Citrus Sinensis ID: 015404

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------

MKILSKILPLLLLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLSIVLETCITNINGILMMG

cHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHccccccccccccEEcccccEEEEEEEEEEEEEEEEccEEEEEcccEEEEEEEccEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEcEEEEEEEEEEEcccEEEEEEEEEEEEEcEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEccccccccEEEEEEEEEEEccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHcccccEEEEcccccccccccHHHHHHcHHHHHcccccccEEEEEEccccEEEEEEccEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEEEEEEEcEEEcc

cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcHHHHHHHHHHHHHHHHHHHcccccccccccEEEcEcEEEEEEEEEEEEEEEEcccccEEccccEEEEEEEcEEEEEEEEEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEEccccccEEEEEcccccEEcEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccEEEEEEcccccccccccEEEcEEEEEEccccccccccccccccccccccccccEEEEEEcHHHHHHHHHHHHHccccEEccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEcccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEccccccc

MKILSKILPLLLLLITSsffssqaqvgasnqeSFTSIIISQTGLDFVKDLLITKAISSiiplalpkieravkipilGNVRMVLSNITIYNidvlssyvkpgdtGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDcgcyvkdisikldggASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLqslpkeipvddhaslnitfvdnplltsssiefDINGLFTarkkasipnyynsnlqppvfcsdqskmlGISLDEAVLNSASALYYDAEFMQwtvdkvpdqsllntagwrfiipqlyrkypnddmnlnislssppvirvaednidatVHADLIIDVlesgevipVACISLSIVLETCITNingilmmg

MKILSKILPLLLLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISsiiplalpkierAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLSIVLETCITNINGILMMG

MkilskilplllllitssffssQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLSIVLETCITNINGILMMG

***LSKILPLLLLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLSIVLETCITNINGILM**

*****KILPLLLLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYY***************MLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLSIVLETCITNINGILMMG

MKILSKILPLLLLLITSSFFSS********QESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLSIVLETCITNINGILMMG

*KILSKILPLLLLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLSIVLETCITNINGI****

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SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		407	2.2.26 [Sep-21-2011]
Q9MAU5		488	Putative BPI/LBP family p	yes	no	0.884	0.737	0.644	1e-139
Q8VYC2		515	Putative BPI/LBP family p	no	no	0.945	0.747	0.429	2e-87
P18428		481	Lipopolysaccharide-bindin	yes	no	0.872	0.738	0.227	8e-20
Q2TBI0		481	Lipopolysaccharide-bindin	yes	no	0.886	0.750	0.229	1e-19
P17213		487	Bactericidal permeability	no	no	0.751	0.628	0.227	1e-15
Q61805		481	Lipopolysaccharide-bindin	yes	no	0.751	0.636	0.219	3e-15
P17453		482	Bactericidal permeability	no	no	0.769	0.649	0.235	2e-12
Q63313		481	Lipopolysaccharide-bindin	yes	no	0.742	0.627	0.222	1e-11
Q6AXU0		482	Bactericidal permeability	no	no	0.732	0.618	0.227	2e-10
P55065		493	Phospholipid transfer pro	no	no	0.754	0.622	0.217	6e-09

>sp\|Q9MAU5\|Y1049_ARATH Putative BPI/LBP family protein At1g04970 OS=Arabidopsis thaliana GN=At1g04970 PE=2 SV=1	Back alignment and function desciption

 Score =  494 bits (1271), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 232/360 (64%), Positives = 300/360 (83%)

Query: 32  ESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNI 91
           +SFTS+++SQ GLDFVK+LL+ KAI+SIIPL +P+IE+++KIP LG + +V+SN+TIY +
Sbjct: 26  DSFTSVLVSQNGLDFVKNLLVNKAIASIIPLQIPRIEKSMKIPFLGGIDVVVSNLTIYEL 85

Query: 92  DVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLT 151
           DV SSYVK G+TGVV VA GTTCNLS NW Y Y+TWL PIEISD GIASVQV+GM++GL+
Sbjct: 86  DVASSYVKLGETGVVIVASGTTCNLSMNWHYSYSTWLPPIEISDQGIASVQVQGMEIGLS 145

Query: 152 LGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLK 211
           LGL++ +G LKLSL +CGC+V+DI+I+L+GGASW YQGM+NAF++QI S+VE+ I KKL 
Sbjct: 146 LGLKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGMVNAFKDQIGSSVESTIAKKLT 205

Query: 212 EGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYY 271
           EG+S LDS LQSLPKEIPVDD+A LN+TF  +P+L +SSI F+I+GLFT  +   +   +
Sbjct: 206 EGVSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSSITFEIDGLFTKGETNQVLKSF 265

Query: 272 NSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFI 331
                  V C   SKMLGIS+DEAV NSA+ALYY+A+F+QW VDK+P+QSLLNTA WRFI
Sbjct: 266 FKKSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFVQWVVDKIPEQSLLNTARWRFI 325

Query: 332 IPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLSI 391
           IPQLY+KYPN DMNLNISLSSPP+++++E  + A V+ADL+I+VL++ +VIPVACISL I
Sbjct: 326 IPQLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNADLVINVLDANQVIPVACISLMI 385

Arabidopsis thaliana (taxid: 3702)

>sp\|Q8VYC2\|Y2070_ARATH Putative BPI/LBP family protein At3g20270 OS=Arabidopsis thaliana GN=At3g20270 PE=2 SV=1	Back alignment and function description

>sp\|P18428\|LBP_HUMAN Lipopolysaccharide-binding protein OS=Homo sapiens GN=LBP PE=1 SV=3	Back alignment and function description

>sp\|Q2TBI0\|LBP_BOVIN Lipopolysaccharide-binding protein OS=Bos taurus GN=LBP PE=2 SV=1	Back alignment and function description

>sp\|P17213\|BPI_HUMAN Bactericidal permeability-increasing protein OS=Homo sapiens GN=BPI PE=1 SV=4	Back alignment and function description

>sp\|Q61805\|LBP_MOUSE Lipopolysaccharide-binding protein OS=Mus musculus GN=Lbp PE=2 SV=2	Back alignment and function description

>sp\|P17453\|BPI_BOVIN Bactericidal permeability-increasing protein OS=Bos taurus GN=BPI PE=2 SV=2	Back alignment and function description

>sp\|Q63313\|LBP_RAT Lipopolysaccharide-binding protein OS=Rattus norvegicus GN=Lbp PE=2 SV=1	Back alignment and function description

>sp\|Q6AXU0\|BPI_RAT Bactericidal permeability-increasing protein OS=Rattus norvegicus GN=Bpi PE=2 SV=1	Back alignment and function description

>sp\|P55065\|PLTP_MOUSE Phospholipid transfer protein OS=Mus musculus GN=Pltp PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		407
224131712		492	predicted protein [Populus trichocarpa]	0.904	0.747	0.746	1e-161
225447199		498	PREDICTED: putative BPI/LBP family prote	0.911	0.744	0.705	1e-150
359807236		441	uncharacterized protein LOC100808142 pre	0.965	0.891	0.624	1e-143
255576107		417	Lipopolysaccharide-binding protein precu	0.759	0.741	0.757	1e-138
18390462		488	lipid-binding serum glycoprotein-like pr	0.884	0.737	0.644	1e-137
21593323		488	unknown [Arabidopsis thaliana]	0.884	0.737	0.641	1e-137
297843298		501	hypothetical protein ARALYDRAFT_887673 [	0.884	0.718	0.641	1e-136
357493077		530	hypothetical protein MTR_5g084690 [Medic	0.918	0.705	0.623	1e-131
449490318		495	PREDICTED: putative BPI/LBP family prote	0.886	0.729	0.638	1e-130
449441668		495	PREDICTED: putative BPI/LBP family prote	0.886	0.729	0.640	1e-130

>gi\|224131712\|ref\|XP_002321159.1\| predicted protein [Populus trichocarpa] gi\|222861932\|gb\|EEE99474.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/371 (74%), Positives = 317/371 (85%), Gaps = 3/371 (0%)

Query: 21  SSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVR 80
           SSQ Q     QE+FT+I+ISQ GLDF+K+LLIT+AISSIIPL LP I +  K P LG V 
Sbjct: 19  SSQIQ---QEQEAFTTIVISQQGLDFLKNLLITQAISSIIPLKLPNITKTAKFPFLGYVH 75

Query: 81  MVLSNITIYNIDVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIAS 140
           M+LSNITIY + VL SYVKPGDTG+  +A GTTCNLS +W YEY TWL P+EISD G AS
Sbjct: 76  MLLSNITIYQLQVLDSYVKPGDTGIAIIASGTTCNLSMDWSYEYNTWLFPVEISDKGHAS 135

Query: 141 VQVEGMQVGLTLGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVS 200
           VQVEGM+VGLTLGL+ Q+GTLKLSL+DCGCYVKDISIKLDGGASWLYQGMI+AFEEQI S
Sbjct: 136 VQVEGMEVGLTLGLKNQEGTLKLSLMDCGCYVKDISIKLDGGASWLYQGMIDAFEEQIGS 195

Query: 201 AVENAITKKLKEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFT 260
           AVENAITK L EGI KLD  LQSLPKEIPVDD AS+N+TFVDNP L++SS+ FDINGLFT
Sbjct: 196 AVENAITKNLGEGILKLDLFLQSLPKEIPVDDDASINVTFVDNPSLSNSSVGFDINGLFT 255

Query: 261 ARKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQ 320
           ARKK  I  YY  N  P V C++ +KMLGISLDEAV NSASALYYDA+FMQW VDK+PDQ
Sbjct: 256 ARKKVPITMYYYENTLPSVLCTEPTKMLGISLDEAVFNSASALYYDAKFMQWIVDKIPDQ 315

Query: 321 SLLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGE 380
           SLLNTAGWRFI+PQLY+KYPNDDMN+N+SLSSPP++R++E N+DATV+ADLIIDVLE+ +
Sbjct: 316 SLLNTAGWRFIVPQLYKKYPNDDMNMNLSLSSPPILRISEHNLDATVYADLIIDVLEADQ 375

Query: 381 VIPVACISLSI 391
           VIPVACISL I
Sbjct: 376 VIPVACISLVI 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225447199\|ref\|XP_002272020.1\| PREDICTED: putative BPI/LBP family protein At3g20270 [Vitis vinifera] gi\|297739241\|emb\|CBI28892.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359807236\|ref\|NP_001241365.1\| uncharacterized protein LOC100808142 precursor [Glycine max] gi\|255641286\|gb\|ACU20920.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|255576107\|ref\|XP_002528948.1\| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis] gi\|223531594\|gb\|EEF33422.1\| Lipopolysaccharide-binding protein precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi|18390462|ref|NP_563724.1| lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana] gi|75264940|sp|Q9MAU5.1|Y1049_ARATH RecName: Full=Putative BPI/LBP family protein At1g04970; Flags: Precursor gi|7211993|gb|AAF40464.1|AC004809_22 ESTs gb|T76367 and gb|AA404955 come from this gene [Arabidopsis thaliana] gi|28393732|gb|AAO42277.1| unknown protein [Arabidopsis thaliana] gi|28973365|gb|AAO64007.1| unknown protein [Arabidopsis thaliana] gi|332189650|gb|AEE27771.1| lipid-binding serum glycoprotein-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|21593323\|gb\|AAM65272.1\| unknown [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297843298\|ref\|XP_002889530.1\| hypothetical protein ARALYDRAFT_887673 [Arabidopsis lyrata subsp. lyrata] gi\|297335372\|gb\|EFH65789.1\| hypothetical protein ARALYDRAFT_887673 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|357493077\|ref\|XP_003616827.1\| hypothetical protein MTR_5g084690 [Medicago truncatula] gi\|355518162\|gb\|AES99785.1\| hypothetical protein MTR_5g084690 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449490318\|ref\|XP_004158569.1\| PREDICTED: putative BPI/LBP family protein At1g04970-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449441668\|ref\|XP_004138604.1\| PREDICTED: putative BPI/LBP family protein At1g04970-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		407
TAIR\|locus:2010592		488	AT1G04970 [Arabidopsis thalian	0.884	0.737	0.644	2e-127
TAIR\|locus:2092334		722	AT3G20270 [Arabidopsis thalian	0.896	0.505	0.436	9.7e-80
UNIPROTKB\|G3N2G9		389	G3N2G9 "Uncharacterized protei	0.805	0.843	0.255	1.1e-22
UNIPROTKB\|F1MNN7		481	LBP "Lipopolysaccharide-bindin	0.882	0.746	0.232	2.2e-22
UNIPROTKB\|P18428		481	LBP "Lipopolysaccharide-bindin	0.879	0.744	0.229	4.3e-22
UNIPROTKB\|Q2TBI0		481	LBP "Lipopolysaccharide-bindin	0.882	0.746	0.230	1.7e-21
UNIPROTKB\|I3L5U6		481	LBP "Uncharacterized protein"	0.879	0.744	0.227	1.1e-19
UNIPROTKB\|F1Q3I0		483	F1Q3I0 "Uncharacterized protei	0.788	0.664	0.237	1.9e-18
UNIPROTKB\|P17453		482	BPI "Bactericidal permeability	0.845	0.713	0.226	2.3e-17
MGI\|MGI:1098776		481	Lbp "lipopolysaccharide bindin	0.766	0.648	0.223	1.2e-16

TAIR\|locus:2010592 AT1G04970 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
 Identities = 232/360 (64%), Positives = 300/360 (83%)

Query:    32 ESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNI 91
             +SFTS+++SQ GLDFVK+LL+ KAI+SIIPL +P+IE+++KIP LG + +V+SN+TIY +
Sbjct:    26 DSFTSVLVSQNGLDFVKNLLVNKAIASIIPLQIPRIEKSMKIPFLGGIDVVVSNLTIYEL 85

Query:    92 DVLSSYVKPGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLT 151
             DV SSYVK G+TGVV VA GTTCNLS NW Y Y+TWL PIEISD GIASVQV+GM++GL+
Sbjct:    86 DVASSYVKLGETGVVIVASGTTCNLSMNWHYSYSTWLPPIEISDQGIASVQVQGMEIGLS 145

Query:   152 LGLETQKGTLKLSLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLK 211
             LGL++ +G LKLSL +CGC+V+DI+I+L+GGASW YQGM+NAF++QI S+VE+ I KKL 
Sbjct:   146 LGLKSDEGGLKLSLSECGCHVEDITIELEGGASWFYQGMVNAFKDQIGSSVESTIAKKLT 205

Query:   212 EGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYY 271
             EG+S LDS LQSLPKEIPVDD+A LN+TF  +P+L +SSI F+I+GLFT  +   +   +
Sbjct:   206 EGVSDLDSFLQSLPKEIPVDDNADLNVTFTSDPILRNSSITFEIDGLFTKGETNQVLKSF 265

Query:   272 NSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGWRFI 331
                    V C   SKMLGIS+DEAV NSA+ALYY+A+F+QW VDK+P+QSLLNTA WRFI
Sbjct:   266 FKKSVSLVICPGNSKMLGISVDEAVFNSAAALYYNADFVQWVVDKIPEQSLLNTARWRFI 325

Query:   332 IPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVLESGEVIPVACISLSI 391
             IPQLY+KYPN DMNLNISLSSPP+++++E  + A V+ADL+I+VL++ +VIPVACISL I
Sbjct:   326 IPQLYKKYPNQDMNLNISLSSPPLVKISEQYVGANVNADLVINVLDANQVIPVACISLMI 385

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008289 "lipid binding" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR\|locus:2092334 AT3G20270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|G3N2G9 G3N2G9 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MNN7 LBP "Lipopolysaccharide-binding protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|P18428 LBP "Lipopolysaccharide-binding protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2TBI0 LBP "Lipopolysaccharide-binding protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|I3L5U6 LBP "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1Q3I0 F1Q3I0 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|P17453 BPI "Bactericidal permeability-increasing protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1098776 Lbp "lipopolysaccharide binding protein" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAU5	Y1049_ARATH	No assigned EC number	0.6444	0.8845	0.7377	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00141080	hypothetical protein (493 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		407
cd00025		223	cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bac	4e-44
cd00026		200	cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bac	2e-22
pfam01273		163	pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family,	1e-18
cd00264		208	cd00264, BPI, BPI/LBP/CETP domain; Bactericidal pe	1e-15
cd00264		208	cd00264, BPI, BPI/LBP/CETP domain; Bactericidal pe	4e-09
pfam02886		238	pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family	2e-08
smart00329		202	smart00329, BPI2, BPI/LBP/CETP C-terminal domain	6e-07

>gnl\|CDD\|237992 cd00025, BPI1, BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

 Score =  152 bits (386), Expect = 4e-44
 Identities = 70/230 (30%), Positives = 98/230 (42%), Gaps = 10/230 (4%)

Query: 34  FTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDV 93
                +S  GL F K   +    + +  L +P I  A+KI +LG  R+ LSN  I  + +
Sbjct: 1   GAVARLSPKGLKFAKQQGLKVLQAELEKLQIPDILGAMKIKLLGKGRVGLSNKEIQELKL 60

Query: 94  LSSYVKPGD-TGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTL 152
            SS +K  +  G+       +  LS  W Y Y        I D G   + VEGM +   L
Sbjct: 61  PSSSIKLVEVKGLDLSISNVSIGLSGVWKYNYR------FILDGGNVELSVEGMNIQADL 114

Query: 153 GLET-QKGTLKLSLVDCGCYVKDISIKLDGGASWL-YQGMINAFEEQIVSAVENAITKKL 210
            L     G  KLSL DC   V  + + L G   WL    M                    
Sbjct: 115 RLGRDPSGRPKLSLSDCSSTVGSLRVHLGGSLGWLAKLFMNFIESLLKKVLKGQLCPVID 174

Query: 211 KEGISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFT 260
              +S L+SLLQ LPK  PVD +A ++ +    P+LT+S ++ DI G F 
Sbjct: 175 ASLVSMLESLLQ-LPKLPPVDSNAGVDYSLTSPPVLTASYLDSDIKGTFQ 223

; Apolar pockets on the concave surface bind a molecule of phosphatidylcholine, primarily by interacting with their acyl chains; this suggests that the pockets may also bind the acyl chains of lipopolysaccharide. Length = 223

>gnl\|CDD\|237993 cd00026, BPI2, BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>gnl\|CDD\|216404 pfam01273, LBP_BPI_CETP, LBP / BPI / CETP family, N-terminal domain	Back alignment and domain information

>gnl\|CDD\|238164 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>gnl\|CDD\|238164 cd00264, BPI, BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>gnl\|CDD\|202449 pfam02886, LBP_BPI_CETP_C, LBP / BPI / CETP family, C-terminal domain	Back alignment and domain information

>gnl\|CDD\|128624 smart00329, BPI2, BPI/LBP/CETP C-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		407
KOG4160		492	consensus BPI/LBP/CETP family protein [Defense mec	100.0
cd00025		223	BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal	100.0
smart00328		225	BPI1 BPI/LBP/CETP N-terminal domain. Bactericidal	100.0
PF02886		238	LBP_BPI_CETP_C: LBP / BPI / CETP family, C-termina	99.97
PF01273		164	LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal	99.96
smart00329		202	BPI2 BPI/LBP/CETP C-terminal domain. Bactericidal	99.94
cd00026		200	BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal	99.93
cd00264		208	BPI BPI/LBP/CETP domain; Bactericidal permeability	99.9
cd00264		208	BPI BPI/LBP/CETP domain; Bactericidal permeability	99.28
PF06585		248	JHBP: Haemolymph juvenile hormone binding protein	98.43
smart00700		225	JHBP Juvenile hormone binding protein domains in i	98.39
PF14613		164	DUF4449: Protein of unknown function (DUF4449)	89.66

>KOG4160 consensus BPI/LBP/CETP family protein [Defense mechanisms]	Back alignment and domain information

Probab=100.00  E-value=1.1e-52  Score=427.66  Aligned_cols=387  Identities=28%  Similarity=0.415  Sum_probs=338.9

Q ss_pred             hHHH-HHHhhcceeeeccccCCCCCCceEEEEeChhHHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEecE
Q 015404            8 LPLL-LLLITSSFFSSQAQVGASNQESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNI   86 (407)
Q Consensus         8 ~~~~-~~~~~~~~~~~~~~~~~~~~~pGi~vrlt~~gl~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~G~v~~~ls~i   86 (407)
                      ++++ -++..+.++....+.+   .+||+++|++++|++|+++.+...+++++.++++||+.+++..++.|++.|.++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~---~~pg~~vri~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~g~~~~~~~~i   81 (492)
T KOG4160|consen    5 LPFLVVLLLLLLLSLLSAAEA---HNPGIVVRINQKALDYVSDEGALVLQAELLRLTIPDIEGSMKSSHIGGGRYTLSSI   81 (492)
T ss_pred             hhHHHHHHHHHhccccchhcc---cCCceEEEechhhHHHHhHHHHHHHHHhhccCCchhhhcccccceecceEEEecce
Confidence            4444 3334444444445555   68999999999999999999999999999999999999999998889999999999


Q ss_pred             EEEEEEeCCeeeee-CCceEEEEEeCceEEEEEEEEEEEeecccceeeeeeEEEEEEEeeEEEEEEEEEE-e-cCCeeEE
Q 015404           87 TIYNIDVLSSYVKP-GDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-T-QKGTLKL  163 (407)
Q Consensus        87 ~I~~~~~p~~~i~~-p~~gi~l~i~~~~i~lsg~~~~~~~~~~~p~~i~~~G~~~~~v~~~~i~~~~~l~-~-~~G~p~v  163 (407)
                      +|.++..+...+++ ++.++.|++.++++.+.+.|.+ .. |++    ..+|++++.++|+++.+.+.+. + .+|+|.+
T Consensus        82 ~i~~~~~~s~~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~-~~~----~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~v  155 (492)
T KOG4160|consen   82 KILRFSVPSSQLSLVPQAGLSWSITNANISLSGRWKA-RT-RFL----ALGGQVDASVKGMDIQINLSLGSDIGDGKPAV  155 (492)
T ss_pred             eEEeccccccceeecCCceEEEEEeeEEEEEeeeeEe-EE-EEE----ecCCeeEEEeecceEEEeeeeeccCCCCccee
Confidence            99999999999999 7789999999999999999999 43 342    3459999999999999999996 5 8999999


Q ss_pred             EEEeeeEEeccEEEEEeCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCCcccccccceEEEeeecc
Q 015404          164 SLVDCGCYVKDISIKLDGGASWLYQGMINAFEEQIVSAVENAITKKLKEGIS-KLDSLLQSLPKEIPVDDHASLNITFVD  242 (407)
Q Consensus       164 ~~~~C~~~i~~v~i~~~g~~s~l~n~f~~~~~~~I~~~l~~~iC~~i~~~i~-~ln~~L~tlp~~~~i~~~~~idy~l~~  242 (407)
                      +...|.+.+.++++.+++..+|+++.|.+.+.+.||..++.++|+++++.++ ++|.++++.|+..++|+...+||++++
T Consensus       156 ~~~~C~~~~~~l~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~c~~~~~~~~~~~~~~l~~~~~~~~~d~~~~Idysl~~  235 (492)
T KOG4160|consen  156 SDSSCSAAISDLHVQMGSLASWLIQLFLNAISDNIRSVLESQICKKIRASVNGDLNSFLQTLPVSISVDSNAGIDYSLLG  235 (492)
T ss_pred             eeecceeEeeeeEeecCCCcHHHHHHHHHHHHHHHHHHHhhhhcHHHHhhhchhhhhhhccCCcceecccccceeeEecc
Confidence            9999999999999988866999999999999999999999999999999995 899999999999999999999999999


Q ss_pred             CCeeecceeEEeeeEEEEe-ccCCCCCCCCCCCCCCCcCCCCCCCeEEEEEchhhHhHHHHHHHhcCceeEEe-c-cCCC
Q 015404          243 NPLLTSSSIEFDINGLFTA-RKKASIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV-D-KVPD  319 (407)
Q Consensus       243 ~P~it~~~i~~~l~g~~~~-~~~~~~~p~~~~~~p~~~~~~~~~~m~~~~lSey~~NS~~~~~~~~g~l~~~i-~-~iP~  319 (407)
                      +|.+|+++++++++|++++ .++...+   ++.|.....++++++|+++++|||++||+++++|++|.|++++ + +.|.
T Consensus       236 ~P~~t~~~i~l~~~G~i~~~~~~~~~~---~~~p~~~~~~~~~~~Mi~i~vSe~v~nSl~~~~~~~~~l~~~i~~~~~~~  312 (492)
T KOG4160|consen  236 PPAITSSYIELDLKGEIFYSLGQVTPP---FPLPIVSPTPLSNSRMIYIYVSEYVFNSLLLHAYQAGLLKLLIDSDKPPV  312 (492)
T ss_pred             CCceecceEEEeeeeeEEeccCCCCCc---ccCCcccccCCCCCceEEEEEhhhhhhHHHHHHHHhCceeEEEcCcCCCc
Confidence            9999999999999999999 4444433   2222222334446899999999999999999999999999999 3 4444


Q ss_pred             Cc--ccccc--hhhhhhHHHHhcCCCCceEEEEeeCCCcEEEEEeCCEEEEEEEEEEEEE-eCCCceeeEEEEEEEEEEe
Q 015404          320 QS--LLNTA--GWRFIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDV-LESGEVIPVACISLSIVLE  394 (407)
Q Consensus       320 ~~--~L~Ts--~~~~~iP~l~~~yPn~~~~l~i~~~~~P~v~i~~~~~~l~~~~~~~~~v-~~~~~~~~lf~l~~~~~~~  394 (407)
                      ++  .++|+  |+|.++|+++++|||+++++++++..+|.|.|++++..+...+.+.+++ .++++..++++++++++. 
T Consensus       313 ~~~~~~~~~~~c~g~~lp~l~~~~Pn~~v~l~i~t~~~P~v~i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~~-  391 (492)
T KOG4160|consen  313 DSLKLLTTSGFCIGDLLPELAEQYPNRTVELEISTLSPPLVVISEQGVDVVLAGSVDVFVVPPSSTNQPLFTLTVDANV-  391 (492)
T ss_pred             ccccccccceeechhhhHHHHHHCCCCeeEEEEEeCCCcEEEEecCCeEEEEecceEEEEecCCcccceeEEEEEEEEE-
Confidence            44  56666  4677999999999999999999999999999999999999999998875 455699999999999999 


Q ss_pred             EEEEEEecceecC
Q 015404          395 TCITNINGILMMG  407 (407)
Q Consensus       395 ~~~~~i~~~kl~g  407 (407)
                      .+++++.++++.|
T Consensus       392 ~~~~~~~~~~l~g  404 (492)
T KOG4160|consen  392 SATLSLSGNKLIG  404 (492)
T ss_pred             EEEEEEeeeeEEE
Confidence            9999999999986

>cd00025 BPI1 BPI/LBP/CETP N-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) N-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>smart00328 BPI1 BPI/LBP/CETP N-terminal domain	Back alignment and domain information

>PF02886 LBP_BPI_CETP_C: LBP / BPI / CETP family, C-terminal domain; InterPro: IPR001124 This entry represents the C-terminal domain found in several lipid-binding serum glycoproteins	Back alignment and domain information

>PF01273 LBP_BPI_CETP: LBP / BPI / CETP family, N-terminal domain; InterPro: IPR017942 This entry represents the N-terminal domain found in several lipid-binding serum glycoproteins	Back alignment and domain information

>smart00329 BPI2 BPI/LBP/CETP C-terminal domain	Back alignment and domain information

>cd00026 BPI2 BPI/LBP/CETP C-terminal domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) C-terminal domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>cd00264 BPI BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative bacteria	Back alignment and domain information

>PF06585 JHBP: Haemolymph juvenile hormone binding protein (JHBP); InterPro: IPR010562 This family consists of several insect specific haemolymph juvenile hormone binding proteins (JHBP)	Back alignment and domain information

>smart00700 JHBP Juvenile hormone binding protein domains in insects	Back alignment and domain information

>PF14613 DUF4449: Protein of unknown function (DUF4449)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		407
1bp1_A		456	Crystal Structure Of Bpi, The Human Bactericidal Pe		2e-17
1ewf_A		456	The 1.7 Angstrom Crystal Structure Of Bpi Length =		8e-17

>pdb|1BP1|A Chain A, Crystal Structure Of Bpi, The Human Bactericidal Permeability-Increasing Protein Length = 456

Back alignment and structure

Iteration: 1

Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 78/338 (23%), Positives = 146/338 (43%), Gaps = 32/338 (9%) Query: 37 IIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSS 96 + ISQ GLD+ + + +P + KI LG ++ I + SS Sbjct: 7 VRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSS 66 Query: 97 YVK--PGDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVG--LTL 152 + P + G+ F +S W + L + G + +EGM + L L Sbjct: 67 QISMVP-NVGLKFSISNANIKISGKW--KAQKRFLKMS----GNFDLSIEGMSISADLKL 119 Query: 153 GLETQKGTLKLSLVDCGCYVKDISIKLDGGA-SWLYQGMINAFEEQIVSAVENAITKKLK 211 G G ++ C ++ + + + WL I F ++I SA+ N + ++ Sbjct: 120 GSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWL----IQLFHKKIESALRNKMNSQVC 175 Query: 212 EGI-----SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKAS 266 E + SKL Q+LP +D A +N V P T+ +++ + G F + + Sbjct: 176 EKVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHN 235 Query: 267 IPNYYNSNLQPPV--FCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS- 321 P + PPV F + +M+ + L + N+A +Y +A ++ T+ D +P +S Sbjct: 236 PPPF-----APPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESK 290 Query: 322 -LLNTAGWRFIIPQLYRKYPNDDMNLNISLSSPPVIRV 358 L T + +P++ +K+PN + +++S S+PP + V Sbjct: 291 FRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSV 328

PyMOL of 1bp1

>pdb|1EWF|A Chain A, The 1.7 Angstrom Crystal Structure Of Bpi Length = 456

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		407
2obd_A		476	Cholesteryl ester transfer protein; lipid transfer	3e-63
1ewf_A		456	BPI, bactericidal/permeability-increasing protein;	8e-61
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens} Length = 476	Back alignment and structure

 Score =  209 bits (533), Expect = 3e-63
 Identities = 55/378 (14%), Positives = 125/378 (33%), Gaps = 16/378 (4%)

Query: 37  IIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSS 96
             I++  L  +         ++    + P I     + +LG V+  L NI I ++ + SS
Sbjct: 13  CRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHLSIASS 72

Query: 97  YVKP-GDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQV-EGMQVGLTLGL 154
            V+      +       +        Y YTT      +        ++   + + +   L
Sbjct: 73  QVELVEAKSIDVSIQDVSVVFKGTLKYGYTTAWW---LGIDQSIDFEIDSAIDLQINTQL 129

Query: 155 ETQKGTLKLSLVDCGCYVKDISIKLDGG--ASWLYQGMINAFEEQIVSAVENAITKKLKE 212
               G ++    DC      + + L G     W+ Q   N     +   ++  I K++  
Sbjct: 130 TADSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEINV 189

Query: 213 GISKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKASIPNYYN 272
             + +   +Q+    I  D    ++I+   +P++T+S +E    G F  +  +       
Sbjct: 190 ISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKDVSEDLPLPT 249

Query: 273 SNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTVDKVPDQSLLNTAGW---R 329
            +          S+ML     E V +S + + +    +  ++     +++L T G+   +
Sbjct: 250 FSPTLL----GDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWGFNTNQ 305

Query: 330 FIIPQLYRKYPNDDMNLNISLSSPPVIRVAEDNIDATVHADLIIDV-LESGEVIPVACIS 388
            I  ++   +P+    + +     P I      +       +         +        
Sbjct: 306 EIFQEVVGGFPS-QAQVTVHCLKMPKISCQNKGVVVDSSVMVKFLFPRPDQQHSVAYTFE 364

Query: 389 LSIVLETCITNINGILMM 406
             IV     +     L +
Sbjct: 365 EDIVTTVQASYSKKKLFL 382

PyMOL of 2obd

>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A* Length = 456	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		407
1ewf_A		456	BPI, bactericidal/permeability-increasing protein;	100.0
2obd_A		476	Cholesteryl ester transfer protein; lipid transfer	100.0
3uv1_A		196	DER F 7 allergen; super-roll; 2.00A {Dermatophagoi	99.1
3e8t_A		220	Takeout 1, takeout-like protein 1; transport prote	98.31
3h4z_A		568	Maltose-binding periplasmic protein fused with Al	97.54
2rck_A		225	JuvenIle hormone binding protein; hemolymph, JHBP-	96.76
2rqf_A		227	HJHBP, hemolymph juvenIle hormone binding protein;	95.0

>1ewf_A BPI, bactericidal/permeability-increasing protein; lipid-binding, lipopolysaccharide-binding, antibiotic; HET: PC1; 1.70A {Homo sapiens} SCOP: d.83.1.1 d.83.1.1 PDB: 1bp1_A*	Back alignment and structure

Probab=100.00  E-value=1.9e-70  Score=558.16  Aligned_cols=367  Identities=19%  Similarity=0.347  Sum_probs=345.5

Q ss_pred             CCceEEEEeChhHHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEecEEEEEEEeCCeeeee-CCceEEEEE
Q 015404           31 QESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVVFVA  109 (407)
Q Consensus        31 ~~pGi~vrlt~~gl~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~G~v~~~ls~i~I~~~~~p~~~i~~-p~~gi~l~i  109 (407)
                      ++||+++|+|++||+|+++++.+++++++++++|||++++++++++|++.|++++++|+++++|.+++++ |++|+++++
T Consensus         1 ~~pGi~vrit~~gL~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~g~~~~~ls~i~I~~~~~~~~~l~~~p~~gi~l~i   80 (456)
T 1ewf_A            1 VNPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSI   80 (456)
T ss_dssp             CCCSEEEEEEHHHHHHHHHHHHHHHHHHHTTCCCCCEEEECSCSSSSSCEEEEEEEEEEEEECCCEEEEEETTTEEEEEE
T ss_pred             CCCcEEEEECHHHHHHHHHHHHHHHHHHhhcCCCCCccCceeccccceEEEEEEEEEEEEEecCCceEEECCCCEEEEEE
Confidence            4899999999999999999999999999999999999999999988999999999999999999999999 999999999


Q ss_pred             eCceEEEEEEEEEEEeecccceeeeeeEEEEEEEeeEEEEEEEEEE-ec-CCeeEEEEEeeeEEeccEEEEEeCC-chhh
Q 015404          110 YGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-TQ-KGTLKLSLVDCGCYVKDISIKLDGG-ASWL  186 (407)
Q Consensus       110 ~~~~i~lsg~~~~~~~~~~~p~~i~~~G~~~~~v~~~~i~~~~~l~-~~-~G~p~v~~~~C~~~i~~v~i~~~g~-~s~l  186 (407)
                      +++++.++|+|+|++  |+    ++++|.+++.++|+++++.++++ +. +|+|+++..+|++++++++++++|+ ++|+
T Consensus        81 ~~~~~~l~~~~~~~~--~~----i~~~G~~~~~v~~v~i~~~~~l~~~~~~G~~~v~~~~C~~~~~~~~i~~~g~~~~~l  154 (456)
T 1ewf_A           81 SNANIKISGKWKAQK--RF----LKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWL  154 (456)
T ss_dssp             EEEEEEEEEEEEEEE--TT----EEEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCEEEEECSCGGGHHH
T ss_pred             eCCcEEEEEEEEEEE--EE----EeeeeEEEEEEeeEEEEEEEEEeecCCCCceEEEEecCceEeceEEEEEeCCchHHH
Confidence            999999999999997  56    68999999999999999999997 77 9999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCcccccccceEEEeeeccCCeeecceeEEeeeEEEEeccCC
Q 015404          187 YQGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTSSSIEFDINGLFTARKKA  265 (407)
Q Consensus       187 ~n~f~~~~~~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~~~~i~~~~~idy~l~~~P~it~~~i~~~l~g~~~~~~~~  265 (407)
                      +|.|.+.+++.|++.+++++|+.+++.+ +++|+.|+++|..+++|+.+.+||+++++|.+++++++++++|+|++.+++
T Consensus       155 ~n~f~~~i~~~i~~~l~~~iC~~i~~~v~~~ln~~L~~lp~~~~id~~~~idysl~~~P~it~~~i~~~l~G~~~~~~~~  234 (456)
T 1ewf_A          155 IQLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHH  234 (456)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTSCSEEECSSSCEEECCBSSCCEECSSEEEEEECCEEECSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceeecCceEEEEEEeecCCcccccEEEEEEEEEEEeCCCC
Confidence            9999999999999999999999999876 679999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCCCCCCCcCCCCCCCeEEEEEchhhHhHHHHHHHhcCceeEEe--ccCCCCc--ccccchhhhhhHHHHhcCCC
Q 015404          266 SIPNYYNSNLQPPVFCSDQSKMLGISLDEAVLNSASALYYDAEFMQWTV--DKVPDQS--LLNTAGWRFIIPQLYRKYPN  341 (407)
Q Consensus       266 ~~~p~~~~~~p~~~~~~~~~~m~~~~lSey~~NS~~~~~~~~g~l~~~i--~~iP~~~--~L~Ts~~~~~iP~l~~~yPn  341 (407)
                      ..+|   +.|+....+++.++|+++++|||++||++|+||++|+|++++  +++|+.+  +|||+|++.++||++++|||
T Consensus       235 ~~~p---~~p~~~~~p~~~~~m~~~~ls~~~~nS~l~~~~~~g~l~~~it~~~ip~~~~~~L~T~~~~~~iP~l~~~yP~  311 (456)
T 1ewf_A          235 NPPP---FAPPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPN  311 (456)
T ss_dssp             CCCS---SCCCCCCCCCCCSSSEEEEEEHHHHHHHHHHHHHTTCSEEEEEGGGSCTTCSCCSBHHHHHTTSSSHHHHSTT
T ss_pred             CCCC---CCCCCcCCCCCCCcEEEEEecHHHHHHHHHHHHhCCcceEEechhhCCCcCCCeeeehhhhhhchHHHHhCCC
Confidence            7765   333222245566899999999999999999999999999998  6899875  89999999999999999999


Q ss_pred             CceEEEEeeCCCcEEEEEeCCEEEEEEEEEEEEEe-CCCceeeEEEEEEEEEEeEEEEEEecceecC
Q 015404          342 DDMNLNISLSSPPVIRVAEDNIDATVHADLIIDVL-ESGEVIPVACISLSIVLETCITNINGILMMG  407 (407)
Q Consensus       342 ~~~~l~i~~~~~P~v~i~~~~~~l~~~~~~~~~v~-~~~~~~~lf~l~~~~~~~~~~~~i~~~kl~g  407 (407)
                      +++++++++.++|.++++++++++++.+++++++. ++++..++|++++++++ ++++++.++||.|
T Consensus       312 ~~l~l~i~~~~~P~v~~~~~~~~v~~~~~v~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~~l~~  377 (456)
T 1ewf_A          312 MKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMHTTG-SMEVSAESNRLVG  377 (456)
T ss_dssp             CBEEEEEECSSCCEEEEETTEEEEECEEEEEEEEECTTSCEEEEEEEEEECCE-EEEEEECSSEEEE
T ss_pred             CeEEEEEEeCCCCEEEEecCCEEEEEEEEEEEEEECCCCceeeEEEEEEEEEE-EEEEEEECCEEEE
Confidence            99999999999999999999999999999999865 67789999999999999 9999999999875

PyMOL of 1ewf

>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo sapiens}	Back alignment and structure

>3uv1_A DER F 7 allergen; super-roll; 2.00A {Dermatophagoides farinae}	Back alignment and structure

>3e8t_A Takeout 1, takeout-like protein 1; transport protein; HET: UQ8; 1.30A {Epiphyas postvittana} PDB: 3e8w_A*	Back alignment and structure

>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}	Back alignment and structure

>2rck_A JuvenIle hormone binding protein; hemolymph, JHBP-fold; HET: NAG; 2.44A {Galleria mellonella}	Back alignment and structure

>2rqf_A HJHBP, hemolymph juvenIle hormone binding protein; HET: JH3; NMR {Bombyx mori} PDB: 3a1z_A 3aos_A* 3aot_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		407
d1ewfa1		217	d.83.1.1 (A:1-217) Bactericidal permeability-incre	1e-44
d1ewfa2		239	d.83.1.1 (A:218-456) Bactericidal permeability-inc	1e-27

>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 217	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (384), Expect = 1e-44
 Identities = 41/215 (19%), Positives = 82/215 (38%), Gaps = 7/215 (3%)

Query: 37  IIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSS 96
           + ISQ GLD+            +  + +P    + KI  LG       ++ I    + SS
Sbjct: 7   VRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSS 66

Query: 97  YVKP-GDTGVVFVAYGTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE 155
            +    + G+ F        +S  W  +       +++S +   S++   +   L LG  
Sbjct: 67  QISMVPNVGLKFSISNANIKISGKWKAQKRF----LKMSGNFDLSIEGMSISADLKLGSN 122

Query: 156 TQKGTLKLSLVDCGCYVKDISIKLDGG-ASWLYQGMINAFEEQIVSAVENAITKKLKEGI 214
              G   ++   C  ++  + + +      WL Q      E  + + + + + +K+   +
Sbjct: 123 PTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSV 182

Query: 215 -SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTS 248
            S+L    Q+LP    +D  A +N   V  P  T+
Sbjct: 183 SSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTA 217

PyMOL of d1ewfa1

>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]} Length = 239	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		407
d1ewfa1		217	Bactericidal permeability-increasing protein, BPI	100.0
d1ewfa2		239	Bactericidal permeability-increasing protein, BPI	99.97

>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Aha1/BPI domain-like
superfamily: Bactericidal permeability-increasing protein, BPI
family: Bactericidal permeability-increasing protein, BPI
domain: Bactericidal permeability-increasing protein, BPI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-46  Score=343.36  Aligned_cols=211  Identities=20%  Similarity=0.362  Sum_probs=202.9

Q ss_pred             CceEEEEeChhHHHHHHHHHHHHHHhhcCCCCCCCccceeeeceeeeEEEEEecEEEEEEEeCCeeeee-CCceEEEEEe
Q 015404           32 ESFTSIIISQTGLDFVKDLLITKAISSIIPLALPKIERAVKIPILGNVRMVLSNITIYNIDVLSSYVKP-GDTGVVFVAY  110 (407)
Q Consensus        32 ~pGi~vrlt~~gl~y~~~~~~~~l~~~l~~~~iPdi~~~~~~~~~G~v~~~ls~i~I~~~~~p~~~i~~-p~~gi~l~i~  110 (407)
                      |||+++|+|||||||+++++.+++++++.++++||++++++++++|+++|+++|++|+++++|++++++ |++|++|+++
T Consensus         2 nPGi~vrit~kgL~y~~~~~~~~l~~~l~~i~iPdi~~~~~i~~~G~v~y~ls~i~I~~~~~~~s~l~~~p~~gi~~~is   81 (217)
T d1ewfa1           2 NPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSIS   81 (217)
T ss_dssp             CCSEEEEEEHHHHHHHHHHHHHHHHHHHTTCCCCCEEEECSCSSSSSCEEEEEEEEEEEEECCCEEEEEETTTEEEEEEE
T ss_pred             CCcEEEEECHHHHHHHHHHHHHHHHHHhhcCCCCCccCcccccccceEEEEEEeeEEEEEecCCceeEecCCCeEEEEEe
Confidence            899999999999999999999999999999999999999998888999999999999999999999999 9999999999


Q ss_pred             CceEEEEEEEEEEEeecccceeeeeeEEEEEEEeeEEEEEEEEEE-e-cCCeeEEEEEeeeEEeccEEEEEeCC-chhhH
Q 015404          111 GTTCNLSANWFYEYTTWLLPIEISDHGIASVQVEGMQVGLTLGLE-T-QKGTLKLSLVDCGCYVKDISIKLDGG-ASWLY  187 (407)
Q Consensus       111 ~~~i~lsg~~~~~~~~~~~p~~i~~~G~~~~~v~~~~i~~~~~l~-~-~~G~p~v~~~~C~~~i~~v~i~~~g~-~s~l~  187 (407)
                      +++++++|+|+|++  |+    ++++|++++.++++++++.++++ + .+|+|++++.+|++++++++++++|+ ++|+|
T Consensus        82 ~~~~~l~g~w~~~~--~~----i~~~G~~~~~v~~~~i~~~~~l~~d~~~G~~~v~~~~C~~~i~~v~i~~~gg~~swl~  155 (217)
T d1ewfa1          82 NANIKISGKWKAQK--RF----LKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLI  155 (217)
T ss_dssp             EEEEEEEEEEEEEE--TT----EEEEEEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCEEEEECSCGGGHHHH
T ss_pred             cCeEEEEEEEEEEE--EE----EEEeeEEEEEEEEEEEEEEEEEEeeCCCCcEEEEEccCceEeeeEEEEECCCchHHHH
Confidence            99999999999996  56    68999999999999999999996 6 67999999999999999999999988 89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCCcccccccceEEEeeeccCCeeec
Q 015404          188 QGMINAFEEQIVSAVENAITKKLKEGI-SKLDSLLQSLPKEIPVDDHASLNITFVDNPLLTS  248 (407)
Q Consensus       188 n~f~~~~~~~I~~~l~~~iC~~i~~~i-~~ln~~L~tlp~~~~i~~~~~idy~l~~~P~it~  248 (407)
                      |+|.+.+++.+|+.+++++|+++++.+ +++|++|+++|+.+|+|+.+.+||+|+++|.+|+
T Consensus       156 n~f~~~i~~~ir~~l~~~iC~~i~~~i~~~ln~~L~~lp~~~~id~~~~idysl~~~P~~ts  217 (217)
T d1ewfa1         156 QLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYFQTLPVMTKIDSVAGINYGLVAPPATTA  217 (217)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTSCSEEECSSSCEEECCBSSCCEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeeeecCCceEEEEEeeCCCccCC
Confidence            999999999999999999999999999 5799999999999999999999999999999984

PyMOL of d1ewfa1

>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing protein, BPI {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure