Citrus Sinensis ID: 015410

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MQQQRMMNSEGELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDMLSSSLQSSLSNLSCSPSSPSDLPEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKVHIQYCALTSDFFISLVYFSG
ccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccEEEEcccccccccEEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccccccccHHHHcccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccEEEEEEEcccccccccccEEEEccccccccccHHHHHHHHHccccccccEEcccccccccccccccccccccccccccccccccEEEEEEEcc
ccccccccccccEEEEEEEEEccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHcccccccccHHHccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcHccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHcHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccEEEEEEEEccEEEEEEcccccEEEEEEccccccccccEEEEEEccccccccHHHHHHHHHHHccccccEEEEEEEEEEEEEEEccccEEcccHHHccHHHHHHcccccccccc
mqqqrmmnsegelkvsfgyqcnghrdgscevpdgynivpgikiqktssfsclsgaalsanATLANTNicngligaeilpsldspnsfrrvpssptlsrLDMLSSSLQsslsnlscspsspsdlpeydtcvsklmiapcrsegilngMEVQvaggaageDRVQAVCSEEHGLLFCAiydgfngrdaADFLAGTLYESVMFYSNLFEweskidatrapddsefgghlqyifederkdsaansfanaslhpereissSFQHAVLDSLQRALNQAENDFLHMVEQemedrpdlvsvGSCVLLVLLhgndlytlnlgdsrAVLATYdevndlsghKRLKAIqlteshtvenedERTRllsehpddpmpilagkvkgkLKVTRAFGVGYLKKVHIQYCALTSDFFISLVYFSG
mqqqrmmnsegELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDMLSSSLQSSLSNLSCSPSSPSDLPEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKaiqlteshtvenedertrllsehpddpmpilagkvkgklKVTRAFGVGYLKKVHIQYCALTSDFFISLVYFSG
MQQQRMMNSEGELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSClsgaalsanatlantnICNGLIGAEILPSLDSPNSFRRVPSSPTlsrldmlssslqsslsnlscspsspsdlpEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDlvsvgscvllvllHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKVHIQYCALTSDFFISLVYFSG
**************VSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILP**********************************************YDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDAT*******FGGHLQYIF*********************************************FLHMV*******PDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAI***************************ILAGKVKGKLKVTRAFGVGYLKKVHIQYCALTSDFFISLVYF**
*************KVSFGYQCNGH******************************************N*******************************************************************************MEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPER********AVLDSLQRALNQAENDFLHMVE*********VSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKVHIQYCALTSDFFISLVYFSG
**********GELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDML*********************PEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTES**********RLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKVHIQYCALTSDFFISLVYFSG
*********EGELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILPSLDSP************************************SDLPEYDTCVSKLMIA*CRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKVHIQYCALTSDFFISLVYF*G
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oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
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MQQQRMMNSEGELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNICNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDMLSSSLQSSLSNLSCSPSSPSDLPEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVxxxxxxxxxxxxxxxxxxxxxEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKVHIQYCALTSDFFISLVYFSG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
Q9LUS8 493 Probable protein phosphat yes no 0.862 0.711 0.605 1e-112
Q7XVF9 520 Probable protein phosphat yes no 0.894 0.7 0.5 3e-96
Q84T94 639 Protein phosphatase 2C 35 no no 0.574 0.366 0.371 2e-37
Q9LQN6 662 Probable protein phosphat no no 0.592 0.364 0.341 4e-35
Q6ZGY0 596 Probable protein phosphat no no 0.592 0.404 0.354 2e-34
A3AZ89 593 Putative protein phosphat no no 0.513 0.352 0.393 2e-34
Q9ZV25 654 Probable protein phosphat no no 0.572 0.356 0.327 2e-34
Q9LZ86 674 Probable protein phosphat no no 0.584 0.353 0.32 2e-33
Q9SR24 650 Probable protein phosphat no no 0.599 0.375 0.328 1e-32
Q10NB9 631 Probable protein phosphat no no 0.574 0.370 0.363 2e-32
>sp|Q9LUS8|P2C40_ARATH Probable protein phosphatase 2C 40 OS=Arabidopsis thaliana GN=At3g16560 PE=2 SV=1 Back     alignment and function desciption
 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/380 (60%), Positives = 277/380 (72%), Gaps = 29/380 (7%)

Query: 11  GELKVSFGYQCNGHRDGSCE--VPDGYNIVPGIKIQKTSSFSCLSGAALSANATLANTNI 68
           GE+++SFGYQCN  + G  E  + DG  ++ G ++QKTSSFSCLSGAALS N TLANTNI
Sbjct: 9   GEIEISFGYQCNNKKIGIPEDKIADGREVLGGFRLQKTSSFSCLSGAALSGNPTLANTNI 68

Query: 69  CNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDMLSSSLQSSLSNLSCSPSSPSDLPEYDT 128
           CNG+IG+EILPSLDSP SFR+VPSSP LS+LD+LS SL  S+ +LSCS S+    PE ++
Sbjct: 69  CNGVIGSEILPSLDSPKSFRKVPSSPALSKLDILSPSLHGSMVSLSCSSSTSPSPPEPES 128

Query: 129 CVSKLMIAPCR-SEG-ILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAA 186
           C    M +P   +EG +L+ MEVQVAGGAAGEDRVQAVCSEE+G LFCAIYDGFNGRDAA
Sbjct: 129 CYLTSMSSPSSVNEGFLLSAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAA 188

Query: 187 DFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFEDERKDSAANSFANASL 246
           DFLA TLYES++F+  L + + K   T++ DD E    L+ +      D ++        
Sbjct: 189 DFLACTLYESIVFHLQLLDRQMK--QTKSDDDGE---KLELLSNISNVDYSSTDL----- 238

Query: 247 HPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDL 306
                    F+  VLD L RAL QAE DFL MVEQEME+RPDLVSVGSCVL+ LL G DL
Sbjct: 239 ---------FRQGVLDCLNRALFQAETDFLRMVEQEMEERPDLVSVGSCVLVTLLVGKDL 289

Query: 307 YTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILA 366
           Y LNLGDSRAVLATY+      G+K+L+A+QLTE HTV+NE E  RLLSEH DDP  ++ 
Sbjct: 290 YVLNLGDSRAVLATYN------GNKKLQAVQLTEDHTVDNEVEEARLLSEHLDDPKIVIG 343

Query: 367 GKVKGKLKVTRAFGVGYLKK 386
           GK+KGKLKVTRA GVGYLKK
Sbjct: 344 GKIKGKLKVTRALGVGYLKK 363

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q7XVF9|P2C39_ORYSJ Probable protein phosphatase 2C 39 OS=Oryza sativa subsp. japonica GN=Os04g0403701 PE=2 SV=2 Back     alignment and function description
>sp|Q84T94|P2C35_ORYSJ Protein phosphatase 2C 35 OS=Oryza sativa subsp. japonica GN=XB15 PE=1 SV=1 Back     alignment and function description
>sp|Q9LQN6|P2C04_ARATH Probable protein phosphatase 2C 4 OS=Arabidopsis thaliana GN=PLL5 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZGY0|P2C26_ORYSJ Probable protein phosphatase 2C 26 OS=Oryza sativa subsp. japonica GN=Os02g0690500 PE=2 SV=1 Back     alignment and function description
>sp|A3AZ89|P2C46_ORYSJ Putative protein phosphatase 2C 46 OS=Oryza sativa subsp. japonica GN=Os05g0111800 PE=3 SV=2 Back     alignment and function description
>sp|Q9ZV25|P2C23_ARATH Probable protein phosphatase 2C 23 OS=Arabidopsis thaliana GN=PLL4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LZ86|P2C66_ARATH Probable protein phosphatase 2C 66 OS=Arabidopsis thaliana GN=PLL2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SR24|P2C36_ARATH Probable protein phosphatase 2C 36 OS=Arabidopsis thaliana GN=PLL3 PE=2 SV=1 Back     alignment and function description
>sp|Q10NB9|P2C31_ORYSJ Probable protein phosphatase 2C 31 OS=Oryza sativa subsp. japonica GN=Os03g0275100 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
255551731495 protein phosphatase-2c, putative [Ricinu 0.953 0.783 0.670 1e-147
356519974493 PREDICTED: probable protein phosphatase 0.901 0.744 0.659 1e-139
297736872503 unnamed protein product [Vitis vinifera] 0.899 0.727 0.676 1e-132
388520973 513 unknown [Lotus japonicus] 0.936 0.742 0.652 1e-131
224118948 511 predicted protein [Populus trichocarpa] 0.926 0.737 0.663 1e-128
449432842 521 PREDICTED: probable protein phosphatase 0.928 0.725 0.649 1e-123
356532575488 PREDICTED: probable protein phosphatase 0.869 0.725 0.657 1e-123
449527205 521 PREDICTED: LOW QUALITY PROTEIN: probable 0.928 0.725 0.647 1e-122
224107337503 predicted protein [Populus trichocarpa] 0.906 0.733 0.671 1e-121
357478763503 hypothetical protein MTR_4g119830 [Medic 0.918 0.743 0.628 1e-119
>gi|255551731|ref|XP_002516911.1| protein phosphatase-2c, putative [Ricinus communis] gi|223543999|gb|EEF45525.1| protein phosphatase-2c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 271/404 (67%), Positives = 319/404 (78%), Gaps = 16/404 (3%)

Query: 1   MQQQRMMNSEGELKVSFGYQCNGHRDGSCEVPDGYNIVPGIKIQKTSSFSCLSGAALSAN 60
           M+    +N EGE+K+SFGY CNGH D S  +PDG+      K+ + SSFSCLSGAALSAN
Sbjct: 1   MRGASSINPEGEIKISFGYHCNGHGDSSWMLPDGHENPQSTKLPRNSSFSCLSGAALSAN 60

Query: 61  ATLANTNICNGLIGAEILPSLDSPNSFRRVPSSPTLSRLDMLSSSLQSSLSNLSCSPSSP 120
           ATLANTNICNG+IGAEILPSLDSPNSFR+VPSSPTLSRLDML SSLQSS+S LSC+PS+P
Sbjct: 61  ATLANTNICNGVIGAEILPSLDSPNSFRKVPSSPTLSRLDMLPSSLQSSMSYLSCTPSTP 120

Query: 121 SDLPEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGF 180
           S  P+YD+ + K M AP +S+  LN MEVQVAGGAAGEDRVQAVCSEE+G LFCAIYDGF
Sbjct: 121 SP-PDYDSYL-KPMSAPSKSDSFLNAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGF 178

Query: 181 NGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFED--------- 231
           NGRDAADFLAGTLYE+++F++N  +WESK D   A +    GG +Q  FE          
Sbjct: 179 NGRDAADFLAGTLYETIIFHTNSLDWESKQDVVTASNGLCLGGSIQCAFEGGSHSPGEKT 238

Query: 232 ----ERKDSAANSFANASLHPEREISS-SFQHAVLDSLQRALNQAENDFLHMVEQEMEDR 286
                 KDS+ + FA   +  + E SS SF+H VLDSLQRAL+QAENDFL+MVEQEMEDR
Sbjct: 239 HSGGYNKDSSLDRFAKDGICSKLETSSDSFRHEVLDSLQRALSQAENDFLNMVEQEMEDR 298

Query: 287 PDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVEN 346
           PDLVSVGSCVL+VLLHG DLYTLNLGDSRAVLATY+  N+++ +++LKA+QLT+ HTV+N
Sbjct: 299 PDLVSVGSCVLVVLLHGTDLYTLNLGDSRAVLATYNGDNEVNRYEQLKAVQLTDCHTVDN 358

Query: 347 EDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKVHIQ 390
           E ERT L SEHPDDP  +L GKVKGKLKVTRAFGVGYLKK ++ 
Sbjct: 359 EIERTTLCSEHPDDPATVLGGKVKGKLKVTRAFGVGYLKKKNLN 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356519974|ref|XP_003528643.1| PREDICTED: probable protein phosphatase 2C 40-like [Glycine max] Back     alignment and taxonomy information
>gi|297736872|emb|CBI26073.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388520973|gb|AFK48548.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224118948|ref|XP_002331343.1| predicted protein [Populus trichocarpa] gi|222873376|gb|EEF10507.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449432842|ref|XP_004134207.1| PREDICTED: probable protein phosphatase 2C 40-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356532575|ref|XP_003534847.1| PREDICTED: probable protein phosphatase 2C 40-like [Glycine max] Back     alignment and taxonomy information
>gi|449527205|ref|XP_004170603.1| PREDICTED: LOW QUALITY PROTEIN: probable protein phosphatase 2C 40-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224107337|ref|XP_002314451.1| predicted protein [Populus trichocarpa] gi|222863491|gb|EEF00622.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357478763|ref|XP_003609667.1| hypothetical protein MTR_4g119830 [Medicago truncatula] gi|355510722|gb|AES91864.1| hypothetical protein MTR_4g119830 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
TAIR|locus:2089293493 AT3G16560 [Arabidopsis thalian 0.511 0.421 0.495 3.9e-87
TAIR|locus:2041444 856 POL "poltergeist" [Arabidopsis 0.149 0.071 0.483 2.3e-25
TAIR|locus:2062481 783 PLL1 "poltergeist like 1" [Ara 0.135 0.070 0.563 2.9e-25
TAIR|locus:2026605 662 PLL5 "pol-like 5" [Arabidopsis 0.437 0.268 0.306 9e-25
TAIR|locus:2053265 654 PLL4 "poltergeist like 4" [Ara 0.420 0.261 0.335 3.7e-24
TAIR|locus:2083539 650 PLL3 "pol-like 3" [Arabidopsis 0.147 0.092 0.483 6.2e-23
TAIR|locus:2180152 674 PLL2 "pol-like 2" [Arabidopsis 0.154 0.093 0.476 8.3e-16
TAIR|locus:2091265 385 AT3G12620 [Arabidopsis thalian 0.530 0.561 0.271 9.4e-12
TAIR|locus:2086097 384 AT3G17090 [Arabidopsis thalian 0.506 0.536 0.258 3.6e-11
TAIR|locus:2097238 384 AT3G55050 [Arabidopsis thalian 0.513 0.544 0.278 6.6e-10
TAIR|locus:2089293 AT3G16560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 500 (181.1 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
 Identities = 106/214 (49%), Positives = 132/214 (61%)

Query:    11 GELKVSFGYQCNGHRDGSCE--VPDGYNIVPGIKIQKTSSFSCXXXXXXXXXXXXXXXXI 68
             GE+++SFGYQCN  + G  E  + DG  ++ G ++QKTSSFSC                I
Sbjct:     9 GEIEISFGYQCNNKKIGIPEDKIADGREVLGGFRLQKTSSFSCLSGAALSGNPTLANTNI 68

Query:    69 CNGLIGAEILPSLDSPNSFRRVPSSPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEYDT 128
             CNG+IG+EILPSLDSP SFR+VPSSP                              E ++
Sbjct:    69 CNGVIGSEILPSLDSPKSFRKVPSSPALSKLDILSPSLHGSMVSLSCSSSTSPSPPEPES 128

Query:   129 CVSKLMIAPCR-SEG-ILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAA 186
             C    M +P   +EG +L+ MEVQVAGGAAGEDRVQAVCSEE+G LFCAIYDGFNGRDAA
Sbjct:   129 CYLTSMSSPSSVNEGFLLSAMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAA 188

Query:   187 DFLAGTLYESVMFYSNLFEWESKIDATRAPDDSE 220
             DFLA TLYES++F+  L + + K   T++ DD E
Sbjct:   189 DFLACTLYESIVFHLQLLDRQMK--QTKSDDDGE 220
GO:0003824 "catalytic activity" evidence=IEA
GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
TAIR|locus:2041444 POL "poltergeist" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062481 PLL1 "poltergeist like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026605 PLL5 "pol-like 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053265 PLL4 "poltergeist like 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083539 PLL3 "pol-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180152 PLL2 "pol-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091265 AT3G12620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086097 AT3G17090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097238 AT3G55050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LUS8P2C40_ARATH3, ., 1, ., 3, ., 1, 60.60520.86240.7119yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019775001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (547 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 1e-26
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 2e-25
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 8e-15
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 2e-13
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information 
 Score =  106 bits (267), Expect = 1e-26
 Identities = 60/253 (23%), Positives = 89/253 (35%), Gaps = 75/253 (29%)

Query: 156 AGEDRVQAVCSE-EHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATR 214
             ED V    +          ++DG  G  A +F +  L E +                 
Sbjct: 14  TNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEEL----------------- 56

Query: 215 APDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAEND 274
                                          L    E  +  +  + ++L++A  +A+ +
Sbjct: 57  -------------------------------LEELEETLTLSEEDIEEALRKAFLRADEE 85

Query: 275 FLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLK 334
            L   +    D PD    G+  ++ L+ GN LY  N+GDSRAVL    E           
Sbjct: 86  ILEEAQ----DEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGE----------- 130

Query: 335 AIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKK-----VHI 389
           A+QLT+ H   NE+ER R+          +  G+V G L VTRA G   LK        +
Sbjct: 131 AVQLTKDHKPVNEEERERIEKAGGR----VSNGRVPGVLAVTRALGDFDLKPGVSAEPDV 186

Query: 390 QYCALTS--DFFI 400
               LT   DF I
Sbjct: 187 TVVKLTEDDDFLI 199

Length = 254
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 100.0
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 100.0
KOG0698330 consensus Serine/threonine protein phosphatase [Si 100.0
PLN03145365 Protein phosphatase 2c; Provisional 99.97
KOG0697 379 consensus Protein phosphatase 1B (formerly 2C) [Si 99.97
PTZ00224 381 protein phosphatase 2C; Provisional 99.96
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 99.93
KOG0699 542 consensus Serine/threonine protein phosphatase [Si 99.92
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.88
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.88
PRK14559645 putative protein serine/threonine phosphatase; Pro 99.83
KOG1323493 consensus Serine/threonine phosphatase [Signal tra 99.76
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.02
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 98.89
KOG1379330 consensus Serine/threonine protein phosphatase [Si 98.74
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 98.66
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 96.46
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 95.62
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=7.2e-57  Score=446.40  Aligned_cols=228  Identities=39%  Similarity=0.619  Sum_probs=202.3

Q ss_pred             cccccceeecCCCCCCceEEEEecCCCCeEEEEEEcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccccCCCCCCcccC
Q 015410          143 ILNGMEVQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFG  222 (407)
Q Consensus       143 ~~~~~~~q~a~g~~~EDR~~a~~~~~~g~lffGVFDGHgG~~aA~~ls~~L~~~I~~~l~~l~~~~~~~~~~~~~~~~~~  222 (407)
                      .+....+||+++++.|||+.+.+.++++|+||||||||||++|++|++++||.||..+|++++|+.++.           
T Consensus        71 v~~~n~~q~a~~~~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~-----------  139 (390)
T KOG0700|consen   71 VLQANNLQEAQGKAEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEER-----------  139 (390)
T ss_pred             hhhhhhhhhhcCCcccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccc-----------
Confidence            444558999999999999999999999999999999999999999999999999999999999987762           


Q ss_pred             Cccchhhhh-hhhhhhhhHHhhhcCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceEEEEEE
Q 015410          223 GHLQYIFED-ERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLL  301 (407)
Q Consensus       223 ~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~aL~~AF~~lD~di~~~~~~~~~~~~~~a~sGSTAlvalI  301 (407)
                          +..+. ..+.+.+..||+.+ ++.    .+++..+.+||.+||+++|++|+.++++.+..+|++|.|||||||++|
T Consensus       140 ----f~~e~~~~~~~~~~~~~~~~-~~~----~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i  210 (390)
T KOG0700|consen  140 ----FPSEYKSEELEHLLVYWKQL-SSA----DQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLI  210 (390)
T ss_pred             ----cccccccchhhhhhhhhhcc-ccc----CccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEE
Confidence                11111 23456778888888 432    233568999999999999999999999999999999999999999999


Q ss_pred             eCCeEEEEEeCCceEEEEecCCcccccCCCc-eeEEecCCCCCCCCHHHHHHHHhcCCCCCCceecC--cccCccccccc
Q 015410          302 HGNDLYTLNLGDSRAVLATYDEVNDLSGHKR-LKAIQLTESHTVENEDERTRLLSEHPDDPMPILAG--KVKGKLKVTRA  378 (407)
Q Consensus       302 ~~~~L~VANvGDSRAVL~~~~~~~~~~~~g~-~~a~~LT~DH~~~n~~E~~RI~~~hP~~~~vi~~g--RV~G~LavTRA  378 (407)
                      ++.+|||||+||||||||+..      ++|+ |.|+|||.||+++|++|++||+++||+++.+|.++  ||+|.|+||||
T Consensus       211 ~~~~LyVaN~GDSRAVLG~~~------~~~~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRA  284 (390)
T KOG0700|consen  211 KGGDLYVANVGDSRAVLGVVE------NNGSWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRA  284 (390)
T ss_pred             eCCeEEEEecCcchhhhceec------CCCCeEEEEecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeee
Confidence            999999999999999999998      5666 79999999999999999999999999999888777  99999999999


Q ss_pred             ccCCccccccceecccCC
Q 015410          379 FGVGYLKKVHIQYCALTS  396 (407)
Q Consensus       379 fGD~~lK~~~l~~~~l~~  396 (407)
                      |||++|||++++.+||..
T Consensus       285 fGd~~lK~~~~n~e~l~~  302 (390)
T KOG0700|consen  285 FGDGYLKWPEFNQEPLLE  302 (390)
T ss_pred             ccceeecchhhccchhHh
Confidence            999999999999766664

>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
2pnq_A 467 Crystal Structure Of Pyruvate Dehydrogenase Phospha 4e-04
3mq3_A 467 Crystal Structure Of Native Bovine Pdp1c Length = 4 6e-04
>pdb|2PNQ|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Phosphatase 1 (Pdp1) Length = 467 Back     alignment and structure 
Iteration: 1

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 303 GNDLYTLNLGDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPM 362
           G DL+  N GDSRA+L   +E    S      A+ L+  H  +NE E  RL  EHP +  
Sbjct: 210 GVDLHVANTGDSRAMLGVQEEDGSWS------AVTLSNDHNAQNERELQRLKLEHPKNEA 263
Query: 363 P--ILAGKVKGKLKVTRAFG 380
              +   ++ G L   RAFG
Sbjct: 264 KSVVKQDRLLGLLMPFRAFG 283
>pdb|3MQ3|A Chain A, Crystal Structure Of Native Bovine Pdp1c Length = 467 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 6e-44
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 5e-29
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 5e-28
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 2e-21
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 4e-17
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 5e-16
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 9e-16
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 2e-15
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 5e-15
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 8e-14
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 1e-13
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 4e-13
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 2e-04
1txo_A237 Putative bacterial enzyme; serine/threonine protei 6e-04
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Length = 467 Back     alignment and structure
 Score =  158 bits (399), Expect = 6e-44
 Identities = 53/252 (21%), Positives = 91/252 (36%), Gaps = 20/252 (7%)

Query: 149 VQVAGGAAGEDRVQAVCSEEHGLLFCAIYDGFNGRDAADFLAGTLYESVMFY----SNLF 204
            ++   A  EDR  A    +   +   ++DG  G   +  ++  L+  +         L 
Sbjct: 44  NRLPANAPIEDRRSATTCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLL 103

Query: 205 EWESKIDATRA--PDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLD 262
           E E+ +++ RA  P          Y  ++  K              +     S    V +
Sbjct: 104 EIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNGLRTYWQELIDLNTGESADIDVKE 163

Query: 263 SLQRALNQAENDFLHMVEQEMEDR------PDLVSVGSCVLLVLLHGNDLYTLNLGDSRA 316
           +L  A  + +ND     +    +         +   G+   +  + G DL+  N GDSRA
Sbjct: 164 ALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRA 223

Query: 317 VLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMP--ILAGKVKGKLK 374
           +L   +E           A+ L+  H  +NE E  RL  EHP +     +   ++ G L 
Sbjct: 224 MLGVQEEDG------SWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLM 277

Query: 375 VTRAFGVGYLKK 386
             RAFG    K 
Sbjct: 278 PFRAFGDVKFKW 289
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Length = 401 Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Length = 358 Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324 Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
2pnq_A 467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 100.0
2irm_A 358 Mitogen-activated protein kinase kinase kinase 7 i 99.98
2j4o_A 401 Mitogen-activated protein kinase kinase kinase 7-i 99.97
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 99.97
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 99.97
1a6q_A 382 Phosphatase 2C; catalytic mechanism, metalloenzyme 99.97
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 99.97
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 99.96
3d8k_A 377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 99.96
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 99.96
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 99.96
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 99.96
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 99.95
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 99.9
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 99.89
1txo_A237 Putative bacterial enzyme; serine/threonine protei 99.88
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 99.83
3rnr_A211 Stage II sporulation E family protein; structural 99.83
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 98.4
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 98.3
3f79_A255 Probable two-component response regulator; adaptor 97.64
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 95.93
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 89.67
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
Probab=100.00  E-value=6e-42  Score=355.26  Aligned_cols=266  Identities=20%  Similarity=0.163  Sum_probs=193.9

Q ss_pred             CCCChhhcccccccccccccccCCC--CCCCCCccccccccccCCCCcccCcccccceeecCCCCCCceEEEEecCCCCe
Q 015410           94 PTLSRLDMLSSSLQSSLSNLSCSPS--SPSDLPEYDTCVSKLMIAPCRSEGILNGMEVQVAGGAAGEDRVQAVCSEEHGL  171 (407)
Q Consensus        94 p~ls~~~v~~~l~~~e~s~~~~~~~--~~~~~~~~d~~~l~s~n~P~~~~~~~~~~~~q~a~g~~~EDR~~a~~~~~~g~  171 (407)
                      ..|||.+|+.+|+++|+|+.+....  .++.+.+|++++.+. +.++                   ||++.+......++
T Consensus         7 ~~l~~~~~~~~l~~~e~s~~~~~~~g~~~~~v~~~~s~~g~~-R~~n-------------------ED~~~v~~~~~~~~   66 (467)
T 2pnq_A            7 FYLTPPQVNSILKANEYSFKVPEFDGKNVSSILGFDSNRLPA-NAPI-------------------EDRRSATTCLQTRG   66 (467)
T ss_dssp             --CCHHHHHHHHHHHCEEEECCCCTTTCCCSEEEEEEEEECC-SSSC-------------------CEEEEEEEESSSSC
T ss_pred             ccCCHHHHHHHHhccCeeEEecCCCCCcccceEEEEeeccCC-CCCC-------------------CCceeeeeccCCCc
Confidence            4599999999999999996553221  245699999998877 6666                   99987654333344


Q ss_pred             EEEEEEcCCCChHHHHHHHHHHHHHHHHhhh--hhhhh----hccccCCCCCCcccCCccchhh--hhhhhhhhhhHHhh
Q 015410          172 LFCAIYDGFNGRDAADFLAGTLYESVMFYSN--LFEWE----SKIDATRAPDDSEFGGHLQYIF--EDERKDSAANSFAN  243 (407)
Q Consensus       172 lffGVFDGHgG~~aA~~ls~~L~~~I~~~l~--~l~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~  243 (407)
                      .||||||||||+.||+|++++|+.+|...+.  ..+.+    .+...+..+.++++++..++..  ....|..++..||+
T Consensus        67 ~lfgVfDGHGG~~aa~~as~~L~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~  146 (467)
T 2pnq_A           67 MLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNGLRTYWQ  146 (467)
T ss_dssp             EEEEEEEEESSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHTTTC----CCCCEEECCCTTCCCCSTTHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhccccccccccccccccccchhhhhhhhhcchhhhhh
Confidence            5689999999999999999999999987641  11111    1111222344455554443321  12346667777786


Q ss_pred             hcCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------hccCCCCCCCCceEEEEEEeCCeEEEEEeCCceEE
Q 015410          244 ASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQE------MEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAV  317 (407)
Q Consensus       244 ~~~~~~~~~~~~~~~~v~~aL~~AF~~lD~di~~~~~~~------~~~~~~~a~sGSTAlvalI~~~~L~VANvGDSRAV  317 (407)
                      ++......  .....++.++|++||.++|++|...+...      ....++...|||||++++|.+++||||||||||||
T Consensus       147 ~~~~~~~~--~~~~~~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~GtTa~v~li~~~~l~vAnvGDSRa~  224 (467)
T 2pnq_A          147 ELIDLNTG--ESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAM  224 (467)
T ss_dssp             HHHHC--------CCCHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSEECEEEEEEETTEEEEEEESSCEEE
T ss_pred             hhcccccc--ccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcceEEEEEEECCEEEEEECCCceEE
Confidence            54311000  00011578999999999999998765421      00122356799999999999999999999999999


Q ss_pred             EEecCCcccccCCCceeEEecCCCCCCCCHHHHHHHHhcCCCC--CCceecCcccCcccccccccCCccccc
Q 015410          318 LATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDD--PMPILAGKVKGKLKVTRAFGVGYLKKV  387 (407)
Q Consensus       318 L~~~~~~~~~~~~g~~~a~~LT~DH~~~n~~E~~RI~~~hP~~--~~vi~~gRV~G~LavTRAfGD~~lK~~  387 (407)
                      |++..      ++|.|++++||.||++.++.|++||+++||..  +.++..+||.|.|++||||||..|||+
T Consensus       225 l~r~~------~~g~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~~~~~~~~~Rv~G~l~vtRAlGd~~~K~~  290 (467)
T 2pnq_A          225 LGVQE------EDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWS  290 (467)
T ss_dssp             EEEEC------TTSCEEEEECCCCCSTTCHHHHHHHHHTSCGGGHHHHBSSSSBTTTBSSSBCEECGGGTSC
T ss_pred             EEEec------CCCcEEEEECCCCCCCCCHHHHHHHHHcCCCcccceeEecCccccccccchhcCchhhccc
Confidence            99986      57899999999999999999999999999864  367788999999999999999999973
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 407
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 7e-08
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 7e-08
 Identities = 44/238 (18%), Positives = 73/238 (30%), Gaps = 67/238 (28%)

Query: 158 EDRVQAVCSEEHG---LLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATR 214
           ED   AV     G     F A+YDG  G   A +    L                     
Sbjct: 36  EDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHL--------------------- 74

Query: 215 APDDSEFGGHLQYIFEDERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAEND 274
                     L +I  ++    +A +                    +++++  +     +
Sbjct: 75  ----------LDHITNNQDFKGSAGA------------------PSVENVKNGIRTGFLE 106

Query: 275 FLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNLGDSRAVLATYDEVNDLSGHKRLK 334
               +    E +      GS  + VL+     Y +N GDSR +L            +  K
Sbjct: 107 IDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLL-----------CRNRK 155

Query: 335 AIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKVHIQYC 392
               T+ H   N  E+ R+ +      +     +V G L V+RA G    K VH +  
Sbjct: 156 VHFFTQDHKPSNPLEKERIQNAGGSVMIQ----RVNGSLAVSRALGDFDYKCVHGKGP 209

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 99.89
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-34  Score=276.37  Aligned_cols=170  Identities=25%  Similarity=0.328  Sum_probs=142.5

Q ss_pred             CCCCceEEEEecC---CCCeEEEEEEcCCCChHHHHHHHHHHHHHHHHhhhhhhhhhccccCCCCCCcccCCccchhhhh
Q 015410          155 AAGEDRVQAVCSE---EHGLLFCAIYDGFNGRDAADFLAGTLYESVMFYSNLFEWESKIDATRAPDDSEFGGHLQYIFED  231 (407)
Q Consensus       155 ~~~EDR~~a~~~~---~~g~lffGVFDGHgG~~aA~~ls~~L~~~I~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (407)
                      ..|||++.+....   ..++.||||||||||+.||+|++++|+.+|...+....     .                    
T Consensus        33 ~~~ED~~~~~~~~~~~~~~~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~~-----~--------------------   87 (295)
T d1a6qa2          33 VEMEDAHTAVIGLPSGLESWSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKG-----S--------------------   87 (295)
T ss_dssp             SSCCEEEEEEEEETTTEEEEEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHC-----S--------------------
T ss_pred             CcccCeeEEEcccCCCCCceEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhhcc-----c--------------------
Confidence            4679998876543   34578899999999999999999999999987653110     0                    


Q ss_pred             hhhhhhhhHHhhhcCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceEEEEEEeCCeEEEEEe
Q 015410          232 ERKDSAANSFANASLHPEREISSSFQHAVLDSLQRALNQAENDFLHMVEQEMEDRPDLVSVGSCVLLVLLHGNDLYTLNL  311 (407)
Q Consensus       232 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~aL~~AF~~lD~di~~~~~~~~~~~~~~a~sGSTAlvalI~~~~L~VANv  311 (407)
                                          ......+++.++|++||.++++++....+.    .+....+||||++++|.+++|||||+
T Consensus        88 --------------------~~~~~~~~~~~al~~a~~~~~~~~~~~~~~----~~~~~~~GtTa~~~~i~~~~l~vanv  143 (295)
T d1a6qa2          88 --------------------AGAPSVENVKNGIRTGFLEIDEHMRVMSEK----KHGADRSGSTAVGVLISPQHTYFINC  143 (295)
T ss_dssp             --------------------SSSCCHHHHHHHHHHHHHHHHHHHHHHHHH----TTCCCCCEECEEEEEECSSEEEEEEE
T ss_pred             --------------------cccchHHHHHHHHHHHHHHHHHHHhhhhhh----ccCcCCCCCeEEEEEeeCCEEEEEec
Confidence                                001123478999999999999998776554    44556799999999999999999999


Q ss_pred             CCceEEEEecCCcccccCCCceeEEecCCCCCCCCHHHHHHHHhcCCCCCCceecCcccCcccccccccCCcccccc
Q 015410          312 GDSRAVLATYDEVNDLSGHKRLKAIQLTESHTVENEDERTRLLSEHPDDPMPILAGKVKGKLKVTRAFGVGYLKKVH  388 (407)
Q Consensus       312 GDSRAVL~~~~~~~~~~~~g~~~a~~LT~DH~~~n~~E~~RI~~~hP~~~~vi~~gRV~G~LavTRAfGD~~lK~~~  388 (407)
                      |||||||++.+           ++++||.||++.++.|++||++.+    ..|..+|+.|.|++||||||..+|...
T Consensus       144 GDSR~~l~~~~-----------~~~~lT~dH~~~~~~E~~Ri~~~g----g~v~~~r~~g~l~~tRa~Gd~~~k~~~  205 (295)
T d1a6qa2         144 GDSRGLLCRNR-----------KVHFFTQDHKPSNPLEKERIQNAG----GSVMIQRVNGSLAVSRALGDFDYKCVH  205 (295)
T ss_dssp             SSCEEEEEETT-----------EEEEECCCCCTTSHHHHHHHHHTT----CCEETTEETTTBSCSBCEECGGGSCCT
T ss_pred             CCCeEEEeecc-----------cceeeccccCcccHHHHhhHhhcC----CcccccccCCceeeeeccCcHHhhhcc
Confidence            99999999988           999999999999999999999996    567789999999999999999999643
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure