69  Aligned_cols=335  Identities=37%  Similarity=0.592  Sum_probs=235.2

Q ss_pred             hhchhhhHHHHHHhhcccccccc--hhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccch
Q 015396           57 ISSLFPFLYFMIKDFQIAKREED--IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (407)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~--~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~  134 (407)
                      ...+.++.....++|+.-..+.+  ...+.|.+.+.+++.+.+.++.+|.++||+|||+++++|++..++...+.+.+.|
T Consensus        41 ~~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~  120 (451)
T KOG2615|consen   41 VSSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN  120 (451)
T ss_pred             ccchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666677777788877655555  7888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCC
Q 015396          135 FWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (407)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (407)
                      +..++++|++.|+..|...++.++++|.+++|+|+.+++.++...++|.++||.+||++.+.        .  ..++++.
T Consensus       121 F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f--------~--~~~g~~p  190 (451)
T KOG2615|consen  121 FAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQF--------S--SISGSYP  190 (451)
T ss_pred             HHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhh--------H--hhhccCc
Confidence            97788889999999999999999999999999999999999999999999999999999871        1  1122455


Q ss_pred             ChhHHHHHHHHHHH-HHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHH
Q 015396          215 YFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (407)
Q Consensus       215 ~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (407)
                      +..|.++..+.... .....+++||+-+.+++++++.     +.++..++.++..+.........++|++....+..+..
T Consensus       191 ~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i  265 (451)
T KOG2615|consen  191 FALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHS-----TLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRI  265 (451)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCccccchhhccccc-----chhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHH
Confidence            56655666665555 4556778999976554441111     11111111111111112223445667766665666666


Q ss_pred             HhhccchhhhHHhhhccCCCcc--CccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhch-hHHHHHHHHHHHHHHhh
Q 015396          294 FSLHDMAYSEIFSLWANSPKKL--GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVLTIPLLTS  370 (407)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~--~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~  370 (407)
                      .....+.+...++.|.......  +++|+++.+.|.+++..++.+.+.+..+.+++.+..+. +..+..+..++...+++
T Consensus       266 ~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~ll  345 (451)
T KOG2615|consen  266 FGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLL  345 (451)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHH
Confidence            6666667777777777666554  66999999999999999999999887666666444433 33344444444444444


Q ss_pred             hhHHHhhhhh------hhHhhhhhhHHHHHHHhhcCCCCCCC
Q 015396          371 YPYIAMLSGF------GLAFLLNCASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       371 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~p~~~rs  406 (407)
                      +.........      ..+...........+.....|++.|+
T Consensus       346 ls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG  387 (451)
T KOG2615|consen  346 LSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRG  387 (451)
T ss_pred             HhccccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccch
Confidence            3332221111      11122222234456677788888876

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.96  E-value=9.9e-28  Score=223.20  Aligned_cols=279  Identities=17%  Similarity=0.249  Sum_probs=216.7

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      +.++.+....+..........+.+|.+.+++|.+.++      .|+..+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   76 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPA------AGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVA   76 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHH------HhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence            3455667777888888889999999999999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 015396          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (407)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (407)
                      +.+++.+++++++|++.+++.|++.|++.+...+. ..++.|++|+++|++++++...+..+|..++|++++++.+    
T Consensus        77 ~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~----  152 (382)
T PRK10091         77 LCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ----  152 (382)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh----
Confidence            99999999999999999999999999998887775 8889999999999999999999999999999999999987    


Q ss_pred             CCCcccccccccCCCChhHHHHHHHHHHHHHH-HHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccc
Q 015396          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (407)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (407)
                                  .++||..+.+.++..++..+ ..+++||.+++.+  .+ .+                      ...+.
T Consensus       153 ------------~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~--~~-~~----------------------~~~~~  195 (382)
T PRK10091        153 ------------EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAK--GG-LR----------------------EQFHF  195 (382)
T ss_pred             ------------hccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccc--cC-HH----------------------HHHHH
Confidence                        33455555776665554433 3455676532110  00 00                      01123


Q ss_pred             cccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHH
Q 015396          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (407)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (407)
                      ++++..+......++..........+.+.+..+.     +|+++.+.+.+.+..+++..+++. +.+++.||+++++.+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~~r~~~~~~~~  269 (382)
T PRK10091        196 LRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI-----SGFSETSMTFIMMLVGLGMVLGNL-LSGRLSGRYSPLRIAA  269 (382)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHhH-HHheeccccCchhHHH
Confidence            5566666554444433333333333444444433     688999999999999999999985 8899999999999988


Q ss_pred             HHHHHHHHHHhhhh
Q 015396          359 IAGVLTIPLLTSYP  372 (407)
Q Consensus       359 ~~~~~~~~~~~~~~  372 (407)
                      .+..+.+++.+.+.
T Consensus       270 ~~~~~~~i~~~~~~  283 (382)
T PRK10091        270 VTDFIIVLALLMLF  283 (382)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777776665443

>PRK10504 putative transporter; Provisional

Probab=99.96  E-value=2.9e-27  Score=226.46  Aligned_cols=305  Identities=15%  Similarity=0.112  Sum_probs=229.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      .+.++.++...++..++...+.+.+|.+.+++|.++.+      .+++.+.+.++..++.++.|+++||+|||++++.+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~   82 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLH------MHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAI   82 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence            34566777888888888899999999999999999998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 015396          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (407)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (407)
                      ++.+++.+++.++++++.+++.|+++|++.+...+. .+++.|++|+++|+++.++.....++|..++|.+++.+.+   
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~---  159 (471)
T PRK10504         83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE---  159 (471)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---
Confidence            999999988889999999999999999998887775 8899999999999999999999999999999999999998   


Q ss_pred             CCCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhh---------hhhhchh------
Q 015396          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYD---------ALESASA------  262 (407)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~---------~~~~~~~------  262 (407)
                          ..|||         ..+.+......+..+. ....|+.+.... +.+.......         ..+..+.      
T Consensus       160 ----~~gw~---------~~f~~~~~~~~l~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (471)
T PRK10504        160 ----YASWH---------WIFLINIPVGIIGAIATLMLMPNYTMQTR-RFDLSGFLLLAVGMATLTLALDGSKGLGLSPL  225 (471)
T ss_pred             ----hccHH---------HHHHHHHHHHHHHHHHHHHhCCCccccCC-CCChHHHHHHHHHHHHHHHHHhcCCcCCcchH
Confidence                34444         4446655544443333 334444332211 1111100000         0000000      


Q ss_pred             ----------------hhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHH
Q 015396          263 ----------------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVG  326 (407)
Q Consensus       263 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  326 (407)
                                      ..+|.+.+++....++++|++++......++..........+.|+|.+..     +|.++.+.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g  300 (471)
T PRK10504        226 AIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG-----LGFSPFHAG  300 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHH
Confidence                            00111112223334578999998887777777766666666778777654     788999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhH
Q 015396          327 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  373 (407)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (407)
                      +......++..++.. +.+++.||+++|+.+..+..+..+...++.+
T Consensus       301 ~~~~~~~~~~~~~~~-~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~  346 (471)
T PRK10504        301 LMMIPMVLGSMGMKR-IVVQVVNRFGYRRVLVATTLGLALVSLLFML  346 (471)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHHHHHHh
Confidence            998888888877764 7889999999999998888877766655544

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.96  E-value=2.4e-27  Score=219.69  Aligned_cols=290  Identities=12%  Similarity=0.078  Sum_probs=214.9

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhHHHHHH-hhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHH
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (407)
                      ..++.+...++..++.+....+..|..+.+.+ ++|+|++|      .+++.+++.+++.++.++.|++.||+|.|+++.
T Consensus        31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q------~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~  104 (462)
T PRK15034         31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQ------LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTV  104 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            44577777888888888899999999998876 89999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcc-----chHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhh
Q 015396          117 MGTASVVIFNTLFGLS-----VNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (407)
                      ++.++.++.++..+++     ++++.+++.|++.|++.+.+.+....+++++|+++||+++|+.....++|..+++++..
T Consensus       105 ~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        105 FSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999988876     89999999999999985545456999999999999999999997667777766655554


Q ss_pred             hhcCCCCCCCCccccccccc----CCCChhHHHHHHHHHHHHHHHHh-ccccCCCCCCCCcchhhhhhhhhhhchhhhhh
Q 015396          192 FLAQPAEKYPNLFSSESLFG----KFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKE  266 (407)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (407)
                      .+....  .-..+||+....    ..+|+...++..+..++..+..+ ++++.++ .  +.                   
T Consensus       185 ~~i~~~--l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~-~--~~-------------------  240 (462)
T PRK15034        185 LVIFVP--VFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS-S--RA-------------------  240 (462)
T ss_pred             HHHHHH--HHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-c--cc-------------------
Confidence            433100  000345544331    23366666666666555444433 3333221 1  00                   


Q ss_pred             hhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 015396          267 EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF  346 (407)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~  346 (407)
                          ..+..++.+|+|+.|...+.+++......++..++|.|..+.     +  +............+...+.+ +++|+
T Consensus       241 ----~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~-----~--~~~~~l~~~~l~~l~~~l~r-plgG~  308 (462)
T PRK15034        241 ----SIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ-----F--PDVNILRLAFFGPFIGAIAR-SVGGA  308 (462)
T ss_pred             ----CHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----c--ChHHHHHHHHHHHHHHHHHH-HhhHH
Confidence                011345688999999999999998888888888899887653     2  22222222333455666666 58999


Q ss_pred             HHHHhchhHHHHHHHHHHHHHHh
Q 015396          347 LERILGPIMVARIAGVLTIPLLT  369 (407)
Q Consensus       347 l~~~~~~~~~~~~~~~~~~~~~~  369 (407)
                      ++||+|+++++.++.+...+...
T Consensus       309 LADRiG~~~vl~~~~i~~~i~~~  331 (462)
T PRK15034        309 ISDKFGGVRVTLINFIFMAIFSA  331 (462)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHH
Confidence            99999999999988876666553

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.96  E-value=1.2e-27  Score=220.45  Aligned_cols=286  Identities=25%  Similarity=0.415  Sum_probs=217.4

Q ss_pred             HHHHHHHhhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~  124 (407)
                      +++..++..+......+.+| .+.+++|.++.+      .+++.+++.++..+++++.|+++||+|||+++..+.++.++
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~   74 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYLAEELGLSPSQ------IGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFAL   74 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHC------HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhh
Confidence            35667788888889999999 899999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 015396          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (407)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  203 (407)
                      +.++..++++.+.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++++.+       .
T Consensus        75 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-------~  147 (352)
T PF07690_consen   75 GSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS-------Y  147 (352)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------H
T ss_pred             HHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh-------c
Confidence            9666666688889999999999998888776 9999999999999999999999999999999999999997       4


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccc-cccccccc
Q 015396          204 FSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT-PKKSLLKN  281 (407)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  281 (407)
                      +|||+.         +++.++..++..+. ..++++++++++.++++++.             +++++... .++.++++
T Consensus       148 ~~~~~~---------~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~  205 (352)
T PF07690_consen  148 FGWRWA---------FLISAILSLIAAILFILFLPEPPPPRERESPKESE-------------SKKPKPLKPGFKSLFKN  205 (352)
T ss_dssp             CHHCCH---------HHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------------HHHCCCH-CTHHHHH
T ss_pred             cccccc---------cccccchhhhhhhhHhhhhhhcccccccccccccc-------------ccccccccccccccccc
Confidence            445444         47777776665543 34555554443332221110             00011122 35667777


Q ss_pred             chhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccc-hhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHH
Q 015396          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS-TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (407)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (407)
                      +.++......++..+.......+.|.|..+.     +|++ ..+.+......++...++.. +.+++.||+++++.....
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~  279 (352)
T PF07690_consen  206 PVLWILLIAFFLFFFVFSGFSFFLPLYLQEV-----LGFSGPSQAGLLFSIFGIVGIIGSL-LAGRLSDRFGRRRRLLIA  279 (352)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHCCTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCHHHHHHH
T ss_pred             chhhhhhhhhhHHHHHHHHhhcccchhhhhc-----cCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCcHHHHHHH
Confidence            7776555555555556666777888875554     7888 78999999999999999875 888888999987776666


Q ss_pred             HHHHHHHHhhhh
Q 015396          361 GVLTIPLLTSYP  372 (407)
Q Consensus       361 ~~~~~~~~~~~~  372 (407)
                      .....+....+.
T Consensus       280 ~~~~~~~~~~~~  291 (352)
T PF07690_consen  280 ILLLILGALGLL  291 (352)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            655555544443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK09952 shikimate transporter; Provisional

Probab=99.96  E-value=3.4e-27  Score=223.14  Aligned_cols=334  Identities=16%  Similarity=0.129  Sum_probs=214.7

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHHH-HHHhh--cccccccchhhH-HHHHHHHHHHHHHHhhhhhhhcccccCChHHH
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDF--QIAKREEDIGSY-AGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~s~~~~~~~~~-~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~  115 (407)
                      ++......+..++++++...+....|. +.+++  +.++.+   +.. .....++..++..+++++.|+++||+|||+++
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l   97 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM---GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRML   97 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHH
Confidence            344556777888999999988888774 45555  555542   111 11122455677889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccchHH--------HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHH
Q 015396          116 IMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIG  186 (407)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  186 (407)
                      ..+.+++++++++++++++++        .++++|+++|++.|...+. ..++.|++|+++|++..+..+.+..+|..++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~  177 (438)
T PRK09952         98 MLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLS  177 (438)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999987        5889999999999887775 8999999999999999999999999999998


Q ss_pred             HHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhh
Q 015396          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKE  266 (407)
Q Consensus       187 ~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (407)
                      +.+...+.....+.        .+..++||.++++.++..++........||++++.+.+++.++               
T Consensus       178 ~~~~~~l~~~~~~~--------~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~---------------  234 (438)
T PRK09952        178 TGLVSLISMMTTDE--------QFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA---------------  234 (438)
T ss_pred             HHHHHHHHHhCCHH--------HhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc---------------
Confidence            88777765311100        0114567777787777655544444455666543211100000               


Q ss_pred             hhcccccccccccccchhHHHHH-HHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHH
Q 015396          267 EEGREATPKKSLLKNWPLMSSII-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (407)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~  345 (407)
                      .+ +.....+.++++++.+.... ..++..........+.|.|..+.     +|++...........++...++. ++.+
T Consensus       235 ~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-----~g~s~~~~~~~~~~~g~~~~i~~-~~~g  307 (438)
T PRK09952        235 AK-KRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQN-----LGLPRELFLNIGLLVGGLSCLTI-PCFA  307 (438)
T ss_pred             cc-ccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            00 00011123456666555433 33333444445556777776554     67777655555555566666666 4789


Q ss_pred             HHHHHhchhHHHHHHHHHHHHHHhhhhHHH-hhhhhhh---Hhhh-h-----hhHHHHHHHhhcCCCCCCC
Q 015396          346 FLERILGPIMVARIAGVLTIPLLTSYPYIA-MLSGFGL---AFLL-N-----CASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       346 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~-~-----~~~~~~~~~~~~~p~~~rs  406 (407)
                      ++.||++||+.+..+.++..+....+.... .......   ...+ +     ..+.......|.+|.+.|.
T Consensus       308 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~  378 (438)
T PRK09952        308 WLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRY  378 (438)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhH
Confidence            999999999988877665544433221111 1011111   1111 0     1223456778999998874

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.96  E-value=6.4e-27  Score=218.80  Aligned_cols=282  Identities=20%  Similarity=0.222  Sum_probs=215.2

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~  124 (407)
                      ......+....+.+.+.+.+|.+.+++|.++.+      .++..+.+.++..+++++.|+++||+|||+.+..+.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i   80 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQ------LHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFII   80 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHH
Confidence            344556666677778889999999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 015396          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (407)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  203 (407)
                      +.+++..+++++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~--------  152 (392)
T PRK10473         81 ASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML--------  152 (392)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence            9999999999999999999999998886664 9999999999999999999999999999999999999877        


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccc
Q 015396          204 FSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (407)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (407)
                              ..+|+..+.+.++..++.. +..+.+||+++..++++.  +                   ..+..++.++++
T Consensus       153 --------~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~~~~~~~~~  203 (392)
T PRK10473        153 --------KFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAAS--S-------------------KPRENSESLLNR  203 (392)
T ss_pred             --------CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCcc--c-------------------hHHHHHHHHhCH
Confidence                    3345555566666555433 334556765432211100  0                   001223456677


Q ss_pred             hhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHH
Q 015396          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGV  362 (407)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  362 (407)
                      +++...+...+.......+..+.|.+..+.     +|++..+.+.+....+++.+++.. ..+++.||+++|+.+..+..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~i~~~~-~~~~l~~r~g~~~~~~~~~~  277 (392)
T PRK10473        204 FFLSRLVITTLSVTVILTFVNTSPVLLMEQ-----MGFSRGEYAIIMALTAGVSMTVSF-STPFALGIFKPRTLMLTSQV  277 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHHH
Confidence            766554444443333334444445554433     788999999999999999999985 78999999999999988888


Q ss_pred             HHHHHHhhhhHHH
Q 015396          363 LTIPLLTSYPYIA  375 (407)
Q Consensus       363 ~~~~~~~~~~~~~  375 (407)
                      +..++...+....
T Consensus       278 ~~~~~~~~~~~~~  290 (392)
T PRK10473        278 LFLAAGITLALSP  290 (392)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666555443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=6e-27  Score=221.54  Aligned_cols=286  Identities=16%  Similarity=0.116  Sum_probs=195.8

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHH-HHH-----HHHHHHHhhhhhhhcccccCCh
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV-GSS-----FMFGRALTSVFWGLVADRYGRK  112 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~-~~~-----~~~~~~~~~~~~G~l~dr~Grr  112 (407)
                      +++....+++..++++++...+.+..|.+.++++.++.+      .+.. .+.     ..++..+++++.|+++||+|||
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr   86 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNE------FASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRR   86 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc------hHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchH
Confidence            345566788899999999999999999999999998877      4433 222     2333357889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccchHH--------HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHH
Q 015396          113 PVIIMGTASVVIFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL  183 (407)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~  183 (407)
                      +.++.+.++..++.++++++++++        .+++.|+++|++.+...+. ..+++|++|+++|++++++...+.++|.
T Consensus        87 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~  166 (434)
T PRK15075         87 KGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAV  166 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHH
Confidence            999999999999999999999877        4689999999998887774 8999999999999999999999888888


Q ss_pred             HHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhh
Q 015396          184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAE  263 (407)
Q Consensus       184 ~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  263 (407)
                      .+++.+++.+.....+.       .. ..++||.++++..+...+........||+++.       .+..          
T Consensus       167 ~~g~~~g~~l~~~~~~~-------~~-~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~-------~~~~----------  221 (434)
T PRK15075        167 VFAALLGYLLNQWLSPA-------QM-AEWGWRIPFLIGCLIVPFIFLIRRSLEETEEF-------LARK----------  221 (434)
T ss_pred             HHHHHHHHHHHHhCCHH-------HH-hccchHHHHHHHHHHHHHHHHHHHhcCCCHHH-------HHhh----------
Confidence            88888888764311000       00 03455655565443322222111122221100       0000          


Q ss_pred             hhhhhcccccccccccccchhHHH-HHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHh
Q 015396          264 VKEEEGREATPKKSLLKNWPLMSS-IIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLS  342 (407)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~  342 (407)
                         .+.+.....+...++++.+.. ....++..........+.|.|+++.     +|++..+.++......++.+++.. 
T Consensus       222 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-  292 (434)
T PRK15075        222 ---HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-----LHLSAADSLLVTLCVGVSNFIWLP-  292 (434)
T ss_pred             ---hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-
Confidence               000001112223344443332 2223333334445566778777664     688888888888888888888875 


Q ss_pred             HHHHHHHHhchhHHHHHHHHHH
Q 015396          343 LYPFLERILGPIMVARIAGVLT  364 (407)
Q Consensus       343 ~~~~l~~~~~~~~~~~~~~~~~  364 (407)
                      +.+++.||++||+....+..+.
T Consensus       293 ~~g~l~Dr~g~r~~~~~~~~~~  314 (434)
T PRK15075        293 IGGALSDRIGRRPVLIAFTVLA  314 (434)
T ss_pred             HHHHHHHHhcchHHHHHHHHHH
Confidence            8899999999999877765443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.96  E-value=2.9e-28  Score=226.70  Aligned_cols=275  Identities=16%  Similarity=0.158  Sum_probs=210.2

Q ss_pred             HHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 015396           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (407)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~  128 (407)
                      ..+..+.....+.+..|.+.+++|.+..+      .+++.+++.++..+++++.|+++||+|||+++..+.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   76 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTD------LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLF   76 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhH------HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHH
Confidence            45567778888899999999999999999      999999999999999999999999999999999999999999999


Q ss_pred             hhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHH-HhhhhhcCCCCCCCCcccc
Q 015396          129 FGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP-ALGGFLAQPAEKYPNLFSS  206 (407)
Q Consensus       129 ~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~gw  206 (407)
                      ++++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++| .+++.+.+           
T Consensus        77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------  145 (379)
T TIGR00881        77 FGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE-----------  145 (379)
T ss_pred             HHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh-----------
Confidence            999999999999999999998887775 89999999999999999999999999999999 56666665           


Q ss_pred             cccccCCCChhHHHHHHHHHHH-HHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhH
Q 015396          207 ESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLM  285 (407)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (407)
                           ..+|+..+.+.++..++ .++..++.||+++..+.++++++.. ++.++.+++.+++.+..+...+.+++++.++
T Consensus       146 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (379)
T TIGR00881       146 -----LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPN-EEPDGDAEKKEEELTKKQIFLQYVLLNKVLW  219 (379)
T ss_pred             -----cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcc-cccccccccccccccchHHHHHHHHhcchHH
Confidence                 33445445666655544 3444556666654332211111100 0000000111111111222345678889888


Q ss_pred             HHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 015396          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (407)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (407)
                      ...+..++..........+.|.|..+.     +|++..+.+.......++..++.. +.+++.||..
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~~  280 (379)
T TIGR00881       220 YISLGYVFVYVVRTGILDWSPLYLTQE-----KGFSKEKASWAFTLYELGGLVGTL-LAGWLSDKLF  280 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHcchhHH-HHHHHHHHHc
Confidence            888888777777777778888887664     788999999999999999999985 8889999753

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.96  E-value=4.6e-27  Score=219.31  Aligned_cols=263  Identities=13%  Similarity=0.065  Sum_probs=206.0

Q ss_pred             hhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHH
Q 015396           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFW  136 (407)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~  136 (407)
                      .....+.+|.+.+++|+|.++      .|++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+.+++++|++
T Consensus        25 ~~~~~~~lp~i~~~~~~s~~~------~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~   98 (393)
T PRK09705         25 LTSVGPLLPQLRQASGMSFSV------AALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSA   98 (393)
T ss_pred             hhccchhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchH
Confidence            367789999999999999999      99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCC
Q 015396          137 MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY  215 (407)
Q Consensus       137 ~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~  215 (407)
                      .+++.|+++|++.+...+. ..++.|++| ++|+++++.+..+..+|..+++.+++++.+.      ..+||..+     
T Consensus        99 ~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~------~~~w~~~~-----  166 (393)
T PRK09705         99 LLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQH------SETWYQTL-----  166 (393)
T ss_pred             HHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHH-----
Confidence            9999999999998887775 888999987 7899999999999999999999999998871      12454433     


Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHh
Q 015396          216 FLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFS  295 (407)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (407)
                          ...++..++.++..+...+..++  ++++                      ++...++.+++++.+...+.+++..
T Consensus       167 ----~~~~~~~~~~~~~~~~~~~~~~~--~~~~----------------------~~~~~~~~l~~~~~~~l~~~~~~~~  218 (393)
T PRK09705        167 ----AWWALPAVVALFAWWWQSAREVA--SSHK----------------------TTTTPVRVVFTPRAWTLGVYFGLIN  218 (393)
T ss_pred             ----HHHHHHHHHHHHHHHHHhcCCCc--cccC----------------------CCcCCcccccCHhHHHHHHHHHHHH
Confidence                44444333333322222211111  0000                      0012234556777777766666666


Q ss_pred             hccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhh
Q 015396          296 LHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  372 (407)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (407)
                      ........+.|.|+.+      +|++..+++...+..+++.++++. +.+++.||.++++....+..+..++...+.
T Consensus       219 ~~~~~~~~~lp~~l~~------~g~s~~~ag~~~~~~~i~~i~g~~-~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~  288 (393)
T PRK09705        219 GGYASLIAWLPAFYIE------IGASAQYSGSLLALMTLGQAAGAL-LMPAMARHQDRRKLLMLALVLQLVGFCGFI  288 (393)
T ss_pred             HHHHHHHHHHHHHHHH------cCCChhhhhHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            6666777788888754      688999999999999999999985 889999999999988888777666665443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.96  E-value=3e-27  Score=225.52  Aligned_cols=282  Identities=12%  Similarity=0.109  Sum_probs=205.3

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      ++.+...+...+..........+..|.+.+++|++..+      .+++.+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~  108 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSD------IGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLL  108 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            44555566667777777778889999999999999998      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 015396          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (407)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (407)
                      ++++++.++++++++++.+++.|++.|++.+...+...+++|++|+++|++++++.+...++|..+++.+.+.+......
T Consensus       109 ~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~  188 (476)
T PLN00028        109 MLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKD  188 (476)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998776555667889999999999999999887777887777666554321000


Q ss_pred             --CCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccc
Q 015396          200 --YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (407)
Q Consensus       200 --~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (407)
                        ....         .+||..+++.+++.++..+..++++++++....+  +.++       ..   +.++.+....+++
T Consensus       189 ~~~~~~---------~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~--~~~~-------~~---~~~~~~~~~~~~~  247 (476)
T PLN00028        189 AGAPSF---------TAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR--ELKK-------SG---TMPKDSFSKVLRY  247 (476)
T ss_pred             cCCcch---------hhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh--hHHh-------cC---ccccccHHHHHHH
Confidence              0001         2455555777776665554444444332211100  0000       00   0000001123455


Q ss_pred             ccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchh
Q 015396          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (407)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (407)
                      .++++++|...+.+++.......+..+.|.|+.+.     +|++..+++.+.+..+++..+++. ++++++||+++|
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~a~~~~~~~~~~~~ig~~-~~G~lsDr~~~r  318 (476)
T PLN00028        248 GVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR-----FGLSLETAGAIAASFGLMNLFARP-AGGYLSDVAARR  318 (476)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHh
Confidence            67788888777766665555556666777776554     789999999999999999999985 899999999865

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.96  E-value=2.7e-27  Score=227.29  Aligned_cols=345  Identities=15%  Similarity=0.064  Sum_probs=221.8

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHHHHHHhh--------cccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCC
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDF--------QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR  111 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Gr  111 (407)
                      .+..+...+..+..+++...+.+..|.+.+++        +.++.+      .+++.+++.++..++++++|+++||+||
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~s~~~ig~~~~~~~~G~l~dr~Gr   84 (479)
T PRK10077         11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSL------LGFCVASALIGCIIGGALGGYCSNRFGR   84 (479)
T ss_pred             HHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44455666778888889999999999998887        667777      9999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhcc------------chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHH
Q 015396          112 KPVIIMGTASVVIFNTLFGLS------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTA  178 (407)
Q Consensus       112 r~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~  178 (407)
                      |++++++.++..++.+.++++            ++++.+++.|+++|++.|...+. .++++|++|+++|++++++.+.+
T Consensus        85 r~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~  164 (479)
T PRK10077         85 RDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFA  164 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHH
Confidence            999999999998888777653            23567889999999999887775 99999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhh--hhh
Q 015396          179 WGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDA  256 (407)
Q Consensus       179 ~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~  256 (407)
                      ..+|..+++.+++.+.......       . ...++||+++++.++..++..+..+++||+|++...+++.++..  .++
T Consensus       165 ~~~G~~~~~~~~~~~~~~~~~~-------~-~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~  236 (479)
T PRK10077        165 IIFGQLVVYFVNYFIARSGDAS-------W-LNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRK  236 (479)
T ss_pred             HHHHHHHHHHHHHHHhccCccc-------c-cccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHH
Confidence            9999999998887765421100       0 01345666668777777766666778899876532221111110  000


Q ss_pred             hhhchh------hhhhhhcccccccccccccchhHHHHHHHHHHhhc----cchhhhHHhhhccCCCccCccccchhhHH
Q 015396          257 LESASA------EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLH----DMAYSEIFSLWANSPKKLGGLNYSTQMVG  326 (407)
Q Consensus       257 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~s~~~~~  326 (407)
                      .....+      +..+..+.+....+..+.- .............+.    ......+.|.+...      .|++....+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~------~g~~~~~~~  309 (479)
T PRK10077        237 IMGNTLATQALQEIKHSLDHGRKTGGKLLMF-GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT------LGASTDIAL  309 (479)
T ss_pred             HcCChhHHHHHHHHHHHHHHhhhhhhhhcch-hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH------cCCCCchHH
Confidence            000000      0000000000000111110 000111110111111    11111223433332      677776667


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHHhh--hhhhh--Hhhhh-------hhHHHHHH
Q 015396          327 EVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML--SGFGL--AFLLN-------CASVVKNL  395 (407)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~-------~~~~~~~~  395 (407)
                      ......++...++.. +.+++.||++||+.+..+..+..++.+.+......  .....  ...+.       ........
T Consensus       310 ~~~~~~~~~~~i~~~-~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (479)
T PRK10077        310 LQTIIVGVINLTFTV-LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVL  388 (479)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHH
Confidence            777777888888874 88999999999999999888888777665433211  11111  11111       11234567


Q ss_pred             HhhcCCCCCCC
Q 015396          396 LSSSGPGSKRS  406 (407)
Q Consensus       396 ~~~~~p~~~rs  406 (407)
                      .+|.+|++.|+
T Consensus       389 ~~e~~p~~~r~  399 (479)
T PRK10077        389 LSEIFPNAIRG  399 (479)
T ss_pred             hHhhCChhHHH
Confidence            88999988775

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.96  E-value=4.8e-27  Score=220.33  Aligned_cols=264  Identities=14%  Similarity=0.180  Sum_probs=209.1

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~  124 (407)
                      .+.+..+...+...++.|.+|.+.+++|.+..+      .++..+++.+++.+++++.|+++||+|||++++.+.+++++
T Consensus        20 ~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~   93 (413)
T PRK15403         20 ALILYDFAAYLTTDLIQPGIINVVRDFNADVSL------APASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTL   93 (413)
T ss_pred             HHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHH
Confidence            345566667778899999999999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 015396          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (407)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  203 (407)
                      +.+++.++++++.++++|+++|++.+...+. ..++.|++|+++|++++++......+|..+||.+++.+.+       .
T Consensus        94 ~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~-------~  166 (413)
T PRK15403         94 ACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH-------F  166 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h
Confidence            9999999999999999999999988765554 7889999999999999999999999999999999999987       3


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccc
Q 015396          204 FSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNW  282 (407)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (407)
                      .         +|+..+++.++..++..+. .+++||+++.++++.+ .+                  ...+.++++++||
T Consensus       167 ~---------gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~-~~------------------~~~~~~~~ll~~~  218 (413)
T PRK15403        167 V---------HWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFS-AK------------------SVLRDFRNVFRNR  218 (413)
T ss_pred             c---------CHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCC-hH------------------HHHHHHHHHHcCH
Confidence            3         4555557777766665443 4567876542111100 00                  0112456788999


Q ss_pred             hhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchh
Q 015396          283 PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (407)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (407)
                      .++...+...+.......+....|.++.+.     +|+++.+.++.......+..++......++.|+.++|
T Consensus       219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~  285 (413)
T PRK15403        219 LFLTGAATLSLSYIPMMSWVAVSPVILIDA-----GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR  285 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Confidence            999888877777766667777778777665     6899999999888777787777654444454544444

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1e-27  Score=221.02  Aligned_cols=324  Identities=22%  Similarity=0.237  Sum_probs=231.2

Q ss_pred             HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHH
Q 015396           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL---SVNFWMAVLTRFL  144 (407)
Q Consensus        68 ~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l  144 (407)
                      .+++|.+.++.+.....+.+.+++.+|.++|++..|+++||+|||..++++.++..++.+++.+   .++++.++++|++
T Consensus        46 ~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i  125 (485)
T KOG0569|consen   46 IERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLI  125 (485)
T ss_pred             HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3556766666667777999999999999999999999999999999999998888888776665   5789999999999


Q ss_pred             HhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHH
Q 015396          145 LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCIS  223 (407)
Q Consensus       145 ~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  223 (407)
                      .|+..|..... ..++.|..|.+.||....+.+.+..+|..++..++.--.         +|-     ...|...+....
T Consensus       126 ~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i---------lGt-----~~~W~~l~~~~~  191 (485)
T KOG0569|consen  126 VGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSL---------LGT-----EDLWPYLLAFPL  191 (485)
T ss_pred             HHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHh---------cCC-----CcchHHHHHHHH
Confidence            99999997775 999999999999999999999999999999966653322         111     334666668888


Q ss_pred             HHHHHHHHHHhccccCCCCCCC-Ccchhhhhh--hhhhhc----------hhhhhhh--hcccccccccccccchhHHHH
Q 015396          224 LFAFGVTIAAFWLPETLHRHND-DDDSCDVSY--DALESA----------SAEVKEE--EGREATPKKSLLKNWPLMSSI  288 (407)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~--~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  288 (407)
                      +++++.++.+.++||+|++.-. +++++++.+  +.+...          .++.+++  .+++..+.+++++++..+...
T Consensus       192 i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~  271 (485)
T KOG0569|consen  192 IPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPL  271 (485)
T ss_pred             HHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHH
Confidence            8888888889999999998654 333333321  111110          1111111  112455788999998887653


Q ss_pred             HHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHH
Q 015396          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  368 (407)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  368 (407)
                      ...+.....+ .+....+.+.++.....+.|++..++.+.....++..++.++ ++.++.||.|||++++.+..++.+..
T Consensus       272 ~i~~~v~~~q-q~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~-~~~~lid~~gRRpLll~~~~~~~~~~  349 (485)
T KOG0569|consen  272 LIGIVVSFAQ-QFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTL-VSPFLIDRLGRRPLLLISLSLMAVAL  349 (485)
T ss_pred             HHHHHHHHHH-HhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            3333322221 111122222222333344789999999999999999999985 99999999999999999998888777


Q ss_pred             hhhhHHHhhhh----------------hhhHhhhhhhHHHHHHHhhcCCCCCCCC
Q 015396          369 TSYPYIAMLSG----------------FGLAFLLNCASVVKNLLSSSGPGSKRSC  407 (407)
Q Consensus       369 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~p~~~rs~  407 (407)
                      +++........                ......++++++.+.+.+|++||+.|++
T Consensus       350 ~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~a  404 (485)
T KOG0569|consen  350 LLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSA  404 (485)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHH
Confidence            66543322111                1112223344566778999999999974

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.96  E-value=1.3e-27  Score=230.14  Aligned_cols=355  Identities=14%  Similarity=0.107  Sum_probs=220.7

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhh-----cccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDF-----QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP  113 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~  113 (407)
                      +++.+..+.++.+.++++...++...|.+.+++     +.+..+      .+++.+.+.++..++++++|+++||+|||+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~   87 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSV------SAAVNGSASIGTLAGQLFFGWLADKLGRKR   87 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHH------HHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence            344455677788889999999998888877653     122333      789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccch------HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHH
Q 015396          114 VIIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIG  186 (407)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  186 (407)
                      ++.++.++..++.++++++++      ++.+++.|++.|++.|...+. ..+++|++|+++|++++++.+....+|..++
T Consensus        88 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g  167 (502)
T TIGR00887        88 VYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAG  167 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988888765      789999999999999887774 9999999999999999999999999999999


Q ss_pred             HHhhhhhcCCCCC-CCCc-----cccccc-ccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhh-hh--hhh
Q 015396          187 PALGGFLAQPAEK-YPNL-----FSSESL-FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD-VS--YDA  256 (407)
Q Consensus       187 ~~~~~~l~~~~~~-~~~~-----~gw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~--~~~  256 (407)
                      +.++..+.....+ ....     ..++.. ...++||.++.+.++..++.++..+++||+|++...++++++ ..  ..+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~  247 (502)
T TIGR00887       168 AIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSA  247 (502)
T ss_pred             HHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence            9998876531100 0000     001100 013578888888888887777777889999997433222111 11  011


Q ss_pred             hhh-----chhhhhh---hhcccccccccccccc---hhHHHHH----HHHHHhhccchhhhHHhhhccCCCccCccccc
Q 015396          257 LES-----ASAEVKE---EEGREATPKKSLLKNW---PLMSSII----VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS  321 (407)
Q Consensus       257 ~~~-----~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s  321 (407)
                      ..+     ..++.++   +++....+++++++++   +.++..+    ..+.......+...+.|.++.+      .|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~------~G~~  321 (502)
T TIGR00887       248 VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA------IGYS  321 (502)
T ss_pred             HhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH------HcCC
Confidence            100     0000000   0011112455665432   2212111    1111111222222233444332      4554


Q ss_pred             hhhHH-----------H-HHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHHhh----hhhhhHhh
Q 015396          322 TQMVG-----------E-VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAML----SGFGLAFL  385 (407)
Q Consensus       322 ~~~~~-----------~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  385 (407)
                      ..+.+           . ......++.+++. ++.+++.||+|||+.+..+..+..+++..+......    ........
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~-~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  400 (502)
T TIGR00887       322 PPAATNNAYEELYKTAVGNLIIALAGTVPGY-WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVL  400 (502)
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            33211           1 1223334445555 478999999999999888877766665544432210    00111101


Q ss_pred             ------hhhhHHHHHHHhhcCCCCCCC
Q 015396          386 ------LNCASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       386 ------~~~~~~~~~~~~~~~p~~~rs  406 (407)
                            .+.........+|.+|++.|+
T Consensus       401 ~~~~~~~~~~~~~~~~~~E~~p~~~R~  427 (502)
T TIGR00887       401 AQFFANFGPNATTFIVPGEVFPTRYRS  427 (502)
T ss_pred             HHHHHhcCCCchhhhhhhccCchhHHH
Confidence                  111123445578999999886

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.96  E-value=7.1e-27  Score=219.47  Aligned_cols=283  Identities=17%  Similarity=0.139  Sum_probs=220.1

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHH
Q 015396           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~  123 (407)
                      ..+.+..+...+....+.|.+|.+.+++|.++.+      .++..+.+.+++.+++++.|+++||+|||++++.+.++..
T Consensus        16 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~   89 (406)
T PRK15402         16 LCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEW------VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFI   89 (406)
T ss_pred             HHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            3455666677778889999999999999999998      9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 015396          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (407)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  202 (407)
                      ++.+.+..+++++.+++.|+++|++.+...+. .+++.|.+|+++|.+.+++......+|..++|.+++.+.+       
T Consensus        90 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~-------  162 (406)
T PRK15402         90 LTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH-------  162 (406)
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            99999999999999999999999998887665 8899999999999999999988888999999999999987       


Q ss_pred             cccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccccccc
Q 015396          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (407)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (407)
                      ..+|         +..+++.++..++..+. .+..||++++.+++.+. +                  +.....+.++++
T Consensus       163 ~~~w---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~  214 (406)
T PRK15402        163 VLPW---------RGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSL-K------------------ELGRDYKLVLKN  214 (406)
T ss_pred             ccCc---------cHHHHHHHHHHHHHHHHHHHhCCCCCccccccccH-H------------------HHHHHHHHHHcC
Confidence            3444         44446666665554433 34566654322111000 0                  011234567888


Q ss_pred             chhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHH
Q 015396          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (407)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (407)
                      |+++...+..++.......+....|.++.+.     +|+++.+.+.......++..++.. +.+++.||+++++.+.++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~~~~~g~~-~~g~l~~r~~~~~~~~~~~  288 (406)
T PRK15402        215 RRFVAGALALGLVSLPLLAWIALSPVILISG-----EQLSSYEYGLLQVPVFGALIAGNL-TLARLTSRRPLRSLIRMGL  288 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCHHHHHHHHH
Confidence            8888777766666555455555567665543     688888888888777777777774 8889999999999988887


Q ss_pred             HHHHHHHhhhhH
Q 015396          362 VLTIPLLTSYPY  373 (407)
Q Consensus       362 ~~~~~~~~~~~~  373 (407)
                      .+..++...+..
T Consensus       289 ~~~~~g~~~~~~  300 (406)
T PRK15402        289 WPMVAGLLLAAL  300 (406)
T ss_pred             HHHHHHHHHHHH
Confidence            777666665544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.96  E-value=1.3e-27  Score=229.32  Aligned_cols=298  Identities=19%  Similarity=0.156  Sum_probs=205.8

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHHHhhccc--------ccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMIKDFQIA--------KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (407)
                      +.+..+...++...+.+..+.+..+++.+        ..+      .+++.+++.++..+++++.|+++||+|||+++..
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~  106 (481)
T TIGR00879        33 AAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSL------WGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLI  106 (481)
T ss_pred             HHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhH------HHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHH
Confidence            33444566667788888889888888877        555      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcc---chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhh---
Q 015396          118 GTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG---  190 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---  190 (407)
                      +.++..++.+++.+.   .+++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+.+..+|..+++.++   
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~  186 (481)
T TIGR00879       107 IALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGK  186 (481)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999998888543   45668999999999998887775 99999999999999999999999999999999998   


Q ss_pred             hhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhh--hhhhhh-ch---h--
Q 015396          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVS--YDALES-AS---A--  262 (407)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~-~~---~--  262 (407)
                      ....+                ..+||.++.+.++..++.++..+++||++++...+++.++..  ..+... ..   +  
T Consensus       187 ~~~~~----------------~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (481)
T TIGR00879       187 VSLNN----------------TLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELL  250 (481)
T ss_pred             hcCCC----------------CccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHH
Confidence            55444                344555557766666666666677888765321111111100  000000 00   0  


Q ss_pred             --------hhhhhhcccccccccccc------cchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHH
Q 015396          263 --------EVKEEEGREATPKKSLLK------NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEV  328 (407)
Q Consensus       263 --------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~  328 (407)
                              ..+.+++..+..+.+.++      .+.++...+..+...........+.+.+...      .|++..+.+..
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~  324 (481)
T TIGR00879       251 DELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN------AGVSTDHAFLV  324 (481)
T ss_pred             HHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH------cCCCchHHHHH
Confidence                    000000000111222222      2222223333333333333444455555443      68888888888


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhh
Q 015396          329 LAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYP  372 (407)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  372 (407)
                      .....++.+++.. +.+++.||+++|+.+..+..+.+++++.+.
T Consensus       325 ~~~~~~~~~~~~~-~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  367 (481)
T TIGR00879       325 SIIVGAVNFAFTF-VAIFLVDRFGRRPLLLIGAAGMAICLFVLG  367 (481)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            8888888888885 889999999999998888777777666554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.96  E-value=2.2e-27  Score=220.00  Aligned_cols=300  Identities=13%  Similarity=0.097  Sum_probs=216.5

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHH-HHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      ++..+...+..........+..|. +.+++|.++.+      .+++.+++.+++.+++++.|+++||+|||+.+.++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   76 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQ------LGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLL   76 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHH------hhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            345667777778888889999995 88999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccc-hHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCC--
Q 015396          122 VVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE--  198 (407)
Q Consensus       122 ~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~--  198 (407)
                      ..++.+++++++ +++.+++.|+++|++.+...+..++++|++|+++|++++++.....++|..+++.+++.+.....  
T Consensus        77 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~  156 (366)
T TIGR00886        77 LAIPCLWAGLAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFG  156 (366)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999 99999999999999876665568899999999999999999998888888888777766654110  


Q ss_pred             -CCCCcccccccccCCCChhHHHHHHHH-HHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccc
Q 015396          199 -KYPNLFSSESLFGKFPYFLPCLCISLF-AFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (407)
Q Consensus       199 -~~~~~~gw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (407)
                       +.....+||+.|.        ...++. .+..++...+.+|.++..+++++.+..  +..    .   +.+++.....+
T Consensus       157 ~~~~~~~~w~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~---~~~~~~~~~~~  219 (366)
T TIGR00886       157 AGLPAHLAWGWAFV--------IVPAGILLLPALLIFFVGADTPPGKPATGKLSFK--GAR----W---SVGTGALGDQL  219 (366)
T ss_pred             ccccccccccchhH--------HHHHHHHHHHHHHHHHhcccCCcccccchhcccc--ccc----c---cccchhHHHHH
Confidence             0011234444330        222332 233333444556655332111100000  000    0   00000111345


Q ss_pred             cccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHH
Q 015396          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  356 (407)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  356 (407)
                      +.+++++++...+..++..........+.+.|..+.     +|+++.+.+.+.....+...++.. +.+++.||+++|+.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~  293 (366)
T TIGR00886       220 KVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQ-----FGLSKVTAGAYASLGGLLGSLARP-LGGAISDRLGGARK  293 (366)
T ss_pred             HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHHHhh-ccchHHHhhccchh
Confidence            677888888777777776666667777888887665     788999999999888888888874 88999999999887


Q ss_pred             HHHHHHHHHHHHhhh
Q 015396          357 ARIAGVLTIPLLTSY  371 (407)
Q Consensus       357 ~~~~~~~~~~~~~~~  371 (407)
                      +..+......+..++
T Consensus       294 ~~~~~~~~~~~~~~~  308 (366)
T TIGR00886       294 LLMSFLGVAMGAFLV  308 (366)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            776665555544443

>PRK03699 putative transporter; Provisional

Probab=99.96  E-value=1.8e-26  Score=215.64  Aligned_cols=284  Identities=12%  Similarity=0.155  Sum_probs=217.4

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      +++..+..++..++.........+.+|.+.+++|+|+++      .+++.+.+.+++.+++++.|+++||+|||+++..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~------~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~   78 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSS------MSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFG   78 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            345555667777788888888999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      .++.+++.++.+++++++.+++.|++.|++.+...+. .+++.|++|+++|+++++..+....+|..++|.+.+.+... 
T Consensus        79 ~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-  157 (394)
T PRK03699         79 FALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR-  157 (394)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999999999999999999999999988876664 88999999999999999999889999999999998887641 


Q ss_pred             CCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccc
Q 015396          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (407)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (407)
                                    ..+||.++.+.++..++..+..++ .+.|+..+++++  +.               ++    ..+.
T Consensus       158 --------------~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~~--~~---------------~~----~~~~  201 (394)
T PRK03699        158 --------------SIEWYWVYACIGLVYVAIFILTLF-SEFPALGKHAPK--AD---------------KP----VAKE  201 (394)
T ss_pred             --------------cccHHHHHHHHHHHHHHHHHHHHh-cCCccccccCcc--cc---------------Cc----cccc
Confidence                          234555557666655544433332 222211111000  00               00    0011


Q ss_pred             ccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHH
Q 015396          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (407)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  357 (407)
                       ..++.++...+..++.......+..+.|.|+.+.     +|+++.+.+.+.+...++..++.. +.+++.||+++|+.+
T Consensus       202 -~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~~~l  274 (394)
T PRK03699        202 -KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK-----FGMSLEDAGNLVSNFWMAYMVGMW-IFSFIVRFFDLQRIL  274 (394)
T ss_pred             -cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChHHhhHHHHHHHHHHHHHHH-HHHHHHHHhchhhHH
Confidence             1235566666666666666667778889888654     789999999999999999999985 889999999999988


Q ss_pred             HHHHHHHHHHHhhhh
Q 015396          358 RIAGVLTIPLLTSYP  372 (407)
Q Consensus       358 ~~~~~~~~~~~~~~~  372 (407)
                      .....+..+.+..+.
T Consensus       275 ~~~~~~~~~~~~~~~  289 (394)
T PRK03699        275 TVLAGLALVLMYLFV  289 (394)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            877766655554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.96  E-value=2.1e-26  Score=222.03  Aligned_cols=304  Identities=14%  Similarity=0.168  Sum_probs=212.6

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (407)
                      .+++.+..+++..+++.++.....+.+|.+.+++|.++.+      .+++.+.+.+++.+++++.|+++||+|||+.++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   90 (496)
T PRK03893         17 AQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQ------AASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            4456666788888899999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCC
Q 015396          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (407)
                      +.++.+++.++++++++++.+++.|++.|++.+...+. ..++.|++|+++|++++++...+.++|..++|.+++.+.+ 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-  169 (496)
T PRK03893         91 SIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP-  169 (496)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence            99999999999999999999999999999988776664 8999999999999999999999999999999999999987 


Q ss_pred             CCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhh--hhhhhhhhchhhhhhh-------
Q 015396          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD--VSYDALESASAEVKEE-------  267 (407)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-------  267 (407)
                            ..|||         ..+.+..+..++.++....+||++++.++++++.+  ...+.....+......       
T Consensus       170 ------~~~w~---------~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (496)
T PRK03893        170 ------VWGWR---------ALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAA  234 (496)
T ss_pred             ------cCCHH---------HHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHH
Confidence                  44444         44455444433333334455665432211111000  0000000000000000       


Q ss_pred             -------hccccccc-------------------ccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccc
Q 015396          268 -------EGREATPK-------------------KSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYS  321 (407)
Q Consensus       268 -------~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s  321 (407)
                             .......+                   ....+.+.........+...........++|.|+.+.     +|++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~~  309 (496)
T PRK03893        235 AALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTD-----LGYD  309 (496)
T ss_pred             HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhh-----cCCC
Confidence                   00000000                   0000001111111111121222223445778887544     7899


Q ss_pred             hhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHh
Q 015396          322 TQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT  369 (407)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  369 (407)
                      ..+.+.+.+...++..++.. +.+++.||+++|+.+..+..+..+..+
T Consensus       310 ~~~~g~~~~~~~~~~~~g~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~  356 (496)
T PRK03893        310 PHTVANVLFFSGFGAAVGCC-VGGFLGDWLGTRKAYVCSLLISQLLII  356 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            99999999999999999985 889999999999988877665555443

>TIGR00895 2A0115 benzoate transport

Probab=99.95  E-value=9.2e-27  Score=218.09  Aligned_cols=294  Identities=19%  Similarity=0.266  Sum_probs=206.0

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      .++.+.......+...+......+..|.+.+++|.++.+      .+++.+.+.++..+++++.|+++||+|||+.+..+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~   88 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQ------LGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWS   88 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHH------HHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHH
Confidence            344445555666777777788888899999999999988      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      .++..++.++..++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++...+..+|..++|.+++++.+  
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--  166 (398)
T TIGR00895        89 ILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP--  166 (398)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh--
Confidence            9999999999999999999999999999998887775 9999999999999999999999999999999999999987  


Q ss_pred             CCCCCcccccccccCCCChhHHHHHHHHHH-HHHHHHhccccCCCCCCCCcchh-hhhhhhhhhchh-----hhhhhhc-
Q 015396          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAF-GVTIAAFWLPETLHRHNDDDDSC-DVSYDALESASA-----EVKEEEG-  269 (407)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~-  269 (407)
                           ..||+..+         .+.++..+ ...+...++||+++...++++++ ++..++.+....     +..+++. 
T Consensus       167 -----~~g~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (398)
T TIGR00895       167 -----VFGWRSLF---------YVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKAT  232 (398)
T ss_pred             -----cccceeeh---------hhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccc
Confidence                 45555554         55543333 34444566787764322221111 110011100000     0000000 


Q ss_pred             -ccccc-cccccccc---hhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHH
Q 015396          270 -REATP-KKSLLKNW---PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLY  344 (407)
Q Consensus       270 -~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~  344 (407)
                       +..+. .+.+++++   ..+...+..++..........+.|.+..+      +|++..+.+.......++.+++.. +.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~-~~  305 (398)
T TIGR00895       233 QGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE------LGFSLSLAATGGALFNFGGVIGSI-IF  305 (398)
T ss_pred             cchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HH
Confidence             00111 11122222   22233333334344444444555644333      788899999999999999999985 88


Q ss_pred             HHHHHHhchhHHHHHHH
Q 015396          345 PFLERILGPIMVARIAG  361 (407)
Q Consensus       345 ~~l~~~~~~~~~~~~~~  361 (407)
                      +++.||+++++......
T Consensus       306 ~~l~~~~~~~~~~~~~~  322 (398)
T TIGR00895       306 GWLADRLGPRVTALLLL  322 (398)
T ss_pred             HHHHhhcchHHHHHHHH
Confidence            99999999885444333

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.95  E-value=1.2e-26  Score=220.65  Aligned_cols=279  Identities=12%  Similarity=0.048  Sum_probs=197.9

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~  125 (407)
                      .++.....++....+....|.+.++ |.+..+      .+++.+.+.++..+++++.|+++||+|||++++.+.++.+++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~------~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~  106 (452)
T PRK11273         34 IFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV  106 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHH------HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHH
Confidence            3344444445555567778888888 999999      999999999999999999999999999999999999999999


Q ss_pred             HHHhhcc----chHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHH-HHHHhhhhhcCCCCC
Q 015396          126 NTLFGLS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLAQPAEK  199 (407)
Q Consensus       126 ~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~  199 (407)
                      .++++++    .+++.+++.|++.|++.+...+ ....+.|++|+++|++++++.+.+.++|.. .+|+++..+..    
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~----  182 (452)
T PRK11273        107 MLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW----  182 (452)
T ss_pred             HHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----
Confidence            8888765    3788899999999998887766 477889999999999999999999999875 45554433332    


Q ss_pred             CCCcccccccccCCCChhHHHHHHHHHHH-HHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccc-ccc
Q 015396          200 YPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP-KKS  277 (407)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  277 (407)
                                  ..+|+..+++.++..++ .++..+++||+++....+++++. . ++.++..++.++++.+.... ...
T Consensus       183 ------------~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~  248 (452)
T PRK11273        183 ------------FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEY-K-NDYPDDYNEKHEQELTAKQIFMQY  248 (452)
T ss_pred             ------------hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhh-h-hccccccccccCCCccHHHHHHHH
Confidence                        22455555776665554 34455667877654221111100 0 00000000000000000111 123


Q ss_pred             ccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHh--chhH
Q 015396          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL--GPIM  355 (407)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~  355 (407)
                      +++++.+|...+..++..........++|.|+.+.     .|++..+++.......++.+++.. +.+++.||+  +||.
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-----~g~s~~~~~~~~~~~~~~~~~g~~-~~G~l~dr~~~~r~~  322 (452)
T PRK11273        249 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFRGNRG  322 (452)
T ss_pred             HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCCcc
Confidence            67889998888887777776677778999998765     688888889888888888888875 889999998  4443

>PRK11043 putative transporter; Provisional

Probab=99.95  E-value=4.3e-26  Score=213.88  Aligned_cols=273  Identities=18%  Similarity=0.188  Sum_probs=210.3

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (407)
                      +....+...+..+..+++.|.+|.+.+++|.++++      .++..+++.++..++++++|+++||+|||+++..+.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~   81 (401)
T PRK11043          8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASA------VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLF   81 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHH
Confidence            33444456666777888999999999999999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 015396          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (407)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  201 (407)
                      .++.+++.++++++.+++.|+++|++.+...+. .+++.|++|++++++..+.......+|..++|.+++++.+      
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~------  155 (401)
T PRK11043         82 ALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN------  155 (401)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence            999999999999999999999999987776665 8899999999999999999988899999999999999988      


Q ss_pred             CcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccccccc
Q 015396          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (407)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (407)
                                .++|+..+++.++..++..+..++++|++++.++   ++                    .+..+++++++
T Consensus       156 ----------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------------~~~~~~~~~~~  202 (401)
T PRK11043        156 ----------HFGWQAIFATLFAITLLLILPTLRLKPSKKARKQ---SQ--------------------DALTFKQLLKS  202 (401)
T ss_pred             ----------cCChHHHHHHHHHHHHHHHHHHHHcCCCCCcccc---ch--------------------HHHHHHHHHcC
Confidence                      4445555577666666655555555554321110   00                    01134566777


Q ss_pred             chhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHH
Q 015396          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (407)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (407)
                      ++++...+...+.......+..+.|.+..+      +|++..+.+.......++..+++. ..+++.||+++++......
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~g~~~~~~~~~~~~g~~-~~~~l~~r~~~~~~~~~~~  275 (401)
T PRK11043        203 KTYLGNVLIFAACSAAFFAWLTGSPFILEQ------MGYSPADIGLSYVPQTIAFLVGGY-GCRAALQKWGGEQLLPWLL  275 (401)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCHHHHHHHHH
Confidence            777765555544444444555566766543      688999999888887888888875 7889999999888766555


Q ss_pred             HHHHHH
Q 015396          362 VLTIPL  367 (407)
Q Consensus       362 ~~~~~~  367 (407)
                      ....++
T Consensus       276 ~~~~~~  281 (401)
T PRK11043        276 VLFAVS  281 (401)
T ss_pred             HHHHHH
Confidence            444443

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.95  E-value=3.5e-28  Score=216.54  Aligned_cols=279  Identities=18%  Similarity=0.150  Sum_probs=214.8

Q ss_pred             CCCchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHH
Q 015396           36 SGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI  115 (407)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~  115 (407)
                      .+.+++.+..+++..+++.++.+.+....+...+.+|++++.      .|++++.+.+.+.+++|++|+++||+.||+++
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~------~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~  101 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSE------LGLLQTVFIVVFMIASPLFGYLADRYNRKRVI  101 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchh------ccchhHHHHHHHHHHHHHHHHHHhhcCcceEE
Confidence            445667778899999999999999999999999999999999      99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          116 IMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      ..|..++.++.+.++++..+|++.++|.+.|+|.+.+.+. +++++|.+|.++|++++++++.+..+|..+|.+++..+.
T Consensus       102 ~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va  181 (493)
T KOG1330|consen  102 AVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVA  181 (493)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeec
Confidence            9999999999999999999999999999999999999886 999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCccc-ccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccc
Q 015396          195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (407)
Q Consensus       195 ~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (407)
                      .       +.+ ||+.|         ...+++.++.. +..++++|+++...++.+.....           ........
T Consensus       182 ~-------~~~~Wr~af---------~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----------~~~~ts~~  234 (493)
T KOG1330|consen  182 S-------LTFWWRWAF---------RGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----------VKPFTSVW  234 (493)
T ss_pred             c-------CccceEEEE---------EeehHHHHHHHHHHHhhccCcccccccccccCCcC-----------CCCccchH
Confidence            7       333 55554         56666666544 44566676654322211110000           00011123


Q ss_pred             cccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015396          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (407)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  350 (407)
                      ++.+.+.+++.+....+.+....+...++.-+.|.+.......  .|++..+...+..+...++.+|.+ .++.++||
T Consensus       235 kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~--~~~~~~~~~ifg~vt~~~G~lGvl-~Ggiisd~  309 (493)
T KOG1330|consen  235 KDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYEL--IGFDHNATLIFGGVTCAGGSLGVL-FGGIISDK  309 (493)
T ss_pred             HHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHH--hCCccccchhhhhHHHhhchhhhe-ehHHHHHH
Confidence            3445566667777777777777777667666666665544333  345555555666666666666653 77777777

>TIGR00898 2A0119 cation transport protein

Probab=99.95  E-value=2.7e-27  Score=228.68  Aligned_cols=310  Identities=17%  Similarity=0.194  Sum_probs=214.7

Q ss_pred             hhHHHHHHhhccc---ccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHH
Q 015396           62 PFLYFMIKDFQIA---KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (407)
Q Consensus        62 ~~~~~~~~~~~~s---~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (407)
                      +..|.+.+|+|++   ..+      .+++.+++.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+
T Consensus       110 ~~~~~i~~e~~l~c~~~~~------~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWK------VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVF  183 (505)
T ss_pred             cccccEEEEecceechHHH------HHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            5667888999998   666      9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChh
Q 015396          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (407)
Q Consensus       139 ~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~  217 (407)
                      ++.|++.|++.+...+. .+++.|++|+++|+++.++...+..+|.+++|.+++.+.+                   ||.
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-------------------wr~  244 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-------------------WRW  244 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-------------------HHH
Confidence            99999999998887775 9999999999999999999999999999999998866643                   555


Q ss_pred             HHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhh--hhhhhc------h----h--hhhhhhcccccccccccccch
Q 015396          218 PCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESA------S----A--EVKEEEGREATPKKSLLKNWP  283 (407)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~------~----~--~~~~~~~~~~~~~~~~~~~~~  283 (407)
                      .+++.++..++..+..+++||+|++...+++.+++.+  ++..+.      .    .  +.++.+++.+...++++++|.
T Consensus       245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  324 (505)
T TIGR00898       245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPN  324 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChH
Confidence            5577777777766666788999876533332222111  000000      0    0  000001111245678888888


Q ss_pred             hHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHH
Q 015396          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (407)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (407)
                      ++...+...+..+.........+.+...      ++.+..   ......++..+++.+ +.+++.||+|||+.+..+.++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~~~~~i~~~~-~~~~l~dr~grr~~~~~~~~~  394 (505)
T TIGR00898       325 LRKTTLCLMMLWFTTAFSYYGLVLDLGN------LGGNIY---LDLFISGLVELPAKL-ITLLLIDRLGRRYTMAASLLL  394 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccc------cCCChH---HHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHH
Confidence            8776665544433322222222222221      444433   233344566666664 788999999999999998888


Q ss_pred             HHHHHhhhhHHHhhhhhhh--Hhhh------hhhHHHHHHHhhcCCCCCCC
Q 015396          364 TIPLLTSYPYIAMLSGFGL--AFLL------NCASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~p~~~rs  406 (407)
                      .+++++.+.+.........  ...+      ...........|.+|++.|+
T Consensus       395 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  445 (505)
T TIGR00898       395 AGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN  445 (505)
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh
Confidence            8777776555432211111  1111      11123345668899988775

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.95  E-value=1.6e-26  Score=220.94  Aligned_cols=285  Identities=14%  Similarity=0.154  Sum_probs=218.4

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhHHHHHH----------------------hhcccccccchhhHHHHHHHHHHHHH
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIK----------------------DFQIAKREEDIGSYAGYVGSSFMFGR   95 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~s~~~~~~~~~~g~~~~~~~~~~   95 (407)
                      .++.....++.+..+.+.++.......+.+.+                      +++.+..+      .|++.+.+.+++
T Consensus        16 ~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~s~~~~~~   89 (465)
T TIGR00894        16 FRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGAL------QGLILSSHFYGQ   89 (465)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHH------hhHHHHHHHHHH
Confidence            34455556777777778888777777776665                      67788887      999999999999


Q ss_pred             HHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhh
Q 015396           96 ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGL  172 (407)
Q Consensus        96 ~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~  172 (407)
                      .+++++.|+++||+|||+++..+.++++++.+++.++  .+++.+++.|+++|++.+...+. ..+++|++|+++|++++
T Consensus        90 ~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~  169 (465)
T TIGR00894        90 IIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLL  169 (465)
T ss_pred             HHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHH
Confidence            9999999999999999999999999999988876543  56888999999999999998886 99999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc-ccccccccCCCChhHHHHHHHHHHHHHHHHh-ccccCCCCCCCCcchh
Q 015396          173 STVSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSC  250 (407)
Q Consensus       173 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~  250 (407)
                      ++...+..+|.+++|++++.+.+       . .|||..|         ++.++..++..+.++ +.+|+|+.++..++++
T Consensus       170 ~~~~~~~~~g~~i~~~l~~~l~~-------~~~gw~~~f---------~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  233 (465)
T TIGR00894       170 GMSTSGFQLGTFIFLPISGWLCE-------SWGGWPMIF---------YVFGIVGCAWSLLWFVFPADDPSIHPCISKFE  233 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-------ccCCCCeeh---------hhhhHHHHHHHHHHHHHhcCCcccCCCCCHHH
Confidence            99999999999999999999987       3 2555544         777776665554444 4455554332221111


Q ss_pred             hhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHH
Q 015396          251 DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA  330 (407)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~  330 (407)
                      +   +..++..+ .++++.+.+..++++++++.++...+..++.......+..++|.|+.+.     +|++..+.++..+
T Consensus       234 ~---~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~g~s~~~~g~~~~  304 (465)
T TIGR00894       234 K---KYINSSLQ-GQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWV-----LRVSGKENGLLSS  304 (465)
T ss_pred             H---HHHHhhcc-cccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcChHHhHHHHH
Confidence            1   11111100 0000111234577889999999999988888888888888999888765     7899999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHhchh
Q 015396          331 ITGFSLLVFQLSLYPFLERILGPI  354 (407)
Q Consensus       331 ~~~~~~~~~~~~~~~~l~~~~~~~  354 (407)
                      ...++..++.. +.+++.||+++|
T Consensus       305 ~~~~~~~i~~~-~~g~l~d~~~~~  327 (465)
T TIGR00894       305 LPYLFAWLCSI-FAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHc
Confidence            99999998885 889999987644

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.95  E-value=2.4e-26  Score=213.87  Aligned_cols=267  Identities=21%  Similarity=0.287  Sum_probs=208.2

Q ss_pred             hhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccc
Q 015396           54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV  133 (407)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~  133 (407)
                      .+..+++.|.+|.+.+++|.++++      .+++.+++.++..++.++.|+++||+|||+++..+.++.+++.+.+.+++
T Consensus         4 ~~~~~~~~p~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~   77 (377)
T PRK11102          4 PLAIDMYLPALPVIAADFGVSAGS------VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ   77 (377)
T ss_pred             chHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            345677889999999999999999      99999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccC
Q 015396          134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK  212 (407)
Q Consensus       134 ~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~  212 (407)
                      +++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++.+.+                .
T Consensus        78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----------------~  141 (377)
T PRK11102         78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV----------------W  141 (377)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------H
Confidence            9999999999999998887775 8999999999999999999999999999999999999987                3


Q ss_pred             CCChhHHHHHHHHHHHHH-HHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHH
Q 015396          213 FPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY  291 (407)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (407)
                      ++|+..+.+.++..++.. ...+++||+++.+++++.+.+                  +.....++.+++++++...+..
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  203 (377)
T PRK11102        142 FSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLR------------------TTIRNFASLFRHKRVLGYMLAS  203 (377)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChH------------------HHHHHHHHHHcChHHHHHHHHH
Confidence            445555576666655543 344566765432211110000                  0011344567788777666655


Q ss_pred             HHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHH
Q 015396          292 CVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (407)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  366 (407)
                      ++.......+....|.+..+.     +|+++.+.+.......++..++.. ..+++.||+++|+.+..+..+..+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~g~~~~~~~~~~~~~~  272 (377)
T PRK11102        204 GFSFAGMFSFLTAGPFVYIEL-----NGVSPQNFGYYFALNIVFLFVMTI-INSRFVRRVGALNMLRFGLWIQFI  272 (377)
T ss_pred             HHHHHHHHHHHHcCHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHH
Confidence            554444444444444444433     688999999999999999999985 889999999999998887765443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.95  E-value=1.7e-26  Score=215.30  Aligned_cols=275  Identities=13%  Similarity=0.095  Sum_probs=204.2

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      .+..++...++..++...+....+.+.++++.++.+      .+++.+.+.+++.++.++.|+++||+|||++++++.++
T Consensus         4 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~   77 (393)
T PRK11195          4 GFYAIMAAQFFSALADNALLFAAIALLKELHYPDWS------QPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI   77 (393)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence            345567778888887776777777778999998888      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 015396          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (407)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  200 (407)
                      .+++.+++.++.+.   ++.|+++|++.+...|. .+++.|++|+++|++++++.+....+|.++||.++|++.+     
T Consensus        78 ~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-----  149 (393)
T PRK11195         78 KLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-----  149 (393)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            99888877776664   78899999999998886 9999999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccc
Q 015396          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (407)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (407)
                        +          .|+.++.+.+...++..+..+.+||++++.+.++.+.+...++              .....+.+++
T Consensus       150 --~----------~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~  203 (393)
T PRK11195        150 --P----------HAEAALAVCALIYLLAALFNLFIPRLGARRPGQSWNPIALLRD--------------FFHACRVLWR  203 (393)
T ss_pred             --H----------HHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCHHHHHHH--------------HHHHHHHHHh
Confidence              1          1344445444444444445567787654322111110000000              0012345677


Q ss_pred             cchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHH
Q 015396          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (407)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (407)
                      +|.++.......+...........++.|.++.     +|.++.+.|.+....+++.++++. ..+++.||.++++.+..+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----lg~s~~~~G~~~~~~~~g~i~g~~-~~~~l~~~~~~~~~~~~g  277 (393)
T PRK11195        204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA-----LGITLNQPAYLQAVVAIGIAVGAG-AAARLVTLETVLRVLPAG  277 (393)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCChhHHHHHHHHHHHHHHHHHH-HHHHHhcCCcccchHHHH
Confidence            77766555444444444344444556666554     788999999999999999999985 778888888888777766


Q ss_pred             HH
Q 015396          361 GV  362 (407)
Q Consensus       361 ~~  362 (407)
                      ..
T Consensus       278 ~~  279 (393)
T PRK11195        278 IL  279 (393)
T ss_pred             HH
Confidence            43

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.95  E-value=1e-25  Score=209.67  Aligned_cols=275  Identities=15%  Similarity=0.154  Sum_probs=207.6

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      +.++.+....++..+......+.+|.+.+++|.|+.+      .|++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~------~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~   79 (381)
T PRK03633          6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQ------VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASL   79 (381)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888999999999999999999999998      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 015396          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (407)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (407)
                      +.+++.+.+++++|++.+++.|+++|++.+...+. .+.+.+..++++|+++++.+..+.++|..+||.+++.+.+.   
T Consensus        80 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---  156 (381)
T PRK03633         80 IFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE---  156 (381)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---
Confidence            99999999999999999999999999998887775 77788889999999999999999999999999999998761   


Q ss_pred             CCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccccc
Q 015396          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (407)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (407)
                          ..|     ...|+.    ..+...+..+.....+++  .. +++                       +..+.++.+
T Consensus       157 ----~~~-----~~~~~~----~~~~~~~~~~~~~~~~~~--~~-~~~-----------------------~~~~~~~~~  197 (381)
T PRK03633        157 ----LMS-----VLPWVT----GLVLAAILPLLFTRILNQ--QA-ENH-----------------------DSTSIWPML  197 (381)
T ss_pred             ----ccc-----hHHHHH----HHHHHHHHHHHHhcccCC--CC-CCC-----------------------CCCCHHHHH
Confidence                111     111221    111111111111111211  10 000                       011234456


Q ss_pred             ccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHH
Q 015396          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (407)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  359 (407)
                      +++.++......++..........+.|.|..+      .|.+..+.+.+.+...++.++++. ..+++.||+++|+.+..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~~~~~~l~~  270 (381)
T PRK03633        198 KLRQARLGVNGCIISGIVLGSLYGLMPLYLNH------QGMSDASIGFWMALLVSAGILGQW-PIGRLADRFGRLLVLRV  270 (381)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHh-hhHHHHHHcCcHHHHHH
Confidence            77776654433333333344455667877754      588888999999999999999985 78999999999998887


Q ss_pred             HHHHHHHHHhh
Q 015396          360 AGVLTIPLLTS  370 (407)
Q Consensus       360 ~~~~~~~~~~~  370 (407)
                      +..+..++...
T Consensus       271 ~~~~~~~~~~~  281 (381)
T PRK03633        271 QVFVVILGSIA  281 (381)
T ss_pred             HHHHHHHHHHH
Confidence            77766665543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.95  E-value=1.3e-25  Score=209.92  Aligned_cols=311  Identities=16%  Similarity=0.198  Sum_probs=219.9

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHH-HHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHH
Q 015396           44 FSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (407)
                      ..+....++.........|.++. +.+++|.+..+      .|++.+...++..+.+++.|+++||+|||+++..+.++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~   86 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVM------VGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMR   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHH
Confidence            34556677777777888888884 56889999999      999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 015396          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (407)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  201 (407)
                      .++.+.+.++++++.+++.|+++|++.+...+. .+++.|++|+++|++++++.+...++|..+||.+++++.+      
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~------  160 (400)
T PRK11646         87 AAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ------  160 (400)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            999999999999999999999999998887775 8999999999999999999999999999999999999973      


Q ss_pred             CcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccc
Q 015396          202 NLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (407)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (407)
                        .|         |+..+++.++..++.. +..++.||.+..   +.+  +                  +....+++.++
T Consensus       161 --~g---------~~~~f~~~~~~~~~~~i~~~~~~~~~~~~---~~~--~------------------~~~~~~~~~~~  206 (400)
T PRK11646        161 --YD---------FRLVCATGAVLFVLAAAFNAWLLPAYKLS---TVR--T------------------PVREGMTRVLR  206 (400)
T ss_pred             --hh---------HHHHHHHHHHHHHHHHHHHHHhCCccccc---ccc--h------------------hhHHHHHHHHc
Confidence              23         4444566665544433 333445542211   000  0                  01113456677


Q ss_pred             cchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHH
Q 015396          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (407)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (407)
                      +++++...+..+...........+.|.|..+      .+.++.+.+.+.+..+++...+.....++.+||++.++.+..+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  280 (400)
T PRK11646        207 DKRFVTYVLTLTGYYMLAVQVMLMLPIMVND------IAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAG  280 (400)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhhhhhHHh------hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            8887765554444333333334456776655      3346778888888877777666655777777777777766777


Q ss_pred             HHHHHHHHhhhhHHHhhhhhhhHhhh-hhh-----HHHHHHHhhcCCCCCCC
Q 015396          361 GVLTIPLLTSYPYIAMLSGFGLAFLL-NCA-----SVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~p~~~rs  406 (407)
                      ..+..++...+...+..........+ +..     ........+..|++.|+
T Consensus       281 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g  332 (400)
T PRK11646        281 LLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARG  332 (400)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccch
Confidence            76666666655544433222111111 111     12245566788887775

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=9.3e-27  Score=205.94  Aligned_cols=291  Identities=14%  Similarity=0.132  Sum_probs=241.1

Q ss_pred             CCchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHH
Q 015396           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (407)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (407)
                      +.+.++++.-++.....++...+..++.+.+.+++|+|++|      .+++.++..+...+..++.|.+.||+|.|++..
T Consensus        10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q------~~ll~aiPil~GallRl~~g~l~drfGgR~~~~   83 (417)
T COG2223          10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQ------KGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI   83 (417)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHH------HHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence            34457777777888888888999999999999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccch---HHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396          117 MGTASVVIFNTLFGLSVN---FWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (407)
                      ++.++..+-++..+++.+   +|++++.+++.|++.+.+....+++++++|+|++|.++|+.. ..|+|..+..+++..+
T Consensus        84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223          84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence            999999999998888754   459999999999999999888999999999999999999999 8999999998888888


Q ss_pred             cCCCCCCCCcccccccccCCCChhHHHHHHHHHHH-HHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccc
Q 015396          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (407)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (407)
                      ..       .+|+-      .|+....+..+..++ .+..++.+.|.|+.+...++..                     +
T Consensus       163 ~~-------~~g~~------~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~---------------------~  208 (417)
T COG2223         163 AV-------AFGFL------AWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQL---------------------P  208 (417)
T ss_pred             HH-------HHhhH------HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccc---------------------h
Confidence            87       44410      144444555555444 4444555666555322221111                     0


Q ss_pred             cccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 015396          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (407)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (407)
                      ...+.++++++.|.+.+.|+.......++..++|.|+.++     +|.+..++|.......+.+.+.+ +++|+++||+|
T Consensus       209 ~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~-----fg~~~~~Ag~~a~~f~~~g~l~R-p~GG~LsDR~G  282 (417)
T COG2223         209 AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQ-----FGLSPVTAGLIAFLFPLIGALAR-PLGGWLSDRIG  282 (417)
T ss_pred             hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhhHHHHHHHHHHHHHHHH-hccchhhhhcc
Confidence            2456678899999999999999999999999999999988     89999999999999999999998 59999999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhhHH
Q 015396          353 PIMVARIAGVLTIPLLTSYPYI  374 (407)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~  374 (407)
                      .+|++...+..+.++.......
T Consensus       283 g~rv~~~~f~~~~~~~~~l~~~  304 (417)
T COG2223         283 GRRVTLAVFVGMALAAALLSLF  304 (417)
T ss_pred             chhHHHHHHHHHHHHHHHHHcc
Confidence            9999988888887777665443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.95  E-value=1.6e-25  Score=209.96  Aligned_cols=276  Identities=20%  Similarity=0.143  Sum_probs=196.1

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHHH-HHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      ++.+..+....++..++..+..|.+|. +.+++|.++.+      .|++.+++.++..+++++.|+++||+|||+++..+
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~   87 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFL------AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG   87 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHH------HHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH
Confidence            366777888899999999999999996 56889999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc--------chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 015396          119 TASVVIFNTLFGLS--------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (407)
Q Consensus       119 ~~~~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  189 (407)
                      .++.+++.+.+.++        .+++.+++.|+++|++.+...+. .+++.|++|+++|++++++...+..+|.++||.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l  167 (399)
T PRK05122         88 LCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPL  167 (399)
T ss_pred             HHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHH
Confidence            98888776655442        25678999999999998887775 8889999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhc
Q 015396          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (407)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (407)
                      ++.+.+                ..+|+..+.+.++..++..+.....|+.++.   ++++ +                  
T Consensus       168 ~~~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~------------------  209 (399)
T PRK05122        168 GVLLYH----------------WGGLAGLGLLIMLLALLGLLLARPRPAVPPV---KGER-L------------------  209 (399)
T ss_pred             HHHHHH----------------cccHHHHHHHHHHHHHHHHHHHhcCCCCCCC---Cccc-h------------------
Confidence            999987                4445544455555444333332222222111   0000 0                  


Q ss_pred             ccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015396          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~  349 (407)
                          +.++.++  +.+.......+..........+.+.|..+      .|++  +.+......+++..++.. ..+++.|
T Consensus       210 ----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~-~~g~l~~  274 (399)
T PRK05122        210 ----PFRRVLG--RVWPYGMGLALASIGFGTIATFITLYYAA------RGWD--GAALALTLFGVAFVGARL-LFGNLIN  274 (399)
T ss_pred             ----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccc--cchHHHHHHHHHHHHHHH-HHHHHHH
Confidence                0111111  11211122222222333344456666543      3432  345566677778888774 7889999


Q ss_pred             HhchhHHHHHHHHHHHHHHhhhhHH
Q 015396          350 ILGPIMVARIAGVLTIPLLTSYPYI  374 (407)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~  374 (407)
                      |+++++.+..+..+..++...+...
T Consensus       275 r~~~~~~~~~~~~~~~~~~~~~~~~  299 (399)
T PRK05122        275 RLGGLRVAIVSLLVEILGLLLLWLA  299 (399)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998888877777766655443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.95  E-value=2.4e-25  Score=207.00  Aligned_cols=274  Identities=16%  Similarity=0.173  Sum_probs=199.7

Q ss_pred             HHHHHhhhhhhchhhhHHH-HHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH-HHHHHHHH
Q 015396           48 IIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIF  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~-~~~~~~~~  125 (407)
                      +..++..+......|.+|. +.+++|.++.+      .|++.+++.+...+.+++.|+++||+||||.++. +.++..++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~   77 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAM------IGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALA   77 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4567778888889999996 46789999999      9999999999999999999999999999887654 56666677


Q ss_pred             HHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhh--hHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 015396          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALG--LSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (407)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  202 (407)
                      .++++++++++.+++.|++.|.+.+...|. .++..|+.|+++|++.  .+....+.++|.+++|.+++.+.+       
T Consensus        78 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~-------  150 (375)
T TIGR00899        78 CLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL-------  150 (375)
T ss_pred             HHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-------
Confidence            788888999999999999998876666675 7888898888777754  577788889999999999999987       


Q ss_pred             cccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccccccc
Q 015396          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (407)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (407)
                               .++|+.++++.++..++..+. .+++||.+++.+++++                       ..+.++.+++
T Consensus       151 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~  198 (375)
T TIGR00899       151 ---------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALT-----------------------RLEVRGLLAS  198 (375)
T ss_pred             ---------hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccC-----------------------cchhhhhhcC
Confidence                     445555557777765554443 4557876543211100                       0012234566


Q ss_pred             chhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHH
Q 015396          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (407)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (407)
                      ++++......++...........+|.|+.+.     +|.++.+.+.+.....+...++. ++.+++.||+++|+.+..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~  272 (375)
T TIGR00899       199 RDTRLLFVACTLMWGCNILYIINMPLLIIHE-----LGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAA  272 (375)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHH
Confidence            6666555444444443334444566665443     68888888888877766666666 47899999999999888776


Q ss_pred             HHHHHHHhhhh
Q 015396          362 VLTIPLLTSYP  372 (407)
Q Consensus       362 ~~~~~~~~~~~  372 (407)
                      ....+....+.
T Consensus       273 ~~~~~~~~~~~  283 (375)
T TIGR00899       273 LAGVAFYTGLA  283 (375)
T ss_pred             HHHHHHHHHHH
Confidence            66555544433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=4.7e-27  Score=229.50  Aligned_cols=311  Identities=16%  Similarity=0.136  Sum_probs=231.9

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~  124 (407)
                      ..++..+...+..+...+.++.+.++|+++..+      .|++.+.+.++++++.++.|++.||+||||.+.++.++.++
T Consensus        37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~------~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~l  110 (633)
T TIGR00805        37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSS------SGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGL  110 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCc------ceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHH
Confidence            344466666667788889999999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHhhccc---------------------------------------------------hHHHHHHHHHHHhhhccchh
Q 015396          125 FNTLFGLSV---------------------------------------------------NFWMAVLTRFLLGSLNGLLG  153 (407)
Q Consensus       125 ~~~~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~g~~~  153 (407)
                      +++++++.+                                                   .+..++++|+++|++.+...
T Consensus       111 g~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~  190 (633)
T TIGR00805       111 GSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIF  190 (633)
T ss_pred             HHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcch
Confidence            999887753                                                   24567899999999999988


Q ss_pred             HH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC---------cccccccccCCCChhHHHHHH
Q 015396          154 PI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN---------LFSSESLFGKFPYFLPCLCIS  223 (407)
Q Consensus       154 ~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~---------~~gw~~~~~~~~~~~~~~~~~  223 (407)
                      +. .+++.|++|+++|++.+++++.+..+|.++|+++++++.+...+|..         ..+|||   ..+||..+++.+
T Consensus       191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprW---iGaWwl~Fli~g  267 (633)
T TIGR00805       191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRW---IGAWWIGFLICG  267 (633)
T ss_pred             hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccH---HHHHHHHHHHHH
Confidence            86 99999999999999999999999999999999999999863222210         011222   224788888888


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhh-h---hhhcccccccccccccchhHHHHHHHHHHhhccc
Q 015396          224 LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEV-K---EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDM  299 (407)
Q Consensus       224 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (407)
                      ++.++..+.++++|++.+....+.+.+....+..+...++. .   +..++.....+.+++||.++...+..++......
T Consensus       268 ~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~  347 (633)
T TIGR00805       268 GVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFN  347 (633)
T ss_pred             HHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            87777666666677654322111100000000000000000 0   0011122356678999999999999999988888


Q ss_pred             hhhhHHhhhccCCCccCccccchhhHHHHHHHHHHH-HHHHHHhHHHHHHHHhc--hhHHHHHHHHHHHHHHhh
Q 015396          300 AYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFS-LLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTS  370 (407)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~  370 (407)
                      ++..++|.|++..     +|+++.+++++.....+. .+++. ++++++.||++  .++.+..+.++..++.+.
T Consensus       348 ~~~~~lP~yl~~~-----~g~s~~~ag~l~~~~~i~~~~vG~-~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       348 GYITFLPKYLENQ-----YGISSAEANFLIGVVNLPAAGLGY-LIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHH-----cCCcHHHHHHHhhhhhhhHHHHHH-hhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            9999999999876     899999999998887764 45555 58999999887  556777766666665544

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK12382 putative transporter; Provisional

Probab=99.95  E-value=1.8e-25  Score=209.03  Aligned_cols=275  Identities=16%  Similarity=0.174  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHH-HHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      +.++.+....++..+..++..|.+|. +.+++|.|..+      .|++.+++.++..+++++.|+++||+||||++..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~------~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~   88 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTM------VGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGM   88 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHH------HHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHH
Confidence            44556666777788888899999995 56899999999      999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhh---c-----cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhh
Q 015396          120 ASVVIFNTLFG---L-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (407)
Q Consensus       120 ~~~~~~~~~~~---~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (407)
                      +...++.+.+.   .     .++++.+++.|+++|++.+...+. .+++.|++|+|+|++++++.+.+..+|..++|+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~  168 (392)
T PRK12382         89 LACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLG  168 (392)
T ss_pred             HHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHH
Confidence            87776554321   1     357899999999999998887775 88899999999999999999999999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcc
Q 015396          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (407)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (407)
                      +++.+                .++|+..+.+..+..++........||.+++   ++++ +                   
T Consensus       169 ~~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~-------------------  209 (392)
T PRK12382        169 LLLHS----------------HFGFAALALTTMVLPLLAWAFNGTVRKVPAH---AGER-P-------------------  209 (392)
T ss_pred             HHHHh----------------ccChHHHHHHHHHHHHHHHHHHHhccCCCCC---cccC-c-------------------
Confidence            99987                3445544444433333222222222322111   0000 0                   


Q ss_pred             cccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015396          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  350 (407)
                         +.++..+  .++...+...+..........+.+.|..+      .+++.  .+......+++.++++. ..+++.||
T Consensus       210 ---~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~-~~g~l~~r  275 (392)
T PRK12382        210 ---SLWSVVG--LIWKPGLGLALQGVGFAVIGTFVSLYFAS------KGWAM--AGFTLTAFGGAFVLMRV-LFGWMPDR  275 (392)
T ss_pred             ---hHHHHHH--HHHHhHHHHHHHHHHHhHHHHHHHHHHHh------cCCch--hHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence               0011111  11111111122222223344455666544      34433  45556666777777774 78899999


Q ss_pred             hchhHHHHHHHHHHHHHHhhhhHH
Q 015396          351 LGPIMVARIAGVLTIPLLTSYPYI  374 (407)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~  374 (407)
                      +++|+.+..+..+..++...+...
T Consensus       276 ~g~~~~~~~~~~~~~~~~~~~~~~  299 (392)
T PRK12382        276 FGGVKVAIVSLLVETVGLLLLWLA  299 (392)
T ss_pred             cCCCeehHHHHHHHHHHHHHHHHc
Confidence            999999888887777776655443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.95  E-value=3.1e-25  Score=207.39  Aligned_cols=303  Identities=13%  Similarity=0.078  Sum_probs=220.8

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      .+..++...+..++..+...|.+|.+++++|.++.+      .|++.+.+.+++.+++++.|++.||+|||+++..+.++
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~------~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l   77 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQ------AALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFL   77 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            345667777788888899999999999999999999      99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc---cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          122 VVIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       122 ~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      .+++.+++..   .++++.+++.|++.|++.|...+. .+++.+..|+++|++.+++.+...++|..++|.+++.+....
T Consensus        78 ~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~  157 (410)
T TIGR00885        78 YALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSN  157 (410)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999887643   468999999999999999998775 889999999999999999999999999999999999886421


Q ss_pred             CCCCCc-cccccc---------ccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhh
Q 015396          198 EKYPNL-FSSESL---------FGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (407)
Q Consensus       198 ~~~~~~-~gw~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (407)
                      ...... .-+...         -...+||.++.+.++..++..+...+.++++.++ ++++  +                
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-~~~~--~----------------  218 (410)
T TIGR00885       158 LPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-SDAK--Q----------------  218 (410)
T ss_pred             CccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cccc--c----------------
Confidence            000000 000000         0013477777777776655443333222111110 0000  0                


Q ss_pred             hcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 015396          268 EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (407)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l  347 (407)
                       .+.....++++|+|.++...+..+++...+.+..++++.|..+..    .+.+....+...+.......++++ +++++
T Consensus       219 -~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~----~~~~~~~a~~~~~~~~~~~~vGR~-~~~~l  292 (410)
T TIGR00885       219 -ISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLI----PGMTAGFAANYNIGAMVIFFISRF-IGTWL  292 (410)
T ss_pred             -ccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence             001113346778888888888888887777777778888775421    234444445555555566777774 89999


Q ss_pred             HHHhchhHHHHHHHHHHHHHHhhhhHHH
Q 015396          348 ERILGPIMVARIAGVLTIPLLTSYPYIA  375 (407)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (407)
                      .||+++|+.+.+......+.+++..+.+
T Consensus       293 ~~r~~~~~~l~i~~~~~~~~~ll~~~~~  320 (410)
T TIGR00885       293 ISYLAAHKVLMAYAIIGMALCLGSIFAG  320 (410)
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999998888887777777665543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.95  E-value=2.5e-25  Score=208.18  Aligned_cols=266  Identities=16%  Similarity=0.255  Sum_probs=203.8

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      +++.+.......++..+....+.|.+|.+.+++|.++.+      .+++.+.+.++..+++++.|+++||+|||+.+..+
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~   79 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGA------VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVG   79 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHH
Confidence            456666666666677788888899999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      .++..++.+++.++++++.+++.|++.|++.+...+. ..+..|.+++++|+++++..+.+..+|..++|.+++.+.+  
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--  157 (394)
T PRK11652         80 MSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT--  157 (394)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            9999999999989999999999999999988876665 7888999999999999999999999999999999999987  


Q ss_pred             CCCCCcccccccccCCCChhHHHHHHHHHHHH-HHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccc
Q 015396          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (407)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (407)
                                    ..+|+.++.+.++..++. ++..++.||+++.++++++                      .....+
T Consensus       158 --------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~  201 (394)
T PRK11652        158 --------------LFGWRACYLFLLLLGAGVTFSMARWMPETRPADARRTR----------------------VLASYR  201 (394)
T ss_pred             --------------ccChHHHHHHHHHHHHHHHHHHHHhCCccCccccchhH----------------------HHHHHH
Confidence                          344555557666555443 3344566775432211100                      011344


Q ss_pred             cccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchh
Q 015396          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (407)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (407)
                      ..++++.++...+..+........+....+.+..+.     +|+++.+.+++.....++.++++. +.+++.||.+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~g~~-~~~~l~~~~~~~  273 (394)
T PRK11652        202 TLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFSTL  273 (394)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            566777776655544444433333344444454443     788899999988888888887774 778888888743

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.95  E-value=2.1e-25  Score=211.85  Aligned_cols=284  Identities=13%  Similarity=0.082  Sum_probs=200.2

Q ss_pred             CCchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHH
Q 015396           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (407)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (407)
                      ..+|..+...++...........+....|.+.+++|.+.++      .+++.+.+.++..++.++.|+++||+|||++++
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~------~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~   88 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSE------TAWISSIMLAVLYAGGPISSILVNRFGCRPVVI   88 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhH------HHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHH
Confidence            34454554555555544455566778889999999999999      999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHH-HHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          117 MGTASVVIFNTLFGLSVNFWMAVL-TRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      .+.++..+++++++++++++.+++ .|++.|++.+...+ ..+++.++++ ++|++++++.+.+..+|..++|.+++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~  167 (455)
T TIGR00892        89 AGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF  167 (455)
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            999999999999999999998875 46999998887544 5788889986 78999999999999999999999999998


Q ss_pred             CCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhcc-ccCCCCCCCCcchhhhhhhhhhhch-hhhhhhhcccc
Q 015396          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVSYDALESAS-AEVKEEEGREA  272 (407)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  272 (407)
                      +                .++||.++++.++..++..+..+++ ++.+.+...+.++.+....+....+ +.....++..+
T Consensus       168 ~----------------~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (455)
T TIGR00892       168 E----------------SFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINR  231 (455)
T ss_pred             H----------------HhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhh
Confidence            8                3445555577776665544433333 2221111000000000000000000 00000000011


Q ss_pred             cccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015396          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (407)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  350 (407)
                      ....+++++|.++...+..++..........+++.|..+      .|++..+.+.+.+..+++.++++. ..+++.||
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~d~  302 (455)
T TIGR00892       232 FLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD------KGVDEYEAAFLLSIIGFVDIFARP-SCGLIAGL  302 (455)
T ss_pred             hcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcc
Confidence            112357788988888777777776666666777877654      688999999999999999998875 77888876

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=8.7e-26  Score=211.06  Aligned_cols=293  Identities=16%  Similarity=0.133  Sum_probs=225.5

Q ss_pred             HHHHHhhhhh-hchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHH
Q 015396           48 IIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (407)
Q Consensus        48 ~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~  126 (407)
                      ...+..+... +...+.+..+.++.+....+      .+.+.+++.++++++.+++|.+.||++-.+.+..+.+++++..
T Consensus        52 ~~y~~~~~d~~si~~a~l~g~~edl~~~~~~------l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~  125 (495)
T KOG2533|consen   52 YLYFHAYLDKSSIVNASLSGLKEDLKLVGNQ------LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFG  125 (495)
T ss_pred             HHHHHHhcchhcchhHHHcCCccccchhhhh------hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHH
Confidence            3333434433 23333334456788888888      9999999999999999999999999999999999999999888


Q ss_pred             HHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccc
Q 015396          127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (407)
Q Consensus       127 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g  205 (407)
                      ++....+|++.+++.|++.|+.++...|+ ..+++.|+.+++|++.++++....++|+++|.+++..+.+ ..+.....|
T Consensus       126 ~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~-~~~~~~~~g  204 (495)
T KOG2533|consen  126 FLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK-LNGSGGLAG  204 (495)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh-hcCCCCcCC
Confidence            88888999999999999999999998886 9999999999999999999999999999999999999765 222222556


Q ss_pred             ccccccCCCChhHHHHHHHHHHH-HHHHHhccccCCCCCCCCcchhhh-hhhhhhhchhhhhhhhcccccccccccccch
Q 015396          206 SESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDV-SYDALESASAEVKEEEGREATPKKSLLKNWP  283 (407)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (407)
                      ||+.|         ++.+++.++ .+++.+++|+.|.+..-.+++++. ..++.++...+..+++ .++..+++.+++|.
T Consensus       205 W~~~F---------iI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~dp~  274 (495)
T KOG2533|consen  205 WRWLF---------IIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENK-FKWKGFKEALKDPG  274 (495)
T ss_pred             ceeeh---------hHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccc-cCHHHHHHHHhchh
Confidence            66665         888877766 455677899988754222222111 1112221211111111 45567788999999


Q ss_pred             hHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHH----hchhHHHHH
Q 015396          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI----LGPIMVARI  359 (407)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~  359 (407)
                      +|...+..++......++..++|.|+.+.     .|++..+++.+.....++++++.+ +.++++||    ..+|.....
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~-----~~~s~~~a~~ls~~~~~~g~v~~i-~ag~lsdr~~~~~~~~~~~~~  348 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSN-----GGYSELQANLLSTPYDVGGIVGLI-LAGYLSDRLKTIFARRLLFIV  348 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcC-----CCcChHHhccccchHHhhhHHHHH-HHHHHHHHHhhhHHHHHHHHH
Confidence            99999999999999999999999999883     679999999999999999999985 89999999    555555444


Q ss_pred             HHHH
Q 015396          360 AGVL  363 (407)
Q Consensus       360 ~~~~  363 (407)
                      ...+
T Consensus       349 ~~~~  352 (495)
T KOG2533|consen  349 FLCL  352 (495)
T ss_pred             HHHH
Confidence            4333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.94  E-value=4.6e-26  Score=214.67  Aligned_cols=284  Identities=13%  Similarity=0.084  Sum_probs=210.8

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~  124 (407)
                      .+....++..+......+.+|.+.++++.++.+      .|++.+.+.++..+++++.|+++||+|||+++..+.++.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~   94 (417)
T PRK10489         21 AVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQ------VGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGL   94 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHH
Confidence            344556677777888889999999999988888      99999999999999999999999999999999888777776


Q ss_pred             HHHHhh-----ccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 015396          125 FNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (407)
Q Consensus       125 ~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (407)
                      +.+..+     ..++++.+++.|++.|++.+...+. .+++.|++|+++|+++.++.....++|..+||.+++.+.+   
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~---  171 (417)
T PRK10489         95 GFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA---  171 (417)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---
Confidence            655443     2567899999999999988877665 8899999999999999999999999999999999999987   


Q ss_pred             CCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccc
Q 015396          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSL  278 (407)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (407)
                          ..|         |++.+.+.++..++..+..+.+|+++++++++++..+                  +.....+..
T Consensus       172 ----~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------~~~~~~~~~  220 (417)
T PRK10489        172 ----AGG---------VAWNYGLAAAGTFITLLPLLRLPALPPPPQPREHPLR------------------SLLAGFRFL  220 (417)
T ss_pred             ----HHh---------hHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccchH------------------HHHHHHHHH
Confidence                333         4444466666655555556667765433211110000                  001123456


Q ss_pred             cccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHH
Q 015396          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (407)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (407)
                      +++|.++...+..++... ......++|.|..+.     +|.++.+.+.+.+..+++..++.. +.+++.||.++++.+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-----~g~~~~~~g~~~~~~~~g~~ig~~-~~~~l~~~~~~~~~l~  293 (417)
T PRK10489        221 LASPVVGGIALLGGLLTM-ASAVRVLYPALADEV-----WQMGAAQIGLLYAAVPLGAALGAL-TSGWLAHSARPGLLML  293 (417)
T ss_pred             HcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhc-----cCCChhHhHHHHHHHHHHHHHHHH-HHHHhhhccCcchHHH
Confidence            677776655544443332 234556777777665     688899999999999999999985 7889999877777777


Q ss_pred             HHHHHHHHHHhhhhHHH
Q 015396          359 IAGVLTIPLLTSYPYIA  375 (407)
Q Consensus       359 ~~~~~~~~~~~~~~~~~  375 (407)
                      .+..+..++.+.+.+.+
T Consensus       294 ~~~~~~~~~~~~~~~~~  310 (417)
T PRK10489        294 LSTLGSFLAVGLFGLMP  310 (417)
T ss_pred             HHHHHHHHHHHHHHccc
Confidence            77766666665544333

>TIGR00897 2A0118 polyol permease family

Probab=99.94  E-value=6.2e-25  Score=205.80  Aligned_cols=273  Identities=14%  Similarity=0.175  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      |.+....++.+..........+.++.+.+++|.++++      .|++.+.+.++..+++++.|+++||+||||++..+.+
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~   86 (402)
T TIGR00897        13 LNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQ------SASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLL   86 (402)
T ss_pred             chhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHH------hHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            5566677777777777777778888888999999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh---hc-cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHH-HHHHHhhhhhc
Q 015396          121 SVVIFNTLF---GL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL-IIGPALGGFLA  194 (407)
Q Consensus       121 ~~~~~~~~~---~~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~l~  194 (407)
                      +.+++.+++   +. .++++.+++.|++.|++.+...+. .+.+.+++|+++|++++|+.+.+.++|. .++|.+++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~  166 (402)
T TIGR00897        87 LWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI  166 (402)
T ss_pred             HHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            988887654   23 357889999999999987776664 7888899999999999999999999997 58999999988


Q ss_pred             CCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccc
Q 015396          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (407)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (407)
                      +       .+||+..+    |+..+..    .+..++..+..+|.+++.+++ ++ ++               .++..+.
T Consensus       167 ~-------~~g~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~-~~---------------~~~~~~~  214 (402)
T TIGR00897       167 P-------AFGEMNTL----WSALAFV----LTGGVIALFSNKDIFTPQHMQ-TR-EK---------------FSELGKA  214 (402)
T ss_pred             c-------ccchHHHH----HHHHHHH----HHHHHHHHhccCCCCCccccc-CC-cc---------------hhhHHHH
Confidence            7       44543322    3322211    111222233344432111110 00 00               0001113


Q ss_pred             cccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchh
Q 015396          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (407)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (407)
                      .+.++++|+++...+..++..........+.|.|..+      +|++..+.+.+.....++..++.. ..+++.||+++|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~~  287 (402)
T TIGR00897       215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE------LGFSTSEWLQIWGTFFFTNIVFNV-IFGIVGDKLGWM  287 (402)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHhhcch
Confidence            4567889999888777777777777777788888754      688898999988888999999985 789999999988


Q ss_pred             HHHH
Q 015396          355 MVAR  358 (407)
Q Consensus       355 ~~~~  358 (407)
                      +...
T Consensus       288 ~~~~  291 (402)
T TIGR00897       288 NTVR  291 (402)
T ss_pred             hHHH
Confidence            7654

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.94  E-value=1.5e-25  Score=212.23  Aligned_cols=284  Identities=14%  Similarity=0.063  Sum_probs=202.9

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      +.++...+.....+.....+....|.+.+ +|.++++      .++..+++.++..+++++.|+++||+|||+++..+.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~   99 (438)
T TIGR00712        27 QVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGE------LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhH------hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHH
Confidence            33344445556666666666777787775 5999999      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcc----chHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          121 SVVIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       121 ~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +.+++.++.+..    ++++.+.+.|++.|++.+...+ ....+.|++|+++|++++++.+.+..+|..++|.+.+...+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~  179 (438)
T TIGR00712       100 LSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA  179 (438)
T ss_pred             HHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            999888877654    4677888999999999888666 48889999999999999999999999999999888776544


Q ss_pred             CCCCCCCcccccccccCCCChhHHHHHHHHHHHH-HHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccc-c
Q 015396          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA-T  273 (407)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  273 (407)
                      .      ..         +|+..+++.++..++. ++..+++||+++....++.++.+  ++..+...+.++.+.+.+ .
T Consensus       180 ~------~~---------~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  242 (438)
T TIGR00712       180 W------FN---------DWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYR--NDYPDDYNEKAEQELTAKEI  242 (438)
T ss_pred             H------hh---------hhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcc--cccccccccccccccchHHH
Confidence            1      23         4555557766665553 44456677765432211111000  000000000000000000 0


Q ss_pred             ccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhch
Q 015396          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (407)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (407)
                      ..+.+++++.++...+..++..........+.|.|+.+.     .|+++.+.+.......++.+++.. +.+++.||+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~g~s~~~~~~~~~~~~~~~~ig~~-~~g~l~dr~~~  316 (438)
T TIGR00712       243 FMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVFK  316 (438)
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHc-----cCCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcc
Confidence            112467888888887776666666667777888888765     688999999999999999999885 88999999854


Q ss_pred             h
Q 015396          354 I  354 (407)
Q Consensus       354 ~  354 (407)
                      +
T Consensus       317 ~  317 (438)
T TIGR00712       317 G  317 (438)
T ss_pred             C
Confidence            3

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.94  E-value=1.2e-24  Score=204.74  Aligned_cols=293  Identities=22%  Similarity=0.350  Sum_probs=203.4

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      +....+++..++..+......+.+|.+.+++|.+..+. ...+.|++.+++.++..+++++.|+++||+|||+++..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   92 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSA-LNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSAL   92 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHH
Confidence            34556677888888888999999999999999887651 01124889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 015396          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (407)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  200 (407)
                      +..++.+++...++++.+++.|++.|++.+.......++.|++|+++|++++++......+|..++|.+++.+.+     
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-----  167 (408)
T PRK09874         93 GMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD-----  167 (408)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            999999888889999999999999999866544457888999999999999999999999999999999999987     


Q ss_pred             CCcccccccccCCCChhHHHHHHHHHHHHHH-HHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccccc
Q 015396          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (407)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (407)
                        ..         +|+..+.+.++..++..+ ..+++||++++.++++ +.+.                    ++..+.+
T Consensus       168 --~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------------------~~~~~~~  215 (408)
T PRK09874        168 --SY---------GLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKE-MLHM--------------------REVVTSL  215 (408)
T ss_pred             --Hh---------CHHHHHHHHHHHHHHHHHHHHHHhccCcccccchh-hhHH--------------------HHHHHhC
Confidence              33         445444666665554433 3445565432211110 0000                    0112334


Q ss_pred             ccchhHHHH-HHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHH
Q 015396          280 KNWPLMSSI-IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (407)
Q Consensus       280 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (407)
                      ++++++... ....+..........+++.|..+...  +........+.+....+++..++.. ..+++.||+++|+.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~l~~~~~~~-~~g~l~dr~g~~~~~~  292 (408)
T PRK09874        216 KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAG--NVSNIAFISGMIASVPGVAALLSAP-RLGKLGDRIGPEKILI  292 (408)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhHH
Confidence            556554432 22233333333344455655544210  0011112345566666777777764 7889999999999988


Q ss_pred             HHHHHHHHHHhhhhHH
Q 015396          359 IAGVLTIPLLTSYPYI  374 (407)
Q Consensus       359 ~~~~~~~~~~~~~~~~  374 (407)
                      .+..+..+..+...+.
T Consensus       293 ~~~~~~~~~~~~~~~~  308 (408)
T PRK09874        293 TALIFSVLLLIPMSFV  308 (408)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8877766666554433

>PRK10054 putative transporter; Provisional

Probab=99.94  E-value=3.8e-25  Score=206.35  Aligned_cols=284  Identities=14%  Similarity=0.179  Sum_probs=212.2

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      +.++.+....++...+.+...|.+|.+ .+++|.+..+      .|++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~   80 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL------IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAI   80 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHH
Confidence            345566677888888888999988854 5789999999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 015396          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (407)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (407)
                      ++..++.++.+++++++.+++.|.+.|.+.+...+. .++..|.+|+++|++++++.....++|.+++|.+++++.+   
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~---  157 (395)
T PRK10054         81 TAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM---  157 (395)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence            999999999999999999999998888876666665 8899999999999999999999999999999999998864   


Q ss_pred             CCCCcccccccccCCCChhHHHHHHHHHHHHHH-HHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccc
Q 015396          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (407)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (407)
                           .||+         .++.+.++..++.++ ..+++||+++++++++   +                   +....++
T Consensus       158 -----~g~~---------~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~---~-------------------~~~~~~~  201 (395)
T PRK10054        158 -----QSIN---------LPFWLAAICSAFPLVFIQIWVQRSEKAIATET---G-------------------SVWSPSV  201 (395)
T ss_pred             -----hccC---------cHHHHHHHHHHHHHHHHHHHHhccccccccch---h-------------------hhhhhhh
Confidence                 2344         444666665555433 3344565432211100   0                   0012256


Q ss_pred             ccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHH
Q 015396          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (407)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  357 (407)
                      .+++++++...+..++.......+..+.+.|....   .+.+.+....+.+.....+.....+. ..+++.||.++|+.+
T Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~l  277 (395)
T PRK10054        202 LLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV---ADSDFAEKVVAVVLPVNAAMVVSLQY-SVGRRLNAANIRPLM  277 (395)
T ss_pred             hccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh---cccchHHHHHHHHHHhhhhheeeehh-HHHHHHccCCchhHH
Confidence            78888888777666665555444444555554321   12566777788888888777777664 666777889999988


Q ss_pred             HHHHHHHHHHHhhhhH
Q 015396          358 RIAGVLTIPLLTSYPY  373 (407)
Q Consensus       358 ~~~~~~~~~~~~~~~~  373 (407)
                      ..+..+..++...+.+
T Consensus       278 ~~~~~~~~~~~~~~~~  293 (395)
T PRK10054        278 TAGTLCFVIGLVGFIF  293 (395)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888777776665543

>TIGR00896 CynX cyanate transporter

Probab=99.94  E-value=6.9e-25  Score=202.28  Aligned_cols=267  Identities=15%  Similarity=0.086  Sum_probs=202.1

Q ss_pred             hhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccch
Q 015396           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (407)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~  134 (407)
                      .....+.|.+|.+.+++|.++++      .+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.+ .+++
T Consensus        14 ~~~~~~~~~lp~l~~~~~~s~~~------~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~   86 (355)
T TIGR00896        14 PALTSVGPLLPQIRSALGMSFSV------AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPG   86 (355)
T ss_pred             CccccCcccHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhcc
Confidence            34467789999999999999999      9999999999999999999999999999999999998888888777 7788


Q ss_pred             HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCC
Q 015396          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (407)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (407)
                      .+.+++.|++.|++.+...+. ..++.|++| ++|++++++.+.+.++|..+++.+++.+.+       ..+       .
T Consensus        87 ~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~-------~~~-------~  151 (355)
T TIGR00896        87 TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQ-------HSG-------G  151 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhh-------h
Confidence            999999999999998876664 778888886 689999999999999999999999998876       111       1


Q ss_pred             CChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHH
Q 015396          214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (407)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (407)
                      +|+..+...++..++..  ..++|+.+++++++++                     ......++.+|+|.++...+..++
T Consensus       152 ~w~~~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~  208 (355)
T TIGR00896       152 HWQQALAWWALPALLAL--LAWIPQVRRRVAANQT---------------------TTRLTPVRIWRSPLAWQVTVFFGL  208 (355)
T ss_pred             hHHHHHHHHHHHHHHHH--HHHhhhhccccCCCCC---------------------CCCCCCchhhcCHhHHHHHHHHHH
Confidence            24444455444333222  2334544322111000                     011234567788888877666666


Q ss_pred             HhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHh-chhHHHHHHHHHHHHHHhhhh
Q 015396          294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSYP  372 (407)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~  372 (407)
                      ..........+.|.|..+      .|++..+.+.+.+...++.++++. ..+++.||+ ++|+.+..+..+..++...+.
T Consensus       209 ~~~~~~~~~~~lp~~~~~------~g~~~~~~g~~~~~~~~~~i~~~~-~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  281 (355)
T TIGR00896       209 QSGLYYSLIGWLPAILIS------HGASAATAGSLLALMQLAQAASAL-LIPALARRVKDQRGIVAVLAVLQLVGLCGLL  281 (355)
T ss_pred             HHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence            666666677788888764      688999999999999999999985 888999999 456666666666666655444


Q ss_pred             H
Q 015396          373 Y  373 (407)
Q Consensus       373 ~  373 (407)
                      +
T Consensus       282 ~  282 (355)
T TIGR00896       282 F  282 (355)
T ss_pred             H
Confidence            3

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.8e-25  Score=208.62  Aligned_cols=276  Identities=17%  Similarity=0.246  Sum_probs=221.0

Q ss_pred             HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHh
Q 015396           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLG  146 (407)
Q Consensus        69 ~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G  146 (407)
                      .+++.+.++      .+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++...+.  +++.+++.|+++|
T Consensus        66 ~~~~ws~~~------k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqG  139 (466)
T KOG2532|consen   66 GEYDWSSTE------KGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQG  139 (466)
T ss_pred             ceecCCHHH------HHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhH
Confidence            357777777      99999999999999999999999999999999999999999999998865  4568899999999


Q ss_pred             hhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHH
Q 015396          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLF  225 (407)
Q Consensus       147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  225 (407)
                      ++.|...|+ ..+.+.|.|++||++..++...+..+|.+++-+++|++.+.      .+||+++|         ++.++.
T Consensus       140 l~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s------~~GW~sif---------Y~~g~~  204 (466)
T KOG2532|consen  140 LGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES------SLGWPSIF---------YVFGIV  204 (466)
T ss_pred             HHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc------CCCCchHH---------HHHHHH
Confidence            999998886 99999999999999999999999999999999999999982      25555555         888888


Q ss_pred             HHHHHHHHh-ccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhH
Q 015396          226 AFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEI  304 (407)
Q Consensus       226 ~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (407)
                      +++..++++ +..|+|.+++.-.+++.   +.+++...+.. .+++.+.+++++++++.+|...+..+........+..+
T Consensus       205 g~i~~~~w~~~~~d~P~~h~~is~~El---~~I~~~k~~~~-~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y  280 (466)
T KOG2532|consen  205 GLIWFILWFLFYSDSPSKHPNISEKEL---KYIEKGKSEAH-VKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTY  280 (466)
T ss_pred             HHHHHHHHHHHhcCCcccCCCCCHHHH---HHHHhcccccc-cCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887666654 44566655433222111   11111111111 11115678999999999999999999999999999999


Q ss_pred             HhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhch---------hHHHHHHHHHHHHHHhhhhHHH
Q 015396          305 FSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP---------IMVARIAGVLTIPLLTSYPYIA  375 (407)
Q Consensus       305 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  375 (407)
                      .|.|+.+.     +|++..+.|++.++..+...+..+ +.+.++||..+         |..-.++....++.++.+++..
T Consensus       281 ~PtY~~~V-----L~f~v~~~G~~salP~l~~~~~k~-~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~  354 (466)
T KOG2532|consen  281 LPTYLKEV-----LGFDVRETGFLSALPFLAMAIVKF-VAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTS  354 (466)
T ss_pred             hhHHHHHH-----hCCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecC
Confidence            99999988     899999999999999999999985 88999998755         2333355555566666655554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.94  E-value=4e-24  Score=198.91  Aligned_cols=281  Identities=15%  Similarity=0.155  Sum_probs=210.7

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHH----HHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVI----IMGTA  120 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~----~~~~~  120 (407)
                      .+....+..+...+...|++|.+.+++|.+..+      +|++.+++.+...++++++|+++||+|||+..    ..+..
T Consensus         8 ~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~------ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~   81 (382)
T TIGR00902         8 WLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEM------IGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASA   81 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            355667777778899999999999999999999      99999999999999999999999999985433    22222


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 015396          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (407)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (407)
                      +..+  ..+..+++++.+++.|+++|.+.+...|. .++..++  +++|++.++......++|.+++|++++.+.+    
T Consensus        82 l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~----  153 (382)
T TIGR00902        82 IFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG----  153 (382)
T ss_pred             HHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH----
Confidence            2222  23446789999999999999887766665 6666554  4788999999999999999999999999998    


Q ss_pred             CCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccccc
Q 015396          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLL  279 (407)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (407)
                         .+|||..|         .+..+..++.++ .+.++|++++.+++++  +                +.+..+..++++
T Consensus       154 ---~~g~~~~f---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~----------------~~~~~~~~~~~l  202 (382)
T TIGR00902       154 ---MFDEQNIL---------AILTAGLAFMLI-GFLIKPTIPPKDAIPE--D----------------ESQGDSAFIALL  202 (382)
T ss_pred             ---HcChhHHH---------HHHHHHHHHHHH-HHHcCCCCCCCccccc--c----------------ccccchhHHHHH
Confidence               45555444         554443322222 2233333211111000  0                001122456788


Q ss_pred             ccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHH
Q 015396          280 KNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (407)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  359 (407)
                      |+|+++...+..++.......+..+.+.|+++      .|.+..++|.++....++.++.. ...+++.||+++|+.+.+
T Consensus       203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~------~g~s~~~~g~l~~~~~~~~i~~~-~~~~~l~~r~g~~~~l~~  275 (382)
T TIGR00902       203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA------AGISASATGLLWGIGVLAEIIIF-AFSNKLFQNCSARDLLLI  275 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHH-HHhHHHHhhCCHHHHHHH
Confidence            99999999888888888888888888888865      78999999999998888888886 488999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHhh
Q 015396          360 AGVLTIPLLTSYPYIAML  377 (407)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~  377 (407)
                      +.+...+....+++.++.
T Consensus       276 ~~~~~~~~~~~~~~~~~~  293 (382)
T TIGR00902       276 SAIACVGRWAIIGAIEAF  293 (382)
T ss_pred             HHHHHHHHHHHHHhHhhH
Confidence            999998888877665543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.94  E-value=1.8e-24  Score=202.30  Aligned_cols=275  Identities=15%  Similarity=0.122  Sum_probs=194.8

Q ss_pred             HHhhhhhhchhhhHHHHHHhhcc--cccccchhhHHHHHHH-----HHHHHHHHhhhhhhhcccccCChHHHHHHHHHHH
Q 015396           51 LCTALPISSLFPFLYFMIKDFQI--AKREEDIGSYAGYVGS-----SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~g~~~~-----~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~  123 (407)
                      +.++++...+.+..+.+.+++..  ++++      .+...+     ...++..+++++.|+++||+|||+++..+.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~   76 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPL------VALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMG   76 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChH------HHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence            45677788888888888877654  3333      344333     3344456789999999999999999999999999


Q ss_pred             HHHHHhhccchHH--------HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          124 IFNTLFGLSVNFW--------MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       124 ~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      ++.++++++++++        .+++.|+++|++.+...+. .+++.|++|+++|++..+..+.+..+|..+++.++..+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~  156 (394)
T TIGR00883        77 IGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS  156 (394)
T ss_pred             HHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988865        4889999999998887665 999999999999999999999999999999999887765


Q ss_pred             CCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccc
Q 015396          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (407)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (407)
                      ...       +.... ..++|+.++.+.++..++..+.....||++++.+++++                   +++...+
T Consensus       157 ~~~-------~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~  209 (394)
T TIGR00883       157 YLL-------GDDAL-LEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK-------------------HKKKRGP  209 (394)
T ss_pred             Hhc-------CHHHh-hccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc-------------------cccccCC
Confidence            311       10000 04567777677666655555444455654432111000                   0011223


Q ss_pred             cccccccch--hHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 015396          275 KKSLLKNWP--LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (407)
Q Consensus       275 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (407)
                      .++.+++++  ++......++..........+.|.|..+.     +|.+..+.+.......++..++.. +.+++.||++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~dr~g  283 (394)
T TIGR00883       210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-----LGLSANSALLVLMLSLILFFITIP-LSGALSDRIG  283 (394)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence            444555544  55555555555555556666778777554     688888999999988999988875 8899999999


Q ss_pred             hhHHHHHHHHHH
Q 015396          353 PIMVARIAGVLT  364 (407)
Q Consensus       353 ~~~~~~~~~~~~  364 (407)
                      +|+.+..+..+.
T Consensus       284 ~~~~~~~~~~~~  295 (394)
T TIGR00883       284 RRPVLIIFTVLA  295 (394)
T ss_pred             hHHHHHHHHHHH
Confidence            998776554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.93  E-value=2.9e-24  Score=197.56  Aligned_cols=290  Identities=24%  Similarity=0.390  Sum_probs=233.2

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~  124 (407)
                      .+....+...+......+..|.+.+++|.+..+      .+++.+...++..+++++.|+++||+|||+.+..+.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~   76 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQ------AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL   76 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHH
Confidence            345567778888889999999999999999998      99999999999999999999999999999999999999999


Q ss_pred             HHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 015396          125 FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL  203 (407)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~  203 (407)
                      +.+...+.++++.+++.|++.|++.+...+. .+++.|++|+|+|++.+++.+....+|..++|.+++.+.+        
T Consensus        77 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------  148 (352)
T cd06174          77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE--------  148 (352)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            9999999999999999999999998887775 9999999999999999999999999999999999999987        


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccch
Q 015396          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP  283 (407)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (407)
                              ..+|+..+.+.++..++..+...+++                                            |.
T Consensus       149 --------~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~  176 (352)
T cd06174         149 --------SLGWRWLFLILAILGLLLALLLLFLL--------------------------------------------RL  176 (352)
T ss_pred             --------HhhHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------HH
Confidence                    33455555776666665555444444                                            34


Q ss_pred             hHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhH-HHHHHHH
Q 015396          284 LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIM-VARIAGV  362 (407)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~  362 (407)
                      ++...+..++..........+.+.+..+.     .|.+..+.+.......++..++.. +.+++.||+++|+ .+..+..
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~  250 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEV-----LGLSAAEAGLLLSLFGLGGILGAL-LGGLLSDRLGRRRLLLLIGLL  250 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHH
Confidence            56666777777777777777888777664     588999999999999999999985 8889999999999 8888888


Q ss_pred             HHHHHHhhhhHHHhhhhhhhHhh-hh-----hhHHHHHHHhhcCCCCCCC
Q 015396          363 LTIPLLTSYPYIAMLSGFGLAFL-LN-----CASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~p~~~rs  406 (407)
                      +..++...+...+.......... .+     ..........+..|++.|+
T Consensus       251 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (352)
T cd06174         251 LAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARG  300 (352)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHH
Confidence            88888777665543221111111 11     1123455667777766653

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00901 2A0125 AmpG-related permease

Probab=99.93  E-value=4.1e-24  Score=197.22  Aligned_cols=310  Identities=12%  Similarity=0.157  Sum_probs=214.0

Q ss_pred             hhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc-----CChHH-HHHHHHHHHHHHHHh
Q 015396           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV-IIMGTASVVIFNTLF  129 (407)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----Grr~~-~~~~~~~~~~~~~~~  129 (407)
                      ....+.+.+|.+.+|+|+|.++      .|+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++.....
T Consensus         3 ~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l   74 (356)
T TIGR00901         3 PLGLVGNTLPYWLRSKNVSLKT------IGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL   74 (356)
T ss_pred             CchhHHhHHHHHHHHcCCCHHH------HHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            3456778899999999999999      9988655 444444 99999999998     89887 466777777776666


Q ss_pred             hcc---chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccc
Q 015396          130 GLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (407)
Q Consensus       130 ~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g  205 (407)
                      ++.   .+.+.+....++.+++.+...+. .+++.|++|+|+|+++.++...+.++|.++++.+++.+.+       .+|
T Consensus        75 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~-------~~g  147 (356)
T TIGR00901        75 SFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS-------PEF  147 (356)
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh-------hcc
Confidence            666   46667777777888877777675 9999999999999999999999999999999999999987       333


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHHHHh-ccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccch-
Q 015396          206 SESLFGKFPYFLPCLCISLFAFGVTIAAF-WLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWP-  283 (407)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  283 (407)
                      ... +.+++||.++++.++..++..+..+ ..||+.+..+. ++ ++..                +.....+++++++. 
T Consensus       148 ~~~-~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~-~~-~~~~----------------~~~~~~~~~~~~~~~  208 (356)
T TIGR00901       148 ANT-GLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASV-PK-PLTQ----------------AVLKPIREFFQRKNM  208 (356)
T ss_pred             ccc-ccccccHHHHHHHHHHHHHHHHHHHHhccCCCccccc-ch-hHHH----------------HHHHHHHHHHHhcCc
Confidence            222 1255688888888887766555544 34664321111 00 0000                00113345566654 


Q ss_pred             --hHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHH-HHHHHHHhHHHHHHHHhchhHHHHHH
Q 015396          284 --LMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIMVARIA  360 (407)
Q Consensus       284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (407)
                        ++...+..++..........+.+.|..+      +|++..+.+.+....+. +.+++. ++++++.||+++|+.+..+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~g~~~~~~g~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~  281 (356)
T TIGR00901       209 IQALLLLLLIVLYKLGDSAATVLTTLFLLD------MGFSKEEIALVAKINGLLGAILGG-LIGGIIMQPLNILYALLLF  281 (356)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHH
Confidence              5556666666666666677778877754      68899999988887774 555665 5889999999999998888


Q ss_pred             HHHHHHHHhhhhHHH-hh-------hhhh-hHhhh--------hhhHHHHHHHhhcCCCCCCC
Q 015396          361 GVLTIPLLTSYPYIA-ML-------SGFG-LAFLL--------NCASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       361 ~~~~~~~~~~~~~~~-~~-------~~~~-~~~~~--------~~~~~~~~~~~~~~p~~~rs  406 (407)
                      .++.++....+.+.. ..       ...+ .....        ...........+.+|++.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g  344 (356)
T TIGR00901       282 GIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGA  344 (356)
T ss_pred             HHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccH
Confidence            877776666544431 10       1111 11111        12234567789999998875

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.93  E-value=1.3e-23  Score=195.47  Aligned_cols=275  Identities=14%  Similarity=0.126  Sum_probs=202.2

Q ss_pred             HHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCCh----HHHHHHHHHHHHH
Q 015396           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK----PVIIMGTASVVIF  125 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr----~~~~~~~~~~~~~  125 (407)
                      .+......+++.|.+|.+.+++|.|..+      +|++.+++.++..+++++.|+++||+|||    +.+.+...+.  .
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~------iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~   84 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPET------IGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--A   84 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHH------HHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--H
Confidence            4455566788999999999999999999      99999999999999999999999999994    3333222222  2


Q ss_pred             HHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 015396          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (407)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  204 (407)
                      .......+++|.+++.|++.|++.+...+. .++..++  +++|+++++......++|.++||++++++.+         
T Consensus        85 ~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~---------  153 (382)
T PRK11128         85 VAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS---------  153 (382)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH---------
Confidence            223344688999999999999987777775 6676666  4568888999999999999999999999998         


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchh
Q 015396          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPL  284 (407)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (407)
                             +++|+.++++.++..++..+..++.||.+++.++++   +                .++...++++++|+|++
T Consensus       154 -------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~~~~~~~~i~~~~~~  207 (382)
T PRK11128        154 -------WFGEQAILWILTAGVASMLLGQLLRPTIMPQGESRQ---Q----------------ESAGWPAWKALLKEPTV  207 (382)
T ss_pred             -------HcChhHHHHHHHHHHHHHHHHHHccCCCCCcccccc---c----------------cccccchHHHHHcChhH
Confidence                   444555556665544444333344454322111000   0                00112356788999999


Q ss_pred             HHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHH
Q 015396          285 MSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT  364 (407)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  364 (407)
                      +...+..++..........+.+.|..+      .|++..+.|.+.+...++.++... ..+++.||+++++.+..+....
T Consensus       208 ~~~~~~~~l~~~~~~~~~~~~~~~~~~------~g~s~~~~g~~~~~~~~~~~~~~~-~~g~l~~r~~~~~~l~~~~~~~  280 (382)
T PRK11128        208 WRFLLCVSLLQGSHAAYYGFSAIYWQA------AGYSASTIGYLWSLGVVAEVLIFA-FSNRLFRRWSARDLLLLSAICG  280 (382)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHH------CCCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHH
Confidence            988777777766666677777877753      688999999999988888888774 7889999999999998888887


Q ss_pred             HHHHhhhhHHHh
Q 015396          365 IPLLTSYPYIAM  376 (407)
Q Consensus       365 ~~~~~~~~~~~~  376 (407)
                      ++..+.+.+.++
T Consensus       281 ~~~~~~~~~~~~  292 (382)
T PRK11128        281 VVRWGLMGSTTA  292 (382)
T ss_pred             HHHHHHHHhhhh
Confidence            777666555443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=4.5e-24  Score=205.63  Aligned_cols=331  Identities=15%  Similarity=0.128  Sum_probs=211.6

Q ss_pred             hhchhhhHHHHHHhhcccccccchh-hHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchH
Q 015396           57 ISSLFPFLYFMIKDFQIAKREEDIG-SYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (407)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~  135 (407)
                      .....+....+.+....+....... ...+++.+...++..+++++.|+++|++|||+.++++.+.+.++.+++++++|+
T Consensus        63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~  142 (513)
T KOG0254|consen   63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW  142 (513)
T ss_pred             cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            4555666666665432222111000 114899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCC
Q 015396          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (407)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (407)
                      ++++++|+++|+|.|..... +.+++|..|++.||...+..+....+|..++..++....+       .        .++
T Consensus       143 ~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~-------~--------~~~  207 (513)
T KOG0254|consen  143 YQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK-------V--------YAG  207 (513)
T ss_pred             HHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc-------C--------Ccc
Confidence            99999999999998887665 9999999999999999999999999999999655555443       0        135


Q ss_pred             ChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhh--hhhhh--chhhhh-----------hhhc-ccccccccc
Q 015396          215 YFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALES--ASAEVK-----------EEEG-REATPKKSL  278 (407)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~--~~~~~~-----------~~~~-~~~~~~~~~  278 (407)
                      ||.++.+..+.+++..+..+++||+|++..++.+..+...  ..+..  ..+...           +... +.+..++++
T Consensus       208 Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  287 (513)
T KOG0254|consen  208 WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGEL  287 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHh
Confidence            7777788888888877778899999988655433322221  11111  000000           0000 111123344


Q ss_pred             cccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHH
Q 015396          279 LKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR  358 (407)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  358 (407)
                      ++........+...+..+.+.+.......|..+.  .+..|.+... .......++...++.. ++..+.||+|||+++.
T Consensus       288 ~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i--f~~~g~~~~~-~~~~~~~~~v~~~~t~-~~~~lvd~~gRr~lll  363 (513)
T KOG0254|consen  288 FSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI--FKSAGLKSDT-FLASIILGVVNFLGTL-VATYLVDRFGRRKLLL  363 (513)
T ss_pred             cCcchHHHHHHHHHHHHHHHHhCCceEEeehHHH--HHhcCCCCch-HHHHHHHHHHHHHHHH-HHHHHHHHhccHHHHH
Confidence            4422222233333333333332222222222222  2224444332 3444445555556553 6689999999999999


Q ss_pred             HHHHHHHHHHhhhhHHHhhhhh---------hh----------HhhhhhhHHHHHHHhhcCCCCCCC
Q 015396          359 IAGVLTIPLLTSYPYIAMLSGF---------GL----------AFLLNCASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~---------~~----------~~~~~~~~~~~~~~~~~~p~~~rs  406 (407)
                      .+...+.++.+++.........         +.          ....+..+..+...+|.+|.+.|+
T Consensus       364 ~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~  430 (513)
T KOG0254|consen  364 FGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRS  430 (513)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHh
Confidence            9999988888876544322110         00          011111223345779999998886

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.92  E-value=1.7e-22  Score=188.77  Aligned_cols=273  Identities=15%  Similarity=0.203  Sum_probs=181.5

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHH-HHHhhcccccccchhhHHHHHHHHHHH-HHHHhhhhhhhcccccCChHHH-HHHHH
Q 015396           44 FSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVI-IMGTA  120 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~Grr~~~-~~~~~  120 (407)
                      ....+..++..+......|.+|. +.+++|.++++      .|++.+...+ +..++.++.|+ +||+||||.+ ..+.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~   90 (393)
T PRK15011         18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAM------VGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCL   90 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHH
Confidence            34555677888888888899985 56889999999      9999876655 55555555555 9999999875 45566


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchh--hhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQA--LGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      ...++..+.+++++++.+++.+.+.|...+...+. ..+..|+.++++|.  ...++.+.+.++|.++||++++++.+  
T Consensus        91 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~--  168 (393)
T PRK15011         91 LGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM--  168 (393)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH--
Confidence            66677777888899998876665555444455664 77888887766553  44578888999999999999999998  


Q ss_pred             CCCCCcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccc
Q 015396          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (407)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (407)
                                    .++|+..++..++..++.. ...+++||.++.++..++  + .           +        ..+
T Consensus       169 --------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-----------~--------~~~  212 (393)
T PRK15011        169 --------------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG--T-L-----------E--------APR  212 (393)
T ss_pred             --------------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc--c-c-----------c--------ccc
Confidence                          3445555577776655543 335567776432211100  0 0           0        000


Q ss_pred             cccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHH
Q 015396          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV  356 (407)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  356 (407)
                      +  +.+..+.......+.......+..+.|.|+++.     +|++..+.+.+.+...++.+++. ++.+++.||+++|+.
T Consensus       213 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-----~~~~~~~~g~~~~~~~~~~i~~~-~~~G~l~dr~g~~~~  284 (393)
T PRK15011        213 R--NRRDTLLLFVICTLMWGTNSLYIINMPLFIINE-----LHLPEKLAGVMMGTAAGLEIPTM-LIAGYFAKRLGKRFL  284 (393)
T ss_pred             c--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHH
Confidence            0  112223333333333334444555677777654     78888889988887777777776 488999999999988


Q ss_pred             HHHHHHHHHHHHh
Q 015396          357 ARIAGVLTIPLLT  369 (407)
Q Consensus       357 ~~~~~~~~~~~~~  369 (407)
                      +..+.....+.+.
T Consensus       285 ~~~~~~~~~~~~~  297 (393)
T PRK15011        285 MRVAAVAGVCFYA  297 (393)
T ss_pred             HHHHHHHHHHHHH
Confidence            7766555544433

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.92  E-value=9.7e-23  Score=194.94  Aligned_cols=282  Identities=13%  Similarity=0.156  Sum_probs=203.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc-----CChHH
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPV  114 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----Grr~~  114 (407)
                      +++...++...+..+.......+.+|.+.++.|.+.++      +|.+ +.....+ ++.+++|+++||+     ||||.
T Consensus        11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~------ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~   82 (491)
T PRK11010         11 QPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKT------IGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRG   82 (491)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchH
Confidence            34566677777888888889999999999999999888      8886 3333443 6899999999999     99885


Q ss_pred             -HHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 015396          115 -IIMGTASVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (407)
Q Consensus       115 -~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  189 (407)
                       +..+.++.+++...+++.   ++++.+.+.+++.|++.+...+. .++..|++|+++|+++.++...+..+|..+++.+
T Consensus        83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l  162 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGL  162 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             667777777777666664   57888999999999988777775 9999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhc
Q 015396          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (407)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (407)
                      ++++.+       .        .++||.++++.++..++..+..++.||+++..+. +++.+                 +
T Consensus       163 ~~~l~~-------~--------~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~~~-~~~~~-----------------~  209 (491)
T PRK11010        163 ALWLAD-------R--------YLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPV-PKTLE-----------------Q  209 (491)
T ss_pred             HHHHHh-------c--------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccc-ccchh-----------------h
Confidence            999986       1        1355666677777766665555567775432111 00000                 0


Q ss_pred             ccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHH-HHHHHHHHHHHhHHHHHH
Q 015396          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLA-ITGFSLLVFQLSLYPFLE  348 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~-~~~~~~~~~~~~~~~~l~  348 (407)
                      +...+.++.++++..+...+..++..........+.+.|+.+.     +|++..+.+.... ...++.+++. ++++++.
T Consensus       210 ~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-----~G~s~~~~g~~~~~~g~i~~iiG~-ll~G~L~  283 (491)
T PRK11010        210 AVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-----VGFDAGEVGLVNKTLGLLATIVGA-LYGGILM  283 (491)
T ss_pred             hHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            0011344566667666655555555544444455566565433     7899999999875 4456777777 5899999


Q ss_pred             HHhchhHHHHHHHHHHHHHH
Q 015396          349 RILGPIMVARIAGVLTIPLL  368 (407)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~  368 (407)
                      ||+++++.+.++.++..+..
T Consensus       284 dr~g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        284 QRLSLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHhHHHHHHHHHHHHHHHH
Confidence            99999887776665544433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.92  E-value=1.7e-22  Score=189.39  Aligned_cols=276  Identities=14%  Similarity=0.203  Sum_probs=200.7

Q ss_pred             HHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc-----CChH-HHHHHHH
Q 015396           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKP-VIIMGTA  120 (407)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----Grr~-~~~~~~~  120 (407)
                      ...++..+...+.....+|.+.++.|.+.++      +|++..+...  .+..+++|+++||+     |||| .+.++.+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~------ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~   76 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQT------IGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQV   76 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHH
Confidence            4456677788888899999999999999999      9999777665  58999999999999     8875 6888888


Q ss_pred             HHHHHHHHhhcc---chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCC
Q 015396          121 SVVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (407)
Q Consensus       121 ~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (407)
                      +.+++....++.   .+++.+++..++.++..+...+. .+++.|++|+|+|+++.++...+..+|..+++.+++.+.+ 
T Consensus        77 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~-  155 (402)
T PRK11902         77 GLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD-  155 (402)
T ss_pred             HHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh-
Confidence            887777776665   45777888878888777777775 9999999999999999999999999999999999999886 


Q ss_pred             CCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccc
Q 015396          197 AEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKK  276 (407)
Q Consensus       197 ~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (407)
                            .        .++|+.++++.++..++..+..+++||++++.+++++..+                  +.....+
T Consensus       156 ------~--------~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~~~~~~~~~------------------~~~~~~~  203 (402)
T PRK11902        156 ------R--------VLGWGNTYLLMAGLMLAGALTTLWAPEPEVPARPPRSLGE------------------AVVGPLR  203 (402)
T ss_pred             ------c--------ccCHHHHHHHHHHHHHHHHHHHHhcCCCcccccccchhHH------------------HHHHHHH
Confidence                  1        1255666677777666555555666765443211110000                  0112456


Q ss_pred             cccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHH-HHHHHHHhHHHHHHHHhchhH
Q 015396          277 SLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF-SLLVFQLSLYPFLERILGPIM  355 (407)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  355 (407)
                      +++++|.++...+..++..........+.+.++.+.     +|+++.+.+.+....++ +.+++. .+.+++.||+++|+
T Consensus       204 ~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-----~G~~~~~~g~~~~~~~~~~~i~g~-~~~g~l~~r~g~~~  277 (402)
T PRK11902        204 DFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRG-----AGFSAGEVGIVNKTLGLAATIVGA-LAGGTLMVRLGLYR  277 (402)
T ss_pred             HHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHH
Confidence            788999888777666665544333323333333332     78999999998876655 466666 58999999999998


Q ss_pred             HHHHHHHHHHHHHh
Q 015396          356 VARIAGVLTIPLLT  369 (407)
Q Consensus       356 ~~~~~~~~~~~~~~  369 (407)
                      .+..+..+..+..+
T Consensus       278 ~l~~~~~~~~l~~l  291 (402)
T PRK11902        278 SLMLFGVLQAVSNL  291 (402)
T ss_pred             HHHHHHHHHHHHHH
Confidence            87766665554443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=1.1e-22  Score=179.02  Aligned_cols=304  Identities=17%  Similarity=0.176  Sum_probs=240.4

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      ++..+..+....++.++......+.+|.+++.++++..+      .+++..+++.++.+.+++.|++.+|+|+|+.++.+
T Consensus        11 ~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lg   84 (422)
T COG0738          11 VKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLG   84 (422)
T ss_pred             ceeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHH
Confidence            334556677778888888999999999999999999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh---ccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          119 TASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       119 ~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      +.++++++.++.   ...++..++++-++.|.|.+...+. +.+++...|++.-.+.+++.+...++|.+++|++++.+.
T Consensus        85 L~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738          85 LLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            999999999884   5678899999999999999998885 999999999988889999999999999999999999998


Q ss_pred             CCC----CCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhc--cccCCCCCCCCcchhhhhhhhhhhchhhhhhhh
Q 015396          195 QPA----EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESASAEVKEEE  268 (407)
Q Consensus       195 ~~~----~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (407)
                      .+.    .+-.....|+... --.++.++...+...++..+....  .|+.+...+++.+                    
T Consensus       165 ls~~~~~~~~~~~~~~~~~~-~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~--------------------  223 (422)
T COG0738         165 LSGVALTMSAAQILAIKGAD-ASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA--------------------  223 (422)
T ss_pred             HhhhhhccCHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc--------------------
Confidence            621    0000111122211 122555666666554444433332  2322221111110                    


Q ss_pred             cccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 015396          269 GREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLE  348 (407)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~  348 (407)
                       +......+++++|+++...+..+++...+....++++.|..+.     .|.+..+.+...+..-.+.++|+ +++.++.
T Consensus       224 -~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-----~g~~~~~aa~~~s~~~~~~~vGR-Fig~~lm  296 (422)
T COG0738         224 -SGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-----LGLNEQQAAYYLSFFWVGFMVGR-FIGSALM  296 (422)
T ss_pred             -cccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence             0111567889999999999999999999999999999999886     78899999999999999999998 4888888


Q ss_pred             HHhchhHHHHHHHHHHHHHHhhhhHHHh
Q 015396          349 RILGPIMVARIAGVLTIPLLTSYPYIAM  376 (407)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (407)
                      +|+...+.+....+...+.++...+.+.
T Consensus       297 ~~~~~~k~Laf~a~~~ill~~~~~l~~g  324 (422)
T COG0738         297 SRIKPEKYLAFYALIAILLLLAVALIGG  324 (422)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8999999988887777777666655554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.92  E-value=6.2e-23  Score=217.13  Aligned_cols=336  Identities=18%  Similarity=0.136  Sum_probs=221.3

Q ss_pred             HHHHHHHHHHHHhhhhhh-chhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPIS-SLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      +.+..+++..++..+... ....+.+.+..+++.+...    ...+++.+++.++..++++++|+++||+|||++++++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~   84 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQV----ILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVK   84 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHH
Confidence            344445555555554443 3344445666666654332    23789999999999999999999999999999999888


Q ss_pred             HHHHHHHHHhh---ccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          120 ASVVIFNTLFG---LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       120 ~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ++.++..++..   .+++++.++++|++.|++.+...+. .+++.|++|+++|++++++...+..+|.++||++++++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633         85 LFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            76665554433   4578999999999999999988886 9999999999999999999999999999999999999986


Q ss_pred             CCC-CCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccc
Q 015396          196 PAE-KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (407)
Q Consensus       196 ~~~-~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (407)
                      ... .....++       +.++..+++.....++.++..+.+||.++.....++..+..             ........
T Consensus       165 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~  224 (1146)
T PRK08633        165 SVNGNTPSEIL-------GRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYL-------------FPKLLWRN  224 (1146)
T ss_pred             hhccccccccc-------cchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccc-------------cHHHHHHH
Confidence            200 0000011       11122222233333334444556677654432211000000             00001123


Q ss_pred             cccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchh-hHHHHHHHHHHHHHHHHHhHHHHHHHHhch
Q 015396          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ-MVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (407)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (407)
                      ++.+++++.++...+..++..........++|.|....     +|++.. +.+++.+..+++.+++.. +.+++.||+++
T Consensus       225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~~g~~~~~~~ig~~~g~~-~~g~l~~r~~~  298 (1146)
T PRK08633        225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEV-----LGLDNTFQVQYLLAASAIGIGIGSL-LAGRLSGRHIE  298 (1146)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-----hCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHhCCceE
Confidence            45677888888777766666666666666777777655     788888 899999999999999885 88999999998


Q ss_pred             hHHHHHHHHHHHHHHhhhhHHHhhhhhhhH-hhhhh-----hHHHHHHHhhcCCCCCCC
Q 015396          354 IMVARIAGVLTIPLLTSYPYIAMLSGFGLA-FLLNC-----ASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~p~~~rs  406 (407)
                      ++.+.++.++.+++.+.+.+.......... +..+.     .........+..|++.|+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg  357 (1146)
T PRK08633        299 LGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELG  357 (1146)
T ss_pred             ccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchh
Confidence            888877777776666655544322211111 11111     112345566777877765

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.2e-24  Score=189.91  Aligned_cols=289  Identities=17%  Similarity=0.182  Sum_probs=221.8

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcc----------------------------------------------ccccc
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQI----------------------------------------------AKREE   78 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------s~~~~   78 (407)
                      .+....+.+++......|.+|.+..+.+-                                              +...+
T Consensus        25 iv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~e  104 (464)
T KOG3764|consen   25 IVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLDRE  104 (464)
T ss_pred             EEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCcccc
Confidence            45666777777788888888877665541                                              11111


Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HH
Q 015396           79 DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KA  157 (407)
Q Consensus        79 ~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~  157 (407)
                        ..-+|++.+...+.+.+.+++.|.+.||+|+|..+++|.+.....++++++.++++.++++|.+||++.+...++ .+
T Consensus       105 --~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla  182 (464)
T KOG3764|consen  105 --NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA  182 (464)
T ss_pred             --ccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence              122899999999999999999999999999999999999999999999999999999999999999999998887 99


Q ss_pred             HHhhhcccc-chhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhcc
Q 015396          158 YACEIFREE-HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (407)
Q Consensus       158 ~~~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (407)
                      +++|.+|++ +|++++|+...+.++|..+||++||++.+                ..|...||++.+++.++...+.+++
T Consensus       183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe----------------~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYE----------------FAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHh----------------hcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            999999965 57999999999999999999999999999                5667788899998888866665554


Q ss_pred             ccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccC
Q 015396          237 PETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLG  316 (407)
Q Consensus       237 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (407)
                      -|..+..+...                      .+..+.++++++|+++.........+.........++.|..+.    
T Consensus       247 i~p~~~~~~~~----------------------~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~----  300 (464)
T KOG3764|consen  247 IEPTEMDPDST----------------------EQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET----  300 (464)
T ss_pred             eCccccCcccc----------------------ccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh----
Confidence            44322222111                      1233678899999988776665555555445555556665554    


Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc--hhHHHHHHHHHHHHHHhhhhHHHhhhh
Q 015396          317 GLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAMLSG  379 (407)
Q Consensus       317 ~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (407)
                       +.-+.-+.|..+....+...++.. +.+.+.||++  |......+.+..++++...++.+....
T Consensus       301 -m~~p~w~~G~~fLp~~~~y~ig~~-lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~  363 (464)
T KOG3764|consen  301 -MFTPGWEVGLAFLPASLSYAIGTN-LFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ  363 (464)
T ss_pred             -ccCCCcceeeeecccccchhccCc-hHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH
Confidence             453444788888889999999985 8899999999  555555566666666666666665444

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.91  E-value=1.1e-22  Score=193.08  Aligned_cols=294  Identities=21%  Similarity=0.240  Sum_probs=225.8

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      +.+.+..++.+.++..++..+.....+-+..+..-|+..      .+++..+..+...+.++++|.++||++|||+++.+
T Consensus         8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~------valv~~a~~LP~~Llsl~aG~laDr~drrrili~~   81 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLM------VALVQAASTLPILLLSLFAGALADRFDRRRILILS   81 (524)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence            345667788899999999999999999888777777777      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc-----cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 015396          119 TASVVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (407)
Q Consensus       119 ~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (407)
                      .++..+..+..++     ..+.|.+++.-++.|++.+...|+ .+++.|..|+++...++++.+...++...+||.++|.
T Consensus        82 ~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~  161 (524)
T PF05977_consen   82 QLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI  161 (524)
T ss_pred             HHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence            8877665544333     247899999999999999999998 9999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccc
Q 015396          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (407)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (407)
                      +..                ..+....+.+.++..++.+..+...+...+..+.+++   ..              .++-.
T Consensus       162 Lva----------------~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~e---~~--------------~~~l~  208 (524)
T PF05977_consen  162 LVA----------------FFGAAAAFLINALSFLISILALLRWKPPPPPSSLPRE---RF--------------FSALR  208 (524)
T ss_pred             HHH----------------HHHHHHHHHHHHHHHHHHHHHHHHccccccccccchh---hh--------------hhhHH
Confidence            987                3334444566666555544444444432221111110   00              00112


Q ss_pred             cccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 015396          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (407)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (407)
                      ...+.+.++|.++..+...++..+....+...+|.+..+.     +|.++...|++.+..+++++++++ +.+++.++++
T Consensus       209 ~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~-----l~~~a~~yGll~a~~gvGai~Gal-~~~~l~~~~~  282 (524)
T PF05977_consen  209 EGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV-----LGGGASGYGLLLAAFGVGAILGAL-LLPRLRRRLS  282 (524)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHH-HHHHhhcccC
Confidence            2445566677777666666666666566666778777665     788999999999999999999996 7888989999


Q ss_pred             hhHHHHHHHHHHHHHHhhhhHHHhh
Q 015396          353 PIMVARIAGVLTIPLLTSYPYIAML  377 (407)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~  377 (407)
                      +++++..+.+..+++++.+.+....
T Consensus       283 ~~~lv~~~~~~~a~~~~~lal~~~~  307 (524)
T PF05977_consen  283 SRRLVLLASLLFALALLLLALSPSF  307 (524)
T ss_pred             cchhhHHHHHHHHHHHHHHhcchHH
Confidence            8888888888888777776665543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.91  E-value=1.7e-22  Score=213.14  Aligned_cols=248  Identities=16%  Similarity=0.134  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH---HHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHH
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM---GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA  159 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~  159 (407)
                      .++..+++.+.+.++++++|+++||+|||+++..   ..+...+..+.....+++++++++|+++|++.+...|+ .+++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l  133 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL  133 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence            7888899999999999999999999999997643   22222222333334589999999999999999998886 9999


Q ss_pred             hhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccC
Q 015396          160 CEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (407)
Q Consensus       160 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (407)
                      .|++|+++|++++++.+++.++|.++||+++|++.+                ..+|+..+...++..++.++..+++|++
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI----------------SGNFVILVALLMGIAVLGWLASLFIPKT  197 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh----------------ccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999999999999999999998                3345544455555555555556667765


Q ss_pred             CCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccc
Q 015396          240 LHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN  319 (407)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  319 (407)
                      ++.....+......               ++....++.+.+++.++...+..++..+....+..++|.|+.+.     +|
T Consensus       198 ~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~g  257 (1140)
T PRK06814        198 GNAAPDLKIDRNII---------------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKET-----LG  257 (1140)
T ss_pred             CCCCCCCeeccchH---------------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----cC
Confidence            43222111100000               00112456678889999888888877777777777889888765     78


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHH
Q 015396          320 YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  368 (407)
Q Consensus       320 ~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  368 (407)
                      .++.+.|++.+..+++.+++.. +.+++.++..+++.+..+.++..+..
T Consensus       258 ~~~~~~g~~~~~~~~g~~ig~~-~~g~l~~~~~~~~~~~~~~~~~~~~~  305 (1140)
T PRK06814        258 GDENVATLFLAVFSVGVAVGSF-LASKLSEGRITLLYVPIGALLMGLFG  305 (1140)
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-HHHHHhCCceeeeeehHHHHHHHHHH
Confidence            8999999999999999999985 77888877666555554444444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.90  E-value=6e-22  Score=185.43  Aligned_cols=290  Identities=13%  Similarity=0.146  Sum_probs=195.1

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      .++.+....++.+.....+.|.+|.+ .+++|.++.+      .|++.+++.++..+++++.|+++||+|||+.++.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~   76 (396)
T TIGR00882         3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTD------TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS   76 (396)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            34556667778888888899999865 4578999999      9999999999999999999999999999999988766


Q ss_pred             HHHHHHHHh---hcc-----chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhh
Q 015396          121 SVVIFNTLF---GLS-----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (407)
Q Consensus       121 ~~~~~~~~~---~~~-----~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (407)
                      ..+++....   .+.     +..+.+++.+++.|++.+...+. ..+..|..  +++++.++......++|.+++|.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g  154 (396)
T TIGR00882        77 GLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAG  154 (396)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHh
Confidence            665544322   111     12344566788888887776664 66666643  33455677888888999999999999


Q ss_pred             hhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhc-cccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcc
Q 015396          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW-LPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (407)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (407)
                      .+.+                 ++|+.++++.++..++..+..+. .||+++++. ++   +..    +      ++++++
T Consensus       155 ~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~----~------~~~~~~  203 (396)
T TIGR00882       155 ILFS-----------------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSAT-VA---NAL----G------ANASAF  203 (396)
T ss_pred             hhhc-----------------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhh-hh---ccc----c------cccCCC
Confidence            8864                 24555567777666655444433 333322110 00   000    0      000111


Q ss_pred             cccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015396          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  350 (407)
                      +.++.++++|||+++...+..++...........++.|..+...  +.+.+....|...+...+...++.. ..+++.||
T Consensus       204 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~--~~~~~~~~~g~~~~~~~i~~~~~~~-~~g~l~~r  280 (396)
T TIGR00882       204 SLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFA--TPQQGTRVFGYVTTMGELLNALIMF-CAPLIINR  280 (396)
T ss_pred             CHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            22345678889888766655555444444444456666554321  1355666788888888888888874 78899999


Q ss_pred             hchhHHHHHHHHHHHHHHhhhhH
Q 015396          351 LGPIMVARIAGVLTIPLLTSYPY  373 (407)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~  373 (407)
                      +++|+.+.++..+..+....+..
T Consensus       281 ~g~~~~l~~~~~l~~l~~~~~~~  303 (396)
T TIGR00882       281 IGAKNALLIAGTIMSVRIIGSSF  303 (396)
T ss_pred             hccchhHHHHHHHHHHHHHHHHh
Confidence            99999998888877776665443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.90  E-value=7.7e-22  Score=186.12  Aligned_cols=293  Identities=13%  Similarity=0.106  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      ..+.+....++..+..+...|.+|.+. +++|.+..+      .|++.+++.++..+++++.|+++||+|||++++++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~   84 (420)
T PRK09528         11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTD------TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIIS   84 (420)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            445555667777777778889998555 559999999      9999999999999999999999999999999988766


Q ss_pred             HHHHHHHHhh---ccc-----hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhh
Q 015396          121 SVVIFNTLFG---LSV-----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (407)
Q Consensus       121 ~~~~~~~~~~---~~~-----~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (407)
                      +.+++.....   .++     .....++.+++.|.+.....+. ..+. +.. .+++++.++......++|..++|++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~g~~~~~~~~g~~i~~~~~g  162 (420)
T PRK09528         85 GLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERV-SRRSGFEYGRARMWGSLGWALCAFIAG  162 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHH-HhhccccchhhHHhhhHHHHHHHHHHH
Confidence            6554433211   111     1111222333333332222222 2222 222 345677888888999999999999999


Q ss_pred             hhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccc
Q 015396          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGRE  271 (407)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (407)
                      .+.+                 .+|+.++++.++..++..+..++.+++++++...+++++.             ++++..
T Consensus       163 ~l~~-----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  212 (420)
T PRK09528        163 ILFN-----------------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGA-------------NASAVS  212 (420)
T ss_pred             HHHh-----------------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhc-------------cccccc
Confidence            9875                 1344555776666655555544443322211100000000             000011


Q ss_pred             ccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 015396          272 ATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (407)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  351 (407)
                      .+..++.+|+|.++...+...+...........+|.|..+..  .+.+.+..+.+.+.+...++..++.. ..+++.||+
T Consensus       213 ~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~  289 (420)
T PRK09528        213 LKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFF--ATPEQGTRVFGYLNSFQVFLEALIMF-FAPFIINRI  289 (420)
T ss_pred             HHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHH--hccCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            123345677887766555444443333334445565554321  11356677889999988888888874 889999999


Q ss_pred             chhHHHHHHHHHHHHHHhhhhHHH
Q 015396          352 GPIMVARIAGVLTIPLLTSYPYIA  375 (407)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~  375 (407)
                      ++|+.+..+..+..+...++.+.+
T Consensus       290 g~~~~~~~~~~l~~~~~~l~~~~~  313 (420)
T PRK09528        290 GAKNALLLAGTIMAVRIIGSGFAT  313 (420)
T ss_pred             CcchhhHHHHHHHHHHHHHHHhcc
Confidence            999998888887777766665543

>TIGR00889 2A0110 nucleoside transporter

Probab=99.89  E-value=2.7e-21  Score=181.60  Aligned_cols=282  Identities=12%  Similarity=0.049  Sum_probs=191.9

Q ss_pred             HHHHHHHHhhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCC-hHHHHHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASV  122 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Gr-r~~~~~~~~~~  122 (407)
                      .+....++.+....+..|.++ .+.+++|.+.++      .|++.+++.++..++++++|+++||+|| |+++.++.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~------iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~   79 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAE------IGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG   79 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            456667777888888877776 556779999999      9999999999999999999999999965 77888888888


Q ss_pred             HHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHH----h----hhccccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396          123 VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYA----C----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (407)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~----~----~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (407)
                      .++..+..+.++++.+++.|++.|++.+...+. .++.    .    |......|.+..|      .+|.+++|.+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l  153 (418)
T TIGR00889        80 ALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLL  153 (418)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHh
Confidence            888888888899999999999999976665543 3332    2    2233334555544      36888888888877


Q ss_pred             cCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccc
Q 015396          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (407)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (407)
                      ..                ...| .++++.++..++..+..+++||+++..++++.  +.               ++..+.
T Consensus       154 ~~----------------~~~~-~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~---------------~~~~~~  199 (418)
T TIGR00889       154 DI----------------ELSN-IQLYITAGSSALLGVFALTLPDIPVAKSTAKM--SI---------------KVMLGL  199 (418)
T ss_pred             cc----------------cchh-HHHHHHHHHHHHHHHHHhcCCCCCCCcccccc--CH---------------HHHhhh
Confidence            33                1112 23455555555555555677876432211100  00               000111


Q ss_pred             ccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCc--cccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 015396          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG--LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL  351 (407)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  351 (407)
                      ..++++|+|.++...+..++..........+.+.|..+......  .+++....+...+...+..+++.. ..+++.||+
T Consensus       200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~-~~g~l~dr~  278 (418)
T TIGR00889       200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFIL-TIPFFLKRF  278 (418)
T ss_pred             hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            23457788888777666666555444444555656543100000  123456779999999999999985 888999999


Q ss_pred             chhHHHHHHHHHHHHHHhhhhH
Q 015396          352 GPIMVARIAGVLTIPLLTSYPY  373 (407)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~  373 (407)
                      |+|+.+..+.++..+....+..
T Consensus       279 g~r~~l~~~~~~~~v~~~l~~~  300 (418)
T TIGR00889       279 GIKKVMLLSLVAWALRFGFFAY  300 (418)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888777655544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.89  E-value=6e-21  Score=181.73  Aligned_cols=173  Identities=14%  Similarity=0.201  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHH-h--hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-cCChHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-D--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVII  116 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~~~  116 (407)
                      +.++.++...+...+..+...+.+|.+.+ +  +|.+..+      .+++.+.+.++..+++++.|+++|| +|||+++.
T Consensus        10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~   83 (475)
T TIGR00924        10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV   83 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence            44566777888888888888899987754 4  8999998      9999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccc---hhhhhHHHHHHHHHHHHHHHHhhhh
Q 015396          117 MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH---QALGLSTVSTAWGIGLIIGPALGGF  192 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~  192 (407)
                      ++.++.+++.++.+++++++.++++|++.|++.|...+. .++++|++|+++   |++++++.+.+.++|.++||.++++
T Consensus        84 ~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~  163 (475)
T TIGR00924        84 LGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV  163 (475)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999989999999999999999887775 899999998764   8889999999999999999999999


Q ss_pred             hcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhc
Q 015396          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (407)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (407)
                      +.+                ..+|+..+.+.++..++..+..++
T Consensus       164 l~~----------------~~g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       164 IAE----------------NYGYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             HHH----------------hcChHHHHHHHHHHHHHHHHHHHH
Confidence            987                344555556666544444433333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.88  E-value=2.2e-20  Score=176.96  Aligned_cols=294  Identities=14%  Similarity=0.148  Sum_probs=193.7

Q ss_pred             HHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 015396           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (407)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~  128 (407)
                      .....++........++.+..++|-++.       ..|+.+...++..++.++.|+++|.||||..++.+.++..++.++
T Consensus        52 ~~~~~~~~~~~~a~~l~~I~~diG~~~~-------~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv  124 (599)
T PF06609_consen   52 AVIAAYFVLVLPASILPYINADIGGSDN-------WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIV  124 (599)
T ss_pred             HHHHHHHHHhccHHHHHHHHHhcCCCcc-------chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHH
Confidence            3334455666667778899999998754       689999999999999999999999999999999999999999999


Q ss_pred             hhccchHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccc
Q 015396          129 FGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (407)
Q Consensus       129 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~  208 (407)
                      ++.++|...++++..+.|++.|........++|..|.|.|+...++......+....+|.++..+..       .-+|||
T Consensus       125 ~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~-------~~~WRw  197 (599)
T PF06609_consen  125 CATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA-------HSGWRW  197 (599)
T ss_pred             hhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc-------CCCcch
Confidence            9999999999999999999987776667779999999999888777766666666677777777655       334555


Q ss_pred             cccCCCChhHHHHHHHHHHHHHHHH--hccccCCCCCCCCcchhhhhhhhhhh---------------------c-hhhh
Q 015396          209 LFGKFPYFLPCLCISLFAFGVTIAA--FWLPETLHRHNDDDDSCDVSYDALES---------------------A-SAEV  264 (407)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~  264 (407)
                      .|         ++.++...+.++..  +..|++.+..+.++...++...++|-                     . ....
T Consensus       198 ~~---------~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W  268 (599)
T PF06609_consen  198 IF---------YIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPW  268 (599)
T ss_pred             HH---------HHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence            44         55555544433332  22332221111111111111112211                     0 0000


Q ss_pred             ---------------------hhhh--cccccccccccccc-hhHHHHHHHHHHhhccchhhhHHhhhccCCCccCcccc
Q 015396          265 ---------------------KEEE--GREATPKKSLLKNW-PLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY  320 (407)
Q Consensus       265 ---------------------~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  320 (407)
                                           .|..  .+++.-..+++|++ .+...+++.++.....+....++|......     ++-
T Consensus       269 ~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~v-----f~~  343 (599)
T PF06609_consen  269 KSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNV-----FGS  343 (599)
T ss_pred             CCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----ccC
Confidence                                 1221  23455667888874 455555666666555566666777665544     222


Q ss_pred             ch---hhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHH-HHHHHHHHHHHHhhh
Q 015396          321 ST---QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMV-ARIAGVLTIPLLTSY  371 (407)
Q Consensus       321 s~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~  371 (407)
                      +.   ...++.....+++...+.. +.+.+.++.++.|. ++++..++.+++.++
T Consensus       344 d~~~~~~~~~~s~~~~fg~~~g~~-i~g~l~~~ir~~Kw~li~~~~~~ta~~Gam  397 (599)
T PF06609_consen  344 DPISITEIGWISSPVGFGSCAGAV-ILGLLFSKIRHIKWQLIFGSVLMTAFCGAM  397 (599)
T ss_pred             CCcccceeehhhhhHHHHHHHHHH-HHHHHHHHccchhHHHHHHHHHHHHHHHHH
Confidence            22   3467777777888777775 56667776665444 456655555444444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.88  E-value=8.7e-21  Score=179.42  Aligned_cols=314  Identities=17%  Similarity=0.173  Sum_probs=229.2

Q ss_pred             CCCCchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHH
Q 015396           35 KSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV  114 (407)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~  114 (407)
                      +..+.|-..+..++..+...-....+..+.+.++++++.+.++      ++|+.++......+..|+.+.+.||+|.|.+
T Consensus        40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~------~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v  113 (509)
T KOG2504|consen   40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQ------IAWIGSLLLGVYLLAGPLVSALCNRFGCRTV  113 (509)
T ss_pred             CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccH------HHHHHHHHHHHHHHhccHHHHHHhhcCchHH
Confidence            3445555555555666666666666778889999999999999      9999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHH-HHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 015396          115 IIMGTASVVIFNTLFGLSVNFWMAVLTR-FLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (407)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r-~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (407)
                      .+.+.++..++.++.++++++|++++.. ++.|+|.|+... ...++..+|+ ++|+.+.|+...+.++|.++-|.+..+
T Consensus       114 ~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~  192 (509)
T KOG2504|consen  114 MIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKY  192 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHH
Confidence            9999999999999999999999999887 888999888544 5777776665 789999999999999999999999999


Q ss_pred             hcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhcccc-CCCCCCC--------------Cc--------ch
Q 015396          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE-TLHRHND--------------DD--------DS  249 (407)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~~~~--------------~~--------~~  249 (407)
                      +.+                +++||...++.+.+.+-..+....+++ +++..+.              .+        .+
T Consensus       193 l~~----------------~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (509)
T KOG2504|consen  193 LLS----------------KYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISER  256 (509)
T ss_pred             HHH----------------HhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccC
Confidence            998                556666667777666555444333332 2221111              00        00


Q ss_pred             hhhhhh----hhhhchhhhhhhh--ccccc---ccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCcccc
Q 015396          250 CDVSYD----ALESASAEVKEEE--GREAT---PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNY  320 (407)
Q Consensus       250 ~~~~~~----~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  320 (407)
                      .+....    ..+..++..++.+  ..+..   ...++++++.++...+...+..........+++.|..+      .|+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~------~g~  330 (509)
T KOG2504|consen  257 DSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKS------LGL  330 (509)
T ss_pred             CCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh------cCC
Confidence            000000    0000000000000  11111   13688999999999888888888888888888888775      899


Q ss_pred             chhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc--hhHHHHHHHHHHHHHHhhhhHHHhhh
Q 015396          321 STQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLTSYPYIAMLS  378 (407)
Q Consensus       321 s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (407)
                      +..+++++.++.++...++++ +.+++.|+..  ++.+..++.+..+++.+..++.....
T Consensus       331 ~~~~aa~l~Siigi~~i~gRi-~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~  389 (509)
T KOG2504|consen  331 SSNDAAFLLSIIGVSDIIGRI-ILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYV  389 (509)
T ss_pred             ChhhhHHHHHHHHHhhhhhhh-hhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            999999999999999999995 8899999877  44455566666666665555555443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.88  E-value=4.1e-20  Score=176.11  Aligned_cols=150  Identities=17%  Similarity=0.175  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-cCChHHHHH
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIM  117 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~~~~  117 (407)
                      ++.++.++...+...+..+...+.++ ++.+++|.+.++      .+++.+.+.....+..++.|+++|| +||||+++.
T Consensus        13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~------a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~   86 (489)
T PRK10207         13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQ------AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVL   86 (489)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHH
Confidence            36677777777888888887777776 556789999988      8999999998888889999999999 999999999


Q ss_pred             HHHHHHHHHHHhhccchHHH-HHHHHHHHhhhccchhHH-HHHHhhhcccc--chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396          118 GTASVVIFNTLFGLSVNFWM-AVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFL  193 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (407)
                      +.+++.++.++++++.+... ++++|+++|++.|...+. .+++.|.+|++  +|++++++++.+.++|..+||.+++++
T Consensus        87 g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l  166 (489)
T PRK10207         87 GAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVI  166 (489)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998876444 558899999999988775 99999999877  457789999999999999999999999


Q ss_pred             cC
Q 015396          194 AQ  195 (407)
Q Consensus       194 ~~  195 (407)
                      .+
T Consensus       167 ~~  168 (489)
T PRK10207        167 AD  168 (489)
T ss_pred             HH
Confidence            98

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.88  E-value=9.4e-26  Score=214.92  Aligned_cols=342  Identities=18%  Similarity=0.236  Sum_probs=214.3

Q ss_pred             HHHHHhhhhhhchhhhHHHHH--Hhhcccccccc---hhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHH
Q 015396           48 IIVLCTALPISSLFPFLYFMI--KDFQIAKREED---IGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~---~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (407)
                      ++.+..+++........+...  ..++.+..+.+   .....++..+...+|..+|++++|+++||+|||+.++++.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            344666666666655555443  33333332211   2344789999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccc---hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 015396          123 VIFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (407)
Q Consensus       123 ~~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (407)
                      .++.++.++++   +++.+.++|++.|++.|...+. ..++.|..|+++|++..++.+....+|..++..++..+...  
T Consensus        87 ~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~--  164 (451)
T PF00083_consen   87 IIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYY--  164 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            99999999999   9999999999999998887775 99999999999999999999999999999888877655331  


Q ss_pred             CCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhh--hhhhhc---hhhhhhhhc----
Q 015396          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESA---SAEVKEEEG----  269 (407)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~----  269 (407)
                           .+      .+.||..+.+.+++.++.++...++||+|++...+++.+++.+  ++....   +++.++..+    
T Consensus       165 -----~~------~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~  233 (451)
T PF00083_consen  165 -----SD------NWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKE  233 (451)
T ss_pred             -----cc------cccccccccccccccccccccccccccccceeccccccccccccccccccccccccccccccccccc
Confidence                 11      2345655577777777777777889999998755544333321  111101   011111110    


Q ss_pred             --ccccccccccccchhH-HHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 015396          270 --REATPKKSLLKNWPLM-SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF  346 (407)
Q Consensus       270 --~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~  346 (407)
                        +.+..++++++++..+ .......+..............|.  +...+..+.+..  -......++...++. +.+.+
T Consensus       234 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~--~~i~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~  308 (451)
T PF00083_consen  234 SQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYS--PSIFENAGISNS--FLATLILGLVNFLGT-LLAIF  308 (451)
T ss_pred             ccccceeeeeccccccccccccccccccccccccccccccccc--cccccccccccc--ccccccccccccccc-ccccc
Confidence              1113467777775522 222222222222122211111221  222222555555  112223334444444 35568


Q ss_pred             HHHHhchhHHHHHHHHHHHHHHhhhh--H--HHhhh---hhhh--H-------hhhhhhHHHHHHHhhcCCCCCCCC
Q 015396          347 LERILGPIMVARIAGVLTIPLLTSYP--Y--IAMLS---GFGL--A-------FLLNCASVVKNLLSSSGPGSKRSC  407 (407)
Q Consensus       347 l~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~---~~~~--~-------~~~~~~~~~~~~~~~~~p~~~rs~  407 (407)
                      +.||+|||+.+..+.....++...+.  .  .....   ....  .       ...+.........+|++|++.|+.
T Consensus       309 ~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~  385 (451)
T PF00083_consen  309 LIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRST  385 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccccccccccc
Confidence            89999999999988888777666553  1  11110   1111  0       111122334456799999999973

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.88  E-value=6e-21  Score=184.92  Aligned_cols=303  Identities=17%  Similarity=0.131  Sum_probs=202.7

Q ss_pred             HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhh
Q 015396           68 IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGS  147 (407)
Q Consensus        68 ~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  147 (407)
                      .+.++.+...      ..+..+++++|..+|++++|+++||+|||++++.+.++..++.++.++++|++.+++.|++.|+
T Consensus       110 ~~~~c~~~~~------~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~  183 (521)
T KOG0255|consen  110 WNLVCDSSTL------VALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGF  183 (521)
T ss_pred             hceeeCcHhH------HHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            3455666666      8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHH
Q 015396          148 LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFA  226 (407)
Q Consensus       148 ~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  226 (407)
                      +.+.... ...+++|++++++|+.+..+ ......++.++|..++++..                  +||+.+++..+..
T Consensus       184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~------------------~Wr~~~~~~~~~~  244 (521)
T KOG0255|consen  184 FGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR------------------DWRWLFWIISIPS  244 (521)
T ss_pred             hccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh------------------hHHHHHHHHHHHH
Confidence            8777555 59999999999999999999 77777778888888888764                  3555558888877


Q ss_pred             HHHHHHHhccccCCCCCCCCcchhhhhh--hhhhh------ch-h----h-h-hhh---hcccccccccccccchhHHHH
Q 015396          227 FGVTIAAFWLPETLHRHNDDDDSCDVSY--DALES------AS-A----E-V-KEE---EGREATPKKSLLKNWPLMSSI  288 (407)
Q Consensus       227 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~------~~-~----~-~-~~~---~~~~~~~~~~~~~~~~~~~~~  288 (407)
                      ++.++..+..||++++...+.+.++..+  ++..+      .. +    . . ++.   ..+.+....++++.|+++...
T Consensus       245 ~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~  324 (521)
T KOG0255|consen  245 GLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRT  324 (521)
T ss_pred             HHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHH
Confidence            7776666667799998755444332221  11100      00 0    0 0 000   011224467788887665554


Q ss_pred             HHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHH
Q 015396          289 IVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  368 (407)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  368 (407)
                      +...+..+.......-+      .....++|.+.   .......+....... ...+...++.|||.....+..+..+++
T Consensus       325 ~~~~~~~~~~~~~y~gl------~~~~~~lg~~~---~~~~~~~~~~~~p~~-~~~~~~~~~~gR~~~~~~~~~~~~~~~  394 (521)
T KOG0255|consen  325 LYLLFIWFVFSLVYYGL------SLNVSGLGGNI---YLNFTLSGLVELPAY-FRNGLLLPEFGRRPPLFLSLFLAGIGL  394 (521)
T ss_pred             HHHHHHHHHHhHHHHhh------hhhhhhcCchH---HHHHHHHHHHHhhHH-HHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence            44444332211111111      11111133333   333333444555554 466788899999999999999999999


Q ss_pred             hhhhHHHhhhh---hhhHhhhh------hhHHHHHHHhhcCCCCCC
Q 015396          369 TSYPYIAMLSG---FGLAFLLN------CASVVKNLLSSSGPGSKR  405 (407)
Q Consensus       369 ~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~p~~~r  405 (407)
                      +...+......   .+....++      .........+|.+|+..|
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r  440 (521)
T KOG0255|consen  395 LLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVR  440 (521)
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            88877664333   11111111      111234556778887655

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.87  E-value=2e-20  Score=161.84  Aligned_cols=191  Identities=20%  Similarity=0.167  Sum_probs=158.3

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (407)
                      .++..........+.+.+......-+.|...+..|.+..+      ..++....+.+..+++..+|..+|++|||+.+.+
T Consensus        75 fq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q------~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~  148 (528)
T KOG0253|consen   75 FQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQ------APLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNL  148 (528)
T ss_pred             chhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhh------hhHHHHHHHhhhhhhhhhhheehhhhhcchhhhh
Confidence            3444455555566666666666666777888889988888      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      .....++..++.+.++|+..+.+.|.+.|+|.|......++-.|..|..+|...+-.. ..+.+|.++...++-.+..  
T Consensus       149 T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~--  225 (528)
T KOG0253|consen  149 TFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMS--  225 (528)
T ss_pred             hHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHH--
Confidence            9999999999999999999999999999999888444588889999999999877666 8999999999999988887  


Q ss_pred             CCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhh
Q 015396          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCD  251 (407)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  251 (407)
                           .+|||+.+         ....++..+.....+++||+|+....+.++.+
T Consensus       226 -----~~gwr~~l---------~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~k  265 (528)
T KOG0253|consen  226 -----NFGWRYLL---------FTSSTPLMFAARFLVWVYESPRFYLAKGDDYK  265 (528)
T ss_pred             -----hhhHHHHH---------HHHHhHHHHHHHHHhhcccCcchhhhcCChHH
Confidence                 56666655         66677777777788899999998655544433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.87  E-value=3.8e-20  Score=168.69  Aligned_cols=175  Identities=13%  Similarity=0.104  Sum_probs=144.7

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~  125 (407)
                      +|+..|+..+ +.......|++.+++|+++++.     .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++.
T Consensus        32 lC~fGF~~e~-R~n~s~a~p~L~~elglT~~qv-----~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~  105 (511)
T TIGR00806        32 LCFYGFMAQF-RPGESFITPYLLTVLNFTEETV-----TNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCV  105 (511)
T ss_pred             HHHHHHHHHh-hchHHHHHHHHHHHcCCCHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            4444444333 4555667789999999998762     689999999999999999999999999999999999999999


Q ss_pred             HHHhhccchHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccc
Q 015396          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (407)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g  205 (407)
                      .++.+++++++.+.+.|++.|++.|...+...++..|+|+++|+++.++...+..+|.++++++++++ .       .+|
T Consensus       106 t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll-~-------s~g  177 (511)
T TIGR00806       106 WLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL-V-------TLG  177 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------hcC
Confidence            99999999999999999999999998775599999999999999999999999999999999999994 3       467


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHHHHhccccCC
Q 015396          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETL  240 (407)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  240 (407)
                      ||+..      ...++....-.+.++..+++|..+
T Consensus       178 Wr~y~------~Ln~Isl~s~~~a~~~a~~LP~~~  206 (511)
T TIGR00806       178 WISYS------TLNIISLVFMTFSVFLALFLKRPK  206 (511)
T ss_pred             chhHH------HHHHHHHHHHHHHHHHHHhCCCCc
Confidence            77643      222333344444556667778443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.87  E-value=2.2e-19  Score=155.94  Aligned_cols=268  Identities=17%  Similarity=0.119  Sum_probs=219.3

Q ss_pred             hhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccch
Q 015396           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (407)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~  134 (407)
                      -....+.|.++.+.+++|+|.+.      .|+++++..+...+.+++..+++.|+|.+|.+.+++++..++.++-... +
T Consensus        26 ~~itsvgPLL~~Ir~~~gls~s~------aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~   98 (395)
T COG2807          26 PAITSVGPLLDEIRQDLGLSFSV------AGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-G   98 (395)
T ss_pred             hhhhhhhhhHHHHHHHhcccHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-c
Confidence            36678899999999999999999      9999999999999999999999999999999999999999999998887 7


Q ss_pred             HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCC
Q 015396          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (407)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (407)
                      .+.++.+-.+.|.+.+...+. +.++.+.|| |+-+..++++.+..++|.++++.+.-.+.++       .        .
T Consensus        99 ~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~-------~--------~  162 (395)
T COG2807          99 LPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQH-------S--------G  162 (395)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHh-------h--------c
Confidence            888899999999999998886 999999998 5678899999999999999999999998872       2        1


Q ss_pred             CChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHH
Q 015396          214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCV  293 (407)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (407)
                      +|+....+-+.++++.++.+  +|...+....+.                     +....+...++|+|.-|...+.+.+
T Consensus       163 gW~~aL~~WAl~allAl~~W--lPq~~r~~~~~~---------------------~~~~~~~~~vw~~~~aW~vtLfmGl  219 (395)
T COG2807         163 GWRGALGFWALLALLALLIW--LPQALREQAASI---------------------ATKLVSVRKVWRSPLAWQVTLFMGL  219 (395)
T ss_pred             cHHHHHHHHHHHHHHHHHHH--hhhccccccccc---------------------ccccccccccccCchhHHHHHHHHh
Confidence            35555466666666666554  454322211110                     0112244678999999999999999


Q ss_pred             HhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHh-chhHHHHHHHHHHHHHHhhhh
Q 015396          294 FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-GPIMVARIAGVLTIPLLTSYP  372 (407)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~  372 (407)
                      .++..+....++|.++.+      .|+|+++.|.+.+...+..+..++ ..+.+.+|. ++|+.......++.++...+.
T Consensus       220 qS~~~Y~~~~WLP~ili~------~G~sa~~aG~llsl~~l~~~~~~l-l~P~la~R~~n~r~~~~~~~~~~l~G~~G~~  292 (395)
T COG2807         220 QSLLYYIVIGWLPAILID------RGLSAAEAGSLLSLMQLAQLPTAL-LIPLLARRSKNQRPLVVLALLLMLVGLVGLL  292 (395)
T ss_pred             hHHHHHHHHHHHHHHHHH------cCCCHHHhhhHHHHHHHHHHHHHH-HHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999988      799999999999999999999995 888888864 456666666666666666554


Q ss_pred             HHH
Q 015396          373 YIA  375 (407)
Q Consensus       373 ~~~  375 (407)
                      +.+
T Consensus       293 ~~P  295 (395)
T COG2807         293 LAP  295 (395)
T ss_pred             Hhh
Confidence            443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.86  E-value=3.1e-19  Score=166.74  Aligned_cols=274  Identities=13%  Similarity=0.055  Sum_probs=192.8

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHH--HHHHHHHHHHhhhhhhh-cccccCChHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYV--GSSFMFGRALTSVFWGL-VADRYGRKPVIIMGT  119 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~--~~~~~~~~~~~~~~~G~-l~dr~Grr~~~~~~~  119 (407)
                      +..+...++.+++..+...|.+|.+.++.|.+.++      +|++  .+...+...+.+|+.+. ..||+||||..++..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~------iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~   76 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTA------LAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPM   76 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHH
Confidence            44567778889999999999999999999999999      9997  46678888888888844 799999999875554


Q ss_pred             HH-HHHHHHHhh---ccch-HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396          120 AS-VVIFNTLFG---LSVN-FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (407)
Q Consensus       120 ~~-~~~~~~~~~---~~~~-~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (407)
                      .+ ..+.....+   ...+ ..+++...++.++..+...+. .++..|..++++++...+....+..+|..+|+...+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l  156 (390)
T TIGR02718        77 QCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVL  156 (390)
T ss_pred             HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 222222222   2222 333444445555555566664 77888888888888888888888899999999999899


Q ss_pred             cCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccc
Q 015396          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREAT  273 (407)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (407)
                      .+                +.+|+.++++.++..++..+..++++|++++++++++  +                   ...
T Consensus       157 ~~----------------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~  199 (390)
T TIGR02718       157 FG----------------KFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPL--A-------------------RRA  199 (390)
T ss_pred             HH----------------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccch--h-------------------hHH
Confidence            88                4455666688777766655554455443221111000  0                   011


Q ss_pred             ccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhch
Q 015396          274 PKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (407)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (407)
                      +.++.+|+|.++......++..........+.+.|+.+      .|++++++|.+....++...+.+.++.+++.||+++
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~  273 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGL  273 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34577888888877777777777666777777777665      699999999998888765544433589999999999


Q ss_pred             hHHHHHHHHHHH
Q 015396          354 IMVARIAGVLTI  365 (407)
Q Consensus       354 ~~~~~~~~~~~~  365 (407)
                      ++.+..+..+.+
T Consensus       274 ~~~l~~~~~~~~  285 (390)
T TIGR02718       274 WRTFILGVGLAG  285 (390)
T ss_pred             HHHHHHHHHHHH
Confidence            999887766553

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.86  E-value=4.3e-20  Score=175.30  Aligned_cols=281  Identities=15%  Similarity=0.121  Sum_probs=192.2

Q ss_pred             hhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc----cCChH-HHHHHHHHHHHHH
Q 015396           53 TALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKP-VIIMGTASVVIFN  126 (407)
Q Consensus        53 ~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr----~Grr~-~~~~~~~~~~~~~  126 (407)
                      .......+.+.++ .+.+++|+++.+      +|++.++..+..++..|+.|+++||    +|||| .++.+.+..+++.
T Consensus        11 ~~~~~~~~~~~l~~~~~~~~g~s~~~------~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~   84 (437)
T TIGR00792        11 NNFIFAIVSTYLLFFYTDVLGLSAAF------VGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVL   84 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHH
Confidence            3344455555554 667789999999      9999999999999999999999997    67744 5677878888777


Q ss_pred             HHhhccch------HHHHHHHHHHHhhhccchhH-HHHHHhhhc-cccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 015396          127 TLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (407)
Q Consensus       127 ~~~~~~~~------~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (407)
                      +++...++      .+.+++.+++.+++.+...+ ..++..|.. ++++|++..++.+.+..+|..+++.+.+.+....+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~  164 (437)
T TIGR00792        85 VLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFG  164 (437)
T ss_pred             HHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            77665543      45677778888887776555 488888887 57899999999999999998888777666654111


Q ss_pred             CCCCcccccccccCCCChhHHHHHHHHHHHHHH-HHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccc
Q 015396          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKS  277 (407)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (407)
                      +..         ...+|+..+.+.+++.++..+ ..+..||+++..+.++++                  +.+.....+.
T Consensus       165 ~~~---------~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~------------------~~~~~~~~~~  217 (437)
T TIGR00792       165 GGD---------DKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEK------------------KLSLKQIFKA  217 (437)
T ss_pred             CCc---------ccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccccc------------------CCCHHHHHHH
Confidence            000         034566666777776665443 345667654221110000                  0001123466


Q ss_pred             ccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHH
Q 015396          278 LLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVA  357 (407)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  357 (407)
                      ++++|.++...+..++..........+.+.|....     ++ +....+.+.....++.+++. ++.+++.||+|+|+.+
T Consensus       218 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g~~~~~  290 (437)
T TIGR00792       218 LFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYV-----LG-DPELFSYMGSIAIVAGLIGV-LLFPRLVKKFGRKILF  290 (437)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeee-----cC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHH
Confidence            78899988877777776665555544445444332     34 45566777777778888887 4889999999999999


Q ss_pred             HHHHHHHHHHHhhhhH
Q 015396          358 RIAGVLTIPLLTSYPY  373 (407)
Q Consensus       358 ~~~~~~~~~~~~~~~~  373 (407)
                      ..+..+..++.+.+.+
T Consensus       291 ~~~~~~~~~~~~~~~~  306 (437)
T TIGR00792       291 AGGILLMVLGYLIFFF  306 (437)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888777776665544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.84  E-value=1.3e-21  Score=174.00  Aligned_cols=361  Identities=14%  Similarity=0.098  Sum_probs=216.5

Q ss_pred             CCchHHHH---HHHHHHHHhhhhhhchhhhHHHHHHhh-cccccccc-hhhHHHHHHHHHHHHHHHhhhhhhhcccccCC
Q 015396           37 GLPITELF---SIWIIVLCTALPISSLFPFLYFMIKDF-QIAKREED-IGSYAGYVGSSFMFGRALTSVFWGLVADRYGR  111 (407)
Q Consensus        37 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~-~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Gr  111 (407)
                      ...|+++.   ...++.+.+.++...++...|.+...+ |.+....+ -+-..+.+..+..+|.++|++++|++.||+||
T Consensus        34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR  113 (538)
T KOG0252|consen   34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR  113 (538)
T ss_pred             chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            34555554   445577788888888888888776544 32211100 11127889999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhccc-------hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHH
Q 015396          112 KPVIIMGTASVVIFNTLFGLSV-------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL  183 (407)
Q Consensus       112 r~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~  183 (407)
                      |+++...+++..++++++++..       -.+++...|++.|+|.|.-.|. .++.+|..-++.||...+......+.|.
T Consensus       114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi  193 (538)
T KOG0252|consen  114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI  193 (538)
T ss_pred             hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence            9999999999999998777642       2578999999999999998886 8889999999999998888777677666


Q ss_pred             HHHHHhhhhhcCCCCCCCCccccccccc--CCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcch-hhhhhhhhhh-
Q 015396          184 IIGPALGGFLAQPAEKYPNLFSSESLFG--KFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDS-CDVSYDALES-  259 (407)
Q Consensus       184 ~~~~~~~~~l~~~~~~~~~~~gw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~-  259 (407)
                      ..|.+++-.+....+.   .++-+....  ..-||+.+.+.+++++..+...+.+||+++......++ +++. ++.+. 
T Consensus       194 laG~ivt~Iv~~~fe~---~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~-~d~~k~  269 (538)
T KOG0252|consen  194 LAGGIVALIVSAIFEK---IFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA-GDMKKV  269 (538)
T ss_pred             hhccHHHHHHHHHHhc---cCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh-hccccc
Confidence            6666655554421110   111111110  23478888888888888888888899998765211111 1100 00000 


Q ss_pred             -----chhhhhhhhccccccc----cccccc---chhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHH
Q 015396          260 -----ASAEVKEEEGREATPK----KSLLKN---WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGE  327 (407)
Q Consensus       260 -----~~~~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~  327 (407)
                           ..++..+...+.+...    ...+..   +.+...+...+++-...+..+.+....+..      .|+.+.+..+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~------ig~~~~~~~~  343 (538)
T KOG0252|consen  270 LSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSA------IGVIPSANTY  343 (538)
T ss_pred             cccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHh------hccCCCcchH
Confidence                 0001111111111111    112222   333445555555555544444433333332      4444443333


Q ss_pred             --------HHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHHh-hhhhhhHhhhhhhH--------
Q 015396          328 --------VLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM-LSGFGLAFLLNCAS--------  390 (407)
Q Consensus       328 --------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------  390 (407)
                              ...+......+-+..+...+.|++||++..+.++.++.+..+.+...-+ ......+++++...        
T Consensus       344 ~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGP  423 (538)
T KOG0252|consen  344 HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGP  423 (538)
T ss_pred             HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCC
Confidence                    1222222222212235566789999999999999999888877654332 22222222222222        


Q ss_pred             --HHHHHHhhcCCCCCCCC
Q 015396          391 --VVKNLLSSSGPGSKRSC  407 (407)
Q Consensus       391 --~~~~~~~~~~p~~~rs~  407 (407)
                        ......+|.+|.+.|++
T Consensus       424 n~ttfivpaE~FParvR~t  442 (538)
T KOG0252|consen  424 NATTFIVPAEIFPARVRST  442 (538)
T ss_pred             CceeEEeehhhchHHHhhh
Confidence              22334688888888873

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.82  E-value=4.3e-18  Score=163.13  Aligned_cols=149  Identities=17%  Similarity=0.171  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-cCChHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMG  118 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~  118 (407)
                      +.++.++...+...+..+...+.++.+ .+++|.+.++      .+++.+.+........++.|+++|| +|||+.+..+
T Consensus        21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~------a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g   94 (500)
T PRK09584         21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEAD------SITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLG   94 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            345666777777778777777777744 5889999988      7888877776666667799999999 5999999999


Q ss_pred             HHHHHHHHHHhhccc-hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccc--hhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      .++..++.+++++++ +.+.+++.|++.|++.|...+. .+++.|++|+++  |..++++++.+.++|..+||.+++++.
T Consensus        95 ~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~  174 (500)
T PRK09584         95 AIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA  174 (500)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998888864 5667778899999998887775 889999998653  456788889999999999999999999


Q ss_pred             C
Q 015396          195 Q  195 (407)
Q Consensus       195 ~  195 (407)
                      +
T Consensus       175 ~  175 (500)
T PRK09584        175 A  175 (500)
T ss_pred             H
Confidence            8

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.82  E-value=1.4e-17  Score=153.95  Aligned_cols=284  Identities=17%  Similarity=0.256  Sum_probs=210.0

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccC-ChHHHHHHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVIIMGTASVV  123 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G-rr~~~~~~~~~~~  123 (407)
                      .+....++.++..+.+.|.++.+.++.|.|.+|      +|.+.++..+...++++++|.++||.+ +||.+.++.++.+
T Consensus         6 rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~q------IG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~   79 (400)
T PF03825_consen    6 RLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQ------IGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSA   79 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence            456677788888889999999999999999999      999999999999999999999999986 5778878778777


Q ss_pred             HHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhh-hhhcCCCCCCC
Q 015396          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG-GFLAQPAEKYP  201 (407)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~~~~  201 (407)
                      +........++++.+++..++..+......|. .++..+...  ++++-.|-.....++|.+++.... +.+...     
T Consensus        80 ~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~-----  152 (400)
T PF03825_consen   80 LALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGY-----  152 (400)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhh-----
Confidence            77777777888998888888877776666664 777766665  445567777777888887775542 233221     


Q ss_pred             CcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccccccc
Q 015396          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (407)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (407)
                        .++.      .....+++.+...++.....+.+|+.|++++.+++.++                  +...+..+++|+
T Consensus       153 --~~~~------~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~~~~------------------~~~~~~~~llk~  206 (400)
T PF03825_consen  153 --LGIS------GTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKESVKK------------------LLGLDALKLLKN  206 (400)
T ss_pred             --hccc------cccHHHHHHHHHHHHHHHHHHhCCCCccccccCCCccc------------------ccchHHHHHhcC
Confidence              1111      11122344444444444445667877633322211111                  112234578999


Q ss_pred             chhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccc-cchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHH
Q 015396          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLN-YSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (407)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (407)
                      |++....+..++.......+..+.+.|+++      .| .+....+.++++..++.++.. +..+++.+|+|.++++.++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~------~gg~~~~~~g~~~~l~~~aEi~~f-~~~~~~~~r~g~~~ll~~a  279 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQE------LGGYSGSTIGILWALGVVAEIPFF-FFSGRFLKRFGIKWLLLLA  279 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHH
Confidence            999998888888888888888999989887      45 777888888888888888886 4889999999999999999


Q ss_pred             HHHHHHHHhhhhHH
Q 015396          361 GVLTIPLLTSYPYI  374 (407)
Q Consensus       361 ~~~~~~~~~~~~~~  374 (407)
                      .+..++=..++.+.
T Consensus       280 ~~~~~vR~~l~a~~  293 (400)
T PF03825_consen  280 LVAYAVRWLLYAYF  293 (400)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99988888777666

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.81  E-value=1.7e-17  Score=155.33  Aligned_cols=314  Identities=17%  Similarity=0.155  Sum_probs=198.9

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccc----ccCChHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV  114 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~Grr~~  114 (407)
                      |.++++.++...+...+......+.++.+.+++|.+...      .+++..+..+...+.+|+.|+++|    |+||||.
T Consensus         2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp   75 (477)
T TIGR01301         2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP   75 (477)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH
Confidence            456777777777777888899999999999999999988      999999999999999999999999    5999999


Q ss_pred             HHHH-HHHHHHHHHHhhccchHH-----------------HHHHHHHHHhhhccchhH-HHHHHhhhccccch--hhhhH
Q 015396          115 IIMG-TASVVIFNTLFGLSVNFW-----------------MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQ--ALGLS  173 (407)
Q Consensus       115 ~~~~-~~~~~~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r--~~~~~  173 (407)
                      ++.. .+...++.++.+++++.+                 .++++-.+..++.....+ ..++++|.+|+++|  +.+.+
T Consensus        76 ~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~  155 (477)
T TIGR01301        76 FIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANA  155 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHH
Confidence            8875 666666667776765543                 223333344445555444 59999999998865  57899


Q ss_pred             HHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccc-----ccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCCCCCCc
Q 015396          174 TVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE-----SLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDD  247 (407)
Q Consensus       174 ~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~  247 (407)
                      +.+...++|.++|+.++++.-...     .+++.     ... ..+.+..|++.++..++.. +..+..+|.+...+++.
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~  229 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYK-----IFPFTKTEACGVS-CANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDF  229 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHH-----hcccccccccccc-cchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccc
Confidence            999999999999999998752100     11110     000 1246677777777666544 44667788764322111


Q ss_pred             chhhhhhhhhhhchhhhhhhhcccccccccccc-----cchhHHHHHHHHHHhhccchhhhHHhhhccCCCccC----cc
Q 015396          248 DSCDVSYDALESASAEVKEEEGREATPKKSLLK-----NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLG----GL  318 (407)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  318 (407)
                      +++     +.++.++      .......+++++     .+.++..+++.++..+..+.+..+...|..+.....    ..
T Consensus       230 ~~~-----~~~~~~~------~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~  298 (477)
T TIGR01301       230 INS-----EAAPPSK------HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA  298 (477)
T ss_pred             hhh-----hcccccc------cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh
Confidence            000     0000000      000111222222     356777888888877766666555555543221110    00


Q ss_pred             ccchh--hHHHHHHHHHHHHHHHHHhHHHHHHHHhch-hHHHHHHHHHHHHHHhhhhHHHh
Q 015396          319 NYSTQ--MVGEVLAITGFSLLVFQLSLYPFLERILGP-IMVARIAGVLTIPLLTSYPYIAM  376 (407)
Q Consensus       319 g~s~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  376 (407)
                      .++..  .-.+......+...+.++ +..++.+++|+ |+...++.++.++++....+...
T Consensus       299 ~y~~gvr~G~~~l~~~s~~~~i~s~-~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~  358 (477)
T TIGR01301       299 KYDDGVRAGAFGLMLNSVVLGITSI-GMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTY  358 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            11100  122334445555556664 77889999985 66668888888888777765553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09669 putative symporter YagG; Provisional

Probab=99.79  E-value=4e-17  Score=155.09  Aligned_cols=286  Identities=16%  Similarity=0.073  Sum_probs=177.1

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhH-HHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc----cCCh
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRK  112 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr----~Grr  112 (407)
                      .++++.+.-.+..+...+....+..++ +++.+++|++..+      +|.+.++..+..++..|+.|+++||    +|||
T Consensus         6 l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~------~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grr   79 (444)
T PRK09669          6 LTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAI------MGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQF   79 (444)
T ss_pred             ccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHcccceeeEeeecCCCCCCCc
Confidence            444544433334344444344444444 4777889999999      9999999999999999999999998    7875


Q ss_pred             -HHHHHHHHHHHHHHHHhhccc------hHHHHHHHHHHHhhhccchh-HHHHHHhhhc-cccchhhhhHHHHHHHHHHH
Q 015396          113 -PVIIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLG-PIKAYACEIF-REEHQALGLSTVSTAWGIGL  183 (407)
Q Consensus       113 -~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~g~~~-~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~  183 (407)
                       +.++.+.+..+++.++....+      ..+++++..++.+.+..... |..++.+|+. ++++|.+..++......+|.
T Consensus        80 rp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~  159 (444)
T PRK09669         80 RPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGG  159 (444)
T ss_pred             chhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence             555567677766665544433      24566666666666544444 4488999988 56889998888888888888


Q ss_pred             HHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHH-HHhccccCCCCCCCCcchhhhhhhhhhhchh
Q 015396          184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASA  262 (407)
Q Consensus       184 ~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  262 (407)
                      .+++.+...+...       ++... . +.+|+..+.+.+++.++..+ ..+..+|..++.++++               
T Consensus       160 ~i~~~~~~pl~~~-------~~~~~-~-~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~~---------------  215 (444)
T PRK09669        160 LIVSVIALPLVDI-------LGKGD-E-QKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDNS---------------  215 (444)
T ss_pred             HHHHHHHHHHHHH-------hCCCc-h-hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcCC---------------
Confidence            8887766555441       11100 0 34566555666665554433 3344455422211000               


Q ss_pred             hhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHh
Q 015396          263 EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLS  342 (407)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~  342 (407)
                            .+..+..+.+++|++++......++.............+|....     .+ +....+.+.....+..+++. +
T Consensus       216 ------~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~-----~~-~~~~~~~~~~~~~i~~ii~~-~  282 (444)
T PRK09669        216 ------SSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYV-----LL-RPDLATLFLVTGMIAGLFGA-L  282 (444)
T ss_pred             ------CCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeee-----cC-CHHHHHHHHHHHHHHHHHHH-H
Confidence                  00122456778999988887776665555444444333333322     22 23333444444455556655 5


Q ss_pred             HHHHHHHHhchhHHHHHHHHHHHH
Q 015396          343 LYPFLERILGPIMVARIAGVLTIP  366 (407)
Q Consensus       343 ~~~~l~~~~~~~~~~~~~~~~~~~  366 (407)
                      +.+++.||+|+|+....+.....+
T Consensus       283 ~~~~l~~r~gk~~~~~~~~~~~~~  306 (444)
T PRK09669        283 LSERLLGKFDRVRAFKWTIVAFVI  306 (444)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHH
Confidence            788999999999998877765554

>PTZ00207 hypothetical protein; Provisional

Probab=99.78  E-value=7.7e-17  Score=153.99  Aligned_cols=130  Identities=13%  Similarity=0.156  Sum_probs=109.7

Q ss_pred             hhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc----
Q 015396           57 ISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----  132 (407)
Q Consensus        57 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----  132 (407)
                      .+.+..+.+.+.+++|++..+      .+++.++. .....++++.|+++||+|||+++.++.+++.++.++++++    
T Consensus        43 ~y~fsv~s~~L~~~lgls~~~------l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~  115 (591)
T PTZ00207         43 MYAFNLISGAMQARYNLTQRD------LSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEV  115 (591)
T ss_pred             HHHHHHHHHHHHHHhCcCHHH------HHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            345567778999999999998      88887764 3445678889999999999999999999999999999887    


Q ss_pred             --chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHH-HHHhhhhhc
Q 015396          133 --VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII-GPALGGFLA  194 (407)
Q Consensus       133 --~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~  194 (407)
                        ++++.+++.|++.|++.+...+. ...+.+++| ++||++.|+...+.++|.++ +++..+++.
T Consensus       116 i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~  180 (591)
T PTZ00207        116 IEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS  180 (591)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              68999999999999998877664 788899997 78999999999999999975 555555543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.77  E-value=8.6e-17  Score=153.81  Aligned_cols=293  Identities=13%  Similarity=0.100  Sum_probs=184.2

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccc----ccCC-hHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGR-KPV  114 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~Gr-r~~  114 (407)
                      ++.+.-.+..+...+......++++ ++.+.+|++...      +|.+..+.-+.-++..|+.|.++|    |+|| |+.
T Consensus         6 ~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~------vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~   79 (473)
T PRK10429          6 TTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGL------VGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPW   79 (473)
T ss_pred             hHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchh
Confidence            3334333455555666666677666 556677999999      999999999999999999999999    6698 556


Q ss_pred             HHHHHHHHHHHHHHhhccc------hHHHHHHHHHHHhhhccchhH-HHHHHhhhc-cccchhhhhHHHHHHHHHHHHHH
Q 015396          115 IIMGTASVVIFNTLFGLSV------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIF-REEHQALGLSTVSTAWGIGLIIG  186 (407)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~  186 (407)
                      ++++.+..+++..++...+      .++.+++..++.+++.....+ -.++..|.. ++++|.+..++-..+.++|..+.
T Consensus        80 il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~  159 (473)
T PRK10429         80 ILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVT  159 (473)
T ss_pred             HhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777777765554322      134455556666776656555 488899998 58999999988777777776666


Q ss_pred             HHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCCCCCCcchhhhhhhhhhhchhhhh
Q 015396          187 PALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVK  265 (407)
Q Consensus       187 ~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (407)
                      +.+...+.+       .+|...  ...+|+....+.++..++.. +..+..||.+.....+.++++              
T Consensus       160 ~~~~~~~~~-------~~g~~~--~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~--------------  216 (473)
T PRK10429        160 AGFTLPFVN-------YVGGGD--RGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGS--------------  216 (473)
T ss_pred             HHHHHHHHH-------HhCCCc--hhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccccc--------------
Confidence            655544432       111100  02234544455555544433 334446665322111100000              


Q ss_pred             hhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHH
Q 015396          266 EEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYP  345 (407)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~  345 (407)
                        +.+.....+.+++|+.++..++..++............++|....     .+ +....+.+....+++.+++. ++.+
T Consensus       217 --~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~-----~~-~~~~~~~~~~~~~i~~ii~~-~~~~  287 (473)
T PRK10429        217 --HLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYV-----IG-DADLFPYYLSYAGAANLVTL-ILFP  287 (473)
T ss_pred             --CCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEE-----CC-CHHHHHHHHHHHHHHHHHHH-HHHH
Confidence              001112345567898888887777777665555555555444332     22 45556667776667777776 4789


Q ss_pred             HHHHHhchhHHHHHHHHHHHHHHhhh
Q 015396          346 FLERILGPIMVARIAGVLTIPLLTSY  371 (407)
Q Consensus       346 ~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (407)
                      ++.||+|+|+.+..+..+..++.+.+
T Consensus       288 ~l~~r~gkk~~~~~~~~~~~~~~~~~  313 (473)
T PRK10429        288 RLVKSLSRRILWAGASIFPVLSCGVL  313 (473)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999887777655554443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.76  E-value=1.5e-16  Score=146.14  Aligned_cols=202  Identities=17%  Similarity=0.243  Sum_probs=163.0

Q ss_pred             ccCCCCchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhh--cccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccC
Q 015396           33 DTKSGLPITELFSIWIIVLCTALPISSLFPFLYFMIKDF--QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG  110 (407)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G  110 (407)
                      .+.++.+||.++...+..++.....+++.+..-++.+++  +.+.+.      .|++.++..++.+++++.+|+++.|.+
T Consensus        26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~f------fG~viaa~slg~~i~~liF~~Ws~k~~   99 (488)
T KOG2325|consen   26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATF------FGLVIAASSLGHAIFSLIFGIWSNKTG   99 (488)
T ss_pred             ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcch------hhHHHHHHHHHHHhcchhhcccccccC
Confidence            344567889999999999999999999999998888884  445555      999999999999999999999999999


Q ss_pred             C-hHHHHHHHHHHHHHHHHh-hc---cc-hHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHH
Q 015396          111 R-KPVIIMGTASVVIFNTLF-GL---SV-NFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLI  184 (407)
Q Consensus       111 r-r~~~~~~~~~~~~~~~~~-~~---~~-~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  184 (407)
                      . |+.++.+.++..++++++ ++   .+ ..+.++++|++.|+|.+......+|+++....++|.++++....+..+|..
T Consensus       100 ~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~i  179 (488)
T KOG2325|consen  100 SVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGII  179 (488)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHH
Confidence            7 888999999999999988 33   23 678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcCCCCCCCCccccccc--ccCCCChhHHHHHHHHHHHHHH-HHhccccCCCCCCC
Q 015396          185 IGPALGGFLAQPAEKYPNLFSSESL--FGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHND  245 (407)
Q Consensus       185 ~~~~~~~~l~~~~~~~~~~~gw~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~  245 (407)
                      +||.++..+....+     -|+...  ..-+.+..+.++.+++.++.++ +.++++|.++...+
T Consensus       180 lGp~~q~~f~~Lg~-----~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~  238 (488)
T KOG2325|consen  180 LGPTIQLAFTPLGE-----KGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIID  238 (488)
T ss_pred             HhHHHHHHHhhhcC-----CceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccc
Confidence            99999988876331     122211  1023366777888888777554 45667777665443

>TIGR00788 fbt folate/biopterin transporter

Probab=99.75  E-value=2.1e-16  Score=150.32  Aligned_cols=299  Identities=14%  Similarity=0.044  Sum_probs=188.4

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccC-----ChH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKP  113 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G-----rr~  113 (407)
                      +...+..+...++..++.........+.+.+++|+++++      ++...+...+...+-.+ +|+++||++     ||+
T Consensus        24 ~~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~------i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~   96 (468)
T TIGR00788        24 PRVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGAR------YQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRW   96 (468)
T ss_pred             cchHHHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchH
Confidence            334455666677788887333444455667789999999      98989999999887555 999999998     777


Q ss_pred             HHHHHHHHHH-HHHHHhhccchHH-HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhH---HHHHHHHHHHHHHH
Q 015396          114 VIIMGTASVV-IFNTLFGLSVNFW-MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLS---TVSTAWGIGLIIGP  187 (407)
Q Consensus       114 ~~~~~~~~~~-~~~~~~~~~~~~~-~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~---~~~~~~~~g~~~~~  187 (407)
                      .++++.++.. ++....+..++.. ...+.+++.+++.+...++ .++..|..+ +++....+   ......++|..+|+
T Consensus        97 ~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~  175 (468)
T TIGR00788        97 YLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISS  175 (468)
T ss_pred             HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHH
Confidence            7777776663 4444444444533 4444778889988887775 999999998 55544333   33344458999999


Q ss_pred             HhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhh
Q 015396          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEE  267 (407)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (407)
                      .++|.+.+                +.+|+..+++.++..++..+...+++|+++....+..+.+.....  .......+.
T Consensus       176 ~l~G~l~~----------------~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~--~~~~~~~~~  237 (468)
T TIGR00788       176 LLGGPLLD----------------KTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMA--LLTLGVLAN  237 (468)
T ss_pred             HHHHHHHH----------------hcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhh--hhhhhHHHH
Confidence            99999998                344555557777766666555677788642111110000000000  000000000


Q ss_pred             hcccccccccccccchhHHHHHHHHH-HhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHH
Q 015396          268 EGREATPKKSLLKNWPLMSSIIVYCV-FSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPF  346 (407)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~  346 (407)
                      .++.....+..+++|.++...+..++ +.......   .+.++..+   ..+|+++.+.|......+++.+++.. ..++
T Consensus       238 ~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~---~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~-~~~~  310 (468)
T TIGR00788       238 VKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGAS---GSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVG-GYDR  310 (468)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCC---ceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHH-HHHH
Confidence            00111233445677888775555554 22221111   11111111   23899999999999999999999986 6677


Q ss_pred             HHHHhchhHHHHHHHHHHHHHHhh
Q 015396          347 LERILGPIMVARIAGVLTIPLLTS  370 (407)
Q Consensus       347 l~~~~~~~~~~~~~~~~~~~~~~~  370 (407)
                      ..+|++.|+.+.++.++.+++...
T Consensus       311 ~~~~~~~r~~l~~~~~l~~~~~~~  334 (468)
T TIGR00788       311 FLKTFPYRLLFGVTTLLYTLSSLF  334 (468)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHhC
Confidence            778999999999988888776644

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.75  E-value=1.1e-15  Score=143.88  Aligned_cols=149  Identities=16%  Similarity=0.262  Sum_probs=121.3

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc-CChHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMG  118 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~~~~~  118 (407)
                      +.+..++...+...+..+.....+|.+ .+++|.++.+      .+.+.+.+.....++.+++|+++||+ ||||+++++
T Consensus         9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG   82 (493)
T PRK15462          9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------AYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG   82 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            556666777777777777788888855 5678999998      99999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHhhccc-hHHHHHHHHHHHhhhccchhH-HHHHHhhhcccc--chhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          119 TASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREE--HQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      .++..++.++.+..+ +...+++...+.+++.|...+ ..++++|.+|++  +|..++++.+...++|..++|.+.+++.
T Consensus        83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~  162 (493)
T PRK15462         83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ  162 (493)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887766543 223344444445566666656 488999999975  6999999999999999999999999998


Q ss_pred             C
Q 015396          195 Q  195 (407)
Q Consensus       195 ~  195 (407)
                      +
T Consensus       163 ~  163 (493)
T PRK15462        163 E  163 (493)
T ss_pred             h
Confidence            8

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.74  E-value=1.1e-16  Score=151.38  Aligned_cols=272  Identities=15%  Similarity=0.134  Sum_probs=196.4

Q ss_pred             hHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccc----ccCChHH-HHHHHHHHHHHHHHhhcc-c---
Q 015396           63 FLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPV-IIMGTASVVIFNTLFGLS-V---  133 (407)
Q Consensus        63 ~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~Grr~~-~~~~~~~~~~~~~~~~~~-~---  133 (407)
                      ..+.+.+.+|+++..      .|++..+..+..++..|+.|.++|    |+||||. ++++.+..+++.+++... +   
T Consensus        24 ~~~f~~~~~gl~~~~------~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~   97 (428)
T PF13347_consen   24 LLYFYTDVLGLSPAL------AGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGL   97 (428)
T ss_pred             HHHHHHHHcCCCHHH------HHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchh
Confidence            345677888999998      999999999999999999999999    8998665 456778888877777655 3   


Q ss_pred             ----hHHHHHHHHHHHhhhccchhH-HHHHHhhhcc-ccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccc
Q 015396          134 ----NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSE  207 (407)
Q Consensus       134 ----~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~  207 (407)
                          ...++.+..++..++...... ..++..|..+ +++|.+..+.-..+..+|..+...+.+.+.+..++...     
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~-----  172 (428)
T PF13347_consen   98 SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDT-----  172 (428)
T ss_pred             hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcc-----
Confidence                233456666666777666555 4899999997 57999999999999999998777777777652221100     


Q ss_pred             ccccCCCChhHHHHHHHHHHHHHH-HHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHH
Q 015396          208 SLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS  286 (407)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (407)
                          ..+|+....+.+++.++..+ ..+..+|.++..+++++                   +.+..+..+++++||+++.
T Consensus       173 ----~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~-------------------~~~~~~~~~~~~~nr~~~~  229 (428)
T PF13347_consen  173 ----SNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK-------------------KISLRDSLRSLFRNRPFRI  229 (428)
T ss_pred             ----chHHHHHHHHHHHHHHHHhhhhhheeeecccccccccc-------------------ccccccchhhhcccchHHH
Confidence                12466666666666665443 45566772111111111                   1123446788899999999


Q ss_pred             HHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHH
Q 015396          287 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (407)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  366 (407)
                      ..+..++............++|.+..     .|.+ ...+.+.....++.+++. ++.+++.||+|+|+.+..+..+.++
T Consensus       230 l~~~~~~~~~~~~~~~~~~~y~~~~v-----l~~~-~~~~~~~~~~~~~~~v~~-~~~~~l~~r~gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  230 LLLAFFLQWLAFALMNTFLPYYFTYV-----LGNE-GLISIFMLIFFVASIVGS-PLWGRLSKRFGKKKVYIIGLLLAAL  302 (428)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHH-----hcCc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHccceeehhhhHHHHHH
Confidence            98888888877777777777776665     4433 455666677777777776 4889999999999999999999988


Q ss_pred             HHhhhhHHH
Q 015396          367 LLTSYPYIA  375 (407)
Q Consensus       367 ~~~~~~~~~  375 (407)
                      +.+.+.+..
T Consensus       303 ~~~~~~~~~  311 (428)
T PF13347_consen  303 GFLLLFFLG  311 (428)
T ss_pred             HHHHHHHHH
Confidence            888776665

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.73  E-value=7.8e-16  Score=139.91  Aligned_cols=295  Identities=15%  Similarity=0.128  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      +..+......+..++..+...|..+...++ .|++.++      +|.+.++..+...+.+|+.|.++||+|.||-++...
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~------iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i   80 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTE------IGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI   80 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHH------HHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence            456667777777788889999999977764 8999999      999999999999999999999999999776655443


Q ss_pred             HHHH--HHH-HHhhccchH-HHHHHHHHHHhhh----ccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhh
Q 015396          120 ASVV--IFN-TLFGLSVNF-WMAVLTRFLLGSL----NGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (407)
Q Consensus       120 ~~~~--~~~-~~~~~~~~~-~~l~~~r~l~G~~----~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (407)
                      ....  .+. +...+.+-. ..+.++-++.|+.    .....+. -+++.++.  ++.+.-.|-..+..++|.+++..++
T Consensus        81 ~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~  158 (412)
T PF01306_consen   81 AILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLA  158 (412)
T ss_dssp             HHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHh
Confidence            3222  122 221222111 1122222333333    2233333 44444433  3445567778889999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhcc-ccCCCCCCCCcchhhhhhhhhhhchhhhhhhhc
Q 015396          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (407)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (407)
                      |.+.+.                 +....+++..+.+++..++.... |+.++..+..+.+.++.              ++
T Consensus       159 G~L~~i-----------------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~--------------~~  207 (412)
T PF01306_consen  159 GILFNI-----------------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKK--------------DK  207 (412)
T ss_dssp             HHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------------------
T ss_pred             heeeee-----------------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCC--------------CC
Confidence            999861                 12233455555544444443333 33333221111100000              00


Q ss_pred             ccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015396          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~  349 (407)
                      ...+...+++|+|++|...+...........+...++.|.......  .+.+....|++.+..-+...+.. .+.+++.+
T Consensus       208 ~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~--~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~  284 (412)
T PF01306_consen  208 VSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQS--AGQGNQMYGYLWSVQVFLEALMM-FFSPWLIN  284 (412)
T ss_dssp             --HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             CcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccChhHHhHHHHHHHHHHHHHH-HHHHHHHH
Confidence            1122456789999999988777666666666666667666543222  45667789999999888888887 48999999


Q ss_pred             HhchhHHHHHHHHHHHHHHhhhhHHHhh
Q 015396          350 ILGPIMVARIAGVLTIPLLTSYPYIAML  377 (407)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (407)
                      |+|.|+.+.++..++.+=....++.++.
T Consensus       285 rig~k~~Lllag~i~~iRi~~~~~~~~~  312 (412)
T PF01306_consen  285 RIGAKNLLLLAGVIMAIRIIGSGFATNP  312 (412)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHT--SH
T ss_pred             hcChHhHHHHHHHHHHHHHHHHhhhcch
Confidence            9999999999988888777766655543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09848 glucuronide transporter; Provisional

Probab=99.73  E-value=3e-15  Score=142.46  Aligned_cols=288  Identities=18%  Similarity=0.132  Sum_probs=173.5

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc----CCh
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY----GRK  112 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----Grr  112 (407)
                      .++++.+.-.+..+..........++++ ++.+.+|++..+      +|.+.+...+..++..++.|+++||.    |||
T Consensus         5 ~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~------~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~   78 (448)
T PRK09848          5 LSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAA------AGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKF   78 (448)
T ss_pred             ccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHhhhhheeeeecCCCCCcCc
Confidence            3445554444455555566656656555 566678999999      99999999999999999999999996    777


Q ss_pred             HHH-HHHHHHHHHHHHHh-hc----cc--hHHHHHHHHHHHhhhccchhH-HHHHHhhhcc-ccchhhhhHHHHHH----
Q 015396          113 PVI-IMGTASVVIFNTLF-GL----SV--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTA----  178 (407)
Q Consensus       113 ~~~-~~~~~~~~~~~~~~-~~----~~--~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~----  178 (407)
                      |.. .++.+...+..++. ..    ..  ..+.+++..++.+++.+...+ ..++..+..+ +++|.+..+.-..+    
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~  158 (448)
T PRK09848         79 RPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLT  158 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            654 55555444443332 21    11  223344455667777666655 3666666664 56788876665443    


Q ss_pred             -HHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHH-HHHHhccccCCCCCCCCcchhhhhhhh
Q 015396          179 -WGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDA  256 (407)
Q Consensus       179 -~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~  256 (407)
                       ..++..++|.+++.....       .       ...|.....+.++..++. ++.....||+++.+.++.         
T Consensus       159 ~~~~~~~~~p~i~~~~g~~-------~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~~~---------  215 (448)
T PRK09848        159 FVCLAFLIGPSIKNSSPEE-------M-------VSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQP---------  215 (448)
T ss_pred             HHHHHHHHHHHHHHhCCCc-------h-------hhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCccCC---------
Confidence             334555666665543210       0       001111112222332222 222334455432211100         


Q ss_pred             hhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHH
Q 015396          257 LESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSL  336 (407)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~  336 (407)
                                   .....++.+++||+++...+..++............+.|.++.     +|.++...++......++.
T Consensus       216 -------------~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~  277 (448)
T PRK09848        216 -------------SLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYV-----LNDTGLFTVLVLVQNLVGT  277 (448)
T ss_pred             -------------CHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeee-----cCChHHHHHHHHHHHHHHH
Confidence                         0112356788999998888877777766666666666666654     6666655554444445556


Q ss_pred             HHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhH
Q 015396          337 LVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  373 (407)
Q Consensus       337 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (407)
                      +++. ++.+++.||+++|+.+.++..+..++.+.+.+
T Consensus       278 ~~~~-~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~  313 (448)
T PRK09848        278 VASA-PLVPGMVARIGKKNTFLIGALLGTCGYLLFFW  313 (448)
T ss_pred             HHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            6665 47889999999999999998887777665544

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.72  E-value=1.6e-15  Score=139.25  Aligned_cols=301  Identities=17%  Similarity=0.156  Sum_probs=213.5

Q ss_pred             CCchHHHHHHHHHHHHhhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc----cCC
Q 015396           37 GLPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGR  111 (407)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr----~Gr  111 (407)
                      +.+.++.+.-....+...........++. ++.+.+|+++..      +|.+..+.=+--++.-|+.|.++||    +||
T Consensus         8 kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~------aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr   81 (467)
T COG2211           8 KLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAAL------AGTIFLVARIIDAITDPIMGFIVDRTRSRWGR   81 (467)
T ss_pred             cccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHH------HHHHHHHHHHHHHHhcchheeeeccccccccc
Confidence            45556666555566666666666666666 666788999998      9999888888899999999999995    787


Q ss_pred             h-HHHHHHHHHHHHHHHHhhccch------HHHHHHHHHHHhhhccchhH-HHHHHhhhcc-ccchhhhhHHHHHHHHHH
Q 015396          112 K-PVIIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIG  182 (407)
Q Consensus       112 r-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g  182 (407)
                      + +.++++.+..++.+.++-.+++      ....++...+.+++...... -.++.+|+.+ ++||.+..++-+...++|
T Consensus        82 fRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g  161 (467)
T COG2211          82 FRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLG  161 (467)
T ss_pred             ccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHH
Confidence            4 5567777888888887776653      45566677888887666444 4788888885 789999999999999999


Q ss_pred             HHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhch
Q 015396          183 LIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESAS  261 (407)
Q Consensus       183 ~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  261 (407)
                      ..+...+...+....++...         ..+|+....+.++++++..+. .+-.+|...+....++..           
T Consensus       162 ~~l~~~~~~plv~~~g~~~~---------~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~-----------  221 (467)
T COG2211         162 GLLVAVLFPPLVKLFGGGDK---------ALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGV-----------  221 (467)
T ss_pred             HHHHHHHHHHHHHHhCCCcc---------hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccc-----------
Confidence            88777777666653222111         335665556666666655443 444566554222111100           


Q ss_pred             hhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHH
Q 015396          262 AEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQL  341 (407)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~  341 (407)
                            +.+.......+++|++++..++...+.........+...+|.+..     +|.+.............+.+++. 
T Consensus       222 ------~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~-----lg~~~l~~~~~~~~~~~~~l~~~-  289 (467)
T COG2211         222 ------KLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYV-----LGDPELFAYLLLLASGAGLLIGL-  289 (467)
T ss_pred             ------cccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEE-----cCChHHHHHHHHHHHHHHHHHHH-
Confidence                  001112334678999999988877777777777777777777665     67777777777777666666655 


Q ss_pred             hHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHH
Q 015396          342 SLYPFLERILGPIMVARIAGVLTIPLLTSYPYIA  375 (407)
Q Consensus       342 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (407)
                      ++.+++.+|+|+|++..++.++..++.+.+.+..
T Consensus       290 ~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~  323 (467)
T COG2211         290 ILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP  323 (467)
T ss_pred             HhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc
Confidence            5889999999999999999999999888877766

>PRK11462 putative transporter; Provisional

Probab=99.70  E-value=1.3e-14  Score=138.04  Aligned_cols=283  Identities=14%  Similarity=0.042  Sum_probs=175.8

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc----cCCh
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRK  112 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr----~Grr  112 (407)
                      .++++.+.-.+..+...+.......++. ++.+.+|+++..      +|.+..+.-+--++..|+.|.++||    +|||
T Consensus         6 l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~------~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~   79 (460)
T PRK11462          6 LSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGF------VGTMFLVARALDAISDPCMGLLADRTRSRWGKF   79 (460)
T ss_pred             ccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHH------HHHHHHHHHHHHHHHhhhheehhccCCCCCCCc
Confidence            3444444333444444554555555554 667888999998      9999999999999999999999995    7886


Q ss_pred             HH-HHHHHHHHHHHHHHhhccch------HHHHHHHHHHHhhhccchhH-HHHHHhhhcc-ccchhhhhHHHHHHHHHHH
Q 015396          113 PV-IIMGTASVVIFNTLFGLSVN------FWMAVLTRFLLGSLNGLLGP-IKAYACEIFR-EEHQALGLSTVSTAWGIGL  183 (407)
Q Consensus       113 ~~-~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~  183 (407)
                      |. ++++.+..+++.+++...++      ...+.+..++..++...... -.++.+|..+ +++|.+..++...+..+|.
T Consensus        80 rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~  159 (460)
T PRK11462         80 RPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGG  159 (460)
T ss_pred             chhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence            55 55666777777665544332      34555566666766555444 4888899887 7899999999999999998


Q ss_pred             HHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchh
Q 015396          184 IIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASA  262 (407)
Q Consensus       184 ~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  262 (407)
                      .+++.+...+.+..++...         ..+|+....+.+++.++.... ....+|.++..+++.               
T Consensus       160 ~~~~~~~~plv~~~g~~~~---------~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~---------------  215 (460)
T PRK11462        160 MLSTVLMMPLVNLIGGDNK---------PLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTT---------------  215 (460)
T ss_pred             HHHHHHHHHHHHHhCCCch---------hhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccCC---------------
Confidence            8888777665542111000         234555445555555444333 333455332111100               


Q ss_pred             hhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHh
Q 015396          263 EVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLS  342 (407)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~  342 (407)
                             +.....+..++|+.++......++.............+|....     .| +....+.+.....++.+++. +
T Consensus       216 -------~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~-----~g-~~~~~~~~l~~~~i~~iig~-~  281 (460)
T PRK11462        216 -------SMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWI-----LG-TPEVFVAFLTTYCVGNLIGS-A  281 (460)
T ss_pred             -------CHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh-----cC-ChHHHHHHHHHHHHHHHHHH-H
Confidence                   0112345677888887776555555544444444444443332     23 23334556666777777776 4


Q ss_pred             HHHHHHHHhchhHHHHHHHHHH
Q 015396          343 LYPFLERILGPIMVARIAGVLT  364 (407)
Q Consensus       343 ~~~~l~~~~~~~~~~~~~~~~~  364 (407)
                      +.+++.||+++|+....+....
T Consensus       282 l~~~l~~r~gkk~~~~~~~~~~  303 (460)
T PRK11462        282 LAKPLTDWKCKVTIFWWTNALL  303 (460)
T ss_pred             HHHHHHHHhChHHHHHHHHHHH
Confidence            8899999999988866544433

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.70  E-value=1e-14  Score=130.57  Aligned_cols=291  Identities=12%  Similarity=0.084  Sum_probs=193.7

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      |..++...+..+.+.+....+.+...+...-+| +.+.      .-|...+|++.+....+++-|+.||+|-|...+++.
T Consensus        44 W~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~------~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt  116 (480)
T KOG2563|consen   44 WVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSA------ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT  116 (480)
T ss_pred             hHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHH------HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence            333445556666666777777777777778888 5555      789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccc------hHH--HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhh
Q 015396          120 ASVVIFNTLFGLSV------NFW--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (407)
Q Consensus       120 ~~~~~~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (407)
                      .+.+++..+-..+.      .++  ....+..+.+.++-..... ..+..-||++++|..+..+-.++..+|.++|.++.
T Consensus       117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp  196 (480)
T KOG2563|consen  117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP  196 (480)
T ss_pred             HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence            99999998776643      344  5556677777776665555 56677799999999999999999999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhc
Q 015396          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEG  269 (407)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (407)
                      ..+..+..+.. ...|       .....++...++..+.+ +..+..++.|+.........+.               ..
T Consensus       197 pilV~~~~~~~-~~~~-------~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------------~~  253 (480)
T KOG2563|consen  197 PILVPSSKDSE-DNSW-------LFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------------DA  253 (480)
T ss_pred             ceecCCCCCcc-hhHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------------cC
Confidence            99987542111 1111       11112333333333322 2233334444333222111100               11


Q ss_pred             ccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015396          270 REATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLER  349 (407)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~  349 (407)
                      +-.+..++.++|+++....+++.+......+..+.+-.-+..      .|++...+|+......+++++++. +.+.+.|
T Consensus       254 ~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~------sgY~~~~aG~ig~l~iv~Gmlga~-~~gii~D  326 (480)
T KOG2563|consen  254 SFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCP------SGYEGVFAGYIGALMIVAGMLGAL-ASGIIAD  326 (480)
T ss_pred             cHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhcccc------ccCCccccchhHHHHHHHHHHHHH-HHHhhhh
Confidence            134567889999999888887777555544444333222221      466778889999999999999986 6777777


Q ss_pred             Hhch-hHHHHHHHHHHHHH
Q 015396          350 ILGP-IMVARIAGVLTIPL  367 (407)
Q Consensus       350 ~~~~-~~~~~~~~~~~~~~  367 (407)
                      |.+. |..+.+......++
T Consensus       327 ktk~fk~~~~v~~~~~~v~  345 (480)
T KOG2563|consen  327 KTKKFKLTTLVLYLFALVG  345 (480)
T ss_pred             hhhhHHHHHHHHHHHHHHH
Confidence            7654 44444444444444

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.69  E-value=5.3e-17  Score=135.89  Aligned_cols=289  Identities=13%  Similarity=0.125  Sum_probs=190.7

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-cCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~  119 (407)
                      ..+..+++..|-+++.+........++..+.+++.++      ..++.+.|.....+.+.+.|++.|| +|-|..-++-+
T Consensus        44 m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~ak------ftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~  117 (459)
T KOG4686|consen   44 MALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAK------FTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILC  117 (459)
T ss_pred             HHHHHHHHhcccceeecCCchhhhhhhhcccccceee------eeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHH
Confidence            3444566777777788888888888999999999988      8899999999999999999999996 57676655555


Q ss_pred             HHHHHHHHHhhc---cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          120 ASVVIFNTLFGL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       120 ~~~~~~~~~~~~---~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +...++.++++.   .+.+|.+.++|++.|+|.-...++ ..+...|+..|+.+.++|+......+|..+--.+.+++.+
T Consensus       118 ~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  118 IFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence            566667666654   688999999999999987777776 9999999999999999999999999999988777777776


Q ss_pred             CCCCCCCcccccccccCCCChhHH-HHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccc
Q 015396          196 PAEKYPNLFSSESLFGKFPYFLPC-LCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATP  274 (407)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (407)
                      ..+.   .++-.. -...|.+..+ .......++.....-+..+..+....+             ++...   .+..+..
T Consensus       198 ~~~~---~~~~~g-hT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~-------------e~g~~---Ge~pkLt  257 (459)
T KOG4686|consen  198 TMGR---MFPGVG-HTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHL-------------EEGFL---GEEPKLT  257 (459)
T ss_pred             HHHH---hcccch-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh-------------hcCcc---cCCcccc
Confidence            3211   000000 0000000000 001111111111111111110000000             00000   0011112


Q ss_pred             cccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchh
Q 015396          275 KKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI  354 (407)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  354 (407)
                      ...-+ .|++|...+..+++.....-+.+.-+.+.++.     +|+|+..++-+.+.......+.+ ++.+.++||.|++
T Consensus       258 dv~~f-~ppfw~~~iicv~yyva~fPFi~lg~~fF~~r-----fGlS~~~a~~i~s~vy~Isav~s-pvfg~i~Dk~G~n  330 (459)
T KOG4686|consen  258 DVNTF-YPPFWVLVIICVLYYVAWFPFITLGPMFFQKR-----FGLSAVSAGNILSTVYGISAVLS-PVFGAISDKYGFN  330 (459)
T ss_pred             ccccc-CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-----hCCChhhccchhhhhhhhhhhhh-hhHHHhHhhhcce
Confidence            22222 37788888888888877777776667666655     99999999988887777777666 4889999999988


Q ss_pred             HHHHHHHH
Q 015396          355 MVARIAGV  362 (407)
Q Consensus       355 ~~~~~~~~  362 (407)
                      ...+.+..
T Consensus       331 ~~wv~~a~  338 (459)
T KOG4686|consen  331 LWWVASAC  338 (459)
T ss_pred             ehhHHHHH
Confidence            66655443

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.68  E-value=2.6e-14  Score=133.38  Aligned_cols=329  Identities=19%  Similarity=0.274  Sum_probs=209.9

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~  124 (407)
                      ...+-.+...+......+..+.....++.+..+. .....+.-.....+...+.++..|.++||+|||..+....+...+
T Consensus        26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~-~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l  104 (463)
T KOG2816|consen   26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLE-NGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTIL  104 (463)
T ss_pred             HHHHHHHHHHhcCcchhhhhhhhhcccccCccch-hhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHH
Confidence            4445555555555555666666666655444331 111133333233677789999999999999999999999998888


Q ss_pred             HHHHhhccchHHHHHHHHHHHhhhccc---hhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 015396          125 FNTLFGLSVNFWMAVLTRFLLGSLNGL---LGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (407)
Q Consensus       125 ~~~~~~~~~~~~~l~~~r~l~G~~~g~---~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  201 (407)
                      ..+...+..  |++++   +.|+..+.   .....++++|....++|....++.+.....+..++|.+++.+..      
T Consensus       105 ~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~------  173 (463)
T KOG2816|consen  105 PALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK------  173 (463)
T ss_pred             hHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------
Confidence            887776655  33333   55554333   33459999999999999999999999999999999999999998      


Q ss_pred             CcccccccccCCCChhHHHHHHHHHHHHHH-HHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccc
Q 015396          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (407)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (407)
                                ..+...++.+..+..++..+ ..+++||+....+.+......    ....... .+...+........-.
T Consensus       174 ----------~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~  238 (463)
T KOG2816|consen  174 ----------FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE----LTPGSLD-SSHVADAFQSLTKVGP  238 (463)
T ss_pred             ----------hcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccc----cCCCccc-chhhhhhhhhhcccCC
Confidence                      45566677777777776554 467789887655443100000    0000000 0001111112222223


Q ss_pred             cchhHHHHHHHHHHhhccch-hhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHH
Q 015396          281 NWPLMSSIIVYCVFSLHDMA-YSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARI  359 (407)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  359 (407)
                      +|..+..++..++....... .....+.|+..+     ++++..+.+.+.+..++...+++.+..+.+.+.++.++....
T Consensus       239 ~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~-----f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l  313 (463)
T KOG2816|consen  239 DRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAK-----FGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL  313 (463)
T ss_pred             CccchHHHHHHHHHHHHHhcCceeEEEEEEeee-----cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence            34444444444443333222 221335555555     899999999999999999999999888899999999998888


Q ss_pred             HHHHHHHHHhhhhHHHhhhhhhhHhhhh-----hhHHHHHHHhhcCCCCCC
Q 015396          360 AGVLTIPLLTSYPYIAMLSGFGLAFLLN-----CASVVKNLLSSSGPGSKR  405 (407)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~r  405 (407)
                      |...-.+....+.+.......+...++.     ......+..+....++.+
T Consensus       314 Gl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~  364 (463)
T KOG2816|consen  314 GLLSEFLQLLLFAFATETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQ  364 (463)
T ss_pred             HHHHHHHHHHHHHHhccchhhhHHHHHHHhhcchhHHHHhHHHhhcccccc
Confidence            9888888888887776555433322222     222334445555444443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.67  E-value=6.3e-15  Score=132.51  Aligned_cols=216  Identities=14%  Similarity=0.095  Sum_probs=152.7

Q ss_pred             ccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCc-ccccc
Q 015396          131 LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNL-FSSES  208 (407)
Q Consensus       131 ~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-~gw~~  208 (407)
                      ...+++.++++-++.|.|.+...+. +.++++..|+|++.+.+++.+..+++|..++|.+++.+.......... .+-..
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            4578999999999999999998885 999999999999999999999999999999999999988521100000 00000


Q ss_pred             cccCCCChhHHHHHHHHHHHHHHHHhcc--ccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHH
Q 015396          209 LFGKFPYFLPCLCISLFAFGVTIAAFWL--PETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS  286 (407)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (407)
                      .. .+.|+.++++.+...++..+.+.+.  ||.++++.  ++  ..               + ++....++.+++|.++.
T Consensus        86 ~~-~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~--~~--~~---------------~-~~~~~~~~~~~~~~~~l  144 (310)
T TIGR01272        86 AE-AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADV--AR--VS---------------S-GDTTQKTSAFQFTHLVL  144 (310)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccc--cc--cc---------------c-ccccchhhHHhhHHHHH
Confidence            00 1346666675555544433333333  43221110  00  00               0 00011234677888888


Q ss_pred             HHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHH
Q 015396          287 SIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (407)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  366 (407)
                      ..+..+++.....+...+.+.|+.+.   ..+|+++.+.+...+....+..+++. +++++.||+++++.+.++..+..+
T Consensus       145 ~~~~~f~yvg~e~~~~~w~~~yl~~~---~~~g~s~~~a~~~~s~~~~~~~iGr~-~~~~l~~r~g~~~~l~~~~~l~~~  220 (310)
T TIGR01272       145 GALGIFVYVGAEVSAGSFLVNFLSDP---HALGLPEDQAAHFTAYTWGGAMVGRF-IGSAVMPMISQGRYLAFNAFLAVL  220 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCHHHHHHHHHHHHHH
Confidence            88888888889999999999999643   12688999999999999999999985 999999999999988888777766


Q ss_pred             HHhhh
Q 015396          367 LLTSY  371 (407)
Q Consensus       367 ~~~~~  371 (407)
                      ..++.
T Consensus       221 ~~~l~  225 (310)
T TIGR01272       221 LSIGA  225 (310)
T ss_pred             HHHHH
Confidence            65444

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.67  E-value=6.4e-18  Score=161.37  Aligned_cols=313  Identities=16%  Similarity=0.206  Sum_probs=2.9

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~  124 (407)
                      .+++..+...+..+.....++.+.++|+++.++      .|++.+.+-++..+..++..++.+|..|-|.+-++.++.++
T Consensus         7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~------~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~   80 (539)
T PF03137_consen    7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQ------SGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGL   80 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHH
Confidence            445555666666667777888999999999999      99999999999999999999999998888899999999999


Q ss_pred             HHHHhhccc--------------------------------------------------hHHHHHHHHHHHhhhccchhH
Q 015396          125 FNTLFGLSV--------------------------------------------------NFWMAVLTRFLLGSLNGLLGP  154 (407)
Q Consensus       125 ~~~~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~g~~~~  154 (407)
                      +++++++-+                                                  -+..++++.++.|+|.....+
T Consensus        81 g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t  160 (539)
T PF03137_consen   81 GSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT  160 (539)
T ss_dssp             -----------------------------------------------------------------------SSS------
T ss_pred             HHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc
Confidence            988876410                                                  124578889999999999888


Q ss_pred             H-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC------cccc-cccccCCCChhHHHHHHHHH
Q 015396          155 I-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN------LFSS-ESLFGKFPYFLPCLCISLFA  226 (407)
Q Consensus       155 ~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~------~~gw-~~~~~~~~~~~~~~~~~~~~  226 (407)
                      . .+|+-|..++++-+..+|+......+|.++|-++++.+....-++..      .... +.-| -..||..+++.++..
T Consensus       161 LG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~W-vGAWWLGfli~g~~~  239 (539)
T PF03137_consen  161 LGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRW-VGAWWLGFLICGILL  239 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccH-HHHHHHHHHHHHHHH
Confidence            6 99999999999999999999999999999999999988864322111      0111 1111 345888888888888


Q ss_pred             HHHHHHHhccccCCCCCCCCcchhh--hhh-hhhhhc-hhhh------hhhhcccccccccccccchhHHHHHHHHHHhh
Q 015396          227 FGVTIAAFWLPETLHRHNDDDDSCD--VSY-DALESA-SAEV------KEEEGREATPKKSLLKNWPLMSSIIVYCVFSL  296 (407)
Q Consensus       227 ~~~~~~~~~~~e~~~~~~~~~~~~~--~~~-~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (407)
                      ++..+.++++|+..+...+.+++.+  +.+ ++.+.. .++.      .+..++-+...+.+++||.+....+.......
T Consensus       240 ~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~  319 (539)
T PF03137_consen  240 FLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF  319 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            7777777777765444311111111  000 000000 0011      11123345677889999999999999999999


Q ss_pred             ccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc--hhHHHHHHHHHHHHHHh
Q 015396          297 HDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLT  369 (407)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~  369 (407)
                      ...++.++.|.|++..     ++.++.+++++.....+.....+.++++++.+|++  .|..+....+...+..+
T Consensus       320 ~~~G~~tF~pKylE~Q-----F~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~  389 (539)
T PF03137_consen  320 IVSGFATFLPKYLESQ-----FGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVI  389 (539)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHH-----hCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999887     89999999998888777666666679999999875  45555555544444443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.65  E-value=7.8e-15  Score=141.05  Aligned_cols=174  Identities=15%  Similarity=0.241  Sum_probs=126.1

Q ss_pred             HHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHH-
Q 015396           51 LCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL-  128 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~-  128 (407)
                      +...........++|.+. +++|.+..+      .++..+...++..++.+..|+++||+|||+.+..+.++..++.+. 
T Consensus       260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  333 (490)
T PRK10642        260 IATNVTYYMLLTYMPSYLSHNLHYSEDH------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA  333 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            334445555666778665 567888776      777788888999999999999999999999988877654433322 


Q ss_pred             --hhccchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccc
Q 015396          129 --FGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (407)
Q Consensus       129 --~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g  205 (407)
                        ...+++...+++++++.|++.+.... ...++.|.+|++.|+++++.......+++.++|.+.+++.+.         
T Consensus       334 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~---------  404 (490)
T PRK10642        334 FILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES---------  404 (490)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence              22345677788889998887655444 477888999999999999975444556678899999988762         


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 015396          206 SESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (407)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (407)
                            ...|+.++++..+.+++.++..+++||++++..+
T Consensus       405 ------~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~  438 (490)
T PRK10642        405 ------TQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK  438 (490)
T ss_pred             ------hCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence                  1224555566666666666666778999887543

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.64  E-value=2.1e-15  Score=144.26  Aligned_cols=311  Identities=16%  Similarity=0.190  Sum_probs=237.4

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~  124 (407)
                      .+.+..+...+....+...+..+-+.|+++.++      .|++.+.+-++..+...+..++.-|.-|-|.+-++.++.++
T Consensus       101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~------sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen  101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQ------SGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCc------ceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            455666777777777778888999999999999      99999999999999999999999999999999999999999


Q ss_pred             HHHHhhccc-------------------------------------------------h--HH-HHHHHHHHHhhhccch
Q 015396          125 FNTLFGLSV-------------------------------------------------N--FW-MAVLTRFLLGSLNGLL  152 (407)
Q Consensus       125 ~~~~~~~~~-------------------------------------------------~--~~-~l~~~r~l~G~~~g~~  152 (407)
                      +++++++-+                                                 +  +| .++++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            999876521                                                 0  22 5677789999999998


Q ss_pred             hHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCC-CC-----cccccccccCCCChhHHHHHHHH
Q 015396          153 GPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PN-----LFSSESLFGKFPYFLPCLCISLF  225 (407)
Q Consensus       153 ~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~~-----~~gw~~~~~~~~~~~~~~~~~~~  225 (407)
                      .+. .+|+-|...+++-+..+|+......+|.++|-++++++.....++ ..     ..+-||   --.||.-|++.+.+
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrW---IGAWWlGFLi~g~~  331 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRW---IGAWWLGFLICGAL  331 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcch---hhHHHHHHHHHHHH
Confidence            886 999999999999999999999999999999999999998644332 11     112233   34588889999998


Q ss_pred             HHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhc--hhhh--hhhhcccccccccccccchhHHHHHHHHHHhhccchh
Q 015396          226 AFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESA--SAEV--KEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAY  301 (407)
Q Consensus       226 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (407)
                      .++..+.++++|+..++..++.+..+......++.  .++.  .+..++-++..+++++||.+...++...+......++
T Consensus       332 ~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~  411 (735)
T KOG3626|consen  332 LLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGY  411 (735)
T ss_pred             HHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhH
Confidence            88888888888877665433211111100000000  0000  0111234556788999999999999999999999999


Q ss_pred             hhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc--hhHHHHHHHHHHHHHHh
Q 015396          302 SEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG--PIMVARIAGVLTIPLLT  369 (407)
Q Consensus       302 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~  369 (407)
                      .+++|-|++..     +|.++..+..+....++.....+++++|++.+|+.  .|.......+...+.++
T Consensus       412 ~tFlPKyLE~Q-----fg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~  476 (735)
T KOG3626|consen  412 ITFLPKYLETQ-----FGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLL  476 (735)
T ss_pred             HHhhHHHHHHH-----cCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHH
Confidence            99999999887     99999999999988888888888889999999875  44444444444444433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.63  E-value=8.7e-15  Score=144.25  Aligned_cols=140  Identities=14%  Similarity=0.105  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhH-HHHHHhhhc
Q 015396           85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIF  163 (407)
Q Consensus        85 g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~  163 (407)
                      .+...+..++.+++.++.|+++||+|||++++++.++.++++++.++.++.+.+++.+++.|++.+...+ ..++++|++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~  677 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3445667788999999999999999999999999999999999988888888888888888887666555 499999999


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCC
Q 015396          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (407)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (407)
                      |++.|++++|+.+....+|.++||++++.+.+                . ....++++.++..++..++..++||+..
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~----------------~-~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAAVLGILIFGSFVG----------------I-TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------h-hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999999999999998875                1 2345667777766666666667788654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.62  E-value=3.4e-13  Score=118.78  Aligned_cols=275  Identities=15%  Similarity=0.106  Sum_probs=175.5

Q ss_pred             HHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 015396           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~  129 (407)
                      +.+......+..|..-.+.+++|.++.+      ++.+....+....+..++.|.++||+|||+.-+..+++.+++++. 
T Consensus        43 Y~La~~aDWLQGpY~Y~LY~~yg~~~~q------Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-  115 (354)
T PF05631_consen   43 YLLAMAADWLQGPYLYALYESYGFSEHQ------IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-  115 (354)
T ss_pred             HHHHHHHHHhhcchhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-
Confidence            3444556667778887777899999999      999999999999999999999999999999999999999999964 


Q ss_pred             hccchHHHHHHHHHHHhhhccchhHH--HHHHhhhccc----cchhhhhHHHH-HHHHHHHHHHHHhhhhhcCCCCCCCC
Q 015396          130 GLSVNFWMAVLTRFLLGSLNGLLGPI--KAYACEIFRE----EHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPN  202 (407)
Q Consensus       130 ~~~~~~~~l~~~r~l~G~~~g~~~~~--~~~~~~~~~~----~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~~~  202 (407)
                      -..++++.++++|++.|++......+  .-++.|.-..    +..+..++... ...++-.+++.+++.++.+..     
T Consensus       116 k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~-----  190 (354)
T PF05631_consen  116 KHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF-----  190 (354)
T ss_pred             HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh-----
Confidence            45688999999999999998886664  4466776432    22233333222 223333445555555555511     


Q ss_pred             cccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccccccc
Q 015396          203 LFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (407)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (407)
                               ..+...|+....+..++..+. ....+|+.....++.+..+.                  -...++.+.+|
T Consensus       191 ---------~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~------------------~~~a~~~i~~d  243 (354)
T PF05631_consen  191 ---------GFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGS------------------FREAWRAILSD  243 (354)
T ss_pred             ---------CCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHH------------------HHHHHHHHHcC
Confidence                     223355666666655554433 33446655432221111111                  11245667788


Q ss_pred             chhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHH
Q 015396          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAG  361 (407)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  361 (407)
                      |+++.+.++..++-.....+....     .|.... .+ ...-.|++++.+.+..++|+.+....+.++......+....
T Consensus       244 ~ril~LG~~qslFE~smy~FVflW-----tPaL~~-~~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~  316 (354)
T PF05631_consen  244 PRILLLGLIQSLFEGSMYLFVFLW-----TPALDP-DD-EELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVF  316 (354)
T ss_pred             chhHHHHHHHHHHHHHHHHheeee-----eceecC-CC-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            999888888888776654443222     222111 11 12347899999999999998633344555555555555555


Q ss_pred             HHHHHHHhh
Q 015396          362 VLTIPLLTS  370 (407)
Q Consensus       362 ~~~~~~~~~  370 (407)
                      .+..+++..
T Consensus       317 ~~aa~~l~~  325 (354)
T PF05631_consen  317 AVAAVSLAI  325 (354)
T ss_pred             HHHHHHHHH
Confidence            555444443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.62  E-value=1.5e-12  Score=122.97  Aligned_cols=299  Identities=17%  Similarity=0.132  Sum_probs=196.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH-HHHHHHHHHHHhhcc-chHHHH-HHHHHHHhhhccchhHH-H
Q 015396           81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIFNTLFGLS-VNFWMA-VLTRFLLGSLNGLLGPI-K  156 (407)
Q Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~-~~~~~~~~~~~~~~~-~~~~~l-~~~r~l~G~~~g~~~~~-~  156 (407)
                      +.+.++..++..+..++..|+.|.++|+-|+||.++. ...+..+++..+.+. ++.|.+ .+..++.-++.+...+. .
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn  148 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN  148 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446788889999999999999999999998776554 445555555555553 443433 33334444565566665 9


Q ss_pred             HHHhhhccccch--------------------------hhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccc
Q 015396          157 AYACEIFREEHQ--------------------------ALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (407)
Q Consensus       157 ~~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~  210 (407)
                      +++.|..+++++                          ++..+.-.....+|+.+.-.+.-.+....++.       . =
T Consensus       149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~-------~-~  220 (477)
T PF11700_consen  149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST-------A-S  220 (477)
T ss_pred             HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc-------c-c
Confidence            999999998888                          89888888888888888777766655422111       0 0


Q ss_pred             cCCCChhHHHHHHHHHHH-HHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHH
Q 015396          211 GKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSII  289 (407)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (407)
                      ..++.|..+.+.++..++ .+...+++||.|+.+..++...... ..           -++-....+++.+.|.+...++
T Consensus       221 ~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~-~g-----------~~~l~~t~k~~~~~~~~~~fLi  288 (477)
T PF11700_consen  221 NTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLR-FG-----------FKRLWRTFKEIRKLRQLFLFLI  288 (477)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHH-HH-----------HHHHHHHHHHHHhChHHHHHHH
Confidence            033457777777777655 4445667888776322221111000 00           0011224566677888999999


Q ss_pred             HHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchh--HHHHHHHHHHHHH
Q 015396          290 VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPI--MVARIAGVLTIPL  367 (407)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~  367 (407)
                      .++++.-...+...+...|..+.     +|++..+...+.....+.++++.+ +.+++.||+|.|  +.+.++..+..+.
T Consensus       289 a~~l~~dg~~ti~~~~~i~a~~~-----lg~s~~~l~~~~l~~~i~a~~Ga~-~~g~l~~r~g~k~~~~l~~~l~~~~~i  362 (477)
T PF11700_consen  289 AYFLYSDGVNTIISFAGIYATEV-----LGMSTTQLIVFGLVVQIVAIIGAL-LFGWLQDRFGPKTKRTLLISLILWIII  362 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-----cCcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            99998888888888888888876     899999999999999999999995 889999999998  7766666555332


Q ss_pred             HhhhhH--------HHhhhhhhhH-----hhh-hhhHHHHHHHhhcCCCCCC
Q 015396          368 LTSYPY--------IAMLSGFGLA-----FLL-NCASVVKNLLSSSGPGSKR  405 (407)
Q Consensus       368 ~~~~~~--------~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~p~~~r  405 (407)
                      .+.-.+        ......++..     +.. ..-+..+++++++.|+...
T Consensus       363 ~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e  414 (477)
T PF11700_consen  363 PLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE  414 (477)
T ss_pred             HHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh
Confidence            222111        1111112211     111 1224567889999998764

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.62  E-value=7e-15  Score=138.25  Aligned_cols=183  Identities=12%  Similarity=0.125  Sum_probs=131.2

Q ss_pred             HHHhhhhhhchhhhHHHHHHhhccccccc--chhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 015396           50 VLCTALPISSLFPFLYFMIKDFQIAKREE--DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~  127 (407)
                      .++............+.+.++.|.++...  ......+...++..++..++.++.|+++||+|||+++..+.++.+++..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~  296 (418)
T TIGR00889       217 SMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFG  296 (418)
T ss_pred             HHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            33333333344456676777777554210  0001178999999999999999999999999999999999999888876


Q ss_pred             Hhhccc----hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHH-HHHHHHHHHHHHhhhhhcCCCCCCC
Q 015396          128 LFGLSV----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYP  201 (407)
Q Consensus       128 ~~~~~~----~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~~~~~~~  201 (407)
                      +.....    +++.+++.+++.|++.+...+. ..++.|++|+++|++++++.+ ...++|..+||+++|++.+..++..
T Consensus       297 l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~  376 (418)
T TIGR00889       297 FFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYG  376 (418)
T ss_pred             HHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccc
Confidence            666532    2466778899999998887775 889999999999999999997 6789999999999999998322110


Q ss_pred             CcccccccccCCCChhHHHHHHHHHHH-HHHHHhccccCCCC
Q 015396          202 NLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHR  242 (407)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~  242 (407)
                       .         ++|+..+.+.++..++ .++..+++||+.+.
T Consensus       377 -~---------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~  408 (418)
T TIGR00889       377 -T---------FDWQTMWLFFAGYIAILAVLFMIFFKYSHNA  408 (418)
T ss_pred             -C---------CchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence             1         2345544666666554 44455667766443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.61  E-value=3.8e-14  Score=132.54  Aligned_cols=159  Identities=15%  Similarity=0.193  Sum_probs=124.4

Q ss_pred             hhchhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchH
Q 015396           57 ISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (407)
Q Consensus        57 ~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~  135 (407)
                      ...+....|.+ .+++|.++.+      .+++.+...++..++.++.|+++||+|||+.+..+.+...+........++.
T Consensus       232 ~~~~~~~~p~~l~~~~~~~~~~------~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~  305 (393)
T PRK15011        232 NSLYIINMPLFIINELHLPEKL------AGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSP  305 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34445566744 4678988887      8888888778888899999999999999998887766666555555556788


Q ss_pred             HHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCC
Q 015396          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (407)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (407)
                      +.+++.+++.+++.|...+. ..+..|.+|+ +|++++++.+....+|..++|.++|.+.+                .++
T Consensus       306 ~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~----------------~~g  368 (393)
T PRK15011        306 AILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAE----------------IWN  368 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hhh
Confidence            88888898888877665554 7778898885 59999999988899999999999999998                445


Q ss_pred             ChhHHHHHHHHHHHHHHHHhcccc
Q 015396          215 YFLPCLCISLFAFGVTIAAFWLPE  238 (407)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e  238 (407)
                      |+.++.+.++..++.++..++.||
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        369 YHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcC
Confidence            566667777777777777666664

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.58  E-value=1.1e-14  Score=115.12  Aligned_cols=135  Identities=33%  Similarity=0.577  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc
Q 015396           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (407)
Q Consensus        88 ~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~  166 (407)
                      .+.+.++..+++++.|++.||+|||+.+..+.....++.+.....++.+.+.+.+++.|++.+...+. ..++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            34566788899999999999999999999999999999888888899999999999999998887775 89999999999


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-Hhcccc
Q 015396          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE  238 (407)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  238 (407)
                      +|++.+++.+....+|..++|.+++.+.+                ..+|+..+.+.++..++..+. .+..||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQ----------------FLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------------ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999987                344555556666655554443 333444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.58  E-value=6.6e-14  Score=131.63  Aligned_cols=139  Identities=21%  Similarity=0.279  Sum_probs=117.2

Q ss_pred             HHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhh
Q 015396           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG  130 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~  130 (407)
                      +.............|.+.++.|.+..+      .+...+...++..++.++.|+++||+|||+.+..+.+...++.++..
T Consensus       230 ~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  303 (406)
T PRK11551        230 FFTLIVLYFLLNWLPSLLVGQGLSRSQ------AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALA  303 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            333334444555678888888999888      99999999999999999999999999999999887777777777777


Q ss_pred             ccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          131 LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       131 ~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ..++.+.+.+..++.|++.+...+. .++..|.+|+++|++++++.+....+|..++|.++|.+.+
T Consensus       304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        304 AAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             hcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence            7778887777778888876555554 8899999999999999999999999999999999999987

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.58  E-value=8.1e-14  Score=130.71  Aligned_cols=163  Identities=19%  Similarity=0.167  Sum_probs=128.6

Q ss_pred             hhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccch
Q 015396           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (407)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~  134 (407)
                      +........++.+.++.|.  ++      .++..+.+.++..++.++.|++.||+|||+.+..+..+..++.++....++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (399)
T PRK05122        230 IGFGTIATFITLYYAARGW--DG------AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS  301 (399)
T ss_pred             HHHHHHHHHHHHHHHHccc--cc------chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3344455566666666565  23      566677888888999999999999999999999988888888888888888


Q ss_pred             HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCC
Q 015396          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (407)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (407)
                      .+.+++.+++.|++.+...+. .....|.+|+++|+++.++++....+|..++|.+.|.+.+                .+
T Consensus       302 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~----------------~~  365 (399)
T PRK05122        302 PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS----------------WF  365 (399)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hc
Confidence            888888899999988776665 7778899999999999999999999999999999999988                44


Q ss_pred             CChhHHHHHHHHHHHHHHHHhccccCCC
Q 015396          214 PYFLPCLCISLFAFGVTIAAFWLPETLH  241 (407)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (407)
                      +|+..+.+.++..++.++..+.++++++
T Consensus       366 g~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        366 GYPSIFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            5555557777776666665555555433

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.57  E-value=3.6e-14  Score=131.80  Aligned_cols=139  Identities=13%  Similarity=0.016  Sum_probs=113.5

Q ss_pred             HHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhh
Q 015396           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG  130 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~  130 (407)
                      +.............+.+.+++|.++.+      .+++.+...++..++.++.|+++||+|||+.+..+.++..++.++..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~  288 (377)
T TIGR00890       215 FLNAVSGLLLIGLYKPYGQSLGLSDGF------LVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML  288 (377)
T ss_pred             HHHhHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            333333333445556677888888877      89999999999999999999999999999999999888888887776


Q ss_pred             ccchH--HHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          131 LSVNF--WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       131 ~~~~~--~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +.++.  ..+++..++.|++.+...+. ..++.|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus       289 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       289 FIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66543  33445677788877766654 8899999999999999999999999999999999999988

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.55  E-value=1.9e-13  Score=125.61  Aligned_cols=164  Identities=22%  Similarity=0.313  Sum_probs=139.2

Q ss_pred             HHHhhhhhhchhhhHHHHHHhh-cccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChH-HHHHHHHHHHHHHH
Q 015396           50 VLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP-VIIMGTASVVIFNT  127 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~-~~~~~~~~~~~~~~  127 (407)
                      .+.............|.+.++. |.++.+      .++..+...++..++.++.|++.||+|||+ .+..+.++..++.+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  257 (352)
T cd06174         184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAE------AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLL  257 (352)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            4444455566667777666654 888888      999999999999999999999999999999 99999999999999


Q ss_pred             HhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccc
Q 015396          128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS  206 (407)
Q Consensus       128 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw  206 (407)
                      .....++.+.+++..++.|++.+...+. ..++.|..|+++|++.+++.+....+|..++|.+.+.+.+           
T Consensus       258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~-----------  326 (352)
T cd06174         258 LLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD-----------  326 (352)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence            9999899999999999999998887775 9999999999999999999999999999999999999998           


Q ss_pred             cccccCCCChhHHHHHHHHHHHHHHHHhc
Q 015396          207 ESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (407)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (407)
                           ..+|+..+.+.++..++..+...+
T Consensus       327 -----~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         327 -----TGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             -----ccCcchHHHHHHHHHHHHHHHhee
Confidence                 445555557777777666555443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.55  E-value=1.8e-12  Score=116.05  Aligned_cols=268  Identities=18%  Similarity=0.107  Sum_probs=174.8

Q ss_pred             HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccC-----ChHHHHH-HHHHHHHHHHHhhc-----cc-
Q 015396           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-----RKPVIIM-GTASVVIFNTLFGL-----SV-  133 (407)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G-----rr~~~~~-~~~~~~~~~~~~~~-----~~-  133 (407)
                      .+..|++++..-      .+...+...+.. ...+.+|+.||+.+     ||..+++ +..+...+..+..+     +. 
T Consensus         5 VMIvEL~vpA~l------v~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~   77 (403)
T PF03209_consen    5 VMIVELGVPAWL------VALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAES   77 (403)
T ss_pred             hHHHHhccHHHH------HHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence            355678887777      888888877764 57999999999998     7766655 45555544443332     22 


Q ss_pred             ------hH--H--HHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 015396          134 ------NF--W--MAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (407)
Q Consensus       134 ------~~--~--~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  202 (407)
                            +.  +  ...+...+.|++.+...+. .++++|..|+|+|+++.++...+..+|.+++..+.+.+.+.      
T Consensus        78 ~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~------  151 (403)
T PF03209_consen   78 GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP------  151 (403)
T ss_pred             ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc------
Confidence                  22  2  2334457778887777665 99999999999999999999999999999999999999872      


Q ss_pred             cccccccccCCCChhHHHHHH--HHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccc
Q 015396          203 LFSSESLFGKFPYFLPCLCIS--LFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLK  280 (407)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (407)
                       +.        .-+..-.+..  +..+...++..+-.|.+.....+.++++                +......++++..
T Consensus       152 -~s--------~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~----------------~~~f~~a~~~~~~  206 (403)
T PF03209_consen  152 -FS--------PERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERP----------------RPPFREAWRQVWA  206 (403)
T ss_pred             -cC--------HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCC----------------CccHHHHHHHHHh
Confidence             11        1111112222  2222222222333343332222111000                1112335677778


Q ss_pred             cchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHH
Q 015396          281 NWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIA  360 (407)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  360 (407)
                      +|+.++.....++.......-...+     +|+.-+-+|++..+..-+....+.+..++....+.++.+|.++++....+
T Consensus       207 ~~~a~~f~~fl~l~t~a~~~QD~iL-----EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G  281 (403)
T PF03209_consen  207 SPQARRFFVFLFLGTLAFFMQDVIL-----EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALG  281 (403)
T ss_pred             CCChhHHHHHHHHHHHHHHhhHHHc-----CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            8888777666666555444443333     33333338999999999999999999998875666666688888888899


Q ss_pred             HHHHHHHHhhhhHHHh
Q 015396          361 GVLTIPLLTSYPYIAM  376 (407)
Q Consensus       361 ~~~~~~~~~~~~~~~~  376 (407)
                      +....+++.++.....
T Consensus       282 ~~~~~~~f~lii~a~~  297 (403)
T PF03209_consen  282 CLLGALAFALIILAGP  297 (403)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9888888877655443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.54  E-value=1.8e-13  Score=127.42  Aligned_cols=148  Identities=12%  Similarity=0.064  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      ++++...+..++.......+....|.+.+++|.++.+      .|++.+...++..+..++.|++.||+|+|+.+.++.+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~------~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~  278 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASA------TGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAI  278 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHH
Confidence            3344444555555666667777888777889999988      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHH-HHHHHHHHHHHHhhhhhcC
Q 015396          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~  195 (407)
                      +..+..++.+++++.+.+++.+++.|+..+...+. ..++.+. |+++|++..++++ ...++|..++|.++|++.+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       279 ACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888875 8899988 9999999999985 5788999999999999998

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.54  E-value=6.8e-14  Score=132.10  Aligned_cols=139  Identities=18%  Similarity=0.137  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~  162 (407)
                      .|++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+. ..++.|.
T Consensus       264 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  343 (420)
T PRK09528        264 FGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLN  343 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999988888888999999999999999887776554 8899999


Q ss_pred             ccccchhhhhHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-Hhcccc
Q 015396          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE  238 (407)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  238 (407)
                      +|++.|++..+. ++....+|.+++|.+.|++.+                ..+|+..+...++..++..+. .+.+++
T Consensus       344 ~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~----------------~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        344 FDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD----------------SIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             cCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH----------------hhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999887665 677888999999999999998                334555557666665554433 333443

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.54  E-value=2.9e-13  Score=125.80  Aligned_cols=156  Identities=15%  Similarity=0.292  Sum_probs=122.4

Q ss_pred             hhhhHHH-HHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHH
Q 015396           60 LFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMA  138 (407)
Q Consensus        60 ~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l  138 (407)
                      .....|. +.+++|.++.+      .+++.+...+...++.++.|++.||+|||+++..+.++..+........++.+.+
T Consensus       218 ~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (375)
T TIGR00899       218 YIINMPLLIIHELGLPDKL------AGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWAL  291 (375)
T ss_pred             HHhhhHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444554 45778998888      8888877777778889999999999999999988877766666666667788888


Q ss_pred             HHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChh
Q 015396          139 VLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL  217 (407)
Q Consensus       139 ~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~  217 (407)
                      ++.+++.|++.+...+. ..++.|..|+ +|++++++.+....+|..++|.+++.+.+                ..+|+.
T Consensus       292 ~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~----------------~~g~~~  354 (375)
T TIGR00899       292 LMLQLLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAE----------------RWSYHA  354 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------hccchh
Confidence            88899999987776665 7888898875 56799999999999999999999999988                444555


Q ss_pred             HHHHHHHHHHHHHHHHhcccc
Q 015396          218 PCLCISLFAFGVTIAAFWLPE  238 (407)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~e  238 (407)
                      .+.+.++..++..+...+++|
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       355 VYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHHHHHheecC
Confidence            557777776666666555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.52  E-value=3.2e-13  Score=127.09  Aligned_cols=163  Identities=17%  Similarity=0.229  Sum_probs=126.7

Q ss_pred             hhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccc
Q 015396           54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV  133 (407)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~  133 (407)
                      ........+.++.+.++.+.+..+  .....+.+.++..++..++.+..|+++||+|||+.+..+..+..++.+.....+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  309 (408)
T PRK09874        232 QVATGSIAPILTLYVRELAGNVSN--IAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ  309 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc
Confidence            334445566677666654433322  112256667777888889999999999999999999999888888887777778


Q ss_pred             hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccC
Q 015396          134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGK  212 (407)
Q Consensus       134 ~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~  212 (407)
                      +.+.+++.+++.|++.+...+. .+++.+..|+++|++.+++.+....+|..+||.++|.+.+                .
T Consensus       310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~----------------~  373 (408)
T PRK09874        310 TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISA----------------N  373 (408)
T ss_pred             cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHh----------------h
Confidence            8888999999999998887775 8888899999999999999999999999999999999988                4


Q ss_pred             CCChhHHHHHHHHHHHHHHHHh
Q 015396          213 FPYFLPCLCISLFAFGVTIAAF  234 (407)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~  234 (407)
                      ++|+..+.+.++..++..+..+
T Consensus       374 ~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        374 YGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             cchhHHHHHHHHHHHHHHHHHH
Confidence            4455555777777666555443

>PRK12382 putative transporter; Provisional

Probab=99.51  E-value=5.8e-13  Score=124.61  Aligned_cols=156  Identities=21%  Similarity=0.212  Sum_probs=124.4

Q ss_pred             hhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccch
Q 015396           55 LPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN  134 (407)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~  134 (407)
                      ..........|.+.++.+.+  +      .++..+.+.++..+++++.|++.||+|+|+.+..+..+..++.++..+.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  301 (392)
T PRK12382        230 VGFAVIGTFVSLYFASKGWA--M------AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT  301 (392)
T ss_pred             HHHhHHHHHHHHHHHhcCCc--h------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc
Confidence            34444555666666666654  3      556667788888899999999999999999999998888888888878888


Q ss_pred             HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCC
Q 015396          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF  213 (407)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~  213 (407)
                      .+.+++..++.|++.+...+. .+.+.|.+|+++|+++.++.+....+|..++|.+.+++.+                ..
T Consensus       302 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~----------------~~  365 (392)
T PRK12382        302 AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT----------------SF  365 (392)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------Hh
Confidence            888888999999988876665 7888999999999999999999999999999999999998                34


Q ss_pred             CChhHHHHHHHHHHHHHHHHh
Q 015396          214 PYFLPCLCISLFAFGVTIAAF  234 (407)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~  234 (407)
                      +|+..+.+.++..++..+..+
T Consensus       366 g~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        366 GYPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             CchHHHHHHHHHHHHHHHHHH
Confidence            455555777666666554433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.51  E-value=1.5e-12  Score=121.80  Aligned_cols=178  Identities=12%  Similarity=0.082  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (407)
                      .+.+.+..++............|.+.+++|.+..+      .|...+.+.++..++.+..|++.||+|||+.+..+..+.
T Consensus       207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~  280 (393)
T PRK09705        207 AWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQY------SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQ  280 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            33344444444555556667788777788999888      999999999999999999999999999999998888777


Q ss_pred             HHHHHHhhc-cchHHHHHHHHHHHhhhccchhHH-HHHHhhhcc-ccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 015396          123 VIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (407)
Q Consensus       123 ~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (407)
                      .++.++... .++...+.  -++.|++.+...+. .....+..+ +++|++.+++.+....++..++|.+.|++.+..+ 
T Consensus       281 ~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g-  357 (393)
T PRK09705        281 LVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG-  357 (393)
T ss_pred             HHHHHHHHHccchHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence            777665443 33322222  24567776666564 556667664 6789999999999999999999999999998321 


Q ss_pred             CCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCC
Q 015396          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRH  243 (407)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~  243 (407)
                                    +|...+.+.++..+...+. ..+.||+++++
T Consensus       358 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        358 --------------NYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             --------------CchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence                          1444445555555444333 45667766544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.51  E-value=4.1e-13  Score=126.69  Aligned_cols=161  Identities=17%  Similarity=0.127  Sum_probs=129.4

Q ss_pred             chhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHH
Q 015396           59 SLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM  137 (407)
Q Consensus        59 ~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~  137 (407)
                      ......|.+.++ +|.+..+      .|++.+...++..++.++.+++.||.++++.+..+.++..++.++..+.++.+.
T Consensus       241 ~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  314 (417)
T PRK10489        241 AVRVLYPALADEVWQMGAAQ------IGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWIL  314 (417)
T ss_pred             hHHHhhHHHHHhccCCChhH------hHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHH
Confidence            345566767666 8998888      999999999999999999999999988888888888888888888888888888


Q ss_pred             HHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCCh
Q 015396          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYF  216 (407)
Q Consensus       138 l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~  216 (407)
                      +.+..++.|++.+...+. .+++.|..|++.|+++++++.....+|..+||.+.|.+.+                ..+.+
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~----------------~~g~~  378 (417)
T PRK10489        315 AVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA----------------MMTPV  378 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH----------------Hhchh
Confidence            888888999988777665 7899999999999999999999999999999999999998                33444


Q ss_pred             hHHHHHHHHHHH-HHHHHhccccCCC
Q 015396          217 LPCLCISLFAFG-VTIAAFWLPETLH  241 (407)
Q Consensus       217 ~~~~~~~~~~~~-~~~~~~~~~e~~~  241 (407)
                      ..+...++..++ ..+....+|+.++
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (417)
T PRK10489        379 ASASASGFGLLIIGVLLLLVLGELRR  404 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccc
Confidence            444555544333 4444555666554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.51  E-value=1.4e-13  Score=131.09  Aligned_cols=147  Identities=17%  Similarity=0.151  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc--CChHHHHH--H
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM--G  118 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~~~~--~  118 (407)
                      ++......++...........+|.+.+++|.+..+      .+++.++..++..+++++.|+++||.  ++|+...+  +
T Consensus       243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  316 (455)
T TIGR00892       243 FLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYE------AAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFA  316 (455)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHH
Confidence            33344444555555556666778788888998888      99999999999999999999999984  34443333  3


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      .++.+++.++....++++.+++.+++.|++.+...+. .+++.|.+|++++++.+++++....+|..+||.++|.+.+
T Consensus       317 ~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       317 LLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            3444455556667788999999999999998887775 8999999999999999999999999999999999999988

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.50  E-value=6.5e-12  Score=114.79  Aligned_cols=175  Identities=17%  Similarity=0.215  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHH-HHHHhhc----ccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc-CChHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQ----IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV  114 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~  114 (407)
                      |.++.++...+-.-+.++.....+- ++..+++    .++++      +.-+.++|..--=+..+++|+++||+ |+|++
T Consensus        21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~------A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETH------ATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHh------hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            5677788888888888776666664 5556666    88777      55555555544456788999999995 99999


Q ss_pred             HHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc--chhhhhHHHHHHHHHHHHHHHHh
Q 015396          115 IIMGTASVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQALGLSTVSTAWGIGLIIGPAL  189 (407)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~  189 (407)
                      +.++.++..++.++.+.+.  +...++++..+.++|.|..-+. .+++.|.+|++  +|-..++++.++.++|+.++|++
T Consensus        95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i  174 (498)
T COG3104          95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPII  174 (498)
T ss_pred             HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHH
Confidence            9999999999999999884  7888999999999999999885 99999999854  36678888999999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccc
Q 015396          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (407)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (407)
                      .+++.+                +.+|+..|...++--.+.++.....+
T Consensus       175 ~~~~~~----------------~~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         175 TGLLAI----------------NYGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             HHHHHH----------------hhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999998                55666666776666555555554444

>TIGR00897 2A0118 polyol permease family

Probab=99.50  E-value=6.9e-13  Score=124.46  Aligned_cols=170  Identities=15%  Similarity=0.237  Sum_probs=123.6

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHH-HHHHHH
Q 015396           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-MGTASV  122 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~-~~~~~~  122 (407)
                      +...+..++............|.+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+. .+.+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~  298 (402)
T TIGR00897       225 LLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSE------WLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGC  298 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence            3333444444555555667788888889999888      888888999999999999999999999988764 333333


Q ss_pred             HHHHHHhh-----ccchHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          123 VIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       123 ~~~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      .++.+...     ..++.+.+++..++.|++.+...+....+.|.. +++|++++|+.+....+|..++|.+++.+.+  
T Consensus       299 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~--  375 (402)
T TIGR00897       299 GIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIG--  375 (402)
T ss_pred             HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            33332222     234677777788888887666655555667764 4689999999999999999999999999998  


Q ss_pred             CCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhcc
Q 015396          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (407)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (407)
                                    .+++...+++.++..++..+...++
T Consensus       376 --------------~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       376 --------------FFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             --------------hcchHHHHHHHHHHHHHHHHHHHHh
Confidence                          4455555577776666655554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.49  E-value=1.1e-12  Score=122.30  Aligned_cols=155  Identities=19%  Similarity=0.267  Sum_probs=117.7

Q ss_pred             hhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchH
Q 015396           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF  135 (407)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~  135 (407)
                      .......++|.+.++.|.++.+      .++..+...++..+++++.|++.||+|+|+++..+.....++.+...  . .
T Consensus       215 ~~~~~~~~lp~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~  285 (381)
T PRK03633        215 VLGSLYGLMPLYLNHQGMSDAS------IGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-Q  285 (381)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-h
Confidence            3344455678788888888887      89999999999999999999999999999999888877777665443  2 2


Q ss_pred             HHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCC
Q 015396          136 WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (407)
Q Consensus       136 ~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (407)
                      .......++.|++.....|. .+.+.|..|+++++...+..+...++|..+||.++|++.+                .++
T Consensus       286 ~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~----------------~~g  349 (381)
T PRK03633        286 AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ----------------NYS  349 (381)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhC
Confidence            33445667778765555564 8888999998888888888888999999999999999998                334


Q ss_pred             ChhHHHHHHHHHHHHHHHHhc
Q 015396          215 YFLPCLCISLFAFGVTIAAFW  235 (407)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~  235 (407)
                      ++..+.+.+...++..+..++
T Consensus       350 ~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        350 DNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             ccHHHHHHHHHHHHHHHHHHh
Confidence            444556666666554444433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.48  E-value=1.2e-12  Score=122.21  Aligned_cols=148  Identities=13%  Similarity=0.093  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChH--HHH-
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKP--VII-  116 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~--~~~-  116 (407)
                      +.++......+.............|.+. +++|.+..+      .++..+...++..++.++.|+++||+|||+  ... 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  288 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILE------AGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFA  288 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence            3444555566666666667777777555 567888888      899999999999999999999999999996  111 


Q ss_pred             -----HHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhh
Q 015396          117 -----MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG  190 (407)
Q Consensus       117 -----~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  190 (407)
                           .+.++..+........++.+..+....+.+.+.+ ..+ ..+++.|.+|+++|++++++.+....+|..++|.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~  367 (399)
T TIGR00893       289 RKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVI  367 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHh
Confidence                 1111111222222223344544444445455555 455 499999999999999999999999999999999999


Q ss_pred             hhhcC
Q 015396          191 GFLAQ  195 (407)
Q Consensus       191 ~~l~~  195 (407)
                      +.+.+
T Consensus       368 g~l~~  372 (399)
T TIGR00893       368 GAIAA  372 (399)
T ss_pred             hhhcc
Confidence            99998

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.47  E-value=1.1e-12  Score=126.80  Aligned_cols=131  Identities=20%  Similarity=0.245  Sum_probs=103.9

Q ss_pred             chhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc--chH
Q 015396           59 SLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNF  135 (407)
Q Consensus        59 ~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~  135 (407)
                      .....+|.+. +++|.+..+      .+++.+...++..++.++.|+++||+|||+++..+.++..+..+.....  .+.
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHT------VANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANV  366 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHH
Confidence            3456778776 588999988      9999999999999999999999999999999888877666655443332  344


Q ss_pred             HHHHHHHHHHhh-hccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          136 WMAVLTRFLLGS-LNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       136 ~~l~~~r~l~G~-~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +.+.+..++.+. +.+......+++.|.+|+++|++++++.+....+|..+||.++|.+.+
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        367 WVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             HHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence            444455555544 334333347889999999999999999999999999999999999998

>PRK03699 putative transporter; Provisional

Probab=99.47  E-value=1.1e-12  Score=122.71  Aligned_cols=173  Identities=12%  Similarity=0.084  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      ++...+..++.......+..+.|.+. +++|.+..+      .+++.+.+.++..++.+..|+++||++||+.+.....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~  280 (394)
T PRK03699        207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLED------AGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGL  280 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------hhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Confidence            33344444444445555667788666 668999988      99999999999999999999999999999999888777


Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCC
Q 015396          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY  200 (407)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~  200 (407)
                      ..+...+....++.+.+.+..++.|++.+...+. .++..|..| +++++..+.......+|..++|.+.|++.+     
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~-----  354 (394)
T PRK03699        281 ALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVA-----  354 (394)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH-----
Confidence            7777666666777777777778888876665554 667777765 456778888888899999999999999998     


Q ss_pred             CCcccccccccCCCChhHHHHHHHHHHHHHHHHhcccc
Q 015396          201 PNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPE  238 (407)
Q Consensus       201 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  238 (407)
                        ..|+         +..++..++..++..+....+++
T Consensus       355 --~~g~---------~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        355 --HFGL---------QAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             --HhCc---------hhhhhhhHHHHHHHHHHHHHHHH
Confidence              3444         44445555555544444444443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.47  E-value=2.2e-12  Score=120.57  Aligned_cols=150  Identities=13%  Similarity=0.128  Sum_probs=113.3

Q ss_pred             hhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHH
Q 015396           62 PFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVL  140 (407)
Q Consensus        62 ~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~  140 (407)
                      ..++ .+.+++|.+..+      .+++.+...++..+++++.|+++||+|||+......+.......+....++.+.+++
T Consensus       226 ~~~~~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  299 (390)
T PRK03545        226 SYIEPFVQQVAGLSENF------ATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSV  299 (390)
T ss_pred             HHHHHHHHHhcCCCccH------HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            3444 445567888888      999999999999999999999999999887554433333333333445677888888


Q ss_pred             HHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHH
Q 015396          141 TRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPC  219 (407)
Q Consensus       141 ~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~  219 (407)
                      ..++.|++.+...+. ...+.|..| ++|++++++.+....+|..+||+++|.+.+                .++++..+
T Consensus       300 ~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~----------------~~g~~~~~  362 (390)
T PRK03545        300 LSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL----------------HLGLSSIG  362 (390)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------ccChhHHH
Confidence            888999987665554 677778766 688999999999999999999999999998                44555555


Q ss_pred             HHHHHHHHHHHHHHh
Q 015396          220 LCISLFAFGVTIAAF  234 (407)
Q Consensus       220 ~~~~~~~~~~~~~~~  234 (407)
                      ...+++.++..+...
T Consensus       363 ~~~~~~~~~~~~~~~  377 (390)
T PRK03545        363 YVGAALALAALVWSI  377 (390)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777666554433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.45  E-value=7.7e-13  Score=123.63  Aligned_cols=147  Identities=20%  Similarity=0.215  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      ++......+.............|.+. +++|.+..+      .+...+...++..++.++.|+++||+|||+.+.....+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~  294 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------ALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVL  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            44444455555555666667778666 678888888      89999999999999999999999999999987755544


Q ss_pred             HHHHH--HHhhc--cchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHH-HHHHHHHHHHHHHhhhhhcC
Q 015396          122 VVIFN--TLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       122 ~~~~~--~~~~~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ..+..  .....  .++.+.+++..++.|++.+...+ ..+++.|.+|+++|++++++. +....+|..++|.++|.+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       295 AALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence            43332  12222  35667777778888887766666 499999999999999999984 56677899999999999998

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.45  E-value=2e-12  Score=123.78  Aligned_cols=147  Identities=15%  Similarity=0.164  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      ++.+++..++.+........+.|.+ .+++|.+..+      .++..+...++..++.++.|+++||+|||+.+.....+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~  333 (467)
T PRK09556        260 IWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKED------AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIAL  333 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            4445555555555555567778855 4678999988      89999999999999999999999999999887665444


Q ss_pred             HHHHH--HHhhccchHHHHHHHHHHHhhhc-cchhHHHHHHhhhccccchhhhhHHHHHHHHH-HHHHHHHhhhhhcC
Q 015396          122 VVIFN--TLFGLSVNFWMAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGFLAQ  195 (407)
Q Consensus       122 ~~~~~--~~~~~~~~~~~l~~~r~l~G~~~-g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~l~~  195 (407)
                      ..++.  +.....++.+.+.+.+++.|+.. +..........|.+|+++|+++.|+.+....+ |..++|.+.|++.+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        334 ALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            43332  22233456667777888888643 33333346677999999999999999888886 77999999999998

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.44  E-value=3.5e-11  Score=107.65  Aligned_cols=304  Identities=12%  Similarity=0.018  Sum_probs=193.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH-HHHHHHHHHHHhhccch--H-HHHHHHHHHHhhhccchhHH-
Q 015396           81 GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GTASVVIFNTLFGLSVN--F-WMAVLTRFLLGSLNGLLGPI-  155 (407)
Q Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~-~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~-  155 (407)
                      ..+.|...++..+...+.+|+.|.++|+.|+||..+. ...+..++..+..++++  + +..++...+..++.....+. 
T Consensus        57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy  136 (438)
T COG2270          57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY  136 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence            3448888889999999999999999999998766554 44445555555555443  4 44555557777777666665 


Q ss_pred             HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhh--hhhcCCCCCCC-CcccccccccCCCChhHHHHHHHHHHHHHHH
Q 015396          156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALG--GFLAQPAEKYP-NLFSSESLFGKFPYFLPCLCISLFAFGVTIA  232 (407)
Q Consensus       156 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~-~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (407)
                      .+++.+..++++-++..+.-.....+|+.+.-++.  ........+.+ ..++-...- ...-|..+.+.++..++..+-
T Consensus       137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHHHhH
Confidence            99999999998888877776555566665544432  12111101000 011111111 344566667777766664444


Q ss_pred             -HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccC
Q 015396          233 -AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANS  311 (407)
Q Consensus       233 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (407)
                       ++..++.++......   +......           ++-....+++.+++.+....+..+++.-...+...+-..|...
T Consensus       216 m~~~v~~~~~~~~~~~---~~l~~g~-----------k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~  281 (438)
T COG2270         216 MILNVHDAEKISSPPP---TALRNGF-----------KELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAA  281 (438)
T ss_pred             HHhcccccccccccch---HHHHHHH-----------HHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence             444555443211110   0000000           0112245667777888888888888887777777777777765


Q ss_pred             CCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHHhhhhhhhH---hhhh-
Q 015396          312 PKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLA---FLLN-  387 (407)
Q Consensus       312 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-  387 (407)
                      .     +|++..+...+....++.++++.+ +.+++++|+|.|+++.++.++..+..+...+......++..   +... 
T Consensus       282 ~-----~gls~~~lll~g~~~~vvA~lg~i-i~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~  355 (438)
T COG2270         282 D-----LGLSSTELLLIGIALSVVAALGAI-IAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSL  355 (438)
T ss_pred             H-----cCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Confidence            4     899999999999999999999996 88999999999999888888776666654433322222211   1111 


Q ss_pred             --hhHHHHHHHhhcCCCCCC
Q 015396          388 --CASVVKNLLSSSGPGSKR  405 (407)
Q Consensus       388 --~~~~~~~~~~~~~p~~~r  405 (407)
                        .-+..++++.+++|+.+-
T Consensus       356 G~~qA~SRSy~~~lvp~~k~  375 (438)
T COG2270         356 GGAQASSRSYLARLVPKGKE  375 (438)
T ss_pred             chHHHHHHHHHHHhCCCccc
Confidence              223567888999988654

>PRK09952 shikimate transporter; Provisional

Probab=99.44  E-value=3.7e-12  Score=120.79  Aligned_cols=169  Identities=16%  Similarity=0.176  Sum_probs=115.5

Q ss_pred             HHhhhhhhchhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 015396           51 LCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~  129 (407)
                      +.............|.+ .+++|.+...      ...+.....+...++.++.|+++||+|||+.+..+.++..++.+.+
T Consensus       260 ~~~~~~~~~~~~~~~~y~~~~~g~s~~~------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~  333 (438)
T PRK09952        260 LCELLTMYIVTAFALNYSTQNLGLPREL------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPF  333 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            33344444455666654 4667877765      5555555666778888999999999999999888876665544333


Q ss_pred             hc----cchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHH-HHHHHHHHHHHHHhhhhhcCCCCCCCCc
Q 015396          130 GL----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNL  203 (407)
Q Consensus       130 ~~----~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~  203 (407)
                      ..    .++.+.+++..++.|++.+...+ ..++++|.+|++.|+.+.++. ..+..+|+.++|.+.+++.+..      
T Consensus       334 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~------  407 (438)
T PRK09952        334 FMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF------  407 (438)
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            22    22344445556666777666555 488999999999999998885 4455689999999999998721      


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHHHHhccccC
Q 015396          204 FSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (407)
Q Consensus       204 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (407)
                              ..+|..++.+.++..++..+..+.++|+
T Consensus       408 --------~~~~~~~~~~~~~~~~i~~v~~~~~~~~  435 (438)
T PRK09952        408 --------GGSWHSVAIYLLAGCLISAMTALLMKDN  435 (438)
T ss_pred             --------CCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence                    1235555566666666666665666653

>TIGR00895 2A0115 benzoate transport

Probab=99.41  E-value=3.6e-12  Score=119.32  Aligned_cols=142  Identities=20%  Similarity=0.264  Sum_probs=113.2

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~  125 (407)
                      ++...++............|.+.+++|.+..+      .++..+...++..++.++.|+++||+|||+.+....+.....
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  328 (398)
T TIGR00895       255 LWLLYFMLLVGVYFLTNWLPKLMVELGFSLSL------AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFA  328 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            33444444455555666778888899999888      899999999999999999999999999996555444444444


Q ss_pred             HHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (407)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (407)
                      .++.....+.+.+++..++.|++.+...+. .+++.|.+|+++|++++++......+|..+||.++|++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       329 VLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            333333567777788889999988777775 99999999999999999999999999999999999876

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.41  E-value=8e-12  Score=116.45  Aligned_cols=143  Identities=15%  Similarity=0.119  Sum_probs=117.1

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~  125 (407)
                      .....++............|.+.++.|.+..+      .|...+...++..+..++.|++.||+|+|+.+..+.++.+++
T Consensus       210 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~  283 (382)
T PRK11128        210 FLLCVSLLQGSHAAYYGFSAIYWQAAGYSAST------IGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVR  283 (382)
T ss_pred             HHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            33334443444444556667677788998887      899999888999999999999999999999999999998888


Q ss_pred             HHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHH-HHHHHHHHHHHHhhhhhcC
Q 015396          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~l~~  195 (407)
                      .+..+..++++.+++..++.|++.+...+. ..++.+. +++++++..+..+ ....+|..+||.++|.+.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        284 WGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888899999999999999998877775 7777776 5666788888875 6677888999999999998

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.40  E-value=7.9e-12  Score=119.94  Aligned_cols=173  Identities=17%  Similarity=0.188  Sum_probs=123.3

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~  125 (407)
                      ..+..+.............|.+.+++|.+..+      .++......++..++.++.|+++||+|||+.+..+.++..++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       289 VVLQWFQQFTGINAIMYYSPTIFENAGVSTDH------AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHhCCeehHHHHHHHHHHcCCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            33344444444555666778888899998877      888888999999999999999999999999999888877777


Q ss_pred             HHHhhc-----cc------hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396          126 NTLFGL-----SV------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (407)
Q Consensus       126 ~~~~~~-----~~------~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (407)
                      .++..+     .+      +...+....+..+.......+. ..++.|.+|+++|++++++.+....+|.+++|.+.+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~  442 (481)
T TIGR00879       363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM  442 (481)
T ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666552     11      2233333333333322223344 77889999999999999999999999999999999999


Q ss_pred             cCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCC
Q 015396          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL  240 (407)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~  240 (407)
                      .+       ..+|+..|         ++.++..++..+. .++.||++
T Consensus       443 ~~-------~~~~~~~f---------~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       443 LE-------SIGVGGVF---------IFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HH-------hcCcccee---------hhHHHHHHHHHHHHheecccCC
Confidence            87       34444444         5666665554444 44556644

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.39  E-value=1.2e-11  Score=117.14  Aligned_cols=167  Identities=13%  Similarity=0.035  Sum_probs=109.0

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc--CChHHH-HH--
Q 015396           44 FSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVI-IM--  117 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~~-~~--  117 (407)
                      +.+....+........+..++|.+. +++|.+..+      .+...+.+.++..++.++.|+++||+  ++|+.. ..  
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~  319 (434)
T PRK11663        246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVT------ANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFA  319 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHH------HHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHH
Confidence            3344444444455555666777666 678999988      89999999999999999999999999  333322 22  


Q ss_pred             -HHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchh-HHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          118 -GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       118 -~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                       +.....+...... ..+...+.+..+..|++..... .......|.+|+++|++++|+.+....+|..++|.+.+++.+
T Consensus       320 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~  398 (434)
T PRK11663        320 AGILLSVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE  398 (434)
T ss_pred             HHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence             1121221212222 2333334344444554322222 235567899999999999999999999999999999999998


Q ss_pred             CCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHH
Q 015396          196 PAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAA  233 (407)
Q Consensus       196 ~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (407)
                                      ..+|...+...++..++..+..
T Consensus       399 ----------------~~g~~~~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        399 ----------------IWHWTGFFVVISIAAGISALLL  420 (434)
T ss_pred             ----------------hcccHHHHHHHHHHHHHHHHHH
Confidence                            3344444466666665544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.38  E-value=8.4e-12  Score=118.94  Aligned_cols=170  Identities=14%  Similarity=0.064  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHH-hhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc--CChHHH-HHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVI-IMG  118 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~~-~~~  118 (407)
                      ++...+..++..........++|.+.+ +.|.+..+      .++....+.++..++.++.|+++||+  |||+.. ...
T Consensus       255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~  328 (452)
T PRK11273        255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  328 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHH
Confidence            333444444444455556678886665 47888887      88888889999999999999999999  555432 222


Q ss_pred             HHHHHHHHHHhhc--cchHHHHHHHHHHHhhhccc-hhHHHHHHhhhccccchhhhhHHHHHHHHHHHH-HHHHhhhhhc
Q 015396          119 TASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGL-LGPIKAYACEIFREEHQALGLSTVSTAWGIGLI-IGPALGGFLA  194 (407)
Q Consensus       119 ~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~  194 (407)
                      ..+..++.+...+  ..+.+..++..++.|.+... ......+..|.+|+++|++++|+.+....+|.. ++|.+.|.+.
T Consensus       329 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~  408 (452)
T PRK11273        329 MTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  408 (452)
T ss_pred             HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            2223333222222  33455454555555554222 222345678999999999999999888888765 4899999999


Q ss_pred             CCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHh
Q 015396          195 QPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (407)
Q Consensus       195 ~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (407)
                      +                +.+|+..+.+.++..++.++...
T Consensus       409 ~----------------~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        409 D----------------FFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             H----------------HhcchHHHHHHHHHHHHHHHHHH
Confidence            8                33445555666666555554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.37  E-value=7.1e-12  Score=117.67  Aligned_cols=131  Identities=18%  Similarity=0.263  Sum_probs=105.1

Q ss_pred             chhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHH-HHhhccchHH
Q 015396           59 SLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN-TLFGLSVNFW  136 (407)
Q Consensus        59 ~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~-~~~~~~~~~~  136 (407)
                      ......| .+.+++|.+..+      .+++.+...++..++.++.|+++||+|||+.+..+.++..+.. ......++.+
T Consensus       256 ~~~~~~~~~~~~~~g~s~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (405)
T TIGR00891       256 PIQDLLPTYLKADLGLSPHT------VANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVA  329 (405)
T ss_pred             hhhhhhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchH
Confidence            3444556 445678999888      9999999999999999999999999999999888877653333 2333456667


Q ss_pred             HHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          137 MAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       137 ~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      .+.+..++.|+..+...+ ...++.|.+|+++|++++|+.+....+|..++|+++|.+.+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       330 VLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            777776777765444444 58889999999999999999999999999999999999998

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.36  E-value=1.7e-11  Score=116.05  Aligned_cols=130  Identities=19%  Similarity=0.229  Sum_probs=98.8

Q ss_pred             hhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHH
Q 015396           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (407)
Q Consensus        60 ~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (407)
                      +...+|.+.++.|.++.+      .+...+...++..++.++.|++.||+|||+.+..+.++..+..+.....++.....
T Consensus       250 ~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (426)
T PRK12307        250 IFGLLPTYLAGEGFDTGV------VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLL  323 (426)
T ss_pred             HHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            455678777778888877      88888999999999999999999999999999888877766655443322211112


Q ss_pred             HHHHHHhh--hccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          140 LTRFLLGS--LNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       140 ~~r~l~G~--~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +.-++.|+  +.....+ .+.++.|.+|+++|++++|+......+|..++|.+.+++.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        324 LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            22233333  2222333 47788999999999999999999999999999999999988

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.36  E-value=4.4e-12  Score=117.28  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=114.2

Q ss_pred             hhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccch-HHHHH
Q 015396           62 PFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVN-FWMAV  139 (407)
Q Consensus        62 ~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~  139 (407)
                      ...|.+.++ +|.+..+      .+++.+...++..++.++.|++.||+|||+.+..+..+.+++.....+.++ .+.++
T Consensus       232 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
T TIGR00900       232 ALFPYVQSKYLGRGSTH------YGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL  305 (365)
T ss_pred             HHhHHHHHHHhCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            566777665 8888888      999999999999999999999999999999999888888888777777764 88888


Q ss_pred             HHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +..++.|++.+...+. .+++.|.+|+++|+++.++.+....+|..++|.++|.+.+
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999998887775 8999999999999999999999999999999999999987

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.36  E-value=4e-11  Score=113.37  Aligned_cols=178  Identities=13%  Similarity=0.179  Sum_probs=138.9

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCCh--HHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIMG  118 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr--~~~~~~  118 (407)
                      .+....++.++..-+.+.+..... +..+++|.+..+      ...+..+..+..++|++++|++.||+|.|  ++++.+
T Consensus       282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~------l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~  355 (477)
T PF11700_consen  282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQ------LIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLIS  355 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            334444454544444444444444 445689999999      88888888999999999999999999999  898888


Q ss_pred             HHHHHHHHHHhhc--------cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 015396          119 TASVVIFNTLFGL--------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (407)
Q Consensus       119 ~~~~~~~~~~~~~--------~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  189 (407)
                      ++++.+..+...+        .++.+.+.+.-++.|++.|...+. .++.+|..|+++.+..+|++....-....+||++
T Consensus       356 l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll  435 (477)
T PF11700_consen  356 LILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLL  435 (477)
T ss_pred             HHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence            8888665555444        678888999999999999998886 9999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCC
Q 015396          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETL  240 (407)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  240 (407)
                      -+.+.+.++               ..|..+....++.++.++++.+++.++
T Consensus       436 ~g~i~~~tg---------------~~r~g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  436 FGLITDATG---------------SQRYGFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHHHHHhC---------------CchhHHHHHHHHHHHHHHHHhhccchh
Confidence            999998432               234455666666666666666666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10504 putative transporter; Provisional

Probab=99.34  E-value=2.6e-11  Score=116.31  Aligned_cols=147  Identities=16%  Similarity=0.179  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHH-hhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      +.......++............|.+.+ .+|.++.+      .++......++..++.++.|++.||+|||+++..+..+
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~  336 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFH------AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLG  336 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            333444455555555555666776665 47888877      88888888888888889999999999999999988887


Q ss_pred             HHHHHHHhhcc---chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          122 VVIFNTLFGLS---VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       122 ~~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ..+...+..+.   ++.+.+.+..++.|++.+...+. ..+..+..|+++|+.+.++.++...+|..+|+.+++.+.+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        337 LALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77776655543   33444555667788877776654 8888899999999999999999999999999999999887

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.34  E-value=4.2e-11  Score=114.44  Aligned_cols=137  Identities=18%  Similarity=0.252  Sum_probs=121.6

Q ss_pred             hhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhc
Q 015396           53 TALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL  131 (407)
Q Consensus        53 ~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~  131 (407)
                      ..+....+...+|.+. +++|.+...      .|++.+++.+|.+++++..+++.+|+++++.+..+.++.+++.+..++
T Consensus       230 ~~l~~~a~~aLlPl~a~~~l~~~a~~------yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal  303 (524)
T PF05977_consen  230 FNLFASAVWALLPLFARDVLGGGASG------YGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL  303 (524)
T ss_pred             HHHhhhHHHHhhhHHHHHHhCCcHHH------HHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc
Confidence            3344444556678665 568888888      999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          132 SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       132 ~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +++.+..++..++.|++....... .+.+.+..|++.|||+++++.+....+..+|.++.|.+.+
T Consensus       304 ~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  304 SPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987776664 8899999999999999999999999999999999999998

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.33  E-value=3.2e-11  Score=116.49  Aligned_cols=181  Identities=14%  Similarity=0.069  Sum_probs=110.2

Q ss_pred             hhhchhhhHHHHHHhhcccccccchh----hH-HHH-HHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 015396           56 PISSLFPFLYFMIKDFQIAKREEDIG----SY-AGY-VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (407)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~----~~-~g~-~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~  129 (407)
                      ..+......|.+.++.|.+..+....    .+ ... ...+..++..++.++.++++||+|||++++.+.++.+++..+.
T Consensus       303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l  382 (502)
T TIGR00887       303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL  382 (502)
T ss_pred             HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence            33344455777778888875431100    00 011 2334455666788999999999999999988887777666555


Q ss_pred             hccc----hHHHHHHHHHHHhhh-ccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 015396          130 GLSV----NFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (407)
Q Consensus       130 ~~~~----~~~~l~~~r~l~G~~-~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  204 (407)
                      ++..    +...+...-+...++ .+.......+.+|.+|++.|+++.++.+....+|.+++|.+.+++.+..+...   
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~---  459 (502)
T TIGR00887       383 GFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTK---  459 (502)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccc---
Confidence            4422    111111111122222 22233347778999999999999999999999999999999999987321000   


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCC
Q 015396          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (407)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (407)
                      |+..   ..++...+.+.++..++..+..+++||++.+
T Consensus       460 ~~~~---~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~  494 (502)
T TIGR00887       460 GYPT---GIWMGHVLEIFALFMFLGILFTLLIPETKGK  494 (502)
T ss_pred             cccc---cccchHHHHHHHHHHHHHHHHheEeccCCCC
Confidence            0000   1223344466666655555555677987653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.33  E-value=7.7e-11  Score=106.44  Aligned_cols=171  Identities=15%  Similarity=0.155  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhH-HHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      +.++......++...+......++ |.+.+..|.+.+.      ++++.-++.++..+++.+.|+++|| +.|+.+....
T Consensus       211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~------vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~  283 (394)
T COG2814         211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSA------VSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAAL  283 (394)
T ss_pred             chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhH------HHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHH
Confidence            344445555555555555555555 5666778899988      9999999999999999999999999 8898888887


Q ss_pred             HHHHHHHHHhhc-cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          120 ASVVIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       120 ~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      .+..+..+...+ .++.+..++.-++.|++.+..... ..-+++ .-++.+..+.+++....++|..+|..++|.+.+  
T Consensus       284 ~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~--  360 (394)
T COG2814         284 LLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLD--  360 (394)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            777666655554 556666667777777766554443 555566 446899999999999999999999999999999  


Q ss_pred             CCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhc
Q 015396          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (407)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (407)
                                    ++++....++.++..++.++..+.
T Consensus       361 --------------~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         361 --------------ALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             --------------hhchHHHHHHHHHHHHHHHHHHHH
Confidence                          555666667887777776655443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.32  E-value=1.4e-11  Score=118.04  Aligned_cols=154  Identities=10%  Similarity=0.056  Sum_probs=100.2

Q ss_pred             hhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCCh-------HHHHHHHHHHHHHHHHhhc
Q 015396           60 LFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRK-------PVIIMGTASVVIFNTLFGL  131 (407)
Q Consensus        60 ~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr-------~~~~~~~~~~~~~~~~~~~  131 (407)
                      ....+|.+ .+++|.+..+      .+.+.+++.++..++.++.|+++||+|||       .......++.++..++...
T Consensus       271 ~~~~~p~~l~~~~g~s~~~------a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~  344 (476)
T PLN00028        271 MDNIIAEYFYDRFGLSLET------AGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR  344 (476)
T ss_pred             HHhHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence            34455644 5678999888      99999999999999999999999999865       2333334444444445555


Q ss_pred             cchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccc
Q 015396          132 SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLF  210 (407)
Q Consensus       132 ~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~  210 (407)
                      .++.+..++..++.+++.+.... ..+++.+.. +++|+...|+.+.+..+|..++|.+.+ ..+               
T Consensus       345 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~---------------  407 (476)
T PLN00028        345 ANSLGAAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF-TGS---------------  407 (476)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH-hcC---------------
Confidence            66666555555666665444333 355666654 478999999987766677766665543 111               


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHhccc
Q 015396          211 GKFPYFLPCLCISLFAFGVTIAAFWLP  237 (407)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (407)
                       ..+|...+++.++..++..+..++++
T Consensus       408 -~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        408 -SYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             -CccHhhHHHHHHHHHHHHHHHHHhee
Confidence             22355555777766666666655554

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.31  E-value=4.9e-10  Score=107.64  Aligned_cols=153  Identities=12%  Similarity=0.141  Sum_probs=114.0

Q ss_pred             HHHHHhhcccccccchhhHHHHHHH-HHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHh---hcc-chHHHHH
Q 015396           65 YFMIKDFQIAKREEDIGSYAGYVGS-SFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (407)
Q Consensus        65 ~~~~~~~~~s~~~~~~~~~~g~~~~-~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~  139 (407)
                      |.+.+++|.+.++      .++... ...++..++.++.|+++||+|+|+.+..+.++.++..+.+   +.. ++.+.+.
T Consensus       247 ~~l~~~~G~s~~~------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~  320 (491)
T PRK11010        247 TFLIRGVGFDAGE------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMG  320 (491)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            3445678999998      999874 5568999999999999999999998776665555443322   232 4555555


Q ss_pred             HHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhH
Q 015396          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLP  218 (407)
Q Consensus       140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~  218 (407)
                      +.-++..+..|...+. .++..+..+++.+++..++.+...++|..+++.++|++.+                .++|...
T Consensus       321 ~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~----------------~~G~~~~  384 (491)
T PRK11010        321 AAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE----------------AHGWPTF  384 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HhChHHH
Confidence            5566666655554453 8888999999999999999999999999999999999998                4445555


Q ss_pred             HHHHHHHHHHHHHHHhccccC
Q 015396          219 CLCISLFAFGVTIAAFWLPET  239 (407)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~e~  239 (407)
                      +.+.++.+++.++....++++
T Consensus       385 f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        385 YLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            577777777766666555554

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.31  E-value=1e-10  Score=108.84  Aligned_cols=172  Identities=17%  Similarity=0.175  Sum_probs=123.5

Q ss_pred             HHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHH
Q 015396           49 IVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL  128 (407)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~  128 (407)
                      .......+.+....+..++.++-|++..+      +-+.+....+...+..+++..+.||+|||+.++.+..+..+..++
T Consensus       278 ~~~qq~sGi~ai~~Yst~i~~~aG~~~~~------a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~  351 (485)
T KOG0569|consen  278 SFAQQFSGINAIFFYSTSIFKTAGFTPEE------AQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLL  351 (485)
T ss_pred             HHHHHhcCcceeHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            33334446666777777899999999998      889999999999999999999999999999999999999888877


Q ss_pred             hhccc---h-H--H---HHHHHHHHHhhh--ccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          129 FGLSV---N-F--W---MAVLTRFLLGSL--NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       129 ~~~~~---~-~--~---~l~~~r~l~G~~--~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      +....   + .  |   ..+++.++..++  .|.....+-+.+|.+|++.|+.++++......+...+-...-..+.+  
T Consensus       352 ~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~--  429 (485)
T KOG0569|consen  352 MSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQN--  429 (485)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            66531   1 1  1   123444444443  33333348899999999999999999988888888777666666655  


Q ss_pred             CCCCCcccccccccCCCChhHHHHHHHHHHH-HHHHHhccccCCCCC
Q 015396          198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFG-VTIAAFWLPETLHRH  243 (407)
Q Consensus       198 ~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~  243 (407)
                           .+         |- ..++...+..++ .+..++.+||++.+.
T Consensus       430 -----~~---------g~-~~filF~i~~~~~~i~~~~~lPETkgr~  461 (485)
T KOG0569|consen  430 -----VI---------GP-YVFILFVIPLAIFLIYLYRYLPETKGRT  461 (485)
T ss_pred             -----Hh---------cc-hhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence                 22         21 112444444444 455677899998654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.30  E-value=3.9e-11  Score=112.42  Aligned_cols=131  Identities=16%  Similarity=0.097  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhH-HHHHHhhh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~  162 (407)
                      .|...++..+...++.+..|++.||+|||+.+.++.++.++...+...+++.+.+++.+++.|++...... ...+..+.
T Consensus       256 ~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  335 (396)
T TIGR00882       256 FGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQ  335 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            78888888888899999999999999999999999988888888878888999999999999988655544 36677888


Q ss_pred             ccccchhhhhHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHH
Q 015396          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT  230 (407)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  230 (407)
                      .+++.++...+. .+....+|..++|.++|++.+                ..+|+.++.+.++..++..
T Consensus       336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~----------------~~G~~~~f~~~~~~~~i~~  388 (396)
T TIGR00882       336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYD----------------SIGFQGAYLVLGCIVLLFT  388 (396)
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHH----------------hcccHHHHHHHHHHHHHHH
Confidence            888888887766 578899999999999999998                4455555577666655543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.29  E-value=5.3e-11  Score=111.27  Aligned_cols=159  Identities=15%  Similarity=0.127  Sum_probs=111.8

Q ss_pred             HHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHH-HHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 015396           51 LCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (407)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~-~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~  129 (407)
                      ++............+.+.+|.|.++++      .|++..... ....++.++.|++.||+|+|+.+..+.++.++..+..
T Consensus       218 ~l~~~~~~~~~~~~~~~l~~~G~s~~~------ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~  291 (390)
T TIGR02718       218 LLSAMTAVSGFGLSKLYLVDAGWPLEW------IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLW  291 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            333344444455667777788999998      999888775 4666778999999999999999888776653332222


Q ss_pred             hc------cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccc-cchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 015396          130 GL------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (407)
Q Consensus       130 ~~------~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  201 (407)
                      ..      .++.+.+.....+.+++.+...+. .+...+..++ +++++.+++.+...++|..+||.++|.+.+      
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~------  365 (390)
T TIGR02718       292 FAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD------  365 (390)
T ss_pred             HHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            11      233444445555666666666554 7777777765 889999999999999999999999999998      


Q ss_pred             CcccccccccCCCChhHHHHHHHHHHHHHH
Q 015396          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTI  231 (407)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  231 (407)
                                ..++...+...++..++..+
T Consensus       366 ----------~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       366 ----------RFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             ----------HHccHHHHHHHHHHHHHHHH
Confidence                      34455555666665555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.28  E-value=1.4e-10  Score=109.92  Aligned_cols=138  Identities=19%  Similarity=0.166  Sum_probs=100.1

Q ss_pred             HhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHH-Hh
Q 015396           52 CTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT-LF  129 (407)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~-~~  129 (407)
                      ...........+.|.+.++ +|.+..+      .++....+.++..++.++.|+++||+|||+++..+.++..+..+ ..
T Consensus       249 ~~~~~~~~~~~~~p~~l~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        249 MTTVSFYLITVYTPTFGKTVLHLSAAD------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            3444555666778877654 7998887      88888888899999999999999999999998776544432221 11


Q ss_pred             ---hccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHH-HHHHHHHHHHHHHhhhhhcC
Q 015396          130 ---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       130 ---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~  195 (407)
                         ...++...+.+..++.|++.+...+. ..++.|.+|+++|++++++. +.+..+++.++|.+.+++.+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        323 SWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence               12234444444455666666665554 77899999999999999986 44445567889999999998

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.28  E-value=1e-10  Score=110.04  Aligned_cols=129  Identities=12%  Similarity=0.011  Sum_probs=101.8

Q ss_pred             hhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc-----c
Q 015396           60 LFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----V  133 (407)
Q Consensus        60 ~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~  133 (407)
                      .....|.+ .+++|.++.+      .++......++..++.++.|+++||+|+|+.+..+.++..++.++....     +
T Consensus       234 ~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  307 (406)
T PRK15402        234 WIALSPVILISGEQLSSYE------YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSH  307 (406)
T ss_pred             HHHHhHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            33445544 5678888887      8888888888889999999999999999999988888777766655442     3


Q ss_pred             hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       134 ~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +.+.+++..++.|++.+...+. ..... ..++++|++..+..+....+|..+|+.+++.+.+
T Consensus       308 ~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        308 AYLWLTAGLSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            5667778888899988776554 44443 3345899999999999999999999999999987

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.27  E-value=1.9e-11  Score=116.06  Aligned_cols=145  Identities=14%  Similarity=0.170  Sum_probs=108.8

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHH
Q 015396           44 FSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (407)
                      .......++............+.+.++ ++ +..+      .+++.+...++..++.+++++++||+|+|+++..+.++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~  297 (437)
T TIGR00792       225 LILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPEL------FSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLM  297 (437)
T ss_pred             HHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            333444444444444433344444432 23 3334      677778888999999999999999999999999998888


Q ss_pred             HHHHHHhhcc-chHHHHHHHHHHHhhhccchhHH-HHHHhhhcc-------ccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396          123 VIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (407)
Q Consensus       123 ~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (407)
                      +++.+...+. ++.+.+++..++.|++.+...+. .++++|..|       ++++|...++.+....+|..+++.+.+.+
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       298 VLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877766654 45677777788889988877665 888888865       55679999999999999999999999999


Q ss_pred             cC
Q 015396          194 AQ  195 (407)
Q Consensus       194 ~~  195 (407)
                      .+
T Consensus       378 l~  379 (437)
T TIGR00792       378 LG  379 (437)
T ss_pred             HH
Confidence            87

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00898 2A0119 cation transport protein

Probab=99.27  E-value=4.8e-11  Score=115.59  Aligned_cols=136  Identities=21%  Similarity=0.131  Sum_probs=103.9

Q ss_pred             HHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchH--HHHHHHHHHHhhhccchhH-HHHHHhhhccc
Q 015396           89 SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNF--WMAVLTRFLLGSLNGLLGP-IKAYACEIFRE  165 (407)
Q Consensus        89 ~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~  165 (407)
                      ....+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +..++..++.+++.+...+ .+.+..|.+|+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~  441 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPT  441 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence            34456677888999999999999999999999888888777765543  4445555566666555555 48899999999


Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCC
Q 015396          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (407)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (407)
                      +.|++++|+.+....+|.+++|.+.+ +.+                 .++..++.+.++..++..+..+++||+...
T Consensus       442 ~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~lpet~~~  500 (505)
T TIGR00898       442 VVRNLGVGVCSTMARVGSIISPFLVY-LGE-----------------KWLFLPLVLFGGLALLAGILTLFLPETKGV  500 (505)
T ss_pred             HHHhhhHhHHHHHHHHHHHHHhHHHH-HHH-----------------HHHhhHHHHHHHHHHHHHHHHHcCcCCCCC
Confidence            99999999999999999999999998 432                 234455566676666666666788887653

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.26  E-value=2.3e-10  Score=110.09  Aligned_cols=170  Identities=16%  Similarity=0.129  Sum_probs=114.5

Q ss_pred             hhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccc--
Q 015396           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV--  133 (407)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--  133 (407)
                      +.+......|.+.++.|.+..+      .++......++..++.++.|+++||+|||++++.+.++.+++.++++...  
T Consensus       286 ~~~~~~~~~p~i~~~~g~~~~~------~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~  359 (479)
T PRK10077        286 GINVVLYYAPEIFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT  359 (479)
T ss_pred             ChhHHHHHHHHHHHHcCCCCch------HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc
Confidence            3344455668888888988776      67777778888899999999999999999999999998888877665321  


Q ss_pred             h-HH-HHHHHHHHHhhhccc-hhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccccccc
Q 015396          134 N-FW-MAVLTRFLLGSLNGL-LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESL  209 (407)
Q Consensus       134 ~-~~-~l~~~r~l~G~~~g~-~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~  209 (407)
                      + .+ ....+.++.+++.+. ..+. ..++.|.+|+++|++++++......+|..+++.+.+.+.+..        |  .
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~--------~--~  429 (479)
T PRK10077        360 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNS--------W--L  429 (479)
T ss_pred             CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--------c--h
Confidence            1 11 222233344443332 3354 899999999999999999999999999998877766554200        0  0


Q ss_pred             ccCCCChhHHHHHHHHHHHHHHH-HhccccCCC
Q 015396          210 FGKFPYFLPCLCISLFAFGVTIA-AFWLPETLH  241 (407)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~  241 (407)
                      ...++++..+++.++..++..+. .++.||+++
T Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        430 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  462 (479)
T ss_pred             hhhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence            00233444446666555544443 445666543

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.26  E-value=1.2e-10  Score=110.49  Aligned_cols=171  Identities=11%  Similarity=0.038  Sum_probs=106.4

Q ss_pred             HHHHHhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHH---H
Q 015396           48 IIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV---V  123 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~---~  123 (407)
                      ...++............|.+.++ .|.++.+      .++....+.++..++.++.|+++||+++++....+....   .
T Consensus       258 ~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~  331 (438)
T TIGR00712       258 IANVFVYLLRYGVLDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVT  331 (438)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHccCCChhh------HHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHH
Confidence            33344444444556677866654 6888888      899999999999999999999999997543222222221   1


Q ss_pred             HHHHHhhc--cchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHH-HHHHHHhhhhhcCCCCC
Q 015396          124 IFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIG-LIIGPALGGFLAQPAEK  199 (407)
Q Consensus       124 ~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~  199 (407)
                      ++.+....  ..+.+......++.|++...... ......|.+|+++|++++|+.+....+| .+++|.+.|.+.+    
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~----  407 (438)
T TIGR00712       332 IAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD----  407 (438)
T ss_pred             HHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH----
Confidence            22222112  23444444444555554222222 2456779999999999999998877776 5789999999998    


Q ss_pred             CCCcccccccccCCCChhHHHHHHHHHHHH-HHHHhccccCC
Q 015396          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETL  240 (407)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~  240 (407)
                         ..|         |...+.+..+..++. +...+.+||.+
T Consensus       408 ---~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       408 ---FFG---------WDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             ---hcc---------chHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence               333         344445555444443 33455566653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.26  E-value=3e-10  Score=107.67  Aligned_cols=135  Identities=12%  Similarity=0.073  Sum_probs=89.1

Q ss_pred             hhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHh---
Q 015396           54 ALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---  129 (407)
Q Consensus        54 ~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---  129 (407)
                      .........++|.+. +++|.+..+      .+...++..++..+++++.|+++||+|||+.+..+.++..+..+..   
T Consensus       256 ~~~~~~~~~~lp~~l~~~~g~s~~~------~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~  329 (432)
T PRK10406        256 SLCFYTFTTYMQKYLVNTAGMHANV------ASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSA  329 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            344455666778655 567888877      8888888888888999999999999999998877655443333211   


Q ss_pred             -hccchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHH-HHHHHHHHhhhhhc
Q 015396          130 -GLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALGGFLA  194 (407)
Q Consensus       130 -~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~~~l~  194 (407)
                       ...++.+..+..-.+.++..+...+ ...+.+|++|++.|++++|+.+...+ +.+...|.+.+.+.
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~  397 (432)
T PRK10406        330 LQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK  397 (432)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH
Confidence             1122333222222222233333333 47789999999999999999865544 33445788887553

>TIGR00896 CynX cyanate transporter

Probab=99.26  E-value=1.8e-10  Score=106.26  Aligned_cols=143  Identities=13%  Similarity=0.042  Sum_probs=108.7

Q ss_pred             HHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc-CChHHHHHHHHHHHHHH
Q 015396           48 IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVIFN  126 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~~~  126 (407)
                      +..++...........+|.+.++.|.+..+      .+...+...++..+++++.|++.||+ +||+.+..+.++.+++.
T Consensus       204 ~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~------~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  277 (355)
T TIGR00896       204 VFFGLQSGLYYSLIGWLPAILISHGASAAT------AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL  277 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            333344444555566788888888998888      99999999999999999999999999 56677777777777777


Q ss_pred             HHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhcc-ccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       127 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      +...+..+.+... ..++.|++.+...+. .+.+.+..+ +++++...++.+....+|..++|.+.|++.+..
T Consensus       278 ~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       278 CGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             HHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666654433222 346778888887765 666665554 567788899988888999999999999999843

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.25  E-value=4.3e-11  Score=111.19  Aligned_cols=145  Identities=16%  Similarity=0.142  Sum_probs=102.4

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccC-ChHHHH-HHH-H
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG-RKPVII-MGT-A  120 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G-rr~~~~-~~~-~  120 (407)
                      .+.+..+.............|.+. +++|.++.+      .++..+...++..++.++.|+++||.+ ||+... ... .
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~  293 (379)
T TIGR00881       220 YISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------ASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMA  293 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            344445555555555666677554 567988888      899999999999999999999999864 333222 222 2


Q ss_pred             HHHHHHHHhhc--cchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          121 SVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       121 ~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ...++......  ..+.+...+..++.|+......+ ...+..|.+|+++|+++.++.+....+|..++|.+.|.+.+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       294 LIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            22222222222  34555566666777765434333 47788999999999999999999999999999999999998

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.24  E-value=4.7e-10  Score=104.89  Aligned_cols=125  Identities=11%  Similarity=0.004  Sum_probs=99.1

Q ss_pred             HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Q 015396           64 LYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF  143 (407)
Q Consensus        64 ~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  143 (407)
                      .|.+.+++|.+.++      .+++...+.++..++.++.|++.||.+++..+....+......++....++.+.+.+..+
T Consensus       240 ~p~~~~~~g~s~~~------~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  313 (394)
T PRK10213        240 RPVYMNLAGFGVDG------LTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAI  313 (394)
T ss_pred             HHHHHHhcCCChhH------HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            36777888999888      899999999999999999999999965444344333334444455455677888888889


Q ss_pred             HHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          144 LLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       144 l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +.|++.+...+. .+++.+..| +++++..+......++|..+||.++|.+.+
T Consensus       314 l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~  365 (394)
T PRK10213        314 IWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALD  365 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999988887775 778888887 556778888888889999999999999998

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.24  E-value=7.7e-11  Score=105.40  Aligned_cols=169  Identities=14%  Similarity=0.152  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc--CChHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM  117 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~~~~  117 (407)
                      +.++.++++.++.+..+..+.-+.| ++.|+.|.|..+      +++..+.+-.+.+.|.+++|+++||+  |||....+
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~------a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~  325 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVK------ANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL  325 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH
Confidence            4456788899999999999999999 556778999998      99999999999999999999999996  66655443


Q ss_pred             -HHHHHHHHHHHhhccc--hHHHHHHHHHHHhhh-ccchhHHHHHHhhhccccchhhhhHHHHHHHHH-HHHHHHHhhhh
Q 015396          118 -GTASVVIFNTLFGLSV--NFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF  192 (407)
Q Consensus       118 -~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~-~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~  192 (407)
                       ..++..++.+..-.++  |++...++.++.|+. .|....+-....|..|++--|++.|+...+..+ |.+.+....++
T Consensus       326 i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~  405 (448)
T COG2271         326 IFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGY  405 (448)
T ss_pred             HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCccee
Confidence             4444444444444444  568888888888986 444444467788999999999999999888777 88899888899


Q ss_pred             hcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHH
Q 015396          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTI  231 (407)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  231 (407)
                      +.+       .+||...|         ++..+.++++.+
T Consensus       406 i~d-------~~gW~g~F---------i~~~~~a~l~~l  428 (448)
T COG2271         406 IAD-------TWGWDGGF---------IVLSIAALLAIL  428 (448)
T ss_pred             eEe-------cCCCcchH---------HHHHHHHHHHHH
Confidence            988       45565554         555555544433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.23  E-value=1.1e-10  Score=111.14  Aligned_cols=174  Identities=15%  Similarity=0.225  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccC--ChHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTA  120 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G--rr~~~~~~~~  120 (407)
                      ++.+.+...+..++.......+|.+.++.+.+..+      .+.+.++..+...++.+..|+++|+..  ++.+..++.+
T Consensus       300 fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~------aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll  373 (509)
T KOG2504|consen  300 FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSND------AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLL  373 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh------hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHH
Confidence            44566677777778888888899999999999999      999999999999999999999999988  4556677888


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 015396          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEK  199 (407)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  199 (407)
                      ..+++.....++++++.++...++.|+..|.+... ..++.|..+.++-..+.|+.....+++..+||+++|.+.+..++
T Consensus       374 ~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~  453 (509)
T KOG2504|consen  374 IAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGN  453 (509)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCC
Confidence            88888889999999999999999999999998887 66899999999999999999999999999999999999884332


Q ss_pred             CCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccc
Q 015396          200 YPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (407)
Q Consensus       200 ~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (407)
                                     |...++..++..++....++..|
T Consensus       454 ---------------Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  454 ---------------YDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             ---------------eeeehhhcChHHHHHHHHHHHhH
Confidence                           33344666666666665555555

>PRK10054 putative transporter; Provisional

Probab=99.23  E-value=1.5e-10  Score=108.36  Aligned_cols=111  Identities=16%  Similarity=0.033  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHhhhccchhHH-HHHHhh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-VNFWMAVLTRFLLGSLNGLLGPI-KAYACE  161 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~  161 (407)
                      .+++.+...+.....+++.|++.||+++|+.+..+.++..++.+...+. ++.+.+.+..++.|++.+...|. .+++.+
T Consensus       246 ~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~  325 (395)
T PRK10054        246 VAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDH  325 (395)
T ss_pred             HHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            7788888877777888899999999999999999988888887776654 57777777888999998777776 889999


Q ss_pred             hccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ..|++.|++..+..+ ...+|..+||.++|.+.+
T Consensus       326 ~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~  358 (395)
T PRK10054        326 IAPPGMKASYFSAQS-LGWLGAAINPLVSGVILT  358 (395)
T ss_pred             hCCcccceehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence            999999999988655 556899999999999998

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.22  E-value=3.6e-10  Score=104.82  Aligned_cols=182  Identities=16%  Similarity=0.274  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHHHhhc-ccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQ-IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      ++....+..++.......+....+.+.++.| .+...      .+.+.++..++=++.-...+++..|+|.|+++.++.+
T Consensus       208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~------~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~  281 (400)
T PF03825_consen  208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST------IGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALV  281 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3444555666667777788888888888888 56666      7877777778888888899999999999999999999


Q ss_pred             HHHHHHHHhhcc-chHHHHHHH----HHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHH-HHHHHHHHHHHhhhhh
Q 015396          121 SVVIFNTLFGLS-VNFWMAVLT----RFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFL  193 (407)
Q Consensus       121 ~~~~~~~~~~~~-~~~~~l~~~----r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l  193 (407)
                      ..++=..+++.. ++.+...+.    ..+.|+..+...+. ..++.+..|++.|+++.++++. ..++|..+|..++|++
T Consensus       282 ~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l  361 (400)
T PF03825_consen  282 AYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL  361 (400)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999998888887 554443333    35689988887775 9999999999999999999855 6789999999999999


Q ss_pred             cCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccC
Q 015396          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPET  239 (407)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~  239 (407)
                      .+       .+|-+..+   .|...+.+.++..++..+. .++.+|+
T Consensus       362 ~~-------~~g~~~~~---~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  362 YD-------AFGARGMF---DWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HH-------Hhcchhhh---hHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            98       45544433   1333334555544443333 3344443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.21  E-value=3.1e-10  Score=101.71  Aligned_cols=172  Identities=14%  Similarity=0.156  Sum_probs=134.9

Q ss_pred             HHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHH
Q 015396           47 WIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (407)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~  125 (407)
                      .++.++..-+.+.+...-..+. .++|++..+      ..++.....+..+++++++|++.||+|.|+++..+.++..+.
T Consensus       258 LiA~~~~~DGv~til~~~~~fg~~~~gls~~~------lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~  331 (438)
T COG2270         258 LIARFFYIDGVNTILAMGGVFGAADLGLSSTE------LLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIA  331 (438)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHcCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHH
Confidence            3334333333344444444444 599999999      999999999999999999999999999999999999999988


Q ss_pred             HHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 015396          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (407)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  204 (407)
                      ++...+......+.+.-.+.|...|..+.. .++.++.+|+++-++.+|+++.....+..+||.+-+.+.+.+++     
T Consensus       332 ~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~-----  406 (438)
T COG2270         332 ALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS-----  406 (438)
T ss_pred             HHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc-----
Confidence            887777766666777778899998887775 99999999999999999999999999999999999999985432     


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHHHHhccccC
Q 015396          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPET  239 (407)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  239 (407)
                                -|..+....++..+.++.+..+|+.
T Consensus       407 ----------~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         407 ----------SRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             ----------hhhHHHHHHHHHHhhHhhEEeecCC
Confidence                      2333355555555566666666655

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.17  E-value=4e-08  Score=89.46  Aligned_cols=177  Identities=18%  Similarity=0.170  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhhhhhhchhhhH-HHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           44 FSIWIIVLCTALPISSLFPFL-YFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      ..++...|+..+-  -.-|.+ |++.+. .|.+.+|.     ..-+.-...-.+....++...+.|..|.|++++++.+.
T Consensus         8 ~llc~~gf~~~fr--PsEPfl~~yL~~~~kn~T~~qv-----~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~   80 (412)
T PF01770_consen    8 LLLCLFGFFKEFR--PSEPFLTPYLTGPDKNFTEEQV-----NNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALS   80 (412)
T ss_pred             HHHHHHHHHHhcC--CCCccchHHHcCCccCCCHHHH-----HHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            3444444444432  122444 344443 68887762     22344444555777888999999999999999999999


Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCC
Q 015396          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYP  201 (407)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~  201 (407)
                      ..+...+..+.++.+.+-+..+.-|++.+.-.+-++++-...|+++-.++.+....+.-+|..++.++|..+...     
T Consensus        81 ~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-----  155 (412)
T PF01770_consen   81 YIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-----  155 (412)
T ss_pred             HHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            999999999999999999999999999877666688888888998888999999999999999999999988761     


Q ss_pred             CcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCC
Q 015396          202 NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLH  241 (407)
Q Consensus       202 ~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  241 (407)
                         +      ..++.....+......+.++..+++|..++
T Consensus       156 ---~------~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  156 ---G------GVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             ---c------CCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence               1      333444445555444555666677776554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.17  E-value=8.2e-10  Score=102.93  Aligned_cols=123  Identities=13%  Similarity=0.119  Sum_probs=91.2

Q ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHH
Q 015396           65 YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL-SVNFWMAVLTRF  143 (407)
Q Consensus        65 ~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~  143 (407)
                      |.+.+.+|.++.+      .++..+...++..++.++.|++.||+|+|+.+..+..+.+++.++... .++.+..++..+
T Consensus       224 ~~~~~~~g~s~~~------~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  297 (382)
T PRK10091        224 PYMMFISGFSETS------MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAF  297 (382)
T ss_pred             HHHHHhcCCCHHH------HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4555668998888      999999999999999999999999999999999888887777655543 455555566666


Q ss_pred             HHhhhccc-hhHHH-HHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          144 LLGSLNGL-LGPIK-AYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       144 l~G~~~g~-~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +.+++... ..+.. ....+..+++.++.+  ..+....+|..+||.++|++.+
T Consensus       298 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~  349 (382)
T PRK10091        298 ICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLT  349 (382)
T ss_pred             HHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Confidence            66665433 33333 344444455555544  3466788999999999999988

>TIGR01272 gluP glucose/galactose transporter

Probab=99.17  E-value=1.1e-09  Score=98.64  Aligned_cols=145  Identities=16%  Similarity=0.107  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHHHh---hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMIKD---FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      .+....+..++..........+.+.+.++   +|.++++      .++..+.+..+..++.+..+++.||+|+||.+.++
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~  214 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFN  214 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            34444444444443555666677766643   5888888      99999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      .++..++.++....++...+ ..-++.|++.+...|. .+...+..|++ .+++.++. ....+|+++.|++.|.+.+
T Consensus       215 ~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       215 AFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence            88887777666555544333 3455788888887775 88888877753 45556665 5667899999999999998

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.17  E-value=2.5e-09  Score=100.70  Aligned_cols=275  Identities=18%  Similarity=0.203  Sum_probs=162.6

Q ss_pred             hhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc-----CChHHHHHHHHHHHHHHHHhhcc---
Q 015396           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-----GRKPVIIMGTASVVIFNTLFGLS---  132 (407)
Q Consensus        61 ~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----Grr~~~~~~~~~~~~~~~~~~~~---  132 (407)
                      .+..|.+.+++|+++++      .....+...+.. ...++.|.++|-+     .||+.++++.++..++.+.++..   
T Consensus        10 ~~~~~~l~~~l~ls~~~------~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~   82 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQ------LQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS   82 (433)
T ss_pred             HHHHHHHHHHcCCCHHH------HHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence            45567888999999998      777777776664 4678999999976     35666677777776655555542   


Q ss_pred             -chHHHHHHHHHHHhhhccchhHH-HHHHhhhcc--ccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccc
Q 015396          133 -VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSES  208 (407)
Q Consensus       133 -~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~  208 (407)
                       .+.....+.-++..++.....++ -+++.|...  ++.||...+.......+|.+++..++|.+.+       ..+.+.
T Consensus        83 ~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~-------~~~~~~  155 (433)
T PF03092_consen   83 ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD-------SFGPQG  155 (433)
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-------cCCCeE
Confidence             34555666667777777777765 888888873  3447888888889999999999999999988       334444


Q ss_pred             cccCCCChhHHHHHHHHHHHHHHH-HhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHH
Q 015396          209 LFGKFPYFLPCLCISLFAFGVTIA-AFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSS  287 (407)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (407)
                      .|         .+.+....+..+. .+..+|.+. .+..+. .... ++   ........-++.....++.++.+.++..
T Consensus       156 ~f---------~i~~~~~~l~~~~~~~~~~e~~~-~~~~~~-~~~~-~~---~~~~~~~~~~~~~~~l~~~~~~~~i~~~  220 (433)
T PF03092_consen  156 VF---------LISAALPLLMLIVALFLLEERKV-RPADEV-FSFG-KE---EVPCLFGSFREQLSELWRALQQRAIWQP  220 (433)
T ss_pred             Ee---------hHHHHHHHHHHHHHHHhhhhccc-cccchh-hccc-cc---ccchhhHHHHHHHHHHHHHHhhhHHHHH
Confidence            33         5555555554434 444444211 111100 0000 00   0000000001122244556667777776


Q ss_pred             HH-HHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHH
Q 015396          288 II-VYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (407)
Q Consensus       288 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  366 (407)
                      .+ ..++.......... -..|...... .+-++++...+.+..+..++.+++.. +..+.-.+..-|++.....++..+
T Consensus       221 ~~~~~~~~~~~~~~~~a-~~fy~~~~~~-~gp~fs~~f~~~~~~vg~~~~l~g~~-~y~~~~~~~~~R~~~~~t~~~~~~  297 (433)
T PF03092_consen  221 ILFFIFFFNLPPSISSA-SSFYFQTDAL-GGPHFSPSFYGTLSIVGSIASLLGIL-LYRKYFSNWSWRRIFVVTTLVSVL  297 (433)
T ss_pred             HHHHHHHHHhccCCCCc-cEEEEEeccc-cccccCHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHH
Confidence            66 33333333222211 0112222111 13458999999888777777777765 555555556667776666655544


Q ss_pred             H
Q 015396          367 L  367 (407)
Q Consensus       367 ~  367 (407)
                      .
T Consensus       298 ~  298 (433)
T PF03092_consen  298 A  298 (433)
T ss_pred             H
Confidence            3

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.17  E-value=3e-10  Score=101.76  Aligned_cols=173  Identities=17%  Similarity=0.191  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      ++.+.+.+.++...-..-.+...+| ++.++|+.++.+      .|.....+.+...+..+..|+++||+|.+|++....
T Consensus       218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~------Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f  291 (417)
T COG2223         218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVT------AGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVF  291 (417)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh------HHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHH
Confidence            4455566666666666666777777 667899999999      999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHhhcc-------chHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhh
Q 015396          120 ASVVIFNTLFGLS-------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (407)
Q Consensus       120 ~~~~~~~~~~~~~-------~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (407)
                      ...+++..+.+..       .+....++..+..++..|.-.. ++.++..++|+ +-|.+.|+.....++|+..-|..-+
T Consensus       292 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g  370 (417)
T COG2223         292 VGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFG  370 (417)
T ss_pred             HHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHH
Confidence            8888887777664       3444444444444444444333 36667777764 7788999999999999999998888


Q ss_pred             hhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhc
Q 015396          192 FLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (407)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (407)
                      ...+.++               .+...+++.....+++.+..+.
T Consensus       371 ~~~~~tg---------------~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         371 VSLDLTG---------------SYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             HHHHhcc---------------cHHHHHHHHHHHHHHHHHHHHH
Confidence            8887332               2444556666665555554443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.17  E-value=3.2e-10  Score=106.20  Aligned_cols=130  Identities=12%  Similarity=0.053  Sum_probs=104.9

Q ss_pred             hhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccc-ccCChHHHHHHHHHHHHHHHHhhccchHHHHH
Q 015396           61 FPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (407)
Q Consensus        61 ~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (407)
                      ...+|.+.++.+.++.+      .+++.+...++...+..+.+++.| |++.|+.+..+.++.+++.++.+.+++++.+.
T Consensus       228 ~~~~p~~~~~~~~~~~~------~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  301 (400)
T PRK11646        228 MLMLPIMVNDIAGSPSA------VKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLF  301 (400)
T ss_pred             HHhhhhhHHhhcCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34567776776556666      888888877776666666677665 46667777788888888887777888888777


Q ss_pred             HHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCC
Q 015396          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (407)
Q Consensus       140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (407)
                      +..++.|++.+...|. .+++.|..|+++|++++++.+....+|..+||.++|++.+.
T Consensus       302 ~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        302 TLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            7778888887777665 88999999999999999999999999999999999999984

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.16  E-value=1.2e-09  Score=92.32  Aligned_cols=152  Identities=20%  Similarity=0.269  Sum_probs=112.3

Q ss_pred             CCchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHH
Q 015396           37 GLPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII  116 (407)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~  116 (407)
                      ..|.+.+..++..+-...+....+.+  ..+.+.+|+|+.+      .+.+.+.....+++.+++.|.++||+|++...+
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~--~fF~~rfGlS~~~------a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv  334 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGP--MFFQKRFGLSAVS------AGNILSTVYGISAVLSPVFGAISDKYGFNLWWV  334 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhH--HHHHHhhCCChhh------ccchhhhhhhhhhhhhhhHHHhHhhhcceehhH
Confidence            34555555555555444444333332  2678999999999      888888888888999999999999999998777


Q ss_pred             HHHHHH-HHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          117 MGTASV-VIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       117 ~~~~~~-~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      .+..+. .++.-...++  .+.=+++..+.|+........ ...++...|+++.|++.|..+...++|.++.|+++|++.
T Consensus       335 ~~a~~~tl~~H~~l~Ft--~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~  412 (459)
T KOG4686|consen  335 ASACILTLLGHSGLFFT--FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIA  412 (459)
T ss_pred             HHHHHHHHHHhhhHHhh--hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence            654443 3443333332  222234556788877776664 888889999999999999999999999999999999999


Q ss_pred             CCCC
Q 015396          195 QPAE  198 (407)
Q Consensus       195 ~~~~  198 (407)
                      +..+
T Consensus       413 d~~g  416 (459)
T KOG4686|consen  413 DGDG  416 (459)
T ss_pred             cCCC
Confidence            8544

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.15  E-value=2.2e-09  Score=91.83  Aligned_cols=134  Identities=13%  Similarity=0.184  Sum_probs=108.2

Q ss_pred             hhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc-
Q 015396           54 ALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-  132 (407)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-  132 (407)
                      ....+.+..+-|.+++.+|.|.+|      ...+.++..+|..+ .++.|.+.|++|++.++.++.+...++......+ 
T Consensus        15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~------l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~   87 (250)
T PF06813_consen   15 SGTTYTFSAYSPQLKSRLGYSQSQ------LNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAV   87 (250)
T ss_pred             cCcccchhhhhHHHHHHhCCCHHH------HHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            335567777788999999999999      99999999999876 5899999999999999999999999988766542 


Q ss_pred             ------chHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          133 ------VNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       133 ------~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                            .++|.+.+..++.|.+.+.... +.....+.|| ++||++.|+.-...++++.+-..+...+.+
T Consensus        88 ~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   88 SGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             hCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence                  4678888777888777666555 3566668887 589999999999889888877666665554

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.15  E-value=7.2e-10  Score=104.30  Aligned_cols=145  Identities=12%  Similarity=0.124  Sum_probs=98.7

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhh--cccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHH-HHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDF--QIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV-IIMGTAS  121 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~-~~~~~~~  121 (407)
                      ......++.......+...+|.+.+++  +.+..+      .+...+...++..++.++.|+++||++||+. +....+.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~------~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~  319 (412)
T TIGR02332       246 LYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIM------IGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLF  319 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------hHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHH
Confidence            344444555556666778889888875  456666      8888999999999999999999999997774 3333334


Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ..++..+....++....+++-.+.+++.....+. .....|.+|+++|++++|+.+....+|.+++|.+.+.+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       320 AAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence            4333322222223222222222223332222333 4555778999999999999999999999999999999998

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.15  E-value=6e-10  Score=104.62  Aligned_cols=149  Identities=14%  Similarity=0.167  Sum_probs=100.3

Q ss_pred             HHHHHhhcccccccchhhHHHHHHHHHH-HHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHh---hcc-chHHHHH
Q 015396           65 YFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GLS-VNFWMAV  139 (407)
Q Consensus        65 ~~~~~~~~~s~~~~~~~~~~g~~~~~~~-~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~  139 (407)
                      +.+.+++|.++++      .+++.+... ++..++.++.|++.||+|+|+.+..+.++..+..+..   +.. ++.+.++
T Consensus       234 ~~l~~~~G~~~~~------~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~  307 (402)
T PRK11902        234 TFLIRGAGFSAGE------VGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMA  307 (402)
T ss_pred             HHHHHhcCCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            4566778999888      898876654 5678999999999999999998877776666554333   343 4556655


Q ss_pred             HHHHH----HhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCC
Q 015396          140 LTRFL----LGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFP  214 (407)
Q Consensus       140 ~~r~l----~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~  214 (407)
                      +.-++    .|++.+...+. ..++.+.+|.+++    ++.+...++|..+++.++|.+.+                +++
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~----------------~~G  367 (402)
T PRK11902        308 LAIGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVE----------------AYG  367 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH----------------HhC
Confidence            55544    44444444554 6677777775554    45555567777777778999998                445


Q ss_pred             ChhHHHHHHHHHHHHHHHHhccccC
Q 015396          215 YFLPCLCISLFAFGVTIAAFWLPET  239 (407)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~e~  239 (407)
                      |+..+.+.++.+++.++.....+.+
T Consensus       368 ~~~~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        368 WPGFYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5555577777776665555444433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.14  E-value=7.8e-10  Score=105.94  Aligned_cols=176  Identities=17%  Similarity=0.192  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHH------
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPV------  114 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~------  114 (407)
                      .++..++..+........+...+|.+. +.+|.+..+      .++..++..++..++.++.|+++||+++|+.      
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~  335 (465)
T TIGR00894       262 PVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKE------NGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAA  335 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            344555666666666667777888554 668999888      9999999999999999999999999865421      


Q ss_pred             --HHHHHHHH--HHHHHHhhc-cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHH
Q 015396          115 --IIMGTASV--VIFNTLFGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (407)
Q Consensus       115 --~~~~~~~~--~~~~~~~~~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  188 (407)
                        +..+....  .+..+.... ..+.+..++.-.+.+.+.+...+. .....|..| +.+|.++++.+....+|..++|.
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~  414 (465)
T TIGR00894       336 RKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIAST  414 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence              11111111  111111122 234444444445555544444443 445556666 48999999999999999999999


Q ss_pred             hhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccc
Q 015396          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (407)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (407)
                      +.+.+.+..       +      ...|...+.+.++..++..+.....+
T Consensus       415 l~g~~~~~~-------~------~~~~~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       415 LAGNILSQD-------S------KNVWLIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             hhheeeCCC-------C------chHHHHHHHHHHHHHHHHHHHeeeee
Confidence            999888621       0      12255566777766666555544443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.12  E-value=6.8e-10  Score=107.01  Aligned_cols=143  Identities=17%  Similarity=0.130  Sum_probs=115.8

Q ss_pred             HHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHH
Q 015396           47 WIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (407)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~  125 (407)
                      .+..++..+........+|.+. +.+|.++.+      .++......++..++.++.|++.||+|||+.+..+..+.+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~  334 (485)
T TIGR00711       261 CVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQ------AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVG  334 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            3444444444444555677555 457999888      999999999999999999999999999999999998888888


Q ss_pred             HHHhhc----cchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          126 NTLFGL----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       126 ~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ..+..+    ..+.+.+....++.|++.+...+ ......+..|+++|+++.++.+....+|..+|+.+.+.+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       335 FYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777652    23566777778899999887655 47777788999999999999999999999999999988876

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.11  E-value=2.9e-10  Score=99.56  Aligned_cols=128  Identities=20%  Similarity=0.275  Sum_probs=94.1

Q ss_pred             HHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhh-ccchhHHHHHHhhhccccchhh
Q 015396           92 MFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL-NGLLGPIKAYACEIFREEHQAL  170 (407)
Q Consensus        92 ~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~-~g~~~~~~~~~~~~~~~~~r~~  170 (407)
                      .+.-..|.++.+++.||+|||+.+..+.+++++..++...+.+-....+..+..-++ .|.+.+++.|..|.+|...|+.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence            345577899999999999999999999999999988777665433222222222222 3445666899999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccc
Q 015396          171 GLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLP  237 (407)
Q Consensus       171 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (407)
                      +.|....+..+|+++.|+++ ...+                 -.-..+..+.+...++..+...++|
T Consensus       471 gvGtcSsmaRIggI~~p~iA-~~~e-----------------~s~sl~i~vy~~~~ilagIavcffP  519 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIA-MRAE-----------------LSTSLPIFVYGALFILAGIAVCFFP  519 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHH-HHhc-----------------cceeehHHHHHHHHHHHHHHheeee
Confidence            99999999999999999999 3332                 1123344566666666666666666

>TIGR00901 2A0125 AmpG-related permease

Probab=99.10  E-value=9.7e-10  Score=101.46  Aligned_cols=132  Identities=15%  Similarity=0.128  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHH-HHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFM-FGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~-~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      ++.+.+..++............|.+.+++|.+.++      .+.+.++.. ++..++.+++|++.||+|||+.+..+.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~------~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~  284 (356)
T TIGR00901       211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEE------IALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIV  284 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33333444444555556667778777778998888      888887665 57789999999999999999998888888


Q ss_pred             HHHHHHHhhcc-----------chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHH
Q 015396          122 VVIFNTLFGLS-----------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG  180 (407)
Q Consensus       122 ~~~~~~~~~~~-----------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~  180 (407)
                      .+++..+..+.           ++.+.+..+.++.+++.+...+. .+++.|.+|+++||+.+++.+...+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       285 QALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            77766654432           45677888888999998887775 9999999999999999999877654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.07  E-value=7.4e-10  Score=101.86  Aligned_cols=136  Identities=21%  Similarity=0.259  Sum_probs=111.1

Q ss_pred             HHHHHHHhhhhhhchhhhHHHH-HHhhccc-ccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFM-IKDFQIA-KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s-~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~  123 (407)
                      .....+...+.........|.+ .+++|.+ ..+      .+...+...++..++.++.|+++||+|+|+..........
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  284 (352)
T PF07690_consen  211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQ------AGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLI  284 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            3334444444555577788876 7889999 667      8999999999999999999999999999888887777777


Q ss_pred             HHHHHhhccc---hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHH
Q 015396          124 IFNTLFGLSV---NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGP  187 (407)
Q Consensus       124 ~~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  187 (407)
                      +..+......   +....++..++.|++.+...+. .+++.|.+|+++|+++.++.+...++|..+||
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  285 LGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            7766665543   4567777888899988887775 99999999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.07  E-value=2.7e-09  Score=113.68  Aligned_cols=134  Identities=13%  Similarity=0.101  Sum_probs=114.2

Q ss_pred             hhhchhhhHH-HHHHhhccccc-ccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccc
Q 015396           56 PISSLFPFLY-FMIKDFQIAKR-EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV  133 (407)
Q Consensus        56 ~~~~~~~~~~-~~~~~~~~s~~-~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~  133 (407)
                      ........+| .+.+.+|.+.. +      .+++.+...++.++++++.|+++||+++|+.+.++.++.+++.++..+..
T Consensus       247 ~~~~~~~~~~~~~~~~~g~s~~~~------~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  320 (1146)
T PRK08633        247 ISQLAQANFPAYAKEVLGLDNTFQ------VQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP  320 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh
Confidence            3334445555 44567898888 7      89999999999999999999999999999999888888888888888888


Q ss_pred             hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       134 ~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +.+.+++..++.|++.+...+. .+++.+..|++.|++++++.++...+|.++++.+++.+..
T Consensus       321 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        321 SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999988876665 8999999999999999999999999999888888877653

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.06  E-value=1.9e-09  Score=103.94  Aligned_cols=142  Identities=17%  Similarity=0.131  Sum_probs=113.7

Q ss_pred             HHHHHhhhhhhchhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHH
Q 015396           48 IIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~  126 (407)
                      +..+.............|.+ ++.+|.++.+      .|+......++..++.++.|++.||+|+|+.+..+.++..++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~------ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~  339 (495)
T PRK14995        266 VMAMTAMITLVGFELLMAQELQFVHGLSPLE------AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSF  339 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence            33333344444445566644 4567999988      9999999999999999999999999999999988888877776


Q ss_pred             HHhhc---cchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          127 TLFGL---SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       127 ~~~~~---~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ++...   .++.+...+..++.|++.|...+ ....+.+..|+++++.+.++.+....+|..+|+.+.+.+.+
T Consensus       340 ~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        340 YGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55433   34566667778899999888666 47788888999999999999999999999999999988865

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.05  E-value=2.8e-09  Score=100.90  Aligned_cols=149  Identities=18%  Similarity=0.211  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      +.+..+....++............+++.++.--+++.      .+.+..+..++..++.+++++++||+|+|+.+..+.+
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~------~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~  298 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGL------ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLL  298 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchh------hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHH
Confidence            3445566666777777777777777776654333345      7888889999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccc--hHHHHHHHHHHHhhhccchhHH-HHHHhhhccc-------cchhhhhHHHHHHHHHHHHHHHHhh
Q 015396          121 SVVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-------EHQALGLSTVSTAWGIGLIIGPALG  190 (407)
Q Consensus       121 ~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~  190 (407)
                      +.+++.++..+.+  |.+.+++..++.|++.+...+. .++++|..+.       ++.|..++..+....+|..+++.+.
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~  378 (428)
T PF13347_consen  299 LAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV  378 (428)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence            9999998888775  9999999999999998887775 8999998873       3458889999999999999999999


Q ss_pred             hhhcC
Q 015396          191 GFLAQ  195 (407)
Q Consensus       191 ~~l~~  195 (407)
                      +.+.+
T Consensus       379 g~~l~  383 (428)
T PF13347_consen  379 GLLLA  383 (428)
T ss_pred             HHHHH
Confidence            98886

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.05  E-value=9.2e-09  Score=95.02  Aligned_cols=143  Identities=12%  Similarity=0.056  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCC---hHHHHH-
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR---KPVIIM-  117 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Gr---r~~~~~-  117 (407)
                      .++.+....++.......+..++|.+.++.|.+. +      .+...++..+...++   .++++||.+|   |+.... 
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~-~------~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~  262 (368)
T TIGR00903       193 DLWIIGAILGFGVALFDNLAIWLEAALRPAGLED-I------AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRA  262 (368)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCh-H------HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHH
Confidence            3455555666666667777788998888877664 3      455555555544444   4677777654   333332 


Q ss_pred             HHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          118 GTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      ..++.++.....+...+.+..++.-.+.|++.....+ .+++.+|.+|++.|++++|+.+....+|+.++|++.+.+.
T Consensus       263 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       263 AALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            3344444444445555554445555666666555555 4889999999999999999999999999999999888776

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.05  E-value=3.5e-09  Score=98.77  Aligned_cols=125  Identities=18%  Similarity=0.255  Sum_probs=93.1

Q ss_pred             chhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc-----
Q 015396           59 SLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS-----  132 (407)
Q Consensus        59 ~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----  132 (407)
                      ......|.+ .+++|.++.+      .+++.+...++..++.++.|++.||+|||+.+..+..+..++.+++...     
T Consensus       224 ~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (385)
T TIGR00710       224 AFFSGAPFVYIDIMGVSPSV------FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGL  297 (385)
T ss_pred             HHHHcChHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            334445644 4578988888      9999999999999999999999999999999988877777766555442     


Q ss_pred             chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHH-HHHHHHHHhh
Q 015396          133 VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG  190 (407)
Q Consensus       133 ~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~  190 (407)
                      ++.+.+++..++.|++.+...+. .....|..| ++|+++.++.+.... +|.+.+|.++
T Consensus       298 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       298 GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            23445555667788887776665 777788776 679999999876654 4555555554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.04  E-value=9.6e-09  Score=92.84  Aligned_cols=147  Identities=21%  Similarity=0.315  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccc----ccCChHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD----RYGRKPVII  116 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~Grr~~~~  116 (407)
                      +.++.+....+...++...-..+.+++.+++|++..-      .+.+-....+...+.+|+.|..+|    |+||||.++
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI  105 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKW------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFI  105 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCccc------ccccccccccccceecccccccccccccccccccchH
Confidence            5666666666777777777788888999999999887      777777777888899999999999    589988776


Q ss_pred             HH-HHHHHHHHHHhhccchHH-----------------HHHHHHHHHhhhc-cchhHHHHHHhhhccccchhh-hhHHHH
Q 015396          117 MG-TASVVIFNTLFGLSVNFW-----------------MAVLTRFLLGSLN-GLLGPIKAYACEIFREEHQAL-GLSTVS  176 (407)
Q Consensus       117 ~~-~~~~~~~~~~~~~~~~~~-----------------~l~~~r~l~G~~~-g~~~~~~~~~~~~~~~~~r~~-~~~~~~  176 (407)
                      .. .+...++.++..++.++.                 .++++--+.-++. -...|+.+++.|...++++.+ +++.+.
T Consensus       106 ~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~  185 (498)
T KOG0637|consen  106 LAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFS  185 (498)
T ss_pred             HHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHH
Confidence            54 455566666666655432                 2333333333444 345668999999998777777 999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 015396          177 TAWGIGLIIGPALGGFL  193 (407)
Q Consensus       177 ~~~~~g~~~~~~~~~~l  193 (407)
                      ...++|+.+|..+++++
T Consensus       186 ~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  186 FFMAVGNVLGYALGSYL  202 (498)
T ss_pred             HHHHhcceeeeeccccc
Confidence            99999999998888644

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.04  E-value=3.9e-09  Score=98.76  Aligned_cols=123  Identities=11%  Similarity=0.033  Sum_probs=84.2

Q ss_pred             hHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHH
Q 015396           63 FLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLT  141 (407)
Q Consensus        63 ~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  141 (407)
                      ..| .+.+++|.++.+      .+...+...++..++.++.|++.||+|||+.+..+.++..++.++..+.++.+..+..
T Consensus       225 ~~~~~~~~~~g~~~~~------~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (392)
T PRK10473        225 TSPVLLMEQMGFSRGE------YAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFG  298 (392)
T ss_pred             hCHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334 345678888887      8999999999999999999999999999999999998888888777776655544444


Q ss_pred             HHHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          142 RFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       142 r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      -.+.+.+.+...+ .....+..|.++|+   +.......++..+++.+++++.+
T Consensus       299 ~~l~~~g~~~~~~-~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        299 ITLICAGFSVGFG-VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             HHHHHHHHHHHhH-HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443333222 12233444544443   34444556677777777777776

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.03  E-value=3.6e-09  Score=112.52  Aligned_cols=144  Identities=13%  Similarity=0.067  Sum_probs=113.4

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~  124 (407)
                      ..+..+...+....+...+|.+. +.+|.+..+      .|++.+.+.++.++++++.|+++|+.++++.+..+.++.++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~------~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        230 AILGISWFWLVGAVVLSQLPLLAKETLGGDENV------ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGL  303 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHH------HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHH
Confidence            33334444444445555677655 457998888      99999999999999999999999988877766666555555


Q ss_pred             HHHHhhcc--------------------chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHH
Q 015396          125 FNTLFGLS--------------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGL  183 (407)
Q Consensus       125 ~~~~~~~~--------------------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~  183 (407)
                      +.+...+.                    .+.+.+++..++.|++.+...+. .+++.+.+|++.||+++|..++...+|.
T Consensus       304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~  383 (1140)
T PRK06814        304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFM  383 (1140)
T ss_pred             HHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHH
Confidence            44433332                    67778888889999988887764 9999999999999999999999999999


Q ss_pred             HHHHHhhhhhcC
Q 015396          184 IIGPALGGFLAQ  195 (407)
Q Consensus       184 ~~~~~~~~~l~~  195 (407)
                      .+++++.+.+.+
T Consensus       384 ~ig~~~~g~l~~  395 (1140)
T PRK06814        384 VAGTIILALLQA  395 (1140)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999874

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.02  E-value=4.9e-09  Score=95.90  Aligned_cols=142  Identities=25%  Similarity=0.287  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~  162 (407)
                      .|.+.+...+.-++...+..++.+|+|.|+.++++..+..+=.+.++++++.+.+.+.+.+.|+-.+..... ..|+++.
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999999999999999999999999999988887775 9999999


Q ss_pred             ccccchhhhhHHH-HHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCC
Q 015396          163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETL  240 (407)
Q Consensus       163 ~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~  240 (407)
                      +|+|..++...+. +....+|..+.+.++|.+.|                +.|++..+++.+.+.++.. +..+.+++++
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd----------------~~G~~~tylimg~iv~~~~li~~f~l~~~~  404 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD----------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDK  404 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh----------------hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence            9999888888875 78899999999999999999                5566666677776666544 4455565544


Q ss_pred             C
Q 015396          241 H  241 (407)
Q Consensus       241 ~  241 (407)
                      +
T Consensus       405 ~  405 (412)
T PF01306_consen  405 K  405 (412)
T ss_dssp             S
T ss_pred             c
Confidence            3

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.01  E-value=6.6e-09  Score=97.27  Aligned_cols=146  Identities=21%  Similarity=0.157  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (407)
                      .+.+++.+++.+.....+...+|.+.++ ..+...      ......+..+...+..+++|+++||+|+||++.++.+..
T Consensus       254 ~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~------~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~  326 (462)
T PRK15034        254 LWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVN------ILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFM  326 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHH------HHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHH
Confidence            4445555555555555556667766544 222222      223334456777889999999999999999999888777


Q ss_pred             HHHHHHhh--c----cchHHHHHHHHHHHhhhccchhH-HHHHHhhhccc---------------------cchhhhhHH
Q 015396          123 VIFNTLFG--L----SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFRE---------------------EHQALGLST  174 (407)
Q Consensus       123 ~~~~~~~~--~----~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~---------------------~~r~~~~~~  174 (407)
                      .++.....  .    ..+++.+.+..+...++.|.... .+.++.+.+|+                     ++-|.+.|+
T Consensus       327 ~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~  406 (462)
T PRK15034        327 AIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGF  406 (462)
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHH
Confidence            76653321  1    13566666665555555555444 47777777764                     145678888


Q ss_pred             HHHHHHHHHHHHHHhhhhhcC
Q 015396          175 VSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       175 ~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ......+|+.+-|.+-+...+
T Consensus       407 v~a~G~~Ggf~~p~~~g~~~~  427 (462)
T PRK15034        407 ISAIGAVGGFFIPQAFGMSLN  427 (462)
T ss_pred             HHHHHHcccchhhHHHHHHHH
Confidence            888999999999988777776

>PRK11043 putative transporter; Provisional

Probab=99.01  E-value=1.1e-08  Score=96.15  Aligned_cols=129  Identities=11%  Similarity=0.036  Sum_probs=96.6

Q ss_pred             hhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHh---hc--cch
Q 015396           60 LFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---GL--SVN  134 (407)
Q Consensus        60 ~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---~~--~~~  134 (407)
                      +....|.+.+++|.++.+      .|+......++..++.+..+++.||+|+|+.+....+..+++.+..   ..  .++
T Consensus       222 ~~~~~p~~~~~~g~s~~~------~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (401)
T PRK11043        222 WLTGSPFILEQMGYSPAD------IGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPS  295 (401)
T ss_pred             HHHHhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            344567777888998888      8888888888889999999999999999987655554444433222   11  345


Q ss_pred             HHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          135 FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       135 ~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      .+.+++...+.|++.+...+. .+...|..| ++|+++.++.+.....+..+++.+.+.+.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        296 LVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            555666667778877776664 666667665 689999999998888888888888888876

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.00  E-value=1.7e-08  Score=94.31  Aligned_cols=122  Identities=13%  Similarity=0.095  Sum_probs=99.3

Q ss_pred             HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Q 015396           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLL  145 (407)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~  145 (407)
                      ...+.+|.++.+      .|++.+...++..++++..+++.||.++|+++..+.. .++..+..++.++++...+..++.
T Consensus       231 ~~~~~lg~s~~~------~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~  303 (393)
T PRK11195        231 WAPVALGITLNQ------PAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILI  303 (393)
T ss_pred             HHHHHcCCChhH------HHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHH
Confidence            345568999888      9999999999999999999999999999988887753 344444555667777777778889


Q ss_pred             hhhccchhH-HHHHHhhhccccc-hhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          146 GSLNGLLGP-IKAYACEIFREEH-QALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       146 G~~~g~~~~-~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      |++.+...+ ..+.+.+..|++. +|++.++.+....+|..++..+.+.+.
T Consensus       304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            998887666 4777778766554 799999999999999999999998664

>PRK09848 glucuronide transporter; Provisional

Probab=99.00  E-value=2.6e-09  Score=101.85  Aligned_cols=146  Identities=16%  Similarity=0.133  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHHHHH-hhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHH
Q 015396           44 FSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (407)
                      ....+..++............|.+.+ .+|.+...      .++......++..++.++++++.||+|+|+++..+.++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~  304 (448)
T PRK09848        231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLF------TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLG  304 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            33344444444444444445554443 45654433      444444446777889999999999999999999999888


Q ss_pred             HHHHHHhhcc--chHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc-------chhhhhHHHHHHHHHHHHHHHHhhhh
Q 015396          123 VIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE-------HQALGLSTVSTAWGIGLIIGPALGGF  192 (407)
Q Consensus       123 ~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (407)
                      .++.+...+.  .+.+.+++..++.|++.+...+. .++.+|..|.+       ++|...+..+....+|..+|+.+.+.
T Consensus       305 ~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~  384 (448)
T PRK09848        305 TCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF  384 (448)
T ss_pred             HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877766654  36677777788889988887775 88888888754       45888999999999999999999999


Q ss_pred             hcC
Q 015396          193 LAQ  195 (407)
Q Consensus       193 l~~  195 (407)
                      +.+
T Consensus       385 ~l~  387 (448)
T PRK09848        385 ILG  387 (448)
T ss_pred             HHH
Confidence            876

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.98  E-value=2.8e-07  Score=90.50  Aligned_cols=160  Identities=15%  Similarity=0.140  Sum_probs=115.3

Q ss_pred             chhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-cCChHHHHHHHHHHHHHHHHhhccch---
Q 015396           59 SLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVIIMGTASVVIFNTLFGLSVN---  134 (407)
Q Consensus        59 ~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~---  134 (407)
                      +...+..++.+.+|.+.++      +..+...+....-+..++.|+++|+ +||++.+.++.++..++..+.++...   
T Consensus         6 m~aiLvlYl~~~lg~~~~~------A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~   79 (654)
T TIGR00926         6 MRTILVLYFLNFLGFSEST------STVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSS   79 (654)
T ss_pred             cHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCccc
Confidence            3444555667778888887      7777777777777889999999996 69999999999999998887766421   


Q ss_pred             -----HHHHHHHHHHHhhhccchhHH-HHHHhhhcccc---chhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCccc
Q 015396          135 -----FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFS  205 (407)
Q Consensus       135 -----~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~g  205 (407)
                           ....+++-.+..+|.|..-++ .+...|.++++   +|-..+.++..+.++|+.+++.+.+++.+..+.+..   
T Consensus        80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~---  156 (654)
T TIGR00926        80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGC---  156 (654)
T ss_pred             ccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---
Confidence                 223555666777788888776 88999998754   366788888999999999999999988752111000   


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHHHH
Q 015396          206 SESLFGKFPYFLPCLCISLFAFGVTIAA  233 (407)
Q Consensus       206 w~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (407)
                            ..+|...+.+.++..++.++..
T Consensus       157 ------~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       157 ------QDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             ------CcchHHHHHHHHHHHHHHHHHH
Confidence                  2346666666666655555443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.96  E-value=1.5e-08  Score=94.31  Aligned_cols=131  Identities=17%  Similarity=0.165  Sum_probs=87.2

Q ss_pred             hhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhh--
Q 015396           54 ALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--  130 (407)
Q Consensus        54 ~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~--  130 (407)
                      ......+....| .+.+++|.++.+      .++..+...++..++.++.|++.||+|||+.+..+..+..+..+...  
T Consensus       207 ~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~  280 (377)
T PRK11102        207 FAGMFSFLTAGPFVYIELNGVSPQN------FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVS  280 (377)
T ss_pred             HHHHHHHHHcCHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444445 455668999888      99999999999999999999999999999998888765444332221  


Q ss_pred             -c-cchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHH-HHHHHHHHHHHhhh
Q 015396          131 -L-SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGG  191 (407)
Q Consensus       131 -~-~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~  191 (407)
                       . ..+.+.+.++..+.+.+.+.... ...++.|..| ++|+++.+..+. ...+|..+++++++
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        281 ALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence             1 22445544444444444444333 3566777766 789999888744 35566777776654

>PRK10133 L-fucose transporter; Provisional

Probab=98.96  E-value=1.2e-08  Score=96.69  Aligned_cols=125  Identities=11%  Similarity=0.047  Sum_probs=97.9

Q ss_pred             hhHHHH-H-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHH
Q 015396           62 PFLYFM-I-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAV  139 (407)
Q Consensus        62 ~~~~~~-~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~  139 (407)
                      .+.+.+ . +.+|.++.+      .++....+.++..++.++.|++.||+|+|+++..+.++..++..+..+.++.+ .+
T Consensus       279 ~~~~~~l~~~~~g~s~~~------ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~  351 (438)
T PRK10133        279 SYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GL  351 (438)
T ss_pred             HHHHHHHhhhcCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HH
Confidence            344533 3 467999998      99999999999999999999999999999999888877777666655555543 24


Q ss_pred             HHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          140 LTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       140 ~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ..-.+.|++.+...|. .+...|..|+ +.+.+.++... ..+|..++|.+.|.+.+
T Consensus       352 ~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~  406 (438)
T PRK10133        352 IALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSD  406 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHH
Confidence            5567889998888885 8888888775 45667777754 44688889999999987

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.96  E-value=7.7e-09  Score=99.18  Aligned_cols=148  Identities=11%  Similarity=0.048  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      .+..+....++............+++.+....+.+.      .+++.+...++.+++.+++++++||+|+|+.+.++.++
T Consensus       232 ~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~------~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~  305 (473)
T PRK10429        232 QLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADL------FPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIF  305 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            334444444444455555555555555444333344      66777777788899999999999999999999888877


Q ss_pred             HHHHHHHhhc-----cchHHHHHHHHHHHhhhccchhHH-HHHHhhhcc-------ccchhhhhHHHHHHHHHHHHHHHH
Q 015396          122 VVIFNTLFGL-----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPA  188 (407)
Q Consensus       122 ~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~  188 (407)
                      ..++.+....     ..+.+.+++.-++.|++.+...+. .++++|..|       +++.|..++......-+|..+++.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~  385 (473)
T PRK10429        306 PVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAF  385 (473)
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHH
Confidence            6665544322     345677777778888887776665 889999866       334456888899999999999999


Q ss_pred             hhhhhcC
Q 015396          189 LGGFLAQ  195 (407)
Q Consensus       189 ~~~~l~~  195 (407)
                      +.|++.+
T Consensus       386 i~g~~l~  392 (473)
T PRK10429        386 FIGVVLG  392 (473)
T ss_pred             HHHHHHH
Confidence            9999887

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.95  E-value=9.7e-07  Score=81.95  Aligned_cols=297  Identities=12%  Similarity=0.123  Sum_probs=168.5

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHHHhhccc-ccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIA-KREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      ....++...++...+.-+.-...+.+..+...+ ---      .+...-.-.+..++.++..|.+.||..|.+++..+.+
T Consensus         3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~------~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~   76 (432)
T PF06963_consen    3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLP------VSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLV   76 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHH
Confidence            445677788888888888888888777666332 211      3444444556678889999999999999998766654


Q ss_pred             HHHHH----HHHhh--c--cc----hHHH---HHHHHHHHhhhccchhHH--HHHHhhhc------cccchhhhhHHHHH
Q 015396          121 SVVIF----NTLFG--L--SV----NFWM---AVLTRFLLGSLNGLLGPI--KAYACEIF------REEHQALGLSTVST  177 (407)
Q Consensus       121 ~~~~~----~~~~~--~--~~----~~~~---l~~~r~l~G~~~g~~~~~--~~~~~~~~------~~~~r~~~~~~~~~  177 (407)
                      .--++    +.+..  +  ..    +.+.   +++.-.+.|.-.-....+  .++=.||.      +++.+.+.++...-
T Consensus        77 ~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRR  156 (432)
T PF06963_consen   77 VQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRR  156 (432)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHH
Confidence            43322    22111  1  11    1122   222222223222222222  22233443      34455666666666


Q ss_pred             HHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-Hhcc-------ccCCCCCCCCcch
Q 015396          178 AWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWL-------PETLHRHNDDDDS  249 (407)
Q Consensus       178 ~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~e~~~~~~~~~~~  249 (407)
                      .--+..+++|++.|.+.+                ..+......+.++..++.+.. .+++       |+-..+.+.++++
T Consensus       157 IDL~ckllaPl~vG~l~t----------------~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~  220 (432)
T PF06963_consen  157 IDLFCKLLAPLFVGLLMT----------------FASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESE  220 (432)
T ss_pred             HHHHHHHHHHHHHHHHhh----------------ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccc
Confidence            777889999999999987                344455445555555544433 2222       2211111111111


Q ss_pred             hhhhhhhhhhc------hhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchh
Q 015396          250 CDVSYDALESA------SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ  323 (407)
Q Consensus       250 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~  323 (407)
                      .+...++..+.      .+...+.-.+....|+.-++++.+.. .+...+.++...++...+..|+..      .|+++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vfla-s~alalLY~TVLsf~~lmt~yl~~------~G~s~~  293 (432)
T PF06963_consen  221 SSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLA-SFALALLYFTVLSFGGLMTAYLKS------QGYSPS  293 (432)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHH-HHHHHHHHHHHhcCcHHHHHHHHH------CCCCHH
Confidence            00000000000      00001111112345555666665444 444445555566777777778877      699999


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHH
Q 015396          324 MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL  368 (407)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  368 (407)
                      ..|.+-....+.++.+.. +.+++.+|+|..+.-..+.......+
T Consensus       294 ~igi~R~~gav~Gl~gT~-~~p~l~~riGlvr~G~~~l~~q~~~L  337 (432)
T PF06963_consen  294 VIGIFRGLGAVFGLLGTW-VYPWLMKRIGLVRAGLWSLWWQWVCL  337 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            999999999999999985 99999999998888777766544333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK09669 putative symporter YagG; Provisional

Probab=98.94  E-value=4.3e-09  Score=100.13  Aligned_cols=112  Identities=20%  Similarity=0.280  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHH-hhc-cchHHHHHHHHHHHhhhccchhHH-HHHHh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTL-FGL-SVNFWMAVLTRFLLGSLNGLLGPI-KAYAC  160 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~-~~~-~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~  160 (407)
                      .+.+.....++..++.+++++++||+|+|+.+..+.++..+..+. ... .++.+.+++..++.|++.+...+. .++++
T Consensus       266 ~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~a  345 (444)
T PRK09669        266 ATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFS  345 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566667788889999999999999999998887766644332 222 457777888888999998887776 89999


Q ss_pred             hhccc-------cchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          161 EIFRE-------EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       161 ~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      |..|.       +..|...+.......+|..+|+.++|.+.+
T Consensus       346 d~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        346 DVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             hhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98862       234566788888999999999999999987

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.87  E-value=1.1e-07  Score=85.25  Aligned_cols=142  Identities=30%  Similarity=0.488  Sum_probs=116.5

Q ss_pred             HHHHHhhhhhhchhhhHHHHHHhhcccc--cccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHH
Q 015396           48 IIVLCTALPISSLFPFLYFMIKDFQIAK--REEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIF  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~  125 (407)
                      ...+..........+..+.+..+++.+.  ..      .++..+.+.++..++.++.|.++||+|||+.+..+.....++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~   82 (338)
T COG0477           9 LAALLLGLDLGLLSPALPLLLSTLSLSSGRLL------YGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLG   82 (338)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHcCCCchhHH------HHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHH
Confidence            3344444666777778888888877766  35      899999999999999999999999999998888887765666


Q ss_pred             HHHhhccch--HHHHHHHHHHHhhhccchhHH-HHHHhhhccc-cchhhhhHHHHH-HHHHHHHHHHHhhhhhcC
Q 015396          126 NTLFGLSVN--FWMAVLTRFLLGSLNGLLGPI-KAYACEIFRE-EHQALGLSTVST-AWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       126 ~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~  195 (407)
                      .+...+..+  .+.+++.|+..|++.+...+. .+++.|+.|+ ++|+...+.... ...+|..++|.+++.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (338)
T COG0477          83 TLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG  157 (338)
T ss_pred             HHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666655  899999999999998887775 9999999998 688999998877 688899999988888876

>TIGR00788 fbt folate/biopterin transporter

Probab=98.84  E-value=1.8e-08  Score=96.22  Aligned_cols=122  Identities=7%  Similarity=-0.037  Sum_probs=104.1

Q ss_pred             HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc----------chHHHH
Q 015396           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMA  138 (407)
Q Consensus        69 ~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l  138 (407)
                      +.+|.++.+      .|.+.....++..++....+++.+|++.|+++.++.++.+++.+.....          ++.+.+
T Consensus       281 ~~lG~s~~~------~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~  354 (468)
T TIGR00788       281 QCLPGGPSF------SGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFV  354 (468)
T ss_pred             ccCCCCcch------hhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeee
Confidence            568999999      9999999999999999999999999999999999999999887554321          333445


Q ss_pred             HHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCC
Q 015396          139 VLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (407)
Q Consensus       139 ~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (407)
                      ...-++.+++.+.... ...++.+..|++++++..++.....++|..+++.+++.+.+.
T Consensus       355 ~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~  413 (468)
T TIGR00788       355 LGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMET  413 (468)
T ss_pred             eehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556788887777554 599999999999999999999999999999999999999983

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.83  E-value=1.7e-06  Score=81.26  Aligned_cols=296  Identities=8%  Similarity=0.108  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccc-----cccchhhHHHHHHHHHHHHHHHh-hhhhhhcccccCChHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAK-----REEDIGSYAGYVGSSFMFGRALT-SVFWGLVADRYGRKPV  114 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----~~~~~~~~~g~~~~~~~~~~~~~-~~~~G~l~dr~Grr~~  114 (407)
                      +.++.+.+..|+..+.++.+    -++.+.+.++.     +.      ..++-+...+...+. .++.+++++|++|+++
T Consensus         7 ~k~~~~~l~fF~il~~Y~iL----R~lKD~lvv~~~~~gae~------i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~l   76 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTIL----RDTKDTLVVTAKGSGAEI------IPFLKTWVVVPMAVIFMLIYTKLSNILSKEAL   76 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HhhhhheeecccCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHh
Confidence            45555666666666665444    45666666632     34      777777776666666 8999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcc-----c--------------------------hHHHHHHHHHHHhhhccchhH-H-HHHHhh
Q 015396          115 IIMGTASVVIFNTLFGLS-----V--------------------------NFWMAVLTRFLLGSLNGLLGP-I-KAYACE  161 (407)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~-----~--------------------------~~~~l~~~r~l~G~~~g~~~~-~-~~~~~~  161 (407)
                      +-.....+.....++++.     +                          +.|...+..+...+....... . ..+..|
T Consensus        77 f~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand  156 (472)
T TIGR00769        77 FYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ  156 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            887776666665555443     1                          123333333444444444333 4 889999


Q ss_pred             hccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCC--h--hHHHHHHHHHHHHHHHHhccc
Q 015396          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPY--F--LPCLCISLFAFGVTIAAFWLP  237 (407)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~  237 (407)
                      .+..++-.|..+++..+.++|..+++.+..++.+.....+..        ...|  .  ....+.++..++.+.+..++.
T Consensus       157 i~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~  228 (472)
T TIGR00769       157 ITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPG--------VDGWHVSLKNLMVIVICSGLAIILLYWWVN  228 (472)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--------cChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988887421111000        1112  1  122333333333334444443


Q ss_pred             cCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCc
Q 015396          238 ETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGG  317 (407)
Q Consensus       238 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (407)
                      +.....+...+.++         .++.++.+.......+.++++|.++...+...++...........-....+.+... 
T Consensus       229 ~~~~~~~~~~~~~~---------~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~-  298 (472)
T TIGR00769       229 RNVLTDPRSYNPAL---------KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSP-  298 (472)
T ss_pred             hcccCCccccchhh---------ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-
Confidence            22211110000000         00000011112345567889998888776666655443333322222221110000 


Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHH
Q 015396          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIP  366 (407)
Q Consensus       318 ~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  366 (407)
                      ... .+-.|.+....++..++.+. +.+++.+|+|-+....+.-++..+
T Consensus       299 ~~~-~~f~g~~~~~~gi~tl~~~l-~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       299 NEY-SAFMGDFSTWTGVVSVTMML-LSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHH
Confidence            011 22244556666777767665 448999999977666655444433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.79  E-value=9.3e-08  Score=90.16  Aligned_cols=180  Identities=14%  Similarity=0.221  Sum_probs=120.4

Q ss_pred             CCCchHHHH------HHHHHHHHhhhhhhchhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc
Q 015396           36 SGLPITELF------SIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR  108 (407)
Q Consensus        36 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr  108 (407)
                      .+.||+.++      .+++..+........+....|.+ .+.+|.+..+      .|++.++..+...+..+++|.++||
T Consensus       247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~------~G~~salP~l~~~~~k~~~g~lsD~  320 (466)
T KOG2532|consen  247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRE------TGFLSALPFLAMAIVKFVAGQLSDR  320 (466)
T ss_pred             CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhh------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666654      57778888888888889999955 5568999999      9999999999999999999999998


Q ss_pred             cCCh--------HH-HHHHHHHHHHHHHHhhccch--H-HHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHH
Q 015396          109 YGRK--------PV-IIMGTASVVIFNTLFGLSVN--F-WMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV  175 (407)
Q Consensus       109 ~Grr--------~~-~~~~~~~~~~~~~~~~~~~~--~-~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~  175 (407)
                      .-+|        |. =.++....+++.+..++.++  . ..++..-+..++. |..... +.-..|. -+++-+..+|+.
T Consensus       321 l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~-g~~~~Gf~~~~~~~-apq~a~~l~g~~  398 (466)
T KOG2532|consen  321 LTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLS-GFNISGFYKNHQDI-APQHAGFVMGII  398 (466)
T ss_pred             HhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHc-ccchhhhHhhhhhc-cchHHHHHHHHH
Confidence            8552        22 23344555555555555542  2 1222221222222 222222 3333333 457889999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhcc
Q 015396          176 STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (407)
Q Consensus       176 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (407)
                      +....+...++|.+.+.+... +   .         +..|+..|++.++..++.-+...+.
T Consensus       399 ~~~~~~~~~~~P~~vg~~~~~-~---t---------~~eW~~VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  399 NFVGALAGFIAPLLVGIIVTD-N---T---------REEWRIVFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHheeeEeCC-C---C---------HHHHHHHHHHHHHHHHHhchheeEe
Confidence            999999999999999999951 1   1         3345666688777766655444333

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.76  E-value=2.3e-08  Score=92.15  Aligned_cols=142  Identities=21%  Similarity=0.322  Sum_probs=120.3

Q ss_pred             HHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHH
Q 015396           48 IIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNT  127 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~  127 (407)
                      +...+.+.+...+...+--..++.+..+.-      .|........+-++.-++.+++.+|+|+-+++..++.+..+=.+
T Consensus       378 ~~av~mG~g~~lv~tFLfWHled~~~~~~L------fGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~  451 (618)
T KOG3762|consen  378 FVAVVMGAGVGLVFTFLFWHLEDLGGIKTL------FGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFL  451 (618)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCccee------eeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHH
Confidence            334444455555555555556788766666      77777777777788888999999999999999999999999999


Q ss_pred             HhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHH-HHHHHHHHHHHHHhhhhhcC
Q 015396          128 LFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       128 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ..+..+|+|..+-..+++|+..+....+ .+|+++..||+-|..+.++. ....++|-.+|.++||.+.+
T Consensus       452 ~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~  521 (618)
T KOG3762|consen  452 YYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE  521 (618)
T ss_pred             HHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence            9999999999999999999998887775 99999999999999999998 66788999999999999998

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.74  E-value=5.7e-07  Score=79.39  Aligned_cols=148  Identities=17%  Similarity=0.128  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc-CChHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTAS  121 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~~~~~~~~  121 (407)
                      .+.+.+..-+..+..+....++|.+..|-|+|..+      .|++.+...+.....++....+.+|. ++|+.......+
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~------aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~  283 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAE------AGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL  283 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHH------hhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            44556666677788888899999999999999999      99999999999999999999999965 466677777777


Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhcc-ccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015396          122 VVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-EEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       122 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      ..++...+.+.+.-..+.- -++.|++.|...+. ..++.+..+ +++-++..++.+....+=...||.+.|++.|..
T Consensus       284 ~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~  360 (395)
T COG2807         284 MLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT  360 (395)
T ss_pred             HHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc
Confidence            7777766666543322222 38999998887775 888888776 445556666667776777778999999999853

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.74  E-value=5.1e-07  Score=84.56  Aligned_cols=127  Identities=14%  Similarity=0.070  Sum_probs=92.3

Q ss_pred             hhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH-HHHHHHHHHhhc--cchHHH
Q 015396           62 PFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT-ASVVIFNTLFGL--SVNFWM  137 (407)
Q Consensus        62 ~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~-~~~~~~~~~~~~--~~~~~~  137 (407)
                      ...+.+. +.+|.++.+      .+++.....++..+++++.+++.||++++....... +...+.......  ..+.+.
T Consensus       228 ~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (394)
T PRK11652        228 ACSGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWT  301 (394)
T ss_pred             HhChHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            3344444 448888887      899888888999999999999999998433332222 222222222221  345677


Q ss_pred             HHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       138 l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +.+..++.|++.+...+. .++..|.+| ++++...++.+....+|..+++.+++.+.+
T Consensus       302 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        302 LLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            777888899988887775 888888887 578999999999999999999999998875

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.74  E-value=2.9e-08  Score=91.95  Aligned_cols=120  Identities=18%  Similarity=0.148  Sum_probs=85.1

Q ss_pred             hhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhc--c
Q 015396           56 PISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGL--S  132 (407)
Q Consensus        56 ~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~  132 (407)
                      .........|.+. +.+|.++.+      .++..+...++..++.++.|+++||+|||+.+..+......+..+..+  .
T Consensus       240 ~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~  313 (366)
T TIGR00886       240 SFLGVSSIFAMFFKDQFGLSKVT------AGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV  313 (366)
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC
Confidence            3344455566554 567988888      898899999999999999999999999998887776666555544433  2


Q ss_pred             c--hHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHH
Q 015396          133 V--NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIG  182 (407)
Q Consensus       133 ~--~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g  182 (407)
                      .  +.+.+.+...+.++..|.... ..+++.|..| +++|.++|+.+...++|
T Consensus       314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       314 SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             CcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            2  555555555555555555444 3677778776 69999999987776654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.72  E-value=2.5e-07  Score=86.91  Aligned_cols=142  Identities=12%  Similarity=-0.039  Sum_probs=97.5

Q ss_pred             HHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHH
Q 015396           47 WIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFN  126 (407)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~  126 (407)
                      .+..++...........++.+.++.+...++..    .+...+.+..+..++.++.|++.||+++|+++.++.++..+.+
T Consensus       238 ~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~----a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~  313 (410)
T TIGR00885       238 VIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGF----AANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALC  313 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence            333444333333445666666665433322211    4445666667778999999999999999999999998888888


Q ss_pred             HHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          127 TLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       127 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ++....++... ...-++.|++.+...|. .+...+..+++.+....++..  ..+|+++.|++.|++.|
T Consensus       314 ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~--~~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       314 LGSIFAGGHVG-LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM--AIIGGGIVPPLQGFIID  380 (410)
T ss_pred             HHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH--HHhccchHHHHHHHHHH
Confidence            88887776544 45556777776665575 899999888665433333333  33999999999999998

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.71  E-value=2.8e-08  Score=89.91  Aligned_cols=192  Identities=14%  Similarity=0.034  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchh--hHHHHHHHHH-HHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIG--SYAGYVGSSF-MFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~g~~~~~~-~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      .++..+...|+.-...+........+.+..|..+.+.+..  ........+. ..+++.+-.+...+.|++|||+..+.+
T Consensus       305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~G  384 (538)
T KOG0252|consen  305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMG  384 (538)
T ss_pred             HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhh
Confidence            3444556666666677777778888888888877663321  1122222222 233444777889999999999999999


Q ss_pred             HHHHHHHHHHhhccch----HHHHHHHHHHHhhh--ccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 015396          119 TASVVIFNTLFGLSVN----FWMAVLTRFLLGSL--NGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~--~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (407)
                      .++..+..+..+...|    -..+++...+..+.  .|.......+-+|.+|.+.|+...|+.....-.|.++|...-.+
T Consensus       385 F~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~  464 (538)
T KOG0252|consen  385 FFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLY  464 (538)
T ss_pred             HHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhH
Confidence            9999999998888766    12233333333332  23334446678999999999999999999999999999988888


Q ss_pred             hcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCC
Q 015396          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN  244 (407)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  244 (407)
                      +.++.  ++.         ..+.+..+++.+...++..+..+++||+..+..
T Consensus       465 ~t~~~--yp~---------~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~~~l  505 (538)
T KOG0252|consen  465 LTDHN--YPP---------NIGVRNVFIILAGCMLLGILFTLLIPETKGKSL  505 (538)
T ss_pred             hhhcc--CCc---------cccchHHHHHHHHHHHHhHheeEEeecccccCH
Confidence            87632  222         334555558888888888888888998876543

>PRK11462 putative transporter; Provisional

Probab=98.69  E-value=6.6e-07  Score=85.40  Aligned_cols=112  Identities=14%  Similarity=0.186  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHhhhccchhHH-HHHHh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYAC  160 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~~~  160 (407)
                      .+.+.+.+.++.+++.+++++++||+|+|+++..+..+..+..++..+.  .+.+.+++.-++.|++.+...+. .++++
T Consensus       265 ~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~a  344 (460)
T PRK11462        265 FVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMS  344 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667778888889999999999999999998776555444433333222  22334445556677776665554 77777


Q ss_pred             hhcc-------ccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          161 EIFR-------EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       161 ~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      |..+       +++.|..++......-+|..+++.++|.+.+
T Consensus       345 d~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        345 DTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             HhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7766       3333555677778899999999999999886

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.69  E-value=7.4e-07  Score=85.37  Aligned_cols=150  Identities=13%  Similarity=0.092  Sum_probs=107.7

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhh----hcccc-cCChHHH--
Q 015396           44 FSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG----LVADR-YGRKPVI--  115 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G----~l~dr-~Grr~~~--  115 (407)
                      ..+++..++....+.-....++.+.++ .+.+..  ......+++.+...+.-.+.+++..    ++.|| .+.+...  
T Consensus       275 l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~--~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~  352 (475)
T TIGR00924       275 IVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML--GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF  352 (475)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence            334444445455555555556655443 333211  1112267888888888888888755    44554 3334433  


Q ss_pred             HHHHHHHHHHHHHhhc---------cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHH
Q 015396          116 IMGTASVVIFNTLFGL---------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLII  185 (407)
Q Consensus       116 ~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  185 (407)
                      .++.++.+++....++         ..|+|+++...++.|+|.....|. .+++.+..|++.||+.+|++.....+|..+
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l  432 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL  432 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888777766653         468999999999999999998886 999999999999999999999999999999


Q ss_pred             HHHhhhhhcC
Q 015396          186 GPALGGFLAQ  195 (407)
Q Consensus       186 ~~~~~~~l~~  195 (407)
                      ++.+.....+
T Consensus       433 ~~~~~~~~~~  442 (475)
T TIGR00924       433 GGYLATFGAV  442 (475)
T ss_pred             HHHHHHHHhc
Confidence            9999887765

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=8.1e-08  Score=85.47  Aligned_cols=160  Identities=18%  Similarity=0.192  Sum_probs=118.4

Q ss_pred             HHHHhhhhhhchhhhHHH-HHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccC--ChHHHHHHHHHHHHH
Q 015396           49 IVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIF  125 (407)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G--rr~~~~~~~~~~~~~  125 (407)
                      .....+....+.-|.++. +.|.+..+.-+      .|+..--..+.+.++..+.|.++||++  |-.....+++..++.
T Consensus       278 ai~~~n~~lafLePtlslwm~e~m~~p~w~------~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~  351 (464)
T KOG3764|consen  278 AITFSNSSLAFLEPTLSLWMLETMFTPGWE------VGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVS  351 (464)
T ss_pred             chhhccchHHHhCcccHHHHHHhccCCCcc------eeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence            333445566677788885 55666744446      788777788899999999999999999  544455567777777


Q ss_pred             HHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhcc---cc---chhhhhHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 015396          126 NTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR---EE---HQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (407)
Q Consensus       126 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~---~~---~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (407)
                      +....+++++.++++-++..|++.+..... ...+.+..+   .+   .-|...++...++++|.++||.++|.+.+   
T Consensus       352 ~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~---  428 (464)
T KOG3764|consen  352 SGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVE---  428 (464)
T ss_pred             hchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhee---
Confidence            778888999999999998888876664443 333444433   33   45788899999999999999999999998   


Q ss_pred             CCCCcccccccccCCCChhHHHHHHHHHHHHH
Q 015396          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVT  230 (407)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~  230 (407)
                                   ++++.+...+.++..++-.
T Consensus       429 -------------~iGF~wl~~iig~~n~iya  447 (464)
T KOG3764|consen  429 -------------AIGFEWLMTIIGILNLIYA  447 (464)
T ss_pred             -------------ehhHHHHHHHHHHHHHHHH
Confidence                         6667766666666665533

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.65  E-value=7.2e-07  Score=82.76  Aligned_cols=147  Identities=12%  Similarity=0.212  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      +..+++..++.....+.......++.+. +|.++..      ..+.......+.+++.+++.++++|+|+|+++.++.++
T Consensus       238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~------~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~  311 (467)
T COG2211         238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELF------AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLL  311 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHH
Confidence            3344445666666666666666655432 3444444      66777777777778899999999999999999999999


Q ss_pred             HHHHHHHhhccc--hHHHHHHHHHHHhhhccchhHH-HHHHhhhcc-------ccchhhhhHHHHHHHHHHHHHHHHhhh
Q 015396          122 VVIFNTLFGLSV--NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR-------EEHQALGLSTVSTAWGIGLIIGPALGG  191 (407)
Q Consensus       122 ~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (407)
                      ..++.++.-+.+  +.+.+++..++.+++.+...+. .++++|..+       .+.-|...+......=+|.+++..+.|
T Consensus       312 ~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g  391 (467)
T COG2211         312 LAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG  391 (467)
T ss_pred             HHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999988877754  7888888889999998887775 888888765       233466677778888889999998888


Q ss_pred             hhcC
Q 015396          192 FLAQ  195 (407)
Q Consensus       192 ~l~~  195 (407)
                      +..+
T Consensus       392 ~~L~  395 (467)
T COG2211         392 WILG  395 (467)
T ss_pred             HHHH
Confidence            8886

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.63  E-value=1.1e-07  Score=65.87  Aligned_cols=80  Identities=16%  Similarity=0.278  Sum_probs=74.3

Q ss_pred             hhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc
Q 015396           53 TALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS  132 (407)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~  132 (407)
                      .++++..+.|.+|.+.+|.++|.++      .|++.+...+|+.+|.+...++.++..+++.+..+.+...+..+.+++.
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQ------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888999999999999999999      9999999999999999999999999888999999999999999999999


Q ss_pred             chHHHH
Q 015396          133 VNFWMA  138 (407)
Q Consensus       133 ~~~~~l  138 (407)
                      ++++.+
T Consensus        78 ~~~~~w   83 (85)
T PF06779_consen   78 HSFWLW   83 (85)
T ss_pred             hchHHH
Confidence            887765

Note that many members are hypothetical proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.59  E-value=3.4e-10  Score=108.04  Aligned_cols=165  Identities=18%  Similarity=0.234  Sum_probs=102.5

Q ss_pred             hhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhh--c--
Q 015396           56 PISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG--L--  131 (407)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--  131 (407)
                      +........+.+.+..+.++.. .    ...+   ..+...++.+....+.||+|||+.++.+.++.+++.+..+  .  
T Consensus       268 g~~~~~~~~~~i~~~~~~~~~~-~----~~~~---~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~  339 (451)
T PF00083_consen  268 GINFIFYYSPSIFENAGISNSF-L----ATLI---LGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFL  339 (451)
T ss_pred             cccccccccccccccccccccc-c----cccc---ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344445556777777776652 0    2222   2234456677777999999999999999888888777664  1  


Q ss_pred             -cch-----HHHHHHHHHH-HhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcc
Q 015396          132 -SVN-----FWMAVLTRFL-LGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLF  204 (407)
Q Consensus       132 -~~~-----~~~l~~~r~l-~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  204 (407)
                       .++     ...+...... .+.+.+.......+..|.+|.+.|+++.++......++..++|.+...+.+.       .
T Consensus       340 ~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~-------~  412 (451)
T PF00083_consen  340 GVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN-------L  412 (451)
T ss_pred             ccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc-------c
Confidence             121     1122211111 1222233323378889999999999999999888888988888887777762       1


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCC
Q 015396          205 SSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH  243 (407)
Q Consensus       205 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  243 (407)
                      +        .+.......++..+..++..+++||++.+.
T Consensus       413 ~--------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~  443 (451)
T PF00083_consen  413 G--------GWGVFLIFAGVCLIAIIFVYFFLPETKGKT  443 (451)
T ss_pred             c--------ccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence            1        011112333334444556678899987654

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.59  E-value=1.9e-06  Score=77.82  Aligned_cols=143  Identities=20%  Similarity=0.191  Sum_probs=117.9

Q ss_pred             HHHHHhhhhhhchhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccc-ccCChHHHHHHHHHHHHH
Q 015396           48 IIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-RYGRKPVIIMGTASVVIF  125 (407)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~d-r~Grr~~~~~~~~~~~~~  125 (407)
                      ...++..+..++.-+++.+| .+-||.+..+      ...++.....|..++....|++.. |.++|+.-.+++....++
T Consensus       215 ~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~e------TT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~  288 (403)
T PF03209_consen  215 VFLFLGTLAFFMQDVILEPYGGEVFGMSVGE------TTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALA  288 (403)
T ss_pred             HHHHHHHHHHHhhHHHcCCchhHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence            34444455555666677444 5779999999      889999999999999999998877 778888887888777776


Q ss_pred             HHHh---hccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCC
Q 015396          126 NTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQP  196 (407)
Q Consensus       126 ~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  196 (407)
                      ..+.   +...+.+.+...-++.|++.|.+.+. .+...|..++++.|..+|.+.....++..++..++|.+.|.
T Consensus       289 f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~  363 (403)
T PF03209_consen  289 FALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL  363 (403)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6554   34567899999999999999999886 89999999999999999999999999999999999998873

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.57  E-value=5.5e-06  Score=76.98  Aligned_cols=261  Identities=14%  Similarity=0.081  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc
Q 015396           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (407)
Q Consensus        88 ~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~  166 (407)
                      +++......+++++.+.+.|+.|.|..+.++..+.....+.+.+ .|-+.++++-.+.|+|.+..... -.+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            66777778899999999999999999999999999887776654 55677888899999999998886 88999999999


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCC-CCcccc-cccccCCCChhHH---HHHHHH---HHHHHHHHhcccc
Q 015396          167 HQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKY-PNLFSS-ESLFGKFPYFLPC---LCISLF---AFGVTIAAFWLPE  238 (407)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~~gw-~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~e  238 (407)
                      .+.+..++.......+.++|..+...+....... ....+- +..+ ... ...+   .+.+++   ..+..+...++|.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~~~~v~~~~~~l~~i~~~~~p~  212 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVF-EVL-FIDFEIKVLFGVLLAISVLSIINFDFLPS  212 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhc-chh-hhhHHHHHHHHHHHHHHHHHhhheeecCc
Confidence            9999999988888888888866655554322111 001111 1111 000 0001   111111   1111111222332


Q ss_pred             CCCCCCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCcc
Q 015396          239 TLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL  318 (407)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (407)
                      .......+..+                +...+..+...++++++++..+...++...+...-+...+|..+....   ..
T Consensus       213 ~~~~~~~~~~~----------------~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~---~~  273 (461)
T KOG3098|consen  213 KDVVNCKSSSE----------------TSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTR---KL  273 (461)
T ss_pred             cchhhhhhhcc----------------ccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhh---hc
Confidence            11111000000                000111224456677888877777666665555555555554443321   12


Q ss_pred             cc-chhhHHHHHHHHHHHHHHHHHhHHHHHHHH---hchhHHHHHHHHHHHHHHhhh
Q 015396          319 NY-STQMVGEVLAITGFSLLVFQLSLYPFLERI---LGPIMVARIAGVLTIPLLTSY  371 (407)
Q Consensus       319 g~-s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~  371 (407)
                      +. +....+......+++.++++. ..+.+.||   +|+++.+.++..+..+.+++.
T Consensus       274 ~~n~~~~~ai~~~~~g~g~v~~g~-~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li  329 (461)
T KOG3098|consen  274 GSNTTYLIAIYSIGIGLGEVIGGL-DFSILSKRIRGFGRKPTVLIGIIIHLIGFLLI  329 (461)
T ss_pred             cCcchhHHHHHHHHHhHHHHHHHH-HHHHHhhhhhhcccCcchhHHHHHHHHHHHHH
Confidence            22 222344455556666666654 44555544   677777777776665555543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.55  E-value=8.9e-07  Score=79.35  Aligned_cols=146  Identities=17%  Similarity=0.145  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      +++..-.++.|+..........+++.+.++ .|.++.+      .....+.+..+..+|.+..-++..|+...|.+.+..
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~------aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a  309 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQ------AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYA  309 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            344445555666555666777788877776 7888888      889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          120 ASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ++..+.++..+++++.+.+.. -++.|+..+...|. .+...+..| ++ ....+..-.+..+|+++-|.+.|++.|
T Consensus       310 ~~~ill~~~~~l~~g~v~~~~-l~~ig~F~simfPTIfslal~~l~-~~-ts~~s~~l~maivGGAiiP~l~G~i~d  383 (422)
T COG0738         310 LIAILLLLAVALIGGVVALYA-LFLIGLFNSIMFPTIFSLALKNLG-EH-TSVGSGLLVMAIVGGAIIPPLQGVIAD  383 (422)
T ss_pred             HHHHHHHHHHHHhcChHHHHH-HHHHHHHhHHHHHHHHHHHHhccC-cc-ccccceeeeeheecchHHHHHHHHHHH
Confidence            999988888889888666544 46778888887775 999999998 33 334455555677899999999999999

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.54  E-value=1.9e-06  Score=81.12  Aligned_cols=146  Identities=8%  Similarity=-0.004  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      ++...+..++............|.+. +.+|.+..+      .++.......+..+++.+.+.+.+|.++++.+.....+
T Consensus       220 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~------~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~  293 (413)
T PRK15403        220 FLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQ------FAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPI  293 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence            33333333444444444555567555 456899888      89988878888888888888876554444443222222


Q ss_pred             HHHHHHHhh-----ccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          122 VVIFNTLFG-----LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       122 ~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ..++..+..     ..++++..++..++.+++.+...+. .. .+..-.+..+|++.++.+.....+..+++..++++.+
T Consensus       294 ~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~-~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~  372 (413)
T PRK15403        294 QLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFR-FTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWF  372 (413)
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHH-HHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222221     2334444567778888887776664 43 2222223357999999998888889999999998875

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.51  E-value=8.1e-06  Score=77.25  Aligned_cols=186  Identities=16%  Similarity=0.040  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHHH--hhcccccccch---h-hHHHHHHHHHHHHHHHhhhhhhhcccccCC-hHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMIK--DFQIAKREEDI---G-SYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPV  114 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~~~---~-~~~g~~~~~~~~~~~~~~~~~G~l~dr~Gr-r~~  114 (407)
                      .+..+++..++..++...+..+.+++..  -|+-++.+.+.   + ..-.+....+.+...+.+++.-++.+|+|+ |++
T Consensus       259 ~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~  338 (477)
T TIGR01301       259 PVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRL  338 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            3456778888888877777666665543  34443322110   0 112344445555556777888889999995 777


Q ss_pred             HHHHHHHHHHHHHHhhccch---------------------HHHHHHHHHHHhhhccchhHH-HHHHhhhcccc--chhh
Q 015396          115 IIMGTASVVIFNTLFGLSVN---------------------FWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE--HQAL  170 (407)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~--~r~~  170 (407)
                      ..++.++.+++.+...+.++                     .+..++...+.|+..+..... ++++++..+++  +.|.
T Consensus       339 ~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~  418 (477)
T TIGR01301       339 WGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGL  418 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcc
Confidence            78998888888777765432                     367777888999987776665 99999999954  5599


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCC
Q 015396          171 GLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLH  241 (407)
Q Consensus       171 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~  241 (407)
                      .+|+.+.+..+.+.+..+..|.+.+       .+|-+       -...+.+.++..++.. ...+.+|+.++
T Consensus       419 ~mgilN~~I~lpQii~sl~~g~~~~-------~~g~~-------~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       419 SMGVLNLAIVIPQIIVSLGSGPWDQ-------LFGGG-------NLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHH-------HcCCC-------CeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            9999999999999999988888655       33222       1223456666665544 44566776543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.49  E-value=2.9e-06  Score=81.85  Aligned_cols=109  Identities=8%  Similarity=-0.035  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHhhhhh----hhcccccCChHHHHHHHHHHHHHHHHhhccch---------HHHHHHHHHHHhhhcc
Q 015396           84 AGYVGSSFMFGRALTSVFW----GLVADRYGRKPVIIMGTASVVIFNTLFGLSVN---------FWMAVLTRFLLGSLNG  150 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~----G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~g  150 (407)
                      .+++.++..+...+..++.    +++.||++.++.+.++.++.+++.+..+.+.+         .++++..+++.|++++
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~  397 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL  397 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence            5677777776666666655    77777777778889999999999888766544         5688899999999999


Q ss_pred             chhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 015396          151 LLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (407)
Q Consensus       151 ~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (407)
                      ...|. .+++.+..|++.||+.+|.+.....+|..++..+.+.
T Consensus       398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~  440 (500)
T PRK09584        398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANL  440 (500)
T ss_pred             HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99886 9999999999999999999888877777777666653

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.47  E-value=5e-07  Score=62.25  Aligned_cols=70  Identities=23%  Similarity=0.529  Sum_probs=61.5

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      +-...++.+...+.+.|.+|.+.++.|.++.+      +|.+.++..+...++.+++|.++||+++++.++....+
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~------iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQ------IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            44556777778888999999999999999999      99999999999999999999999999998887765544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.43  E-value=7.2e-06  Score=64.93  Aligned_cols=106  Identities=20%  Similarity=0.184  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc
Q 015396           88 GSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE  166 (407)
Q Consensus        88 ~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~  166 (407)
                      .++......+.+++.+.+.+++|.|+.++++.++..+-.... +-++.+.++.+-.+.|++.+...+. ..++.+..+++
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~  121 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEE  121 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHH
Confidence            444555567888889999999999999999999888665554 4567788999999999999998887 88999999999


Q ss_pred             chhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          167 HQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       167 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      +|++-.++.......+.++|.++.-++.
T Consensus       122 ~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  122 TIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998888888888887766554

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.42  E-value=5.8e-05  Score=69.12  Aligned_cols=106  Identities=18%  Similarity=0.099  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~  162 (407)
                      .+.+.-+-.+...+..+.+.++.+|+..+.=...+.++..++.++.+++++.+.=+++-.+.+++.|..-.. ..+ +..
T Consensus        61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~  139 (402)
T PF02487_consen   61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THF  139 (402)
T ss_pred             chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHh
Confidence            455666666777888888999999998766666777788889999999999998888888888887776665 444 445


Q ss_pred             ccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          163 FREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       163 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      +++    ...+-+..+.+.++++|+..-..+.
T Consensus       140 y~~----~~l~~wssGTG~aGl~Ga~~y~~lT  167 (402)
T PF02487_consen  140 YGK----SSLSAWSSGTGGAGLVGALYYLGLT  167 (402)
T ss_pred             cCc----cccccccCCcChhhHHHHHHHHHHH
Confidence            554    3567778888888888876655554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.41  E-value=6.4e-06  Score=79.94  Aligned_cols=179  Identities=14%  Similarity=0.161  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASV  122 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~  122 (407)
                      ...+.+..+....+.+....+.+.+.+..|.+...       .+...+..+...++..+...+.||+|||+.++.+....
T Consensus       297 ~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m  369 (513)
T KOG0254|consen  297 IIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGM  369 (513)
T ss_pred             HHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHH
Confidence            33455566666667788888888888888776542       23333444455666777799999999999999999999


Q ss_pred             HHHHHHhhccch-------------HHHHHHHH-HHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHH
Q 015396          123 VIFNTLFGLSVN-------------FWMAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (407)
Q Consensus       123 ~~~~~~~~~~~~-------------~~~l~~~r-~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  188 (407)
                      .++.++.+....             ...+.... ++..+..+.......+.+|.+|.+.|+++.++......+...+-..
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~  449 (513)
T KOG0254|consen  370 SICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISF  449 (513)
T ss_pred             HHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHH
Confidence            999887765311             11122222 2233333333334778999999999999998876655555544333


Q ss_pred             hhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCCC
Q 015396          189 LGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHRH  243 (407)
Q Consensus       189 ~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~  243 (407)
                      ....+.+       ..++...|        +.+.++..+... ...+++||++...
T Consensus       450 ~~~~~~~-------~~~~~~~f--------~~f~~~~~~~~~~fv~~~~pETkg~s  490 (513)
T KOG0254|consen  450 FFPFITE-------ALGIGGTF--------GYFGGICLLSLIIFVFFFVPETKGLT  490 (513)
T ss_pred             HHHHHHH-------hccccchH--------HHHHHHHHHHHHHHheEEcccCCCCc
Confidence            3333332       11111111        133333333344 4667889987654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.37  E-value=5.1e-06  Score=79.80  Aligned_cols=111  Identities=12%  Similarity=0.056  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHH-------HHHHHHHHHHHHHHh-----hc-----cchHHHHHHHHHHHh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPV-------IIMGTASVVIFNTLF-----GL-----SVNFWMAVLTRFLLG  146 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~-------~~~~~~~~~~~~~~~-----~~-----~~~~~~l~~~r~l~G  146 (407)
                      .+++.+...+...+.+++.+++.||+|+|+.       +.++.++.+++.+..     ..     ..+.|+++...++.|
T Consensus       311 ~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g  390 (489)
T PRK10207        311 PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQS  390 (489)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHH
Confidence            5677777778888899999999999999873       666766666665322     11     135788888899999


Q ss_pred             hhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      +|.+...+. .+++.+..|++.++.+++++.....+|..+|..++....
T Consensus       391 ~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~  439 (489)
T PRK10207        391 LGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTA  439 (489)
T ss_pred             HHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999998886 999999999999999999999999999999998887664

>PTZ00207 hypothetical protein; Provisional

Probab=98.28  E-value=7.2e-06  Score=79.36  Aligned_cols=184  Identities=11%  Similarity=0.068  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhh-cccccccchhhHHHH-HHHHHHHHHHHhhhhhhhccc---ccC-----
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDF-QIAKREEDIGSYAGY-VGSSFMFGRALTSVFWGLVAD---RYG-----  110 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~g~-~~~~~~~~~~~~~~~~G~l~d---r~G-----  110 (407)
                      ..++.+++..++.......+.--+.++.+.+ |.+.+++     ... +.++..++..+|.+..|.++.   |.+     
T Consensus       353 ~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~-----~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~  427 (591)
T PTZ00207        353 ARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDA-----LNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRV  427 (591)
T ss_pred             hhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCcc-----ceeeehhhhhHHHHhhHHHHHHHHHHHHhhcccccc
Confidence            3455566666665555555555567888888 6633221     122 567777777777777777661   111     


Q ss_pred             ChHH-HHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHH-H
Q 015396          111 RKPV-IIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIG-P  187 (407)
Q Consensus       111 rr~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~  187 (407)
                      .|+. +.+..+ ..++.+++++......+++.-++.|++.|...++ ...++|+|. |+-|+-..+......+|..+- -
T Consensus       428 prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~  505 (591)
T PTZ00207        428 PITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNR  505 (591)
T ss_pred             chhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHH
Confidence            1223 333344 6666666666544468999999999999998886 999999999 999999888888888888775 5


Q ss_pred             HhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHh
Q 015396          188 ALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (407)
Q Consensus       188 ~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (407)
                      .+.|.+.|.-..   ..|-..-.++..++.++++.+..++...+...
T Consensus       506 ~l~G~~Yd~ea~---k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        506 LLYGEWYTQQAD---KLGQDVCTERVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             HHHHHHHHHHHh---hCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence            677777753210   01223445578899999999888887666543

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.25  E-value=2e-05  Score=70.01  Aligned_cols=275  Identities=12%  Similarity=0.061  Sum_probs=138.9

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccc-----ccCCh
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGRK  112 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~d-----r~Grr  112 (407)
                      ...+++..+.+.+.+.+...+... .+|.+.+.-|.|.++      .+...-++.  -.-.-+.+.++.|     |+|||
T Consensus        28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~------~a~fS~ay~--P~sLKllWaPiVDs~y~k~~Grr   98 (510)
T KOG3574|consen   28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTS------QAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRR   98 (510)
T ss_pred             hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhh------hhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccc
Confidence            344667778888889999988888 999999888888887      444332221  1234568999999     99999


Q ss_pred             HHHHH-HHHHHHHHHHHhhc-----------cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHH
Q 015396          113 PVIIM-GTASVVIFNTLFGL-----------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAW  179 (407)
Q Consensus       113 ~~~~~-~~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~  179 (407)
                      |.-+. +..+.+..+...+.           .++...+....++.-+..+....+ -...-.+..+++-|.+......+.
T Consensus        99 ksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~  178 (510)
T KOG3574|consen   99 KSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQ  178 (510)
T ss_pred             cceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHH
Confidence            86543 33333333333322           233333434445555555554443 555555666777776666555555


Q ss_pred             HHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChh---HHHHHHHHHHHH-HHHHhccccCCCCCCCCcchhhhhhh
Q 015396          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFL---PCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYD  255 (407)
Q Consensus       180 ~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~  255 (407)
                      ..|.+++..+--.+....-.+....+|..   ..++-.   -..+.+...++. .+..++-+|.+.. .. ++....   
T Consensus       179 ~~GyfL~~~ifLaL~s~dF~N~y~rs~P~---~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~-~~-~e~~~~---  250 (510)
T KOG3574|consen  179 TAGYFLGNVVFLALESPDFCNTYLRSIPL---DQGFITLAGYLWFWGALFIVATTLVALLKKENDES-VD-EELELG---  250 (510)
T ss_pred             hhhHHhhcceeeEecChhhhhHHHhcCcC---ccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh-hh-hhhhcC---
Confidence            55555554332222210000000111110   011100   011222222222 2222322222211 11 100000   


Q ss_pred             hhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHH
Q 015396          256 ALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFS  335 (407)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~  335 (407)
                                  .++..+..+++++-|.++.........-....+-....+.-+.+      +|.+..+.+++.....-.
T Consensus       251 ------------i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle------~Gv~ke~Lal~~v~~~pl  312 (510)
T KOG3574|consen  251 ------------IHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLE------HGVPKEELALIAVPLVPL  312 (510)
T ss_pred             ------------HHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHH------cCCChhHheeeeeehhhH
Confidence                        01122345677777877777666666555555555555554444      788888877665443333


Q ss_pred             HHHHHHhHHHHH
Q 015396          336 LLVFQLSLYPFL  347 (407)
Q Consensus       336 ~~~~~~~~~~~l  347 (407)
                      .++....++.+.
T Consensus       313 qI~l~~~~gk~t  324 (510)
T KOG3574|consen  313 QIALPLYIGKWT  324 (510)
T ss_pred             HHhhhhhheeec
Confidence            444433344333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.15  E-value=4.2e-06  Score=79.36  Aligned_cols=139  Identities=12%  Similarity=0.044  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc----cCChHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR----YGRKPVIIM  117 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr----~Grr~~~~~  117 (407)
                      ++...+..++.....+.+..++|.+.++ .|.+..+      .+.+...+.++.+++.+.+|+++||    ..+|.....
T Consensus       275 vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~------a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~  348 (495)
T KOG2533|consen  275 VWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQ------ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIV  348 (495)
T ss_pred             HHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHH------hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3456677777888888899999988887 5588888      8899999999999999999999999    556665555


Q ss_pred             HHHHHHH-HHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccch-hhhhHHHHHHHHHHHHHHH
Q 015396          118 GTASVVI-FNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQ-ALGLSTVSTAWGIGLIIGP  187 (407)
Q Consensus       118 ~~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~  187 (407)
                      ...+..+ +.+......+.......-+....+.....++ ....++...++.| -...+....+.+.++.++|
T Consensus       349 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~  421 (495)
T KOG2533|consen  349 FLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISG  421 (495)
T ss_pred             HHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhh
Confidence            5444443 4344444433333333333333334444443 6666666655444 3344444445555544444

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.15  E-value=1.6e-05  Score=67.28  Aligned_cols=107  Identities=17%  Similarity=0.120  Sum_probs=82.3

Q ss_pred             HHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHh
Q 015396           50 VLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF  129 (407)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~  129 (407)
                      +++...+.-...|...++.+.+|....+      +|.+....+-...+...+.|-++|+-|||+.-+.-++...++|+ .
T Consensus        46 yslmmAgDWLQgPYvYyLYstYgFgkG~------IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-T  118 (454)
T KOG4332|consen   46 YSLMMAGDWLQGPYVYYLYSTYGFGKGD------IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-T  118 (454)
T ss_pred             HHHHHhhhhhcCceeeeeehhcCccCCc------cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-h
Confidence            3334445566678888888899998888      88877777777788889999999999999986666666655554 3


Q ss_pred             hccchHHHHHHHHHHHhhhccchhHH--HHHHhhhc
Q 015396          130 GLSVNFWMAVLTRFLLGSLNGLLGPI--KAYACEIF  163 (407)
Q Consensus       130 ~~~~~~~~l~~~r~l~G~~~g~~~~~--~~~~~~~~  163 (407)
                      -.++++-.++++|.+.|++.+....+  .-+++|..
T Consensus       119 KhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen  119 KHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             hcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            46788999999999999998875553  55778865

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.13  E-value=6.3e-05  Score=67.13  Aligned_cols=121  Identities=14%  Similarity=0.069  Sum_probs=108.0

Q ss_pred             HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccC--ChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Q 015396           69 KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYG--RKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLG  146 (407)
Q Consensus        69 ~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G  146 (407)
                      +.+|.++.+      .|-+.+...+...+.+....+..||..  -+-.+..++.+..-..++.+.+.....+.++..+--
T Consensus       290 ~rfg~ss~~------~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~s  363 (451)
T KOG2615|consen  290 GRFGYSSMQ------QGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKS  363 (451)
T ss_pred             CccCCChhh------heeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence            678999988      888888888888999999999999988  778888888888888888888888888988888888


Q ss_pred             hhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +..+...++ ..++....|.++||.++|+.....+++-++||+++|.+..
T Consensus       364 f~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  364 FSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            888777776 8889999999999999999999999999999999998876

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=98.10  E-value=0.0021  Score=59.72  Aligned_cols=306  Identities=12%  Similarity=0.108  Sum_probs=163.0

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHH-HHHHhhhhhhhcccccCChHHHHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIM  117 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~Grr~~~~~  117 (407)
                      .++.++.+.+..++..+.++    .+-.+.+.+.++....+.   ...+=+..-+ ++.+..++.+++.++..|.+++-.
T Consensus        25 E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~---I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~   97 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAES---ISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI   97 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchh---hHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            44555555555555555543    444567777666333111   5555555555 567788999999999999999877


Q ss_pred             HHHHHHHHHHHhhcc---------c-----------------------hHHHHHHHHHHHhhhccchhH-H-HHHHhhhc
Q 015396          118 GTASVVIFNTLFGLS---------V-----------------------NFWMAVLTRFLLGSLNGLLGP-I-KAYACEIF  163 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~---------~-----------------------~~~~l~~~r~l~G~~~g~~~~-~-~~~~~~~~  163 (407)
                      .+..+....+++++.         +                       +.|...+..++.-+-...... . .....|.+
T Consensus        98 ~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeit  177 (509)
T COG3202          98 ILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEIT  177 (509)
T ss_pred             HHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            776666666665542         1                       113333333344443333333 4 77889999


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCC
Q 015396          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRH  243 (407)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  243 (407)
                      ..+|-.|..++++.+.+++..++..+..++.......      ..-+.....+..+.+.++.+++.+....++.+.-.+.
T Consensus       178 t~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~------~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~  251 (509)
T COG3202         178 TIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDAL------ASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTD  251 (509)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence            9999999999999999999999998888887621100      0000000123333444444444444444432211111


Q ss_pred             CCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchh
Q 015396          244 NDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQ  323 (407)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~  323 (407)
                      +.-..+....        ++.+..+..-..+.+.+.++|.++...+...++..+........-.-....+..  ..--.+
T Consensus       252 ~~f~~~~~~k--------k~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~--~~~~~~  321 (509)
T COG3202         252 PLFYLRAKKK--------KKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPT--TNEYTA  321 (509)
T ss_pred             cchhHHHhcc--------cccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCC--hhHHHH
Confidence            1000000000        000000011123455667788887776666665544333332221111111000  000122


Q ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHH
Q 015396          324 MVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPL  367 (407)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  367 (407)
                      -.|-+....++...+...+.++-+.+|.|=.....+.-+...+.
T Consensus       322 f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~lit  365 (509)
T COG3202         322 FMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLIT  365 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            23445666777766666678888889888766655555444444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.09  E-value=2.8e-05  Score=73.28  Aligned_cols=124  Identities=20%  Similarity=0.281  Sum_probs=108.9

Q ss_pred             HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhh-hcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Q 015396           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWG-LVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL  144 (407)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G-~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  144 (407)
                      +....++.++.+      .+...+...+...+++++.. .+...+|-|+++..|+..-.+.....+++++.|+.+....+
T Consensus       267 yl~~~f~w~~~~------~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~  340 (463)
T KOG2816|consen  267 YLKAKFGWNKKE------FSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVV  340 (463)
T ss_pred             EEeeecCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHH
Confidence            445678999988      88888888888888888777 78888999999999999999999999999999999999988


Q ss_pred             HhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          145 LGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       145 ~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      .++.........+.++.+.+++++|++.++.....++...++|.+-+.+..
T Consensus       341 ~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  341 VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence            888765655569999999999999999999999999999999998888764

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.01  E-value=0.00031  Score=68.43  Aligned_cols=142  Identities=19%  Similarity=0.144  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHH---HHHHHHHHhhhccc-hhHHHHHHhh
Q 015396           86 YVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWM---AVLTRFLLGSLNGL-LGPIKAYACE  161 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~r~l~G~~~g~-~~~~~~~~~~  161 (407)
                      +................+...|++|||.....+.++..++++..++..+...   ..+...+..++.+. ......+.+|
T Consensus       354 ~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  433 (521)
T KOG0255|consen  354 LNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAE  433 (521)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333333345555566689999999999999999999999999888654432   34444444444444 3334889999


Q ss_pred             hccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHH-HHHHHHhccccCC
Q 015396          162 IFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAF-GVTIAAFWLPETL  240 (407)
Q Consensus       162 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~  240 (407)
                      .+|...|..+.+..+....+|.+++|.+.......               .  ......+.+.... ..++...++||+.
T Consensus       434 l~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~---------------~--~~~~~~~~~~~~~l~~~~~~~~lpet~  496 (521)
T KOG0255|consen  434 LIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQM---------------F--PLLGLILFGWLALLLGLLSLLLLPETK  496 (521)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------------c--ccchHHHHHHHHHHHHHHHHhcCcccC
Confidence            99999999999999999999999999887665431               0  0111122233333 3445558899987


Q ss_pred             CCCC
Q 015396          241 HRHN  244 (407)
Q Consensus       241 ~~~~  244 (407)
                      ....
T Consensus       497 ~~~l  500 (521)
T KOG0255|consen  497 GKPL  500 (521)
T ss_pred             CCCC
Confidence            7654

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.01  E-value=0.0011  Score=63.10  Aligned_cols=302  Identities=12%  Similarity=0.134  Sum_probs=152.7

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHH-HHHHhhhhhhhcccccCChHHHHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGRKPVIIM  117 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~Grr~~~~~  117 (407)
                      .+++++.+.+..++..+.++    .+-.+.+.+=++....+.   +..+=....+ +..+......+++||++|.+++-.
T Consensus        22 E~~k~~~l~~m~f~i~f~y~----~lR~~KD~lvvt~~gae~---I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~   94 (491)
T PF03219_consen   22 ELKKFLPLALMFFFILFNYT----ILRDLKDTLVVTAQGAEV---IPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYI   94 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHhcCeEEEecCChhH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            34556666666666555543    333444444333222110   3333332222 345567789999999999998877


Q ss_pred             HHHHHHHHHHHhhcc---------c----------------------hHHHHHHHHHHHhhhccch-hHH-HHHHhhhcc
Q 015396          118 GTASVVIFNTLFGLS---------V----------------------NFWMAVLTRFLLGSLNGLL-GPI-KAYACEIFR  164 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~---------~----------------------~~~~l~~~r~l~G~~~g~~-~~~-~~~~~~~~~  164 (407)
                      ....+.....++++.         +                      +.|...+..++.-+-+... ... ..+..|.++
T Consensus        95 ~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt  174 (491)
T PF03219_consen   95 IIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITT  174 (491)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            666665555444431         1                      1122333333333433333 334 888999999


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHHHhhhhhcC-CCCCCC-CcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCC
Q 015396          165 EEHQALGLSTVSTAWGIGLIIGPALGGFLAQ-PAEKYP-NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHR  242 (407)
Q Consensus       165 ~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~-~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  242 (407)
                      .+|-.|..+++..+.++|.+++..+..++.+ .....+ ..-.|...     ......+..+.+++.+....++.+....
T Consensus       175 ~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~-----l~~l~~~v~~~g~~i~~~~~~~~~~vl~  249 (491)
T PF03219_consen  175 VEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELS-----LNSLMGIVLILGIVIILLYRYMNKNVLT  249 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            9999999999999999999999888888776 111000 00111110     1111112222222223333333322111


Q ss_pred             CCCCcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccch
Q 015396          243 HNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYST  322 (407)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~  322 (407)
                      .+...++.+.         ++.++.+..-....+.++++|.+....+...++..........+-......+... ..++.
T Consensus       250 ~~~~~~~~~~---------~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~-~~ysa  319 (491)
T PF03219_consen  250 DPRFYPSAKK---------KKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDP-NDYSA  319 (491)
T ss_pred             ccccchhhhc---------ccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-hHHHH
Confidence            1110000000         0000001112235567788888887776666655544433333322222211110 12222


Q ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHH
Q 015396          323 QMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLT  364 (407)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  364 (407)
                       -.|-.....++..++.. ++++.+.+|+|-+....+.-+..
T Consensus       320 -fmG~~~~~tGivtii~~-~l~~~iir~~GW~~~AlitPiv~  359 (491)
T PF03219_consen  320 -FMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALITPIVI  359 (491)
T ss_pred             -HHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhHHHH
Confidence             24555666777777777 57889999999777666544333

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.00  E-value=6.3e-05  Score=72.65  Aligned_cols=195  Identities=18%  Similarity=0.157  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHH-Hhhccccc---ccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCC-hHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKR---EEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVI  115 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~---~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Gr-r~~~  115 (407)
                      |.+....+..++.++.......+.|... .-++-+..   +      .++....+.++..+++.+.|.+..+++| |..+
T Consensus       310 r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~------~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~l  383 (599)
T PF06609_consen  310 RGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITE------IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQL  383 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccce------eehhhhhHHHHHHHHHHHHHHHHHHccchhHHH
Confidence            3344444555566655555555666443 34444432   3      6778888888889999999999999888 5555


Q ss_pred             HHHHHHHHHHHHHhhc--cchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 015396          116 IMGTASVVIFNTLFGL--SVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (407)
Q Consensus       116 ~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (407)
                      +++.++..+++-+++.  .+|....+..-++.|++.|.... ......-..|+++-+.+.++....-.+|+.+|..+-.-
T Consensus       384 i~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~  463 (599)
T PF06609_consen  384 IFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNA  463 (599)
T ss_pred             HHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            6777666655444443  34555666777889998777555 46666667788999999999988888888887765533


Q ss_pred             hcCCC-C--------------CCC--------------------Cccc------------ccccccCCCChhHHHHHHHH
Q 015396          193 LAQPA-E--------------KYP--------------------NLFS------------SESLFGKFPYFLPCLCISLF  225 (407)
Q Consensus       193 l~~~~-~--------------~~~--------------------~~~g------------w~~~~~~~~~~~~~~~~~~~  225 (407)
                      +..+. .              +.+                    ..-|            -+..| ..+++.+++.....
T Consensus       464 I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aY-a~ay~~V~~~siaF  542 (599)
T PF06609_consen  464 IFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAY-AHAYRYVYYSSIAF  542 (599)
T ss_pred             HHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            22110 0              000                    0000            12334 55678888888888


Q ss_pred             HHHHHHHHhccccCCCC
Q 015396          226 AFGVTIAAFWLPETLHR  242 (407)
Q Consensus       226 ~~~~~~~~~~~~e~~~~  242 (407)
                      +++.++..++++|..+.
T Consensus       543 G~vaiiaa~fl~d~~~~  559 (599)
T PF06609_consen  543 GVVAIIAALFLGDIDKY  559 (599)
T ss_pred             HHHHHHHHHHcCChHHh
Confidence            88888888888876543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.73  E-value=0.00046  Score=65.81  Aligned_cols=111  Identities=14%  Similarity=0.057  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCC--h----HH-HHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHHhh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGR--K----PV-IIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLGS  147 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Gr--r----~~-~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~  147 (407)
                      .+|.+++..+.-++.+|+.+++-.|.+|  |    +. +.+++++.+++.+++.++         .+.+++++..++.++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            6888999999888889888887666633  2    11 566777777776555321         367889999999999


Q ss_pred             hccchhHH-HHHHhhhccccchhhhhHHHHHH-HHHHHHHHHHhhhhhc
Q 015396          148 LNGLLGPI-KAYACEIFREEHQALGLSTVSTA-WGIGLIIGPALGGFLA  194 (407)
Q Consensus       148 ~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~l~  194 (407)
                      |+-...|. .+++++..|++.|++.+|.+... ..+|..++..+++...
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~  438 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTS  438 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99998887 99999999999999999999663 4677777777766654

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.65  E-value=0.00047  Score=47.48  Aligned_cols=71  Identities=17%  Similarity=0.219  Sum_probs=57.9

Q ss_pred             HHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHH
Q 015396          286 SSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVL  363 (407)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  363 (407)
                      ..-..+++..........+++.|..+      .|+|+.++|.+.++..+..+++.. +.+.+.||.++++.......+
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~------~Gl~~~~iGil~~i~~~~~~~~~p-l~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQ------LGLSPSQIGILSAIRPLIRFLAPP-LWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhh------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCccHHHHHHHHH
Confidence            34456666777777777788888876      799999999999999999999984 899999999998887665544

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.61  E-value=0.0028  Score=59.08  Aligned_cols=285  Identities=13%  Similarity=0.110  Sum_probs=129.8

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHHHHHh--hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccc-----ccCChHHHH
Q 015396           44 FSIWIIVLCTALPISSLFPFLYFMIKD--FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD-----RYGRKPVII  116 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~d-----r~Grr~~~~  116 (407)
                      ..+.+.+++.+...+.....+|.+.++  -+.|.++      .+.+.-+ ...+ -.-++|.++.|     |+||||..+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q------~~~fSla-~~Pf-SlKlLWaPiVDs~y~~~~GRRKSWi   74 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQ------QAIFSLA-SYPF-SLKLLWAPIVDSVYSKRIGRRKSWI   74 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhH------heeeeee-echh-HHHHhhhhhhhhhcccccCCcchhh
Confidence            356677888888888777788988888  7888887      4432211 0010 12345666666     899998765


Q ss_pred             HH-HHHHHHHHHHhhccc------------------------hHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhh
Q 015396          117 MG-TASVVIFNTLFGLSV------------------------NFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQAL  170 (407)
Q Consensus       117 ~~-~~~~~~~~~~~~~~~------------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~  170 (407)
                      +- ..+.++..+..+...                        +...+....++.=+-.+.... +-...-....+++++.
T Consensus        75 iP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~  154 (544)
T PF13000_consen   75 IPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGY  154 (544)
T ss_pred             hHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcch
Confidence            42 233333333322111                        111222222222222222222 1223333345677777


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhhhcCCC--CCCCCcccccccccCCCChh---HHHHHHHHHH-HHHHHHhccccCCCCCC
Q 015396          171 GLSTVSTAWGIGLIIGPALGGFLAQPA--EKYPNLFSSESLFGKFPYFL---PCLCISLFAF-GVTIAAFWLPETLHRHN  244 (407)
Q Consensus       171 ~~~~~~~~~~~g~~~~~~~~~~l~~~~--~~~~~~~gw~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~e~~~~~~  244 (407)
                      +..-...+.++|..++..+--.+-+..  +.|     +|..-...|.-.   -..+-+...+ +...+.++-+|.+....
T Consensus       155 ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky-----~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~  229 (544)
T PF13000_consen  155 ASTCQTVGQTAGYFLSFTVFLALNSPDFCNKY-----LRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSES  229 (544)
T ss_pred             HHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHh-----cccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeeccccccc
Confidence            766666666666666554433332210  000     111100111100   0112222222 23344455555543221


Q ss_pred             CCc-ch----hhhhh-hhhhhchhh--hhhh---hcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCC
Q 015396          245 DDD-DS----CDVSY-DALESASAE--VKEE---EGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPK  313 (407)
Q Consensus       245 ~~~-~~----~~~~~-~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (407)
                      ..+ +.    ++..+ ...+..+++  ..++   .++.-+...+++|.|++..+++.....-...........+=+.+  
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE--  307 (544)
T PF13000_consen  230 LPKIEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE--  307 (544)
T ss_pred             CccccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH--
Confidence            111 00    00000 000000100  0111   11112334566778888888877777666655555544443333  


Q ss_pred             ccCccccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q 015396          314 KLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFL  347 (407)
Q Consensus       314 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l  347 (407)
                          .|++.++.+.+..+..=..++..+.++.|.
T Consensus       308 ----kG~~KE~LAl~~li~~P~qii~~~~~~Kws  337 (544)
T PF13000_consen  308 ----KGLSKEDLALLVLIDFPFQIILPYYIGKWS  337 (544)
T ss_pred             ----cCCCHHHhHHHHHHhhhHHHHHHHHhhhhh
Confidence                788888877766554444444444344443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.51  E-value=0.0032  Score=57.94  Aligned_cols=108  Identities=17%  Similarity=0.243  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH--HHHHHHH---HHhhccchHHHHHHHHHHHhhhccchhH-HHH
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT--ASVVIFN---TLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKA  157 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~--~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~  157 (407)
                      ..+....|.+|-.++.--.-.+  |+  |++.+.+.  .+..+..   ..+-+.++.|..++.-+..|+.+|...+ ...
T Consensus       283 Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~  358 (402)
T PF02487_consen  283 YRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY  358 (402)
T ss_pred             HHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            6677777887766664433222  44  33333322  2222222   2333467889999999999998787666 577


Q ss_pred             HHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          158 YACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       158 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      .+.|-.|+++|-.+++....+-++|..++.+++-.+-.
T Consensus       359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            88888899999999999999999999999888866543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.49  E-value=0.00067  Score=59.87  Aligned_cols=101  Identities=17%  Similarity=0.137  Sum_probs=85.9

Q ss_pred             HHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHHHHHHhhhccccchhhhhHH
Q 015396           95 RALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLST  174 (407)
Q Consensus        95 ~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~  174 (407)
                      +.+.-.+.=.+.|-.-.|++++.-.+.......+..+.++.+.+-+.-+..|...+.-..-++++-+..+++++.++.+.
T Consensus        55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrvt~y  134 (433)
T KOG3810|consen   55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRVTGY  134 (433)
T ss_pred             HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHHHHH
Confidence            44555666678999989999988888778888888889999999888888888876666668899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhcC
Q 015396          175 VSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       175 ~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      .....-.|-..|..++..+..
T Consensus       135 ~RaA~L~g~~~g~vlaQlLvs  155 (433)
T KOG3810|consen  135 CRAAFLVGKFVGSVLAQLLVS  155 (433)
T ss_pred             hHHHHHHHhHHHhHHHHHHhh
Confidence            999999999999999988886

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.45  E-value=0.00078  Score=62.54  Aligned_cols=107  Identities=16%  Similarity=0.228  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHhhccc---------hHHHHHHHHHHHhhhccchhHH-HHHHhhhcccc---chhhhhHHHHHHH
Q 015396          113 PVIIMGTASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREE---HQALGLSTVSTAW  179 (407)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~---~r~~~~~~~~~~~  179 (407)
                      |+++++.++..+|.++..++.         +.+.++++..+.++|.|..-|. .++.+|.++++   +|.+.+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567788888888888744321         2367888899999999999886 99999999865   4667788899999


Q ss_pred             HHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhc
Q 015396          180 GIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW  235 (407)
Q Consensus       180 ~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (407)
                      ++|..+++.+.+++.+                +++|...|.+.++..+++++....
T Consensus        82 n~G~~~~~~~~~~i~~----------------~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQ----------------NYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHH----------------CS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhcc----------------ccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999987                667777778777776666655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.23  E-value=0.00068  Score=62.11  Aligned_cols=144  Identities=17%  Similarity=0.077  Sum_probs=91.6

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCC-hHHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGR-KPVIIMGTASVVI  124 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Gr-r~~~~~~~~~~~~  124 (407)
                      +..++.+.....+.....+......-|.+...      .|++.....++..+++...|.+.||... |..++.......+
T Consensus       271 l~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~------aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v  344 (480)
T KOG2563|consen  271 LAICYGIGLGLFNSLSTLLNLALCPSGYEGVF------AGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALV  344 (480)
T ss_pred             HHHHHhhhHHHHHHHHHHhhhccccccCCccc------cchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            33333333333344444444334444666556      8999999999999999999999999876 5555555555555


Q ss_pred             HHHHh-hc---cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          125 FNTLF-GL---SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       125 ~~~~~-~~---~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +.... .+   ..+.+.++....+.|++.....|. .-+-.|..-|..-+.-.|+.+....+-+++-..+.+.+.+
T Consensus       345 ~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~  420 (480)
T KOG2563|consen  345 GTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAE  420 (480)
T ss_pred             HHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhh
Confidence            53221 11   223455666667788876666675 7777777655555666777766666666666666677665

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.23  E-value=0.00077  Score=63.76  Aligned_cols=149  Identities=15%  Similarity=0.186  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhcc----------chHHHHHHHHHHHhhhccc-h
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLS----------VNFWMAVLTRFLLGSLNGL-L  152 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G~~~g~-~  152 (407)
                      .|.+..+..++..++..+...+.-+..-|+++.++.++..+..+....-          ++.+..+.--++..+..+. .
T Consensus       257 ~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~  336 (433)
T PF03092_consen  257 YGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAF  336 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHH
Confidence            7777777888888888888888778888999988888777665543221          1222223333455554444 5


Q ss_pred             hHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccc-cccccCCCChhHHHHHHHHHHHHHH
Q 015396          153 GPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS-ESLFGKFPYFLPCLCISLFAFGVTI  231 (407)
Q Consensus       153 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw-~~~~~~~~~~~~~~~~~~~~~~~~~  231 (407)
                      .|...+++|..|+...|...++.....++|..++..++..+.+.       ++. +.-|  .+.+...++..+..++.+.
T Consensus       337 mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~-------~~vt~~~f--~~l~~lili~~~~~ll~l~  407 (433)
T PF03092_consen  337 MPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMEL-------FGVTRDDF--SNLWLLILICSVIQLLPLP  407 (433)
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCCcccc--cchHHHHHHHHHHHHHHHH
Confidence            56688999999999999999999999999999999999999873       332 1112  1122233444444455555


Q ss_pred             HHhccccCCC
Q 015396          232 AAFWLPETLH  241 (407)
Q Consensus       232 ~~~~~~e~~~  241 (407)
                      ...++|++.+
T Consensus       408 ll~lLp~~~~  417 (433)
T PF03092_consen  408 LLFLLPPQKR  417 (433)
T ss_pred             HHHHcCCCch
Confidence            5566776544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.0043  Score=57.26  Aligned_cols=114  Identities=16%  Similarity=0.175  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccC-------ChHHHHHHHHHHHHHH----HHhh-ccchHHHHHHHHHHHhhhccc
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYG-------RKPVIIMGTASVVIFN----TLFG-LSVNFWMAVLTRFLLGSLNGL  151 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~G-------rr~~~~~~~~~~~~~~----~~~~-~~~~~~~l~~~r~l~G~~~g~  151 (407)
                      .-++..+...+..+|.++.|.++||+-       |.+.=.....+.+..+    ++.. +..+...+....++.|.....
T Consensus       285 ~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~  364 (493)
T KOG1330|consen  285 TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISW  364 (493)
T ss_pred             chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            556677788888999999999999842       2222222222222211    1111 122333333444566654333


Q ss_pred             hh-HH-HHHHhhhccccchhhhhHHH-HHHHHHHHHHHHHhhhhhcCCC
Q 015396          152 LG-PI-KAYACEIFREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPA  197 (407)
Q Consensus       152 ~~-~~-~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~  197 (407)
                      .. .. .-+..|..|+++|..+.++- .....+|.+-+|.+-|.+.+..
T Consensus       365 ~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  365 FNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKL  413 (493)
T ss_pred             cccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence            22 23 66788999999999999987 4455667777777888998853

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.96  E-value=0.00041  Score=64.88  Aligned_cols=86  Identities=21%  Similarity=0.367  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH-HH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM-GT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~-~~  119 (407)
                      |.+..+=+..++.+...+.+.|.++.+.+++|+++++      .|.++..-.+..+++.|++|+++||+-+||.+++ ++
T Consensus        11 r~l~~~k~f~~~~~~~~g~l~pll~vy~kQLGl~p~~------~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl   84 (618)
T KOG3762|consen   11 RALIVAKLFYLFFGARFGSLFPLLAVYFKQLGLNPAV------VGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSL   84 (618)
T ss_pred             hhhheeeeeeeeeeecccccchHHHHHHHHcCCCHHH------hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHH
Confidence            3344444456666777888999999999999999999      9999999999999999999999999987665554 55


Q ss_pred             HHHHHHHHHhhcc
Q 015396          120 ASVVIFNTLFGLS  132 (407)
Q Consensus       120 ~~~~~~~~~~~~~  132 (407)
                      +....+.++..+.
T Consensus        85 ~~~v~a~fll~fv   97 (618)
T KOG3762|consen   85 LLSVTATFLLVFV   97 (618)
T ss_pred             HHHHHHHHheeec
Confidence            6666666666554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.83  E-value=0.017  Score=54.07  Aligned_cols=109  Identities=16%  Similarity=0.162  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCCh-------HHHHHHHHHHHHHHHHhhcc----------chHHHHHHHHHHHh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK-------PVIIMGTASVVIFNTLFGLS----------VNFWMAVLTRFLLG  146 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr-------~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~r~l~G  146 (407)
                      .++.++...+.-++.+|+..++.-+.++|       .=+-++.++.+.+.++....          .+.++++...++++
T Consensus       326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s  405 (498)
T COG3104         326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS  405 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            68899999999899998888888775544       12345555555555444332          36889999999999


Q ss_pred             hhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 015396          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (407)
Q Consensus       147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (407)
                      ++.=+..|. .+++....|++-.+..++.+......|..++..+++.
T Consensus       406 ~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~  452 (498)
T COG3104         406 FGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGL  452 (498)
T ss_pred             HHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence            999888886 9999999999999999999998888888888777774

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=96.81  E-value=0.042  Score=53.60  Aligned_cols=152  Identities=13%  Similarity=0.056  Sum_probs=106.6

Q ss_pred             CchHHHHHHHHHHHHhhhhh-hchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-cCChHHH
Q 015396           38 LPITELFSIWIIVLCTALPI-SSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKPVI  115 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~Grr~~~  115 (407)
                      ..|+....+.....+.-+.. +.....+.++.++++.+...      +.-..+.+.-......+..++++|- +||-+++
T Consensus        34 g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~------aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI  107 (571)
T KOG1237|consen   34 GGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGG------AANNVNAFGGTQFLLPLLGAFLADSFLGRYFTI  107 (571)
T ss_pred             chhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHH------HHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence            34444444444444444433 33466777888899988876      7777777777777888999999996 4898999


Q ss_pred             HHHHHHHHHHHHHhhccc-------------------------hHHHHHHHHHHHhhhccchhHH-HHHHhhhcc---cc
Q 015396          116 IMGTASVVIFNTLFGLSV-------------------------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFR---EE  166 (407)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~-------------------------~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~---~~  166 (407)
                      .++.++..++..+..++.                         ....++.+.-+..+|.|..-++ .+.-+|.++   ++
T Consensus       108 ~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~  187 (571)
T KOG1237|consen  108 NIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPV  187 (571)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcc
Confidence            988888887754443211                         1134555666667788887776 888899998   32


Q ss_pred             -ch--hhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          167 -HQ--ALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       167 -~r--~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                       .+  ...+.++....++|..++..+-.+.-+
T Consensus       188 ~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~  219 (571)
T KOG1237|consen  188 EVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD  219 (571)
T ss_pred             hhhCcccchhHHHHHHHHHHHHHHHHHHhhhh
Confidence             22  367788889999999999888888766

>PRK03612 spermidine synthase; Provisional

Probab=96.75  E-value=0.086  Score=51.09  Aligned_cols=122  Identities=16%  Similarity=0.129  Sum_probs=70.6

Q ss_pred             HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH---HH-HHhh---ccchH-HH
Q 015396           66 FMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI---FN-TLFG---LSVNF-WM  137 (407)
Q Consensus        66 ~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~---~~-~~~~---~~~~~-~~  137 (407)
                      .+..-+|-+...      .+.+.+++..|..+|+.+.|++.++.-++.. ..-..+..+   +. ++..   ..... ..
T Consensus        40 ~l~~~~G~s~~~------~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~  112 (521)
T PRK03612         40 LASYLLGDSVTQ------FSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLL  112 (521)
T ss_pred             HHHHHhCchHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444456777777      8999999999999999999988744322222 111111111   11 1111   11111 12


Q ss_pred             HHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          138 AVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       138 l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ++...++.++..|...|. ..+..+. ..++-++..|-......+|.++|.++.+++.-
T Consensus       113 ~~~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        113 LYVLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            233334556666666664 4444332 22234567788888888999999988888764

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.69  E-value=0.02  Score=53.80  Aligned_cols=88  Identities=14%  Similarity=0.116  Sum_probs=65.8

Q ss_pred             cccchhh-HHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHHhhhhhhhH---hhhh--hhHH
Q 015396          318 LNYSTQM-VGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLA---FLLN--CASV  391 (407)
Q Consensus       318 ~g~s~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~  391 (407)
                      +|++..+ .|.+.+....+..+..+ .++++.||+|.|+++..+.+...+..++.++..........   ..++  ....
T Consensus        56 lglT~~qv~G~I~s~F~ysYal~qI-p~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A  134 (511)
T TIGR00806        56 LNFTEETVTNEIIPVLPYSHLAVLV-PVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIA  134 (511)
T ss_pred             cCCCHHHhcchHHHHHHHHHHHHHH-HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999 99999999999999985 88999999999999999999988888888776554433221   1111  1113


Q ss_pred             HHHHHhhcCCCCCCC
Q 015396          392 VKNLLSSSGPGSKRS  406 (407)
Q Consensus       392 ~~~~~~~~~p~~~rs  406 (407)
                      ....+..-+|++.|+
T Consensus       135 ~~syI~~WfP~kER~  149 (511)
T TIGR00806       135 YSSYIFSLVPPSRYQ  149 (511)
T ss_pred             HHHHHHHHCCHHHHH
Confidence            345566677776653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.68  E-value=0.025  Score=52.99  Aligned_cols=138  Identities=8%  Similarity=-0.106  Sum_probs=94.9

Q ss_pred             HhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhh-
Q 015396           52 CTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG-  130 (407)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~-  130 (407)
                      +.++..-.+...+..+...-|+++..      +|..-+...+....+.+...++.+|+|..|.=+++...-.++..++. 
T Consensus       269 lLY~TVLsf~~lmt~yl~~~G~s~~~------igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~  342 (432)
T PF06963_consen  269 LLYFTVLSFGGLMTAYLKSQGYSPSV------IGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVV  342 (432)
T ss_pred             HHHHHHhcCcHHHHHHHHHCCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence            33333334456666666666999998      99999999999999999999999999998887776654443332222 


Q ss_pred             --cc---c----hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          131 --LS---V----NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       131 --~~---~----~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                        +.   +    +...++.+-.+.-+|-=.+..+ .-++.|..|+++||...|.-....++-..+-..++-.+.+
T Consensus       343 ~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~  417 (432)
T PF06963_consen  343 SFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR  417 (432)
T ss_pred             HHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence              11   1    2223333333333342234444 7788999999999999999999999888887776654443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=96.65  E-value=0.27  Score=43.59  Aligned_cols=67  Identities=16%  Similarity=0.200  Sum_probs=47.6

Q ss_pred             HHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhc
Q 015396           96 ALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF  163 (407)
Q Consensus        96 ~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~  163 (407)
                      +..+++.+.+..++|-|..+.++.......... =+-+.+..++-.-...|++.+..... -+|+++.-
T Consensus        72 ~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g  139 (390)
T KOG3097|consen   72 IDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMG  139 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecHHH
Confidence            345555568899999999998887766654322 23466788888999999998886664 55555544

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=96.64  E-value=0.0039  Score=58.63  Aligned_cols=158  Identities=10%  Similarity=0.153  Sum_probs=90.5

Q ss_pred             CCCchHHHHHHHHHHHHhhhhhhchhhhH-HHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcc-cccCChH
Q 015396           36 SGLPITELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA-DRYGRKP  113 (407)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~-dr~Grr~  113 (407)
                      .+..+...+.+....+...+.....-... +.....++.+.++  ...+.|...++..+-.....+..+... -++.+|+
T Consensus       257 ~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~--av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~  334 (488)
T KOG2325|consen  257 PKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSE--AVLYNGITLSISGILSVILLLLYIFTRLGKIDKRR  334 (488)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccch--HHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccce
Confidence            34455555555555555444443323333 3445556777665  223345555554444444444444433 3334566


Q ss_pred             HHHHHHHHHHHHHHHhhcc-------------------------------chHHHHHHHH-HHHhhhccchhH-HHHHHh
Q 015396          114 VIIMGTASVVIFNTLFGLS-------------------------------VNFWMAVLTR-FLLGSLNGLLGP-IKAYAC  160 (407)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~l~~~r-~l~G~~~g~~~~-~~~~~~  160 (407)
                      .+..+.++......+....                               .+.+.+++.+ ++.|.+.-.... ..++-+
T Consensus       335 ~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlyS  414 (488)
T KOG2325|consen  335 IILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYS  414 (488)
T ss_pred             eeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHH
Confidence            5555544443333322110                               1123334443 444555444444 488999


Q ss_pred             hhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          161 EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       161 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      |...|++++...+.++....++..+||++......
T Consensus       415 kiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~  449 (488)
T KOG2325|consen  415 KILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFT  449 (488)
T ss_pred             HHhCCccccceeEEEEeccchhhhhhHHHHhhhHH
Confidence            99999999999999999999999999999988887

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=96.38  E-value=0.46  Score=43.79  Aligned_cols=121  Identities=14%  Similarity=0.135  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHH
Q 015396           42 ELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTAS  121 (407)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~  121 (407)
                      ..+..++..+-.....+++....+++.+++-.+..+   .......+....+...+....--.+.-|. |+++.....+.
T Consensus        19 v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~   94 (406)
T KOG1479|consen   19 VYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLI   94 (406)
T ss_pred             HHHHHHHHhcccccchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            334455555555667788888888888776433332   11133333333444444444555555552 22221111111


Q ss_pred             HHHHHHHh--hc-------cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccc
Q 015396          122 VVIFNTLF--GL-------SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH  167 (407)
Q Consensus       122 ~~~~~~~~--~~-------~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~  167 (407)
                      ..+..+.+  +.       ...++..++.-.+.+++.|..... +...++ +|+|.
T Consensus        95 ~il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~y  149 (406)
T KOG1479|consen   95 AILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEY  149 (406)
T ss_pred             HHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHH
Confidence            11111111  11       123455555556677777776664 554444 55544

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.29  E-value=0.037  Score=38.58  Aligned_cols=71  Identities=21%  Similarity=0.171  Sum_probs=58.0

Q ss_pred             chhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHHh
Q 015396          299 MAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM  376 (407)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (407)
                      +.+...+|...++      .++|..+.+++-+.+.++..++.+ ...++.++.++++.+..+.+...+......+.+.
T Consensus         9 FayTplLP~M~~~------~~ls~~~ag~lasaNy~GYL~GAl-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen    9 FAYTPLLPLMQAD------GGLSLSQAGWLASANYLGYLVGAL-LASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HHHHhHhHHHHHh------cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3555567766555      799999999999999999999996 7778888888888999999998888887766654

Note that many members are hypothetical proteins.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=96.02  E-value=0.21  Score=45.11  Aligned_cols=52  Identities=12%  Similarity=0.031  Sum_probs=46.2

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhh
Q 015396          318 LNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTS  370 (407)
Q Consensus       318 ~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  370 (407)
                      +|++..+++.++........+.+. +.+.+.||+|||+..+..+++..++++.
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~-~~G~laD~~Grk~~cl~~cily~~scl~  115 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGT-FVGSLADRYGRKKACLLFCILYSLSCLT  115 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence            799999999999998888888885 7899999999999999988888888864

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.00  E-value=0.13  Score=48.71  Aligned_cols=110  Identities=14%  Similarity=0.050  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccccCCh-HHHHHHHH---HHHHHHHHhhc---------cchHHHHHHHHHHHhhhc
Q 015396           83 YAGYVGSSFMFGRALTSVFWGLVADRYGRK-PVIIMGTA---SVVIFNTLFGL---------SVNFWMAVLTRFLLGSLN  149 (407)
Q Consensus        83 ~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr-~~~~~~~~---~~~~~~~~~~~---------~~~~~~l~~~r~l~G~~~  149 (407)
                      +.-.....+.++-.+|..+..+.. .-++| +.+.+..+   ++....++|..         -++-+..++..++.|+..
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            356777888888888888665431 11222 12222222   23333333322         245567777789999999


Q ss_pred             cchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396          150 GLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (407)
Q Consensus       150 g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (407)
                      |..... ..+..+..++++|..+..+...+..+|..+|..++-.+
T Consensus       387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998775 88889999999999998888999999999888776443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.94  E-value=0.2  Score=47.17  Aligned_cols=145  Identities=15%  Similarity=0.262  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHHH---HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccc---ccCChHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFMI---KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVAD---RYGRKPVII  116 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~d---r~Grr~~~~  116 (407)
                      .+.+....+..++.........|.-.   ...+.+..     .+.++..-...++..+++.+.+.+++   |+||++.+.
T Consensus       242 ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~-----~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~  316 (461)
T KOG3098|consen  242 MLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTT-----YLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVL  316 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcch-----hHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchh
Confidence            34444555555555554444444222   12222221     12444444455556666666777765   578999999


Q ss_pred             HHHHHHHHHHHHhhcc------------------chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHH
Q 015396          117 MGTASVVIFNTLFGLS------------------VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVST  177 (407)
Q Consensus       117 ~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~  177 (407)
                      ++.++..+++++.-..                  ++.....+.-++.|++-+..... +.++.+.. +++|..+.++...
T Consensus       317 ~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kf  395 (461)
T KOG3098|consen  317 IGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKF  395 (461)
T ss_pred             HHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHH
Confidence            9888888877766442                  23456666778999998887776 88999988 6788889888888


Q ss_pred             HHHHHHHHHHHhhhhh
Q 015396          178 AWGIGLIIGPALGGFL  193 (407)
Q Consensus       178 ~~~~g~~~~~~~~~~l  193 (407)
                      -..++..++-......
T Consensus       396 yq~~~s~v~~f~~~~~  411 (461)
T KOG3098|consen  396 YQSVASCVAFFFSPYL  411 (461)
T ss_pred             HHHHHHHHHhhhhhhh
Confidence            8777777665554443

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=95.65  E-value=0.19  Score=43.19  Aligned_cols=108  Identities=15%  Similarity=0.095  Sum_probs=55.2

Q ss_pred             cchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 015396          166 EHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND  245 (407)
Q Consensus       166 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  245 (407)
                      ++|+........+.++|.++.-..  ++...        +-+... +..|+..+.+.+++.++-+++...+ +++-+...
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~--------~~~~~~-~~~W~~I~si~~lL~~IpLIly~if-Gk~fd~~~   69 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIP--FLISS--------SVVIAL-TNNWQWILSIFILLIFIPLILYIIF-GKNFDIYS   69 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhh--HHhcc--------hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh-cccccccC
Confidence            566666667777888888765443  22210        000001 3446766677766665555544444 22211111


Q ss_pred             CcchhhhhhhhhhhchhhhhhhhcccccccccccccchhHHHHHHHHHHhhc
Q 015396          246 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLH  297 (407)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (407)
                      +++++++            .+.....+....+.+|++..|...+.+......
T Consensus        70 ~~~k~~k------------~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~  109 (267)
T PF07672_consen   70 PKEKQEK------------ENSTLSKKPSYKSILKEKETWKWILIYGIWLVV  109 (267)
T ss_pred             ccccccc------------ccccccccchHHHHHccchHHHHHHHHHHHhee
Confidence            1100000            000112335778899999999887777765543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.28  E-value=0.068  Score=53.34  Aligned_cols=78  Identities=12%  Similarity=0.216  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHH-HHHHhhhhhhhcccccCC--hHHHHHHH
Q 015396           44 FSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYGR--KPVIIMGT  119 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~Gr--r~~~~~~~  119 (407)
                      +...+..++.......+..++|.+. +++|.++.+      .+++.+...+ +.+++.++.|+++||+++  |+.+.++.
T Consensus       333 ~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~------ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~  406 (633)
T TIGR00805       333 MLVILAQVIDSLAFNGYITFLPKYLENQYGISSAE------ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAI  406 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH------HHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHH
Confidence            3445555666666677777888555 568999998      8988887766 568999999999999984  56666666


Q ss_pred             HHHHHHHH
Q 015396          120 ASVVIFNT  127 (407)
Q Consensus       120 ~~~~~~~~  127 (407)
                      ++..++.+
T Consensus       407 ~~~~~~~~  414 (633)
T TIGR00805       407 CLSTLSYL  414 (633)
T ss_pred             HHHHHHHH
Confidence            66655543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.28  E-value=1.1  Score=42.48  Aligned_cols=51  Identities=18%  Similarity=0.134  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHh
Q 015396          134 NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPAL  189 (407)
Q Consensus       134 ~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  189 (407)
                      .++..++.-++.|++.+..... .++.+ .+|++    .+..+..+.+++++++.++
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~----~~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPST----YSSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHH----HHHHHHhcchhHHHHHHHH
Confidence            4566666677888888877765 55555 56654    3445555666666655544

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=95.07  E-value=0.036  Score=42.73  Aligned_cols=75  Identities=15%  Similarity=0.159  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHHhhhhhhhH-hhhhh-----hHHHHHHHhhcCCCCC
Q 015396          331 ITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLA-FLLNC-----ASVVKNLLSSSGPGSK  404 (407)
Q Consensus       331 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~p~~~  404 (407)
                      ...++..++. +..+++.||++||+.+..+.....++.+.............. ...+.     .........+.+|++.
T Consensus         6 ~~~~~~~~~~-~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         6 GYALGQLIYS-PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             eehhHHHHHH-hhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            3455666666 478899999999999988888777776665544332222111 11111     1233456778888877


Q ss_pred             CC
Q 015396          405 RS  406 (407)
Q Consensus       405 rs  406 (407)
                      |+
T Consensus        85 ~~   86 (141)
T TIGR00880        85 RG   86 (141)
T ss_pred             hh
Confidence            65

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=94.63  E-value=0.011  Score=53.27  Aligned_cols=106  Identities=20%  Similarity=0.133  Sum_probs=2.2

Q ss_pred             HHHHHHHHHHHHhhhhhhhccccc-CChHHHHHHHHHHHH---HHHHhh----------ccchHHHHHHHHHHHhhhccc
Q 015396           86 YVGSSFMFGRALTSVFWGLVADRY-GRKPVIIMGTASVVI---FNTLFG----------LSVNFWMAVLTRFLLGSLNGL  151 (407)
Q Consensus        86 ~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~~~~~~~~~~~---~~~~~~----------~~~~~~~l~~~r~l~G~~~g~  151 (407)
                      .....+.++-.+|....++.-=+. .+|++.. ..+.-.+   ..+++.          ..+|-+..++.-++.|+..|-
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy  264 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY  264 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch
Confidence            356678888888888777642111 2444333 3222222   222221          123456677788999999999


Q ss_pred             hhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhh
Q 015396          152 LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGF  192 (407)
Q Consensus       152 ~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (407)
                      .... ..+..+..++++|..+..+......+|..+|..++-.
T Consensus       265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             --HHHH------------------------------------
T ss_pred             hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8775 8889999999999888888888888888888776533

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=94.60  E-value=0.0094  Score=57.89  Aligned_cols=147  Identities=14%  Similarity=0.251  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhhhhhhchhhhHH-HHHHhhcccccccchhhHHHHHHHHHHH-HHHHhhhhhhhcccccC--ChHHHHHHH
Q 015396           44 FSIWIIVLCTALPISSLFPFLY-FMIKDFQIAKREEDIGSYAGYVGSSFMF-GRALTSVFWGLVADRYG--RKPVIIMGT  119 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~~~~-~~~~~~~~~G~l~dr~G--rr~~~~~~~  119 (407)
                      ....++.....+....+..+.| ++..+|+.++++      ++++..+..+ +.++|.+++|++..|+.  .|..+.++.
T Consensus       308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~------A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~  381 (539)
T PF03137_consen  308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQ------ASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCI  381 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHH
Confidence            3455667777777888888898 455689999988      7777765555 67788999999999885  355554444


Q ss_pred             HHHHHHHHHhh---c--c---------c----------------------------------------hHHHHHHHHHHH
Q 015396          120 ASVVIFNTLFG---L--S---------V----------------------------------------NFWMAVLTRFLL  145 (407)
Q Consensus       120 ~~~~~~~~~~~---~--~---------~----------------------------------------~~~~l~~~r~l~  145 (407)
                      +...+..+...   +  +         .                                        ++..+++..++.
T Consensus       382 v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~  461 (539)
T PF03137_consen  382 VVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFIL  461 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHH
Confidence            44443333210   0  0         0                                        012233333333


Q ss_pred             hhhccc-hhHHHHHHhhhccccchhhhhHHHHH-HHHHHHHHHHHhhhhhcCC
Q 015396          146 GSLNGL-LGPIKAYACEIFREEHQALGLSTVST-AWGIGLIIGPALGGFLAQP  196 (407)
Q Consensus       146 G~~~g~-~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~l~~~  196 (407)
                      -+..+. ..|....+-..+|+++|+.++|+... .-.+|.+=||++-|.+.|.
T Consensus       462 ~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~  514 (539)
T PF03137_consen  462 SFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS  514 (539)
T ss_dssp             -----------------------------------------------------
T ss_pred             HHHHHhcccchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence            333333 34445566688899999999999854 5567888899999999983

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=94.02  E-value=1.4  Score=41.08  Aligned_cols=114  Identities=17%  Similarity=0.167  Sum_probs=78.3

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhH-H
Q 015396           79 DIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII--MGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-I  155 (407)
Q Consensus        79 ~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~  155 (407)
                      +...|-|.+-++..+.+.++++..|++..++.+-.-+.  ...++.+...++++..+|.|..+++.++.+...-...+ +
T Consensus       282 ~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA  361 (412)
T PF01770_consen  282 NESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIA  361 (412)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456899999999999999999999977777644333  33445555667778889999999998888776555444 4


Q ss_pred             HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          156 KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       156 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ..-++.....+.-+..+|+..+.   +.++-.++...+.+
T Consensus       362 ~~qIA~~l~~e~yaLVFGiNtf~---Al~LQtilT~iV~d  398 (412)
T PF01770_consen  362 SFQIAKNLSEERYALVFGINTFV---ALVLQTILTLIVVD  398 (412)
T ss_pred             HHHHHHhccccceeeeeeeHHHH---HHHHHHheEEEEEc
Confidence            66677666777778888777553   33444444433333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=93.47  E-value=1.4  Score=40.67  Aligned_cols=108  Identities=19%  Similarity=0.100  Sum_probs=75.2

Q ss_pred             hHHHHHHHH-HHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHh---------hccchHHHHHHHHHHHhhhccc
Q 015396           82 SYAGYVGSS-FMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLF---------GLSVNFWMAVLTRFLLGSLNGL  151 (407)
Q Consensus        82 ~~~g~~~~~-~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~---------~~~~~~~~l~~~r~l~G~~~g~  151 (407)
                      ++.-++... +.+...+|.+.+.++-++= ||...+.+ ++-.+..-++         ..-.+-+++++.-.+.|+..|-
T Consensus       282 ~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v-~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGY  359 (406)
T KOG1479|consen  282 WYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPV-LLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGY  359 (406)
T ss_pred             hhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHH-HHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccch
Confidence            345566666 8888899988888776653 44433332 2222222222         2235667788888999999999


Q ss_pred             hhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhh
Q 015396          152 LGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGG  191 (407)
Q Consensus       152 ~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (407)
                      ...+ +.+..+..|++++-.+-.+.......|.+.|..++-
T Consensus       360 ltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~  400 (406)
T KOG1479|consen  360 LTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW  400 (406)
T ss_pred             HhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            8886 889999999988888877778888888888776653

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=92.79  E-value=0.4  Score=42.26  Aligned_cols=108  Identities=15%  Similarity=0.019  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHHHHHHhhhc
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPIKAYACEIF  163 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~~~~~  163 (407)
                      .|.+.-+-.+...+..+.+..+.||+---.=..+..++.+.+.++.+++++.++-+.+-.+..++.|..-...--++..+
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~Y  143 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSRY  143 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhccC
Confidence            45555566677778888888889987654445556777888888999999999888887777777776555433333344


Q ss_pred             cccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          164 REEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       164 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ++.    ..+.++.+.+.++.+|..-=.++.+
T Consensus       144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~  171 (409)
T KOG3880|consen  144 PSI----VIAGWSSGTGGAGLIGASSYAFLTS  171 (409)
T ss_pred             CCc----eeccccCCCCcchhhhhhHHHHHhh
Confidence            432    3444555555555666544444443

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.42  E-value=0.13  Score=43.93  Aligned_cols=66  Identities=17%  Similarity=0.288  Sum_probs=47.0

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcc---------cccCChHH
Q 015396           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVA---------DRYGRKPV  114 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~---------dr~Grr~~  114 (407)
                      +.-..+.+.+-...+.....+-.+.++.|.++.+      ...+.-+..+.-++..++.|..+         ||+|||+.
T Consensus        20 f~yGvGHmlNDitAScWFTYlllfltqiglsp~~------~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~   93 (412)
T KOG4830|consen   20 FAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSS------RAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS   93 (412)
T ss_pred             eeechhHHHhhHHHHHHHHHHHHHHHHhcCCcch------hHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence            3344455556666666666777778888999988      77777777777788888877554         58999875


Q ss_pred             H
Q 015396          115 I  115 (407)
Q Consensus       115 ~  115 (407)
                      .
T Consensus        94 w   94 (412)
T KOG4830|consen   94 W   94 (412)
T ss_pred             e
Confidence            3

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=90.89  E-value=0.69  Score=43.15  Aligned_cols=111  Identities=17%  Similarity=0.075  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhc
Q 015396           85 GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIF  163 (407)
Q Consensus        85 g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~  163 (407)
                      .|-..++.+...+.+...-+++||+|-|+.+..+...+.++..+.+..++.+....-+...|+-.+....+ +..+++..
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~  414 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA  414 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence            35566677778899999999999999776666666667777777788888888888888888543332222 33222221


Q ss_pred             ---------------------cc--cchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          164 ---------------------RE--EHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       164 ---------------------~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                                           .+  ..+|...|+.+....+.+++.....|.+.+
T Consensus       415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~  469 (498)
T KOG0637|consen  415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQ  469 (498)
T ss_pred             HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhh
Confidence                                 11  123556667777777888777776677666

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=87.64  E-value=3.6  Score=35.63  Aligned_cols=56  Identities=20%  Similarity=0.125  Sum_probs=48.3

Q ss_pred             CccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhH
Q 015396          316 GGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPY  373 (407)
Q Consensus       316 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (407)
                      +.+|+|..+...+.....++..++  +..|.+.|+++++.++.+|.....++...+..
T Consensus        30 ~~l~~sq~~l~~l~~~~~~G~~~G--~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l   85 (250)
T PF06813_consen   30 SRLGYSQSQLNTLSTAGDIGSYFG--ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWL   85 (250)
T ss_pred             HHhCCCHHHHHHHHHHHHHHhhcc--HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            348999999999999999998875  47899999999999999999998888876543

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=86.31  E-value=3.3  Score=36.73  Aligned_cols=76  Identities=14%  Similarity=0.182  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhH-HHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          119 TASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      ..++.+......+.+++|..++.-+..|+-+|...+ ..--+.+-.++++|-.+++....+-++|..++.+++-.+-
T Consensus       326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            334444455566789999999999999986666555 4666667678899999999999988898888877765543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=81.17  E-value=16  Score=32.05  Aligned_cols=98  Identities=17%  Similarity=0.130  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCCh--HHHHHHHHHHHHHHHHhhc----cc---hHHHHHHHHHHHhhhccchhH
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRK--PVIIMGTASVVIFNTLFGL----SV---NFWMAVLTRFLLGSLNGLLGP  154 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr--~~~~~~~~~~~~~~~~~~~----~~---~~~~l~~~r~l~G~~~g~~~~  154 (407)
                      -|.+.+.++++..+|+-+..++..|-..|  ..+.+..+..++...+...    ++   ++..=+++..+.-.+.|.+.|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            78999999999999999998888776554  3455544444443332222    22   122223444455566778888


Q ss_pred             H-HHHHhhhccccchhhhhHHHHHHHHH
Q 015396          155 I-KAYACEIFREEHQALGLSTVSTAWGI  181 (407)
Q Consensus       155 ~-~~~~~~~~~~~~r~~~~~~~~~~~~~  181 (407)
                      . .-+-++..|++.|...+.++..-.++
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLni  391 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNI  391 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhH
Confidence            6 77888999999999998887654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	407
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	2e-06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	5e-06
2cfq_A	417	Lactose permease; transport, transport mechanism,	8e-06
2cfq_A	417	Lactose permease; transport, transport mechanism,	7e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 18/158 (11%)

Query: 89  SSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSL 148
            +++    ++ +F+G ++DR GR+PVI++G +  ++   +   + +  + +    + G +
Sbjct: 42  GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG-M 100

Query: 149 NGLLGPIKAYAC--EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSS 206
              +G + A     +++         S ++    +  ++ P +GG L         +++ 
Sbjct: 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------MWNW 153

Query: 207 ESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
            + +     FL  LC  +        A W+PET     
Sbjct: 154 RACY----LFLLVLCAGVTF----SMARWMPETRPVDA 183

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 72/420 (17%), Positives = 115/420 (27%), Gaps = 141/420 (33%)

Query: 87  VGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFG---------------- 130
           V     F      +FW  +  +    P  ++      +   L                  
Sbjct: 176 VQCKMDFK-----IFW--LNLKNCNSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 131 -LSVNFWMAVLTRFLLGSL--NGLL--------GPIKAYA--CEIF---REEHQALGLST 174
            L ++   A L R L      N LL            A+   C+I    R +     LS 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 175 VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF----PYFLP---C----LCIS 223
            +T     + +          P E        +SL  K+    P  LP          +S
Sbjct: 284 ATT---THISLDHHSMTL--TPDE-------VKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 224 LFA--------------------FGVTIAAFW--LPETLHRHNDDD-----DSCDVSYDA 256
           + A                        I +    L    +R   D       S  +    
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 257 LESASAEVKEEEGREATP---KKSLLKNWPLMSSIIVYCVF-----------SLHDM--- 299
           L     +V + +         K SL++  P  S+I +  ++           +LH     
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

Query: 300 AYSEI--FSLWANSPKKLGGLNYSTQMVGEVLA-------ITGFSLLVFQLSLYPFLE-- 348
            Y+    F      P  L    Y    +G  L        +T F ++        FLE  
Sbjct: 452 HYNIPKTFDSDDLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQK 506

Query: 349 -RILGPIMVARIAGVLTIPLLTSY-PYI--------AMLSGFGLAFLLNCASVVKNLLSS 398
            R       A  + + T+  L  Y PYI         +++   L FL        NL+ S
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEE---NLICS 562

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 27/219 (12%), Positives = 56/219 (25%), Gaps = 34/219 (15%)

Query: 85  GYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFL 144
           G+  S        +    G V+DR   +  +  G           G       ++   F+
Sbjct: 65  GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFV 124

Query: 145 LGSLNGLL-GPIKAYACEI------FREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPA 197
           L  L G   G    +          + ++ +   +S  + A  +G  I P L        
Sbjct: 125 LLFLCGWFQGM--GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA-- 180

Query: 198 EKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-----PETLHRHNDDDDSCDV 252
                     +                    + +A F                 +   + 
Sbjct: 181 ----WFNDWHAAL-----------YMPAFCAILVALFAFAMMRDTPQSCGLPPIE---EY 222

Query: 253 SYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVY 291
             D  +  + + ++E   +    + +L N  L    I  
Sbjct: 223 KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN 261

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 45/324 (13%), Positives = 91/324 (28%), Gaps = 48/324 (14%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSV---NFWMAVL 140
           AG + S+F FG  +  +  G++  +   K  II G     +   LF  +    N+ + ++
Sbjct: 63  AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122

Query: 141 TRFLLGSLNGLLG-PIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL------ 193
             F++ +  G L      +   +  E      L+   T    G II    G  L      
Sbjct: 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182

Query: 194 --------AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHND 245
                       E+      S  L  + PY +    + L A  + +     P     ++ 
Sbjct: 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTK--FPALQSDNHS 240

Query: 246 DDDSCDVSYDALESASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIF 305
           D                    ++G  +     L +      +++    +     A     
Sbjct: 241 D-------------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYL 281

Query: 306 SLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI-----LGPIMVARIA 360
             +A           +       L  T     + + +    + R      L    +  +A
Sbjct: 282 IRYAVEE----IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337

Query: 361 GVLTIPLLTSYPYIAMLSGFGLAF 384
             L       +  +  L+      
Sbjct: 338 LCLISAFAGGHVGLIALTLCSAFM 361

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 46.8 bits (111), Expect = 8e-06
 Identities = 41/322 (12%), Positives = 94/322 (29%), Gaps = 48/322 (14%)

Query: 81  GSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI---------FNTLFGL 131
            S  G + ++      L    +GL++D+ G +  ++     +++         F  L   
Sbjct: 42  KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQY 101

Query: 132 SVNFWMAVLTRFLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWG-IGLIIGPALG 190
           ++     V   +L    N     ++A+  ++ R  +   G + +   +G +G  +G ++ 
Sbjct: 102 NILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARM---FGCVGWALGASIV 158

Query: 191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSC 250
           G                 +F     F+  L          +  F   +            
Sbjct: 159 GI----------------MFTINNQFVFWLGSGCALILAVLLFFAKTDAPS--------- 193

Query: 251 DVSYDALESASAEVKEEEGREATPKKSLLKNWPLMS-SIIVYCVFSLHDMAYSEIFSLWA 309
                +   A+A               L +   L   S+ V  V   +D+   +  + + 
Sbjct: 194 -----SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFT 248

Query: 310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLT 369
           +           T++ G V  +               + RI G      +AG +    + 
Sbjct: 249 SFFATGE---QGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRII 304

Query: 370 SYPYIAMLSGFGLAFLLNCASV 391
              +        +   L+   V
Sbjct: 305 GSSFATSALEVVILKTLHMFEV 326

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 22/196 (11%)

Query: 43  LFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFW 102
             S+++I +     +       +F           E      GYV +      A    F 
Sbjct: 224 FLSLYVIGVSCTYDVFDQQFANFFTS----FFATGEQGTRVFGYVTTMGELLNASIMFFA 279

Query: 103 GLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACE 161
            L+ +R G K  +++    + +       + +    V+ + L       L      Y   
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339

Query: 162 IFREEHQALGLSTVS-TAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCL 220
            F     A            + +I    L G                 ++    +    L
Sbjct: 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGN----------------MYESIGFQGAYL 383

Query: 221 CISLFAFGVTIAAFWL 236
            + L A G T+ + + 
Sbjct: 384 VLGLVALGFTLISVFT 399

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	407
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.97
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.95
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.9
2xut_A	524	Proton/peptide symporter family protein; transport	99.89
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.6
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.5
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.48
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.39
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.35
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.06
2xut_A	524	Proton/peptide symporter family protein; transport	98.85

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=3.7e-32  Score=256.58  Aligned_cols=307  Identities=14%  Similarity=0.153  Sum_probs=241.4

Q ss_pred             CchHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHH
Q 015396           38 LPITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIM  117 (407)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~  117 (407)
                      .+++.+..++...+...+......+.+|.+.+++|.++.+      .|++.+++.++..+++++.|+++||+|||++++.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~   96 (438)
T 3o7q_A           23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQ------AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIIT   96 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHH------HHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHH
Confidence            4456666777788888888899999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh---hccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396          118 GTASVVIFNTLF---GLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (407)
Q Consensus       118 ~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (407)
                      +.++.+++.+++   +++++++.++++|++.|++.+...+. .++++|++|+++|++++++.+.+.++|..++|.+++.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  176 (438)
T 3o7q_A           97 GLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   88899999999999999999888775 99999999999999999999999999999999999999


Q ss_pred             c-CCCCCCC----------CcccccccccCCCChhHHHHHHHHHHHHHHHHhc--cccCCCCCCCCcchhhhhhhhhhhc
Q 015396          194 A-QPAEKYP----------NLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFW--LPETLHRHNDDDDSCDVSYDALESA  260 (407)
Q Consensus       194 ~-~~~~~~~----------~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~  260 (407)
                      . +..+...          ...+|+... ..+|+.++++.++..++..+..++  .||++++.+++++            
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~------------  243 (438)
T 3o7q_A          177 ILSNVPHQSQDVLDKMSPEQLSAYKHSL-VLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK------------  243 (438)
T ss_dssp             HHTSSCCCCHHHHHHSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS------------
T ss_pred             HhcccccccccccccCCcchhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccc------------
Confidence            8 5211000          000000000 111666666666655544443333  3444332111111            


Q ss_pred             hhhhhhhhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhh-ccCCCccCccccchhhHHHHHHHHHHHHHHH
Q 015396          261 SAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLW-ANSPKKLGGLNYSTQMVGEVLAITGFSLLVF  339 (407)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~  339 (407)
                             +++.....++++++|.++...+..++..........+.+.| ..+.     +|++..+.+...+...++..++
T Consensus       244 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~  311 (438)
T 3o7q_A          244 -------QGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI-----PGMTAGFAANYLTGTMVCFFIG  311 (438)
T ss_dssp             -------TTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----TTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -------ccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCcchhHHHHHHHHHHHHHHHH
Confidence                   01112355678899999999888888888888888889988 7664     6899999999999999999999


Q ss_pred             HHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHHh
Q 015396          340 QLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAM  376 (407)
Q Consensus       340 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (407)
                      .. +.+++.||+++|+.+..+..+..++++.+.+.+.
T Consensus       312 ~~-~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T 3o7q_A          312 RF-TGTWLISRFAPHKVLAAYALIAMALCLISAFAGG  347 (438)
T ss_dssp             HH-HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred             HH-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC
Confidence            85 8999999999999999888888777776655443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=8.3e-33  Score=261.99  Aligned_cols=304  Identities=12%  Similarity=0.068  Sum_probs=239.2

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      ++.+..+++..+...+....+.+.+|.+.+++ .+..+      .|++.+++.++..++++++|+++||+|||++++++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhH------HHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            45556777788888889999999999999999 99999      999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc----cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhc
Q 015396          120 ASVVIFNTLFGL----SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLA  194 (407)
Q Consensus       120 ~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  194 (407)
                      ++.+++.+++++    +++++.++++|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|.+++|.+++++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999    999999999999999998887775 999999999999999999999999999999999999988


Q ss_pred             CCCCCCCCccc-ccccccCCCChhHHHHHHHHHHHH-HHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccc
Q 015396          195 QPAEKYPNLFS-SESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (407)
Q Consensus       195 ~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (407)
                      +       ..| ||+.|         ++.++..++. ++..+++||++++...+++++... +..++.+++.++.....+
T Consensus       180 ~-------~~g~w~~~f---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  242 (451)
T 1pw4_A          180 A-------WFNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQ  242 (451)
T ss_dssp             H-------HTCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTH
T ss_pred             H-------HhccHHHHH---------HHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc-cccccchhhhhccccccc
Confidence            7       455 65555         7766666554 444567788776543222111110 000000000000111111


Q ss_pred             cccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHh-
Q 015396          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERIL-  351 (407)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-  351 (407)
                      ...++.++++.++...+..++..........++|.|+.+.     +|++..+.+.+.+..+++.+++.. +.+++.||+ 
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~~~  316 (451)
T 1pw4_A          243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVF  316 (451)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTS
T ss_pred             chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence            1246778899999998888888888888888999998875     789999999999999999999985 889999999 


Q ss_pred             -chhHHHHHHHHHHH-HHHhhhhH
Q 015396          352 -GPIMVARIAGVLTI-PLLTSYPY  373 (407)
Q Consensus       352 -~~~~~~~~~~~~~~-~~~~~~~~  373 (407)
                       ++|+.+..+..+.. ++++.+.+
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~  340 (451)
T 1pw4_A          317 RGNRGATGVFFMTLVTIATIVYWM  340 (451)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHH
Confidence             99888877766655 55554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.97  E-value=7.1e-31  Score=251.54  Aligned_cols=347  Identities=15%  Similarity=0.083  Sum_probs=236.8

Q ss_pred             HHHHHHHhhhhhhchhhhHHHHHHhhcccccc--cchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHH
Q 015396           46 IWIIVLCTALPISSLFPFLYFMIKDFQIAKRE--EDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (407)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~  123 (407)
                      ..++.+..+++...++..+|.+.++++.+...  .......|++.+++.+|..++++++|+++||+|||++++++.+++.
T Consensus        17 a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~   96 (491)
T 4gc0_A           17 ATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFF   96 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34566777788888999999999888654322  1223448899999999999999999999999999999999999999


Q ss_pred             HHHHHhh------------------ccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHH
Q 015396          124 IFNTLFG------------------LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLI  184 (407)
Q Consensus       124 ~~~~~~~------------------~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  184 (407)
                      ++.++++                  +++|++.++++|+++|++.|...+. ..+++|+.|+++|++..++.+.+..+|..
T Consensus        97 i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~  176 (491)
T 4gc0_A           97 ISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQL  176 (491)
T ss_dssp             HHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhh
Confidence            9999888                  4789999999999999999887775 99999999999999999999999999999


Q ss_pred             HHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhh--hhhhhch-
Q 015396          185 IGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSY--DALESAS-  261 (407)
Q Consensus       185 ~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~-  261 (407)
                      +++.++..+..       ..++.... .+.|+.++....+..++.++..+++||+|++...+++.++..+  ++..... 
T Consensus       177 ~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~  248 (491)
T 4gc0_A          177 LVYCVNYFIAR-------SGDASWLN-TDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTL  248 (491)
T ss_dssp             HHHHHHHHHHT-------TSCTTTTT-TTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhcchhhcc-------cccccccc-chhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCch
Confidence            99999888876       33333332 4567777788888888888888899999987544333322221  1110000 


Q ss_pred             -----hhhhh--hhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHH
Q 015396          262 -----AEVKE--EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGF  334 (407)
Q Consensus       262 -----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~  334 (407)
                           .+.++  .+.+........++.+..........+...........+..+....     .+.+...........++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~  323 (491)
T 4gc0_A          249 ATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-----LGASTDIALLQTIIVGV  323 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----SSCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-----cCCCccchhhHHHHHHH
Confidence                 00000  0111111222333344444443333333333222222222222221     45666666667777778


Q ss_pred             HHHHHHHhHHHHHHHHhchhHHHHHHHHHHHHHHhhhhHHHhhhh--h--hh-------HhhhhhhHHHHHHHhhcCCCC
Q 015396          335 SLLVFQLSLYPFLERILGPIMVARIAGVLTIPLLTSYPYIAMLSG--F--GL-------AFLLNCASVVKNLLSSSGPGS  403 (407)
Q Consensus       335 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-------~~~~~~~~~~~~~~~~~~p~~  403 (407)
                      ...++.. +..++.||+|||+.+..+.....++++.+........  .  ..       ....+..+....+.+|++|++
T Consensus       324 ~~~~~~~-~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~  402 (491)
T 4gc0_A          324 INLTFTV-LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA  402 (491)
T ss_dssp             HHHHHHH-HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTT
T ss_pred             HHHHHHH-HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHh
Confidence            8888874 8899999999999999888887777665544322111  0  00       111122234567889999999


Q ss_pred             CCC
Q 015396          404 KRS  406 (407)
Q Consensus       404 ~rs  406 (407)
                      .|+
T Consensus       403 ~R~  405 (491)
T 4gc0_A          403 IRG  405 (491)
T ss_dssp             THH
T ss_pred             HHH
Confidence            885

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.96  E-value=3.6e-29  Score=231.31  Aligned_cols=260  Identities=16%  Similarity=0.249  Sum_probs=218.3

Q ss_pred             HHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHH
Q 015396           44 FSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVV  123 (407)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~  123 (407)
                      +.++...+...+....+.+.+|.+.+++|.++.+      .+++.+.+.++..+++++.|+++||+|||+++..+.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~------~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   76 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA------VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM   76 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHH------HHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            4466777888888999999999999999999999      9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Q 015396          124 IFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPN  202 (407)
Q Consensus       124 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~  202 (407)
                      ++.++..++++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+....+|..++|.+++++.+       
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-------  149 (375)
T 2gfp_A           77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-------  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-------
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-------
Confidence            99999999999999999999999999888776 9999999999999999999999999999999999999987       


Q ss_pred             cccccccccCCCChhHHHHHHHHHHHHHH-HHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhccccccccccccc
Q 015396          203 LFSSESLFGKFPYFLPCLCISLFAFGVTI-AAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREATPKKSLLKN  281 (407)
Q Consensus       203 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (407)
                               .++|+..+.+.++..++..+ ..+++||+++++++++                      +.....++.+++
T Consensus       150 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~  198 (375)
T 2gfp_A          150 ---------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT----------------------RLLTSYKTLFGN  198 (375)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC----------------------CTTTCSTHHHHH
T ss_pred             ---------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc----------------------cHHHHHHHHhcC
Confidence                     34455555777766655544 4556777654432211                      122355678888


Q ss_pred             chhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhch
Q 015396          282 WPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGP  353 (407)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  353 (407)
                      |+++...+..++.......+..+.|.|..+.     +|+++.+.+.+.....++.+++.. +.+++.||.++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~g~~~~~~~~~~~~~~~-~~~~l~~r~~~  264 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-----LGLSSMTVSILFILPIPAAFFGAW-FAGRPNKRFST  264 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-----HHHHHHHHHHHHHTHHHHHHHHHH-HHHTTTTHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            9998888888887777777777777666543     788999999999999999999885 78888888887

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.95  E-value=1.3e-26  Score=222.01  Aligned_cols=339  Identities=14%  Similarity=0.135  Sum_probs=216.8

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHH-HHh-----hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccc-cCChH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKD-----FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADR-YGRKP  113 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~Grr~  113 (407)
                      +.++.++...+...+......+.++.+ .++     +|.+..+      .+++.+++.++..+++++.|+++|| +|||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~   86 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------AASIMAIYASMVYLSGTIGGFVADRIIGARP   86 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            445556666666666666666666644 444     8999999      9999999999999999999999999 89999


Q ss_pred             HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccc--hhhhhHHHHHHHHHHHHHHHHhh
Q 015396          114 VIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEH--QALGLSTVSTAWGIGLIIGPALG  190 (407)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~  190 (407)
                      ++..+.++..++.+++++++|++.++++|++.|++.+...+. .++++|++|+++  |+.++++++.+.++|..++|.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  166 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV  166 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887775 999999999988  77788889999999999999999


Q ss_pred             hhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhcc-ccCCCCCC---CCcchhhhhhhhhhh-------
Q 015396          191 GFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL-PETLHRHN---DDDDSCDVSYDALES-------  259 (407)
Q Consensus       191 ~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~~~~---~~~~~~~~~~~~~~~-------  259 (407)
                      +.+.+                ..+|+.++++.++..++..+...+. |+..++..   +++.+.++..+..+.       
T Consensus       167 ~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  230 (491)
T 4aps_A          167 GAAQE----------------AAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAG  230 (491)
T ss_dssp             HHHHH----------------HSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHH
T ss_pred             HHHHh----------------hhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHH
Confidence            99988                3445555577666555544443322 32221111   111111111010000       


Q ss_pred             -----------chhhhhh-------------------hhcccccccccccccchhHHHHHHHHHHhhccchhhhHHhhhc
Q 015396          260 -----------ASAEVKE-------------------EEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWA  309 (407)
Q Consensus       260 -----------~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (407)
                                 ...+.++                   ..++......+..+....+...+..++...........++.|.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (491)
T 4aps_A          231 FIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFA  310 (491)
T ss_dssp             HHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHH
T ss_pred             HHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence                       0000000                   0000111111111222233344444444444455555666666


Q ss_pred             cCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhchhHHHH-----HHHHHHHHHHhhhhHHHhh-------
Q 015396          310 NSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVAR-----IAGVLTIPLLTSYPYIAML-------  377 (407)
Q Consensus       310 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------  377 (407)
                      .+.     .+.+....+.......++..++.. +.+++.||++||+...     .+..+..+++..+......       
T Consensus       311 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (491)
T 4aps_A          311 AER-----VDSSWFPVSWFQSLNPLFIMLYTP-FFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKV  384 (491)
T ss_dssp             HHS-----CCCSSSCSGGGTTHHHHHHHHHHH-HHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTC
T ss_pred             HHH-----hccCccCHHHHhccchHHHHHHHH-HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            554     455545667777777888888774 7788999999876544     6777777776665553311       


Q ss_pred             hhhhh---Hhhhhh-----hHHHHHHHhhcCCCCCCCC
Q 015396          378 SGFGL---AFLLNC-----ASVVKNLLSSSGPGSKRSC  407 (407)
Q Consensus       378 ~~~~~---~~~~~~-----~~~~~~~~~~~~p~~~rs~  407 (407)
                      .....   ....+.     .........+.+|++.|+.
T Consensus       385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~  422 (491)
T 4aps_A          385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQ  422 (491)
T ss_dssp             CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSS
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHH
Confidence            11111   111111     2234667889999998863

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.90  E-value=5.5e-24  Score=199.28  Aligned_cols=293  Identities=11%  Similarity=0.129  Sum_probs=183.3

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHH-HhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMI-KDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      +.++.+....+...+......+.+|.+. +++|.++.+      .|++.+.+.++..++++++|+++||+|||++++.+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~------~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~   80 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII   80 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT------SHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            4555555666666667777788888655 568999999      999999999999999999999999999999999888


Q ss_pred             HHHHHHH---HHhhccchH-HHHHHHHHHHhhhccchhHH-HHHHhhhccc--cchhhhhHHHHHHHHHHHHHHHHhhhh
Q 015396          120 ASVVIFN---TLFGLSVNF-WMAVLTRFLLGSLNGLLGPI-KAYACEIFRE--EHQALGLSTVSTAWGIGLIIGPALGGF  192 (407)
Q Consensus       120 ~~~~~~~---~~~~~~~~~-~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~  192 (407)
                      .+.+++.   ....+++.. ..++..+++.|++.+...+. .....++.++  ++|+...+......++|..++|.++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~  160 (417)
T 2cfq_A           81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGI  160 (417)
T ss_dssp             HHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            7765432   111222221 12344566666655543332 3344444433  456777777777888999999999999


Q ss_pred             hcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccc
Q 015396          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (407)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (407)
                      +.+        .+         |+.++++.++..++..+..++.+|++++..+++++.+             ++.++...
T Consensus       161 l~~--------~~---------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~  210 (417)
T 2cfq_A          161 MFT--------IN---------NQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVG-------------ANHSAFSL  210 (417)
T ss_dssp             HHH--------HC---------SHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSS-------------SCCCCCCH
T ss_pred             HHH--------hc---------hhHHHHHHHHHHHHHHHHHHHcCcccccccccccccc-------------cccccccH
Confidence            875        12         4444455544444333333444433221110000000             00000111


Q ss_pred             cccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 015396          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (407)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (407)
                      ...++++++++++...+..++.......+..++|.|+.+...  ..+.+....+.......++..++.. +.+++.||++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~-~~g~l~dr~g  287 (417)
T 2cfq_A          211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA--TGEQGTRVFGYVTTMGELLNASIMF-FAPLIINRIG  287 (417)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS--SHHHHTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHC
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence            234567788888776665454444444444556766643311  1234455677888888888888874 8899999999


Q ss_pred             hhHHHHHHHHHHHHHHhhhh
Q 015396          353 PIMVARIAGVLTIPLLTSYP  372 (407)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~  372 (407)
                      +|+.+..+..+.++..+.+.
T Consensus       288 ~~~~l~~~~~~~~~~~~~~~  307 (417)
T 2cfq_A          288 GKNALLLAGTIMSVRIIGSS  307 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99998888777776655544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.89  E-value=2.8e-22  Score=193.42  Aligned_cols=170  Identities=15%  Similarity=0.201  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHH-HHHHhhc------ccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc-CChHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLY-FMIKDFQ------IAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY-GRKPV  114 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-Grr~~  114 (407)
                      ++.+....++..+......+.++ ++.+++|      .+..+      .+++.+++.++..+++++.|+++||+ |||++
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~------~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~   87 (524)
T 2xut_A           14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAV------AKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT   87 (524)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTT------HHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            33455566666666666667776 4567789      99998      99999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHH---HHHHHHHHHHHHHHh
Q 015396          115 IIMGTASVVIFNTLFGLSV-NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLST---VSTAWGIGLIIGPAL  189 (407)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~  189 (407)
                      +..+.++.+++.+++++++ +++.+++.|++.|++.+...+. .+++.|++|+++|+++.+.   .+.+.++|..++|.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~  167 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS  167 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998 9999999999999998887775 9999999999999876666   889999999999999


Q ss_pred             hhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHh
Q 015396          190 GGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAF  234 (407)
Q Consensus       190 ~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (407)
                      ++.+.+                ..+|+.++.+.++..++..+..+
T Consensus       168 ~~~l~~----------------~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          168 MPLLLK----------------NFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             STHHHH----------------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhc----------------cccHHHHHHHHHHHHHHHHHHHH
Confidence            999987                44455555777666555544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.60  E-value=7.6e-15  Score=138.45  Aligned_cols=174  Identities=12%  Similarity=0.066  Sum_probs=141.6

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhccccc--CChHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRY--GRKPVIIM  117 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~--Grr~~~~~  117 (407)
                      +.++...+..++............|.+.++ +|.+..+      .+++.+...++..++.++.|++.||+  |||+.+..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  325 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  325 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence            445556666666777777778888877766 8999888      99999999999999999999999999  99999888


Q ss_pred             HHHHHH-HHHHHhhcc--chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHH-HHHHHHHhhhh
Q 015396          118 GTASVV-IFNTLFGLS--VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF  192 (407)
Q Consensus       118 ~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~  192 (407)
                      +.++.. ++.++..+.  .+.+.+.+..++.|++.+...+. ..++.|.+|+++|++++++.+....+ |..++|.+.+.
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~  405 (451)
T 1pw4_A          326 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877766 666666665  36788888888999987776665 89999999999999999999999999 99999999999


Q ss_pred             hcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHHHhcc
Q 015396          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWL  236 (407)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (407)
                      +.+                ..+|...+++.++..++..+..+++
T Consensus       406 l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          406 TVD----------------FFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHH----------------SSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH----------------hcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            998                4455666677777666655554444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.50  E-value=2.2e-13  Score=127.96  Aligned_cols=144  Identities=10%  Similarity=0.044  Sum_probs=117.2

Q ss_pred             HHHHHHHHHHhhhhhhchhhhHHHH-HHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHH
Q 015396           43 LFSIWIIVLCTALPISSLFPFLYFM-IKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTA  120 (407)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~  120 (407)
                      ++...+..++............|.+ .++ +|.+..+      .++..+...++..++.++.|+++||+|||+++..+.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~  333 (438)
T 3o7q_A          260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYAL  333 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            3444445555555556666777766 555 5999888      9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          121 SVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       121 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      +..++.++..+.++.+.++.. ++.|++.+...+. .++..|.+|++ |+.+.++.. ...+|..++|.+.|.+.+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~  406 (438)
T 3o7q_A          334 IAMALCLISAFAGGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD  406 (438)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence            999998888888887665544 7888887777775 88889999966 888888776 566999999999999998

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.48  E-value=2.3e-13  Score=127.14  Aligned_cols=141  Identities=18%  Similarity=0.129  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhH-HHHHHhhh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP-IKAYACEI  162 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~~~~~  162 (407)
                      .++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+ ...++.|.
T Consensus       261 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  340 (417)
T 2cfq_A          261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888888888889999999999999999999998888888887888888888888887788877665555 48899999


Q ss_pred             ccccchhhhhHH-HHHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-HhccccCC
Q 015396          163 FREEHQALGLST-VSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPETL  240 (407)
Q Consensus       163 ~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~  240 (407)
                      +|++.|+++.+. ++....+|..++|.++|++.+                ..++...+.+.++..++..+. .+..||++
T Consensus       341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~----------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHH----------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHH----------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            999999999998 488888999999999999987                334455556666666655544 34455433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.39  E-value=2e-12  Score=123.24  Aligned_cols=182  Identities=12%  Similarity=0.050  Sum_probs=122.4

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVI  124 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~  124 (407)
                      ......+......+.+....+.+.+..+.+...      .........+...++.++.+++.||+|||+.++.+.....+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDI------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  354 (491)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccc------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence            334444444555666666777888888877766      66667777888899999999999999999999988888777


Q ss_pred             HHHHhhcc-----chHHHHHHHH-HHHhhhccchhHHHHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcCCCC
Q 015396          125 FNTLFGLS-----VNFWMAVLTR-FLLGSLNGLLGPIKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE  198 (407)
Q Consensus       125 ~~~~~~~~-----~~~~~l~~~r-~l~G~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  198 (407)
                      +.+..+..     ++...+.... +..+++.+.....+.+.+|.+|.+.|++++++......+|..+++.+.+.+.+.. 
T Consensus       355 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-  433 (491)
T 4gc0_A          355 GMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-  433 (491)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            76655432     2222222222 2233333333334899999999999999999999999999999988877765410 


Q ss_pred             CCCCcccccccccCCCChhHHHHHHHHHHHHH-HHHhccccCCCC
Q 015396          199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVT-IAAFWLPETLHR  242 (407)
Q Consensus       199 ~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~  242 (407)
                            +...   ..++...+++.++.+++.. +.++++||++.+
T Consensus       434 ------~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~  469 (491)
T 4gc0_A          434 ------WLVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGK  469 (491)
T ss_dssp             ------HHHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             ------HHHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence                  0000   1223344456666655544 456789998764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.35  E-value=5.9e-12  Score=120.06  Aligned_cols=145  Identities=10%  Similarity=-0.010  Sum_probs=111.8

Q ss_pred             HHHHHHHHhhhhhhchhhhHHHHHHh-hcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHH-----HH
Q 015396           45 SIWIIVLCTALPISSLFPFLYFMIKD-FQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVII-----MG  118 (407)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~-----~~  118 (407)
                      .++...+............+|.+.++ ++.+..+      .++..+...++..++.++.|++.||+|||+...     .+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~  360 (491)
T 4aps_A          287 PLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP------VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG  360 (491)
T ss_dssp             HHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSC------SGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHhccCccC------HHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence            34444444455555556666755544 6666556      788888888999999999999999999986654     67


Q ss_pred             HHHHHHHHHHhhccc---------hHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHH
Q 015396          119 TASVVIFNTLFGLSV---------NFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPA  188 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~  188 (407)
                      .++.+++.++.....         +.+.+++..++.|++.+...+. ..++.|.+|+++|++++++.+....+|..++|.
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~  440 (491)
T 4aps_A          361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ  440 (491)
T ss_dssp             HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777766665532         6777888888999988886664 999999999999999999999999999999999


Q ss_pred             hhhhhcC
Q 015396          189 LGGFLAQ  195 (407)
Q Consensus       189 ~~~~l~~  195 (407)
                      +.+.+.+
T Consensus       441 ~~~~~~~  447 (491)
T 4aps_A          441 LVTLYNA  447 (491)
T ss_dssp             HGGGGGG
T ss_pred             HHHHHhc
Confidence            9998875

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.06  E-value=1.8e-11  Score=112.39  Aligned_cols=146  Identities=13%  Similarity=0.069  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHHHH-hhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFMIK-DFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      +.++...+..++............|.+.+ ++|.++.+      .+++.+...++..++.++.|++.||+|++.  ..+.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~  270 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMT------VSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSV  270 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHH------HHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            34445555556666666666667775544 48998888      999999999999999999999999998732  2232


Q ss_pred             HH-HHHHHH--Hhhc--cchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396          120 AS-VVIFNT--LFGL--SVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (407)
Q Consensus       120 ~~-~~~~~~--~~~~--~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (407)
                      .. ...+..  ....  .++.+.+++..++.|++.+...+. .+++.|.+| ++|+++.++.+....+|..++|.+.+.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          271 ICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             HHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 222222  1111  236777778888999988887775 899999998 8999999999999999999999999998


Q ss_pred             cC
Q 015396          194 AQ  195 (407)
Q Consensus       194 ~~  195 (407)
                      .+
T Consensus       350 ~~  351 (375)
T 2gfp_A          350 PQ  351 (375)
T ss_dssp             HH
T ss_pred             hc
Confidence            76

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.85  E-value=1.1e-08  Score=98.16  Aligned_cols=112  Identities=13%  Similarity=0.025  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcc----cccCC----hHHHHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHHh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVA----DRYGR----KPVIIMGTASVVIFNTLFGLS---------VNFWMAVLTRFLLG  146 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~----dr~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G  146 (407)
                      .+++.+...++..++.++.+++.    ||.|+    ++.+..+.++.+++.++.++.         .+.+.+++..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            56666666677777788887775    55543    356677778888877776663         36777888889999


Q ss_pred             hhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhhcC
Q 015396          147 SLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQ  195 (407)
Q Consensus       147 ~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  195 (407)
                      ++.+...+. .+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            998887775 8999999999999999999999999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	407
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	3e-11
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-07

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 62.8 bits (151), Expect = 3e-11
 Identities = 42/324 (12%), Positives = 87/324 (26%), Gaps = 24/324 (7%)

Query: 84  AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRF 143
            G+  S        +    G V+DR   +  +  G           G       ++   F
Sbjct: 61  LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF 120

Query: 144 LLGSLNGLLGPIKAYAC-----EIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAE 198
           +L  L G    +    C       + ++ +   +S  + A  +G  I P L         
Sbjct: 121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL------ 174

Query: 199 KYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALE 258
                     +     +       +  A  V + AF +     +        +   D  +
Sbjct: 175 ---------GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPD 225

Query: 259 SASAEVKEEEGREATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGL 318
             + + ++E   +    + +L N  L    I      L      +    +    K     
Sbjct: 226 DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALD 285

Query: 319 NYSTQMVGEVLAITGFSLLVFQLSLYPFLERILGPIMVARIAGVLTIPLL----TSYPYI 374
             S        A    +LL   +S   F        +       +   +        P +
Sbjct: 286 KSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV 345

Query: 375 AMLSGFGLAFLLNCASVVKNLLSS 398
            M+    + FL+    ++  L + 
Sbjct: 346 DMICMIVIGFLIYGPVMLIGLHAL 369

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 20/211 (9%), Positives = 55/211 (26%), Gaps = 14/211 (6%)

Query: 42  ELFSIWIIVLCTALPISSLFPFL-YFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSV 100
             +   +        + + FPF   ++     I+       S  G + ++      L   
Sbjct: 8   NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHIS------KSDTGIIFAAISLFSLLFQP 61

Query: 101 FWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGP------ 154
            +GL++D+ G +  ++     +++    F + +   +      +   + G+         
Sbjct: 62  LFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121

Query: 155 -IKAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKF 213
                A                     +G  +G ++ G +     ++     S       
Sbjct: 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILA 181

Query: 214 PYFLPCLCISLFAFGVTIAAFWLPETLHRHN 244
                    +  +  V  A            
Sbjct: 182 VLLFFAKTDAPSSATVANAVGANHSAFSLKL 212

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	407
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.89
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.57
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.43

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=5.9e-31  Score=246.44  Aligned_cols=291  Identities=12%  Similarity=0.045  Sum_probs=219.0

Q ss_pred             chHHHHHHHHHHHHhhhhhhchhhhHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           39 PITELFSIWIIVLCTALPISSLFPFLYFMIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      +|..+..+++..+..+++...+....|.+. |+|.|.++      .|++.+++.+++.++++++|+++||+|||+++..+
T Consensus        23 ~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~------~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~   95 (447)
T d1pw4a_          23 RWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGD------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG   95 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSC------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            444455566677777777778888888665 68999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcc----chHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 015396          119 TASVVIFNTLFGLS----VNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGIGLIIGPALGGFL  193 (407)
Q Consensus       119 ~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  193 (407)
                      .++.+++.++++++    ++++.+++.|++.|++.+...+. .+++.|++|+++|++++++.+.+..+|..++|.+++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_          96 LILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             HHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            99999999888776    46788999999999998887775 99999999999999999999999999999999999887


Q ss_pred             cCCCCCCCCcccccccccCCCChhHHHHHHHHHHHH-HHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcccc
Q 015396          194 AQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGV-TIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGREA  272 (407)
Q Consensus       194 ~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (407)
                      ...      ..+||+.+         ++.++..++. ++..++++|.|+.......++.+. +..++..++.+++....+
T Consensus       176 ~~~------~~~w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  239 (447)
T d1pw4a_         176 MAW------FNDWHAAL---------YMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN-DYPDDYNEKAEQELTAKQ  239 (447)
T ss_dssp             HHH------TCCSTTCT---------HHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC-C-------------CCTH
T ss_pred             hhh------hhcccccc---------hhhhhhHHHHHHHHHHhcccchhhcccchhhhhhh-hcccchhhccccccchhh
Confidence            762      22444444         6665555544 344555666555433222211111 111111111122222233


Q ss_pred             cccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHhc
Q 015396          273 TPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERILG  352 (407)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  352 (407)
                      ...+..++++.++......++..........+.+.|+.+.     ++++..+.+.......+..+++.. +.+++.||.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~  313 (447)
T d1pw4a_         240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEV-----KHFALDKSSWAYFLYEYAGIPGTL-LCGWMSDKVF  313 (447)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTB-----SCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTS
T ss_pred             HHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccc-----cccccchhhhhhhcchhhhhhhhh-hhhhhhhhcc
Confidence            3456778889999888888888888888888899888776     789999999999999999999985 8899999998


Q ss_pred             hhHHHH
Q 015396          353 PIMVAR  358 (407)
Q Consensus       353 ~~~~~~  358 (407)
                      +++...
T Consensus       314 ~~~~~~  319 (447)
T d1pw4a_         314 RGNRGA  319 (447)
T ss_dssp             TTCHHH
T ss_pred             cccccc
Confidence            765433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=2.6e-22  Score=184.36  Aligned_cols=327  Identities=10%  Similarity=0.066  Sum_probs=206.3

Q ss_pred             hHHHHHHHHHHHHhhhhhhchhhhHHH-HHHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHH
Q 015396           40 ITELFSIWIIVLCTALPISSLFPFLYF-MIKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMG  118 (407)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~  118 (407)
                      .++++.+....++..+......|.+|. +.+++|.|+++      .|++.+++.++..+++++.|+++||+||||+++++
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~------~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~   79 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD------TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI   79 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH------HHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence            366777788888888888889999996 56778999999      99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccchHHHH----HHHHHHHhhhccchhH-HHHHHhhhcc--ccchhhhhHHHHHHHHHHHHHHHHhhh
Q 015396          119 TASVVIFNTLFGLSVNFWMA----VLTRFLLGSLNGLLGP-IKAYACEIFR--EEHQALGLSTVSTAWGIGLIIGPALGG  191 (407)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~l----~~~r~l~G~~~g~~~~-~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~  191 (407)
                      ..+..++..+..+..+....    ++.+.+.+.+.+.... ......+..+  .+++.+..+........+..++|.+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (417)
T d1pv7a_          80 ITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG  159 (417)
T ss_dssp             HHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence            99998888888776665443    3444444444333322 3333333322  234556677788888999999999999


Q ss_pred             hhcCCCCCCCCcccccccccCCCChhHH-HHHHHHHHHHHHHHhccccCCCCCCCCcchhhhhhhhhhhchhhhhhhhcc
Q 015396          192 FLAQPAEKYPNLFSSESLFGKFPYFLPC-LCISLFAFGVTIAAFWLPETLHRHNDDDDSCDVSYDALESASAEVKEEEGR  270 (407)
Q Consensus       192 ~l~~~~~~~~~~~gw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (407)
                      .+.+                . .|+..+ .......+...+..+..+|.++..++++++++..              ++.
T Consensus       160 ~l~~----------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~  208 (417)
T d1pv7a_         160 IMFT----------------I-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANH--------------SAF  208 (417)
T ss_dssp             HHHH----------------H-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCC--------------CCC
T ss_pred             cccc----------------c-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhc--------------ccc
Confidence            9875                1 122222 3333344444555566666655443332211110              001


Q ss_pred             cccccccccccchhHHHHHHHHHHhhccchhhhHHhhhccCCCccCccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 015396          271 EATPKKSLLKNWPLMSSIIVYCVFSLHDMAYSEIFSLWANSPKKLGGLNYSTQMVGEVLAITGFSLLVFQLSLYPFLERI  350 (407)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  350 (407)
                      ......+..+++..+......................+....  ....+.+....+.......++..++.. ..+++.||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~r  285 (417)
T d1pv7a_         209 SLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF--FATGEQGTRVFGYVTTMGELLNASIMF-FAPLIINR  285 (417)
T ss_dssp             CHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHH
T ss_pred             cccccccccccccccchhhhhHHHHHHHHhhhcccccccccc--ccccccchhhhcccccccccccccchh-hhhhhhcc
Confidence            111222233334333333333333333223333333332221  122566777788888888888888874 88999999


Q ss_pred             hchhHHHHHHHHHHHHHHhhhhHHHhhhhhhhHhhhh------hhHHHHHHHhhcCCCCCCC
Q 015396          351 LGPIMVARIAGVLTIPLLTSYPYIAMLSGFGLAFLLN------CASVVKNLLSSSGPGSKRS  406 (407)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~~rs  406 (407)
                      .++++.+..+..+..+..+.+.+.+..........+.      ..........+.+|++.|+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  347 (417)
T d1pv7a_         286 IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA  347 (417)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred             cccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHH
Confidence            9999999999888888877766554333222211111      1223455678888887653

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=2.3e-15  Score=137.19  Aligned_cols=139  Identities=18%  Similarity=0.133  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccchhHH-HHHHhhh
Q 015396           84 AGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGTASVVIFNTLFGLSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEI  162 (407)
Q Consensus        84 ~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~  162 (407)
                      .+...+...++..++..+.+++.||+|+|+.+..+.++.+++.+...+.++.+.+++..++.|++.+...+. .+++.|.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  340 (417)
T d1pv7a_         261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQ  340 (417)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888999999999999999999999999999999999999999999999999999999998887775 9999999


Q ss_pred             ccccchhhhhHHH-HHHHHHHHHHHHHhhhhhcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH-Hhcccc
Q 015396          163 FREEHQALGLSTV-STAWGIGLIIGPALGGFLAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA-AFWLPE  238 (407)
Q Consensus       163 ~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e  238 (407)
                      +|+++|+++.++. +....+|..++|.++|++.+                +.+++..+++.++..++..+. .+.+++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~----------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE----------------SIGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999985 56778999999999999998                444555557777666655444 444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2e-13  Score=125.97  Aligned_cols=170  Identities=12%  Similarity=0.018  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHhhhhhhchhhhHHHH-HHhhcccccccchhhHHHHHHHHHHHHHHHhhhhhhhcccccCChHHHHHHH
Q 015396           41 TELFSIWIIVLCTALPISSLFPFLYFM-IKDFQIAKREEDIGSYAGYVGSSFMFGRALTSVFWGLVADRYGRKPVIIMGT  119 (407)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~G~l~dr~Grr~~~~~~~  119 (407)
                      +.++......++............|.+ .+.++.+..+      .++..+...++..++.++.|+++||++||+......
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  322 (447)
T d1pw4a_         249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGV  322 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccch------hhhhhhcchhhhhhhhhhhhhhhhhccccccccccc
Confidence            344445555555555555566666654 4567888888      899999999999999999999999999875433332


Q ss_pred             HH---HHHHHHHhh--ccchHHHHHHHHHHHhhhccchhHH-HHHHhhhccccchhhhhHHHHHHHHH-HHHHHHHhhhh
Q 015396          120 AS---VVIFNTLFG--LSVNFWMAVLTRFLLGSLNGLLGPI-KAYACEIFREEHQALGLSTVSTAWGI-GLIIGPALGGF  192 (407)
Q Consensus       120 ~~---~~~~~~~~~--~~~~~~~l~~~r~l~G~~~g~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~  192 (407)
                      ..   ..++.....  ...+.+..++.-++.|++.+...+. ..+..|.+|++.|++++|+.+....+ |..++|.+.++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~  402 (447)
T d1pw4a_         323 FFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  402 (447)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22   222222222  2457777888888888887766664 88999999999999999999877666 56778999999


Q ss_pred             hcCCCCCCCCcccccccccCCCChhHHHHHHHHHHHHHHH
Q 015396          193 LAQPAEKYPNLFSSESLFGKFPYFLPCLCISLFAFGVTIA  232 (407)
Q Consensus       193 l~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (407)
                      +.+                ..+|...+.+.++..++..+.
T Consensus       403 ~~~----------------~~g~~~~~~~~~~~~~~~~~~  426 (447)
T d1pw4a_         403 TVD----------------FFGWDGGFMVMIGGSILAVIL  426 (447)
T ss_dssp             HHH----------------SSCSHHHHHHHHHHHHHHHHH
T ss_pred             HHH----------------HhChHHHHHHHHHHHHHHHHH
Confidence            998                444555556665555554443