Citrus Sinensis ID: 015414

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------
MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKAKQT
ccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHccccccccccHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHHcccccccccccHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHcc
ccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccEEEcccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcHHcccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccc
mwgapaepadsyyevrpectdvpktrfkikpgktlsARKWQaaftpegqldigktlsrihrggihpsirGEVWEFLLgcyepkstfdEREEIRQRRRLQYSAWKEEChqifpvvgsgkfitapvvtedgqpiqdplvlqetnsgisasSSKMVKELLSHGPLDKKVIQWMLTLHQIGldvirtdrtLVFYEKQENLSKLWDILAVYAWVDrdvgycqgmsdlcsPMIILLENEADAFWCFERLMRRLRgnfrctessvgvetQLSNLASItqvidpklhqhletlgggdYLFAFRMLMVLFRREFSFCDSLYLWEMMWALeydphlfylyeeaesaastksegskAKAKSIRQCGKYERenmkngaktseaplPISVFLVASVLKDKSSKLLQEARGLDDVVKAKQT
mwgapaepadsyyevrpectdvpktrfkikpgktlsarkwqaaftpegqldigktLSRIHRGGIHPSIRGEVWEFLLGCYEPkstfdereeIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESaastksegskakaksIRQCGKYERENMkngaktseaplPISVFLVASVLKDKSSkllqearglddvvkakqt
MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDereeirqrrrLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYeeaesaastksegskakaksIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKAKQT
******************CTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTED***************************LLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYE******************************************PISVFLVASVL***********************
*************************************RKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIF********************IQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAES*************************************LPISVFLVASVLKDKSSKLLQEARGLDDVVKAK**
***********YYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEA********************CGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKAKQT
********************************KTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETN******************PLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKAK**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKAKQT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query407 2.2.26 [Sep-21-2011]
Q9CXF4671 TBC1 domain family member yes no 0.560 0.339 0.338 3e-35
Q8TC07691 TBC1 domain family member yes no 0.577 0.340 0.333 3e-34
Q9UUH7743 GTPase-activating protein yes no 0.619 0.339 0.290 5e-30
Q8BYH7645 TBC1 domain family member no no 0.624 0.393 0.319 2e-28
Q9HA65648 TBC1 domain family member no no 0.624 0.391 0.315 2e-27
Q6FWI1745 GTPase-activating protein yes no 0.601 0.328 0.283 8e-27
A1A5B6 742 TBC1 domain family member no no 0.592 0.324 0.304 1e-26
Q6BU76757 GTPase-activating protein yes no 0.656 0.352 0.281 3e-26
Q8TBP0767 TBC1 domain family member no no 0.601 0.319 0.303 2e-24
Q3MII6 688 TBC1 domain family member no no 0.353 0.209 0.38 3e-23
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function desciption
 Score =  149 bits (377), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 145/295 (49%), Gaps = 67/295 (22%)

Query: 35  LSARKWQAAFTPEGQLDIGKTL-SRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIR 93
           +S  +W  +  PEG+L   +++  +I RGG+  S+R + W+FLLG +   ST +ER +++
Sbjct: 300 VSLEEWNKSLDPEGRLVAVESMKQKIFRGGLSHSLRKQAWKFLLGYFPWDSTKEERTQLQ 359

Query: 94  Q-------RRRLQYSAWKEECHQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGIS 146
           +       R +LQ   WK                                        +S
Sbjct: 360 KQKTDEYFRMKLQ---WK---------------------------------------SVS 377

Query: 147 ASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN--LSKLWDILA 204
            +  K    L  +  L +K             DV RTDRT  FYE Q+N  L  L DIL 
Sbjct: 378 EAQEKRNSRLRDYRSLIEK-------------DVNRTDRTNKFYEGQDNPGLILLHDILM 424

Query: 205 VYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQL 264
            Y   D D+GY QGMSDL SP++ ++ENE DAFWCF   M ++  NF   E   G++TQL
Sbjct: 425 TYCMYDFDLGYVQGMSDLLSPLLYVMENEVDAFWCFASYMDQMHQNFE--EQMQGMKTQL 482

Query: 265 SNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWA 319
             L+++ +++D     +LE+   G   F FR L++ F+REFSF D L LWE+MW 
Sbjct: 483 IQLSTLLRLLDSGFCSYLESQDSGYLYFCFRWLLIRFKREFSFLDILRLWEVMWT 537
Acts as a GTPase activating protein for RAB7A. Does not act on RAB4, RAB5 or RAB6.
Mus musculus (taxid: 10090)
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function description
>sp|Q6BU76|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 Back     alignment and function description
>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
356543936422 PREDICTED: TBC1 domain family member 15- 0.958 0.924 0.803 0.0
224117458467 predicted protein [Populus trichocarpa] 0.987 0.860 0.793 0.0
449470425444 PREDICTED: GTPase-activating protein gyp 0.980 0.898 0.790 0.0
356549835422 PREDICTED: TBC1 domain family member 15- 0.958 0.924 0.794 0.0
224126335488 predicted protein [Populus trichocarpa] 0.987 0.823 0.761 0.0
255563721413 conserved hypothetical protein [Ricinus 0.916 0.903 0.834 0.0
357452753443 GTPase-activating protein gyp7 [Medicago 0.982 0.902 0.756 0.0
79325285433 RabGAP/TBC domain-containing protein [Ar 0.987 0.928 0.794 0.0
79487043436 RabGAP/TBC domain-containing protein [Ar 0.987 0.922 0.794 0.0
297803390436 rab GTPase activator [Arabidopsis lyrata 0.987 0.922 0.789 0.0
>gi|356543936|ref|XP_003540414.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/403 (80%), Positives = 360/403 (89%), Gaps = 13/403 (3%)

Query: 1   MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIH 60
           MW  P  PADS+YE+RPECTDVP TRFKIK GKTLSARKW AAFTPEG LDIGKTLSRI+
Sbjct: 1   MWRDPGVPADSFYEIRPECTDVPVTRFKIKAGKTLSARKWHAAFTPEGYLDIGKTLSRIY 60

Query: 61  RGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGKFI 120
           RGG+HPSI+GEVWEFLLGCY+PKSTF+ER++IRQRRR+QY+ WKEECHQ+FP+VGSG+F+
Sbjct: 61  RGGVHPSIKGEVWEFLLGCYDPKSTFEERDQIRQRRRMQYATWKEECHQLFPLVGSGRFV 120

Query: 121 TAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDV 180
           TAPV+TEDGQPIQDPLVL+ET+     + +            DK V+QWMLTLHQIGLDV
Sbjct: 121 TAPVITEDGQPIQDPLVLKETSQAKGLAVT------------DKTVVQWMLTLHQIGLDV 168

Query: 181 IRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCF 240
           +RTDRTLVFYEKQENLSKLWDILAVYAW+D+DVGY QGM DLCSPMIILL++EADAFWCF
Sbjct: 169 VRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMCDLCSPMIILLDDEADAFWCF 228

Query: 241 ERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVL 300
           ERLMRRLRGNFRCTESSVGV  QLSNLAS+TQVIDPKLH+HLE LGGGDYLFAFRMLMVL
Sbjct: 229 ERLMRRLRGNFRCTESSVGVAAQLSNLASVTQVIDPKLHKHLEHLGGGDYLFAFRMLMVL 288

Query: 301 FRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAKSIRQCGKYERE 360
           FRREFSFCDSLYLWEMMWALEYDP LF +YE  +S AS K+EGSK K KSIRQCGKYERE
Sbjct: 289 FRREFSFCDSLYLWEMMWALEYDPDLFLMYEMPQS-ASEKAEGSKGKTKSIRQCGKYERE 347

Query: 361 NMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVK 403
            +K+GAK +EAPLP+SVFLVASVLKDKS+KLLQEARGLDDVVK
Sbjct: 348 IVKSGAKNAEAPLPMSVFLVASVLKDKSAKLLQEARGLDDVVK 390

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224117458|ref|XP_002317579.1| predicted protein [Populus trichocarpa] gi|222860644|gb|EEE98191.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449470425|ref|XP_004152917.1| PREDICTED: GTPase-activating protein gyp7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356549835|ref|XP_003543296.1| PREDICTED: TBC1 domain family member 15-like [Glycine max] Back     alignment and taxonomy information
>gi|224126335|ref|XP_002319813.1| predicted protein [Populus trichocarpa] gi|222858189|gb|EEE95736.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255563721|ref|XP_002522862.1| conserved hypothetical protein [Ricinus communis] gi|223537946|gb|EEF39560.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357452753|ref|XP_003596653.1| GTPase-activating protein gyp7 [Medicago truncatula] gi|355485701|gb|AES66904.1| GTPase-activating protein gyp7 [Medicago truncatula] Back     alignment and taxonomy information
>gi|79325285|ref|NP_001031730.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332659901|gb|AEE85301.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79487043|ref|NP_194440.2| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|23296366|gb|AAN13053.1| unknown protein [Arabidopsis thaliana] gi|332659900|gb|AEE85300.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297803390|ref|XP_002869579.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata] gi|297315415|gb|EFH45838.1| rab GTPase activator [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query407
TAIR|locus:2160145432 AT5G54780 [Arabidopsis thalian 0.985 0.928 0.761 6.6e-168
TAIR|locus:2136442436 AT4G27100 [Arabidopsis thalian 0.987 0.922 0.749 2e-166
TAIR|locus:2121353424 AT4G28550 [Arabidopsis thalian 0.943 0.905 0.549 9.1e-116
TAIR|locus:2038922425 AT2G20440 [Arabidopsis thalian 0.943 0.903 0.542 2.4e-115
TAIR|locus:2097573 720 AT3G59570 [Arabidopsis thalian 0.393 0.222 0.546 9.1e-65
TAIR|locus:2058228 745 AT2G43490 [Arabidopsis thalian 0.393 0.214 0.552 3.3e-64
TAIR|locus:2165710549 AT5G41940 [Arabidopsis thalian 0.297 0.220 0.487 2.2e-43
TAIR|locus:2168591577 AT5G53570 [Arabidopsis thalian 0.297 0.209 0.463 1e-37
UNIPROTKB|A8K8E1445 TBC1D15 "TBC1 domain family, m 0.339 0.310 0.485 4e-37
MGI|MGI:1913937671 Tbc1d15 "TBC1 domain family, m 0.339 0.205 0.485 4.2e-37
TAIR|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1633 (579.9 bits), Expect = 6.6e-168, P = 6.6e-168
 Identities = 307/403 (76%), Positives = 336/403 (83%)

Query:     1 MWGAPAEPADSYYEVRPECTDVPKTRFKIKPGKTLSARKWQAAFTPEGQLDIGKTLSRIH 60
             MWGA AEPADSYY +RPECTDVP T+FKIKPGKTLS RKWQAAFT EG LDIGKTLSRI 
Sbjct:     1 MWGAAAEPADSYYLIRPECTDVPNTKFKIKPGKTLSVRKWQAAFTTEGFLDIGKTLSRIQ 60

Query:    61 RGGIHPSIRGEVWEFLLGCYEPKSTFDXXXXXXXXXXLQYSAWKEECHQIFPVVGSGKFI 120
             RGGIHPSIRGEVWEFLLGCY+PKSTF+          LQY++WKEEC Q+FPV+GSG FI
Sbjct:    61 RGGIHPSIRGEVWEFLLGCYDPKSTFEEREQIRQRRRLQYASWKEECKQMFPVIGSGGFI 120

Query:   121 TAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDV 180
             TAPV+T  G+PI DP+VLQETN G  A+ S   K+L S GPLD+KVIQW+LTLHQIGLDV
Sbjct:   121 TAPVITNKGEPIYDPIVLQETNLG--ANGSDFFKDLASRGPLDQKVIQWLLTLHQIGLDV 178

Query:   181 IRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCF 240
              RTDRTLVFYEK+ENLSKLWDILA+YAW+D DVGYCQGMSDLCSPMI+LLE+EADAFWCF
Sbjct:   179 NRTDRTLVFYEKKENLSKLWDILALYAWIDNDVGYCQGMSDLCSPMIMLLEDEADAFWCF 238

Query:   241 ERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVL 300
             ERLMRRLRGNFR T  SVGVE QL++LASITQ+IDPKLH HLE LGGGDYLFA RM+MV 
Sbjct:   239 ERLMRRLRGNFRDTGRSVGVEAQLTHLASITQIIDPKLHHHLEKLGGGDYLFAIRMIMVQ 298

Query:   301 FRREFSFCDSLYLWEMMWALEYDPHLFYLYXXXXXXXXXXXXXXXXXXXXIRQCGKYERE 360
             FRREFSFCDSLYLWEMMWALEYDP ++ LY                    I QCGKYERE
Sbjct:   299 FRREFSFCDSLYLWEMMWALEYDPEMYSLYEEPQFEGERIEGSSKGKPKSINQCGKYERE 358

Query:   361 NMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVK 403
             NMKNG K++E PLPISVFLVASVLKDKSSKL+ EARGLDDVVK
Sbjct:   359 NMKNGGKSAEGPLPISVFLVASVLKDKSSKLMTEARGLDDVVK 401
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
TAIR|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168591 AT5G53570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8K8E1 TBC1D15 "TBC1 domain family, member 15, isoform CRA_d" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1913937 Tbc1d15 "TBC1 domain family, member 15" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00111109
SubName- Full=Putative uncharacterized protein; (467 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 6e-39
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 5e-37
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 7e-29
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  138 bits (350), Expect = 6e-39
 Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 8/167 (4%)

Query: 155 ELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN--LSKLWDILAVYAWVDRD 212
            LL     D K I      HQI  D+ RT     F++ +E      L  +L  YA  + +
Sbjct: 34  RLLKETAPDDKSIV-----HQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPE 88

Query: 213 VGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQ 272
           VGYCQGM+ L +P+++++E+E DAFWC  +LM R   NF       G++  L  L  + +
Sbjct: 89  VGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFY-LPDMSGLQLDLLQLDRLVK 147

Query: 273 VIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWA 319
             DP L++HL+ LG    L+A R  + LF RE      L +W++++A
Sbjct: 148 EYDPDLYKHLKDLGITPSLYALRWFLTLFARELPLEIVLRIWDVLFA 194

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 407
KOG4567370 consensus GTPase-activating protein [General funct 100.0
KOG2058436 consensus Ypt/Rab GTPase activating protein [Intra 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG1092484 consensus Ypt/Rab-specific GTPase-activating prote 100.0
KOG2223586 consensus Uncharacterized conserved protein, conta 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
KOG2224781 consensus Uncharacterized conserved protein, conta 100.0
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 100.0
KOG2222 848 consensus Uncharacterized conserved protein, conta 99.97
KOG1093725 consensus Predicted protein kinase (contains TBC a 99.96
KOG4347 671 consensus GTPase-activating protein VRP [General f 99.95
KOG1091 625 consensus Ypt/Rab-specific GTPase-activating prote 99.95
KOG4436948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.94
KOG2595395 consensus Predicted GTPase activator protein [Sign 99.92
KOG1102397 consensus Rab6 GTPase activator GAPCenA and relate 99.91
KOG2221267 consensus PDZ-domain interacting protein EPI64, co 99.86
KOG3636 669 consensus Uncharacterized conserved protein, conta 99.82
KOG4436 948 consensus Predicted GTPase activator NB4S/EVI5 (co 99.54
KOG1648813 consensus Uncharacterized conserved protein, conta 99.31
KOG2801 559 consensus Probable Rab-GAPs [Intracellular traffic 98.02
PF149611296 BROMI: Broad-minded protein 96.38
KOG2197488 consensus Ypt/Rab-specific GTPase-activating prote 83.99
KOG2224781 consensus Uncharacterized conserved protein, conta 83.94
>KOG4567 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-44  Score=326.15  Aligned_cols=296  Identities=25%  Similarity=0.399  Sum_probs=231.9

Q ss_pred             HHHhhcCCC-CCccHHHHHHHHhhCCCC--CCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 015414           39 KWQAAFTPE-GQLDIGKTLSRIHRGGIH--PSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG  115 (407)
Q Consensus        39 ~W~~~~~~~-~~i~~~~~l~~~~~~GIp--~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~  115 (407)
                      ..++.+.+. ..+|..+ ++.++..|+|  .++|+.+|++|||++|+..  ..|...+.+.|+.|...+++..   ..+|
T Consensus        11 ~~edvl~~~~~~id~ke-lr~~~~~g~p~~~~lR~~~WkllL~Yl~~er--~~w~s~La~~R~~Y~q~i~e~v---~epg   84 (370)
T KOG4567|consen   11 SIEDVLNPADDTIDLKE-LRKLCFYGVPDDASLRPLVWKLLLGYLPPER--SKWTSFLAKKRSLYKQFIEEIV---DEPG   84 (370)
T ss_pred             hHHHhhccccchhhHHH-HHHHhhcCCCCccchhHhHHHHHHhhcChhh--hhhHHHHHHHHHHHHHHHHHhc---cCcc
Confidence            444555543 3378888 8888899999  7999999999999999988  5677899999999999887643   2222


Q ss_pred             CCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccCh--
Q 015414          116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ--  193 (407)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~--  193 (407)
                      ....-.. ...+| ..-+.|.           +.+        ..+.|.+.+++.+.+.||++||.||.|+..+|+..  
T Consensus        85 ~~~~~~~-v~~~D-~~~dhPl-----------s~~--------~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~  143 (370)
T KOG4567|consen   85 KKDNSKK-VDSND-TDEDHPL-----------SLG--------PTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASS  143 (370)
T ss_pred             ccccccc-cccCc-ccccCCC-----------CCC--------chhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccc
Confidence            1111000 00000 0011111           111        12347888999999999999999999999988652  


Q ss_pred             -h------------------------hHHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhc----------chhHHHH
Q 015414          194 -E------------------------NLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE----------NEADAFW  238 (407)
Q Consensus       194 -~------------------------~~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~----------~E~~aF~  238 (407)
                       +                        ......|||..||..||.+||+||||+|+||+++++.          .|+|||+
T Consensus       144 ~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFF  223 (370)
T KOG4567|consen  144 YPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFF  223 (370)
T ss_pred             cccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHH
Confidence             1                        1234578999999999999999999999999999984          3999999


Q ss_pred             HHHHHHHhhccCccCC--CChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHH
Q 015414          239 CFERLMRRLRGNFRCT--ESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEM  316 (407)
Q Consensus       239 ~f~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~  316 (407)
                      ||..||..++++|..+  ++..|++..+..+..+|+.+|-+||.||++.++.|++|+++|+.+|++.+||+++|+||||.
T Consensus       224 CF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDs  303 (370)
T KOG4567|consen  224 CFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDS  303 (370)
T ss_pred             HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHH
Confidence            9999999999999754  45568888899999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhc--CChhhHHHHHHHHHhhhhhccCC--cchHHHHHhcCchhhhhh
Q 015414          317 MWALE--YDPHLFYLYEEAESAASTKSEGS--KAKAKSIRQCGKYERENM  362 (407)
Q Consensus       317 ~~~~~--~~~~~~~~~~~l~~~~~~~il~~--~~~~~~l~~~~~~~~~~~  362 (407)
                      +|++.  +.+.++++.++++.. |+.|+..  ...++.|++.|..+..++
T Consensus       304 l~sD~~rfd~Ll~iCcsmlil~-Re~il~~DF~~nmkLLQ~yp~tdi~~~  352 (370)
T KOG4567|consen  304 LLSDPQRFDFLLYICCSMLILV-RERILEGDFTVNMKLLQNYPTTDISKM  352 (370)
T ss_pred             HhcChhhhHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHhcCCCCCHHHH
Confidence            99965  445778888888888 8888765  355777787777665555

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only] Back     alignment and domain information
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only] Back     alignment and domain information
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only] Back     alignment and domain information
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only] Back     alignment and domain information
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only] Back     alignment and domain information
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only] Back     alignment and domain information
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14961 BROMI: Broad-minded protein Back     alignment and domain information
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 1e-11
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 6e-11
3dzx_A346 Crystal Structure Of The Rabgap Domain Of Human Tbc 3e-09
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 1e-07
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 3e-07
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 6e-06
3hzj_A310 Crystal Structure Of The Rabgap Domain Of The Rabga 4e-05
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 30/172 (17%)
Query: 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMI---- 227
           T HQI +D+ RT+  +  Y+ +   + L  IL ++A      GY QG++DL +P      
Sbjct: 106 TWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFL 165
Query: 228 ------------------------ILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQ 263
                                    + + EAD FWC  +L+ ++  N+       G+  Q
Sbjct: 166 TEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY--IHGQPGILRQ 223
Query: 264 LSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWE 315
           + NL+ + + ID  L+ H +        FAFR +  L  REF     + +W+
Sbjct: 224 VKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 275
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query407
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 8e-53
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 9e-12
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 3e-42
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 9e-08
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 8e-25
2qq8_A334 TBC1 domain family member 14; structural genomics 9e-25
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 4e-21
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 4e-20
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
 Score =  180 bits (457), Expect = 8e-53
 Identities = 55/272 (20%), Positives = 98/272 (36%), Gaps = 44/272 (16%)

Query: 163 DKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDL 222
             +  + + T HQI +D+ RT+  +  Y+ +   + L  IL ++A      GY QG++DL
Sbjct: 77  SDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDL 136

Query: 223 CSPMIILL----------------------------ENEADAFWCFERLMRRLRGNFRCT 254
            +P                                 + EAD FWC  +L+ ++  N+   
Sbjct: 137 VTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY--I 194

Query: 255 ESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLW 314
               G+  Q+ NL+ + + ID  L+ H +        FAFR +  L  REF     + +W
Sbjct: 195 HGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMW 254

Query: 315 EMMWALEYDPHLFYLY-------------EEAESAASTKSEGSKAKAKSIRQCGKYEREN 361
           +   + E    +   Y              E   A+            +           
Sbjct: 255 DTYLS-ETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAV 313

Query: 362 MKNGAKTSEAPLPISVFLVASVLKDKSSKLLQ 393
             +G     +     VF+ A+ L   S +L++
Sbjct: 314 EDSGKMRQSSLNEFHVFVCAAFLIKWSDQLME 345
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 100.0
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
Probab=100.00  E-value=5.3e-49  Score=383.81  Aligned_cols=262  Identities=23%  Similarity=0.359  Sum_probs=221.6

Q ss_pred             CHHHHHhhcCCCCCccHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 015414           36 SARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG  115 (407)
Q Consensus        36 t~~~W~~~~~~~~~i~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~  115 (407)
                      ..++|.++++.. .+|..+ ++.++++|||+++|+.||++|||++|.+.  ++|+...++.++.|.++++++.....   
T Consensus        25 r~~kw~~~l~~~-~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~---   97 (345)
T 2qfz_A           25 RLDKFKQLLAGP-NTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN---   97 (345)
T ss_dssp             HHHHHHHHHHCS-BCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC--------
T ss_pred             HHHHHHHHHcCC-CCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC---
Confidence            457999999764 478888 66677899999999999999999998765  57788888999999999987542100   


Q ss_pred             CCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccChhh
Q 015414          116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN  195 (407)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~  195 (407)
                                                                     +   ....+..+||++||.||+|+ ++|+.+.+
T Consensus        98 -----------------------------------------------~---~~~~~~~~~I~~Dv~RT~p~-~~F~~~~~  126 (345)
T 2qfz_A           98 -----------------------------------------------D---EVHQDTYRQIHIDIPRMSPE-ALILQPKV  126 (345)
T ss_dssp             -----------------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTSHHH
T ss_pred             -----------------------------------------------c---cchHHHHHHHHHhCcccCCc-cccCCchH
Confidence                                                           0   00113578999999999999 99999889


Q ss_pred             HHHHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhc------------------------chhHHHHHHHHHHHhhccCc
Q 015414          196 LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE------------------------NEADAFWCFERLMRRLRGNF  251 (407)
Q Consensus       196 ~~~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~------------------------~E~~aF~~f~~l~~~~~~~~  251 (407)
                      ++.|+|||.+|+.+||++|||||||+|+|+|++++.                        +|++|||||+++|+++.++|
T Consensus       127 ~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y  206 (345)
T 2qfz_A          127 TEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNY  206 (345)
T ss_dssp             HHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGS
T ss_pred             HHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHcccccc
Confidence            999999999999999999999999999999998874                        38999999999999998877


Q ss_pred             cCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcccCCChHhHHHHHHHHhhhcCCh---hhHH
Q 015414          252 RCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDP---HLFY  328 (407)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~~~~~W~~tlF~~~l~~~~vlriWD~~~~~~~~~---~~~~  328 (407)
                      ..  +.+++...+..++.+|+.++|+||+||.+.|+++.+|+++||+|||++++|+++++||||.+|++|..+   .+|.
T Consensus       207 ~~--~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v  284 (345)
T 2qfz_A          207 TF--AQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYV  284 (345)
T ss_dssp             ST--TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHH
T ss_pred             cc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            54  467999999999999999999999999999999999999999999999999999999999999998763   4555


Q ss_pred             HHHHHHHhhhhhccCCcchHHHHHhcCchh
Q 015414          329 LYEEAESAASTKSEGSKAKAKSIRQCGKYE  358 (407)
Q Consensus       329 ~~~~l~~~~~~~il~~~~~~~~l~~~~~~~  358 (407)
                      ++|++... +++++.+.+..+++..+.++.
T Consensus       285 ~~AiL~~~-~~~ll~~~d~~~il~~L~~~p  313 (345)
T 2qfz_A          285 CAAFLVRW-RKEILEEKDFQELLLFLQNLP  313 (345)
T ss_dssp             HHHHHHHT-HHHHHHCCCHHHHHHHHTSCS
T ss_pred             HHHHHHHH-HHHHHhhCCHHHHHHHHHcCC
Confidence            66666665 888887666677776666553
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 407
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 5e-18
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 2e-05
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 7e-16
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.5 bits (195), Expect = 5e-18
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 28/108 (25%)

Query: 172 TLHQIGLDVIRTDRTLVFYEKQENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMII--- 228
           T HQI +D+ RT+  +  Y+ +   + L  IL ++A      GY QG++DL +P      
Sbjct: 85  TWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFL 144

Query: 229 -------------------------LLENEADAFWCFERLMRRLRGNF 251
                                    + + EAD FWC  +L+ ++  N+
Sbjct: 145 TEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query407
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 100.0
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.68
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.2e-34  Score=255.66  Aligned_cols=158  Identities=27%  Similarity=0.460  Sum_probs=134.0

Q ss_pred             HHHHhhcCCCCCccHHHHHHHHhhCCCCCCchHhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCCC
Q 015414           38 RKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSG  117 (407)
Q Consensus        38 ~~W~~~~~~~~~i~~~~~l~~~~~~GIp~~~R~~vW~~LLg~~~~~~t~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~  117 (407)
                      .+|.+++.+.+.++..+ +|.++++|||+++|+.||++|||++|.+++  +|+....++++.|...........      
T Consensus         8 ~~~~~~l~~~~~i~~~~-lr~l~~~Gip~~lR~~vW~~llg~~~~~~~--~~~~~~~~~~~~y~~~~~~~~~~~------   78 (194)
T d1fkma1           8 SKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQ------   78 (194)
T ss_dssp             HHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSS------
T ss_pred             HHHHHHhcccCCCCHHH-HHHHHHcCCChHHHHHHHHHHHhhcCCchh--hHHHHHHHHhhhhhhhhhhhhhcc------
Confidence            58999998877789988 667778999999999999999999998884  566677888888988776532100      


Q ss_pred             cccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhhcCCCCCcccccChhhHH
Q 015414          118 KFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLS  197 (407)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~  197 (407)
                                                                      .....+..++|++||.||+|++++|+.+++++
T Consensus        79 ------------------------------------------------~~~~~~~~~~I~~Dv~RT~~~~~~f~~~~~~~  110 (194)
T d1fkma1          79 ------------------------------------------------HSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQN  110 (194)
T ss_dssp             ------------------------------------------------CSTHHHHHHHHHHHGGGSSTTSGGGGSHHHHH
T ss_pred             ------------------------------------------------cccchHHHHHHHHHHHhcCCcccccccchhHH
Confidence                                                            00112467899999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCcCCChhHHHHHHHHhhc----------------------------chhHHHHHHHHHHHhhcc
Q 015414          198 KLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE----------------------------NEADAFWCFERLMRRLRG  249 (407)
Q Consensus       198 ~L~~iL~ay~~~~~~igY~QGm~~i~a~ll~~~~----------------------------~E~~aF~~f~~l~~~~~~  249 (407)
                      .|+|||.+||.+||++|||||||+|||+|+.++.                            .|++|||||+++|+++.+
T Consensus       111 ~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d  190 (194)
T d1fkma1         111 SLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITD  190 (194)
T ss_dssp             HHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999998763                            289999999999999988


Q ss_pred             Ccc
Q 015414          250 NFR  252 (407)
Q Consensus       250 ~~~  252 (407)
                      +|.
T Consensus       191 ~y~  193 (194)
T d1fkma1         191 NYI  193 (194)
T ss_dssp             GSS
T ss_pred             cCC
Confidence            875
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure