Citrus Sinensis ID: 015496

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWNKL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccccEEEEccccHHccccHHcccccccEEEEccccccccccccHHHHHHHHHHccccccccccccHHHHccHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHcHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccc
Coil and Loop (DISEMBL)
MNTRRNRIASRALWLLVLLMITMAIGRAervnnsssaglfwstakededqprkaernddstAAAIVndhdeldggfssIDGMLQWaighsdpaklkETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVepidnandlsklGGLSVLVgqlnhpdtdiRKISAWILgkasqnnplvQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCqlenmhkvepplfrdrFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWNKL
Flexible Loop (DISEMBL)
mntrrnriasrALWLLVLLMITMAIGRAERVNNSSSAGLfwstakededqprkaernddSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKEtaqdvqrlspselkKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGkasqnnplVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFfrklgkvgtrlcwnkl
Low Complexity Region (SEG)
MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDlsklgglsvlvgqlNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWNKL
Disordered region (IsUnstruct)
*******IASRALWLLVLLMITMAIGRAERV*******LFW********************************GGFSSIDGMLQWAIG*******************************************LIQIAIDDLNNSTLSL***QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN**
Disordered Region (DISOPRED)
******R*ASRALWLLVLLMITMA***********************************************************************************************************L*****************SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALER*****************AMDVEALRREVELIFFRKLGKVGTRLCWNKL
Disordered Region (DISEMBL)
********ASRALWLLVLLMITMAIGRAERVNNSSSAGLFWST****************STAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWNKL
Disordered Region (DISPRO)
**TRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKA*R*DDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSD********Q*VQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWNKL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTRRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGxxxxxxxxxxxxxxxxxxxxxRDYAMDVEALRREVELIFFRKLGKVGTRLCWNKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
A1DLW4	216	Hsp70 nucleotide exchange	N/A	no	0.429	0.805	0.308	3e-16
Q4WDH3	216	Hsp70 nucleotide exchange	yes	no	0.429	0.805	0.303	2e-15
Q32KV6	462	Nucleotide exchange facto	yes	no	0.427	0.374	0.327	1e-14
Q1E3S4	212	Hsp70 nucleotide exchange	N/A	no	0.409	0.783	0.317	1e-14
Q9H173	461	Nucleotide exchange facto	yes	no	0.471	0.414	0.326	1e-14
Q0CH70	212	Hsp70 nucleotide exchange	N/A	no	0.402	0.768	0.315	3e-14
A2R4I6	287	Hsp70 nucleotide exchange	yes	no	0.296	0.418	0.371	6e-14
Q6P6S4	465	Nucleotide exchange facto	yes	no	0.427	0.372	0.322	7e-14
Q9EPK6	465	Nucleotide exchange facto	yes	no	0.427	0.372	0.322	9e-14
Q4P7F2	285	Hsp70 nucleotide exchange	N/A	no	0.493	0.701	0.286	1e-13

>sp|A1DLW4|FES1_NEOFI Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fes1 PE=3 SV=1

 Score = 86.7 bits (213), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 94/178 (52%), Gaps = 4/178 (2%)

Query: 78  SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
           +++ +L+W+I +S  A+    A D    +P+   +  +  + L      PSDA L++ A+
Sbjct: 4   NMNNLLKWSIENSTSAR---QAADSNDAAPAPTSRSNLNPEMLSALFGGPSDADLMKAAM 60

Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 197
           + L++  + LE+   A      L+E IDNAN+L  LG  + LV  L H + ++R+++AW 
Sbjct: 61  EALHSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWC 120

Query: 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAGQEMF 254
           +G A QNN   Q +++    L  L+ M  S     A  KA+Y +SS +RN     + F
Sbjct: 121 IGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEF 178

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|Q4WDH3|FES1_ASPFU Hsp70 nucleotide exchange factor fes1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=fes1 PE=3 SV=1

 Score = 84.0 bits (206), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 4/178 (2%)

Query: 78  SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
           +++ +L+W+I +S  A+    A +     P+   +  +  + L      PSDA L++ A+
Sbjct: 4   NMNNLLKWSIENSTSAR---QAGNSNGTGPAPASRSNLNPEMLSALFGGPSDADLMKAAM 60

Query: 138 DDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 197
           + L++  + LE+   A      L+E IDNAN+L  LG  + LV  L H + ++R+++AW 
Sbjct: 61  EALHSDEVDLENKMIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEAEMRRMAAWC 120

Query: 198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAGQEMF 254
           +G A QNN   Q +++    L  L+ M  S     A  KA+Y +SS +RN     + F
Sbjct: 121 IGTAVQNNEKAQDKLIVFNVLPTLVAMSTSDPAPAARKKAVYAISSGVRNYQPAMDEF 178

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q32KV6|SIL1_BOVIN Nucleotide exchange factor SIL1 OS=Bos taurus GN=SIL1 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 101/180 (56%), Gaps = 7/180 (3%)

Query: 109 ELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN 168
           ELKK   E+  ++E     +D Q++   I+  N+S+ SLE+   AL +L   V  +DNA 
Sbjct: 167 ELKKDFEELNVVIE-----TDMQIMVRLINKFNSSSSSLEEKIAALFDLEYYVHQMDNAQ 221

Query: 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS- 227
           DL   GGL V++  LN  +  +++ +A++LG A  +NP VQ + +E GAL KL+ ++ + 
Sbjct: 222 DLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATE 281

Query: 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287
             +    KAL+ + SL+R+    Q+ F    G  +L+ ++     E+ L  + V+L+ DL
Sbjct: 282 QPLTTKKKALFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKGMEV-LAVRVVTLLYDL 340

Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5.

Bos taurus (taxid: 9913)

>sp|Q1E3S4|FES1_COCIM Hsp70 nucleotide exchange factor FES1 OS=Coccidioides immitis (strain RS) GN=FES1 PE=3 SV=2

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 100/173 (57%), Gaps = 7/173 (4%)

Query: 77  SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
           S ++ +L+W+I +S PA+  +  Q  Q  S   L  + ++   L+     PSDA L++ A
Sbjct: 3   SHMNNLLKWSIENSVPAQPDDPEQVKQERSLDRLDTQALQ--RLLSN--APSDADLMKAA 58

Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAW 196
           ++ +++   +LE+   A      L+E +DNAN++  LG  + LV  L+  +  +RK++AW
Sbjct: 59  MEVVSDDFATLENKLIAFDNFEQLIENLDNANNMGVLGLWTPLVEALSDAEPQMRKMAAW 118

Query: 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV--KALYTVSSLIRNN 247
            +G A QNN + Q ++L+  A+ KL+ + K+   +  V  KA+Y +SS +RN+
Sbjct: 119 CIGTAVQNNEMAQNKLLDFKAVPKLLSLAKTD-PDTTVRRKAIYALSSAVRNH 170

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Coccidioides immitis (strain RS) (taxid: 246410)

>sp|Q9H173|SIL1_HUMAN Nucleotide exchange factor SIL1 OS=Homo sapiens GN=SIL1 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 110/208 (52%), Gaps = 17/208 (8%)

Query: 93  AKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLK---------TPSDAQLIQIAIDDL 140
           AK KE A+     S  E K RQ E+K L   +E+LK           +D Q++   I+  
Sbjct: 136 AKFKEGAE---MESSKEDKARQAEVKRLFRPIEELKKDFDELNVVIETDMQIMVRLINKF 192

Query: 141 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK 200
           N+S+ SLE+   AL +L   V  +DNA DL   GGL V++  LN  +  +++ +A++LG 
Sbjct: 193 NSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGA 252

Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259
           A  +NP VQ + +E GAL KL+ ++ +   +    K L+ + SL+R+    Q  F    G
Sbjct: 253 AFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQRQFLKLGG 312

Query: 260 DLMLQDILGNSSFEIRLHRKAVSLVGDL 287
             +L+ ++     E+ L  + V+L+ DL
Sbjct: 313 LQVLRTLVQEKGTEV-LAVRVVTLLYDL 339

Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5.

Homo sapiens (taxid: 9606)

>sp|Q0CH70|FES1_ASPTN Hsp70 nucleotide exchange factor fes1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fes1 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 92/171 (53%), Gaps = 8/171 (4%)

Query: 77  SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
           ++++ +L+W+I +S  A   + A        ++   R +  + +      PSDA L++ +
Sbjct: 3   ANMNKILKWSIQNSTNASSDQNAA-------ADATSRGLTPEMMATLFGGPSDADLMKAS 55

Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAW 196
           ++ L +  + LE+   A      L+E IDNAN+L  LG  + LV  L H + D+R+++AW
Sbjct: 56  MEALRSDEVDLENKLVAFDNFEQLIESIDNANNLEPLGLWTPLVELLRHEEADMRRMAAW 115

Query: 197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRN 246
            +G A QNN   Q +++ L AL  L+ M  S     A  KA+Y +SS +RN
Sbjct: 116 CVGTAVQNNEKAQDKLVVLNALPTLVAMSTSDPNPAARKKAVYALSSAVRN 166

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|A2R4I6|FES1_ASPNC Hsp70 nucleotide exchange factor fes1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fes1 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/121 (37%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP 186
           PS+A L++ A++ L +  + LE+   A      L+E IDNAN+L  LG  + LV  L+H 
Sbjct: 55  PSEADLMKAAMEALRSDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLDHK 114

Query: 187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIR 245
           + D+R+++AW +G A QNN   Q +++ L AL KL+ +  +        KA+Y +SS +R
Sbjct: 115 EPDMRRMAAWCIGTAVQNNEKAQDKLIVLNALPKLVSLATADTTPVVRKKAVYAISSAVR 174

Query: 246 N 246
           N
Sbjct: 175 N 175

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|Q6P6S4|SIL1_RAT Nucleotide exchange factor SIL1 OS=Rattus norvegicus GN=Sil1 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 101/180 (56%), Gaps = 7/180 (3%)

Query: 109 ELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN 168
           ELKK   E+  ++E     +D Q++   I+  N+S+ SLE+   AL +L   V  +DNA 
Sbjct: 170 ELKKEFDELNVVLE-----TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQ 224

Query: 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS- 227
           DL   GGL V++  LN  +  +++ +A++LG A  +NP VQ + +E GAL KL+ ++ + 
Sbjct: 225 DLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATE 284

Query: 228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287
             +    K L+ + SL+R+    Q+ F    G  +L+ ++   S ++ L  + V+L+ DL
Sbjct: 285 QPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKSAKV-LAVRVVTLLYDL 343

Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5.

Rattus norvegicus (taxid: 10116)

>sp|Q9EPK6|SIL1_MOUSE Nucleotide exchange factor SIL1 OS=Mus musculus GN=Sil1 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 102/180 (56%), Gaps = 7/180 (3%)

Query: 109 ELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN 168
           ELKK   E+  ++E     +D Q++   I+  N+S+ SLE+   AL +L   V  +DNA 
Sbjct: 170 ELKKEFDELNVVLE-----TDMQIMVRLINKFNSSSSSLEEKVAALFDLEYYVHQMDNAQ 224

Query: 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228
           DL   GGL V++  LN  +  +++ +A++LG A  +NP VQ + +E GAL KL+ ++ ++
Sbjct: 225 DLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEAIEGGALQKLLVILATN 284

Query: 229 -FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287
             +    K L+ + SL+R+    Q+ F    G  +L+ ++   S ++ L  + V+L+ DL
Sbjct: 285 QPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKSAKV-LAVRVVTLLYDL 343

Required for protein translocation and folding in the endoplasmic reticulum (ER). Functions as a nucleotide exchange factor for the ER lumenal chaperone HSPA5.

Mus musculus (taxid: 10090)

>sp|Q4P7F2|FES1_USTMA Hsp70 nucleotide exchange factor FES1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=FES1 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 13/213 (6%)

Query: 82  MLQWAIGHSDPAKLKETA-QDVQRLSPSELKKRQMEIKE--LMEKLKTPSDAQL----IQ 134
           +L+W + +S    +   A Q V+++S      R+ ++ +  L   +   S+AQ+    + 
Sbjct: 10  LLKWGLANSGSTGVASFASQSVEQISADIEAGRRPDLADPNLYNAIMGKSEAQMMAEELS 69

Query: 135 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKIS 194
           +AID    ++ +L D   AL    +L+E IDNAN+++ +   S ++  L+ P+ +I+  +
Sbjct: 70  VAID----TSRTLPDRMTALDNFEMLIEQIDNANNMTSMKMWSPIISLLSAPEAEIQTAA 125

Query: 195 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 254
           AWI+G A QNN   Q  VL+   ++ L+ ++ S   E   KA+Y +S L+++N A    F
Sbjct: 126 AWIIGTAVQNNDKAQMAVLDFHPVAALLDLLHSHVDEVRAKAMYALSGLLKHNPAAMHQF 185

Query: 255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 287
               G  ML   L + +  +R  RK   L+  L
Sbjct: 186 DQLDGWNMLNMALVDPNLGLR--RKTAFLINAL 216

Functions as a nucleotide exchange factor (NEF) for Hsp70 chaperones which accelerates the release of ADP. Required for fully efficient Hsp70-mediated folding of proteins.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
359473854	395	PREDICTED: hsp70 nucleotide exchange fac	0.923	0.946	0.742	1e-158
255543300	395	sil1, putative [Ricinus communis] gi|223	0.940	0.964	0.715	1e-155
224053615	400	predicted protein [Populus trichocarpa]	0.896	0.907	0.717	1e-149
296085572	320	unnamed protein product [Vitis vinifera]	0.777	0.984	0.787	1e-139
449445798	395	PREDICTED: nucleotide exchange factor SI	0.950	0.974	0.655	1e-135
297819910	382	binding protein [Arabidopsis lyrata subs	0.920	0.976	0.625	1e-130
15231095	382	nucleotide exchange factor SIL1 [Arabido	0.920	0.976	0.611	1e-128
307135818	444	SIL1 [Cucumis melo subsp. melo]	0.933	0.851	0.552	1e-119
356574918	372	PREDICTED: nucleotide exchange factor SI	0.886	0.965	0.615	1e-118
357462195	378	Nucleotide exchange factor SIL1 [Medicag	0.792	0.849	0.657	1e-109

>gi|359473854|ref|XP_002269010.2| PREDICTED: hsp70 nucleotide exchange factor FES1 [Vitis vinifera]

 Score =  562 bits (1449), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 280/377 (74%), Positives = 321/377 (85%), Gaps = 3/377 (0%)

Query: 20  MITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSI 79
            +   + +A+RVN SSS GLFWSTAKE+ D  RK+E  + +     VND+ +LDGGFSS+
Sbjct: 17  FVGAVMAQADRVNKSSSGGLFWSTAKEEGDLMRKSEAQESTVG---VNDNADLDGGFSSL 73

Query: 80  DGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 139
           DGMLQWAIGHSDP KLKETAQDVQR SP+ELKKRQMEIKELMEKLK PSDAQL+QIAI D
Sbjct: 74  DGMLQWAIGHSDPTKLKETAQDVQRFSPNELKKRQMEIKELMEKLKMPSDAQLMQIAIAD 133

Query: 140 LNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILG 199
           LNNS+L +ED  RALQELLILVEPIDNANDL+KLGGL+V++ +L++PD +IRK SAWILG
Sbjct: 134 LNNSSLPMEDHHRALQELLILVEPIDNANDLNKLGGLTVVIRELDNPDPEIRKTSAWILG 193

Query: 200 KASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 259
           KASQNNP+VQKQVLELGAL KLMKMV SSFVEEA KALY VS+LIRNNLA QE+FY +AG
Sbjct: 194 KASQNNPVVQKQVLELGALPKLMKMVNSSFVEEATKALYAVSALIRNNLAAQELFYAKAG 253

Query: 260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 319
           DLMLQDIL N S +IRL RK V LVGDLA+CQLE+ HK E P F +R FLKSVVDLTAS+
Sbjct: 254 DLMLQDILSNPSIDIRLRRKTVFLVGDLAECQLESTHKAELPFFSNRHFLKSVVDLTASS 313

Query: 320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVE 379
           DLDLQEKAL A+KNLLQLRTTEALV KD+C LD ALER+R+QLQ++M EE QRDY MD+E
Sbjct: 314 DLDLQEKALIAVKNLLQLRTTEALVFKDYCDLDGALERMRKQLQQLMDEEYQRDYVMDLE 373

Query: 380 ALRREVELIFFRKLGKV 396
           +L REVELIF +KLGKV
Sbjct: 374 SLCREVELIFHKKLGKV 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543300|ref|XP_002512713.1| sil1, putative [Ricinus communis] gi|223548674|gb|EEF50165.1| sil1, putative [Ricinus communis]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/383 (71%), Positives = 329/383 (85%), Gaps = 2/383 (0%)

Query: 15  LLVLLMITMAIGRAERVNNSSSA-GLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELD 73
           L+ +++ITM +   ER+N SSS+ G+FWST KE+ D  RKAE ++D +AAA+VNDHD LD
Sbjct: 9   LVTVILITM-VAEGERLNKSSSSSGVFWSTVKEESDLLRKAEPDEDPSAAAVVNDHDHLD 67

Query: 74  GGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLI 133
           GGFSS+DGMLQWA+GHSDP KLKETAQDV+RLSP++LK RQ+EIKELM++LK PSDA L+
Sbjct: 68  GGFSSLDGMLQWAVGHSDPEKLKETAQDVRRLSPTDLKNRQLEIKELMDELKMPSDAHLM 127

Query: 134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKI 193
           Q AI+DL+NS+L LED  RALQELLILVEPIDNANDLSKLGGL VL+ +LNHPD++IR+I
Sbjct: 128 QNAINDLSNSSLPLEDHHRALQELLILVEPIDNANDLSKLGGLGVLIRELNHPDSNIRRI 187

Query: 194 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 253
           SAW+LGKASQNNP VQKQVLE+GAL+KLM+MVKS+  EE +KALY VS+LIRNNLAGQE+
Sbjct: 188 SAWVLGKASQNNPFVQKQVLEMGALNKLMQMVKSNCAEEGIKALYAVSALIRNNLAGQEL 247

Query: 254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 313
           FY EAGD MLQ+ILG+SS +IRL RKAV LV DLA+CQLEN+ + E P F +RFFLKSVV
Sbjct: 248 FYAEAGDQMLQEILGDSSTDIRLRRKAVFLVADLAECQLENVGRAELPFFSNRFFLKSVV 307

Query: 314 DLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRD 373
           DL +S DLDLQEKAL A+KNLLQL+T EA V+KDFCGLD ALER+RQQL  +M +E  RD
Sbjct: 308 DLVSSTDLDLQEKALVAVKNLLQLKTIEASVIKDFCGLDGALERMRQQLHVLMTQETYRD 367

Query: 374 YAMDVEALRREVELIFFRKLGKV 396
           YA D+E+LRREVELIF+ KL KV
Sbjct: 368 YATDIESLRREVELIFYSKLRKV 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053615|ref|XP_002297899.1| predicted protein [Populus trichocarpa] gi|222845157|gb|EEE82704.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 262/365 (71%), Positives = 316/365 (86%), Gaps = 2/365 (0%)

Query: 34  SSSAGLFWSTAKEDEDQPRKAE--RNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSD 91
           S++AGL WST K++ D   KAE   +DDS+AAA+VNDHD+LDGGFSS++GML WAIGHSD
Sbjct: 31  SATAGLLWSTGKDEPDLLSKAEPENSDDSSAAAVVNDHDDLDGGFSSLEGMLHWAIGHSD 90

Query: 92  PAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQ 151
           P KLKE A+DVQRLS SEL+KRQ+E+KELMEK+K PSDA+L+ +AIDDLNNS+ SLED Q
Sbjct: 91  PTKLKENAEDVQRLSASELQKRQIELKELMEKMKMPSDAELMHMAIDDLNNSSSSLEDRQ 150

Query: 152 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211
           RALQELLILVEP+DNANDL+KLGGL++++ +L+HPD DIR++SAW+LGKA QNN  VQKQ
Sbjct: 151 RALQELLILVEPLDNANDLNKLGGLAIVIQELDHPDHDIRRLSAWVLGKACQNNAAVQKQ 210

Query: 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271
           +LELGALSKL+KMVKSS +EEA+KALY VS+LI+N+LAGQE FY E GD MLQ+IL NSS
Sbjct: 211 ILELGALSKLIKMVKSSSIEEAIKALYAVSTLIQNHLAGQEFFYAEDGDAMLQEILSNSS 270

Query: 272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 331
            +IRL RKAVS+V DLA+ QLEN+ + E P FR+RFFLKSVVDLTAS DLDLQEKAL A+
Sbjct: 271 NDIRLLRKAVSVVADLAEYQLENIIRAESPCFRNRFFLKSVVDLTASTDLDLQEKALVAV 330

Query: 332 KNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFR 391
           KNLLQL+TT+ALVLKD C LD +LER+R+QL ++M EED RDYA+D+E LR EVELIF  
Sbjct: 331 KNLLQLKTTDALVLKDLCNLDGSLERMRRQLLDLMAEEDHRDYAVDLETLRGEVELIFHE 390

Query: 392 KLGKV 396
           KLGKV
Sbjct: 391 KLGKV 395

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085572|emb|CBI29304.3| unnamed protein product [Vitis vinifera]

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 248/315 (78%), Positives = 278/315 (88%)

Query: 82  MLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLN 141
           MLQWAIGHSDP KLKETAQDVQR SP+ELKKRQMEIKELMEKLK PSDAQL+QIAI DLN
Sbjct: 1   MLQWAIGHSDPTKLKETAQDVQRFSPNELKKRQMEIKELMEKLKMPSDAQLMQIAIADLN 60

Query: 142 NSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 201
           NS+L +ED  RALQELLILVEPIDNANDL+KLGGL+V++ +L++PD +IRK SAWILGKA
Sbjct: 61  NSSLPMEDHHRALQELLILVEPIDNANDLNKLGGLTVVIRELDNPDPEIRKTSAWILGKA 120

Query: 202 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 261
           SQNNP+VQKQVLELGAL KLMKMV SSFVEEA KALY VS+LIRNNLA QE+FY +AGDL
Sbjct: 121 SQNNPVVQKQVLELGALPKLMKMVNSSFVEEATKALYAVSALIRNNLAAQELFYAKAGDL 180

Query: 262 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL 321
           MLQDIL N S +IRL RK V LVGDLA+CQLE+ HK E P F +R FLKSVVDLTAS+DL
Sbjct: 181 MLQDILSNPSIDIRLRRKTVFLVGDLAECQLESTHKAELPFFSNRHFLKSVVDLTASSDL 240

Query: 322 DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEAL 381
           DLQEKAL A+KNLLQLRTTEALV KD+C LD ALER+R+QLQ++M EE QRDY MD+E+L
Sbjct: 241 DLQEKALIAVKNLLQLRTTEALVFKDYCDLDGALERMRKQLQQLMDEEYQRDYVMDLESL 300

Query: 382 RREVELIFFRKLGKV 396
            REVELIF +KLGKV
Sbjct: 301 CREVELIFHKKLGKV 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445798|ref|XP_004140659.1| PREDICTED: nucleotide exchange factor SIL1-like [Cucumis sativus]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 259/395 (65%), Positives = 313/395 (79%), Gaps = 10/395 (2%)

Query: 4   RRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDED---QPRKAERNDDS 60
           RR+ +    LW  + L+I  A       N+SS  GL WS+AK++ D     R  E +  +
Sbjct: 2   RRSLVVGLCLWFSLTLVIVDA-------NDSSLEGLIWSSAKQEGDLLIDHRPQEDSSAA 54

Query: 61  TAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKEL 120
            AA++V+D D  DGGFSS+D MLQWAIGHSDPAKLK+TAQDV+RLSP+E+KKRQ EIK+L
Sbjct: 55  AAASVVHDADGFDGGFSSLDSMLQWAIGHSDPAKLKDTAQDVKRLSPNEIKKRQEEIKDL 114

Query: 121 MEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV 180
           +E+LK PSDA+L+QIA+DDL NS+LSLED  RALQELL+LVEPIDNANDL KLGGL+VL 
Sbjct: 115 IEELKLPSDAKLMQIAVDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAVLT 174

Query: 181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTV 240
            +LNH D D+RKI+AWILGKASQNNP+VQKQVLELGAL+KL+ M KS FVEEA+KALY +
Sbjct: 175 RELNHVDPDVRKIAAWILGKASQNNPIVQKQVLELGALAKLVSMAKSDFVEEAIKALYAI 234

Query: 241 SSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 300
           SSL++NNL+GQE+FY EAG++MLQDIL NSS +IRL +KAV LV DLA  QLE   + E 
Sbjct: 235 SSLVQNNLSGQELFYAEAGEIMLQDILSNSSMDIRLQKKAVFLVSDLAVTQLEKPDEAER 294

Query: 301 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 360
           P F DR FLKSVV+L  S D+DLQEKAL A+KNLL LRTT+A VLK+FCGLD ALER+R 
Sbjct: 295 PFFGDRLFLKSVVNLIHSTDIDLQEKALIALKNLLLLRTTKAQVLKEFCGLDAALERMRM 354

Query: 361 QLQEVMLEEDQRDYAMDVEALRREVELIFFRKLGK 395
           +L+ +M EED RDYAMDVE LR +VEL F  KLGK
Sbjct: 355 KLKVLMEEEDHRDYAMDVEDLRSQVELTFLEKLGK 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819910|ref|XP_002877838.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297323676|gb|EFH54097.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 240/384 (62%), Positives = 305/384 (79%), Gaps = 11/384 (2%)

Query: 11  RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
           R + LLV++ + +    AE+VN  SS G+ WSTA+++      AE  +DS    ++ + D
Sbjct: 8   RCMLLLVVISL-VGCSIAEKVN--SSGGIVWSTARDE------AELVEDS--GVVIGEQD 56

Query: 71  ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
           ++DGGFSS+DGML WAIGHSDPA LKE A+D +++S  EL+KRQ+E+KEL+EKLK PSDA
Sbjct: 57  QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSDA 116

Query: 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190
            L+QIAIDDL NS+LSLED  RALQELLILVEPIDNANDLSK GGL V+ G+LNH DT++
Sbjct: 117 NLMQIAIDDLKNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176

Query: 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250
           RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS  EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSDEEAVKALFAVSALIRNNIAG 236

Query: 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310
           Q+MFY   G +ML+D++ N S +I+L RKAV LVGDLA+ QL+N  K E P+F+DRFFLK
Sbjct: 237 QDMFYAAHGYIMLKDVMSNGSLDIKLRRKAVFLVGDLAESQLQNTGKDELPIFKDRFFLK 296

Query: 311 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 370
           SVVDL    DLDLQEKAL AI+ LLQL++ E  +LK+FCGL+  LER++ QL+E M +E 
Sbjct: 297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQILKEFCGLEETLERMKLQLEESMADEY 356

Query: 371 QRDYAMDVEALRREVELIFFRKLG 394
           +RDYA DVE++R EVELIF +KLG
Sbjct: 357 KRDYAADVESIRGEVELIFRQKLG 380

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231095|ref|NP_190766.1| nucleotide exchange factor SIL1 [Arabidopsis thaliana] gi|4678927|emb|CAB41318.1| hypothetical protein [Arabidopsis thaliana] gi|20268764|gb|AAM14085.1| unknown protein [Arabidopsis thaliana] gi|21689669|gb|AAM67456.1| unknown protein [Arabidopsis thaliana] gi|332645350|gb|AEE78871.1| nucleotide exchange factor SIL1 [Arabidopsis thaliana]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/384 (61%), Positives = 306/384 (79%), Gaps = 11/384 (2%)

Query: 11  RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
           R ++LLV++ + +    AE+VN  SS G+ WS+ +++      AE  +DS    ++ + D
Sbjct: 8   RYVFLLVVISL-VGFSIAEKVN--SSGGMVWSSVRDE------AELVEDS--GVVIGEQD 56

Query: 71  ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
           ++DGGFSS+DGML WAIGHSDPA LKE A+D +++S  EL+KRQ+E+KEL+EKLK PS+A
Sbjct: 57  QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSNA 116

Query: 131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 190
           +L+QIAIDDLNNS+LSLED  RALQELLILVEPIDNANDLSK GGL V+ G+LNH DT++
Sbjct: 117 KLMQIAIDDLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176

Query: 191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250
           RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS  EEAVKAL+ VS+LIRNN+AG
Sbjct: 177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSTEEAVKALFAVSALIRNNIAG 236

Query: 251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310
           Q++F+   G +ML+D++ N S +++L RKAV LVGDLA+ QL+N  K E P+F+DR FLK
Sbjct: 237 QDLFFAAHGYIMLRDVMNNGSLDMKLRRKAVFLVGDLAESQLQNTEKDELPIFKDRLFLK 296

Query: 311 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 370
           SVVDL    DLDLQEKAL AI+ LLQL++ E  VLK+ CGL+ ALER++ QL+E M +E 
Sbjct: 297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQVLKESCGLEEALERMKLQLEESMADEY 356

Query: 371 QRDYAMDVEALRREVELIFFRKLG 394
           +RDYA DVE++R EVELIF +KLG
Sbjct: 357 KRDYAADVESIRGEVELIFRQKLG 380

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135818|gb|ADN33690.1| SIL1 [Cucumis melo subsp. melo]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/460 (55%), Positives = 305/460 (66%), Gaps = 82/460 (17%)

Query: 4   RRNRIASRALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAA 63
           RR+ +    LW  + L+I  A       N+SS  GL WS+AKED            + AA
Sbjct: 2   RRSLVVGLCLWFSLTLVIADA-------NDSSLEGLIWSSAKEDSA----------AAAA 44

Query: 64  AIVNDHDELDG-------------------------------GFSSIDGMLQ-------- 84
            +V+D D  DG                               G  SI  M++        
Sbjct: 45  PVVHDADGFDGGFSSLDSMLQWAIGPVTKQGLPDNSIDVSFAGLHSIRAMIEEFLLHPPS 104

Query: 85  ----------------WAI----------GHSDPAKLKETAQDVQRLSPSELKKRQMEIK 118
                           W I          GHSDPAKLK+TAQDV++LSPSE+KKRQ EIK
Sbjct: 105 RDKGVFLWLAEVCAVVWYIWGERNDRVFWGHSDPAKLKDTAQDVKQLSPSEIKKRQEEIK 164

Query: 119 ELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSV 178
           +L+E+LK PSDA+L+QIA+DDL NS+LSLED  RALQELL+LVEPIDNANDL KLGGL+V
Sbjct: 165 DLIEELKLPSDAKLMQIAVDDLKNSSLSLEDRHRALQELLVLVEPIDNANDLDKLGGLAV 224

Query: 179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALY 238
           L  +LNH D D+RKI+AWILGKASQNNP+VQKQVLELGAL+KL+ MVKS FVEEA+KALY
Sbjct: 225 LTRELNHVDPDVRKIAAWILGKASQNNPIVQKQVLELGALAKLVSMVKSDFVEEAIKALY 284

Query: 239 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 298
            +SSL++NNL+GQ++FY EAG+ MLQDIL NSS +IRL +KAV L  DL   QLE   + 
Sbjct: 285 AISSLVQNNLSGQKLFYAEAGETMLQDILSNSSMDIRLQKKAVFLASDLTVTQLEKPDEA 344

Query: 299 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358
           E P F DRFFLKSVV+L  S D+DLQEKAL A+KNLL LRTT+A VLK+FCGLD ALER+
Sbjct: 345 ERPFFGDRFFLKSVVNLIHSTDIDLQEKALIALKNLLLLRTTKAQVLKEFCGLDAALERM 404

Query: 359 RQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLGKVGT 398
           R +L+ +M EED RDYAMDVE LR +VE IF  KLGKV T
Sbjct: 405 RMKLKVLMEEEDHRDYAMDVEDLRSQVEQIFLEKLGKVPT 444

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574918|ref|XP_003555590.1| PREDICTED: nucleotide exchange factor SIL1-like [Glycine max]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/382 (61%), Positives = 274/382 (71%), Gaps = 23/382 (6%)

Query: 16  LVLLMITMAI----GRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDE 71
           L LL  T A+    G AE   N +S GL WSTA E+ D     +                
Sbjct: 7   LSLLFFTAAVAAETGGAE--PNLTSGGLLWSTAAEESDLAPPPD---------------- 48

Query: 72  LDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQ 131
            DGGFSS+DGMLQWAI HSDP KLKE+A+  QRL PSEL KRQ EIKE+MEK+K PSDA+
Sbjct: 49  -DGGFSSLDGMLQWAISHSDPGKLKESAEAQQRLPPSELYKRQFEIKEIMEKMKMPSDAE 107

Query: 132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIR 191
           L++IAI DLNN + SLED  RALQELL LVE IDNANDLSKLGGL  +  +L   D  IR
Sbjct: 108 LMRIAISDLNNVSTSLEDRHRALQELLELVESIDNANDLSKLGGLLAVREELYCSDPGIR 167

Query: 192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 251
            I+AW+LGKASQNN +VQ+Q+LELG LS+LMKMV S+ +EEA KALY VS+LIRN+LA Q
Sbjct: 168 TIAAWVLGKASQNNAIVQQQILELGVLSRLMKMVNSNSMEEANKALYAVSALIRNDLASQ 227

Query: 252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 311
            +FY EAG  MLQDIL N+S ++RL RKAV L+ DLA  QLEN+ + E P F D+  LK+
Sbjct: 228 GLFYAEAGGWMLQDILSNTSLDVRLRRKAVRLLADLAAYQLENVDREEQPFFNDQDLLKA 287

Query: 312 VVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQ 371
           VVDLT S DLDLQEKAL AIK+LLQLRTTEA V KDFC L  AL R+RQ L ++M +E Q
Sbjct: 288 VVDLTTSTDLDLQEKALVAIKSLLQLRTTEARVFKDFCALGDALNRMRQLLHDLMADEYQ 347

Query: 372 RDYAMDVEALRREVELIFFRKL 393
           RDY MDVE LR EVE  F RKL
Sbjct: 348 RDYVMDVENLRVEVEHTFQRKL 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462195|ref|XP_003601379.1| Nucleotide exchange factor SIL1 [Medicago truncatula] gi|355490427|gb|AES71630.1| Nucleotide exchange factor SIL1 [Medicago truncatula]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/321 (65%), Positives = 254/321 (79%)

Query: 73  DGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQL 132
           DGGF S+D ML WAI HSDP KLKE+AQ  Q+LSPSEL+KRQ+EIKE+MEK K  SDA+L
Sbjct: 55  DGGFPSMDSMLHWAISHSDPEKLKESAQSHQKLSPSELQKRQLEIKEIMEKTKMLSDAEL 114

Query: 133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRK 192
           ++IAI DLNN++ SLED  RAL ELL LVEP+DNANDL+KLGGL  +  +L H D+ IR 
Sbjct: 115 MKIAIKDLNNASTSLEDRYRALLELLELVEPLDNANDLNKLGGLHAVTQELKHYDSGIRA 174

Query: 193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 252
            +AW+LGKASQNNP  Q+QVLELG LS+L+ MVKSS +EE +KALY VS+L RNNLA QE
Sbjct: 175 TAAWVLGKASQNNPTFQQQVLELGVLSRLIAMVKSSSIEEGIKALYAVSALTRNNLANQE 234

Query: 253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 312
           +FY E G LMLQDIL N+S +I+L RKAV L+ DLA  QLEN++K EPP F ++  LKSV
Sbjct: 235 LFYAEGGGLMLQDILRNASIDIKLRRKAVLLLTDLADYQLENVNKDEPPFFNNQDLLKSV 294

Query: 313 VDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQR 372
           VDLTAS DLDLQEKAL AIK+LLQLRTT+A V +D C L  AL R ++ L ++M +EDQR
Sbjct: 295 VDLTASTDLDLQEKALVAIKSLLQLRTTKARVFRDLCALGDALNRTKELLHDLMADEDQR 354

Query: 373 DYAMDVEALRREVELIFFRKL 393
           DY MDVE +R EVE I+ RKL
Sbjct: 355 DYVMDVENVRIEVESIYHRKL 375

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
TAIR|locus:2083800	382	AT3G51980 "AT3G51980" [Arabido	0.920	0.976	0.588	8.4e-113
TAIR|locus:2185113	324	Fes1C "Fes1C" [Arabidopsis tha	0.661	0.827	0.290	6.7e-15
TAIR|locus:2084365	363	Fes1B "Fes1B" [Arabidopsis tha	0.671	0.749	0.285	7.6e-15
TAIR|locus:2083559	363	Fes1A "Fes1A" [Arabidopsis tha	0.716	0.798	0.254	7.6e-15
UNIPROTKB|F1NWG7	380	SIL1 "Uncharacterized protein"	0.681	0.726	0.273	2.8e-14
ASPGD|ASPL0000004813	218	AN6543 [Emericella nidulans (t	0.417	0.775	0.258	2.7e-12
UNIPROTKB|Q32KV6	462	SIL1 "Nucleotide exchange fact	0.479	0.419	0.276	6e-11
MGI|MGI:1932040	465	Sil1 "endoplasmic reticulum ch	0.718	0.625	0.294	1e-10
UNIPROTKB|Q9H173	461	SIL1 "Nucleotide exchange fact	0.471	0.414	0.302	3.6e-10
RGD|735103	465	Sil1 "SIL1 homolog, endoplasmi	0.464	0.404	0.306	3.7e-10

TAIR|locus:2083800 AT3G51980 "AT3G51980" [Arabidopsis thaliana (taxid:3702)]

 Score = 1113 (396.9 bits), Expect = 8.4e-113, P = 8.4e-113
 Identities = 226/384 (58%), Positives = 295/384 (76%)

Query:    11 RALWLLVLLMITMAIGRAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHD 70
             R ++LLV++ + +    AE+VN  SS G+ WS+ +++      AE  +DS    ++ + D
Sbjct:     8 RYVFLLVVISL-VGFSIAEKVN--SSGGMVWSSVRDE------AELVEDS--GVVIGEQD 56

Query:    71 ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDA 130
             ++DGGFSS+DGML WAIGHSDPA LKE A+D +++S  EL+KRQ+E+KEL+EKLK PS+A
Sbjct:    57 QIDGGFSSLDGMLHWAIGHSDPATLKEAAKDAEKMSLDELQKRQLELKELVEKLKMPSNA 116

Query:   131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDI 190
             +L+QIAIDDLNNS+LSLED  RALQELLILVEPIDNAND              NH DT++
Sbjct:   117 KLMQIAIDDLNNSSLSLEDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEV 176

Query:   191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 250
             RK++AW+LGKASQNNP VQ+QVLELGAL+ L+KMV SS  EEAVKAL+ VS+LIRNN+AG
Sbjct:   177 RKLAAWVLGKASQNNPFVQEQVLELGALTTLIKMVNSSSTEEAVKALFAVSALIRNNIAG 236

Query:   251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK 310
             Q++F+   G +ML+D++ N S +++L RKAV LVGDLA+ QL+N  K E P+F+DR FLK
Sbjct:   237 QDLFFAAHGYIMLRDVMNNGSLDMKLRRKAVFLVGDLAESQLQNTEKDELPIFKDRLFLK 296

Query:   311 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 370
             SVVDL    DLDLQEKAL AI+ LLQL++ E  VLK+ CGL+ ALER++ QL+E M +E 
Sbjct:   297 SVVDLIVVLDLDLQEKALTAIQTLLQLKSIEPQVLKESCGLEEALERMKLQLEESMADEY 356

Query:   371 QRDYAMDVEALRREVELIFFRKLG 394
             +RDYA DVE++R EVELIF +KLG
Sbjct:   357 KRDYAADVESIRGEVELIFRQKLG 380

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2185113 Fes1C "Fes1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 6.7e-15, P = 6.7e-15
 Identities = 84/289 (29%), Positives = 138/289 (47%)

Query:    80 DGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 139
             DG+L+W++ HSD  +   T Q  +       +  Q +  +++++LK  +  Q++Q     
Sbjct:     9 DGLLKWSLSHSDGTR--PTCQLSEEDRKWFAEAMQSQTVDVVKRLKEIT--QVLQTPQQV 64

Query:   140 LNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILG 199
             L    ++ +D +  L EL   VE ID AND               + + +IR  SA ++ 
Sbjct:    65 LEAHEVTPQDIEGLLDELQEHVESIDMANDLHSVGGLVPLLGYLKNSNANIRAKSADVVS 124

Query:   200 KASQNNPLVQKQVLELGAL-SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258
                +NNP  Q+ V+E   L S L++    + +    +AL  +SSLIRNN  G   F +  
Sbjct:   125 TIVENNPRSQESVMEANGLESLLLRFTSDTDMHSRTQALGAISSLIRNNKPGITGFRIAN 184

Query:   259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV-DLTA 317
             G   L+D L   S  +R  RKA++L+  L +   EN    +  +    F L  ++  L +
Sbjct:   185 GYSGLKDALETDS--VRFQRKALNLLHYLLQ---ENDSDSDIAI---EFGLHHLMMHLVS 236

Query:   318 SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTAL--ERLRQQLQE 364
             S D D++E   AA++ LL+L   +A      CG       ERLRQ L++
Sbjct:   237 SFDADVRE---AALRGLLEL--VKARKDCSTCGSSIVKGDERLRQILKD 280

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2084365 Fes1B "Fes1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 7.6e-15, P = 7.6e-15
 Identities = 85/298 (28%), Positives = 137/298 (45%)

Query:    80 DGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDD 139
             DG+L+W++ HSD A       +  R     ++  Q    + + ++K  S  Q++++    
Sbjct:     9 DGLLKWSLSHSDGASSSSRISEEDR--QWFVEAMQAHTIDSISRMKVIS--QIMKMPEQV 64

Query:   140 LNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILG 199
             L    ++ +D +  L EL   VE ID AND               + +  IR  SA +L 
Sbjct:    65 LEAQGVTPDDLEGMLAELQEHVESIDLANDLHSIGGLVPLLSYLKNSNAKIRAKSADVLT 124

Query:   200 KASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 258
                QNNP  Q+ V+E      L+   +    +    KAL  +SSLIRNN  G   F +  
Sbjct:   125 TVVQNNPRSQQLVMEANGFEPLLTNFIADPDIRVRTKALGAISSLIRNNQPGITAFRLAN 184

Query:   259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 318
             G   L+D L + +  +R  RKA++L+  L   Q  N    +  + RD  F + ++ L ++
Sbjct:   185 GYAGLRDALVSDT--VRFQRKALNLLHYLL--QESNS---DCKIVRDLGFPRIMIHLASN 237

Query:   319 ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE------VMLEED 370
              D +++E AL   + LL+L   E++       LD     LRQ L+E      VM +ED
Sbjct:   238 QDFEVREFAL---RGLLELAREESVR-----NLDRGDVNLRQLLEERTRRIIVMSDED 287

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2083559 Fes1A "Fes1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 7.6e-15, P = 7.6e-15
 Identities = 79/311 (25%), Positives = 152/311 (48%)

Query:    80 DGMLQWAIGHSDPAK-LKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAID 138
             DG+L+W++ H+D  +  ++ +++ ++     ++ + +++ + M+++       ++Q    
Sbjct:     9 DGLLKWSLSHADGTRPTRQLSEEDRKWFMEAMQSQTVDVVKRMKEITL-----VMQTPEQ 63

Query:   139 DLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWIL 198
              L    ++ ED Q  L EL   VE ID AND               +   +IR  +A ++
Sbjct:    64 VLVEHGVTPEDIQDLLDELQEHVESIDMANDLHSIGGLVPLLSFLKNSHANIRAKAADVV 123

Query:   199 GKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE 257
                 QNNP  Q+ V+E  AL  L+    S   +    +AL  +SSLIR+N  G   F + 
Sbjct:   124 STIVQNNPRSQELVMETNALESLLSNFTSDTDIHARTQALGAISSLIRHNKPGVTAFKLA 183

Query:   258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 317
              G   L+D L + S  +R  RKA++L+  L + + ++   +   L     F + ++ L +
Sbjct:   184 NGYAGLRDALASDS--VRFQRKALNLLQYLLQ-EDDSDRSIATGLG----FPRVMMHLAS 236

Query:   318 SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMD 377
             S D +++E   AA++ LL+L   +         +D + E+LRQ L+E  ++        D
Sbjct:   237 SDDAEIRE---AALRGLLELSREKN---DGSSSIDKSDEKLRQLLEE-RIKGITLMSQED 289

Query:   378 VEALRREVELI 388
             +E ++ E +L+
Sbjct:   290 LETVKEERQLV 300

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|F1NWG7 SIL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 207 (77.9 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 83/303 (27%), Positives = 147/303 (48%)

Query:    93 AKLKETAQDVQRLSPSELKK--RQME-IKELMEKL--KTPSDAQLIQIAIDDLNNSTLSL 147
             AK+KE+ +  +     E++K  R +E +KE  EKL  K  +D +++   I   N+S  +L
Sbjct:    61 AKMKESEKAERMAHEEEVRKKFRPIEQLKEEFEKLNVKMETDYEIMDKLISKFNSSASTL 120

Query:   148 EDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPL 207
             ++   AL +L   V  +DNA D              N  +  +++ +A++LG A  +NP 
Sbjct:   121 DEKVAALYDLEYYVHQVDNAKDFLSMGGLRLVIEGLNSTEAVLKEHAAFVLGAALSSNPK 180

Query:   208 VQKQVLELGALSKLMKMVKSSFVEEAVK--ALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 265
             VQ + +E GAL KL+ +V +    +AVK  AL+ +SSL+R+    Q+ F    G  +L+ 
Sbjct:   181 VQIEAIEGGALQKLLVIVATE-QPQAVKKKALFALSSLLRHFPYAQQQFLKLGGLQVLRG 239

Query:   266 IL---GNSSFEIR----LHRKAVSLV-------GDLAKCQLENMHKVE-PPLFRDRFFLK 310
             +    G S+  +R    L+   V  +       GD A+ +++   +V+  P   ++ +  
Sbjct:   240 LFRQPGTSALCVRAVTLLYDLFVEKMLLEDSQHGDHAEEKVQQYRRVQLVPAVLEQDWCV 299

Query:   311 SVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEED 370
             +V  L A  + D +EK L A+  L++         +    L   L  LR + +E+   E 
Sbjct:   300 AVPGLLALPEHDAREKVLKAVAVLMEFCRER---FRGDAALGATLGLLRSEYEELAAAE- 355

Query:   371 QRD 373
             +RD
Sbjct:   356 RRD 358

GO:0005783 "endoplasmic reticulum" evidence=IEA

ASPGD|ASPL0000004813 AN6543 [Emericella nidulans (taxid:162425)]

 Score = 171 (65.3 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 45/174 (25%), Positives = 84/174 (48%)

Query:    78 SIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAI 137
             +++ +L+W I +S   +    + +    + S+  +  +  + L      PS+A L++ A+
Sbjct:     4 NMNNLLKWGIQNSTATQQTSDSNN----NASQAPRSNITPEMLSALFGGPSEADLMKAAM 59

Query:   138 DDLNNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWI 197
             + L +  + LE+   A      L+E IDNAN+               H + D+R+++AW 
Sbjct:    60 EALRSDEVDLENKLIAFDNFEQLIESIDNANNLEPLGLWTPLVELLKHEEPDMRRMAAWC 119

Query:   198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA-VKALYTVSSLIRNNLAG 250
             +G A QNN   Q +++ + A+  L+ M     V     KA+Y +SS +RN   G
Sbjct:   120 IGTAVQNNEKAQDKLIVMNAIPTLVSMSTQDPVPAVRKKAVYALSSAVRNYQPG 173

GO:0005634 "nucleus" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0000774 "adenyl-nucleotide exchange factor activity" evidence=IEA

GO:0002181 "cytoplasmic translation" evidence=IEA

UNIPROTKB|Q32KV6 SIL1 "Nucleotide exchange factor SIL1" [Bos taurus (taxid:9913)]

 Score = 180 (68.4 bits), Expect = 6.0e-11, P = 6.0e-11
 Identities = 55/199 (27%), Positives = 104/199 (52%)

Query:    93 AKLKETAQDVQRLSPSELKKRQME-IKELMEKLKT--PSDAQLIQIAIDDLNNSTLSLED 149
             A+++ + +D +R +  +   R +E +K+  E+L     +D Q++   I+  N+S+ SLE+
Sbjct:   143 AEMENSKEDQERQAKVKRLFRPIEELKKDFEELNVVIETDMQIMVRLINKFNSSSSSLEE 202

Query:   150 SQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPLVQ 209
                AL +L   V  +DNA D              N  +  +++ +A++LG A  +NP VQ
Sbjct:   203 KIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQ 262

Query:   210 KQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 268
              + +E GAL KL+ ++ +   +    KAL+ + SL+R+    Q+ F    G  +L+ ++ 
Sbjct:   263 VEAIEGGALQKLLVILATEQPLTTKKKALFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQ 322

Query:   269 NSSFEIRLHRKAVSLVGDL 287
                 E+ L  + V+L+ DL
Sbjct:   323 EKGMEV-LAVRVVTLLYDL 340

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

MGI|MGI:1932040 Sil1 "endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 91/309 (29%), Positives = 142/309 (45%)

Query:    94 KLKETAQDVQRLSP-SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQR 152
             +L   A   Q   P  ELKK   E  EL   L+T  D Q++   I+  N+S+ SLE+   
Sbjct:   154 ELARQATVKQLFRPIEELKK---EFDELNVVLET--DMQIMVRLINKFNSSSSSLEEKVA 208

Query:   153 ALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPLVQKQV 212
             AL +L   V  +DNA D              N  +  +++ +A++LG A  +NP VQ + 
Sbjct:   209 ALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEA 268

Query:   213 LELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271
             +E GAL KL+ ++ ++    A K  L+ + SL+R+    Q+ F    G  +L+ ++   S
Sbjct:   269 IEGGALQKLLVILATNQPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKS 328

Query:   272 FEIRLHRKAVSLVGDLAKCQLENMH-KVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 330
              ++ L  + V+L+ DL     E M  + E  L +D    K            LQE+    
Sbjct:   329 AKV-LAVRVVTLLYDLVT---EKMFAEEEAELTQDSSPEKLQQYRQVQLLPGLQEQGWCE 384

Query:   331 IK-NLLQLRTTEAL--VLKDFCGL-DTALERLRQQLQ-EVMLEEDQRDY-AMDVEALRRE 384
             I   LL L   +A   VL+    L  T  +R RQ LQ    L   Q +Y A+    L+  
Sbjct:   385 ITAQLLALPEHDAREKVLQTLGALLTTCRDRYRQDLQLSRTLGRLQAEYQALASLELQEG 444

Query:   385 VELIFFRKL 393
              +  +FR+L
Sbjct:   445 EDDGYFREL 453

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q9H173 SIL1 "Nucleotide exchange factor SIL1" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 3.6e-10, P = 3.6e-10
 Identities = 63/208 (30%), Positives = 104/208 (50%)

Query:    93 AKLKETAQDVQRLSPSELKKRQMEIKEL---MEKLKTP---------SDAQLIQIAIDDL 140
             AK KE A+ ++  S  E K RQ E+K L   +E+LK           +D Q++   I+  
Sbjct:   136 AKFKEGAE-ME--SSKEDKARQAEVKRLFRPIEELKKDFDELNVVIETDMQIMVRLINKF 192

Query:   141 NNSTLSLEDSQRALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGK 200
             N+S+ SLE+   AL +L   V  +DNA D              N  +  +++ +A++LG 
Sbjct:   193 NSSSSSLEEKIAALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGA 252

Query:   201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMFYVEAG 259
             A  +NP VQ + +E GAL KL+ ++ +     A K  L+ + SL+R+    Q  F    G
Sbjct:   253 AFSSNPKVQVEAIEGGALQKLLVILATEQPLTAKKKVLFALCSLLRHFPYAQRQFLKLGG 312

Query:   260 DLMLQDILGNSSFEIRLHRKAVSLVGDL 287
               +L+ ++     E+ L  + V+L+ DL
Sbjct:   313 LQVLRTLVQEKGTEV-LAVRVVTLLYDL 339

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0006457 "protein folding" evidence=NAS

GO:0051082 "unfolded protein binding" evidence=NAS

RGD|735103 Sil1 "SIL1 homolog, endoplasmic reticulum chaperone (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 3.7e-10, P = 3.7e-10
 Identities = 60/196 (30%), Positives = 98/196 (50%)

Query:    94 KLKETAQDVQRLSP-SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQR 152
             +L   A   Q   P  ELKK   E  EL   L+T  D Q++   I+  N+S+ SLE+   
Sbjct:   154 ELARQATVKQLFRPIEELKK---EFDELNVVLET--DMQIMVRLINKFNSSSSSLEEKVA 208

Query:   153 ALQELLILVEPIDNANDXXXXXXXXXXXXXXNHPDTDIRKISAWILGKASQNNPLVQKQV 212
             AL +L   V  +DNA D              N  +  +++ +A++LG A  +NP VQ + 
Sbjct:   209 ALFDLEYYVHQMDNAQDLLSFGGLQVVINGLNSTEPLVKEYAAFVLGAAFSSNPKVQVEA 268

Query:   213 LELGALSKLMKMVKSSFVEEAVK-ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271
             +E GAL KL+ ++ +     A K  L+ + SL+R+    Q+ F    G  +L+ ++   S
Sbjct:   269 IEGGALQKLLVILATEQPLPAKKKVLFALCSLLRHFPYAQQQFLKLGGLQVLRSLVQEKS 328

Query:   272 FEIRLHRKAVSLVGDL 287
              ++ L  + V+L+ DL
Sbjct:   329 AKV-LAVRVVTLLYDL 343

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	405
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-04
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-04
pfam08609	87	pfam08609, Fes1, Nucleotide exchange factor Fes1	0.001
COG0216	363	COG0216, PrfA, Protein chain release factor A [Tra	0.002

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 2/99 (2%)

Query: 147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 206
             ++  AL  L       DN   + + GGL  LV  L   D ++ K + W L   +    
Sbjct: 24  QREAAWALSNLSAGNN--DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81

Query: 207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 245
             +  VLE G + KL+ ++ SS  +    A   +S+L  
Sbjct: 82  DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 228
            + + GGL  LV  L+  D ++++ +AW L   S  N    + V+E G L  L++++KS 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 229 ---FVEEAVKALYTVSS 242
               V+ A+ AL  +++
Sbjct: 62  DEEVVKAALWALRNLAA 78

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|219931 pfam08609, Fes1, Nucleotide exchange factor Fes1

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 77  SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIA 136
            +++ +L+W+I         E +       PS  + R ++ + L +    PSDA L++ A
Sbjct: 3   KNMNNLLKWSI---------ENSTGAGSSPPSIPQPRSLDPEMLDQLFGGPSDADLMKAA 53

Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDL 170
           ++ + +  ++LED   A     +L+E IDNAN+L
Sbjct: 54  MEVITDEEVTLEDKVIAFDNFEMLIENIDNANNL 87

Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity. Length = 87

>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis]

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 89  HSDPAKLKETAQDVQRLSP-----SELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNS 143
            SDP + ++ +++   L P      E KK Q ++++  E L    D ++ ++A +++   
Sbjct: 29  ISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKEL 88

Query: 144 TLSLEDSQRALQELLILVEPIDNAN 168
              +E+ +  L+ LL+  +P D+ N
Sbjct: 89  EAKIEELEEELKILLLPKDPNDDKN 113

Length = 363

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.93
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.93
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.84
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.84
PF08609	92	Fes1: Nucleotide exchange factor Fes1; InterPro: I	99.75
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.68
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.58
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.58
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.42
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.26
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.26
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.21
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.2
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.0
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.0
KOG4199	461	consensus Uncharacterized conserved protein [Funct	98.98
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	98.95
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.89
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.88
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.81
KOG1048	717	consensus Neural adherens junction protein Plakoph	98.68
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.48
PRK09687	280	putative lyase; Provisional	98.34
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.33
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.33
PRK09687	280	putative lyase; Provisional	98.32
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.28
KOG1048	717	consensus Neural adherens junction protein Plakoph	98.19
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.1
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.1
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.06
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.06
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	98.06
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.03
PF05536	543	Neurochondrin: Neurochondrin	98.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.99
PF08045	257	CDC14: Cell division control protein 14, SIN compo	97.99
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	97.97
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	97.97
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	97.94
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.88
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	97.85
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.84
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.81
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.79
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.78
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	97.73
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.66
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.59
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.54
KOG1293	678	consensus Proteins containing armadillo/beta-caten	97.53
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.4
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	97.4
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.39
PTZ00429	746	beta-adaptin; Provisional	97.32
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.28
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.26
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.26
PTZ00429	746	beta-adaptin; Provisional	97.25
COG5369	743	Uncharacterized conserved protein [Function unknow	97.22
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	97.14
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.11
PF05536	543	Neurochondrin: Neurochondrin	97.09
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.07
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.05
KOG4646	173	consensus Uncharacterized conserved protein, conta	97.05
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.89
TIGR02270	410	conserved hypothetical protein. Members are found	96.84
COG5369	743	Uncharacterized conserved protein [Function unknow	96.82
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.8
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.79
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.77
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.66
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.59
KOG3678	832	consensus SARM protein (with sterile alpha and arm	96.54
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.51
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.48
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.45
TIGR02270	410	conserved hypothetical protein. Members are found	96.37
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.35
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.3
PF05004	309	IFRD: Interferon-related developmental regulator (	96.24
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.12
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.11
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.08
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.04
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.02
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	95.9
COG1413	335	FOG: HEAT repeat [Energy production and conversion	95.85
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.8
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.76
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.72
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.68
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.56
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.51
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	95.38
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.36
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	95.35
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.25
KOG1242	569	consensus Protein containing adaptin N-terminal re	95.24
KOG0212	675	consensus Uncharacterized conserved protein [Funct	95.22
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.12
COG1413	335	FOG: HEAT repeat [Energy production and conversion	95.01
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.96
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.89
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.71
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.7
KOG2973	353	consensus Uncharacterized conserved protein [Funct	94.69
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	94.6
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	94.57
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.53
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.51
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.23
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.22
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.12
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.02
KOG3036	293	consensus Protein involved in cell differentiation	93.99
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	93.89
KOG2734	536	consensus Uncharacterized conserved protein [Funct	93.59
KOG4413	524	consensus 26S proteasome regulatory complex, subun	93.59
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.42
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	93.38
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	93.37
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.24
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	93.17
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	92.89
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	92.23
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	92.11
KOG2025	892	consensus Chromosome condensation complex Condensi	92.0
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	91.79
KOG2973	353	consensus Uncharacterized conserved protein [Funct	91.59
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	91.4
KOG2956	516	consensus CLIP-associating protein [General functi	91.33
KOG2734	536	consensus Uncharacterized conserved protein [Funct	91.13
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.08
KOG1242	569	consensus Protein containing adaptin N-terminal re	91.08
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	90.94
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	90.85
KOG0212	675	consensus Uncharacterized conserved protein [Funct	90.81
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	90.8
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.79
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	90.76
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	90.65
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	90.57
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	90.36
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	90.36
cd03561	133	VHS VHS domain family; The VHS domain is present i	90.28
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	90.18
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	90.14
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	89.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	89.95
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	89.9
KOG0414	1251	consensus Chromosome condensation complex Condensi	89.86
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	89.56
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.37
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	89.27
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	89.12
KOG2032	533	consensus Uncharacterized conserved protein [Funct	89.09
KOG0567	289	consensus HEAT repeat-containing protein [General	89.01
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	88.91
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	88.86
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	88.78
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	88.75
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	88.71
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	88.5
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	88.39
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	88.3
KOG2259	823	consensus Uncharacterized conserved protein [Funct	88.25
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	88.19
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	87.67
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	87.42
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	87.17
KOG4653	982	consensus Uncharacterized conserved protein [Funct	86.8
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	86.77
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.7
KOG2259	823	consensus Uncharacterized conserved protein [Funct	86.56
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	86.52
PF01365	207	RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodi	86.48
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	86.08
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	86.05
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	86.02
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	85.92
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	85.76
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	85.25
cd03561	133	VHS VHS domain family; The VHS domain is present i	84.89
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	84.72
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	84.2
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	83.7
KOG2062	929	consensus 26S proteasome regulatory complex, subun	83.26
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	83.06
KOG3036	293	consensus Protein involved in cell differentiation	82.76
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	82.18
COG5098	1128	Chromosome condensation complex Condensin, subunit	81.99
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	81.72
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	81.67
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	81.5
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	81.48
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	81.04
COG5116	926	RPN2 26S proteasome regulatory complex component [	80.87
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	80.52
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	80.46
PF05004	309	IFRD: Interferon-related developmental regulator (	80.15
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	80.04

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.2e-41  Score=331.26  Aligned_cols=312  Identities=33%  Similarity=0.461  Sum_probs=259.9

Q ss_pred             CCCChHHHHHHHhhcC--CCccccchh--------hccCCCCHHHHHHhHHHHHHHHHHcC---------CCCHHHHHHH
Q 015496           75 GFSSIDGMLQWAIGHS--DPAKLKETA--------QDVQRLSPSELKKRQMEIKELMEKLK---------TPSDAQLIQI  135 (405)
Q Consensus        75 ~~~~l~~LLkwsi~~s--~~~~~~~~~--------~~~~~~s~e~l~~r~~~L~~a~~~~~---------~~~d~~lmk~  135 (405)
                      ..++|+|+++|+..++  .|+.+....        .+.+  ++   +.|++|+.++|..-+         +....+.|+.
T Consensus        10 ~~~~~~gl~~ws~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---ke~~k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~   84 (342)
T KOG2160|consen   10 RPPNQEGLLEWSLQLSQSLGSRPDIQISGDLGMAEAKLK--DE---KEDRKWLQELMQAHTEDQKDFVEDMKVISDVMSM   84 (342)
T ss_pred             cCccccchhhcccccccccCCCchhhhccchhhhhhhcc--Cc---ccchHHHHHHHHHhhhhhhhhcccchhHHHHHHh
Confidence            3678999999999998  554432110        1111  11   358999999987653         1222345555


Q ss_pred             -HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHH
Q 015496          136 -AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE  214 (405)
Q Consensus       136 -al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle  214 (405)
                       ++..+++++.++++|+.||++|+++||+||||++|++.|||.+++.+|+++++++|+.|+|+||+++||||++|+.|++
T Consensus        85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E  164 (342)
T KOG2160|consen   85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE  164 (342)
T ss_pred             hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence             6777888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015496          215 LGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE  293 (405)
Q Consensus       215 ~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~  293 (405)
                      .|++++|+.+|++++ ..++.||+||||+++||+++++..|...+|+..|+.++++++.++++++|+++++++|...   
T Consensus       165 ~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~---  241 (342)
T KOG2160|consen  165 LGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE---  241 (342)
T ss_pred             cccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---
Confidence            999999999998765 4788999999999999999999999999999999999999777999999999999999964   


Q ss_pred             cCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHHhhhchhhhh
Q 015496          294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRD  373 (405)
Q Consensus       294 ~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~~~~~q~~  373 (405)
                        +......+...++...+..+..+.+.++.|+++.++..++..-......+....++...|..+-+.+++....+.+.+
T Consensus       242 --~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~~~~l~e~l~~~~q~~~~~~~~~~e~~  319 (342)
T KOG2160|consen  242 --DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVSLLNLEELLKSLIQIISDHAALEEERQ  319 (342)
T ss_pred             --hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              445555777789999999999999999999999999988865333333455566776777777666665555567899


Q ss_pred             hHHHHHHHHHHHHHHHhhhcccc
Q 015496          374 YAMDVEALRREVELIFFRKLGKV  396 (405)
Q Consensus       374 ~~~d~~~l~~e~~~~~~~kl~~i  396 (405)
                      |+.++...+.|+..+++++++++
T Consensus       320 l~~~l~~~~~e~~~~~~~~~~~~  342 (342)
T KOG2160|consen  320 LVNSLWEICGEVPSILRKLLGSL  342 (342)
T ss_pred             HHHHHHHHhcccHHHHHHHhccC
Confidence            99999999999999999997653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2.9e-33  Score=270.84  Aligned_cols=252  Identities=16%  Similarity=0.191  Sum_probs=226.4

Q ss_pred             CHHHHHHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015496          146 SLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM  222 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDn--A~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll  222 (405)
                      +.|++..|.-.++.++...++  ....+..|.+|.++.++ ++...-+++.|+|+|+|++++...+++.|+++|++|.++
T Consensus        84 Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi  163 (526)
T COG5064          84 DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI  163 (526)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence            567888888889888755443  66899999999999999 577888999999999999999999999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchh
Q 015496          223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL  302 (405)
Q Consensus       223 ~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~  302 (405)
                      +||.+++..++.+++|||+|++++++.+++.++++|.+++|+.++.+...+.++.|++.|+|+|||+++  ++.|+... 
T Consensus       164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk--nP~P~w~~-  240 (526)
T COG5064         164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK--NPPPDWSN-  240 (526)
T ss_pred             HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC--CCCCchHH-
Confidence            999999999999999999999999999999999999999999999887667899999999999999986  55554322 


Q ss_pred             HHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHH---------HH---hhh-ch
Q 015496          303 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL---------QE---VML-EE  369 (405)
Q Consensus       303 l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~---------~~---l~~-~~  369 (405)
                      +  ...++.|.+|+.+.|+++.-.|+||+++|++++.++.+.+. +.|++++|..|..+.         |+   +++ +|
T Consensus       241 i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avl-d~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D  317 (526)
T COG5064         241 I--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVL-DVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSD  317 (526)
T ss_pred             H--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHH-hcCCcHHHHHHhcCccccccCHHHHhhcCeeecCc
Confidence            2  24789999999999999999999999999999999999999 999999999998654         33   667 89


Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhccccccchhccC
Q 015496          370 DQRDYAMDVEALRREVELIFFRKLGKVGTRLCWNK  404 (405)
Q Consensus       370 ~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~~  404 (405)
                      +||+...+|++|+.++-++.++| +.|+||+|||-
T Consensus       318 ~QTqviI~~G~L~a~~~lLs~~k-e~irKEaCWTi  351 (526)
T COG5064         318 DQTQVIINCGALKAFRSLLSSPK-ENIRKEACWTI  351 (526)
T ss_pred             cceehheecccHHHHHHHhcChh-hhhhhhhheee
Confidence            99999999999999999999999 99999999983

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-31  Score=273.44  Aligned_cols=250  Identities=16%  Similarity=0.207  Sum_probs=221.6

Q ss_pred             CHHHHHHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015496          146 SLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM  222 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDn--A~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll  222 (405)
                      +.+.+..+...+..+.....|  -+..+..|.+|.+|.+|. +.++.+|+.|||+|+|+|+++++.++.|++.|++|.|+
T Consensus        79 ~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi  158 (514)
T KOG0166|consen   79 DPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFI  158 (514)
T ss_pred             CHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHH
Confidence            566788899999998866553  455666699999999996 56799999999999999999999999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchh
Q 015496          223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL  302 (405)
Q Consensus       223 ~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~  302 (405)
                      +|+.+++..++++|+|||||++++++..++.++++|++++|+.++..+ ....+.|.++|+|+|||+++  ++.|.   .
T Consensus       159 ~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~-~~~~~lRn~tW~LsNlcrgk--~P~P~---~  232 (514)
T KOG0166|consen  159 QLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS-DKLSMLRNATWTLSNLCRGK--NPSPP---F  232 (514)
T ss_pred             HHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc-cchHHHHHHHHHHHHHHcCC--CCCCc---H
Confidence            999999999999999999999999999999999999999999999876 34679999999999999976  33332   1


Q ss_pred             HHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHH---------HH---hhh-ch
Q 015496          303 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL---------QE---VML-EE  369 (405)
Q Consensus       303 l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~---------~~---l~~-~~  369 (405)
                      -.-..+++.|..+|.+.|.+++..|+|||++|+.++.+..+++. +.|+.++|..|..+.         |+   +++ +|
T Consensus       233 ~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi-~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d  311 (514)
T KOG0166|consen  233 DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVI-DAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD  311 (514)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH-HccchHHHHHHHcCCCcccccHHHhhccceeeccH
Confidence            12247899999999999999999999999999999999999999 888989988888544         33   556 89


Q ss_pred             hhhhhHHHHHHHHHHHHHHH-hhhccccccchhcc
Q 015496          370 DQRDYAMDVEALRREVELIF-FRKLGKVGTRLCWN  403 (405)
Q Consensus       370 ~q~~~~~d~~~l~~e~~~~~-~~kl~~i~~~~~~~  403 (405)
                      +||+.+.|+++|++...+++ +.| ++|+|||||+
T Consensus       312 ~QTq~vi~~~~L~~l~~ll~~s~~-~~ikkEAcW~  345 (514)
T KOG0166|consen  312 EQTQVVINSGALPVLSNLLSSSPK-ESIKKEACWT  345 (514)
T ss_pred             HHHHHHHhcChHHHHHHHhccCcc-hhHHHHHHHH
Confidence            99999999999999999999 677 8899999997

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.8e-25  Score=226.66  Aligned_cols=261  Identities=18%  Similarity=0.229  Sum_probs=224.0

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      +...++.+... .++.-+..|...|.++.. .-+..+.+++.|.+|.|+.+|.+++..|+++|+|+|||++...|.+++.
T Consensus       111 v~~lV~~l~~~-~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~  189 (514)
T KOG0166|consen  111 VPRLVEFLSRD-DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY  189 (514)
T ss_pred             HHHHHHHHccC-CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence            34455666533 256778889999999874 4578899999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          212 VLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       212 vle~G~lp~Ll~LL~s~~~-~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      ++++|++++|+.++..+.. .....+.|+|||+||+..|.-..-.-...++.|..++.+.  |..+...|+|+++||+. 
T Consensus       190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyLsd-  266 (514)
T KOG0166|consen  190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYLTD-  266 (514)
T ss_pred             HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhc-
Confidence            9999999999999988765 6788999999999999743322222356889999999986  77899999999999995 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH-H----HHH-
Q 015496          291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ-Q----LQE-  364 (405)
Q Consensus       291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~-~----~~~-  364 (405)
                          ..++..+.+++.|+++.|+++|.+.+..++..|++++++++.+++.+.+.+. ++|+.|.|..|.. +    ++. 
T Consensus       267 ----g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi-~~~~L~~l~~ll~~s~~~~ikkE  341 (514)
T KOG0166|consen  267 ----GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVI-NSGALPVLSNLLSSSPKESIKKE  341 (514)
T ss_pred             ----CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHH-hcChHHHHHHHhccCcchhHHHH
Confidence                4678888999999999999999999999999999999999999999999999 8888888887775 3    222 


Q ss_pred             -------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          365 -------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       365 -------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                             +.. +..|.+++.|.+.++...++|...= ..++|||||.
T Consensus       342 AcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~e-f~~rKEAawa  387 (514)
T KOG0166|consen  342 ACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAE-FDIRKEAAWA  387 (514)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccc-hHHHHHHHHH
Confidence                   222 5679999999999999999999998 7999999995

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.93  E-value=1.8e-25  Score=216.92  Aligned_cols=243  Identities=18%  Similarity=0.255  Sum_probs=207.3

Q ss_pred             HHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC
Q 015496          151 QRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF  229 (405)
Q Consensus       151 ~~AL~~L~~Lve~i-DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~  229 (405)
                      ..|...|.++...- +.....++.|.+|.++++|.+++.++|.+|.|+|||+|...+.+++.|+++|++.+++.++.+..
T Consensus       133 fEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~  212 (526)
T COG5064         133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSA  212 (526)
T ss_pred             HHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhcc
Confidence            45666677665443 44567788999999999999999999999999999999999999999999999999999998765


Q ss_pred             H--HHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015496          230 V--EEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR  306 (405)
Q Consensus       230 ~--~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~  306 (405)
                      .  ++...+.|.|||+||+. |+--..- -.-.++.|.+++.+.  |+.+...|+|+|++|..     ...+....+.+.
T Consensus       213 ~~ismlRn~TWtLSNlcRGknP~P~w~~-isqalpiL~KLiys~--D~evlvDA~WAiSYlsD-----g~~E~i~avld~  284 (526)
T COG5064         213 IHISMLRNATWTLSNLCRGKNPPPDWSN-ISQALPILAKLIYSR--DPEVLVDACWAISYLSD-----GPNEKIQAVLDV  284 (526)
T ss_pred             chHHHHHHhHHHHHHhhCCCCCCCchHH-HHHHHHHHHHHHhhc--CHHHHHHHHHHHHHhcc-----CcHHHHHHHHhc
Confidence            4  66789999999999994 3322221 134689999999885  67789999999999985     345677889999


Q ss_pred             CcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHH------------hhh-chhhhh
Q 015496          307 FFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE------------VML-EEDQRD  373 (405)
Q Consensus       307 g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~------------l~~-~~~q~~  373 (405)
                      |..++|+++|.+++..++..+++.+++++.+++.+.+++. .||..+.+..|..+.++            +.. +-+|.+
T Consensus       285 g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI-~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiq  363 (526)
T COG5064         285 GIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVII-NCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQ  363 (526)
T ss_pred             CCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhe-ecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHH
Confidence            9999999999999999999999999999999988999999 99999998888865543            111 456999


Q ss_pred             hHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          374 YAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       374 ~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                      ++.|....+-.+++|...-+ +|+|||||.
T Consensus       364 avid~nliPpLi~lls~ae~-k~kKEACWA  392 (526)
T COG5064         364 AVIDANLIPPLIHLLSSAEY-KIKKEACWA  392 (526)
T ss_pred             HHHhcccchHHHHHHHHHHH-HHHHHHHHH
Confidence            99999999999999999995 999999995

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.84  E-value=3.6e-19  Score=206.10  Aligned_cols=251  Identities=14%  Similarity=0.079  Sum_probs=207.3

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496          136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL  215 (405)
Q Consensus       136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~  215 (405)
                      .++.+.+.+ +.-.+..+...|..++.++.++..|.+.|++++||.+|.+.+.++|..++|+|.+++.++++.++.+.+.
T Consensus       367 LV~Llr~k~-p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~  445 (2102)
T PLN03200        367 LVKLLKPRD-TKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGR  445 (2102)
T ss_pred             HHHHhCCCC-CchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            445555554 2223577888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496          216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  295 (405)
Q Consensus       216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~  295 (405)
                      |++|.|+++|.+++..++..|+|+|+++..+++..+..++++||+++|+++|.++  +.++|..|+|+|+||+.+     
T Consensus       446 ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL~NLa~~-----  518 (2102)
T PLN03200        446 EGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG--SQKAKEDSATVLWNLCCH-----  518 (2102)
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC-----
Confidence            9999999999999999999999999999999999999999999999999999986  678999999999999952     


Q ss_pred             CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH-----------HHHHH
Q 015496          296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR-----------QQLQE  364 (405)
Q Consensus       296 ~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~-----------~~~~~  364 (405)
                      ++..+..+.+.|+++.|+++|++++..+++.|+++|.+|+..++..  .+      .+.+..|.           ..+..
T Consensus       519 ~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~--~I------~~Lv~LLlsdd~~~~~~aL~vLgn  590 (2102)
T PLN03200        519 SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA--TI------SQLTALLLGDLPESKVHVLDVLGH  590 (2102)
T ss_pred             cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh--HH------HHHHHHhcCCChhHHHHHHHHHHH
Confidence            3334445557899999999999999999999999999998765431  11      11111111           11111


Q ss_pred             hhh----chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          365 VML----EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       365 l~~----~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                      +++    .+.|++.+.+.+.++..++++.+++ +.++|++||+
T Consensus       591 Ilsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs-~~ikk~Aa~i  632 (2102)
T PLN03200        591 VLSVASLEDLVREGSAANDALRTLIQLLSSSK-EETQEKAASV  632 (2102)
T ss_pred             HHhhcchhHHHHHhhhccccHHHHHHHHcCCC-HHHHHHHHHH
Confidence            222    3446666667799999999999999 9999999996

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.84  E-value=5.5e-19  Score=204.57  Aligned_cols=245  Identities=11%  Similarity=0.064  Sum_probs=203.6

Q ss_pred             CHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496          146 SLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  224 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L  224 (405)
                      +.|.+..+...|.+++.+ .++...+.+.||+|+|+++|.++++.+|..|+|+|++++.+|++++..++++|+||+|+++
T Consensus       417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L  496 (2102)
T PLN03200        417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL  496 (2102)
T ss_pred             CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence            468899999999999955 6778899999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh-----------c
Q 015496          225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL-----------E  293 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~-----------~  293 (405)
                      |++++..+++.|+|||+|++.+.+..+..+.++|++++|+++|+++  +.+.|..|+|+|.+|+.+..           .
T Consensus       497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl  574 (2102)
T PLN03200        497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTADAATISQLTALLL  574 (2102)
T ss_pred             HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence            9999999999999999999998766677777899999999999986  67899999999999974310           0


Q ss_pred             cCCCC---------------------cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCch
Q 015496          294 NMHKV---------------------EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD  352 (405)
Q Consensus       294 ~~~~~---------------------~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~  352 (405)
                      ..++.                     ........|.++.|+++|.+++..+++.|+++|.++..+..+.++.+...+|++
T Consensus       575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIp  654 (2102)
T PLN03200        575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIIN  654 (2102)
T ss_pred             CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence            00000                     001112468999999999999999999999999999998888777777789999


Q ss_pred             HHHHHHHHHH----HH-------hhh--chhhhhhHHHHHHHHHHHHHHHhhh
Q 015496          353 TALERLRQQL----QE-------VML--EEDQRDYAMDVEALRREVELIFFRK  392 (405)
Q Consensus       353 ~~L~~L~~~~----~~-------l~~--~~~q~~~~~d~~~l~~e~~~~~~~k  392 (405)
                      |.+..|...-    ++       +..  +++|+.++...++++-..+++..+.
T Consensus       655 PLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d  707 (2102)
T PLN03200        655 PCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSS  707 (2102)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCC
Confidence            9999888332    11       221  4667788888888888888886553

>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity

Probab=99.75  E-value=1.3e-18  Score=142.32  Aligned_cols=89  Identities=34%  Similarity=0.533  Sum_probs=70.8

Q ss_pred             CChHHHHHHHhhcCCCccccchhhccCCCCHHHHHHhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 015496           77 SSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQ  155 (405)
Q Consensus        77 ~~l~~LLkwsi~~s~~~~~~~~~~~~~~~s~e~l~~r~~~L~~a~~~~-~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~  155 (405)
                      ++|+|||||||+||+.+...... ...++.+    +|+++..++|+.+ ++|+|+++||+++++|.+++.+.|+|+.||+
T Consensus         3 ~~l~~LLkWsI~ns~~~~~~~~~-~~~~~~~----~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald   77 (92)
T PF08609_consen    3 PNLNGLLKWSIENSTTSASDAPP-SAEQPDE----ERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALD   77 (92)
T ss_pred             HHHHHHHHHHHHcCCCCcccccc-CcCCchh----hhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence            57999999999999544422211 1122222    2667777777665 5999999999999999999999999999999


Q ss_pred             HHHHccCCCCchhHH
Q 015496          156 ELLILVEPIDNANDL  170 (405)
Q Consensus       156 ~L~~Lve~iDnA~~~  170 (405)
                      +|++|||+|||||++
T Consensus        78 ~le~LVE~IDNANnl   92 (92)
T PF08609_consen   78 NLEELVENIDNANNL   92 (92)
T ss_pred             HHHHHHHcccccccC
Confidence            999999999999985

Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=1.2e-15  Score=149.93  Aligned_cols=226  Identities=17%  Similarity=0.218  Sum_probs=183.7

Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC--cHHHHHHhh
Q 015496          148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMV  225 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G--~lp~Ll~LL  225 (405)
                      ..+-.++..|..+.+..+|.+.++..||+|.|+.+|++.++++|..++.+|++++-. ...++...+.+  .+|.|++|.
T Consensus       182 rvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm  260 (550)
T KOG4224|consen  182 RVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM  260 (550)
T ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH
Confidence            455678999999999999999999999999999999999999999999999999964 66788888888  999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                      +++++.++-.|-.||.++..+ ...+..++++|++|.++++|+++  ..++....+++|.|+..+      |-.-..+.+
T Consensus       261 d~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisih------plNe~lI~d  331 (550)
T KOG4224|consen  261 DDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSP--MGPLILASVACIRNISIH------PLNEVLIAD  331 (550)
T ss_pred             hCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhcccc------cCcccceec
Confidence            999999999999999999765 45577788999999999999987  455677889999999854      333446789


Q ss_pred             CCcHHHHHHhccCCCh-HHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHH---HH-------hhh-chhhhh
Q 015496          306 RFFLKSVVDLTASADL-DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL---QE-------VML-EEDQRD  373 (405)
Q Consensus       306 ~g~l~~Lv~LL~~~D~-~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~---~~-------l~~-~~~q~~  373 (405)
                      .||++.||.+|..+|. ++|-+|..+|.+|+..++..+.++...+.++...+.+++..   ++       ... +|..|+
T Consensus       332 agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~  411 (550)
T KOG4224|consen  332 AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKE  411 (550)
T ss_pred             ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHH
Confidence            9999999999998755 49999999999999877777888884555555555555322   22       111 566677


Q ss_pred             hHHHHHHHHH
Q 015496          374 YAMDVEALRR  383 (405)
Q Consensus       374 ~~~d~~~l~~  383 (405)
                      |..|.+-++-
T Consensus       412 ~lld~gi~~i  421 (550)
T KOG4224|consen  412 ALLDSGIIPI  421 (550)
T ss_pred             HHhhcCCcce
Confidence            7766544443

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=6.1e-15  Score=145.00  Aligned_cols=203  Identities=15%  Similarity=0.149  Sum_probs=178.0

Q ss_pred             HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015496          147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK  226 (405)
Q Consensus       147 ~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~  226 (405)
                      ..-+..+-.++-++.-+.+|.--+++++|+.+|+.....+..++|+.|..||.+++.- ...+..+...|++.+|.+|-+
T Consensus        99 ~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLak  177 (550)
T KOG4224|consen   99 KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAK  177 (550)
T ss_pred             hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcc
Confidence            3445667778888888889999999999999999999999999999999999999986 667888889999999999888


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015496          227 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR  306 (405)
Q Consensus       227 s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~  306 (405)
                      +.+..++..+..||+|+. |..++++.++.+||+++|+.+++++  +..+|..++.+|++++.      +...+..+.+.
T Consensus       178 skdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~--d~dvqyycttaisnIaV------d~~~Rk~Laqa  248 (550)
T KOG4224|consen  178 SKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISNIAV------DRRARKILAQA  248 (550)
T ss_pred             cchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhhhhh------hHHHHHHHHhc
Confidence            888899999999999996 5678899999999999999999987  66689999999999984      45567778777


Q ss_pred             C--cHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH
Q 015496          307 F--FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  360 (405)
Q Consensus       307 g--~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~  360 (405)
                      +  +++.|+++...+++.++-.|..||.+|+++.+.++..++ .++++..++.|+.
T Consensus       249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs  303 (550)
T KOG4224|consen  249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQS  303 (550)
T ss_pred             ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhC
Confidence            6  999999999999999999999999999998776777776 7788777777763

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.58  E-value=5.3e-14  Score=117.39  Aligned_cols=118  Identities=25%  Similarity=0.381  Sum_probs=111.6

Q ss_pred             HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015496          169 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL  248 (405)
Q Consensus       169 ~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~  248 (405)
                      .+++.|+++.++++|.++++.+|..|+++|++++.++|.....+++.|++|.|++++.++++.++..|+|+|++++.+.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            46789999999999999999999999999999999999999999999999999999999889999999999999999988


Q ss_pred             hhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496          249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       249 ~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~  288 (405)
                      .....+.+.|+++.|.++++++  +.++++.++|++.+|+
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence            8888899999999999999986  6789999999999997

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.42  E-value=3.7e-12  Score=106.17  Aligned_cols=118  Identities=21%  Similarity=0.229  Sum_probs=107.5

Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      .+++.|+++.|++++.+++..++..++++|++++.+++.....+++.|+++.|..+|.++  +.+++..+++++++|+..
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~   79 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAG   79 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccC
Confidence            367899999999999998889999999999999999999999999999999999999986  678999999999999963


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                           .+.....+.+.|+++.+++++..++.++++.++++|.+|+
T Consensus        80 -----~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          80 -----PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             -----cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence                 3455667788999999999999999999999999999986

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=1.2e-09  Score=108.25  Aligned_cols=188  Identities=18%  Similarity=0.160  Sum_probs=147.9

Q ss_pred             HHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHH
Q 015496          155 QELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV  234 (405)
Q Consensus       155 ~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~  234 (405)
                      +...+.++..+..-++..+  ++..+--..+.+.+=+..|..-|-..+.+ -+....++..|++.+++..+.+++.++|+
T Consensus        66 e~~k~~~~~~~~~~~~~~~--~~~~~~~~~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR~  142 (342)
T KOG2160|consen   66 EDQKDFVEDMKVISDVMSM--IPIVILNSSSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELRE  142 (342)
T ss_pred             hhhhhhcccchhHHHHHHh--hhhhccCcccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHHH
Confidence            3344566666666666666  22222222356778888999999999875 55677789999999999999999999999


Q ss_pred             HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496          235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD  314 (405)
Q Consensus       235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~  314 (405)
                      .|+|.|+.+++|||..|..+++.||++.|+.++.++ .+...+.||.+++++|.++     ++.....|...+....|.+
T Consensus       143 ~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn-----~~~g~~~fl~~~G~~~L~~  216 (342)
T KOG2160|consen  143 LAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD-DPNTVRTKALFAISSLIRN-----NKPGQDEFLKLNGYQVLRD  216 (342)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC-CCchHHHHHHHHHHHHHhc-----CcHHHHHHHhcCCHHHHHH
Confidence            999999999999999999999999999999999966 4677899999999999985     3444555666666889999


Q ss_pred             hccC--CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCch
Q 015496          315 LTAS--ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD  352 (405)
Q Consensus       315 LL~~--~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~  352 (405)
                      .|.+  .+..++.+++..+..|++........+. .-|+.
T Consensus       217 vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~-~~~f~  255 (342)
T KOG2160|consen  217 VLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS-SLGFQ  255 (342)
T ss_pred             HHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH-Hhhhh
Confidence            9998  5788999999999999986544444333 44443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.26  E-value=2.8e-10  Score=123.25  Aligned_cols=194  Identities=18%  Similarity=0.168  Sum_probs=163.2

Q ss_pred             HHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHH
Q 015496          152 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE  231 (405)
Q Consensus       152 ~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~  231 (405)
                      .++--|.++.++..+-..+.+.|++++|+++|++++.++...+..+|..++-. ++++..+.+.|++|+|++++.+++..
T Consensus       268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~  346 (708)
T PF05804_consen  268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENED  346 (708)
T ss_pred             HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence            45667889999999999999999999999999999999999999999999975 66899999999999999999999988


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHH
Q 015496          232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS  311 (405)
Q Consensus       232 v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~  311 (405)
                      +...++..|.|+.- ++..+..+++.|.++.|+.+|.++  +  .+.-+..++++|+.      +++.+..|...++++.
T Consensus       347 l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~--~~~val~iLy~LS~------dd~~r~~f~~TdcIp~  415 (708)
T PF05804_consen  347 LVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--N--FREVALKILYNLSM------DDEARSMFAYTDCIPQ  415 (708)
T ss_pred             HHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--c--hHHHHHHHHHHhcc------CHhhHHHHhhcchHHH
Confidence            89999999999965 567899999999999999999875  2  45678999999984      5567788888899999


Q ss_pred             HHHhccC-CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496          312 VVDLTAS-ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL  358 (405)
Q Consensus       312 Lv~LL~~-~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L  358 (405)
                      ++++|.. ++..+...++.++.+|+.... +.+.+.+.+|+...+.+.
T Consensus       416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra  462 (708)
T PF05804_consen  416 LMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRA  462 (708)
T ss_pred             HHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHH
Confidence            9998655 566676667778888998755 446666466665555443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.21  E-value=2.2e-09  Score=113.31  Aligned_cols=210  Identities=17%  Similarity=0.165  Sum_probs=172.2

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496          136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL  215 (405)
Q Consensus       136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~  215 (405)
                      .+..|.+.  +.|+-..+.+.|..+.+..+-...  ..+..+.|...|.|+++.||..+++.|+++++++....+.+.+.
T Consensus        43 lf~~L~~~--~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~  118 (503)
T PF10508_consen   43 LFDCLNTS--NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN  118 (503)
T ss_pred             HHHHHhhc--ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence            44455544  456666777788888777654443  34557888899999999999999999999999999888889999


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496          216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  295 (405)
Q Consensus       216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~  295 (405)
                      +.++.++.++.+++.++...|+-+|++++++ +...+.++..+++..|..++..+  +..+|.++..++.+++.     .
T Consensus       119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~i~~-----~  190 (503)
T PF10508_consen  119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVEIAS-----H  190 (503)
T ss_pred             cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHHHHh-----c
Confidence            9999999999999999999999999999975 55667788889999999999874  33467889999999985     4


Q ss_pred             CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496          296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR  359 (405)
Q Consensus       296 ~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~  359 (405)
                      +++....+.+.|+++.++..|.++|+-+|..++..|..|+.. +...+.+. ..|+.+.|..+.
T Consensus       191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~-~~g~~yL~-~~gi~~~L~~~l  252 (503)
T PF10508_consen  191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET-PHGLQYLE-QQGIFDKLSNLL  252 (503)
T ss_pred             CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC-hhHHHHHH-hCCHHHHHHHHH
Confidence            667778888899999999999999999999999999999984 44555555 677766666654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.20  E-value=6.4e-10  Score=107.39  Aligned_cols=175  Identities=17%  Similarity=0.176  Sum_probs=135.8

Q ss_pred             HhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015496          171 SKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA  249 (405)
Q Consensus       171 ~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~  249 (405)
                      ...+.++.|+.+|+ +.+|.++..|..++++.+. .|..|+.+.+.|+++.+..++.++++.++.+|++||.|+..+ .+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence            45567899999997 5789999999999999875 699999999999999999999999999999999999999765 44


Q ss_pred             hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHH
Q 015496          250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA  329 (405)
Q Consensus       250 ~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~  329 (405)
                      .+..+-. -+-.++...+..+ .+..+|..++.+|.+|+.      .++....+.  +.++.++.+|.+++..++.+++.
T Consensus        87 n~~~Ik~-~i~~Vc~~~~s~~-lns~~Q~agLrlL~nLtv------~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk  156 (254)
T PF04826_consen   87 NQEQIKM-YIPQVCEETVSSP-LNSEVQLAGLRLLTNLTV------TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLK  156 (254)
T ss_pred             hHHHHHH-HHHHHHHHHhcCC-CCCHHHHHHHHHHHccCC------CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHH
Confidence            4444432 2334444444443 456789999999999974      233344443  47999999999999999999999


Q ss_pred             HHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496          330 AIKNLLQLRTTEALVLKDFCGLDTALERL  358 (405)
Q Consensus       330 aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L  358 (405)
                      +|.+|+..+...+..+. ..++...+..+
T Consensus       157 ~L~nLS~np~~~~~Ll~-~q~~~~~~~Lf  184 (254)
T PF04826_consen  157 VLVNLSENPDMTRELLS-AQVLSSFLSLF  184 (254)
T ss_pred             HHHHhccCHHHHHHHHh-ccchhHHHHHH
Confidence            99999998765666665 55544444333

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=7.3e-08  Score=94.81  Aligned_cols=230  Identities=17%  Similarity=0.088  Sum_probs=174.5

Q ss_pred             CCC--HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHH
Q 015496          126 TPS--DAQLIQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKA  201 (405)
Q Consensus       126 ~~~--d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~  201 (405)
                      .|+  |++-|.-.++.|.....+.|--...+.-+..-+ -+.-|..+|++.|.++.+.+-|+ ++...+-..++|++.-+
T Consensus       138 qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l  217 (461)
T KOG4199|consen  138 QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRAL  217 (461)
T ss_pred             CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence            465  677888888888877655555555666666533 44568999999999999997665 44445667889999888


Q ss_pred             hcCCh---------HhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCC
Q 015496          202 SQNNP---------LVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS  271 (405)
Q Consensus       202 aqNN~---------~~Q~~vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~  271 (405)
                      ....+         ...+.|.+.|++..|++.+... ++.+-..+..+|+.++-+ .+..+.+.+.||+..|+.++.+.+
T Consensus       218 ~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n  296 (461)
T KOG4199|consen  218 LTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSN  296 (461)
T ss_pred             cCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhc
Confidence            75432         2455677888999999999764 356677788888888654 466777889999999999998753


Q ss_pred             c-cHH-HHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc--CCChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496          272 F-EIR-LHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--SADLDLQEKALAAIKNLLQLRTTEALVLKD  347 (405)
Q Consensus       272 ~-~~k-l~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~--~~D~~v~E~al~aL~~L~~~~~~~~~~v~~  347 (405)
                      . ..| +-+.++.+|+.|+      .+.+.++.+++.|..+.++.++.  ++|+.+.+.++.+++.|+--.+++...+.+
T Consensus       297 ~~~~r~l~k~~lslLralA------G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie  370 (461)
T KOG4199|consen  297 EQGNRTLAKTCLSLLRALA------GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE  370 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHh------CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh
Confidence            1 223 4567888999988      46688899999999999999864  468999999999999988777777777774


Q ss_pred             cCCchHHHHHHHHHH
Q 015496          348 FCGLDTALERLRQQL  362 (405)
Q Consensus       348 ~~Gl~~~L~~L~~~~  362 (405)
                      .++..-.+..|+.|+
T Consensus       371 ~G~a~~avqAmkahP  385 (461)
T KOG4199|consen  371 AGAADLAVQAMKAHP  385 (461)
T ss_pred             cchHHHHHHHHHhCc
Confidence            666677788888665

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.00  E-value=4.6e-08  Score=94.55  Aligned_cols=193  Identities=19%  Similarity=0.137  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ  209 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q  209 (405)
                      ++-++..+..|.... ++.-+..++-.+.......-+-+-+.+.||++.+..+|+++++.+|..|.++|.|++.+ .+.|
T Consensus        11 ~~~l~~Ll~lL~~t~-dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~   88 (254)
T PF04826_consen   11 AQELQKLLCLLESTE-DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQ   88 (254)
T ss_pred             HHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhH
Confidence            344556666666543 55667777777777766666777888899999999999999999999999999999875 6677


Q ss_pred             HHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015496          210 KQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL  287 (405)
Q Consensus       210 ~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L  287 (405)
                      ..+-.  .++.+++...+.  +.+++..++.+|.++.-.+ ..+..+.  +.++.+..+|.++  +.++|..++.+|.||
T Consensus        89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G--~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSG--SEKTKVQVLKVLVNL  161 (254)
T ss_pred             HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcC--ChHHHHHHHHHHHHh
Confidence            76543  588888866554  3578889999999997553 3344443  5789999999987  567899999999999


Q ss_pred             hhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcC
Q 015496          288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       288 ~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~  337 (405)
                      +.      ++.....+...+++..++.++... +.++...++..+.+|..+
T Consensus       162 S~------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  162 SE------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cc------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            84      567777888889999999999886 788888999999999654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.00  E-value=6.2e-08  Score=105.25  Aligned_cols=202  Identities=20%  Similarity=0.177  Sum_probs=150.6

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      +.+-...++.-|..|.-..+|.+.+.+.|.+++|++++.+++.+++..|.++|.|++.+ +..+..+++.|.+|+|+.+|
T Consensus       303 n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL  381 (708)
T PF05804_consen  303 NEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELL  381 (708)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHh
Confidence            45677778888888888889999999999999999999999999999999999999975 77899999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                      .+++  .+.-++..|.++.. .+.++..|...+.++.|++++-+. .+.++...++.++.||+.++      ...+.+.+
T Consensus       382 ~d~~--~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~Ll~~-~~~~v~~eliaL~iNLa~~~------rnaqlm~~  451 (708)
T PF05804_consen  382 KDPN--FREVALKILYNLSM-DDEARSMFAYTDCIPQLMQMLLEN-SEEEVQLELIALLINLALNK------RNAQLMCE  451 (708)
T ss_pred             CCCc--hHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHHHHhC-CCccccHHHHHHHHHHhcCH------HHHHHHHh
Confidence            8754  33345555556555 456788998889999999987654 24556777889999987542      11112222


Q ss_pred             C-------------------------------------CcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496          306 R-------------------------------------FFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTTEALVLKD  347 (405)
Q Consensus       306 ~-------------------------------------g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~~~~~~~~v~~  347 (405)
                      .                                     +++..|+.++..+ +.++.-.++.+|.+|...+.+..+.+. 
T Consensus       452 g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~-  530 (708)
T PF05804_consen  452 GNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQ-  530 (708)
T ss_pred             cCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHH-
Confidence            2                                     2444555555543 667777788888888755444555665 


Q ss_pred             cCCchHHHHHHH
Q 015496          348 FCGLDTALERLR  359 (405)
Q Consensus       348 ~~Gl~~~L~~L~  359 (405)
                      ..++.|.+..+.
T Consensus       531 ~~~llp~L~~~L  542 (708)
T PF05804_consen  531 EYNLLPWLKDLL  542 (708)
T ss_pred             hCCHHHHHHHHh
Confidence            777766666555

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=8e-08  Score=94.55  Aligned_cols=212  Identities=14%  Similarity=0.116  Sum_probs=167.6

Q ss_pred             HhhcCCCCHHHHHHHHHHHHHccCCC----------CchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChH
Q 015496          139 DLNNSTLSLEDSQRALQELLILVEPI----------DNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL  207 (405)
Q Consensus       139 ~L~~~~~t~e~k~~AL~~L~~Lve~i----------DnA~~~~~~Ggi~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aqNN~~  207 (405)
                      +|+..+.+ +.-..+.+.+..|+-+-          ..|+.|.+.||+..|+..|.. -+|++-..++-+|+.++-+|+.
T Consensus       197 ~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~  275 (461)
T KOG4199|consen  197 VLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEI  275 (461)
T ss_pred             HHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHH
Confidence            44555544 33345566777766443          458999999999999999974 5799999999999999998877


Q ss_pred             hHHHHHHcCcHHHHHHhhcCCC-HHHH---HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496          208 VQKQVLELGALSKLMKMVKSSF-VEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL  283 (405)
Q Consensus       208 ~Q~~vle~G~lp~Ll~LL~s~~-~~v~---~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~l  283 (405)
                      +|. |.+.||+..|++++.+.+ ...|   +.++.-|+.+++ +....+.+++.||.+.|+.++-...+++.+-..++.+
T Consensus       276 C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~  353 (461)
T KOG4199|consen  276 CKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI  353 (461)
T ss_pred             HHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence            665 789999999999998855 3444   567777887764 5678899999999999999987655678889999999


Q ss_pred             HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-C-ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496          284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-A-DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR  359 (405)
Q Consensus       284 Ls~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~-~-D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~  359 (405)
                      ++-||-.     .|+....+++.|.-...++-++. + ...+|..+++++.+++..+.+++..+. +.|+..++..=+
T Consensus       354 i~~l~LR-----~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~  425 (461)
T KOG4199|consen  354 ISILCLR-----SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAK  425 (461)
T ss_pred             HHHHHhc-----CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHH
Confidence            9999953     46677788899988888888764 3 678999999999999998888888887 788866554444

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=98.95  E-value=1.1e-07  Score=100.44  Aligned_cols=194  Identities=18%  Similarity=0.152  Sum_probs=158.2

Q ss_pred             HHHHHHHHHcCCCC-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHH
Q 015496          115 MEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRK  192 (405)
Q Consensus       115 ~~L~~a~~~~~~~~-d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A~~~~~~Ggi~~Lv~lL~s~~~~Ir~  192 (405)
                      +-|+..++.+...+ ..+.+.....-|.++  ++..|..++..+..+++..+. +.-+.+.+.++.++.+|.+++.++..
T Consensus        60 ~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~  137 (503)
T PF10508_consen   60 DILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAK  137 (503)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHH
Confidence            44555555433222 234444455555654  467888889999998877765 44566678899999999999999999


Q ss_pred             HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCc
Q 015496          193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF  272 (405)
Q Consensus       193 ~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~  272 (405)
                      .|+.+|..++.+.+ ..+.+++.+.++.|..++..+++.+|.+++..+..+.+.++...+...+.|.++.++..|+++  
T Consensus       138 ~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d--  214 (503)
T PF10508_consen  138 AAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD--  214 (503)
T ss_pred             HHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc--
Confidence            99999999998655 445688888999999999887888899999999999999999999999999999999999985  


Q ss_pred             cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC
Q 015496          273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA  319 (405)
Q Consensus       273 ~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~  319 (405)
                      |+-+|..++-+++.|+.      .+.....+.+.|+++.|++++...
T Consensus       215 DiLvqlnalell~~La~------~~~g~~yL~~~gi~~~L~~~l~~~  255 (503)
T PF10508_consen  215 DILVQLNALELLSELAE------TPHGLQYLEQQGIFDKLSNLLQDS  255 (503)
T ss_pred             cHHHHHHHHHHHHHHHc------ChhHHHHHHhCCHHHHHHHHHhcc
Confidence            88899999999999995      345577889999999999999765

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.89  E-value=7.7e-08  Score=95.54  Aligned_cols=206  Identities=21%  Similarity=0.263  Sum_probs=150.8

Q ss_pred             CHHHHHHHHHHHHHccCC-CCchhHHHhcC------CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcH
Q 015496          146 SLEDSQRALQELLILVEP-IDNANDLSKLG------GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL  218 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~-iDnA~~~~~~G------gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~l  218 (405)
                      ..+-..-.+--+.+++.+ .....-|....      -+.++++++++++.-++..|+.+++.++...+....... .+.+
T Consensus        70 ~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l  148 (312)
T PF03224_consen   70 NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEAL  148 (312)
T ss_dssp             -HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHH
Confidence            445555666667776644 45666666632      589999999999999999999999999987665555433 5678


Q ss_pred             HHHHHhhcCCC----HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh-----cCCCccHHHHHHHHHHHHHHhh
Q 015496          219 SKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-----GNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       219 p~Ll~LL~s~~----~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL-----~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      +.+++.+++..    .+++.-++.+|++++| .+..+..|.+.||++.|..++     .+++....++-.+++++--|..
T Consensus       149 ~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF  227 (312)
T PF03224_consen  149 PKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF  227 (312)
T ss_dssp             HHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc
Confidence            99998887632    3456889999999997 578899999999999999999     3334577888999999998875


Q ss_pred             chhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCChh-hHHHHHhcCCchHHHHHHHH
Q 015496          290 CQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTT-EALVLKDFCGLDTALERLRQ  360 (405)
Q Consensus       290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~~~~-~~~~v~~~~Gl~~~L~~L~~  360 (405)
                            +++..+.+.+.++++.|+++++.. ...+..-++.++.||+..+.+ +...+. .+|+.+.+..|..
T Consensus       228 ------~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv-~~~~l~~l~~L~~  293 (312)
T PF03224_consen  228 ------EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMV-LCGLLKTLQNLSE  293 (312)
T ss_dssp             ------SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHH-HH-HHHHHHHHHS
T ss_pred             ------CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHH-HccHHHHHHHHhc
Confidence                  456677788889999999999764 678888999999999987664 455555 6888888888763

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=8.4e-08  Score=103.11  Aligned_cols=208  Identities=15%  Similarity=0.151  Sum_probs=161.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC--CCCchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhc
Q 015496          127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE--PIDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQ  203 (405)
Q Consensus       127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve--~iDnA~~~~~~Ggi~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aq  203 (405)
                      .+.--.||+++.-+.+.+ ++-.++.|+-+|.+++-  +.|.-.-|--.-.+|.|+.+|++ .+.+|.-.||++|++++-
T Consensus       163 ~sasSk~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e  241 (1051)
T KOG0168|consen  163 SSASSKAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE  241 (1051)
T ss_pred             ccchHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence            344568999999998875 66677777666665432  11211122222357889999986 579999999999999999


Q ss_pred             CChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015496          204 NNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  282 (405)
Q Consensus       204 NN~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~  282 (405)
                      --|..-..++++++||.|+.-|.. .-..+.++++.||=-|-|.++.   +.+++||+...+.+|.=-  ..-.||+|+.
T Consensus       242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFF--Si~aQR~Ala  316 (1051)
T KOG0168|consen  242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFF--SIHAQRVALA  316 (1051)
T ss_pred             hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHH--HHHHHHHHHH
Confidence            999999999999999999965544 5578999999999999998876   578899999988887632  3557999999


Q ss_pred             HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK  346 (405)
Q Consensus       283 lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~  346 (405)
                      ...|.|.+    ..++....+.+  .+|.|..+|...|..+.|.++.++..++..-....+.+.
T Consensus       317 iaaN~Cks----i~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLd  374 (1051)
T KOG0168|consen  317 IAANCCKS----IRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLD  374 (1051)
T ss_pred             HHHHHHhc----CCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHH
Confidence            99999974    45555556654  899999999999999999999999999865433334443

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.81  E-value=6.2e-08  Score=101.92  Aligned_cols=177  Identities=14%  Similarity=0.103  Sum_probs=137.5

Q ss_pred             CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015496          164 IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL  243 (405)
Q Consensus       164 iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~l  243 (405)
                      ++++..+-..-....+.......+...+..|+-++-+++..-...+.-+-...+..+|++++..++..+...++.||+|+
T Consensus       367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~Nl  446 (678)
T KOG1293|consen  367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNL  446 (678)
T ss_pred             hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence            66776666543333333444567888998999888888765443333333446889999999888888999999999999


Q ss_pred             hcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHH
Q 015496          244 IRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDL  323 (405)
Q Consensus       244 ir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v  323 (405)
                      +=.+.+-+..|+..||++.|...+.+.  +..+|.++.|+++++..+    .++..+..+...-.-+.++.+.+.+|..|
T Consensus       447 Vmefs~~kskfl~~ngId~l~s~~~~~--~~n~r~~~~~~Lr~l~f~----~de~~k~~~~~ki~a~~i~~l~nd~d~~V  520 (678)
T KOG1293|consen  447 VMEFSNLKSKFLRNNGIDILESMLTDP--DFNSRANSLWVLRHLMFN----CDEEEKFQLLAKIPANLILDLINDPDWAV  520 (678)
T ss_pred             HhhcccHHHHHHHcCcHHHHHHHhcCC--CchHHHHHHHHHHHHHhc----chHHHHHHHHHHhhHHHHHHHHhCCCHHH
Confidence            999999999999999999999999986  677899999999999874    44444444444455666788888999999


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHH
Q 015496          324 QEKALAAIKNLLQLRTTEALVLK  346 (405)
Q Consensus       324 ~E~al~aL~~L~~~~~~~~~~v~  346 (405)
                      ||.++..|.+|+.+..+..+.+-
T Consensus       521 qeq~fqllRNl~c~~~~svdfll  543 (678)
T KOG1293|consen  521 QEQCFQLLRNLTCNSRKSVDFLL  543 (678)
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHH
Confidence            99999999999988655555443

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=98.68  E-value=2e-07  Score=100.06  Aligned_cols=174  Identities=16%  Similarity=0.148  Sum_probs=139.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--hHHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQEM  253 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~--~~~~  253 (405)
                      +|..+.+|.+.++.+|..|+.-+-.++-.+.+++..+.+.|+|+.|+.+|.+...+++..|++||-|++-+...  ..-+
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla  314 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA  314 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence            67788999999999999999999999999999999999999999999999999999999999999999988666  7777


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc--------------CC
Q 015496          254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------------SA  319 (405)
Q Consensus       254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~--------------~~  319 (405)
                      +.++||++.|+.+|+.. .|..++..+..++-||.++      ...+..++. ..+..|.+-+-              ..
T Consensus       315 i~~~~Gv~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~------D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~  386 (717)
T KOG1048|consen  315 IKELNGVPTLVRLLRHT-QDDEVRELITGILWNLSSN------DALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAE  386 (717)
T ss_pred             hhhcCChHHHHHHHHhh-cchHHHHHHHHHHhcccch------hHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccc
Confidence            88999999999999964 2566899999999999752      222222222 22333332211              11


Q ss_pred             ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHH
Q 015496          320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALER  357 (405)
Q Consensus       320 D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~  357 (405)
                      +.++--.+..+|.++++.+.+.|+.++...|+-..|.-
T Consensus       387 ~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~  424 (717)
T KOG1048|consen  387 DSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLF  424 (717)
T ss_pred             cceeeehhhhhhccccchhHHHHHHHhhccchHHHHHH
Confidence            35677789999999999888899999977776444333

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.48  E-value=5.9e-05  Score=77.97  Aligned_cols=221  Identities=15%  Similarity=0.109  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhc-----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQ  203 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~~~~~-----Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq  203 (405)
                      ....+-.+..+.+.+ ..+-..-.|--+.+++.. ...+.-|++.     .-+.+++.+|++++.-|...|+.+|+.+++
T Consensus        52 ~~y~~~~l~ll~~~~-~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~  130 (429)
T cd00256          52 GQYVKTFVNLLSQID-KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC  130 (429)
T ss_pred             HHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence            455555666665533 344444455555555544 3345667664     468899999999999999999999999987


Q ss_pred             CChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015496          204 NNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  282 (405)
Q Consensus       204 NN~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~  282 (405)
                      -.+.........-.+.-|...+++.+ ...+.-++.+++.++|. +..+..|.+.+|++.|..+|+....+..++-.+++
T Consensus       131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll  209 (429)
T cd00256         131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF  209 (429)
T ss_pred             cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence            54432221111113345556666543 45566788999999986 56788999999999999999875335678888888


Q ss_pred             HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCh------hhHHHHHhcCCchHHH
Q 015496          283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDTAL  355 (405)
Q Consensus       283 lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~~~------~~~~~v~~~~Gl~~~L  355 (405)
                      ++--|..+      ++..+.+.+.++++.++++++.. -..+...++.++.||+..+.      .....+. .+|+++.+
T Consensus       210 ~lWlLSF~------~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv-~~~l~~~l  282 (429)
T cd00256         210 CIWLLTFN------PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMV-QCKVLKTL  282 (429)
T ss_pred             HHHHHhcc------HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHH-HcChHHHH
Confidence            88877753      23444566679999999999865 56677788889999997431      2333444 67888887


Q ss_pred             HHHH
Q 015496          356 ERLR  359 (405)
Q Consensus       356 ~~L~  359 (405)
                      ..|.
T Consensus       283 ~~L~  286 (429)
T cd00256         283 QSLE  286 (429)
T ss_pred             HHHh
Confidence            7776

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK09687 putative lyase; Provisional

Probab=98.34  E-value=3e-05  Score=76.17  Aligned_cols=150  Identities=11%  Similarity=0.071  Sum_probs=82.1

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  224 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~l-L~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L  224 (405)
                      ++..|..|...|.++-..-. .    ....++.|..+ ++.+++.||..|+.+||.+....+.-..     .+++.+...
T Consensus        67 d~~vR~~A~~aLg~lg~~~~-~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~-----~a~~~l~~~  136 (280)
T PRK09687         67 NPIERDIGADILSQLGMAKR-C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSP-----KIVEQSQIT  136 (280)
T ss_pred             CHHHHHHHHHHHHhcCCCcc-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccch-----HHHHHHHHH
Confidence            56778888888887633211 0    11245666666 5678888898999888887543221111     133445555


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496          225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  304 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~  304 (405)
                      +.+++..||..|++||+.+ + ++         ..++.|+.+|+++  +..+|..|++.|..+...     +        
T Consensus       137 ~~D~~~~VR~~a~~aLg~~-~-~~---------~ai~~L~~~L~d~--~~~VR~~A~~aLg~~~~~-----~--------  190 (280)
T PRK09687        137 AFDKSTNVRFAVAFALSVI-N-DE---------AAIPLLINLLKDP--NGDVRNWAAFALNSNKYD-----N--------  190 (280)
T ss_pred             hhCCCHHHHHHHHHHHhcc-C-CH---------HHHHHHHHHhcCC--CHHHHHHHHHHHhcCCCC-----C--------
Confidence            5555566666666666544 1 11         1455666666654  334666666666655210     1        


Q ss_pred             hCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496          305 DRFFLKSVVDLTASADLDLQEKALAAIK  332 (405)
Q Consensus       305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~  332 (405)
                       ...++.|+.+|...|.+++..|.++|+
T Consensus       191 -~~~~~~L~~~L~D~~~~VR~~A~~aLg  217 (280)
T PRK09687        191 -PDIREAFVAMLQDKNEEIRIEAIIGLA  217 (280)
T ss_pred             -HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence             123444555555555555555555554

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.33  E-value=1.2e-06  Score=60.63  Aligned_cols=41  Identities=22%  Similarity=0.382  Sum_probs=38.7

Q ss_pred             ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 015496          205 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR  245 (405)
Q Consensus       205 N~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir  245 (405)
                      ||+.++.+++.|++|+|+++|++++..++..|+|||+||++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            57889999999999999999999999999999999999975

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=4.9e-05  Score=81.89  Aligned_cols=223  Identities=21%  Similarity=0.210  Sum_probs=168.8

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC------c-----------hhHHHhc-CCHHHHHHhcCCCCHHHHH
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------N-----------ANDLSKL-GGLSVLVGQLNHPDTDIRK  192 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD------n-----------A~~~~~~-Ggi~~Lv~lL~s~~~~Ir~  192 (405)
                      .-|+-.+.+|.+.-.++|-...+|+.+..++..-|      +           |..|++. +-|..|+.++...+-.||.
T Consensus        61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~  140 (970)
T KOG0946|consen   61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL  140 (970)
T ss_pred             cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence            34777888887776677777778888887775442      2           4556665 5577888999999999999


Q ss_pred             HHHHHHHHHhcC-ChHhHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496          193 ISAWILGKASQN-NPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS  270 (405)
Q Consensus       193 ~Aa~~Lg~~aqN-N~~~Q~~vle~-G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~  270 (405)
                      .|...|.++..+ -+++|++++.. -+|..|+.+|.+..+.+|-.+++-|+.++|+++..++.+.=.|.+.-|..++...
T Consensus       141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE  220 (970)
T KOG0946|consen  141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE  220 (970)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence            999999998875 45788888876 6899999999998889999999999999999998888877789999999999643


Q ss_pred             C--ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC---C----------hHHHHHHHHHHHHHh
Q 015496          271 S--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D----------LDLQEKALAAIKNLL  335 (405)
Q Consensus       271 ~--~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~---D----------~~v~E~al~aL~~L~  335 (405)
                      .  +.--+-..++.++.||..+     +.+....|.+.+++++|.++|..+   |          +.-.-.++.++..|+
T Consensus       221 Gg~dGgIVveDCL~ll~NLLK~-----N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lV  295 (970)
T KOG0946|consen  221 GGLDGGIVVEDCLILLNNLLKN-----NISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLV  295 (970)
T ss_pred             CCCCCcchHHHHHHHHHHHHhh-----CcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhc
Confidence            2  1223678899999999963     567778999999999999998753   3          122345677777777


Q ss_pred             cCChh------hHHHHHhcCCchHHHHHHH
Q 015496          336 QLRTT------EALVLKDFCGLDTALERLR  359 (405)
Q Consensus       336 ~~~~~------~~~~v~~~~Gl~~~L~~L~  359 (405)
                      .-+..      +.+++. .+++...|-.+.
T Consensus       296 sP~Nt~~~~~q~qk~l~-ss~ll~~Lc~il  324 (970)
T KOG0946|consen  296 SPGNTSSITHQNQKALV-SSHLLDVLCTIL  324 (970)
T ss_pred             CCCCcHHHHHHHHHHHH-HcchHHHHHHHH
Confidence            64322      112333 566655554444

>PRK09687 putative lyase; Provisional

Probab=98.32  E-value=2.1e-05  Score=77.20  Aligned_cols=161  Identities=11%  Similarity=-0.005  Sum_probs=117.5

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV  212 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v  212 (405)
                      ++..++.|.+.  +...+..|...|..+=+          -..++.+..+++++++.+|..|+|+||.+.... ..+   
T Consensus        25 ~~~L~~~L~d~--d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~~---   88 (280)
T PRK09687         25 DDELFRLLDDH--NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RCQ---   88 (280)
T ss_pred             HHHHHHHHhCC--CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cch---
Confidence            55566777665  45678888888875421          225778888899999999999999999985321 111   


Q ss_pred             HHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496          213 LELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ  291 (405)
Q Consensus       213 le~G~lp~Ll~L-L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~  291 (405)
                        ..+++.|..+ ++++++.||..|+.+||.+.........     ..++.+...+.++  +..+|..++++|..+-   
T Consensus        89 --~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~-----~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~---  156 (280)
T PRK09687         89 --DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSP-----KIVEQSQITAFDK--STNVRFAVAFALSVIN---  156 (280)
T ss_pred             --HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccch-----HHHHHHHHHhhCC--CHHHHHHHHHHHhccC---
Confidence              1356888877 5566788999999999998544321111     1345566777765  6779999999887653   


Q ss_pred             hccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496          292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL  334 (405)
Q Consensus       292 ~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L  334 (405)
                                   +...++.|+.+|..+|.+++..|+.+|+.+
T Consensus       157 -------------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~  186 (280)
T PRK09687        157 -------------DEAAIPLLINLLKDPNGDVRNWAAFALNSN  186 (280)
T ss_pred             -------------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence                         134788999999999999999999999987

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.28  E-value=8.8e-06  Score=82.61  Aligned_cols=190  Identities=15%  Similarity=0.093  Sum_probs=138.8

Q ss_pred             hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC----C---HHHHHHHHHHHHHHh
Q 015496          172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----F---VEEAVKALYTVSSLI  244 (405)
Q Consensus       172 ~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~----~---~~v~~kAl~ALS~li  244 (405)
                      ..|.+++|.+..+|++-++-.+.+++|||+|..|.+.+.+|.+.||-..+++.|++.    .   ++...-+..-|+|.+
T Consensus        85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~  164 (604)
T KOG4500|consen   85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI  164 (604)
T ss_pred             HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence            457788888888999999999999999999999999999999999988888877653    2   234556788899999


Q ss_pred             cCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHH
Q 015496          245 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDL  323 (405)
Q Consensus       245 r~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v  323 (405)
                      -++...+.++.+.|.++.|...+.-+-.+..+..+..-...+|++--    .+...+...+..+...++++|.+. .+++
T Consensus       165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~----~e~~~~~~~d~sl~~~l~~ll~~~v~~d~  240 (604)
T KOG4500|consen  165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV----CEMLYPFCKDCSLVFMLLQLLPSMVREDI  240 (604)
T ss_pred             CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH----HHhhhhhhccchHHHHHHHHHHHhhccch
Confidence            99999999999999999999887644223333344333333333210    111223455677888889998765 8899


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHHhhh
Q 015496          324 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVML  367 (405)
Q Consensus       324 ~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~~  367 (405)
                      .|.....+...+..+.-+-. +. ..|+...+..|-++++....
T Consensus       241 ~eM~feila~~aend~Vkl~-la-~~gl~e~~~~lv~~~k~~t~  282 (604)
T KOG4500|consen  241 DEMIFEILAKAAENDLVKLS-LA-QNGLLEDSIDLVRNMKDFTK  282 (604)
T ss_pred             hhHHHHHHHHHhcCcceeee-hh-hcchHHHHHHHHHhcccccc
Confidence            99999999999986543333 33 45677666666666655443

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=98.19  E-value=1.9e-05  Score=85.07  Aligned_cols=116  Identities=15%  Similarity=0.076  Sum_probs=104.2

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015496          217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH  296 (405)
Q Consensus       217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~  296 (405)
                      -+|..+++|.+..+.++..|.+-|--++.++..+...+.+.|||+.|+.+|.+.  ...+++.|++++.||...+   .+
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~~---~~  308 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFGK---ST  308 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhccc---CC
Confidence            468889999998899999999999999999999999999999999999999987  5678999999999999763   44


Q ss_pred             CCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhcC
Q 015496          297 KVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       297 ~~~~~~l~~~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~~~  337 (405)
                      .+.+-.+.+.+.++.++.+|+. .|.+++|.+..+|++|.+.
T Consensus       309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~  350 (717)
T KOG1048|consen  309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN  350 (717)
T ss_pred             cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence            4567788899999999999997 5999999999999999986

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.10  E-value=5.5e-06  Score=60.77  Aligned_cols=55  Identities=18%  Similarity=0.353  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015496          188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL  243 (405)
Q Consensus       188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~l  243 (405)
                      +.+|..|+|+||+++++.+...+.+ ....+|.|+.+|+++++.||..|+|||++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            5789999999999999888777763 457999999999998899999999999975

...

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.10  E-value=0.00035  Score=78.98  Aligned_cols=27  Identities=19%  Similarity=0.346  Sum_probs=20.3

Q ss_pred             cHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496          308 FLKSVVDLTASADLDLQEKALAAIKNL  334 (405)
Q Consensus       308 ~l~~Lv~LL~~~D~~v~E~al~aL~~L  334 (405)
                      .++.|+.+|..++.+||..|+++|..+
T Consensus       839 a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        839 AVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            456777777777888888888777775

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.06  E-value=1.4e-05  Score=63.54  Aligned_cols=87  Identities=21%  Similarity=0.287  Sum_probs=69.4

Q ss_pred             HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496          176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  254 (405)
Q Consensus       176 i~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f  254 (405)
                      ++.|++.| +++++.+|..|+++||.+-  ++         .++|.|+++++++++.+|..|+++|+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            58899988 8899999999999999543  12         45899999999989999999999999871          


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015496          255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  285 (405)
Q Consensus       255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs  285 (405)
                       ....++.|..++.++. +..+|..|+..|+
T Consensus        60 -~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDD-DEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence             2237889999998863 5556777777663

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.06  E-value=4.2e-05  Score=71.91  Aligned_cols=184  Identities=16%  Similarity=0.158  Sum_probs=118.0

Q ss_pred             hcCCCCHHHHHHHHHHHHHccCCC---CchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496          141 NNSTLSLEDSQRALQELLILVEPI---DNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL  215 (405)
Q Consensus       141 ~~~~~t~e~k~~AL~~L~~Lve~i---DnA~~~~~~--Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~  215 (405)
                      .+.+.+=+.+..|++.|..++...   +....+...  ..+..++..+++....|-..|+.+++.++..-...-+.+ -.
T Consensus        15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~   93 (228)
T PF12348_consen   15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-AD   93 (228)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HH
T ss_pred             cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HH
Confidence            445567789999999999988554   444444432  445677788888889999999999999998633332222 23


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496          216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  295 (405)
Q Consensus       216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~  295 (405)
                      ..+|.|++.+.++...++..|..+|-.++.+.+.....+     ...+...+++.  +..+|..++..+..++..     
T Consensus        94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~-----  161 (228)
T PF12348_consen   94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSK--NPQVREECAEWLAIILEK-----  161 (228)
T ss_dssp             HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-----
Confidence            578999999999888899999999999998866211111     35556666665  678899999999988753     


Q ss_pred             CCCcchhHHh----CCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          296 HKVEPPLFRD----RFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       296 ~~~~~~~l~~----~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      .+.....+..    ..+++.+..++...++++|+.|-.++..+.+.
T Consensus       162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            1111122222    34788888999999999999999999998754

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=98.06  E-value=0.00023  Score=80.84  Aligned_cols=246  Identities=15%  Similarity=0.140  Sum_probs=179.7

Q ss_pred             HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC---CCHHHHHHHHHHHHHHhcCCh-------------------
Q 015496          149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH---PDTDIRKISAWILGKASQNNP-------------------  206 (405)
Q Consensus       149 ~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s---~~~~Ir~~Aa~~Lg~~aqNN~-------------------  206 (405)
                      +++.-...|.++..+.+..-.+...|.++.|+++|.-   .+.+.|..|-.+|-||+.++|                   
T Consensus       210 D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr  289 (2195)
T KOG2122|consen  210 DEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR  289 (2195)
T ss_pred             CHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence            4455555666666677777788889999999999964   356889999999999998855                   


Q ss_pred             ----------------------------------------HhHHHHHHcCcHHHHHHhhcCC--------C----HHHHH
Q 015496          207 ----------------------------------------LVQKQVLELGALSKLMKMVKSS--------F----VEEAV  234 (405)
Q Consensus       207 ----------------------------------------~~Q~~vle~G~lp~Ll~LL~s~--------~----~~v~~  234 (405)
                                                              +.+.++-+.|++..+-.|+.-+        .    -.+|.
T Consensus       290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRr  369 (2195)
T KOG2122|consen  290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRR  369 (2195)
T ss_pred             HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence                                                    4445555556766666655422        1    24688


Q ss_pred             HHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015496          235 KALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV  313 (405)
Q Consensus       235 kAl~ALS~lir~~~~~~~~f~~~-gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv  313 (405)
                      .|..||-||.-+...+...++.. |-+..++..|.+.  ...+..-.+.+|.||.=    ..+...+..|.+.|-+..|+
T Consensus       370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~--peeL~QV~AsvLRNLSW----RAD~nmKkvLrE~GsVtaLa  443 (2195)
T KOG2122|consen  370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA--PEELLQVYASVLRNLSW----RADSNMKKVLRETGSVTALA  443 (2195)
T ss_pred             HHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC--hHHHHHHHHHHHHhccc----cccccHHHHHHhhhhHHHHH
Confidence            89999999998887777777765 5578999999876  44577788999999974    35666777888999999998


Q ss_pred             Hhc-cCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH-------------------HHHHhh-hchhhh
Q 015496          314 DLT-ASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ-------------------QLQEVM-LEEDQR  372 (405)
Q Consensus       314 ~LL-~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~-------------------~~~~l~-~~~~q~  372 (405)
                      .+- ..........+|.||+||..+..+.+..|-.-.|.+.+|+.++.                   ....++ +.++++
T Consensus       444 ~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yR  523 (2195)
T KOG2122|consen  444 ACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYR  523 (2195)
T ss_pred             HHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHH
Confidence            874 44455677789999999998877766665445666666666651                   112233 368899


Q ss_pred             hhHHHHHHHHHHHHHHHhhhccccccchh
Q 015496          373 DYAMDVEALRREVELIFFRKLGKVGTRLC  401 (405)
Q Consensus       373 ~~~~d~~~l~~e~~~~~~~kl~~i~~~~~  401 (405)
                      +...+-.-|-...+.+-..-| -|..-+|
T Consensus       524 QILR~~NCLq~LLQ~LKS~SL-TiVSNaC  551 (2195)
T KOG2122|consen  524 QILRRHNCLQTLLQHLKSHSL-TIVSNAC  551 (2195)
T ss_pred             HHHHHhhHHHHHHHHhhhcce-EEeecch
Confidence            999888877777777777765 7788777

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.03  E-value=5e-06  Score=57.49  Aligned_cols=38  Identities=32%  Similarity=0.691  Sum_probs=35.9

Q ss_pred             CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015496          165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS  202 (405)
Q Consensus       165 DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~a  202 (405)
                      ++...+++.||+|+|+.+|+++++++|..|+|+|+|++
T Consensus         3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            56778999999999999999999999999999999987

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF05536 Neurochondrin: Neurochondrin

Probab=98.00  E-value=0.00074  Score=72.24  Aligned_cols=197  Identities=15%  Similarity=0.140  Sum_probs=143.9

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-hh---HHHhcCCHHHHHHhcCC-------CCHHHHHHHHHH
Q 015496          129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-AN---DLSKLGGLSVLVGQLNH-------PDTDIRKISAWI  197 (405)
Q Consensus       129 d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A~---~~~~~Ggi~~Lv~lL~s-------~~~~Ir~~Aa~~  197 (405)
                      ..+.+++++..|+...  .++|..+|--+..++.+-|. +.   .+.+.=|..-+-++|++       +....+.-|..+
T Consensus         3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv   80 (543)
T PF05536_consen    3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV   80 (543)
T ss_pred             chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence            3567889999998875  58899999999999987652 21   24455567777889986       457889999999


Q ss_pred             HHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHH
Q 015496          198 LGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRL  276 (405)
Q Consensus       198 Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~-~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl  276 (405)
                      |+..++ .|+....--=-+-||.|++++.+.+. ++...++..|.+++ .++.+.+.|++.|+++.|.+++.+.   ...
T Consensus        81 L~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~---~~~  155 (543)
T PF05536_consen   81 LAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ---SFQ  155 (543)
T ss_pred             HHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC---cch
Confidence            999998 45554221112679999999988776 78888999999998 7899999999999999999999874   345


Q ss_pred             HHHHHHHHHHHhhchhccCCCC----cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          277 HRKAVSLVGDLAKCQLENMHKV----EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       277 ~~kA~~lLs~L~~~~~~~~~~~----~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                      +..|..++.+++...    ..+    ....+  ..+++.+...........+-..+..|..+....
T Consensus       156 ~E~Al~lL~~Lls~~----~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  156 MEIALNLLLNLLSRL----GQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRS  215 (543)
T ss_pred             HHHHHHHHHHHHHhc----chhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence            788999999998631    111    11111  145555666665554455556677777777654

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.00023  Score=79.54  Aligned_cols=155  Identities=15%  Similarity=0.103  Sum_probs=119.8

Q ss_pred             HHHHH----HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 015496          176 LSVLV----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ  251 (405)
Q Consensus       176 i~~Lv----~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~  251 (405)
                      +|+++    .+|.|++..-|..|..+|+.++-+-+++-...+ -..++..+..|+++++.||-.|+.|||-+..+..+-.
T Consensus       346 ~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i  424 (1075)
T KOG2171|consen  346 LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI  424 (1075)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence            55555    466799999999999999999999665554433 2567777888899999999999999999999998888


Q ss_pred             HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHH-HHHHhccCCChHHHHHHHHH
Q 015496          252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK-SVVDLTASADLDLQEKALAA  330 (405)
Q Consensus       252 ~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~-~Lv~LL~~~D~~v~E~al~a  330 (405)
                      +.....-.++.|+..+.+. ..++++..|+.++-|+...    ..++...... .+++. .+-.++.++...++|.++.+
T Consensus       425 qk~~~e~l~~aL~~~ld~~-~~~rV~ahAa~al~nf~E~----~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvta  498 (1075)
T KOG2171|consen  425 QKKHHERLPPALIALLDST-QNVRVQAHAAAALVNFSEE----CDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTA  498 (1075)
T ss_pred             HHHHHHhccHHHHHHhccc-CchHHHHHHHHHHHHHHHh----CcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            8888777888999999887 4789999999999998753    2222221111 14444 34445677899999999999


Q ss_pred             HHHHhcC
Q 015496          331 IKNLLQL  337 (405)
Q Consensus       331 L~~L~~~  337 (405)
                      |.+.+..
T Consensus       499 IasvA~A  505 (1075)
T KOG2171|consen  499 IASVADA  505 (1075)
T ss_pred             HHHHHHH
Confidence            9999864

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=97.99  E-value=0.00012  Score=70.84  Aligned_cols=103  Identities=13%  Similarity=0.096  Sum_probs=91.3

Q ss_pred             CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH
Q 015496          187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD  265 (405)
Q Consensus       187 ~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~  265 (405)
                      +..+...|..+|--++-.+|.+|..+.+..++..|+.+|.. ..+.++..++.+|.++..++|+++..|-+.||+..+..
T Consensus       104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~  183 (257)
T PF08045_consen  104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS  183 (257)
T ss_pred             hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence            45567789999999999999999999999999999999954 45788999999999999999999999999999999999


Q ss_pred             hhcCCCccHHHHHHHHHHHHHHhh
Q 015496          266 ILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       266 lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      ++++.+.+..++.|.+-++.-.+.
T Consensus       184 llk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  184 LLKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HHccccccHHHhHHHHHHHHHHHc
Confidence            999887788888887766665554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=0.00082  Score=73.22  Aligned_cols=212  Identities=14%  Similarity=0.084  Sum_probs=165.2

Q ss_pred             hcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcH
Q 015496          141 NNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL  218 (405)
Q Consensus       141 ~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~~~~~Ggi~~Lv~-lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~l  218 (405)
                      -+.+...|-...|...|.+|+|-. ....-++..+.||.|+. ++.-..-++-+++..+|-.+.+..|   .++++.|+|
T Consensus       220 L~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l  296 (1051)
T KOG0168|consen  220 LSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGAL  296 (1051)
T ss_pred             HhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccH
Confidence            344556788889999999999875 44556778899999986 5567899999999999999998766   578999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015496          219 SKLMKMVKSSFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK  297 (405)
Q Consensus       219 p~Ll~LL~s~~~~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~  297 (405)
                      ...+..|.--+..++.+|+...+|+|..- +.....|.  ..+|.|..+|+..  +.+....++-++..++.+.  .+.+
T Consensus       297 ~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~--D~k~ies~~ic~~ri~d~f--~h~~  370 (1051)
T KOG0168|consen  297 SAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQ--DKKPIESVCICLTRIADGF--QHGP  370 (1051)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhc--ccCh
Confidence            99999997767788999999999999884 44444443  5789999999875  5667788888888887543  3567


Q ss_pred             CcchhHHhCCcHHHHHHhccCCC----hHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHH
Q 015496          298 VEPPLFRDRFFLKSVVDLTASAD----LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL  362 (405)
Q Consensus       298 ~~~~~l~~~g~l~~Lv~LL~~~D----~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~  362 (405)
                      +..+.+...|++.....||...+    ..+-.-..+.|..++++......... ..+|...|..+..+|
T Consensus       371 ~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  371 DKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQGY  438 (1051)
T ss_pred             HHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHhcc
Confidence            77888899999999999987653    34555667777888877555444443 578888888888777

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=97.97  E-value=0.00015  Score=82.22  Aligned_cols=201  Identities=17%  Similarity=0.121  Sum_probs=150.3

Q ss_pred             HHHHHHHHcc-CCCCchhHHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH-HcCcHHHHHHhhc-C
Q 015496          152 RALQELLILV-EPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVK-S  227 (405)
Q Consensus       152 ~AL~~L~~Lv-e~iDnA~~~~~~-Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vl-e~G~lp~Ll~LL~-s  227 (405)
                      -|+-.|-+|. -++.|...++.. |.+..+|..|.+..++|..-.+.+|.|+.=+-...-+.++ +.|-+..|....- .
T Consensus       370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~  449 (2195)
T KOG2122|consen  370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN  449 (2195)
T ss_pred             HHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh
Confidence            3445555555 466777778877 5578999999999999999999999999876555555555 6688888887653 3


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496          228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  304 (405)
Q Consensus       228 ~~~~v~~kAl~ALS~lir~~~~~~~~f~~~-gGi~~L~~lL~s~--~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~  304 (405)
                      ..+..-+..|.||=||..|+..+...|+.. |.+.+|+..|...  ....++...+-..|.|....-  ...+.+++.++
T Consensus       450 ~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I--At~E~yRQILR  527 (2195)
T KOG2122|consen  450 KKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI--ATCEDYRQILR  527 (2195)
T ss_pred             cccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh--hccchHHHHHH
Confidence            333444445666667777888888899885 6789999999754  234566667777777765432  34567889999


Q ss_pred             hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHH
Q 015496          305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTAL  355 (405)
Q Consensus       305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L  355 (405)
                      ++.++..|+.+|++....+.-.+|.+|+||..-+....+.+. +-|..+.|
T Consensus       528 ~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~Lw-D~gAv~mL  577 (2195)
T KOG2122|consen  528 RHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLW-DDGAVPML  577 (2195)
T ss_pred             HhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHH-hcccHHHH
Confidence            999999999999999999999999999999987777777777 55553333

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=97.94  E-value=0.00035  Score=71.30  Aligned_cols=231  Identities=14%  Similarity=0.000  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC-C-------CHHHHHHHHHHHHHHhcCChHhHHHHHHcC-cH
Q 015496          148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-P-------DTDIRKISAWILGKASQNNPLVQKQVLELG-AL  218 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s-~-------~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G-~l  218 (405)
                      +-.+-.++.|....|+-.-.-.|.+.|.+..++.+++. +       .-.+-..++..+.-+..+.+..|.. ...+ .+
T Consensus       239 d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L-~~~p~~l  317 (604)
T KOG4500|consen  239 DIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKL-HADPQFL  317 (604)
T ss_pred             chhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHH-hcCcHHH
Confidence            34455688888888887777788889999999988864 2       2334566777777777776655554 4444 89


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcC---CCccHHHHHHHHHHHHHHhhchhccC
Q 015496          219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN---SSFEIRLHRKAVSLVGDLAKCQLENM  295 (405)
Q Consensus       219 p~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s---~~~~~kl~~kA~~lLs~L~~~~~~~~  295 (405)
                      ..+++.+.|++.........||+|++|.... .-.|++.|-+..|+.+|..   ...+++++.-++.++.||+-      
T Consensus       318 ~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~-ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I------  390 (604)
T KOG4500|consen  318 DFLESWFRSDDSNLITMGSLAIGNFARRDDI-CIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI------  390 (604)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhhhccchH-HHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc------
Confidence            9999999999988899999999999998655 4557888999999999854   23578899999999999984      


Q ss_pred             CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHHhhhchhhhhhH
Q 015496          296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYA  375 (405)
Q Consensus       296 ~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~~~~~q~~~~  375 (405)
                      +...+..+...|+++.+...|+...+.++-+-+..+.-+....+......   +-=+.++++|..=      +. -.+|+
T Consensus       391 Pv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL---~kn~~l~ekLv~W------sk-s~D~a  460 (604)
T KOG4500|consen  391 PVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACEL---AKNPELFEKLVDW------SK-SPDFA  460 (604)
T ss_pred             cCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHH---hcCHHHHHHHHHh------hh-CCccc
Confidence            44566788899999999999999999999888888777765422111111   1112233333211      22 34455


Q ss_pred             -HHHHHHHHHHHHHHhhhcccc
Q 015496          376 -MDVEALRREVELIFFRKLGKV  396 (405)
Q Consensus       376 -~d~~~l~~e~~~~~~~kl~~i  396 (405)
                       .--|..|-..-++.|+|+..|
T Consensus       461 Gv~gESnRll~~lIkHs~~kdv  482 (604)
T KOG4500|consen  461 GVAGESNRLLLGLIKHSKYKDV  482 (604)
T ss_pred             hhhhhhhHHHHHHHHhhHhhhh
Confidence             346777888888888886444

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.00077  Score=72.95  Aligned_cols=221  Identities=19%  Similarity=0.193  Sum_probs=166.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC--CCCHHHHHHHHHHHHHHhcC
Q 015496          127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN--HPDTDIRKISAWILGKASQN  204 (405)
Q Consensus       127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqN  204 (405)
                      ++.++.+....+.+.++. =.|+|..|+..|--+....   +.-+-.-|+++||.-|.  ..++++-..|..++.++..+
T Consensus        18 ~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~   93 (970)
T KOG0946|consen   18 QSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSH   93 (970)
T ss_pred             ccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence            355667777777777653 3577777766666553332   23455678999999996  47899999999999999987


Q ss_pred             Ch--------H--------hHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHh-cCcHHHHHH
Q 015496          205 NP--------L--------VQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYV-EAGDLMLQD  265 (405)
Q Consensus       205 N~--------~--------~Q~~vle-~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~-~~~~f~~-~gGi~~L~~  265 (405)
                      .+        .        ..+.+++ .+-|..|+..+...+-.||..++--|++++++-|. .++.++. .-|+.-|+.
T Consensus        94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd  173 (970)
T KOG0946|consen   94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD  173 (970)
T ss_pred             CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence            52        2        2344443 37888899999887778999999999999998654 5666655 469999999


Q ss_pred             hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC---C-hHHHHHHHHHHHHHhcCChhh
Q 015496          266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D-LDLQEKALAAIKNLLQLRTTE  341 (405)
Q Consensus       266 lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~---D-~~v~E~al~aL~~L~~~~~~~  341 (405)
                      +|.+..  .-+|-.++.+|..|..     .++.....+.=.+....|.+++...   | --|.+.++..|.+|+......
T Consensus       174 lL~Dsr--E~IRNe~iLlL~eL~k-----~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN  246 (970)
T KOG0946|consen  174 LLRDSR--EPIRNEAILLLSELVK-----DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN  246 (970)
T ss_pred             HHhhhh--hhhchhHHHHHHHHHc-----cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence            999863  3479999999999985     4555555555567778888888653   3 257899999999999987778


Q ss_pred             HHHHHhcCCchHHHHHHH
Q 015496          342 ALVLKDFCGLDTALERLR  359 (405)
Q Consensus       342 ~~~v~~~~Gl~~~L~~L~  359 (405)
                      .+.|+ ++|.-|+|.+|.
T Consensus       247 Q~~Fr-E~~~i~rL~klL  263 (970)
T KOG0946|consen  247 QNFFR-EGSYIPRLLKLL  263 (970)
T ss_pred             hhHHh-ccccHHHHHhhc
Confidence            88898 888878877666

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.85  E-value=0.00051  Score=68.26  Aligned_cols=185  Identities=18%  Similarity=0.130  Sum_probs=124.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChHhH
Q 015496          134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPLVQ  209 (405)
Q Consensus       134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s----~~~~Ir~~Aa~~Lg~~aqNN~~~Q  209 (405)
                      ...+..+.++  +.--...|+..|..++..-+....-...+.++.+++.|.+    ++.+++..|+.+++++.. ++..+
T Consensus       108 ~~fl~ll~~~--D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R  184 (312)
T PF03224_consen  108 SPFLKLLDRN--DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYR  184 (312)
T ss_dssp             HHHHHH-S-S--SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHH
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhH
Confidence            3344444443  3445566777788776554433333224556777777653    567788999999999996 58899


Q ss_pred             HHHHHcCcHHHHHHhh-----cCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015496          210 KQVLELGALSKLMKMV-----KSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  282 (405)
Q Consensus       210 ~~vle~G~lp~Ll~LL-----~s~~--~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~  282 (405)
                      ..|.+.|+++.|..++     .+..  ..+...+++++=.+.. ++.....+.+.+-++.|..+++.. ...|+-|-++.
T Consensus       185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~-~KEKvvRv~la  262 (312)
T PF03224_consen  185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDS-IKEKVVRVSLA  262 (312)
T ss_dssp             HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhc-ccchHHHHHHH
Confidence            9999999999999999     2222  2455666666665544 577788888889999999999876 36799999999


Q ss_pred             HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHH
Q 015496          283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKA  327 (405)
Q Consensus       283 lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~--~D~~v~E~a  327 (405)
                      ++.||+..    ........++..|+++.+-.+...  .|.|+.+..
T Consensus       263 ~l~Nl~~~----~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl  305 (312)
T PF03224_consen  263 ILRNLLSK----APKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL  305 (312)
T ss_dssp             HHHHTTSS----SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred             HHHHHHhc----cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999852    333467777888888877766655  388887754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.84  E-value=0.00075  Score=76.35  Aligned_cols=98  Identities=16%  Similarity=0.141  Sum_probs=54.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc----------
Q 015496          134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ----------  203 (405)
Q Consensus       134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq----------  203 (405)
                      ...++.|.++  ++..|..|++.|..+-          .-+.++.|+..|+++++.+|..|+..|+.+..          
T Consensus       624 ~~L~~~L~D~--d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~  691 (897)
T PRK13800        624 AELAPYLADP--DPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRD  691 (897)
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHH
Confidence            3444555443  5667777777776542          12346666666766777777777666665532          


Q ss_pred             ----CChHhHHHHHHc------CcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015496          204 ----NNPLVQKQVLEL------GALSKLMKMVKSSFVEEAVKALYTVSSL  243 (405)
Q Consensus       204 ----NN~~~Q~~vle~------G~lp~Ll~LL~s~~~~v~~kAl~ALS~l  243 (405)
                          .+|.++..+++.      +....|++.|.+++..+|..|+++|+.+
T Consensus       692 ~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~  741 (897)
T PRK13800        692 HLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV  741 (897)
T ss_pred             HhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence                133333333321      2334556666666666666666666653

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.81  E-value=0.0001  Score=61.51  Aligned_cols=67  Identities=18%  Similarity=0.194  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496          190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYV  256 (405)
Q Consensus       190 Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~~~~~~f~~  256 (405)
                      +|..-..+||+++.+|+.+|+.+.+.|+||.++..-.-+  ++-+++.|+|||-+++.+++++++.+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            466778899999999999999999999999999886544  4678999999999999999999887754

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.79  E-value=0.00043  Score=71.19  Aligned_cols=179  Identities=17%  Similarity=0.139  Sum_probs=138.7

Q ss_pred             HhcCCHHHHHHhcCCCC--HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCC
Q 015496          171 SKLGGLSVLVGQLNHPD--TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNN  247 (405)
Q Consensus       171 ~~~Ggi~~Lv~lL~s~~--~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~  247 (405)
                      ..-||+..|++++.+++  ..+|.+|+.+|-.+..  .+.++.|...| +..++-+.+.. ..+.+...+.-|.++-+|+
T Consensus       177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS  253 (832)
T KOG3678|consen  177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS  253 (832)
T ss_pred             hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence            34589999999998876  4569999999998875  45677887777 67777777543 3567778899999999999


Q ss_pred             hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHH
Q 015496          248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKA  327 (405)
Q Consensus       248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~a  327 (405)
                      ..-.+.++..||++.++.-.+..  ++.+.+.++.++.|.+-+    ...+....+++...-..|.-+-.+.|.-++-+|
T Consensus       254 eet~~~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~----~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A  327 (832)
T KOG3678|consen  254 EETCQRLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALH----GGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA  327 (832)
T ss_pred             HHHHHHHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhh----chhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence            99999999999999888776654  677899999999998754    234455566676777777777777788889999


Q ss_pred             HHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH
Q 015496          328 LAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  360 (405)
Q Consensus       328 l~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~  360 (405)
                      +.|+..|+... +....++ .+|-..+++.|..
T Consensus       328 ClAV~vlat~K-E~E~~Vr-kS~TlaLVEPlva  358 (832)
T KOG3678|consen  328 CLAVAVLATNK-EVEREVR-KSGTLALVEPLVA  358 (832)
T ss_pred             HHHHhhhhhhh-hhhHHHh-hccchhhhhhhhh
Confidence            99999999874 4445565 6777666666654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.78  E-value=0.0017  Score=68.20  Aligned_cols=171  Identities=18%  Similarity=0.183  Sum_probs=107.9

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      +.+.|.-+.-.+..+.+.-.   ++..+ .+..+.+-|+++++.+|..|.+++++++  +|+.-+.+     ++.+.+++
T Consensus        55 ~~~~Krl~yl~l~~~~~~~~---~~~~l-~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l-----~~~v~~ll  123 (526)
T PF01602_consen   55 DLELKRLGYLYLSLYLHEDP---ELLIL-IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPL-----IPDVIKLL  123 (526)
T ss_dssp             SHHHHHHHHHHHHHHTTTSH---HHHHH-HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHH-----HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhcch---hHHHH-HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHH-----HHHHHHHh
Confidence            45566666555555543322   22222 4666667777888888888888888877  45555443     57778888


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                      .++++-||.+|+.|+..+.+.+|.....   . -++.|..+|.++  ++.++..|+.++..+ .     .++.... -.-
T Consensus       124 ~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~d~--~~~V~~~a~~~l~~i-~-----~~~~~~~-~~~  190 (526)
T PF01602_consen  124 SDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLSDK--DPSVVSAALSLLSEI-K-----CNDDSYK-SLI  190 (526)
T ss_dssp             HSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTTHS--SHHHHHHHHHHHHHH-H-----CTHHHHT-THH
T ss_pred             cCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhccCC--cchhHHHHHHHHHHH-c-----cCcchhh-hhH
Confidence            8877888888888888888777765432   1 267788888654  567777787777777 2     1221111 111


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChh
Q 015496          306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT  340 (405)
Q Consensus       306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~  340 (405)
                      ..+++.|..++...++-.+..+++.+..+......
T Consensus       191 ~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~  225 (526)
T PF01602_consen  191 PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE  225 (526)
T ss_dssp             HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred             HHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence            24444455555677888888888888877765433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.73  E-value=0.0013  Score=69.01  Aligned_cols=188  Identities=18%  Similarity=0.182  Sum_probs=133.0

Q ss_pred             CHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015496          128 SDAQLIQIAIDDLNNS--TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN  205 (405)
Q Consensus       128 ~d~~lmk~al~~L~~~--~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN  205 (405)
                      .+.+.+.-++..+...  +.++..+..||..+..+. ..+.+..     .++.+.++|.++++-||..|+-++..+.+.+
T Consensus        72 ~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~  145 (526)
T PF01602_consen   72 EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKD  145 (526)
T ss_dssp             TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Confidence            3455554455444331  235678888999999865 3344444     4778889999999999999999999999987


Q ss_pred             hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015496          206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  285 (405)
Q Consensus       206 ~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs  285 (405)
                      |..-.   .. .++.+.+++.+.++.++..|+.++..+ +.++.....+ -..-+..|..++...  ++-++.+++.++.
T Consensus       146 p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~--~~~~q~~il~~l~  217 (526)
T PF01602_consen  146 PDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDP--DPWLQIKILRLLR  217 (526)
T ss_dssp             HCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCC--SHHHHHHHHHHHT
T ss_pred             HHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhccccc--chHHHHHHHHHHH
Confidence            76433   22 689999999888899999999999999 5555432211 123355555556554  9999999988888


Q ss_pred             HHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          286 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       286 ~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      .++.     ..+   ..-....+++.+..++.+.+..+.-.+.+++..+...
T Consensus       218 ~~~~-----~~~---~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~  261 (526)
T PF01602_consen  218 RYAP-----MEP---EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS  261 (526)
T ss_dssp             TSTS-----SSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             hccc-----CCh---hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence            7762     222   1111157899999999988888988888888887753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=0.0024  Score=71.09  Aligned_cols=183  Identities=17%  Similarity=0.150  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC
Q 015496          150 SQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS  228 (405)
Q Consensus       150 k~~AL~~L~~Lve~iDnA~~~~~-~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~  228 (405)
                      |++||.-|..+++---.|-++.= .|.+|.++++|+++-.++|.-=+.+=+.|-.=.|.||...++.++-..+++.|.++
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~  566 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS  566 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence            56777777776554445665543 58999999999999999998888888888877899999999999999999999873


Q ss_pred             -C--HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          229 -F--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       229 -~--~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                       .  ++-|..|.+-|+.+++|++-+|+...+.|-+.+-...|.++. ..-+|.=.+-+|.-|=.+    -+.. +=.=++
T Consensus       567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d----~~~A-rw~G~r  640 (1387)
T KOG1517|consen  567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCICLGRLWED----YDEA-RWSGRR  640 (1387)
T ss_pred             CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhh----cchh-hhcccc
Confidence             2  467899999999999999999999999998888888888752 455676677777776532    1211 111134


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                      .+....|..+|..+-++||..|..||+.++...
T Consensus       641 ~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~  673 (1387)
T KOG1517|consen  641 DNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG  673 (1387)
T ss_pred             ccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence            577788999999999999999999999999864

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.59  E-value=0.0076  Score=61.50  Aligned_cols=176  Identities=18%  Similarity=0.163  Sum_probs=127.7

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH---HHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChh
Q 015496          174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ---KQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLA  249 (405)
Q Consensus       174 Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q---~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~  249 (405)
                      --|++.+++|...+.-+...++|+|+.++++-+..-   +.-+..|   .|-.++++ .+.....-|+.+|..++|. ++
T Consensus       114 ~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~---~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~e  189 (442)
T KOG2759|consen  114 TEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKG---FLKEQLQSSTNNDYIQFAARCLQTLLRV-DE  189 (442)
T ss_pred             cchHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHH---HHHHHHhccCCCchHHHHHHHHHHHhcC-cc
Confidence            359999999999999999999999999998533211   1111122   23334444 3455677788899999985 67


Q ss_pred             hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHH
Q 015496          250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKAL  328 (405)
Q Consensus       250 ~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al  328 (405)
                      -+..|+.++|+..|+..+.+.+.+..+|-..++++--|..      +|...+.+..-+.++.|+++++.. ...|..-++
T Consensus       190 yR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF------n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivl  263 (442)
T KOG2759|consen  190 YRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF------NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVL  263 (442)
T ss_pred             hhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc------CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999996555678899999999988875      345556666679999999999874 455666667


Q ss_pred             HHHHHHhcCCh------hhHHHHHhcCCchHHHHHHHH
Q 015496          329 AAIKNLLQLRT------TEALVLKDFCGLDTALERLRQ  360 (405)
Q Consensus       329 ~aL~~L~~~~~------~~~~~v~~~~Gl~~~L~~L~~  360 (405)
                      .++.++..-++      +....+. .+++++.+..|.+
T Consensus       264 ai~~Nll~k~~~~~~~k~~~~~mv-~~~v~k~l~~L~~  300 (442)
T KOG2759|consen  264 AIFRNLLDKGPDRETKKDIASQMV-LCKVLKTLQSLEE  300 (442)
T ss_pred             HHHHHHhccCchhhHHHHHHHHHH-hcCchHHHHHHHh
Confidence            77788887663      2223344 5888888777764

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.54  E-value=0.00016  Score=49.04  Aligned_cols=39  Identities=31%  Similarity=0.535  Sum_probs=36.0

Q ss_pred             CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015496          165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ  203 (405)
Q Consensus       165 DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq  203 (405)
                      +++..+.+.||+++|+++|.+++++++..|+|+|+|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            477889999999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=97.53  E-value=0.00072  Score=71.93  Aligned_cols=140  Identities=14%  Similarity=0.147  Sum_probs=111.5

Q ss_pred             CHHHHHHHHH---HHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015496          146 SLEDSQRALQ---ELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM  222 (405)
Q Consensus       146 t~e~k~~AL~---~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll  222 (405)
                      +.+..-.|+.   .++..|..+++.  +-...|..|||++|..++.-|+..+..+|.|++-.-...+..|+.+|+|..+.
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE  467 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence            3344444433   344444445544  67778999999999889999999999999999988888899999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          223 KMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       223 ~LL~s~~~~v~~kAl~ALS~lir~~~~-~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      +++.+.+..+|.+++|+|-.+.-+... -+.++..-=+-..|..+..++  +..+|..+..++.||.-
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhc
Confidence            999999999999999999999887644 344444444556677777776  78899999999999974

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.40  E-value=0.00043  Score=46.89  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=35.3

Q ss_pred             hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015496          206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI  244 (405)
Q Consensus       206 ~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~li  244 (405)
                      +..+..+++.|+++.|++++++++..++..++|+|+|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            446778899999999999999888999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.40  E-value=0.00025  Score=60.82  Aligned_cols=86  Identities=22%  Similarity=0.282  Sum_probs=66.3

Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHH
Q 015496          118 KELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAW  196 (405)
Q Consensus       118 ~~a~~~~~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~-~~Ggi~~Lv~lL~s~~~~Ir~~Aa~  196 (405)
                      +|-...| ..++.+++|.++++|.++. ++.....|+.+|-++|....+.+.++ ++|+=..++.++++++++||.+|..
T Consensus        31 ~ENa~kf-~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~  108 (119)
T PF11698_consen   31 RENADKF-EENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALL  108 (119)
T ss_dssp             HHHSGGG-SSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHH
T ss_pred             HHHHHHH-HHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHH
Confidence            3333444 3367899999999996554 55667789999999999888888777 5677788889999999999999999


Q ss_pred             HHHHHhcCC
Q 015496          197 ILGKASQNN  205 (405)
Q Consensus       197 ~Lg~~aqNN  205 (405)
                      ++..+..+|
T Consensus       109 avQklm~~~  117 (119)
T PF11698_consen  109 AVQKLMVNN  117 (119)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHhc
Confidence            999887654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.39  E-value=0.0078  Score=61.51  Aligned_cols=184  Identities=17%  Similarity=0.137  Sum_probs=135.4

Q ss_pred             CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496          145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  224 (405)
Q Consensus       145 ~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L  224 (405)
                      ....+|++||.=+..+++-.+..+. ...|.+..++.+.++++..+|..|..+|+.++--||+   .+.++||+..|++.
T Consensus        80 ~~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~  155 (371)
T PF14664_consen   80 KNDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRA  155 (371)
T ss_pred             CChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHH
Confidence            3567899999999888765444433 4778899999999999999999999999999998884   46789999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC-----CccH--HHHHHHHHHHHHHhhchhccCCC
Q 015496          225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----SFEI--RLHRKAVSLVGDLAKCQLENMHK  297 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~-----~~~~--kl~~kA~~lLs~L~~~~~~~~~~  297 (405)
                      +-+++.++....+.++-.++ ++|..++.+...--++.|..-+.+.     +.+.  ..-..+..++..+.++     =+
T Consensus       156 l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs-----W~  229 (371)
T PF14664_consen  156 LIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS-----WP  229 (371)
T ss_pred             HHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-----CC
Confidence            98766567777888888886 5677777666544566666555433     1122  2345577777777653     11


Q ss_pred             CcchhHHhC-CcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          298 VEPPLFRDR-FFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       298 ~~~~~l~~~-g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                      ...-.-.+. ..++.|++.|..+++++++..+..+..+....
T Consensus       230 GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik  271 (371)
T PF14664_consen  230 GLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK  271 (371)
T ss_pred             ceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence            111111122 57999999999999999999999999988653

>PTZ00429 beta-adaptin; Provisional

Probab=97.32  E-value=0.058  Score=59.86  Aligned_cols=164  Identities=15%  Similarity=0.098  Sum_probs=125.3

Q ss_pred             CHHHHHHHHHHHHHc-cCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496          146 SLEDSQRALQELLIL-VEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  224 (405)
Q Consensus       146 t~e~k~~AL~~L~~L-ve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L  224 (405)
                      +...|..++..+-.+ ....|...      +++-+++++.+++.++|...--.+.+.+..+|+..-.     ++..|.+=
T Consensus        45 ~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KD  113 (746)
T PTZ00429         45 DSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQD  113 (746)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHH
Confidence            345666666654443 33444322      5778889999999999999999999999888865432     46788888


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496          225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  304 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~  304 (405)
                      +.++++-+|.-|+..+|++ |. +...+.+     +..+.+++.+.  ++.+|++|+.++..+...     +++   .+.
T Consensus       114 l~d~Np~IRaLALRtLs~I-r~-~~i~e~l-----~~~lkk~L~D~--~pYVRKtAalai~Kly~~-----~pe---lv~  176 (746)
T PTZ00429        114 TTNSSPVVRALAVRTMMCI-RV-SSVLEYT-----LEPLRRAVADP--DPYVRKTAAMGLGKLFHD-----DMQ---LFY  176 (746)
T ss_pred             cCCCCHHHHHHHHHHHHcC-Cc-HHHHHHH-----HHHHHHHhcCC--CHHHHHHHHHHHHHHHhh-----Ccc---ccc
Confidence            8888899999999999997 32 4433333     46788888875  678999999999998742     332   345


Q ss_pred             hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      +.++++.|.++|...|+.++-.|+.+|..+...
T Consensus       177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence            678999999999999999999999999999754

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.28  E-value=0.0042  Score=54.60  Aligned_cols=110  Identities=14%  Similarity=0.056  Sum_probs=93.1

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      +.|.|+..+-+|.++.-+.-|=.-+..+..+..++..|..++..+...+...|+|+|-. +...+.|++.+++|.++..+
T Consensus        30 ~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I~ea~g~plii~~l  108 (173)
T KOG4646|consen   30 NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFIREALGLPLIIFVL  108 (173)
T ss_pred             cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHHHHhcCCceEEeec
Confidence            56889999999999988888888899999999999999999999999999999999964 88889999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYV  256 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~  256 (405)
                      +++...+--.|+.++--+.-++..-++.+..
T Consensus       109 ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~  139 (173)
T KOG4646|consen  109 SSPPEITVHSAALFLQLLEFGERTERDELLS  139 (173)
T ss_pred             CCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence            9988766666666666666555555555544

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.016  Score=62.22  Aligned_cols=150  Identities=13%  Similarity=0.060  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh------c-CCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK------L-GGLSVLVGQLNHPDTDIRKISAWILGKAS  202 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~------~-Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~a  202 (405)
                      ++++....+.|.+++.  .-.+.|+.+|..++|+.  |.-+..      + =.+|.++.+.+|++|.||..|..|+-...
T Consensus       127 pelLp~L~~~L~s~d~--n~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i  202 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDY--NTCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI  202 (885)
T ss_pred             hhHHHHHHHHhcCCcc--cccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence            5777778888877652  23456777777777653  222111      1 14889999999999999999999998877


Q ss_pred             cCChHhHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhcCCCccHHHHHH
Q 015496          203 QNNPLVQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRK  279 (405)
Q Consensus       203 qNN~~~Q~~vle-~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~--~gGi~~L~~lL~s~~~~~kl~~k  279 (405)
                      -.++  |..... -..+..|..+..+++++||+..+.|+.-+..-.+.   .+.-  .|.++.+++..++.  +..+...
T Consensus       203 ~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~--dE~VALE  275 (885)
T KOG2023|consen  203 IIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDV--DENVALE  275 (885)
T ss_pred             ecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCc--chhHHHH
Confidence            6543  222221 25677888888888899999999999988765443   2322  35667777766665  5568889


Q ss_pred             HHHHHHHHhhc
Q 015496          280 AVSLVGDLAKC  290 (405)
Q Consensus       280 A~~lLs~L~~~  290 (405)
                      ||-+...+|.+
T Consensus       276 ACEFwla~aeq  286 (885)
T KOG2023|consen  276 ACEFWLALAEQ  286 (885)
T ss_pred             HHHHHHHHhcC
Confidence            99999999864

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.26  E-value=0.00088  Score=52.99  Aligned_cols=86  Identities=16%  Similarity=0.224  Sum_probs=66.4

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015496          218 LSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH  296 (405)
Q Consensus       218 lp~Ll~LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~  296 (405)
                      ||.|++.| +++++.+|..|+++|+.+-  .+         ..++.|..+++++  +..+|..|++++..+-        
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~--------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDE--DPMVRRAAARALGRIG--------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSS--SHHHHHHHHHHHHCCH--------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCC--CHHHHHHHHHHHHHhC--------
Confidence            68899999 7777899999999999441  12         2478999999765  7889999999998763        


Q ss_pred             CCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHH
Q 015496          297 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIK  332 (405)
Q Consensus       297 ~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~  332 (405)
                              +...++.|.+++.++ +..+++.|+.+|+
T Consensus        60 --------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --------DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                    234788899988876 5556888888774

>PTZ00429 beta-adaptin; Provisional

Probab=97.25  E-value=0.034  Score=61.71  Aligned_cols=159  Identities=12%  Similarity=0.148  Sum_probs=103.5

Q ss_pred             HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015496          112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTD  189 (405)
Q Consensus       112 ~r~~~L~~a~~~~-~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~  189 (405)
                      +|++-+|+++..+ .|.+...+.-..++.+.+.  +.+.|.-..--+..+.+ +.|.+-.     .+..|.+-+.++|+-
T Consensus        48 ~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~  120 (746)
T PTZ00429         48 RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPV  120 (746)
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHH
Confidence            3566677777665 3555555555666655443  56677666555555544 2232211     355667777788888


Q ss_pred             HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcC
Q 015496          190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN  269 (405)
Q Consensus       190 Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s  269 (405)
                      +|..|.++++++--  |..-+.     .++.+.+.+.+.++-||++|+.|+..+-+.+|.   .+...|-++.|..+|.+
T Consensus       121 IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D  190 (746)
T PTZ00429        121 VRALAVRTMMCIRV--SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLND  190 (746)
T ss_pred             HHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcC
Confidence            88888888887663  444443     346677777777788888888888888777664   23344556677777776


Q ss_pred             CCccHHHHHHHHHHHHHHhh
Q 015496          270 SSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       270 ~~~~~kl~~kA~~lLs~L~~  289 (405)
                      .  +..+...|+.++..++.
T Consensus       191 ~--dp~Vv~nAl~aL~eI~~  208 (746)
T PTZ00429        191 N--NPVVASNAAAIVCEVND  208 (746)
T ss_pred             C--CccHHHHHHHHHHHHHH
Confidence            4  56678888888877764

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.0014  Score=68.45  Aligned_cols=138  Identities=10%  Similarity=0.074  Sum_probs=111.4

Q ss_pred             HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCc
Q 015496          193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF  272 (405)
Q Consensus       193 ~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~  272 (405)
                      .++.+|-.++..-...+.-..++....+|+++|+.++.-+.--+..+++|.+=.+.+.+..|+..|.+..|+.++.+.  
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK--  485 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK--  485 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc--
Confidence            344556666666566666677788899999999987666667789999999989999999999999999999999976  


Q ss_pred             cHHHHHHHHHHHHHHhhchhccCCC-CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          273 EIRLHRKAVSLVGDLAKCQLENMHK-VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       273 ~~kl~~kA~~lLs~L~~~~~~~~~~-~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      |..+|.+..|.+.++..+    .++ +..+.+.+ -.+..++++.+.++..+|++++..|.+++.+
T Consensus       486 DdaLqans~wvlrHlmyn----cq~~ekf~~Lak-ig~~kvl~~~NDpc~~vq~q~lQilrNftc~  546 (743)
T COG5369         486 DDALQANSEWVLRHLMYN----CQKNEKFKFLAK-IGVEKVLSYTNDPCFKVQHQVLQILRNFTCD  546 (743)
T ss_pred             hhhhhhcchhhhhhhhhc----CcchhhhhhHHh-cCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence            567999999999999874    222 23344444 4567889999999999999999999999874

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.086  Score=54.98  Aligned_cols=188  Identities=16%  Similarity=0.123  Sum_probs=119.8

Q ss_pred             CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH-HHH--------
Q 015496          163 PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEA--------  233 (405)
Q Consensus       163 ~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~-~v~--------  233 (405)
                      -.+|.+++..+|.++.|+++....+++++......+-|++-. ...+..++..|.+|.|..++.++.. .+.        
T Consensus       334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S  412 (791)
T KOG1222|consen  334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS  412 (791)
T ss_pred             hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence            358999999999999999999999999999999999999975 4578888999999999999998742 222        


Q ss_pred             ----HHHHHH--------------------------HH-HHhcCChhhHHHHHhcCcHHHHH------------------
Q 015496          234 ----VKALYT--------------------------VS-SLIRNNLAGQEMFYVEAGDLMLQ------------------  264 (405)
Q Consensus       234 ----~kAl~A--------------------------LS-~lir~~~~~~~~f~~~gGi~~L~------------------  264 (405)
                          .|+++|                          ++ |++-+. .+.+.+++-.|+..|+                  
T Consensus       413 ~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRni  491 (791)
T KOG1222|consen  413 CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNI  491 (791)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccchHHHHHHHHh
Confidence                222222                          11 222111 1111112222333332                  


Q ss_pred             -------------------HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHH
Q 015496          265 -------------------DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDL  323 (405)
Q Consensus       265 -------------------~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v  323 (405)
                                         ..++.+ .+..+-..+...+.+|..     ++-+....+.+..++|.+-..|...  ..++
T Consensus       492 SqHeg~tqn~FidyvgdLa~i~~nd-~~E~F~~EClGtlanL~v-----~dldw~~ilq~~~LvPw~k~~L~pga~eddL  565 (791)
T KOG1222|consen  492 SQHEGATQNMFIDYVGDLAGIAKND-NSESFGLECLGTLANLKV-----TDLDWAKILQSENLVPWMKTQLQPGADEDDL  565 (791)
T ss_pred             hhccchHHHHHHHHHHHHHHHhhcC-chHHHHHHHHHHHhhccc-----CCCCHHHHHhhccccHHHHHhhcCCccchhh
Confidence                               222222 122333444444444432     2334555677789999998888764  4456


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH
Q 015496          324 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  360 (405)
Q Consensus       324 ~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~  360 (405)
                      +-...-+++.++.. ..|...+. ..|+-+.|..|.+
T Consensus       566 vL~~vi~~GT~a~d-~~cA~Lla-~a~~i~tlieLL~  600 (791)
T KOG1222|consen  566 VLQIVIACGTMARD-LDCARLLA-PAKLIDTLIELLQ  600 (791)
T ss_pred             hhHHHHHhhhhhhh-hHHHHHhC-ccccHHHHHHHHH
Confidence            66666778888765 45777777 5666666655553

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.11  E-value=0.024  Score=58.91  Aligned_cols=175  Identities=16%  Similarity=0.023  Sum_probs=127.0

Q ss_pred             CHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015496          175 GLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL-----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL  248 (405)
Q Consensus       175 gi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-----G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~  248 (405)
                      ....++++|+ ..++++.......+..+.+.+|...+.|.+.     ....+++.+|..++..+..+|++.|+.++...+
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~  133 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL  133 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc
Confidence            3556677775 4779999999999999999999988888876     567888899988888889999999999987644


Q ss_pred             hhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHH
Q 015496          249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEK  326 (405)
Q Consensus       249 ~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~  326 (405)
                      .........--++.|...+++. .+...+.-++.++..|.+      .+..+..|.+.++++.|+++|+..  +.+++=.
T Consensus       134 ~~~~~~~l~~~~~~l~~~l~~~-~~~~~~~~~v~~L~~LL~------~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~  206 (429)
T cd00256         134 AKMEGSDLDYYFNWLKEQLNNI-TNNDYVQTAARCLQMLLR------VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQ  206 (429)
T ss_pred             cccchhHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHhC------CchHHHHHHHccCHHHHHHHHhhccccHHHHHH
Confidence            3222111111234566667654 234566678889999985      467888888888999999999763  6788999


Q ss_pred             HHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496          327 ALAAIKNLLQLRTTEALVLKDFCGLDTALERL  358 (405)
Q Consensus       327 al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L  358 (405)
                      ++.+++-|+-.++ ...... ..++-+.+..+
T Consensus       207 ~ll~lWlLSF~~~-~~~~~~-~~~~i~~l~~i  236 (429)
T cd00256         207 SIFCIWLLTFNPH-AAEVLK-RLSLIQDLSDI  236 (429)
T ss_pred             HHHHHHHHhccHH-HHHhhc-cccHHHHHHHH
Confidence            9999999986543 333333 45555544444

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF05536 Neurochondrin: Neurochondrin

Probab=97.09  E-value=0.017  Score=61.99  Aligned_cols=153  Identities=16%  Similarity=0.121  Sum_probs=120.7

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH---HHHHHcCcHHHHHHhhcCC-------CHHHHHHHHHHHHHHh
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ---KQVLELGALSKLMKMVKSS-------FVEEAVKALYTVSSLI  244 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q---~~vle~G~lp~Ll~LL~s~-------~~~v~~kAl~ALS~li  244 (405)
                      .+...+.+|++.+.+=|+.+.-.+++++.+++..+   +.|.+.=+.+.|-+||+++       ....+.-|+.-|++.+
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            35677889998889999999999999999887433   4578887778888999883       2345778888899998


Q ss_pred             cCChhh--HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChH
Q 015496          245 RNNLAG--QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD  322 (405)
Q Consensus       245 r~~~~~--~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~  322 (405)
                      +. |..  ...|  .+=+|.|+.++.+.. +..+...+..+|..++.      .++-...+.+.|.++.|++.+.+ ...
T Consensus        86 ~~-~~~a~~~~~--~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias------~~~G~~aLl~~g~v~~L~ei~~~-~~~  154 (543)
T PF05536_consen   86 RD-PELASSPQM--VSRIPLLLEILSSSS-DLETVDDALQCLLAIAS------SPEGAKALLESGAVPALCEIIPN-QSF  154 (543)
T ss_pred             CC-hhhhcCHHH--HHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHc------CcHhHHHHHhcCCHHHHHHHHHh-Ccc
Confidence            84 332  2333  357899999998763 44678899999999984      46677789999999999999887 557


Q ss_pred             HHHHHHHHHHHHhcCC
Q 015496          323 LQEKALAAIKNLLQLR  338 (405)
Q Consensus       323 v~E~al~aL~~L~~~~  338 (405)
                      ..|.++.++.+++...
T Consensus       155 ~~E~Al~lL~~Lls~~  170 (543)
T PF05536_consen  155 QMEIALNLLLNLLSRL  170 (543)
T ss_pred             hHHHHHHHHHHHHHhc
Confidence            7899999999988653

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.13  Score=58.21  Aligned_cols=172  Identities=19%  Similarity=0.201  Sum_probs=113.0

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHH
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLM  222 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~--Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll  222 (405)
                      +...|..||-+|.-..|.-  .+.+...  ..++.++++|+.++|.||..|+.+||-++.+= |..|+.. ..-.+|.|+
T Consensus       361 ~w~~R~AaL~Als~i~EGc--~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~-~e~l~~aL~  437 (1075)
T KOG2171|consen  361 EWKERHAALLALSVIAEGC--SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH-HERLPPALI  437 (1075)
T ss_pred             CHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH-HHhccHHHH
Confidence            4567888888888877653  1222221  34667778999999999999999999999873 4444443 345677888


Q ss_pred             HhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH-HHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015496          223 KMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP  300 (405)
Q Consensus       223 ~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~-~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~  300 (405)
                      ..+.+.. +.++..|..|+=|....++...-.=+--+-++ .+..+++++  ...+|..++.+|...+.-    ....+.
T Consensus       438 ~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~--~~~v~e~vvtaIasvA~A----A~~~F~  511 (1075)
T KOG2171|consen  438 ALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS--KPYVQEQAVTAIASVADA----AQEKFI  511 (1075)
T ss_pred             HHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHH----HhhhhH
Confidence            8888754 57788788887777666544321111123444 333344454  678999999999999852    333333


Q ss_pred             hhHHhCCcHHHHHHhccCCC-hHHHHHHH
Q 015496          301 PLFRDRFFLKSVVDLTASAD-LDLQEKAL  328 (405)
Q Consensus       301 ~~l~~~g~l~~Lv~LL~~~D-~~v~E~al  328 (405)
                      +.+  ..+++.|.+.|.+.+ .+.++-.-
T Consensus       512 pY~--d~~Mp~L~~~L~n~~~~d~r~Lrg  538 (1075)
T KOG2171|consen  512 PYF--DRLMPLLKNFLQNADDKDLRELRG  538 (1075)
T ss_pred             hHH--HHHHHHHHHHHhCCCchhhHHHHh
Confidence            333  257888888887753 55554333

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.05  E-value=0.025  Score=57.81  Aligned_cols=201  Identities=15%  Similarity=0.115  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCCh
Q 015496          129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN--HPDTDIRKISAWILGKASQNNP  206 (405)
Q Consensus       129 d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqNN~  206 (405)
                      +-++-+.-++.+-+.+.+.+-...+..=|..++.-....-.|+...|+..++..|.  ..+-.+|-+.+.|+=-++-| |
T Consensus       153 e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~  231 (442)
T KOG2759|consen  153 ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-P  231 (442)
T ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-H
Confidence            44555555554444444555555565566666666667778888999999999883  35677888888888777775 5


Q ss_pred             HhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChh------------------------------------
Q 015496          207 LVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLA------------------------------------  249 (405)
Q Consensus       207 ~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~------------------------------------  249 (405)
                      ...+.+-..+.|+.|.+++++.. +.|-.-.+..+-|++-..+.                                    
T Consensus       232 ~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~d  311 (442)
T KOG2759|consen  232 HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDD  311 (442)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHH
Confidence            56677777899999999998754 34545566666666655531                                    


Q ss_pred             --------------------------------------------hHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496          250 --------------------------------------------GQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSL  283 (405)
Q Consensus       250 --------------------------------------------~~~~f~~--~gGi~~L~~lL~s~~~~~kl~~kA~~l  283 (405)
                                                                  +.+.|.+  .-.+..|+++|++++ |+.+..-||+=
T Consensus       312 i~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~-Dp~iL~VAc~D  390 (442)
T KOG2759|consen  312 IEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN-DPIILCVACHD  390 (442)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC-CCceeehhhhh
Confidence                                                        2333332  225667777777653 45556667777


Q ss_pred             HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496          284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       284 Ls~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~  336 (405)
                      |+.+.++     .|+-+..+.+.|+-..+.++++++|++|+-+|+.|+..|..
T Consensus       391 Ige~Vr~-----yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  391 IGEYVRH-----YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHh-----CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            7777763     57777788888999999999999999999999999988864

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=97.05  E-value=0.0074  Score=53.05  Aligned_cols=127  Identities=10%  Similarity=0.058  Sum_probs=96.3

Q ss_pred             CHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496          175 GLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM  253 (405)
Q Consensus       175 gi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~  253 (405)
                      =+..||.-. ...+.+-+.+..-=|+|.|- .|..-....+.+++..++.-|..+++.+.+-++.+|+|+|-+ +.+..-
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~   94 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHH
Confidence            345555443 45788888888878888885 588999999999999999999999999999999999999975 566777


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHH
Q 015496          254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK  310 (405)
Q Consensus       254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~  310 (405)
                      +.+++|++.++.+++++  ...+...++.++..|+.     ++...++.+....++.
T Consensus        95 I~ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~-----~~Rt~r~ell~p~Vv~  144 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSP--PEITVHSAALFLQLLEF-----GERTERDELLSPAVVR  144 (173)
T ss_pred             HHHhcCCceEEeecCCC--hHHHHHHHHHHHHHhcC-----cccchhHHhccHHHHH
Confidence            78899999999999987  34455667777777774     3444444444433333

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.89  E-value=0.01  Score=66.33  Aligned_cols=181  Identities=13%  Similarity=0.098  Sum_probs=135.1

Q ss_pred             CCCchhHHHhcCCHHHHHHhcCC-C--CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHH
Q 015496          163 PIDNANDLSKLGGLSVLVGQLNH-P--DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALY  238 (405)
Q Consensus       163 ~iDnA~~~~~~Ggi~~Lv~lL~s-~--~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~  238 (405)
                      +...--+++|-+|...+++.|.. +  +++-|..||.+|+.++.|-+.-|+..++.+.|..-+..+.++. +-+|.-.+-
T Consensus       543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i  622 (1387)
T KOG1517|consen  543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI  622 (1387)
T ss_pred             CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence            34455689999999999999975 3  4799999999999999999999999999999999999998864 556888999


Q ss_pred             HHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC--Ccch---------hHHhCC
Q 015496          239 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK--VEPP---------LFRDRF  307 (405)
Q Consensus       239 ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~--~~~~---------~l~~~g  307 (405)
                      +||-+=.+++.++-.=...+..+.|..+|.++  -+.+|.-|+|+|..|..+.-++.++  ...+         .-.+.-
T Consensus       623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~  700 (1387)
T KOG1517|consen  623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDL  700 (1387)
T ss_pred             HHHHHhhhcchhhhccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHH
Confidence            99999999999988888899999999999986  5678999999999998742000110  0000         001111


Q ss_pred             cH---HHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHH
Q 015496          308 FL---KSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVL  345 (405)
Q Consensus       308 ~l---~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v  345 (405)
                      +.   ..++.+++...+=++....-+|..++-+...+-..+
T Consensus       701 i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~v  741 (1387)
T KOG1517|consen  701 IIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVV  741 (1387)
T ss_pred             HHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHH
Confidence            11   245555666666777667777777665544433333

>TIGR02270 conserved hypothetical protein

Probab=96.84  E-value=0.017  Score=59.87  Aligned_cols=118  Identities=15%  Similarity=0.077  Sum_probs=93.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY  255 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~  255 (405)
                      +..|+..|.++++.+|..++..||.+-.           .++.+.|+.+|+++++.++..++.+++..  ..        
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r--~~--------  146 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAH--RH--------  146 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhh--cc--------
Confidence            8899999999999999999999996442           35678899999998899998888777762  11        


Q ss_pred             hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496          256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL  334 (405)
Q Consensus       256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L  334 (405)
                        .-.+.|..+|++.  +..++..|+.++..+-.                ...++.|...+.+.|+.|+..|+.++..+
T Consensus       147 --~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~----------------~~a~~~L~~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       147 --DPGPALEAALTHE--DALVRAAALRALGELPR----------------RLSESTLRLYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             --ChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc----------------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence              1245788888865  77899999999988752                23566677888999999999999888766

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=0.007  Score=63.46  Aligned_cols=170  Identities=11%  Similarity=0.138  Sum_probs=127.6

Q ss_pred             hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-
Q 015496          172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-  250 (405)
Q Consensus       172 ~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~-  250 (405)
                      +....++|++.|+.|+.-|...+...+.|.+---...|..+++.|.|..|+.++.+.++..+++.+|.+--+.-|+... 
T Consensus       429 d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~e  508 (743)
T COG5369         429 DYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNE  508 (743)
T ss_pred             ccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchh
Confidence            3456788999999988888899999999988777779999999999999999999988899999999999888776544 


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC----CcHHHHHHhccCCC-hHHHH
Q 015496          251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR----FFLKSVVDLTASAD-LDLQE  325 (405)
Q Consensus       251 ~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~----g~l~~Lv~LL~~~D-~~v~E  325 (405)
                      +-.|+...|+..++.+..++  ..++|.....++.|+.-..  .-++...+.+.+.    =+.+.+++-+...+ .++++
T Consensus       509 kf~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~--~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~  584 (743)
T COG5369         509 KFKFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDT--SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE  584 (743)
T ss_pred             hhhhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhccccc--ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence            55788889999999999887  7889999999999996310  0122333333322    24455666666654 44554


Q ss_pred             HHHHHHHHHhcCChhhHHHHH
Q 015496          326 KALAAIKNLLQLRTTEALVLK  346 (405)
Q Consensus       326 ~al~aL~~L~~~~~~~~~~v~  346 (405)
                      . +..|.+++...++-++.+.
T Consensus       585 ~-~yilv~~aa~d~~l~~~V~  604 (743)
T COG5369         585 G-CYILVRNAACDDTLDYIVQ  604 (743)
T ss_pred             h-HHHHHHHHhccchHHHHHH
Confidence            4 6666666665555566555

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.80  E-value=0.0042  Score=51.90  Aligned_cols=58  Identities=10%  Similarity=0.055  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          233 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       233 ~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      |.-.+..|+|++-.++..++.+.+.||+++++..-.-+..++-++.-|.|+|.+||.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~   60 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG   60 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC
Confidence            4557888999999999999999999999999998765546888999999999999963

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.79  E-value=0.038  Score=60.86  Aligned_cols=138  Identities=18%  Similarity=0.217  Sum_probs=82.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY  255 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~  255 (405)
                      ++-+++...+.+.++|..-=--+-..++++|  +.+++   +++.+.+=+.++++.+|..|+..+|.+ |.. ....   
T Consensus        57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~d~N~~iR~~AlR~ls~l-~~~-el~~---  126 (757)
T COG5096          57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQDPNEEIRGFALRTLSLL-RVK-ELLG---  126 (757)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhccCCCHHHHHHHHHHHHhc-ChH-HHHH---
Confidence            4555555556666666666666666666666  33333   456666666666677777777777655 322 1111   


Q ss_pred             hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                        ..++++.+++.++  ...+|+.|+.++..+-+     .++   ..+.+.|.+..+..++...|+.|...|+.+|..+-
T Consensus       127 --~~~~~ik~~l~d~--~ayVRk~Aalav~kly~-----ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         127 --NIIDPIKKLLTDP--HAYVRKTAALAVAKLYR-----LDK---DLYHELGLIDILKELVADSDPIVIANALASLAEID  194 (757)
T ss_pred             --HHHHHHHHHccCC--cHHHHHHHHHHHHHHHh-----cCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence              2346666666665  34567777777777653     122   13445566666666666667777776666666654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.77  E-value=0.0026  Score=46.38  Aligned_cols=54  Identities=15%  Similarity=0.106  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015496          231 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL  287 (405)
Q Consensus       231 ~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L  287 (405)
                      .+|..|+++|++++.+.+..... +....++.|..+|+++  +..+|..|+|+|++|
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence            57899999999998887776655 3457889999999876  448999999999875

...

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.66  E-value=0.044  Score=49.69  Aligned_cols=112  Identities=15%  Similarity=0.114  Sum_probs=77.7

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhcCcHHHHHHhhcCC-------CccHHHHHHHHHHHHHHh
Q 015496          217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AGQEMFYVEAGDLMLQDILGNS-------SFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~-~~~~~f~~~gGi~~L~~lL~s~-------~~~~kl~~kA~~lLs~L~  288 (405)
                      ....+++.+.+.+...  +.+..|.-.+|.++ ...+.|++.||+..|..+|..-       ..+..+...++.++..|+
T Consensus        67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~  144 (187)
T PF06371_consen   67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM  144 (187)
T ss_dssp             HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence            3445666666544322  67777877778765 4589999999999999998421       134567888999999998


Q ss_pred             hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                      .+     .......+...+++..++..|.++++.++..++..|..++
T Consensus       145 n~-----~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  145 NT-----KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SS-----HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             cc-----HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            43     2222333445699999999999999999999998888764

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.078  Score=59.66  Aligned_cols=137  Identities=18%  Similarity=0.200  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHcc-CCCCchhHHHh----cCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHH
Q 015496          148 EDSQRALQELLILV-EPIDNANDLSK----LGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL  221 (405)
Q Consensus       148 e~k~~AL~~L~~Lv-e~iDnA~~~~~----~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~L  221 (405)
                      +--.-+|.+|.+++ .+.|-|..|-.    +|.++.++.+|. +.++.++..|..++.-+..| .+|-..+...|.+..|
T Consensus      1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHH
Confidence            33345788888877 46788777654    788999999886 58899999999999888775 5588888899999999


Q ss_pred             HHhhcCCCHHHHH---HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496          222 MKMVKSSFVEEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ  291 (405)
Q Consensus       222 l~LL~s~~~~v~~---kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~  291 (405)
                      +.+|.|-. +.|.   ..+|||++    ++.....-.++||+..|..++-..+ ....|..|+.++.-|...+
T Consensus      1819 L~lLHS~P-S~R~~vL~vLYAL~S----~~~i~keA~~hg~l~yil~~~c~~~-~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1819 LTLLHSQP-SMRARVLDVLYALSS----NGQIGKEALEHGGLMYILSILCLTN-SDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred             HHHHhcCh-HHHHHHHHHHHHHhc----CcHHHHHHHhcCchhhhhHHHhccC-cHHHHHHHHHHHHHhhhcc
Confidence            99998743 3444   45666654    4666777788999998888775442 4557888999999987654

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=96.54  E-value=0.043  Score=56.94  Aligned_cols=154  Identities=13%  Similarity=0.119  Sum_probs=118.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496          134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQV  212 (405)
Q Consensus       134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v  212 (405)
                      ...+.++..+......+..+-.-|+++.- -+|...+...| +..++.+-+ ...++++...+.+|+++-....+.-+..
T Consensus       183 D~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~L  260 (832)
T KOG3678|consen  183 DLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRL  260 (832)
T ss_pred             HHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            34566666676544567888777877542 34555666666 566666554 5678999999999999999888888889


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496          213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ  291 (405)
Q Consensus       213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~-~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~  291 (405)
                      ++.|++..++--.+-.++.+-..+..||+|++-+ ....+..+++-..-+.|..+-.+.  |.-+|-.||-++.-|+.++
T Consensus       261 vaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~AClAV~vlat~K  338 (832)
T KOG3678|consen  261 VAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLHACLAVAVLATNK  338 (832)
T ss_pred             HhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHHHHHHHhhhhhhh
Confidence            9999999999888887788877888999997766 456677788888888888776664  5568999999999998764

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.51  E-value=0.046  Score=49.28  Aligned_cols=122  Identities=16%  Similarity=0.127  Sum_probs=96.1

Q ss_pred             chhHHHhcCCHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHH
Q 015496          166 NANDLSKLGGLSVLVGQLNHPD------TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKAL  237 (405)
Q Consensus       166 nA~~~~~~Ggi~~Lv~lL~s~~------~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~--~~v~~kAl  237 (405)
                      .|..|++.||++.|++.+.++.      .++...+..++-.+....--.. ..++...+.+++..++...  .++...|+
T Consensus         3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sL   81 (160)
T PF11841_consen    3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSL   81 (160)
T ss_pred             hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHH
Confidence            5889999999999999997644      4677777777777776533233 3455567888888888654  57788899


Q ss_pred             HHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       238 ~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      .-|=+++-+++.....+-+.=-++-|+..|+.+  +..+|.+|..++..|...
T Consensus        82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~--~~~iq~naiaLinAL~~k  132 (160)
T PF11841_consen   82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS--NQEIQTNAIALINALFLK  132 (160)
T ss_pred             HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHhc
Confidence            999999998887777777766788999999885  677999999999999863

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.48  E-value=0.19  Score=54.88  Aligned_cols=156  Identities=14%  Similarity=0.116  Sum_probs=109.6

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH-HHHHhcCcH
Q 015496          182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-EMFYVEAGD  260 (405)
Q Consensus       182 lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~-~~f~~~gGi  260 (405)
                      -+++++=.-|..|+.+.|.+-.+-...+-.-+..+++|.++.+..+++--++.-+.|+++.++.+.+.+. ....-..-+
T Consensus       372 ~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l  451 (859)
T KOG1241|consen  372 NIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKL  451 (859)
T ss_pred             hcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHH
Confidence            4567888889999999999998877777777778999999999997666778889999999998876543 233334556


Q ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC---CcHHHHHHhccC---CChHHHHHHHHHHHHH
Q 015496          261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR---FFLKSVVDLTAS---ADLDLQEKALAAIKNL  334 (405)
Q Consensus       261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~---g~l~~Lv~LL~~---~D~~v~E~al~aL~~L  334 (405)
                      +.++.-|.+   .+++-.+++|++.+|+..-.+...........+.   -++..|++.-..   .+..+|..+-.||..|
T Consensus       452 ~~l~~gL~D---ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmEl  528 (859)
T KOG1241|consen  452 SALLEGLND---EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMEL  528 (859)
T ss_pred             HHHHHHhhh---CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence            677776765   5789999999999998542111111000011111   234444444333   3568999999999999


Q ss_pred             hcCChh
Q 015496          335 LQLRTT  340 (405)
Q Consensus       335 ~~~~~~  340 (405)
                      ...+++
T Consensus       529 Ik~st~  534 (859)
T KOG1241|consen  529 IKNSTD  534 (859)
T ss_pred             HHcCcH
Confidence            987655

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.45  E-value=0.0069  Score=52.00  Aligned_cols=73  Identities=23%  Similarity=0.293  Sum_probs=63.9

Q ss_pred             CHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015496          175 GLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN  247 (405)
Q Consensus       175 gi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~  247 (405)
                      .+..|+++| .+.++....-||.=||..++..|..+..+-+.|+=..++.|+.+++++||..|+.|+.-++.++
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~  117 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN  117 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            467888999 5678999999999999999999999998889999999999999999999999999999887653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>TIGR02270 conserved hypothetical protein

Probab=96.37  E-value=0.43  Score=49.54  Aligned_cols=89  Identities=20%  Similarity=0.028  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      .....++..+.+.  ++..+..++..+...           ...-.++++.+|+++++.+|..|+.+||.+-.       
T Consensus       117 ~a~~~L~~~L~~~--~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-------  176 (410)
T TIGR02270       117 QAEPWLEPLLAAS--EPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR-------  176 (410)
T ss_pred             HHHHHHHHHhcCC--ChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-------
Confidence            3334444555433  344555555555441           12246789999999999999999999998764       


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015496          211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSL  243 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~l  243 (405)
                          ..++|.|...+.+.++.||..|+++++-+
T Consensus       177 ----~~a~~~L~~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       177 ----RLSESTLRLYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             ----ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence                35778899999999999999999999765

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.35  E-value=0.12  Score=56.24  Aligned_cols=144  Identities=15%  Similarity=0.164  Sum_probs=99.0

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcH-HHHHHhhcCCCHHH---HHHHHHHHHHHhc---CChhhH
Q 015496          179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL-SKLMKMVKSSFVEE---AVKALYTVSSLIR---NNLAGQ  251 (405)
Q Consensus       179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~l-p~Ll~LL~s~~~~v---~~kAl~ALS~lir---~~~~~~  251 (405)
                      ++..|+++.+.+|.+|+..++.++-=-..+++.-+ .|-+ -.|.+.|..+.+++   ..+|++||.|.+.   -.|+..
T Consensus       804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~-m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~  882 (1172)
T KOG0213|consen  804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKL-MGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIK  882 (1172)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHH-HHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChh
Confidence            34677899999999999999998852222222111 1222 23567787777776   4577777777662   234432


Q ss_pred             HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHH
Q 015496          252 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI  331 (405)
Q Consensus       252 ~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL  331 (405)
                            +.++-|..+|++.  ..|++.+..-++.-+|..     .++..+.=.=..++-.|+++|.+-+..++..|.+.+
T Consensus       883 ------dllPrltPILknr--heKVqen~IdLvg~Iadr-----gpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf  949 (1172)
T KOG0213|consen  883 ------DLLPRLTPILKNR--HEKVQENCIDLVGTIADR-----GPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF  949 (1172)
T ss_pred             ------hhcccchHhhhhh--HHHHHHHHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                  4578889999986  689999999999999964     344333221134666788888888888998888888


Q ss_pred             HHHhc
Q 015496          332 KNLLQ  336 (405)
Q Consensus       332 ~~L~~  336 (405)
                      ++++.
T Consensus       950 G~Iak  954 (1172)
T KOG0213|consen  950 GYIAK  954 (1172)
T ss_pred             hHHHH
Confidence            87764

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.30  E-value=0.14  Score=53.56  Aligned_cols=135  Identities=20%  Similarity=0.253  Sum_probs=96.9

Q ss_pred             HHHHHHHccCCCCchhHHHhcCCHHHHHHhc----------CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015496          153 ALQELLILVEPIDNANDLSKLGGLSVLVGQL----------NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM  222 (405)
Q Consensus       153 AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL----------~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll  222 (405)
                      +|+.|.-+-.+..++..+..-.|+..|+++-          ..++.++...|..||+|+.-++|..|+.+.+.|+.+.++
T Consensus         1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            3566777777777888888888888887765          346899999999999999999999999999999999999


Q ss_pred             HhhcCC-----CHHH---HHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHhhcC--------CC-------ccHHHHH
Q 015496          223 KMVKSS-----FVEE---AVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGN--------SS-------FEIRLHR  278 (405)
Q Consensus       223 ~LL~s~-----~~~v---~~kAl~ALS~lir~~~~~~~~f~-~~gGi~~L~~lL~s--------~~-------~~~kl~~  278 (405)
                      ..|+..     +.++   -.+-++-+...   .+..+..++ +++|+..|...|..        ..       .+.....
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~---~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~  157 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTAL---RPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS  157 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcC---ChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence            999876     3332   33444444433   234444444 56888888877631        00       1444566


Q ss_pred             HHHHHHHHHhhc
Q 015496          279 KAVSLVGDLAKC  290 (405)
Q Consensus       279 kA~~lLs~L~~~  290 (405)
                      .++-++.|+..+
T Consensus       158 EiLKllFNit~~  169 (446)
T PF10165_consen  158 EILKLLFNITLH  169 (446)
T ss_pred             HHHHHHHHhhhc
Confidence            778888888653

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.24  E-value=0.36  Score=48.18  Aligned_cols=195  Identities=18%  Similarity=0.134  Sum_probs=114.8

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh---cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--ChH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK---LGGLSVLVGQLNHPDTDIRKISAWILGKASQN--NPL  207 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~---~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN--N~~  207 (405)
                      ++++++.+.+..  ...|+.+|..+..++..-=. -+++.   .-.+..+.+.++.+..+-+..|+.+++-++=.  ...
T Consensus        45 L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~  121 (309)
T PF05004_consen   45 LKEAIDLLTEKS--SSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE  121 (309)
T ss_pred             HHHHHHHHHhcC--HHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence            555666665543  56788888888876643322 23332   23567778888877767788888888877532  122


Q ss_pred             hHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhc---CChhhHHHHHhcCcHH--HHHHhhcCCC--------c
Q 015496          208 VQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIR---NNLAGQEMFYVEAGDL--MLQDILGNSS--------F  272 (405)
Q Consensus       208 ~Q~~vle~G~lp~Ll~LL~s~~--~~v~~kAl~ALS~lir---~~~~~~~~f~~~gGi~--~L~~lL~s~~--------~  272 (405)
                      -...+++ ...|.|.+.+.+++  ..+|..+++||+-++-   +.+.......  ..++  ....+.+++.        .
T Consensus       122 ~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~  198 (309)
T PF05004_consen  122 DSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAED  198 (309)
T ss_pred             cHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCC
Confidence            3334443 57788999988765  3556777777775432   2222222111  1122  1112222221        1


Q ss_pred             cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          273 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       273 ~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                      +..+..-|+..-+-|+..    .++....... ...++.|+.+|.++|.+||-.|-.+|.-|....
T Consensus       199 ~~~l~~aAL~aW~lLlt~----~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~  259 (309)
T PF05004_consen  199 DAALVAAALSAWALLLTT----LPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELA  259 (309)
T ss_pred             ccHHHHHHHHHHHHHHhc----CCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            245666676666666642    2221112221 346899999999999999999999998886543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.12  E-value=0.1  Score=47.13  Aligned_cols=131  Identities=13%  Similarity=0.177  Sum_probs=96.2

Q ss_pred             HHHHHHcCcHHHHHHhhcCCCH------HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015496          209 QKQVLELGALSKLMKMVKSSFV------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  282 (405)
Q Consensus       209 Q~~vle~G~lp~Ll~LL~s~~~------~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~  282 (405)
                      ...|++.||++.|++++.++..      +.-..++.|...+.-|+--.. ..+...-+.-++.++.....+..+...+..
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            3468899999999999988763      455677888888877653332 233444456667777655457889999999


Q ss_pred             HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChh-hHHHH
Q 015496          283 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT-EALVL  345 (405)
Q Consensus       283 lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~-~~~~v  345 (405)
                      .+-+++.+     ++..-..+.++--++.|+.+|...+.++|..++..+-.|....++ .|+.+
T Consensus        83 ILEs~Vl~-----S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   83 ILESIVLN-----SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHHhC-----CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            99999853     444455666677788999999999999999999988888766554 44444

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.11  E-value=0.042  Score=58.71  Aligned_cols=83  Identities=13%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496          177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV  256 (405)
Q Consensus       177 ~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~  256 (405)
                      ..++..-+ .++..+..|+..|......-|..++.     +|..+++|..+++..+|..|+..|..+|++++.....+  
T Consensus        26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--   97 (556)
T PF05918_consen   26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--   97 (556)
T ss_dssp             HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence            33444434 57899999999999999999999986     56789999999999999999999999999998877766  


Q ss_pred             cCcHHHHHHhhcCC
Q 015496          257 EAGDLMLQDILGNS  270 (405)
Q Consensus       257 ~gGi~~L~~lL~s~  270 (405)
                         .++|.++|+++
T Consensus        98 ---aDvL~QlL~td  108 (556)
T PF05918_consen   98 ---ADVLVQLLQTD  108 (556)
T ss_dssp             ---HHHHHHHTT--
T ss_pred             ---HHHHHHHHhcc
Confidence               47999999976

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.08  E-value=0.094  Score=52.43  Aligned_cols=152  Identities=11%  Similarity=0.057  Sum_probs=114.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh--HhHHH--HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNP--LVQKQ--VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ  251 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~--~~Q~~--vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~  251 (405)
                      .|.|-.-|.+++..++..||.-+|.+..|..  .+.+.  +++.|.+|.++..+..++.++...|+-.|+.+.+ +|.+.
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaal  162 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAAL  162 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHH
Confidence            4556667788999999999999999998766  34433  4588999999999999999999999999999987 68888


Q ss_pred             HHHHhcCcHHHHHH--h-hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHH
Q 015496          252 EMFYVEAGDLMLQD--I-LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKA  327 (405)
Q Consensus       252 ~~f~~~gGi~~L~~--l-L~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~-~D~~v~E~a  327 (405)
                      +.+...+-.+.+-.  + .+.   +.-.|.++..+|-.+.+     .+++........|++..|..-|+. .|.-++-.+
T Consensus       163 eaiFeSellDdlhlrnlaakc---ndiaRvRVleLIieifS-----iSpesaneckkSGLldlLeaElkGteDtLVianc  234 (524)
T KOG4413|consen  163 EAIFESELLDDLHLRNLAAKC---NDIARVRVLELIIEIFS-----ISPESANECKKSGLLDLLEAELKGTEDTLVIANC  234 (524)
T ss_pred             HHhcccccCChHHHhHHHhhh---hhHHHHHHHHHHHHHHh-----cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhH
Confidence            88877665554332  2 232   23367788888888764     455556667778888887776665 577777788


Q ss_pred             HHHHHHHhc
Q 015496          328 LAAIKNLLQ  336 (405)
Q Consensus       328 l~aL~~L~~  336 (405)
                      +..+..|+.
T Consensus       235 iElvteLae  243 (524)
T KOG4413|consen  235 IELVTELAE  243 (524)
T ss_pred             HHHHHHHHH
Confidence            877777775

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.04  E-value=0.13  Score=55.47  Aligned_cols=158  Identities=15%  Similarity=0.093  Sum_probs=113.0

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH-HHH---cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ-VLE---LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG  250 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~-vle---~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~  250 (405)
                      ++|.|..+|.+++....+.|..+|..++...+..-+. +..   .-.+|++++..+++++.+|.-|+.++-..+-....+
T Consensus       129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa  208 (885)
T KOG2023|consen  129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA  208 (885)
T ss_pred             HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence            4566778889999999999999999999875543322 111   136899999999999999999999998866554432


Q ss_pred             ----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHH
Q 015496          251 ----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK  326 (405)
Q Consensus       251 ----~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~  326 (405)
                          .+.|     ++.|..+-.+  .++.+|+..|..+..|..-.   ++ ...+.+  .+++..+.......|..+--.
T Consensus       209 l~~~iD~F-----le~lFalanD--~~~eVRk~vC~alv~Llevr---~d-kl~phl--~~IveyML~~tqd~dE~VALE  275 (885)
T KOG2023|consen  209 LYVHIDKF-----LEILFALAND--EDPEVRKNVCRALVFLLEVR---PD-KLVPHL--DNIVEYMLQRTQDVDENVALE  275 (885)
T ss_pred             HHHHHHHH-----HHHHHHHccC--CCHHHHHHHHHHHHHHHHhc---HH-hcccch--HHHHHHHHHHccCcchhHHHH
Confidence                2333     3444444444  37789999999999998531   11 111122  378888888888888888888


Q ss_pred             HHHHHHHHhcCChhhHHHHH
Q 015496          327 ALAAIKNLLQLRTTEALVLK  346 (405)
Q Consensus       327 al~aL~~L~~~~~~~~~~v~  346 (405)
                      |+.....++..+ .++.++.
T Consensus       276 ACEFwla~aeqp-i~~~~L~  294 (885)
T KOG2023|consen  276 ACEFWLALAEQP-ICKEVLQ  294 (885)
T ss_pred             HHHHHHHHhcCc-CcHHHHH
Confidence            999999999875 5666654

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.02  E-value=0.26  Score=54.46  Aligned_cols=160  Identities=14%  Similarity=0.179  Sum_probs=107.7

Q ss_pred             HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015496          112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI  190 (405)
Q Consensus       112 ~r~~~L~~a~~~~~-~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~I  190 (405)
                      +|.+-+|..+..|. |.+-..+.-..++...  +.+.|.|.-.---++.+.+. +.  +..-+ .+..+.+=|.++|+.|
T Consensus        35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~--trd~ElKrL~ylYl~~yak~-~P--~~~lL-avNti~kDl~d~N~~i  108 (757)
T COG5096          35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA--TRDVELKRLLYLYLERYAKL-KP--ELALL-AVNTIQKDLQDPNEEI  108 (757)
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhcc-CH--HHHHH-HHHHHHhhccCCCHHH
Confidence            46677777777764 5553444444444333  23556554443333333222 11  22111 4667777888999999


Q ss_pred             HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496          191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS  270 (405)
Q Consensus       191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~  270 (405)
                      |..|.+.++.+=-  ++     +-...++++.+++.++++-||..|+.||..+-+-.+   +.+.+.|-+..+..++.+.
T Consensus       109 R~~AlR~ls~l~~--~e-----l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~  178 (757)
T COG5096         109 RGFALRTLSLLRV--KE-----LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADS  178 (757)
T ss_pred             HHHHHHHHHhcCh--HH-----HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCC
Confidence            9999999998642  21     223578999999999999999999999999976443   4666777788888888765


Q ss_pred             CccHHHHHHHHHHHHHHhh
Q 015496          271 SFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       271 ~~~~kl~~kA~~lLs~L~~  289 (405)
                        ++.+.+.|+..+..+..
T Consensus       179 --dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         179 --DPIVIANALASLAEIDP  195 (757)
T ss_pred             --CchHHHHHHHHHHHhch
Confidence              67788999888888764

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.90  E-value=0.49  Score=49.60  Aligned_cols=195  Identities=18%  Similarity=0.124  Sum_probs=136.8

Q ss_pred             HhHHHHHHHHHHcC--C--CCHHHHHHHHHHHhhcCCCC----HHHHH-HHHHHHHHccCCCCchhHHHhcCCHHHHHHh
Q 015496          112 KRQMEIKELMEKLK--T--PSDAQLIQIAIDDLNNSTLS----LEDSQ-RALQELLILVEPIDNANDLSKLGGLSVLVGQ  182 (405)
Q Consensus       112 ~r~~~L~~a~~~~~--~--~~d~~lmk~al~~L~~~~~t----~e~k~-~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~l  182 (405)
                      +|+++-.+-|+.-+  .  +...+.+|+-++.+...-.+    .++.+ .|+--|.++.+++..--.+..-..+..||+.
T Consensus       233 kRye~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKa  312 (791)
T KOG1222|consen  233 KRYEFWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKA  312 (791)
T ss_pred             HHHHHHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHH
Confidence            58877776665432  1  11234455544444332111    13333 4566677888888877788888899999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496          183 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  262 (405)
Q Consensus       183 L~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~  262 (405)
                      |..++.++-......|-.++- -.+....+.+.|.+.+|++++...++.++...+.-+=|+.-+ ...+...+..|-+|.
T Consensus       313 Ldr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~  390 (791)
T KOG1222|consen  313 LDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPH  390 (791)
T ss_pred             HcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHH
Confidence            998888888888777776664 234566677889999999999999988887777777776544 345777888899999


Q ss_pred             HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC
Q 015496          263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS  318 (405)
Q Consensus       263 L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~  318 (405)
                      |..+|.+++.    .--|+..++++.      .+...+..|....+++.+.+.+-+
T Consensus       391 l~~ll~~d~~----~~iA~~~lYh~S------~dD~~K~MfayTdci~~lmk~v~~  436 (791)
T KOG1222|consen  391 LASLLDSDTK----HGIALNMLYHLS------CDDDAKAMFAYTDCIKLLMKDVLS  436 (791)
T ss_pred             HHHHhCCccc----chhhhhhhhhhc------cCcHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998631    223666777765      356777788888899988876544

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=95.85  E-value=0.11  Score=51.55  Aligned_cols=32  Identities=19%  Similarity=0.204  Sum_probs=23.9

Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      ...++.+..++...+.+++..+..+|..+...
T Consensus       179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~  210 (335)
T COG1413         179 PEAIPLLIELLEDEDADVRRAAASALGQLGSE  210 (335)
T ss_pred             hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence            34566677777777778888888888888765

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.80  E-value=0.22  Score=54.71  Aligned_cols=199  Identities=20%  Similarity=0.236  Sum_probs=115.2

Q ss_pred             hHHHHHHHH--HHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015496          113 RQMEIKELM--EKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI  190 (405)
Q Consensus       113 r~~~L~~a~--~~~~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~I  190 (405)
                      |++-+.++|  .-+|-|...-.| +|++.+.++... |-|+.=|-...-|=|.-|    ++-+ ..-.|.+=|+|++--+
T Consensus        51 r~rniaKLlYi~MLGypahFGqi-eclKLias~~f~-dKRiGYLaamLlLdE~qd----vllL-ltNslknDL~s~nq~v  123 (866)
T KOG1062|consen   51 RHRNIAKLLYIHMLGYPAHFGQI-ECLKLIASDNFL-DKRIGYLAAMLLLDERQD----LLLL-LTNSLKNDLNSSNQYV  123 (866)
T ss_pred             HHHHHHHHHHHHHhCCCccchhh-HHHHHhcCCCch-HHHHHHHHHHHHhccchH----HHHH-HHHHHHhhccCCCeee
Confidence            444444432  223444444333 466666665543 445444444444433333    2211 1123345567889999


Q ss_pred             HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496          191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS  270 (405)
Q Consensus       191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~  270 (405)
                      ...|.-+||+++.  |+.-..     ..|-+-+++++.++-+|+||+-|.-.++|-.|...+.|+     ..-..+|.+.
T Consensus       124 VglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~-----~~~~~lL~ek  191 (866)
T KOG1062|consen  124 VGLALCALGNICS--PEMARD-----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFV-----IAFRKLLCEK  191 (866)
T ss_pred             hHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhh-----HHHHHHHhhc
Confidence            9999999999994  554443     458888999998999999999999999999998888875     2333444433


Q ss_pred             CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC---------------CChHHHHHHHHHHHHHh
Q 015496          271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLL  335 (405)
Q Consensus       271 ~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~---------------~D~~v~E~al~aL~~L~  335 (405)
                        +..+..-++.++..+|.     .+++....+.+  +++.+|..|+.               .|+-+|-+.++.|.-|-
T Consensus       192 --~hGVL~~~l~l~~e~c~-----~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG  262 (866)
T KOG1062|consen  192 --HHGVLIAGLHLITELCK-----ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG  262 (866)
T ss_pred             --CCceeeeHHHHHHHHHh-----cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence              23344455556666664     23344444443  33333333321               24556666666665555


Q ss_pred             cCCh
Q 015496          336 QLRT  339 (405)
Q Consensus       336 ~~~~  339 (405)
                      ++..
T Consensus       263 q~d~  266 (866)
T KOG1062|consen  263 QNDA  266 (866)
T ss_pred             CCCc
Confidence            5433

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.76  E-value=0.015  Score=37.60  Aligned_cols=29  Identities=31%  Similarity=0.573  Sum_probs=25.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQN  204 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN  204 (405)
                      +|.+++++++++++||..|+++|+.+++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            68899999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.72  E-value=0.17  Score=54.25  Aligned_cols=146  Identities=18%  Similarity=0.157  Sum_probs=96.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh--HHHHHHcCcHHHHHHhhcCCCHHHH---HHHHHHHHHHhcCC---
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV--QKQVLELGALSKLMKMVKSSFVEEA---VKALYTVSSLIRNN---  247 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~--Q~~vle~G~lp~Ll~LL~s~~~~v~---~kAl~ALS~lir~~---  247 (405)
                      +..++.+|+|+.|.+|.+|+..+|.++.==..|  .+.+.+.|.  .|.+.|..+.+++-   .+|+++|-+..|-.   
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq  683 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ  683 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence            344567889999999999999999887410001  111112222  35566666667664   46666666655432   


Q ss_pred             hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHH
Q 015496          248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKA  327 (405)
Q Consensus       248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~a  327 (405)
                      ||.      .|.++.|..+|++.  ..|+..+...++.-+|..     .|+....=.=..++-.|+++|.+-+..++..|
T Consensus       684 pPi------~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~-----~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A  750 (975)
T COG5181         684 PPI------SGILPSLTPILRNK--HQKVVANTIALVGTICMN-----SPEYIGVREWMRICFELVDSLKSWNKEIRRNA  750 (975)
T ss_pred             Cch------hhccccccHhhhhh--hHHHhhhHHHHHHHHHhc-----CcccCCHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence            221      36678899999987  678999999999999974     33333221112466678888888888888888


Q ss_pred             HHHHHHHhc
Q 015496          328 LAAIKNLLQ  336 (405)
Q Consensus       328 l~aL~~L~~  336 (405)
                      ...++.++.
T Consensus       751 ~~tfG~Is~  759 (975)
T COG5181         751 TETFGCISR  759 (975)
T ss_pred             hhhhhhHHh
Confidence            877777654

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=95.68  E-value=0.65  Score=47.58  Aligned_cols=177  Identities=15%  Similarity=0.079  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496          147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  224 (405)
Q Consensus       147 ~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L  224 (405)
                      .+.+..++..+++++.+.+.-..+.+.+.=-.++..|.  +.+..=|.+|...+..+..-....+  -+-.|.+..++.+
T Consensus        39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai  116 (371)
T PF14664_consen   39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI  116 (371)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence            68888999999999999999999999986666677775  3456678899999988875311111  1245788999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496          225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  304 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~  304 (405)
                      ..+.++..+.-|+-.|+-++-.+|.   .+..+||+..|.+.+.++  ...+....+.++-++..      .|..+..+.
T Consensus       117 ae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~--~~~~~~~l~~~lL~lLd------~p~tR~yl~  185 (371)
T PF14664_consen  117 AEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDG--SFSISESLLDTLLYLLD------SPRTRKYLR  185 (371)
T ss_pred             HhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhc--cHhHHHHHHHHHHHHhC------Ccchhhhhc
Confidence            9998889999999999999988875   677899999999999875  33467778888888874      455555555


Q ss_pred             hCCcHHHHHHhccC-------CCh--HHHHHHHHHHHHHhc
Q 015496          305 DRFFLKSVVDLTAS-------ADL--DLQEKALAAIKNLLQ  336 (405)
Q Consensus       305 ~~g~l~~Lv~LL~~-------~D~--~v~E~al~aL~~L~~  336 (405)
                      ..--+..+..-...       ++.  +....+..++..+..
T Consensus       186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr  226 (371)
T PF14664_consen  186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR  226 (371)
T ss_pred             CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh
Confidence            43334444433222       122  345566666666654

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.56  E-value=0.12  Score=56.35  Aligned_cols=143  Identities=19%  Similarity=0.166  Sum_probs=114.5

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496          174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM  253 (405)
Q Consensus       174 Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~  253 (405)
                      +.++.++++....+-+++...---+.+-++..|..+.     ++++.+++=..++++.+|..|+..++++ |- +.....
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~d~np~iR~lAlrtm~~l-~v-~~i~ey  121 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCEDPNPLIRALALRTMGCL-RV-DKITEY  121 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCCCCCHHHHHHHhhceeeE-ee-hHHHHH
Confidence            3578889999888899999999999999999986654     6778888888888889999999999876 33 222222


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496          254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN  333 (405)
Q Consensus       254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~  333 (405)
                           ...+|..+++++  +..+|+.++..+..+-.     .+   .+.+.+.|++..|-+++...|+.+...|+.+|..
T Consensus       122 -----~~~Pl~~~l~d~--~~yvRktaa~~vakl~~-----~~---~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~e  186 (734)
T KOG1061|consen  122 -----LCDPLLKCLKDD--DPYVRKTAAVCVAKLFD-----ID---PDLVEDSGLVDALKDLLSDSNPMVVANALAALSE  186 (734)
T ss_pred             -----HHHHHHHhccCC--ChhHHHHHHHHHHHhhc-----CC---hhhccccchhHHHHHHhcCCCchHHHHHHHHHHH
Confidence                 357899999986  56688888888887752     22   3356778999999999998899999999999999


Q ss_pred             HhcCC
Q 015496          334 LLQLR  338 (405)
Q Consensus       334 L~~~~  338 (405)
                      +....
T Consensus       187 I~e~~  191 (734)
T KOG1061|consen  187 IHESH  191 (734)
T ss_pred             HHHhC
Confidence            98654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.51  E-value=0.066  Score=44.33  Aligned_cols=66  Identities=15%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLI  244 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~--G~lp~Ll~LL~s~~~~v~~kAl~ALS~li  244 (405)
                      .++|++.++..++..||..||.+|.+++..   .+..++.+  ..++.|.+++.++++.||..| .-|-+++
T Consensus        28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll   95 (97)
T PF12755_consen   28 ILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL   95 (97)
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence            589999999999999999999999999964   45556543  677888888888888877644 4455444

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=95.38  E-value=0.56  Score=48.53  Aligned_cols=110  Identities=15%  Similarity=0.107  Sum_probs=82.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh-------------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-------------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS  242 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~-------------Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~  242 (405)
                      +..|+.+|.+  +++...||..++-+....+.+             ++.+. .-.+|.|++-.++.+.+.+...+.|||.
T Consensus       273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~  349 (415)
T PF12460_consen  273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSH  349 (415)
T ss_pred             HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence            5567777766  888999999999999874444             22222 2478999999988777788899999999


Q ss_pred             HhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          243 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       243 lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      ++++-|...-.=.-..-+|+|++.|..+  +..++.-+..++..+..+
T Consensus       350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  350 LLKNVPKSVLLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMILEE  395 (415)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHc
Confidence            9998775422111234788999999876  556888999999999863

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.36  E-value=0.078  Score=41.65  Aligned_cols=65  Identities=17%  Similarity=0.277  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015496          191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVE  257 (405)
Q Consensus       191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~  257 (405)
                      ...|.|++|++++. +.-...+.+.+.++.++++..+.+ ..+|--|.|+|+-+.+ ...+.+.+.+.
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~   69 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDEL   69 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHc
Confidence            46899999999984 556666667899999999998655 5899999999997765 45555544443

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=95.35  E-value=0.27  Score=45.94  Aligned_cols=132  Identities=14%  Similarity=0.029  Sum_probs=83.1

Q ss_pred             HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH
Q 015496          151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV  230 (405)
Q Consensus       151 ~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~  230 (405)
                      ..|+.-+..++......-.-.--..+|+|+..+.++..-|+..|..+|.+++++.+.....     .++.+.....+.++
T Consensus        71 ~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~  145 (228)
T PF12348_consen   71 KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNP  145 (228)
T ss_dssp             HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-H
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCH
Confidence            3566666666655543322222235888999999999999999999999999986622221     14666777788889


Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHHh----cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          231 EEAVKALYTVSSLIRNNLAGQEMFYV----EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       231 ~v~~kAl~ALS~lir~~~~~~~~f~~----~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      .+|..++-.+..++...+.....+-.    ..-++.+..++.+.  +..+|..|-.++..+..
T Consensus       146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPEVREAARECLWALYS  206 (228)
T ss_dssp             HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHH
Confidence            99999999999988877621111111    23456777778876  67788888888887764

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.25  E-value=0.34  Score=53.06  Aligned_cols=153  Identities=12%  Similarity=0.050  Sum_probs=105.2

Q ss_pred             CCHHHHHHhcCC--CC-----HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015496          174 GGLSVLVGQLNH--PD-----TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN  246 (405)
Q Consensus       174 Ggi~~Lv~lL~s--~~-----~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~  246 (405)
                      +.+|.|+++|..  ++     =.+-..|..||.-.+|.   +.+.++. -++|.+=+-+++++=.-|..|+.|.+++.-+
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g  394 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEG  394 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence            456778888853  11     23666777788877775   4444544 3445444567777767789999999999987


Q ss_pred             ChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHH
Q 015496          247 NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK  326 (405)
Q Consensus       247 ~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~  326 (405)
                      -.+.+..-+-.++++.++.++.++  ..-++.-++|.++-++..-    .........-...++.++.-|+ +.+.+-.+
T Consensus       395 p~~~~Lt~iV~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~l----~e~~~n~~~l~~~l~~l~~gL~-DePrva~N  467 (859)
T KOG1241|consen  395 PEPDKLTPIVIQALPSIINLMSDP--SLWVKDTAAWTLGRIADFL----PEAIINQELLQSKLSALLEGLN-DEPRVASN  467 (859)
T ss_pred             CchhhhhHHHhhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhhc----hhhcccHhhhhHHHHHHHHHhh-hCchHHHH
Confidence            666666667789999999999965  5667889999999999642    1111222222344444544443 46789999


Q ss_pred             HHHHHHHHhcC
Q 015496          327 ALAAIKNLLQL  337 (405)
Q Consensus       327 al~aL~~L~~~  337 (405)
                      ++|++.+|++.
T Consensus       468 ~CWAf~~Laea  478 (859)
T KOG1241|consen  468 VCWAFISLAEA  478 (859)
T ss_pred             HHHHHHHHHHH
Confidence            99999999954

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=95.24  E-value=0.67  Score=49.56  Aligned_cols=173  Identities=16%  Similarity=0.142  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CChHhHHHHHHcCcHHHHHHhh
Q 015496          148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq--NN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      ..|..+++-+.-+.+..+-.-.+.--..+|.+.+-|..+.+++|..+-.+|..++.  .||+.|.      .+|.|++.+
T Consensus       269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l  342 (569)
T KOG1242|consen  269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDAL  342 (569)
T ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHh
Confidence            35677777777666656555566666789999999999999999999999988876  6787776      469999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhchhccCCCCcchhH
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF  303 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~--~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l  303 (405)
                      .+++..+. +++..|+.-.-  -    .+++.--+.+++.+|+.+  ..+..++++++-.+-|+|.--   .++.....+
T Consensus       343 ~dp~~~~~-e~~~~L~~ttF--V----~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv---eDp~~lapf  412 (569)
T KOG1242|consen  343 ADPSCYTP-ECLDSLGATTF--V----AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV---EDPKDLAPF  412 (569)
T ss_pred             cCcccchH-HHHHhhcceee--e----eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh---cCHHHHhhh
Confidence            88763322 24444443211  0    122233445555555422  013456899999999999631   222211111


Q ss_pred             HhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          304 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       304 ~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      . ..++|.+=..+...++++|+.+.+||+.+...
T Consensus       413 l-~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~  445 (569)
T KOG1242|consen  413 L-PSLLPGLKENLDDAVPEVRAVAARALGALLER  445 (569)
T ss_pred             H-HHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence            1 12444454555556899999999999888753

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.22  E-value=1.3  Score=47.27  Aligned_cols=105  Identities=16%  Similarity=0.081  Sum_probs=82.2

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  254 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f  254 (405)
                      .+..+.++|.++..+-|..+..-|..+-.+.| .|-.+.....++.|++-|++.++++..+++.-++++|.+...-    
T Consensus       337 ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~----  411 (675)
T KOG0212|consen  337 IIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP----  411 (675)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc----
Confidence            36677889999999999999999998887655 6666777789999999999999999999999999999874331    


Q ss_pred             HhcCcHHHHHHhh---cCCCccHHHHHHHHHHHHHHhh
Q 015496          255 YVEAGDLMLQDIL---GNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       255 ~~~gGi~~L~~lL---~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                         |-.+.+..+|   +.+  ..-+..++.+.+..||.
T Consensus       412 ---~~~~fl~sLL~~f~e~--~~~l~~Rg~lIIRqlC~  444 (675)
T KOG0212|consen  412 ---NLRKFLLSLLEMFKED--TKLLEVRGNLIIRQLCL  444 (675)
T ss_pred             ---cHHHHHHHHHHHHhhh--hHHHHhhhhHHHHHHHH
Confidence               2234444443   443  34578889999999995

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.12  E-value=0.58  Score=52.45  Aligned_cols=176  Identities=19%  Similarity=0.152  Sum_probs=101.5

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCH-HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL-SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ  209 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi-~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q  209 (405)
                      .+..+.+..+.++..+..-|.-|+-.|-++=...    +.....++ ..+++.+++++++++..|+.+||+++.+|-   
T Consensus       817 s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~----~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl---  889 (1233)
T KOG1824|consen  817 SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRK----DLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNL---  889 (1233)
T ss_pred             hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCC----CCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCch---
Confidence            3445555666666666677778877777653333    22233333 366789999999999999999999999764   


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHH--hcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496          210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGD  286 (405)
Q Consensus       210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~-~~~~~~~f~--~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~  286 (405)
                           ...+|.+++.+.+.... +.--+.++=-.+.. ...   .|.  -...|.+|.+-..+.  ....|.-.+-++.-
T Consensus       890 -----~~yLpfil~qi~sqpk~-QyLLLhSlkevi~~~svd---~~~~~v~~IW~lL~k~cE~~--eegtR~vvAECLGk  958 (1233)
T KOG1824|consen  890 -----PKYLPFILEQIESQPKR-QYLLLHSLKEVIVSASVD---GLKPYVEKIWALLFKHCECA--EEGTRNVVAECLGK  958 (1233)
T ss_pred             -----HhHHHHHHHHHhcchHh-HHHHHHHHHHHHHHhccc---hhhhhHHHHHHHHHHhcccc--hhhhHHHHHHHhhh
Confidence                 24678888887764321 22222222222211 111   111  123455555444432  33446666666776


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      |+-.     +|        ..++|.|-..+.++++..+-.++.++......
T Consensus       959 L~l~-----ep--------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd  996 (1233)
T KOG1824|consen  959 LVLI-----EP--------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISD  996 (1233)
T ss_pred             HHhC-----Ch--------HHHHHHHHHHhcCCCcchhhhhhheeeeeecC
Confidence            6632     22        34566666666666666666666666655543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=95.01  E-value=1.2  Score=44.03  Aligned_cols=124  Identities=20%  Similarity=0.260  Sum_probs=91.7

Q ss_pred             CHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH------------HHHHHHHHHHH
Q 015496          175 GLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV------------EEAVKALYTVS  241 (405)
Q Consensus       175 gi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~------------~v~~kAl~ALS  241 (405)
                      .+++++.+|. +++..+|..|+++|+.+-.-           .++.+|+.++.++..            .++..++.+++
T Consensus       106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~  174 (335)
T COG1413         106 AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG  174 (335)
T ss_pred             HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence            5889999998 69999999999999987753           347888888887551            34556666666


Q ss_pred             HHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCCh
Q 015496          242 SLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL  321 (405)
Q Consensus       242 ~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~  321 (405)
                      .+-  .+         ..++.|...+.+.  +..+|..|+..+..+..+     +         ..+...+...+..++.
T Consensus       175 ~~~--~~---------~~~~~l~~~l~~~--~~~vr~~Aa~aL~~~~~~-----~---------~~~~~~l~~~~~~~~~  227 (335)
T COG1413         175 ELG--DP---------EAIPLLIELLEDE--DADVRRAAASALGQLGSE-----N---------VEAADLLVKALSDESL  227 (335)
T ss_pred             HcC--Ch---------hhhHHHHHHHhCc--hHHHHHHHHHHHHHhhcc-----h---------hhHHHHHHHHhcCCCH
Confidence            551  22         3567888888876  346888999888887632     1         3566778888888888


Q ss_pred             HHHHHHHHHHHHHhc
Q 015496          322 DLQEKALAAIKNLLQ  336 (405)
Q Consensus       322 ~v~E~al~aL~~L~~  336 (405)
                      .++..++.+|+.+-.
T Consensus       228 ~vr~~~~~~l~~~~~  242 (335)
T COG1413         228 EVRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHHHHhcccCc
Confidence            999888888777654

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.96  E-value=0.047  Score=35.25  Aligned_cols=29  Identities=14%  Similarity=0.190  Sum_probs=26.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015496          218 LSKLMKMVKSSFVEEAVKALYTVSSLIRN  246 (405)
Q Consensus       218 lp~Ll~LL~s~~~~v~~kAl~ALS~lir~  246 (405)
                      +|.++++++++++.||..|+++|+.++++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            79999999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.89  E-value=1.3  Score=49.93  Aligned_cols=153  Identities=15%  Similarity=0.123  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh
Q 015496          188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL  267 (405)
Q Consensus       188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL  267 (405)
                      ..++..++.+++...++-...--. ...+.+..++--+.+.-..+|+||+++||.++-..+  ...|.  +.++.|.+-|
T Consensus       147 sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~--~~ly~--~li~~Ll~~L  221 (1233)
T KOG1824|consen  147 SAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN--RDLYV--ELIEHLLKGL  221 (1233)
T ss_pred             hhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC--HHHHH--HHHHHHHhcc
Confidence            447777777777776652222111 223445555555666667899999999999876533  22222  3456666666


Q ss_pred             cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh--CCcHHHHHHhc---cCCChHHHHHHHHHHHHHhcCChhhH
Q 015496          268 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD--RFFLKSVVDLT---ASADLDLQEKALAAIKNLLQLRTTEA  342 (405)
Q Consensus       268 ~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~--~g~l~~Lv~LL---~~~D~~v~E~al~aL~~L~~~~~~~~  342 (405)
                      ... +.....+--..+|..+|+..    ..    .+-.  ..+++.+++..   ..+|.+++|.++.++..++..   |+
T Consensus       222 ~~~-~q~~~~rt~Iq~l~~i~r~a----g~----r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r---cp  289 (1233)
T KOG1824|consen  222 SNR-TQMSATRTYIQCLAAICRQA----GH----RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR---CP  289 (1233)
T ss_pred             CCC-CchHHHHHHHHHHHHHHHHh----cc----hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh---Ch
Confidence            654 23334445667788888752    21    2222  35677777777   677999999999999998854   44


Q ss_pred             HHHHhcCCchHHHHHHH
Q 015496          343 LVLKDFCGLDTALERLR  359 (405)
Q Consensus       343 ~~v~~~~Gl~~~L~~L~  359 (405)
                      +.+.  .-.+..+..+.
T Consensus       290 ~ei~--p~~pei~~l~l  304 (1233)
T KOG1824|consen  290 KEIL--PHVPEIINLCL  304 (1233)
T ss_pred             hhhc--ccchHHHHHHH
Confidence            4443  22334444444

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.71  E-value=0.35  Score=47.02  Aligned_cols=100  Identities=18%  Similarity=0.085  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc
Q 015496          149 DSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK  226 (405)
Q Consensus       149 ~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~  226 (405)
                      ....||+.|+-++- ..+...-|...+++..|+.+|+ +..+.++..+..+|-.+.-.+|.++..|-+.+|+..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            45668899988663 4567778899999999999995 567999999999999999999999999999999999999999


Q ss_pred             CCC--HHHHHHHHHHHHHHhcCCh
Q 015496          227 SSF--VEEAVKALYTVSSLIRNNL  248 (405)
Q Consensus       227 s~~--~~v~~kAl~ALS~lir~~~  248 (405)
                      +.+  .+++.|.+--|--.+..-.
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl~~E~  210 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYLMPET  210 (257)
T ss_pred             cccccHHHhHHHHHHHHHHHcccC
Confidence            865  4677777666655554433

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.70  E-value=0.16  Score=46.03  Aligned_cols=92  Identities=23%  Similarity=0.298  Sum_probs=69.6

Q ss_pred             HHHHHHHHcc--CCCCchhHHHhcCCHHHHHHhcCC---------CCHHHHHHHHHHHHHHhcCChHhHHHHHH-cCcHH
Q 015496          152 RALQELLILV--EPIDNANDLSKLGGLSVLVGQLNH---------PDTDIRKISAWILGKASQNNPLVQKQVLE-LGALS  219 (405)
Q Consensus       152 ~AL~~L~~Lv--e~iDnA~~~~~~Ggi~~Lv~lL~s---------~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle-~G~lp  219 (405)
                      ..+..|+..+  .+++....|+..||+..|+.+|..         .+..+...+..||-.+. |++.....+++ .+++.
T Consensus        83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n~~~G~~~v~~~~~~v~  161 (187)
T PF06371_consen   83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-NTKYGLEAVLSHPDSVN  161 (187)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-SSHHHHHHHHCSSSHHH
T ss_pred             HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-ccHHHHHHHHcCcHHHH
Confidence            3444444433  456788999999999999988852         34578999999998888 66777777776 58999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHh
Q 015496          220 KLMKMVKSSFVEEAVKALYTVSSLI  244 (405)
Q Consensus       220 ~Ll~LL~s~~~~v~~kAl~ALS~li  244 (405)
                      .|+..|.+++..++..++.-|+.+|
T Consensus       162 ~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  162 LIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999988888775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.69  E-value=0.99  Score=44.90  Aligned_cols=188  Identities=19%  Similarity=0.140  Sum_probs=108.7

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH
Q 015496          136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL  213 (405)
Q Consensus       136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~--~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vl  213 (405)
                      ..+.+.+.  ++..+..|.+++..+.-.  .-..+.+  .-.++.+.+++....+  -..|+.++.|++|+ +..++.++
T Consensus         8 lv~ll~~~--sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll   80 (353)
T KOG2973|consen    8 LVELLHSL--SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL   80 (353)
T ss_pred             HHHHhccC--ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence            34455444  457777888888877644  1112221  1245667777776555  66899999999995 88999998


Q ss_pred             HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-----CcHHHHHHhhcCCCcc--HHHHHHHHHHHHH
Q 015496          214 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-----AGDLMLQDILGNSSFE--IRLHRKAVSLVGD  286 (405)
Q Consensus       214 e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~-----gGi~~L~~lL~s~~~~--~kl~~kA~~lLs~  286 (405)
                      .. .+..++.++.++......-.+-.|+|+.|............     .|+.-+...+-+++.+  .. -...+..+.|
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~-f~ylA~vf~n  158 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAE-FHYLAPVFAN  158 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccc-hhHHHHHHHH
Confidence            88 88888888888766666778888999998865544433321     3544444444322122  11 1235667777


Q ss_pred             HhhchhccCCCCcchhHHhCC--cHHHHHHhccCCChHHH-HHHHHHHHHHhcCCh
Q 015496          287 LAKCQLENMHKVEPPLFRDRF--FLKSVVDLTASADLDLQ-EKALAAIKNLLQLRT  339 (405)
Q Consensus       287 L~~~~~~~~~~~~~~~l~~~g--~l~~Lv~LL~~~D~~v~-E~al~aL~~L~~~~~  339 (405)
                      |.+.      +.-+..+.+..  ..+.+.. +.+.|..+| .-++..|.|.+-...
T Consensus       159 ls~~------~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~  207 (353)
T KOG2973|consen  159 LSQF------EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAK  207 (353)
T ss_pred             Hhhh------hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccch
Confidence            7653      22333343332  2222222 233444444 344555566554433

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.60  E-value=4.6  Score=44.81  Aligned_cols=182  Identities=16%  Similarity=0.122  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHhcCCH---------------HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496          148 EDSQRALQELLILVEPIDNANDLSKLGGL---------------SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV  212 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi---------------~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v  212 (405)
                      .-++.|...|..++-+-||=-..+.+.++               ..++.||+.+++.||..|...+..++-. ..++.  
T Consensus       309 ~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~--  385 (866)
T KOG1062|consen  309 GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVRV--  385 (866)
T ss_pred             hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHH--
Confidence            34555666666665555542222222222               3567899999999999999999988842 22332  


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH--------------hcCcHHHHHHhhcCC--------
Q 015496          213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--------------VEAGDLMLQDILGNS--------  270 (405)
Q Consensus       213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~--------------~~gGi~~L~~lL~s~--------  270 (405)
                          .+..|+..|.+.++..+....+-|.-++.-+.|....|+              ....+.-++.++.+.        
T Consensus       386 ----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~  461 (866)
T KOG1062|consen  386 ----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA  461 (866)
T ss_pred             ----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence                356788888887778888888888877777655433332              112344455554432        


Q ss_pred             ---------------CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHH
Q 015496          271 ---------------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKN  333 (405)
Q Consensus       271 ---------------~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~al~aL~~  333 (405)
                                     -....+..-+.|+|.---.--+...+.+....+.+..++..+-+++.+.  +..++..++.||..
T Consensus       462 ~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~K  541 (866)
T KOG1062|consen  462 VLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLK  541 (866)
T ss_pred             HHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence                           1233455566676654321000011122222344456777777777654  67777888888877


Q ss_pred             Hhc
Q 015496          334 LLQ  336 (405)
Q Consensus       334 L~~  336 (405)
                      |..
T Consensus       542 LSs  544 (866)
T KOG1062|consen  542 LSS  544 (866)
T ss_pred             HHh
Confidence            764

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.57  E-value=0.77  Score=50.17  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=29.4

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPL  207 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~  207 (405)
                      .+|.|+.=|..++|.|+..|..+|+.+|.-||+
T Consensus       182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPk  214 (877)
T KOG1059|consen  182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ  214 (877)
T ss_pred             hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence            478888888999999999999999999998883

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.53  E-value=1.4  Score=40.14  Aligned_cols=90  Identities=21%  Similarity=0.213  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc--HHHHH
Q 015496          187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQ  264 (405)
Q Consensus       187 ~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG--i~~L~  264 (405)
                      ++.||..+.-++|-++..-|..-+     ..+|.+...|+++++.+|..|+..|+.++.+.      +++..|  +..+.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d------~ik~k~~l~~~~l   69 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED------MIKVKGQLFSRIL   69 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC------ceeehhhhhHHHH
Confidence            578999999999999987765444     45799999999999999999999999998763      222222  25666


Q ss_pred             HhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          265 DILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       265 ~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      .++.++  +..++.-|..++..+..
T Consensus        70 ~~l~D~--~~~Ir~~A~~~~~e~~~   92 (178)
T PF12717_consen   70 KLLVDE--NPEIRSLARSFFSELLK   92 (178)
T ss_pred             HHHcCC--CHHHHHHHHHHHHHHHH
Confidence            677665  67899999999999985

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.51  E-value=4.5  Score=41.87  Aligned_cols=192  Identities=20%  Similarity=0.227  Sum_probs=115.4

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHH-----HH
Q 015496          127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWIL-----GK  200 (405)
Q Consensus       127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~L-----g~  200 (405)
                      |+..+++...++...+.. ++..+..+++.+.-++........+.+  .+..+..-+ ....++.+..+..++     |-
T Consensus       185 ~~~~~ll~~l~~~~~~~~-~~~~~~~~~~~la~LvNK~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL  261 (415)
T PF12460_consen  185 PDLEELLQSLLNLALSSE-DEFSRLAALQLLASLVNKWPDDDDLDE--FLDSLLQSISSSEDSELRPQALEILIWITKAL  261 (415)
T ss_pred             cCHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCChhhHHH--HHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence            444567777777766654 356777788877777755433222221  123333322 233444444444444     33


Q ss_pred             HhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh--------HHHHHhc----CcHHHHHHhhc
Q 015496          201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG--------QEMFYVE----AGDLMLQDILG  268 (405)
Q Consensus       201 ~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~--------~~~f~~~----gGi~~L~~lL~  268 (405)
                      +..|+|...+      .+..|++++.+  +++...|.-+++-++.+.+..        .+.+++.    --++.|++..+
T Consensus       262 v~R~~~~~~~------~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~  333 (415)
T PF12460_consen  262 VMRGHPLATE------LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFK  333 (415)
T ss_pred             HHcCCchHHH------HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHh
Confidence            4456665544      45779999987  445566666666666663331        2222221    24566666666


Q ss_pred             CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh--CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD--RFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       269 s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~--~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                      ..  +...|..-..+++++..+    .+.   +.+..  ..++|-|++.|..+|.+++..++.+|..++...
T Consensus       334 ~~--~~~~k~~yL~ALs~ll~~----vP~---~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  334 EA--DDEIKSNYLTALSHLLKN----VPK---SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hc--ChhhHHHHHHHHHHHHhh----CCH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            54  223677888899999864    221   12222  268999999999999999999999999999764

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.23  E-value=0.44  Score=43.38  Aligned_cols=91  Identities=12%  Similarity=0.107  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCc-
Q 015496          230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF-  308 (405)
Q Consensus       230 ~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~-  308 (405)
                      +.+|..++-++|-++.-+|...+.+     ++.+..+|+++  ++.+|+.|+..+++|..+     +     .+.-.|- 
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~-----d-----~ik~k~~l   64 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCLRDE--DPLVRKTALLVLSHLILE-----D-----MIKVKGQL   64 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHHCCC--CHHHHHHHHHHHHHHHHc-----C-----ceeehhhh
Confidence            5689999999999988888776655     58888999987  678999999999999863     1     1222233 


Q ss_pred             HHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          309 LKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       309 l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      +..++.+|..+|++++..|..++..+...
T Consensus        65 ~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   65 FSRILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             hHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            37788888888999999999999998864

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=94.22  E-value=4.8  Score=40.69  Aligned_cols=149  Identities=17%  Similarity=0.123  Sum_probs=103.0

Q ss_pred             CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC---cHHHH
Q 015496          187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLML  263 (405)
Q Consensus       187 ~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g---Gi~~L  263 (405)
                      ++++=-.+-.+|..++.. +..-+.++....+-.+.+.+..++=++..-|...+-.+...|+.....|+..+   -+...
T Consensus       136 ~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~  214 (335)
T PF08569_consen  136 NPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKY  214 (335)
T ss_dssp             STTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred             CccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555553 44555566666666777777776767788889999998888888888888765   35677


Q ss_pred             HHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc-hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhh
Q 015496          264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE  341 (405)
Q Consensus       264 ~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~-~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~  341 (405)
                      ..+|.++  +.=.|+.++-+|+.|....   .+-... ..+.+..-++.++.+|++....+|-.|-....-.+..+...
T Consensus       215 ~~Ll~s~--NYvtkrqslkLL~ellldr---~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~  288 (335)
T PF08569_consen  215 NKLLESS--NYVTKRQSLKLLGELLLDR---SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKP  288 (335)
T ss_dssp             HHHCT-S--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-B
T ss_pred             HHHccCC--CeEeehhhHHHHHHHHHch---hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCC
Confidence            7888886  5668999999999998531   222222 23345578899999999999999999999999888876543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.12  E-value=1.6  Score=44.91  Aligned_cols=83  Identities=14%  Similarity=0.118  Sum_probs=68.6

Q ss_pred             CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CC---CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496          187 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  262 (405)
Q Consensus       187 ~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~-s~---~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~  262 (405)
                      -+.|=..|+.++.+...|.|.+-..+.+.|.++.+++-+. .+   +.++-...-.+|++||= |..+.++|.+.+.++.
T Consensus       122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~  200 (379)
T PF06025_consen  122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDK  200 (379)
T ss_pred             chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHH
Confidence            4889999999999999999999999999999999999888 33   23444445566666765 5688999999999999


Q ss_pred             HHHhhcCC
Q 015496          263 LQDILGNS  270 (405)
Q Consensus       263 L~~lL~s~  270 (405)
                      +.+++.++
T Consensus       201 ~f~if~s~  208 (379)
T PF06025_consen  201 LFEIFTSP  208 (379)
T ss_pred             HHHHhCCH
Confidence            99998765

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.02  E-value=2.1  Score=41.63  Aligned_cols=196  Identities=14%  Similarity=0.098  Sum_probs=124.0

Q ss_pred             CHHHHHHHHHHHHHccCCCC-chhHHHh-cCCHHHHHH-------hcCCCC--H---HHHHHHHHHHHHHhcCChHhHHH
Q 015496          146 SLEDSQRALQELLILVEPID-NANDLSK-LGGLSVLVG-------QLNHPD--T---DIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iD-nA~~~~~-~Ggi~~Lv~-------lL~s~~--~---~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      +++.|+.|+.+|..--+..+ .|--+-. -|.+..|++       .|..++  +   .--+.|..++-.+|+ +|+.+..
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~   86 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP   86 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence            46889999999998877764 3444444 355666653       222221  2   233455555556666 7999999


Q ss_pred             HHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015496          212 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  285 (405)
Q Consensus       212 vle~G~lp~Ll~LL~s~~-----~~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs  285 (405)
                      |++.+..-.|...|+..+     +-+|-.++..||++++.+ ++....+.....++...+.+..+  +...|.-|.|.+.
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlq  164 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQ  164 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence            999987766667776543     346889999999999974 55666667788999999999876  4557888999998


Q ss_pred             HHhhch--hccCCCCcchhHHh-CCcHHHHHH-hccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          286 DLAKCQ--LENMHKVEPPLFRD-RFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK  346 (405)
Q Consensus       286 ~L~~~~--~~~~~~~~~~~l~~-~g~l~~Lv~-LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~  346 (405)
                      -+....  +.-. =...+.|.. ..++..++. +...+++.+..++.++-..|++++. .+..++
T Consensus       165 KIL~dd~GL~yi-C~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr-ar~aL~  227 (262)
T PF04078_consen  165 KILLDDVGLNYI-CQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR-AREALR  227 (262)
T ss_dssp             HHHHSHHHHHHH-TSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT-HHHHHH
T ss_pred             HHHcchhHHHHH-hcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH-HHHHHH
Confidence            887531  0000 011122221 234444444 3455688999999999999988643 444443

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.99  E-value=4.5  Score=39.21  Aligned_cols=202  Identities=17%  Similarity=0.122  Sum_probs=129.1

Q ss_pred             CChHHHHHHHhhcCCCccccchhh---ccCCCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhc---CCCCH---
Q 015496           77 SSIDGMLQWAIGHSDPAKLKETAQ---DVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNN---STLSL---  147 (405)
Q Consensus        77 ~~l~~LLkwsi~~s~~~~~~~~~~---~~~~~s~e~l~~r~~~L~~a~~~~~~~~d~~lmk~al~~L~~---~~~t~---  147 (405)
                      .+-+++-+|.++-..|++...+-.   +.+...++.       =-.++.+++.  ...+.++.+.+.-.   +..++   
T Consensus        23 ~~~dk~~~~i~~l~~~p~rE~aL~ELskkre~~~dl-------A~~lW~s~g~--~~~LLqEivaiYp~l~p~~l~~~qs   93 (293)
T KOG3036|consen   23 SNNDKAYQLILSLVSPPTREMALLELSKKREPFPDL-------APMLWHSFGT--MVALLQEIVAIYPSLSPPTLTPAQS   93 (293)
T ss_pred             ccccchhhHHHHhhCCchHHHHHHHHHHhccCCccc-------cHHHHHhcch--HHHHHHHHHhcccccCCCCCCcccc
Confidence            345568999999877766321110   111111110       0134565553  45667776665422   21222   


Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHH
Q 015496          148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-----HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKL  221 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~-----s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~L  221 (405)
                      .--..||--|.-++...|....|.+...=-.|-.+|+     .+.+-+|-.|..+||.+++|.+ ++-...+..+.+|..
T Consensus        94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            2235677777777888999999999875445556664     3578899999999999999754 444445677999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCChhh------HHHHHhcCc-H-HHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          222 MKMVKSSFVEEAVKALYTVSSLIRNNLAG------QEMFYVEAG-D-LMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       222 l~LL~s~~~~v~~kAl~ALS~lir~~~~~------~~~f~~~gG-i-~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      ++....+++.-+.-|.+-+.-|+-+....      .+.|...+- + .++.++.+.+  +.++.+.++.+...|+.
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p--s~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP--SPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcC
Confidence            99999999888888999999888765432      233433221 1 2333333443  67788888888888773

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=93.89  E-value=0.21  Score=47.97  Aligned_cols=54  Identities=17%  Similarity=0.287  Sum_probs=43.2

Q ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHH-HHHHcCcHHHHHHhhcCCC
Q 015496          176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQK-QVLELGALSKLMKMVKSSF  229 (405)
Q Consensus       176 i~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~-~vle~G~lp~Ll~LL~s~~  229 (405)
                      +..|+++|. ..++-.|+.|.-+|.++++..+.... ...+.+.|..|+..+....
T Consensus       174 ~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~  229 (257)
T PF12031_consen  174 FHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAE  229 (257)
T ss_pred             HHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHH
Confidence            445667774 57899999999999999998777664 4467899999999997643

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=11  Score=39.49  Aligned_cols=179  Identities=17%  Similarity=0.125  Sum_probs=128.8

Q ss_pred             HHHHHHHHHccCC-CCchhHHHhcCCHHHHHH-hc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-
Q 015496          151 QRALQELLILVEP-IDNANDLSKLGGLSVLVG-QL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-  226 (405)
Q Consensus       151 ~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~-lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~-  226 (405)
                      ..++..++++++- .+.+...++.|.+.-|+. +- +.+-...+..|..+++-+-||+.+.+...-..+|+..+++-+. 
T Consensus       200 ~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~  279 (536)
T KOG2734|consen  200 HNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAV  279 (536)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcch
Confidence            4556666666643 245666677777777766 33 3467888999999999999999999999889999999998764 


Q ss_pred             ---CC----C-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC
Q 015496          227 ---SS----F-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV  298 (405)
Q Consensus       227 ---s~----~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~  298 (405)
                         .+    + .+.-+...-+||++++. +.++..|++..|++...-+++..+   ..+-.+...|-+...+.   ....
T Consensus       280 yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~EGlqLm~Lmlr~Kk---~sr~SalkvLd~am~g~---~gt~  352 (536)
T KOG2734|consen  280 YKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKGEGLQLMNLMLREKK---VSRGSALKVLDHAMFGP---EGTP  352 (536)
T ss_pred             hhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhccccHHHHHHHHHHHH---HhhhhHHHHHHHHHhCC---CchH
Confidence               12    1 23467888899999885 788999999999998877777542   24556777777777542   2224


Q ss_pred             cchhHHhCCcHHHHHHhcc-C---------CChHHHHHHHHHHHHHhc
Q 015496          299 EPPLFRDRFFLKSVVDLTA-S---------ADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       299 ~~~~l~~~g~l~~Lv~LL~-~---------~D~~v~E~al~aL~~L~~  336 (405)
                      .+..|++...++.+..+.. .         .-.+.-|+.+..|.++..
T Consensus       353 ~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  353 NCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            5667788777777665533 1         234677899988888775

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=93.59  E-value=5.6  Score=40.17  Aligned_cols=198  Identities=16%  Similarity=0.155  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHccCCCC-ch----hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015496          130 AQLIQIAIDDLNNSTL--SLEDSQRALQELLILVEPID-NA----NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS  202 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~--t~e~k~~AL~~L~~Lve~iD-nA----~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~a  202 (405)
                      +.+....+-+|.-.-.  +...|.-++..+-.++|+-| |+    ...++.|.++.++.++-..+.++-..|...|..++
T Consensus        77 ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria  156 (524)
T KOG4413|consen   77 AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA  156 (524)
T ss_pred             hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            4444455555544322  33467788888888999887 33    34567888999999999999999999999999998


Q ss_pred             cCChHhHHHHHHcCcHHHHH--HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015496          203 QNNPLVQKQVLELGALSKLM--KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA  280 (405)
Q Consensus       203 qNN~~~Q~~vle~G~lp~Ll--~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA  280 (405)
                      - .|..-+.+++...+..+-  .+...-++-+|...+.-|--+-.-++......-+.|-+..|..=|+.. .|.-++.++
T Consensus       157 l-fpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-eDtLVianc  234 (524)
T KOG4413|consen  157 L-FPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-EDTLVIANC  234 (524)
T ss_pred             h-cHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-cceeehhhH
Confidence            5 577777777776655432  222222233344444444444444566666777788888888888865 366788899


Q ss_pred             HHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHH--HHHHHHHHh
Q 015496          281 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK--ALAAIKNLL  335 (405)
Q Consensus       281 ~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~--al~aL~~L~  335 (405)
                      .-+++.|+..      +.-++.+.+.|++..+.+.+...|.+--++  ++.....+.
T Consensus       235 iElvteLaet------eHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkff  285 (524)
T KOG4413|consen  235 IELVTELAET------EHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFF  285 (524)
T ss_pred             HHHHHHHHHH------hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHh
Confidence            9999999852      234557778899999999887654443332  444444444

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.42  E-value=4.2  Score=40.05  Aligned_cols=167  Identities=15%  Similarity=0.087  Sum_probs=104.2

Q ss_pred             CCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-H
Q 015496          174 GGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-Q  251 (405)
Q Consensus       174 Ggi~~Lv-~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~-~  251 (405)
                      +.+..|| ..+.++++.||..|..++|-++-=+.+.-..     .++.+...++.+++.++..|+.+|.-++--|... .
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            4566665 7889999999999999999999766544332     4688888887778899999999999877665422 1


Q ss_pred             HHHHh-------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh-CCcHHHHHHhccC----C
Q 015496          252 EMFYV-------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSVVDLTAS----A  319 (405)
Q Consensus       252 ~~f~~-------~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~-~g~l~~Lv~LL~~----~  319 (405)
                      +....       ..-+..+.+.+.+.  +..++.-|+--+.-|.-..          .+.+ ..++..|+-+--+    +
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~~----------~i~~~~~vL~~Lll~yF~p~t~~  168 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLLSG----------RISDPPKVLSRLLLLYFNPSTED  168 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcC----------CCCcHHHHHHHHHHHHcCcccCC
Confidence            11111       23456777777776  5668888888888876431          1222 3444454443222    2


Q ss_pred             ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496          320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR  359 (405)
Q Consensus       320 D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~  359 (405)
                      +..++..--..+-..+..+..+...+.  .+..|.+..+-
T Consensus       169 ~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~--~~f~~~l~~~~  206 (298)
T PF12719_consen  169 NQRLRQCLSVFFPVYASSSPENQERLA--EAFLPTLRTLS  206 (298)
T ss_pred             cHHHHHHHHHHHHHHHcCCHHHHHHHH--HHHHHHHHHHH
Confidence            445555544445555555444444443  33334444443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=93.38  E-value=0.6  Score=48.98  Aligned_cols=142  Identities=15%  Similarity=0.112  Sum_probs=94.2

Q ss_pred             HhcCChhhHHHHHhcCcHHHHHHhh--------cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496          243 LIRNNLAGQEMFYVEAGDLMLQDIL--------GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD  314 (405)
Q Consensus       243 lir~~~~~~~~f~~~gGi~~L~~lL--------~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~  314 (405)
                      +.|+ +.+.+.++...|+..|..+-        .....+..+.+.|..+|.|+...     ++..+..+.+.|+.+.+++
T Consensus         8 LsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~-----s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    8 LSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFL-----SPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhC-----CHHHHHHHHHcCcHHHHHH
Confidence            3343 34555555556666666654        11224678899999999999974     5677888999999999999


Q ss_pred             hccCC-----ChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCchHHHHHHHHHHHHhhhch--------hhhhhHHHHHH
Q 015496          315 LTASA-----DLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVMLEE--------DQRDYAMDVEA  380 (405)
Q Consensus       315 LL~~~-----D~~v~E~al~aL~~L~~~~~~~~~~v~~~-~Gl~~~L~~L~~~~~~l~~~~--------~q~~~~~d~~~  380 (405)
                      .|+..     +.++.=-.++.|.-++....+.+..+.++ .|+.-....|..+++......        .+.+.+  .|.
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l--~Ei  159 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL--SEI  159 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH--HHH
Confidence            99886     77888888888888887766766665545 566556666766665433311        233333  555


Q ss_pred             HHHHHHHHHhhh
Q 015496          381 LRREVELIFFRK  392 (405)
Q Consensus       381 l~~e~~~~~~~k  392 (405)
                      |+-...++.+..
T Consensus       160 LKllFNit~~~~  171 (446)
T PF10165_consen  160 LKLLFNITLHYP  171 (446)
T ss_pred             HHHHHHhhhccC
Confidence            555555554444

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=93.37  E-value=1.2  Score=41.22  Aligned_cols=145  Identities=14%  Similarity=0.071  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHhcC-ChHhHH----HHH------HcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh
Q 015496          189 DIRKISAWILGKASQN-NPLVQK----QVL------ELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV  256 (405)
Q Consensus       189 ~Ir~~Aa~~Lg~~aqN-N~~~Q~----~vl------e~G~lp~Ll~L-L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~  256 (405)
                      .+|..|..+|..++++ .++.--    .++      ..+.-+.|+.+ +.++++.+|..|+.+|+.+..+..+....--+
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~   80 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE   80 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence            3799999999999998 332110    011      11234445544 45566789999999999999886553333222


Q ss_pred             cC-------------------cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc
Q 015496          257 EA-------------------GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA  317 (405)
Q Consensus       257 ~g-------------------Gi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~  317 (405)
                      ..                   --..|...|+..+ +..+....+-++..|+..   .+.......+. ..++..+..++.
T Consensus        81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~---tPY~rL~~~ll-~~~v~~v~~~l~  155 (182)
T PF13251_consen   81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQA---TPYHRLPPGLL-TEVVTQVRPLLR  155 (182)
T ss_pred             cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHcc---CChhhcCHhHH-HHHHHHHHHHHh
Confidence            22                   1234555566553 445667788888888764   12222222221 124445556677


Q ss_pred             CCChHHHHHHHHHHHHHhcCC
Q 015496          318 SADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       318 ~~D~~v~E~al~aL~~L~~~~  338 (405)
                      +.|++++..++.+++.+++..
T Consensus       156 ~~d~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  156 HRDPNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             cCCCcHHHHHHHHHHHHHcCC
Confidence            899999999999999998653

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=93.24  E-value=1  Score=37.25  Aligned_cols=93  Identities=12%  Similarity=-0.029  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496          191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS  270 (405)
Q Consensus       191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~  270 (405)
                      |..+...|+.++..-++.-...+ .-.+|+++..+.+++..+|..|+-+|.++++......-.+ -...++.|.+++.++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence            55667777777666554432222 2578999999999999999999999999988754322111 135778888888876


Q ss_pred             CccHHHHHHHHHHHHHHh
Q 015496          271 SFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       271 ~~~~kl~~kA~~lLs~L~  288 (405)
                        +..+|. ++.++-.|.
T Consensus        81 --d~~Vr~-~a~~Ld~ll   95 (97)
T PF12755_consen   81 --DENVRS-AAELLDRLL   95 (97)
T ss_pred             --chhHHH-HHHHHHHHh
Confidence              555554 556666554

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.17  E-value=11  Score=42.96  Aligned_cols=121  Identities=15%  Similarity=0.172  Sum_probs=79.6

Q ss_pred             HHHHHHHHhhc------CCCCHHHHHHHHHHHHHccCCC----CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 015496          132 LIQIAIDDLNN------STLSLEDSQRALQELLILVEPI----DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA  201 (405)
Q Consensus       132 lmk~al~~L~~------~~~t~e~k~~AL~~L~~Lve~i----DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~  201 (405)
                      .|.=+++++..      +..+.-.|..||..+..+++-+    -.++.+..+ ..+.+...++++.--+|.+|||+++..
T Consensus       411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f-lv~hVfP~f~s~~g~Lrarac~vl~~~  489 (1010)
T KOG1991|consen  411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF-LVNHVFPEFQSPYGYLRARACWVLSQF  489 (1010)
T ss_pred             HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH-HHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence            34445566662      2234456667776666655333    234444444 566777888999999999999999999


Q ss_pred             hcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          202 SQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFY  255 (405)
Q Consensus       202 aqNN~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~~~~f~  255 (405)
                      +.-+=+.+..+  ..++......+.+ .+-+|+..|..||.+++.+.+.+-.++.
T Consensus       490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~  542 (1010)
T KOG1991|consen  490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS  542 (1010)
T ss_pred             HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence            94322222222  2456667777774 4458999999999999999876644443

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=92.89  E-value=0.95  Score=44.01  Aligned_cols=168  Identities=17%  Similarity=0.131  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHhhcCC---CCH--HHH-HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC-----CCHHHHHHHHHH
Q 015496          129 DAQLIQIAIDDLNNST---LSL--EDS-QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-----PDTDIRKISAWI  197 (405)
Q Consensus       129 d~~lmk~al~~L~~~~---~t~--e~k-~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s-----~~~~Ir~~Aa~~  197 (405)
                      .+.+++|.+.+...-+   .+.  .++ ..||.-|.-++...|....|.+....-.|..+|+.     +.+-+|-.+..+
T Consensus        40 i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGV  119 (262)
T PF04078_consen   40 IAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGV  119 (262)
T ss_dssp             HHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHH
Confidence            4567777777764422   233  233 46777777777889999999999887777788863     247799999999


Q ss_pred             HHHHhc-CChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH-------HHHHh-cCcHHHHHHhhc
Q 015496          198 LGKASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-------EMFYV-EAGDLMLQDILG  268 (405)
Q Consensus       198 Lg~~aq-NN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~-------~~f~~-~gGi~~L~~lL~  268 (405)
                      ||.+++ +++++-..+++...+|..++.+..+++-.+..|.+-+..|+-+. .+.       +.|.. ...+..++.-+.
T Consensus       120 IgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd-~GL~yiC~t~eRf~av~~vL~~mV~~l~  198 (262)
T PF04078_consen  120 IGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDD-VGLNYICQTAERFFAVAMVLNKMVEQLV  198 (262)
T ss_dssp             HHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcch-hHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence            999998 56778888888999999999999988777888999888887653 332       33332 223443333333


Q ss_pred             CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496          269 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  304 (405)
Q Consensus       269 s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~  304 (405)
                      .. .+.++.+.++.+..-|+.      ++..++.+.
T Consensus       199 ~~-pS~RLLKhIIrCYlRLsd------nprar~aL~  227 (262)
T PF04078_consen  199 KQ-PSPRLLKHIIRCYLRLSD------NPRAREALR  227 (262)
T ss_dssp             HS---HHHHHHHHHHHHHHTT------STTHHHHHH
T ss_pred             cC-CChhHHHHHHHHHHHHcc------CHHHHHHHH
Confidence            22 267888888888888874      445555544

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=92.23  E-value=0.64  Score=51.00  Aligned_cols=152  Identities=17%  Similarity=0.136  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhcCC--
Q 015496          129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNN--  205 (405)
Q Consensus       129 d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~-~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN--  205 (405)
                      -+.+.-..+..|+|.  +...+..|++-+..+.--+.+.....-+|-+- .|...|...++++--.-..+|..|+.-.  
T Consensus       797 lpqi~stiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm  874 (1172)
T KOG0213|consen  797 LPQICSTILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGM  874 (1172)
T ss_pred             hHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence            345566677778876  46778888887777654444443333333332 4567888889998877777666666321  


Q ss_pred             hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015496          206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  282 (405)
Q Consensus       206 ~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~---~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~  282 (405)
                      .+.+--  -.|.+|.|.-+|++.+..+++..+--++.|+-..++-   ++...   .-=-|+.+|++.  .-.+|+.|..
T Consensus       875 ~km~pP--i~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkah--kK~iRRaa~n  947 (1172)
T KOG0213|consen  875 TKMTPP--IKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAH--KKEIRRAAVN  947 (1172)
T ss_pred             cccCCC--hhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHH--HHHHHHHHHh
Confidence            001100  1378999999999999999999999999888776652   22211   111245556654  3458999999


Q ss_pred             HHHHHhh
Q 015496          283 LVGDLAK  289 (405)
Q Consensus       283 lLs~L~~  289 (405)
                      .+.+++.
T Consensus       948 TfG~Iak  954 (1172)
T KOG0213|consen  948 TFGYIAK  954 (1172)
T ss_pred             hhhHHHH
Confidence            9999875

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=92.11  E-value=1.7  Score=49.61  Aligned_cols=140  Identities=10%  Similarity=0.012  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHhcCChHhHHHHHH----cCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496          188 TDIRKISAWILGKASQNNPLVQKQVLE----LGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  262 (405)
Q Consensus       188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle----~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~  262 (405)
                      .+-...+..+|.|+..-||.....|-.    -|.++.+..++... ...++.-|+..++-+ ..|.++...+...|.+..
T Consensus      1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~-Tan~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLA-TANKECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHH-hcccHHHHHHHhhhHHHH
Confidence            445568899999999999977766543    27888888888764 456777788877755 567889999999999999


Q ss_pred             HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhcC
Q 015496          263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       263 L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~~~  337 (405)
                      |..+|.+-   +..|..++-.++.|++      +++....-.++|.+..+.+++-. .+++.+..++..+..|..+
T Consensus      1818 LL~lLHS~---PS~R~~vL~vLYAL~S------~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1818 LLTLLHSQ---PSMRARVLDVLYALSS------NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred             HHHHHhcC---hHHHHHHHHHHHHHhc------CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence            99999874   5679999999999984      45666666778888888887755 4778888999988888765

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.00  E-value=4.2  Score=44.63  Aligned_cols=125  Identities=21%  Similarity=0.218  Sum_probs=89.0

Q ss_pred             HHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHH
Q 015496          152 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE  231 (405)
Q Consensus       152 ~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~  231 (405)
                      .-+-.+-.-.++.|.-++|+. |-+..+++...+++..||+..+.+|+-+.-+|.+.-+.+. .+....++.-+.+-.+.
T Consensus        64 ~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~  141 (892)
T KOG2025|consen   64 SFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPN  141 (892)
T ss_pred             HHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCch
Confidence            334444445567777888764 6788888888999999999999999999987665555444 46667777667676788


Q ss_pred             HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015496          232 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV  284 (405)
Q Consensus       232 v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lL  284 (405)
                      ||..|+.|||-+-.+ +. -+   +......+..+++++. +..+|+-|+..|
T Consensus       142 VRiqAv~aLsrlQ~d-~~-de---e~~v~n~l~~liqnDp-S~EVRRaaLsnI  188 (892)
T KOG2025|consen  142 VRIQAVLALSRLQGD-PK-DE---ECPVVNLLKDLIQNDP-SDEVRRAALSNI  188 (892)
T ss_pred             HHHHHHHHHHHHhcC-CC-CC---cccHHHHHHHHHhcCC-cHHHHHHHHHhh
Confidence            999999999988533 11 11   2345678888888763 566888664433

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=91.79  E-value=2.5  Score=42.38  Aligned_cols=167  Identities=14%  Similarity=0.114  Sum_probs=101.5

Q ss_pred             CCCchhHHHhc-CCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHh-HHHHHHcCcHHHHHHhhcCC---CHHHHHHH
Q 015496          163 PIDNANDLSKL-GGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLV-QKQVLELGALSKLMKMVKSS---FVEEAVKA  236 (405)
Q Consensus       163 ~iDnA~~~~~~-Ggi~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aqNN~~~-Q~~vle~G~lp~Ll~LL~s~---~~~v~~kA  236 (405)
                      +...|.++-++ ..+.-|+.+.+. ..+.|-...+.++.+++...|+- -...+-.|-+.+-++.|...   +++++ .-
T Consensus       223 ~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~-~d  301 (432)
T COG5231         223 SKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELV-ID  301 (432)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHH-HH
Confidence            34456555554 345566676654 45777788899999998743321 11122234344445555432   12221 11


Q ss_pred             HHHHHH----------------------HhcCChh---------hHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496          237 LYTVSS----------------------LIRNNLA---------GQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSL  283 (405)
Q Consensus       237 l~ALS~----------------------lir~~~~---------~~~~f~~--~gGi~~L~~lL~s~~~~~kl~~kA~~l  283 (405)
                      +.-|-+                      +..-+|+         +.+.|.+  +..+..|.+++++...+. ...-|+.=
T Consensus       302 i~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt-~i~vAc~D  380 (432)
T COG5231         302 IERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNT-WICVACSD  380 (432)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCc-eEeeeHhh
Confidence            111111                      1111221         4555654  346788888888764332 23347777


Q ss_pred             HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496          284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       284 Ls~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~  336 (405)
                      |..+.+     ..|+.+..+.+.|+-..+.++++++|++++=.|+.|+..+..
T Consensus       381 i~~~Vr-----~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         381 IFQLVR-----ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHHH-----hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            777775     468888899999999999999999999999999999988764

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.59  E-value=1.5  Score=43.63  Aligned_cols=113  Identities=16%  Similarity=0.117  Sum_probs=83.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496          218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  295 (405)
Q Consensus       218 lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~--~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~  295 (405)
                      +-.++.++.+.++.++..|+--+.+++..  + .+.|.+  .--++.|.+++...  +.  .+.|++++.|++.      
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~-~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq------   71 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--G-LQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQ------   71 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--c-hhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHh------
Confidence            45688999999999999999999988765  2 223322  33566677777765  22  5679999999984      


Q ss_pred             CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHH
Q 015496          296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALV  344 (405)
Q Consensus       296 ~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~  344 (405)
                      ++..+..+.+. +++.++..+..+....-+..+.+|+||++..+.....
T Consensus        72 ~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~l  119 (353)
T KOG2973|consen   72 KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAAL  119 (353)
T ss_pred             hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHH
Confidence            45566666666 8899999988887788888999999999876554433

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=91.40  E-value=0.66  Score=48.67  Aligned_cols=153  Identities=16%  Similarity=0.133  Sum_probs=89.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh----cCChh---hHHHHHh
Q 015496          184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI----RNNLA---GQEMFYV  256 (405)
Q Consensus       184 ~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~li----r~~~~---~~~~f~~  256 (405)
                      +|.+.-++..|.+.++-.+=...--+....-.++...++..+.+..-..|+|+.|++|||.    -+-|.   .+..|..
T Consensus       401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg  480 (728)
T KOG4535|consen  401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG  480 (728)
T ss_pred             chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH
Confidence            3555667888888888777654444444445567777777777666678999999999864    33333   3344432


Q ss_pred             cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh-ccCCChHHHHHHHHHHHHHh
Q 015496          257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL-TASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       257 ~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~L-L~~~D~~v~E~al~aL~~L~  335 (405)
                      .--...+.....++.+..|++.++...+.|+.+-- ....+-....+ ..+-+..+... +......++=.++.+++||.
T Consensus       481 ~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl-q~i~~~~~~e~-~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLf  558 (728)
T KOG4535|consen  481 LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL-QPIEKPTFAEI-IEESIQALISTVLTEAAMKVRWNACYAMGNLF  558 (728)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH-HHhhhccHHHH-HHHHHHhcccceecccccccchHHHHHHHHhh
Confidence            22222333333444456789999999999997421 00001001111 12222222222 23346678888888888888


Q ss_pred             cCC
Q 015496          336 QLR  338 (405)
Q Consensus       336 ~~~  338 (405)
                      ++.
T Consensus       559 kn~  561 (728)
T KOG4535|consen  559 KNP  561 (728)
T ss_pred             cCc
Confidence            764

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=91.33  E-value=17  Score=38.28  Aligned_cols=187  Identities=16%  Similarity=0.151  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-ccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChH
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPL  207 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~-Lve~iDnA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~  207 (405)
                      ..+++..+..+.+.+ ..+++..|+.+|-. ++++--.-++=+....+..+++.|. +.++.+|..|.++|+.++.|-| 
T Consensus       285 ~~~v~~~l~~~~g~e-~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-  362 (516)
T KOG2956|consen  285 SALVADLLKEISGSE-RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-  362 (516)
T ss_pred             hHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-
Confidence            467777777777764 45677778776665 4455333333122223556677775 4889999999999999998744 


Q ss_pred             hHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015496          208 VQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  285 (405)
Q Consensus       208 ~Q~~vle~--G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs  285 (405)
                        ..+.+.  =++.++++--.+..+++-.-|.-+++.++..+.|-+.       +..+..++.+.  |...-.-++-.+.
T Consensus       363 --~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-------I~~i~~~Ilt~--D~~~~~~~iKm~T  431 (516)
T KOG2956|consen  363 --ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-------IVNISPLILTA--DEPRAVAVIKMLT  431 (516)
T ss_pred             --HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-------HHHHhhHHhcC--cchHHHHHHHHHH
Confidence              223322  3667777777776666655455555544444433322       23344444432  2222223333555


Q ss_pred             HHhhchhccCCCCcchhHHh--CCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496          286 DLAKCQLENMHKVEPPLFRD--RFFLKSVVDLTASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       286 ~L~~~~~~~~~~~~~~~l~~--~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~  336 (405)
                      -++..    ..   .+.+..  ..+.|.+++--.+....+|..|..+|..+..
T Consensus       432 kl~e~----l~---~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  432 KLFER----LS---AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             HHHhh----cC---HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence            55532    11   112211  3677888888888899999999988888863

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.13  E-value=22  Score=37.29  Aligned_cols=197  Identities=16%  Similarity=0.075  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-----C----hHhHHHHHHcCcHHH
Q 015496          150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-----N----PLVQKQVLELGALSK  220 (405)
Q Consensus       150 k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-----N----~~~Q~~vle~G~lp~  220 (405)
                      ....++.+--+...+|---.|++++|++.|+.+|.|.|.+|-......+-.+.--     +    ...-++.++.+.++.
T Consensus       101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL  180 (536)
T KOG2734|consen  101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL  180 (536)
T ss_pred             HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence            3455667777777888888999999999999999999999999988888877632     1    134456677899999


Q ss_pred             HHHhhcCCCHHH------HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015496          221 LMKMVKSSFVEE------AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN  294 (405)
Q Consensus       221 Ll~LL~s~~~~v------~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~  294 (405)
                      |++.+.-=++++      ...++.-+-|++.-.+......++.|-+..|..=+.....-..-+.-|.-.++=+..+    
T Consensus       181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~----  256 (536)
T KOG2734|consen  181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN----  256 (536)
T ss_pred             HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc----
Confidence            999886433222      2345666667776666667777777778877764433211111244455555555532    


Q ss_pred             CCCCcchhHHhCCcHHHHHHhccC----C-----ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCch
Q 015496          295 MHKVEPPLFRDRFFLKSVVDLTAS----A-----DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD  352 (405)
Q Consensus       295 ~~~~~~~~l~~~g~l~~Lv~LL~~----~-----D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~  352 (405)
                      + .+.+..+..-..+..++.-+..    +     .-++-|..-.+|+.++..+. .+..|...-|+.
T Consensus       257 s-~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlq  321 (536)
T KOG2734|consen  257 S-DENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQ  321 (536)
T ss_pred             C-chhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHH
Confidence            2 2344445555555555554432    1     24577888888888887654 566666466654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=91.08  E-value=6.6  Score=42.34  Aligned_cols=100  Identities=17%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY  255 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~  255 (405)
                      +..++.|....+..||..|...|..+|.+||+.-..|     ...|++||.+++......+=.+|.++.+.++.+     
T Consensus        61 i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~-----  130 (556)
T PF05918_consen   61 INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG-----  130 (556)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH-----
T ss_pred             HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH-----
Confidence            4445555555678999999999999999988666655     478999999988766666777888888877653     


Q ss_pred             hcCcHHHHH-HhhcCCCccHHHHHHHHHHHHHHh
Q 015496          256 VEAGDLMLQ-DILGNSSFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       256 ~~gGi~~L~-~lL~s~~~~~kl~~kA~~lLs~L~  288 (405)
                         -+..|. +++.+.+.+..+|.++..+|..=.
T Consensus       131 ---tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl  161 (556)
T PF05918_consen  131 ---TLTGLFSQIESSKSGDEQVRERALKFLREKL  161 (556)
T ss_dssp             ---HHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred             ---HHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence               222222 333222235668999887775544

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=91.08  E-value=5.3  Score=42.94  Aligned_cols=145  Identities=14%  Similarity=0.117  Sum_probs=100.8

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  254 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f  254 (405)
                      .+..++.-++.+.+.+|.....|+....-.-...+.    .-.++.+.+++++++...+.++.|++..+++++.  ...+
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~----~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~  170 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG----EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL  170 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH----HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence            466777888889999999999888887754221111    2357888899998777889999999999998754  5677


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHH-HHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc---cCCChHHHHHHHHH
Q 015496          255 YVEAGDLMLQDILGNSSFEIRLHRK-AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT---ASADLDLQEKALAA  330 (405)
Q Consensus       255 ~~~gGi~~L~~lL~s~~~~~kl~~k-A~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL---~~~D~~v~E~al~a  330 (405)
                      .+.+-+..|...+++.+  ...++. +.++...++.+    .++     ..+..+++.+..+|   ......+|+.|-.+
T Consensus       171 ~~~~~l~~l~~ai~dk~--~~~~re~~~~a~~~~~~~----Lg~-----~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a  239 (569)
T KOG1242|consen  171 KEFGFLDNLSKAIIDKK--SALNREAALLAFEAAQGN----LGP-----PFEPYIVPILPSILTNFGDKINKVREAAVEA  239 (569)
T ss_pred             hhhhHHHHHHHHhcccc--hhhcHHHHHHHHHHHHHh----cCC-----CCCchHHhhHHHHHHHhhccchhhhHHHHHH
Confidence            78888999999998763  334443 44444444442    222     23344555555444   44578899988888


Q ss_pred             HHHHhc
Q 015496          331 IKNLLQ  336 (405)
Q Consensus       331 L~~L~~  336 (405)
                      ...+..
T Consensus       240 ~kai~~  245 (569)
T KOG1242|consen  240 AKAIMR  245 (569)
T ss_pred             HHHHHH
Confidence            887764

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.94  E-value=5  Score=44.25  Aligned_cols=161  Identities=14%  Similarity=0.148  Sum_probs=107.7

Q ss_pred             HhHHHHHHHHHHcC-CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015496          112 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI  190 (405)
Q Consensus       112 ~r~~~L~~a~~~~~-~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~I  190 (405)
                      +|++-+|.++..|+ |+|...+--.-+.-....  +.+.|.-.-.-+.    +.-..+-....+.+..++.=...+++.|
T Consensus        29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~--dlelKKlvyLYl~----nYa~~~P~~a~~avnt~~kD~~d~np~i  102 (734)
T KOG1061|consen   29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTR--DLELKKLVYLYLM----NYAKGKPDLAILAVNTFLKDCEDPNPLI  102 (734)
T ss_pred             hHHHHHHHHHhcCccCcchHhhhHHHHhhcccC--CchHHHHHHHHHH----HhhccCchHHHhhhhhhhccCCCCCHHH
Confidence            68888899999886 444333322222222222  3444443322222    2333334444566777777777899999


Q ss_pred             HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496          191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS  270 (405)
Q Consensus       191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~  270 (405)
                      |..|.+.++.+--  ++..+.     ...+|.+.++++.+-+|..|...+.++-..+   .+.+...|-++.|..++.+.
T Consensus       103 R~lAlrtm~~l~v--~~i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~  172 (734)
T KOG1061|consen  103 RALALRTMGCLRV--DKITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDS  172 (734)
T ss_pred             HHHHhhceeeEee--hHHHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCC
Confidence            9999988887653  344443     4688999999999999988888887774433   45677888899999999965


Q ss_pred             CccHHHHHHHHHHHHHHhhc
Q 015496          271 SFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       271 ~~~~kl~~kA~~lLs~L~~~  290 (405)
                        ++-+-.+|+.+++.+...
T Consensus       173 --~p~VVAnAlaaL~eI~e~  190 (734)
T KOG1061|consen  173 --NPMVVANALAALSEIHES  190 (734)
T ss_pred             --CchHHHHHHHHHHHHHHh
Confidence              455788898888888753

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.85  E-value=10  Score=43.83  Aligned_cols=209  Identities=16%  Similarity=0.133  Sum_probs=120.4

Q ss_pred             HHhHHHHHHHHHHcCCCCHH----HHHHHHHHHhhcCC--CCHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhc
Q 015496          111 KKRQMEIKELMEKLKTPSDA----QLIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQL  183 (405)
Q Consensus       111 ~~r~~~L~~a~~~~~~~~d~----~lmk~al~~L~~~~--~t~e~k~~AL~~L~~Lve~iDn-A~~~~~~Ggi~~Lv~lL  183 (405)
                      +++++.|.+++..   |+-.    +.+....+.+.++-  .+.-.+...+..|..+++-.++ --+|+- ..|+-+|=++
T Consensus       672 kK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~I~EvIL~~  747 (1176)
T KOG1248|consen  672 KKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-KLIPEVILSL  747 (1176)
T ss_pred             HHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHhc
Confidence            3577778888764   2222    22222223332211  1223445555555555544441 112222 2355455455


Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC------cHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhhHHH
Q 015496          184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELG------ALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEM  253 (405)
Q Consensus       184 ~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G------~lp~Ll~LL~s~----~~~v~~kAl~ALS~lir~~~~~~~~  253 (405)
                      +.-+..-|..|..+|-.++.     -+.+.+.|      .|..++.++...    +..+....+.|+..+..++....+.
T Consensus       748 Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~  822 (1176)
T KOG1248|consen  748 KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD  822 (1176)
T ss_pred             ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH
Confidence            77888999999999888882     11122233      455566555543    3334444488999888776655444


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496          254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN  333 (405)
Q Consensus       254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~  333 (405)
                      -.-.+-++.+..+|.+.  ...+++-|+.++.-++..     .|+..-.-....+++.+..+++.....++.++-..|..
T Consensus       823 ~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~-----~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek  895 (1176)
T KOG1248|consen  823 ETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYK-----FPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK  895 (1176)
T ss_pred             HHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHc-----CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            44455677777778876  567888999999998863     23221111223477888887766677788777766666


Q ss_pred             Hh
Q 015496          334 LL  335 (405)
Q Consensus       334 L~  335 (405)
                      |.
T Consensus       896 Li  897 (1176)
T KOG1248|consen  896 LI  897 (1176)
T ss_pred             HH
Confidence            65

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.81  E-value=5.5  Score=42.72  Aligned_cols=140  Identities=18%  Similarity=0.168  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCH-HHHHHHHHHHHHHhc--CChHhHHHHHHcC-cHHHHH
Q 015496          147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT-DIRKISAWILGKASQ--NNPLVQKQVLELG-ALSKLM  222 (405)
Q Consensus       147 ~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~-~Ir~~Aa~~Lg~~aq--NN~~~Q~~vle~G-~lp~Ll  222 (405)
                      ++-+..|+.=+.++|.-..+.--..-.|.+..++.|+.++++ .+++.|..+-+.+..  ..+...+. ++.| .+..|.
T Consensus       264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~  342 (675)
T KOG0212|consen  264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLT  342 (675)
T ss_pred             HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHH
Confidence            456677888888877655555555556778888899877666 588777766533332  11211111 3333 567788


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       223 ~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      +.++++..+.|..++-=|.-+-+..| ++-.......++.|..-|.+.+  ..+-.++.++++++|..
T Consensus       343 ~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~s--d~vvl~~L~lla~i~~s  407 (675)
T KOG0212|consen  343 KYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRS--DEVVLLALSLLASICSS  407 (675)
T ss_pred             HHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCch--hHHHHHHHHHHHHHhcC
Confidence            88988888999999999988876554 3333445567888888888763  34788999999999964

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=90.80  E-value=0.71  Score=48.43  Aligned_cols=178  Identities=15%  Similarity=0.123  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc----C--ChHhHHHHHHcCcHHHH
Q 015496          149 DSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQ----N--NPLVQKQVLELGALSKL  221 (405)
Q Consensus       149 ~k~~AL~~L~~Lve~iDnA~~~~~-~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq----N--N~~~Q~~vle~G~lp~L  221 (405)
                      .+..|+..+.-+|-..-.+.+..- ......++..|.+..-..|..|+|.+|+|.-    |  ||..+..=+..-.|..+
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~  486 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM  486 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            344555555555544433333221 2344555556666677899999999999874    3  33344333323345555


Q ss_pred             HHhhcCC---CHHHHHHHHHHHHHHhcCChhhH---HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496          222 MKMVKSS---FVEEAVKALYTVSSLIRNNLAGQ---EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  295 (405)
Q Consensus       222 l~LL~s~---~~~v~~kAl~ALS~lir~~~~~~---~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~  295 (405)
                      ++.....   ...|+..|+.||+|+..--.+.+   ......|.+..+....-.+ ...++|-+||++++||..+.    
T Consensus       487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~-~~~kV~WNaCya~gNLfkn~----  561 (728)
T KOG4535|consen  487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTE-AAMKVRWNACYAMGNLFKNP----  561 (728)
T ss_pred             HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecc-cccccchHHHHHHHHhhcCc----
Confidence            5554332   35688899999999864221111   0111122222322222222 36789999999999998642    


Q ss_pred             CCCcchhHHhCCc----HHHHHHhcc-CCChHHHHHHHHHHHHHh
Q 015496          296 HKVEPPLFRDRFF----LKSVVDLTA-SADLDLQEKALAAIKNLL  335 (405)
Q Consensus       296 ~~~~~~~l~~~g~----l~~Lv~LL~-~~D~~v~E~al~aL~~L~  335 (405)
                        ..  .+.+..+    .+.|..++. ..+..++..|+.+|..-.
T Consensus       562 --a~--~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~  602 (728)
T KOG4535|consen  562 --AL--PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG  602 (728)
T ss_pred             --cc--cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence              11  1333333    344455543 357788888887665544

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.79  E-value=2.9  Score=36.84  Aligned_cols=70  Identities=16%  Similarity=0.180  Sum_probs=56.1

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHh
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLI  244 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s------~~~~v~~kAl~ALS~li  244 (405)
                      ++..+.+-|+++++.++..|..+|-++++|- +.++..|...+.+..|++++..      .+..|+.+.+.-|-.-.
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT  115 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            4556667778999999999999999999986 5588888889999999999963      34678887776555443

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=90.76  E-value=1  Score=48.58  Aligned_cols=151  Identities=15%  Similarity=0.158  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc---hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN---ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  206 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn---A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~  206 (405)
                      +.++-..+..|++.  +++.+..|++-..-++.-+.+   -..+.++|.  .|...|...++++--.-..++..+.+-..
T Consensus       603 ~~ivStiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~  678 (975)
T COG5181         603 SMIVSTILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHR  678 (975)
T ss_pred             HHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence            45566777778776  567777777766655433332   334445543  35677778889988777777777664321


Q ss_pred             HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496          207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL  283 (405)
Q Consensus       207 ~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~---~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~l  283 (405)
                      .-.-+---.|.+|.|..+|++.+..+.+..+--++-|+.+.|.-   ++...   .-=-|+..|++.  +-.+|+.|...
T Consensus       679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~--nKeiRR~A~~t  753 (975)
T COG5181         679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSW--NKEIRRNATET  753 (975)
T ss_pred             ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHh--hHHHHHhhhhh
Confidence            11000011488999999999999888888888888888777652   11111   111245556664  45689999998


Q ss_pred             HHHHhh
Q 015496          284 VGDLAK  289 (405)
Q Consensus       284 Ls~L~~  289 (405)
                      +..+++
T Consensus       754 fG~Is~  759 (975)
T COG5181         754 FGCISR  759 (975)
T ss_pred             hhhHHh
Confidence            888874

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=90.65  E-value=6.2  Score=44.46  Aligned_cols=171  Identities=15%  Similarity=0.209  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496          148 EDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  224 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~iDnA~~~~~--~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L  224 (405)
                      .++..|++.+-..+++--  ....+  .|.+-.++... ...|..+-..|+.+|.-++......-.. +-.+.+|.|++-
T Consensus       268 K~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v~p~lld~  344 (815)
T KOG1820|consen  268 KDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNVFPSLLDR  344 (815)
T ss_pred             HHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhhcchHHHH
Confidence            467778777777765543  11111  22344444443 4578899999999999999876554221 223788999999


Q ss_pred             hcCCCHHHH---HHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcch
Q 015496          225 VKSSFVEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP  301 (405)
Q Consensus       225 L~s~~~~v~---~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~  301 (405)
                      +......++   .+++-++++...-.          .-.+.+..+++++  ++.++..+..++......    .++....
T Consensus       345 lkekk~~l~d~l~~~~d~~~ns~~l~----------~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~----~~~~~~~  408 (815)
T KOG1820|consen  345 LKEKKSELRDALLKALDAILNSTPLS----------KMSEAILEALKGK--NPQIKGECLLLLDRKLRK----LGPKTVE  408 (815)
T ss_pred             hhhccHHHHHHHHHHHHHHHhcccHH----------HHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhh----cCCcCcc
Confidence            887665554   45666666622211          1346677778876  566777766666655542    2323333


Q ss_pred             hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          302 LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       302 ~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      .-.-.++++.++...+..|.+||..|+.++..+...
T Consensus       409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~  444 (815)
T KOG1820|consen  409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV  444 (815)
T ss_pred             hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence            333457889999998888999999999999988754

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=90.57  E-value=3.9  Score=43.67  Aligned_cols=159  Identities=16%  Similarity=0.136  Sum_probs=109.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC----CHHHHHHHHHHHHHHh
Q 015496          127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP----DTDIRKISAWILGKAS  202 (405)
Q Consensus       127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~----~~~Ir~~Aa~~Lg~~a  202 (405)
                      .++....+++++++.++.  ...|..|+..|..+.-+...|..|++..|+..|.++..+.    +.++......+...+.
T Consensus        79 ~sp~~~a~~i~e~l~~~~--~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm  156 (713)
T KOG2999|consen   79 ASPSHYAKRIMEILTEGN--NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM  156 (713)
T ss_pred             cCchHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence            355677889999998874  5667779999999988888999999999999999999764    3456555555555443


Q ss_pred             cCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015496          203 QNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA  280 (405)
Q Consensus       203 qNN~~~Q~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA  280 (405)
                      -.--..-+ .+...++.....+.+-.  +.++-..|+.-|-+++-+...-.+.+.+.--++-|+..++..  +..++..|
T Consensus       157 ehgvvsW~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~--n~~i~~~a  233 (713)
T KOG2999|consen  157 EHGVVSWE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS--NQRIQTCA  233 (713)
T ss_pred             hhceeeee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc--chHHHHHH
Confidence            22110000 01112233333333221  223455677777788777777777777778888888888875  67789999


Q ss_pred             HHHHHHHhhc
Q 015496          281 VSLVGDLAKC  290 (405)
Q Consensus       281 ~~lLs~L~~~  290 (405)
                      ..++..|...
T Consensus       234 ial~nal~~~  243 (713)
T KOG2999|consen  234 IALLNALFRK  243 (713)
T ss_pred             HHHHHHHHhh
Confidence            9999998763

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=90.36  E-value=4  Score=36.04  Aligned_cols=72  Identities=14%  Similarity=0.165  Sum_probs=58.5

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcC
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRN  246 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~  246 (405)
                      ++..|.+=|.+.++.++..|..+|-.+++|- +..+..|...+.+..|++++.. .+..|+.+++..|-+-...
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  115 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA  115 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence            4556667778899999999999999999984 6688888899999999999975 4568888888777665443

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=90.36  E-value=1.7  Score=38.92  Aligned_cols=99  Identities=18%  Similarity=0.103  Sum_probs=74.1

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH-HcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015496          182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA  258 (405)
Q Consensus       182 lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vl-e~G~lp~Ll~LL~--s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g  258 (405)
                      ++...+.+-...+..+++.+-+.-|.+-..++ ..|.++.++.+..  +++..+...++-+|+..+-+  .....|+..+
T Consensus        51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~  128 (157)
T PF11701_consen   51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKN  128 (157)
T ss_dssp             HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHH
T ss_pred             HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence            44444455677899999999999999988877 5689999999998  66677888999999988753  4455677778


Q ss_pred             cHHHHHHhhcCCCccHH-HHHHHHHH
Q 015496          259 GDLMLQDILGNSSFEIR-LHRKAVSL  283 (405)
Q Consensus       259 Gi~~L~~lL~s~~~~~k-l~~kA~~l  283 (405)
                      |++.|..+++.+. +.. +|..|+-.
T Consensus       129 ~~~~L~~~~~~~~-~~~~ir~~A~v~  153 (157)
T PF11701_consen  129 YVSWLKELYKNSK-DDSEIRVLAAVG  153 (157)
T ss_dssp             CHHHHHHHTTTCC--HH-CHHHHHHH
T ss_pred             HHHHHHHHHcccc-chHHHHHHHHHH
Confidence            9999999997552 344 55555433

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=90.28  E-value=4.9  Score=34.82  Aligned_cols=72  Identities=17%  Similarity=0.104  Sum_probs=57.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-hHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCC
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNN  247 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~-~Q~~vle~G~lp~Ll~LL~s~---~~~v~~kAl~ALS~lir~~  247 (405)
                      +..|-+-|+++++.++..|..+|-.++.|-.. ++..|.....+..|++++...   +..++.+++.-|-+-...+
T Consensus        39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            44556667889999999999999999999755 778888878888899999763   4678888887776655443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=90.18  E-value=1.2  Score=40.01  Aligned_cols=148  Identities=14%  Similarity=0.153  Sum_probs=94.1

Q ss_pred             CHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 015496          175 GLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE  252 (405)
Q Consensus       175 gi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~  252 (405)
                      .+..++..|.  ...+++|..|.-++..+-   +..++.+.+ -.-..+-.++.....+-...++.+++.+--.-|....
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            3455666664  478899999999999884   334443322 1222333344333333567799999999887766655


Q ss_pred             HHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChH-HHHHHHH
Q 015496          253 MFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLD-LQEKALA  329 (405)
Q Consensus       253 ~f~-~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~-v~E~al~  329 (405)
                      .++ ..|-.+.+...+.....+..++..++-+++.=|.      ++..+ .++...+++.|-++++.+ |.. ++..|+-
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~------d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v  152 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI------DKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAV  152 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT------SHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc------cHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence            554 5677788888888332478899999999998774      33333 344456688888888544 444 6777776


Q ss_pred             HHHH
Q 015496          330 AIKN  333 (405)
Q Consensus       330 aL~~  333 (405)
                      +|..
T Consensus       153 ~L~K  156 (157)
T PF11701_consen  153 GLCK  156 (157)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.14  E-value=4.5  Score=44.43  Aligned_cols=43  Identities=19%  Similarity=0.245  Sum_probs=27.2

Q ss_pred             hHHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496          168 NDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       168 ~~~~~~Ggi~-~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      .|++..|+|. +++.+|+..+-.+-..|...|-.++.+||+.+.
T Consensus       180 pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk  223 (938)
T KOG1077|consen  180 PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK  223 (938)
T ss_pred             ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh
Confidence            3556666654 666777766666666666677777766665443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.95  E-value=33  Score=38.08  Aligned_cols=123  Identities=21%  Similarity=0.202  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC
Q 015496          149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS  228 (405)
Q Consensus       149 ~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~  228 (405)
                      +--.||.=|..++ -.|-|+|+.     +-++.+|+|+.|=+|..|.-++-.+.---|+.-.     -.+|+|.+-|.++
T Consensus       125 e~giAL~GLS~fv-TpdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDp  193 (877)
T KOG1059|consen  125 EVGLALSGLSCIV-TPDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDP  193 (877)
T ss_pred             hhhheeccccccc-CchhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCC
Confidence            3445666666554 457788765     4577889999999999999999887755454332     4789999999999


Q ss_pred             CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496          229 FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       229 ~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~  288 (405)
                      ++.|...|+..||-++|-+|.+.-.+     -|.+.++|.+.+ +.=+..|..-++.+|+
T Consensus       194 Dp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSs-NNWmLIKiiKLF~aLt  247 (877)
T KOG1059|consen  194 DPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSS-NNWVLIKLLKLFAALT  247 (877)
T ss_pred             CchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccC-CCeehHHHHHHHhhcc
Confidence            99999999999999999998764443     256666665442 3346677777888776

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=89.95  E-value=7.8  Score=42.27  Aligned_cols=145  Identities=17%  Similarity=0.102  Sum_probs=81.6

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496          135 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL----GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       135 ~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~----Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      .++.++-+-  +.+-+.-|||.|+.++-+.-....|++.    ..+..++..++ .++..+..++++|.|+..| |..++
T Consensus       548 ~~l~~l~~w--p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~  623 (745)
T KOG0301|consen  548 LALAILLQW--PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRE  623 (745)
T ss_pred             HHHHHHhcC--CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHH
Confidence            355554442  5677888999999999776555555552    23445555555 6788999999999999987 87888


Q ss_pred             HHHHcCcHHHHHHhhc---C-CCHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHHHHHHhhcC---CCccHHHHHHHHH
Q 015496          211 QVLELGALSKLMKMVK---S-SFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGN---SSFEIRLHRKAVS  282 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~---s-~~~~v~~kAl~ALS~lir~~~~~-~~~f~~~gGi~~L~~lL~s---~~~~~kl~~kA~~  282 (405)
                      .+...  +..++..+.   + ++..++    -|++.++-|+.-. .+.-.+.+|.+.|..++..   +..+..-.-+.+-
T Consensus       624 ~~~s~--~~~i~~~~~~~~s~~~knl~----ia~atlaln~sv~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~  697 (745)
T KOG0301|consen  624 LFMSR--LESILDPVIEASSLSNKNLQ----IALATLALNYSVLLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLV  697 (745)
T ss_pred             HHHHH--HHHHhhhhhhhhcccchhHH----HHHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            77654  333333221   1 112221    1222222111111 0011125677777666542   2123434456777


Q ss_pred             HHHHHhh
Q 015496          283 LVGDLAK  289 (405)
Q Consensus       283 lLs~L~~  289 (405)
                      ++.+|+.
T Consensus       698 AlgtL~t  704 (745)
T KOG0301|consen  698 ALGTLMT  704 (745)
T ss_pred             HHHhhcc
Confidence            7788874

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=89.90  E-value=12  Score=40.29  Aligned_cols=168  Identities=14%  Similarity=0.099  Sum_probs=96.3

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc----C
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ----N  204 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s----~~~~Ir~~Aa~~Lg~~aq----N  204 (405)
                      ++-..+.+.+...+..+...++-.+...+...+       ...+..+..++.+    +++-++..|.-.+|+++.    +
T Consensus       359 ~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~  431 (574)
T smart00638      359 LKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN  431 (574)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence            333444555566665556666666655543332       1134455566654    356788888888887764    3


Q ss_pred             ChHhHHHHHHcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc-CCCccHHHHHH
Q 015496          205 NPLVQKQVLELGALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG-NSSFEIRLHRK  279 (405)
Q Consensus       205 N~~~Q~~vle~G~lp~Ll~LL~s----~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~-s~~~~~kl~~k  279 (405)
                      ++.+...+ -...++.|.+.|..    .+...+.-++-||||+  +++..         +..|..++. +...+..+|.-
T Consensus       432 ~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~~~~---------i~~l~~~l~~~~~~~~~iR~~  499 (574)
T smart00638      432 TPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--GHPSS---------IKVLEPYLEGAEPLSTFIRLA  499 (574)
T ss_pred             CCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--CChhH---------HHHHHHhcCCCCCCCHHHHHH
Confidence            33332222 23466777776643    2334466789999998  34543         344444454 33356789999


Q ss_pred             HHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHHH
Q 015496          280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIK  332 (405)
Q Consensus       280 A~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~--~D~~v~E~al~aL~  332 (405)
                      |++++..++..     .+        ..+-+.+..+..+  .++++|-.|..+|.
T Consensus       500 Av~Alr~~a~~-----~p--------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm  541 (574)
T smart00638      500 AILALRNLAKR-----DP--------RKVQEVLLPIYLNRAEPPEVRMAAVLVLM  541 (574)
T ss_pred             HHHHHHHHHHh-----Cc--------hHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence            99999988742     22        1233344445443  47788877765443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.86  E-value=2.9  Score=48.05  Aligned_cols=142  Identities=13%  Similarity=0.106  Sum_probs=104.4

Q ss_pred             CCHHHH-HHhcC----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC
Q 015496          174 GGLSVL-VGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNN  247 (405)
Q Consensus       174 Ggi~~L-v~lL~----s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir~~  247 (405)
                      |-+.|+ +...+    .++|++|..|.-+++.+.-=..+    |- .-.+|.|+..+. ++++-+|..++-|+|-++--+
T Consensus       918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fc-es~l~llftimeksp~p~IRsN~VvalgDlav~f  992 (1251)
T KOG0414|consen  918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FC-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF  992 (1251)
T ss_pred             HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HH-HHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence            445555 45554    36899999999999998752221    11 246799999997 666788999999999887777


Q ss_pred             hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHH
Q 015496          248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKA  327 (405)
Q Consensus       248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~a  327 (405)
                      |...+.+-     +.|-.-|.+.  +..+|+.|.-.+++|..+      .    .+.-.|.+..++.+|..++..+.+.|
T Consensus       993 pnlie~~T-----~~Ly~rL~D~--~~~vRkta~lvlshLILn------d----miKVKGql~eMA~cl~D~~~~IsdlA 1055 (1251)
T KOG0414|consen  993 PNLIEPWT-----EHLYRRLRDE--SPSVRKTALLVLSHLILN------D----MIKVKGQLSEMALCLEDPNAEISDLA 1055 (1251)
T ss_pred             ccccchhh-----HHHHHHhcCc--cHHHHHHHHHHHHHHHHh------h----hhHhcccHHHHHHHhcCCcHHHHHHH
Confidence            76655543     4555556765  677899999999999853      1    45556999999999999999999888


Q ss_pred             HHHHHHHhcC
Q 015496          328 LAAIKNLLQL  337 (405)
Q Consensus       328 l~aL~~L~~~  337 (405)
                      =.....|..-
T Consensus      1056 k~FF~Els~k 1065 (1251)
T KOG0414|consen 1056 KSFFKELSSK 1065 (1251)
T ss_pred             HHHHHHhhhc
Confidence            7555555543

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=89.56  E-value=5.6  Score=34.58  Aligned_cols=71  Identities=15%  Similarity=0.233  Sum_probs=56.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcC
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRN  246 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~LL~s~~--~~v~~kAl~ALS~lir~  246 (405)
                      +..|-+=|+++++.++..|..+|-.+++| -+.+...|...+.+..|..++.+..  +.|+.+++..+.+-...
T Consensus        39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~  112 (133)
T smart00288       39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA  112 (133)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence            34456667889999999999999999999 4668888888899999999998754  33888888777765443

Unpublished observations. Domain of unknown function.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.37  E-value=4.4  Score=36.50  Aligned_cols=115  Identities=15%  Similarity=0.106  Sum_probs=79.0

Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015496          216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE  293 (405)
Q Consensus       216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG--i~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~  293 (405)
                      ..+..+..+|++++...|-.++.-+..++..++  .+.|.++++  +..|..+|+.+ .+..++.-++.++..|...-  
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~--   99 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLI--   99 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh--
Confidence            355678899999888888888888888887654  355655554  46777778875 46778889999999997532  


Q ss_pred             cCCCCcchhHHhC---CcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          294 NMHKVEPPLFRDR---FFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       294 ~~~~~~~~~l~~~---g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      ..-++....+...   ++++.++.++..  ..+.+.++.+|..+...
T Consensus       100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            1223322222221   556666666654  57888999999988764

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=89.27  E-value=1.7  Score=48.65  Aligned_cols=120  Identities=12%  Similarity=0.124  Sum_probs=83.6

Q ss_pred             hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH-h-cCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496          206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY-V-EAGDLMLQDILGNSSFEIRLHRKAVSL  283 (405)
Q Consensus       206 ~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~-~-~gGi~~L~~lL~s~~~~~kl~~kA~~l  283 (405)
                      +-.++.+. ...+|.|++.+.+.+...+-.-+-+||..+.|-|.  +.+. + ..-+++|++.|+-+  |..+|..+..+
T Consensus       858 iLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~--D~~v~vstl~~  932 (1030)
T KOG1967|consen  858 ILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMP--DVIVRVSTLRT  932 (1030)
T ss_pred             HHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCC--ccchhhhHhhh
Confidence            33444443 46889999999866667788889999999987654  2222 2 34578888888876  56678899999


Q ss_pred             HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC---hHHHHHHHHHHHHHhc
Q 015496          284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD---LDLQEKALAAIKNLLQ  336 (405)
Q Consensus       284 Ls~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D---~~v~E~al~aL~~L~~  336 (405)
                      +..+...     .+..... .-.-++|.+..+=.+.|   .-+|+.|+.+|..|+.
T Consensus       933 i~~~l~~-----~~tL~t~-~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~  982 (1030)
T KOG1967|consen  933 IPMLLTE-----SETLQTE-HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTR  982 (1030)
T ss_pred             hhHHHHh-----ccccchH-HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc
Confidence            9998753     2211111 11257788877755555   6799999999999987

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=89.12  E-value=16  Score=37.49  Aligned_cols=121  Identities=12%  Similarity=0.054  Sum_probs=84.2

Q ss_pred             HHHHHHHHhc---CChHhHHHHHH-cCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHh
Q 015496          194 SAWILGKASQ---NNPLVQKQVLE-LGALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI  266 (405)
Q Consensus       194 Aa~~Lg~~aq---NN~~~Q~~vle-~G~lp~Ll~LL~s~~---~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~l  266 (405)
                      -...|..+.+   ++...-..+++ ...+..|-.++++..   ..+-..|+..++.++.+.|.....+.+.|-++.+++.
T Consensus        80 lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~  159 (379)
T PF06025_consen   80 LLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDA  159 (379)
T ss_pred             HHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHH
Confidence            3345555555   44444444556 334445556666654   4567789999999999999999999999999988888


Q ss_pred             hc-CCC-ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC
Q 015496          267 LG-NSS-FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD  320 (405)
Q Consensus       267 L~-s~~-~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D  320 (405)
                      +. .+- ....+..-.-.+++.||-      +..-.+.+.+.+.++.+.+++.+++
T Consensus       160 i~~~~i~~s~e~l~~lP~~l~AicL------N~~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  160 ITAKGILPSSEVLTSLPNVLSAICL------NNRGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HhccCCCCcHHHHHHHHHHHhHHhc------CHHHHHHHHhcChHHHHHHHhCCHH
Confidence            87 321 234456666677888884      4455667888888888888877653

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.09  E-value=7.1  Score=41.22  Aligned_cols=118  Identities=19%  Similarity=0.278  Sum_probs=71.4

Q ss_pred             HHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHH
Q 015496          169 DLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSS  242 (405)
Q Consensus       169 ~~~~~Ggi~~Lv~lL----~s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll-~LL~s~~~~v~~kAl~ALS~  242 (405)
                      .+-+.|.+.-++..|    ..++..+|..|+.+|++.+..-| +++...  .-.+..++ .|.+..+.+|.-.|+-+|-.
T Consensus       249 ~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~--~~~ldaii~gL~D~~~~~V~leam~~Lt~  326 (533)
T KOG2032|consen  249 ELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK--TTQLDAIIRGLYDDLNEEVQLEAMKCLTM  326 (533)
T ss_pred             cccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH--HHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            344677777666544    25788999999999999999844 222211  12333344 34444456776666666665


Q ss_pred             HhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          243 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       243 lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      +..--..-.-.++=.+..--+..+..+.  +.++|..|.+++..|+.-
T Consensus       327 v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~l  372 (533)
T KOG2032|consen  327 VLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAKL  372 (533)
T ss_pred             HHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHHH
Confidence            5432111111122234445666777775  567888999999999853

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=89.01  E-value=24  Score=34.58  Aligned_cols=162  Identities=17%  Similarity=0.161  Sum_probs=82.2

Q ss_pred             CHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH------hc-
Q 015496          175 GLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL------IR-  245 (405)
Q Consensus       175 gi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~l------ir-  245 (405)
                      .++.|+.-|.  +..|-||-.|+.+||.+..  +         ..++.|-++.+.+..+++.-+..||-.+      .. 
T Consensus        68 Av~~l~~vl~desq~pmvRhEAaealga~~~--~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~  136 (289)
T KOG0567|consen   68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD--P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI  136 (289)
T ss_pred             hhHHHHHHhcccccchHHHHHHHHHHHhhcc--h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence            5788888664  5779999999999999873  2         2334444555444334433232222221      11 


Q ss_pred             --------CChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch----h-ccC-CCC--cc-------hh
Q 015496          246 --------NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----L-ENM-HKV--EP-------PL  302 (405)
Q Consensus       246 --------~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~----~-~~~-~~~--~~-------~~  302 (405)
                              .+|...   ...+-+.-|...|.+.+...--|..|.|.|.|+-.+.    + +.. .++  ++       ..
T Consensus       137 ~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQ  213 (289)
T KOG0567|consen  137 ANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQ  213 (289)
T ss_pred             cccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence                    011111   0111233333333333223333445666665552110    0 000 000  00       01


Q ss_pred             HHhCCcHHHHHHhccC--CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCch
Q 015496          303 FRDRFFLKSVVDLTAS--ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD  352 (405)
Q Consensus       303 l~~~g~l~~Lv~LL~~--~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~  352 (405)
                      +...-.++.|.+.|..  .++-+|--|+.||+.++.  +++..++.+..|-+
T Consensus       214 l~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~~~~vL~e~~~D~  263 (289)
T KOG0567|consen  214 LQSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--EDCVEVLKEYLGDE  263 (289)
T ss_pred             ccchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HHHHHHHHHHcCCc
Confidence            1123346777777654  477888999999999985  56777776555543

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=88.91  E-value=3  Score=36.44  Aligned_cols=69  Identities=20%  Similarity=0.253  Sum_probs=55.4

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCC-HH---HHHHHHHHHHHH
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VE---EAVKALYTVSSL  243 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s~~-~~---v~~kAl~ALS~l  243 (405)
                      ++..|-+-|.++++.++..|..+|-.+++|- +.++..|.....+..|.+++.+.. ..   |+.+++--|..-
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W  116 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEW  116 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHH
Confidence            3455677788999999999999999999996 678888888889999999987644 33   788877655543

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=88.86  E-value=14  Score=39.75  Aligned_cols=119  Identities=15%  Similarity=0.138  Sum_probs=70.7

Q ss_pred             CHHHHHHhcC----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CC--CHHHHHHHHHHHHHHhcCC
Q 015496          175 GLSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS--FVEEAVKALYTVSSLIRNN  247 (405)
Q Consensus       175 gi~~Lv~lL~----s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~-s~--~~~v~~kAl~ALS~lir~~  247 (405)
                      .++.+...|.    ..+.+-+..+..+|||+..-           ..++.|...+. +.  +..+|..|+|||..++..+
T Consensus       443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~  511 (574)
T smart00638      443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD  511 (574)
T ss_pred             HHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence            4455555443    24555566777777777642           23455666665 22  3568999999999887665


Q ss_pred             hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHH
Q 015496          248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEK  326 (405)
Q Consensus       248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~  326 (405)
                      +..        .-+.|..++.+...+..+|.-|..++-. +       +|       ...++..++..+..+ +..|.-.
T Consensus       512 p~~--------v~~~l~~i~~n~~e~~EvRiaA~~~lm~-t-------~P-------~~~~l~~ia~~l~~E~~~QV~sf  568 (574)
T smart00638      512 PRK--------VQEVLLPIYLNRAEPPEVRMAAVLVLME-T-------KP-------SVALLQRIAELLNKEPNLQVASF  568 (574)
T ss_pred             chH--------HHHHHHHHHcCCCCChHHHHHHHHHHHh-c-------CC-------CHHHHHHHHHHHhhcCcHHHHHH
Confidence            543        2356677777655566677666554433 2       22       134666777777664 4445443


Q ss_pred             H
Q 015496          327 A  327 (405)
Q Consensus       327 a  327 (405)
                      +
T Consensus       569 v  569 (574)
T smart00638      569 V  569 (574)
T ss_pred             h
Confidence            3

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.78  E-value=0.74  Score=52.23  Aligned_cols=127  Identities=20%  Similarity=0.209  Sum_probs=88.0

Q ss_pred             HHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc
Q 015496          238 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA  317 (405)
Q Consensus       238 ~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~  317 (405)
                      -.|-.+++++..++..|.+++|+.+|+.++-++    .-|.-.+.+++.|...     ++.    -+.+..+-++|+.|+
T Consensus       664 DcLisllKnnteNqklFreanGvklilpflind----ehRSslLrivscLitv-----dpk----qvhhqelmalVdtLk  730 (2799)
T KOG1788|consen  664 DCLISLLKNNTENQKLFREANGVKLILPFLIND----EHRSSLLRIVSCLITV-----DPK----QVHHQELMALVDTLK  730 (2799)
T ss_pred             HHHHHHHhccchhhHHHHhhcCceEEEEeeech----HHHHHHHHHHHHHhcc-----Ccc----cccHHHHHHHHHHHH
Confidence            356678999999999999999999999998654    2466777888888753     332    112344556666666


Q ss_pred             CC------------ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH--HHHHHhhhchhhhhhHHH
Q 015496          318 SA------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR--QQLQEVMLEEDQRDYAMD  377 (405)
Q Consensus       318 ~~------------D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~--~~~~~l~~~~~q~~~~~d  377 (405)
                      ++            ..+.....+.+++.+.......+.+|++.+|..-++..|.  ++..+++.+.||+.|..-
T Consensus       731 sgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyikl  804 (2799)
T KOG1788|consen  731 SGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKL  804 (2799)
T ss_pred             hcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHH
Confidence            52            2345667778888888666667788887777766665554  344667776668888733

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=88.75  E-value=4.3  Score=35.97  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN  247 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~  247 (405)
                      .+..|.+=|.+.++.++..|..+|-++++|.. .++..|.....+..|++++.. .+..|+.+.+.-|-.-...+
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence            34556666778999999999999999999966 477778888999999999988 56788888887776654443

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=88.71  E-value=20  Score=42.69  Aligned_cols=145  Identities=12%  Similarity=0.160  Sum_probs=95.4

Q ss_pred             CHHHHHHHHHHHhhcCCC--------C-HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHH
Q 015496          128 SDAQLIQIAIDDLNNSTL--------S-LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWIL  198 (405)
Q Consensus       128 ~d~~lmk~al~~L~~~~~--------t-~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~L  198 (405)
                      ..-..||-.+..+...+.        + --+.-.|.....++...-...+.|-.  -+..++..|..+...+|..|..||
T Consensus       763 ~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD~--yLk~Il~~l~e~~ialRtkAlKcl  840 (1692)
T KOG1020|consen  763 TVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFDP--YLKLILSVLGENAIALRTKALKCL  840 (1692)
T ss_pred             hhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhHH--HHHHHHHHhcCchHHHHHHHHHHH
Confidence            344556666666654320        0 01122333444444444444444432  366777888999999999999999


Q ss_pred             HHHhcCC------hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCc
Q 015496          199 GKASQNN------PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF  272 (405)
Q Consensus       199 g~~aqNN------~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~  272 (405)
                      +.++.-.      |.+|..|.         .-+.+.+..||..|+--+|..+-.++....+++     +.+..-+.++  
T Consensus       841 S~ive~Dp~vL~~~dvq~~Vh---------~R~~DssasVREAaldLvGrfvl~~~e~~~qyY-----~~i~erIlDt--  904 (1692)
T KOG1020|consen  841 SMIVEADPSVLSRPDVQEAVH---------GRLNDSSASVREAALDLVGRFVLSIPELIFQYY-----DQIIERILDT--  904 (1692)
T ss_pred             HHHHhcChHhhcCHHHHHHHH---------HhhccchhHHHHHHHHHHhhhhhccHHHHHHHH-----HHHHhhcCCC--
Confidence            9999764      45555443         334445678999999999988887887777775     3444445544  


Q ss_pred             cHHHHHHHHHHHHHHhhc
Q 015496          273 EIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       273 ~~kl~~kA~~lLs~L~~~  290 (405)
                      .+.+|+++...+..+|..
T Consensus       905 gvsVRKRvIKIlrdic~e  922 (1692)
T KOG1020|consen  905 GVSVRKRVIKILRDICEE  922 (1692)
T ss_pred             chhHHHHHHHHHHHHHHh
Confidence            577999999999999964

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=88.50  E-value=7.7  Score=39.25  Aligned_cols=173  Identities=11%  Similarity=0.060  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC---cHHHHHHh
Q 015496          148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKM  224 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G---~lp~Ll~L  224 (405)
                      |--..+-.-|++++....-|.-+.....+..+.++...++=+|-..|..++..+-..++..-..++..+   .+...-.|
T Consensus       138 dial~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~L  217 (335)
T PF08569_consen  138 DIALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKL  217 (335)
T ss_dssp             TTHHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566666666555566666666677788888889999999999999999999998888888764   46678889


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcC--ChhhHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcch
Q 015496          225 VKSSFVEEAVKALYTVSSLIRN--NLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP  301 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~--~~~~~~~f~~-~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~  301 (405)
                      |.+++=-++.+++--||.++-+  |-.....++. ..-+..++.+|+++  +..+|..|...+-=++.++  +-++....
T Consensus       218 l~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~--sk~Iq~eAFhvFKvFVANp--~K~~~I~~  293 (335)
T PF08569_consen  218 LESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK--SKNIQFEAFHVFKVFVANP--NKPPPIVD  293 (335)
T ss_dssp             CT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHH-S--S-BHHHHH
T ss_pred             ccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc--chhhhHHHHHHHHHHHhCC--CCChHHHH
Confidence            9998877899999999998865  3333344443 45678889999987  4568999998888887642  22233444


Q ss_pred             hHHhC--CcHHHHHHhccCC--ChHHH
Q 015496          302 LFRDR--FFLKSVVDLTASA--DLDLQ  324 (405)
Q Consensus       302 ~l~~~--g~l~~Lv~LL~~~--D~~v~  324 (405)
                      .+..+  .++..+-++....  |.++.
T Consensus       294 iL~~Nr~kLl~fl~~f~~~~~~D~qf~  320 (335)
T PF08569_consen  294 ILIKNREKLLRFLKDFHTDRTDDEQFE  320 (335)
T ss_dssp             HHHHTHHHHHHHHHTTTTT--S-CHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCccccHH
Confidence            44433  5555555554433  44444

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=88.39  E-value=4.1  Score=44.07  Aligned_cols=165  Identities=14%  Similarity=0.097  Sum_probs=88.0

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChHh----
Q 015496          137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPLV----  208 (405)
Q Consensus       137 l~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s----~~~~Ir~~Aa~~Lg~~aqNN~~~----  208 (405)
                      ++.+.+...+..+....+-.|...+...+  ..     .+..+..++++    .++.++..|.-.+|+++...-..    
T Consensus       401 ~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt--~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~  473 (618)
T PF01347_consen  401 KDLIKSKKLTDDEAAQLLASLPFHVRRPT--EE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA  473 (618)
T ss_dssp             HHHHHTT-S-HHHHHHHHHHHHHT-------HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhhcCCCC--HH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc
Confidence            33444455565666666666666552322  11     23344455543    46778888888888887431111    


Q ss_pred             -----HHHHHHcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC-CccHHHHH
Q 015496          209 -----QKQVLELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-SFEIRLHR  278 (405)
Q Consensus       209 -----Q~~vle~G~lp~Ll~LL~----s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~-~~~~kl~~  278 (405)
                           ....+....++.|...+.    ..+...+..++.||+|+  +++.         .++.|..++.+. ..+..+|.
T Consensus       474 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~~---------~i~~l~~~i~~~~~~~~~~R~  542 (618)
T PF01347_consen  474 EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHPE---------SIPVLLPYIEGKEEVPHFIRV  542 (618)
T ss_dssp             -------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-GG---------GHHHHHTTSTTSS-S-HHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCch---------hhHHHHhHhhhccccchHHHH
Confidence                 011222346677777666    23345678899999998  3343         456667766654 34677888


Q ss_pred             HHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHHH
Q 015496          279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIK  332 (405)
Q Consensus       279 kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~--~D~~v~E~al~aL~  332 (405)
                      .|++++..++..     .+        ..+.+.+..+..+  .++++|-.|..+|.
T Consensus       543 ~Ai~Alr~~~~~-----~~--------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm  585 (618)
T PF01347_consen  543 AAIQALRRLAKH-----CP--------EKVREILLPIFMNTTEDPEVRIAAYLILM  585 (618)
T ss_dssp             HHHHTTTTGGGT------H--------HHHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc-----Cc--------HHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence            999998877532     11        2234455555544  37788877764443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=88.30  E-value=8.1  Score=44.22  Aligned_cols=185  Identities=16%  Similarity=0.127  Sum_probs=101.5

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH---HHHHh--cCc
Q 015496          185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ---EMFYV--EAG  259 (405)
Q Consensus       185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~---~~f~~--~gG  259 (405)
                      |=++.+|+.|||+|..++.-.|+.    +..+.+|+|++...+.+...+.-+.-|.+.++.+.....   ..+.+  ..|
T Consensus       555 HWd~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~  630 (1133)
T KOG1943|consen  555 HWDVKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG  630 (1133)
T ss_pred             cccHHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence            458999999999999999866643    345789999999988888888777777777766533222   11111  122


Q ss_pred             HHHHHHh-----hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496          260 DLMLQDI-----LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL  334 (405)
Q Consensus       260 i~~L~~l-----L~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L  334 (405)
                      +.-++.-     +..+. ...++.-.+..+..+..     ........+.-.++-.-+.+.+..++ .+++.+.++++.+
T Consensus       631 l~~ii~~~~~~~~~rg~-~~lmr~~~~~~Ie~~s~-----s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l  703 (1133)
T KOG1943|consen  631 LLSIIPPICDRYFYRGQ-GTLMRQATLKFIEQLSL-----SKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDL  703 (1133)
T ss_pred             hhhhccHHHHHHhccch-HHHHHHHHHHHHHHhhh-----ccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHH
Confidence            2111111     11111 12344445555555442     22233334444556666666665555 7888888888877


Q ss_pred             hcCChhhHHHHHhcCCchHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHH
Q 015496          335 LQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREV  385 (405)
Q Consensus       335 ~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~~~~~q~~~~~d~~~l~~e~  385 (405)
                      .+-     ....+++-..+...+...+......+-.-.-+..+++.|+.|-
T Consensus       704 ~s~-----y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~  749 (1133)
T KOG1943|consen  704 VST-----YVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSEL  749 (1133)
T ss_pred             HHH-----HHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh
Confidence            641     2222122222333444444333222222334666777777543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.25  E-value=0.7  Score=50.06  Aligned_cols=75  Identities=17%  Similarity=0.235  Sum_probs=65.3

Q ss_pred             hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015496          167 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN  246 (405)
Q Consensus       167 A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~  246 (405)
                      +..++..|.--.+|.-|...--+||..|...++.++++.|.....     ++..|+++++++-+.||.+|+++|-.|+.|
T Consensus       366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            456778888888998888888999999999999999999987764     567899999988889999999999888765

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=88.19  E-value=3.4  Score=44.72  Aligned_cols=120  Identities=13%  Similarity=0.101  Sum_probs=73.5

Q ss_pred             CHHHHHHhcC----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCC
Q 015496          175 GLSVLVGQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNN  247 (405)
Q Consensus       175 gi~~Lv~lL~----s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~---~~~v~~kAl~ALS~lir~~  247 (405)
                      .++.|...|.    ..+.+-+..+..+|||+..  |         ..++.|..++...   +..+|..|+||+..+...+
T Consensus       487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~  555 (618)
T PF01347_consen  487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC  555 (618)
T ss_dssp             GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence            4555555554    3566778888888888864  2         4678888888876   3578999999999887766


Q ss_pred             hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHH
Q 015496          248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEK  326 (405)
Q Consensus       248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~  326 (405)
                      +.-        ..+.|..++.+...+..+|.-|..+|-. +       +|       ....+..++..+..+ +..|.-.
T Consensus       556 ~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~-~-------~P-------~~~~l~~i~~~l~~E~~~QV~sf  612 (618)
T PF01347_consen  556 PEK--------VREILLPIFMNTTEDPEVRIAAYLILMR-C-------NP-------SPSVLQRIAQSLWNEPSNQVASF  612 (618)
T ss_dssp             HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH-T-----------------HHHHHHHHHHHTT-S-HHHHHH
T ss_pred             cHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh-c-------CC-------CHHHHHHHHHHHhhCchHHHHHH
Confidence            643        3466777777665566677666544433 2       22       134677777777654 5555544


Q ss_pred             HH
Q 015496          327 AL  328 (405)
Q Consensus       327 al  328 (405)
                      +.
T Consensus       613 v~  614 (618)
T PF01347_consen  613 VY  614 (618)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=87.67  E-value=8.9  Score=41.13  Aligned_cols=153  Identities=12%  Similarity=0.134  Sum_probs=109.1

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhcCChhhHHH
Q 015496          178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV----EEAVKALYTVSSLIRNNLAGQEM  253 (405)
Q Consensus       178 ~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~----~v~~kAl~ALS~lir~~~~~~~~  253 (405)
                      .+...+.+++..-|..|..-+..+... +..-+.|+...++..|.+++.++..    .+....+.|.|.+.-+.-...+.
T Consensus        87 ~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~  165 (713)
T KOG2999|consen   87 RIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWES  165 (713)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeee
Confidence            455667778888888888888888764 7778889999999999999988753    46778899999988775433332


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496          254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN  333 (405)
Q Consensus       254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~  333 (405)
                      +- ..++.-...+.+-...+..+-..|+..+-++..     .++.....+.++--+..|+..|...|..++.+|...+..
T Consensus       166 ~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl-----~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  166 VS-NDFVVSMASYVNAKREDANTLLAALQMLESLVL-----GSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA  239 (713)
T ss_pred             cc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHh-----CChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            22 223333333333222344456678888888774     244456677788889999999999999999988887777


Q ss_pred             HhcC
Q 015496          334 LLQL  337 (405)
Q Consensus       334 L~~~  337 (405)
                      |...
T Consensus       240 l~~~  243 (713)
T KOG2999|consen  240 LFRK  243 (713)
T ss_pred             HHhh
Confidence            6644

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=87.42  E-value=6.4  Score=38.79  Aligned_cols=112  Identities=17%  Similarity=0.048  Sum_probs=78.5

Q ss_pred             CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015496          216 GALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN  294 (405)
Q Consensus       216 G~lp~Ll-~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~  294 (405)
                      +.+..|+ .-+++++..+|..|+-+||-.+=-+......     .++.+...++.+  +..++..|+.++.++....   
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~---   95 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKD--DEEVKITALKALFDLLLTH---   95 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc---
Confidence            4555555 6677888899999998888654444432222     246777778554  6778999999999998632   


Q ss_pred             CCCCcch-------hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          295 MHKVEPP-------LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       295 ~~~~~~~-------~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                       +....+       ......+++.+.+.|.+.+++++..++..++.|.-.+
T Consensus        96 -g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen   96 -GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             -CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence             111111       1223568888889999999999999999999987553

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=87.17  E-value=2.9  Score=34.22  Aligned_cols=72  Identities=15%  Similarity=0.136  Sum_probs=55.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA  249 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~  249 (405)
                      +...+..|+++.+.+|.++...|..+...+.  ....-..+.+..++..|+++++-+--.|+-+++.++.-+|.
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            3456677889999999999999999999776  11122246778888899888877877888888888877664

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.80  E-value=16  Score=41.14  Aligned_cols=189  Identities=13%  Similarity=0.090  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ  209 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q  209 (405)
                      .+...+++..+.++.  +.-|..++..|..++++-+-+..+..-|.+...+..|++.++=+=-.|...+..++.      
T Consensus       726 ~e~~qeai~sl~d~q--vpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce------  797 (982)
T KOG4653|consen  726 IEPLQEAISSLHDDQ--VPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE------  797 (982)
T ss_pred             HHHHHHHHHHhcCCc--ccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH------
Confidence            355666777776654  345788999999999988878888888999999999999888888888887777774      


Q ss_pred             HHHHHcCcHHHHHH-hhcCCC---HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015496          210 KQVLELGALSKLMK-MVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  285 (405)
Q Consensus       210 ~~vle~G~lp~Ll~-LL~s~~---~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs  285 (405)
                        +.....+|.|.+ ..++..   .+.+-+.=-||..+++--.+....+.+ --+...+..++++  +...|..++..+.
T Consensus       798 --vy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep--d~~~RaSS~a~lg  872 (982)
T KOG4653|consen  798 --VYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP--DHEFRASSLANLG  872 (982)
T ss_pred             --hcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc--hHHHHHhHHHHHH
Confidence              356688899988 444332   233444445666655543332222221 1122223333443  6778999999999


Q ss_pred             HHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcC
Q 015496          286 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       286 ~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~  337 (405)
                      +||.-    ......+.+.  .++..++.+...+ .+-+|..|...+..+..+
T Consensus       873 ~Lcq~----~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~  919 (982)
T KOG4653|consen  873 QLCQL----LAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNG  919 (982)
T ss_pred             HHHHH----HhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence            99952    1111111222  2455566666655 677888888888888864

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=86.77  E-value=2.3  Score=39.55  Aligned_cols=148  Identities=17%  Similarity=0.083  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHhcCChhhHHHHH---------------hcCcHHHHHHhhcC---CC-ccHHHHHHHHHHHHHHhhch
Q 015496          231 EEAVKALYTVSSLIRNNLAGQEMFY---------------VEAGDLMLQDILGN---SS-FEIRLHRKAVSLVGDLAKCQ  291 (405)
Q Consensus       231 ~v~~kAl~ALS~lir~~~~~~~~f~---------------~~gGi~~L~~lL~s---~~-~~~kl~~kA~~lLs~L~~~~  291 (405)
                      ...-.++--|||+.|....+...+-               +...+..|+.++..   .. ....--...++++.|+.+  
T Consensus        10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~--   87 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ--   87 (192)
T ss_pred             chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC--
Confidence            3455677778888775444332221               12245666666543   10 011113457888888875  


Q ss_pred             hccCCCCcchhHHhC--Cc--HHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhc-CCchHHHHHHHHHHHHhh
Q 015496          292 LENMHKVEPPLFRDR--FF--LKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVM  366 (405)
Q Consensus       292 ~~~~~~~~~~~l~~~--g~--l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~-~Gl~~~L~~L~~~~~~l~  366 (405)
                          .++.+..|.+.  +.  +..|+.++.+.+.--|.-++.+|.|++-....|...+..+ ..+.|.|-.-..+.++.-
T Consensus        88 ----~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaGpEe~d  163 (192)
T PF04063_consen   88 ----LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAGPEELD  163 (192)
T ss_pred             ----CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccCCCcCC
Confidence                35666677654  44  8889999998887788899999999998766565555533 455555444433423221


Q ss_pred             hchhhhhhHHHHHHHHHHHHHHHhhh
Q 015496          367 LEEDQRDYAMDVEALRREVELIFFRK  392 (405)
Q Consensus       367 ~~~~q~~~~~d~~~l~~e~~~~~~~k  392 (405)
                      .        .|.+.++.+.|++...|
T Consensus       164 ~--------ee~~~lp~~LQ~L~~dK  181 (192)
T PF04063_consen  164 E--------EEMEKLPPELQLLPPDK  181 (192)
T ss_pred             H--------HHHHcCCHHHhhcCCCC
Confidence            1        24677888888777766

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.70  E-value=31  Score=33.23  Aligned_cols=98  Identities=15%  Similarity=0.124  Sum_probs=72.6

Q ss_pred             HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-----CCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHh
Q 015496          151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-----HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKM  224 (405)
Q Consensus       151 ~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~-----s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll~L  224 (405)
                      ..||.-|.-++...+....|.+...=--+..+|+     ++.+-+|..+..+||.+++|.. ++-........+|.++++
T Consensus       118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            5677777778888888778877653223335553     2457899999999999999854 444444566899999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCh
Q 015496          225 VKSSFVEEAVKALYTVSSLIRNNL  248 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~~~  248 (405)
                      ...+++--+.-|++-+.-++.+..
T Consensus       198 me~gSElSktvaifI~qkil~dDv  221 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGDDV  221 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhccch
Confidence            999887667778888888877654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.56  E-value=1.3  Score=47.97  Aligned_cols=104  Identities=15%  Similarity=0.139  Sum_probs=72.4

Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      .++.+|+-..++.=|.++--+||..|+++++.++-+.|....     -.+..|+..+++.  ..-+|.+|.+++..++.+
T Consensus       368 siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE--~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  368 SIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDE--IEVVRLKAIFALTMISVH  440 (823)
T ss_pred             ccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccH--HHHHHHHHHHHHHHHHHH
Confidence            356667778888888766678999999999999988776433     2568999999986  445788999999999853


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496          291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK  332 (405)
Q Consensus       291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~  332 (405)
                      -           .++...++.+.+.|....+++++.....|.
T Consensus       441 l-----------~i~eeql~~il~~L~D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  441 L-----------AIREEQLRQILESLEDRSVDVREALRELLK  471 (823)
T ss_pred             h-----------eecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            1           122344555555555555556554444333

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.52  E-value=72  Score=37.25  Aligned_cols=169  Identities=14%  Similarity=0.124  Sum_probs=104.1

Q ss_pred             HHHhHHHHHHHH-HHcCC-C-CHHHHHHHHHHHhhcCC--CCHHHH-HHHHHHHHHccCCCCc--hhHHHhcCCHHHHHH
Q 015496          110 LKKRQMEIKELM-EKLKT-P-SDAQLIQIAIDDLNNST--LSLEDS-QRALQELLILVEPIDN--ANDLSKLGGLSVLVG  181 (405)
Q Consensus       110 l~~r~~~L~~a~-~~~~~-~-~d~~lmk~al~~L~~~~--~t~e~k-~~AL~~L~~Lve~iDn--A~~~~~~Ggi~~Lv~  181 (405)
                      +..|..+|+... +-+.. | +.....+.++..+....  .-...+ ..-|+.+.-++.-.++  ...+.      .+..
T Consensus       587 l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~------~v~~  660 (1176)
T KOG1248|consen  587 LASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF------TVDP  660 (1176)
T ss_pred             HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH------HhhH
Confidence            445888888776 33332 2 23445566555544322  111122 2234444434333332  22222      4444


Q ss_pred             h-cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015496          182 Q-LNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA  258 (405)
Q Consensus       182 l-L~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~--G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g  258 (405)
                      . .++.+..+|..+-.+|..+.+. |.++..+.+.  .....|.+-+++.+...+..++-+|+.+++.++.-...|+-..
T Consensus       661 ~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~  739 (1176)
T KOG1248|consen  661 EFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL  739 (1176)
T ss_pred             HhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3 4567999999999999999997 6555554432  3445555666666667889999999999998875555566555


Q ss_pred             cHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496          259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       259 Gi~~L~~lL~s~~~~~kl~~kA~~lLs~L~  288 (405)
                      ..++++.. +..  +.+.|+.|.-+|..++
T Consensus       740 I~EvIL~~-Ke~--n~~aR~~Af~lL~~i~  766 (1176)
T KOG1248|consen  740 IPEVILSL-KEV--NVKARRNAFALLVFIG  766 (1176)
T ss_pred             HHHHHHhc-ccc--cHHHHhhHHHHHHHHH
Confidence            66666655 543  6788999999999998

>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels

Probab=86.48  E-value=2.3  Score=39.56  Aligned_cols=96  Identities=16%  Similarity=0.203  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh
Q 015496          188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL  267 (405)
Q Consensus       188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL  267 (405)
                      ..+-..+..+|...+.+|+++|..+.++  ++.++..+.......-..+...+..+.++|+.....+.+.. +..++.++
T Consensus        75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll  151 (207)
T PF01365_consen   75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL  151 (207)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence            4677899999999999999999999875  44334443332222223467778889999999888887665 88888888


Q ss_pred             cCCCccHHHHHHHHHHHHHHhhc
Q 015496          268 GNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       268 ~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      ...+    -+.+-+-+++.||..
T Consensus       152 ~~~g----r~~~~L~~L~~lc~~  170 (207)
T PF01365_consen  152 RKHG----RQPRYLDFLSSLCVC  170 (207)
T ss_dssp             -----------------------
T ss_pred             HHcC----CChHHHHHHhhhccc
Confidence            7632    234567778888864

They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=86.08  E-value=40  Score=33.82  Aligned_cols=210  Identities=13%  Similarity=0.099  Sum_probs=131.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhc-CChHhHHHHHHc-----CcHHHHHHhhcCC--C--------HHHHHHHH-H
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQ-NNPLVQKQVLEL-----GALSKLMKMVKSS--F--------VEEAVKAL-Y  238 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq-NN~~~Q~~vle~-----G~lp~Ll~LL~s~--~--------~~v~~kAl-~  238 (405)
                      +..+.+.|++..+.+...+..+|..++. +.......|+..     ..++.|+..=+..  .        +.+|...+ +
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7788889999889999999999999999 888888888765     3444444332211  1        16666554 5


Q ss_pred             HHHHHhcCChhhHHHHHhcCc-HHHHHHhhcCCCccHHHHHHHHHHHHH-HhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015496          239 TVSSLIRNNLAGQEMFYVEAG-DLMLQDILGNSSFEIRLHRKAVSLVGD-LAKCQLENMHKVEPPLFRDRFFLKSVVDLT  316 (405)
Q Consensus       239 ALS~lir~~~~~~~~f~~~gG-i~~L~~lL~s~~~~~kl~~kA~~lLs~-L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL  316 (405)
                      .|+-+...++.....++..++ +..+.+-|..+  +..+....+..+.. +..+.  ......+-.+.....+..|+.+-
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~--~v~r~~K~~~fn~~~L~~l~~Ly  213 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDS--SVSRSTKCKLFNEWTLSQLASLY  213 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCC--CCChhhhhhhcCHHHHHHHHHHh
Confidence            566555556667777777654 56666667665  45555555555553 33221  22334445566778899999988


Q ss_pred             cCCCh----HHHHHHHHHHHHHhcCChhhHHHHHhcCCc---------------------hHHHHHHHHHHHHhhhchhh
Q 015496          317 ASADL----DLQEKALAAIKNLLQLRTTEALVLKDFCGL---------------------DTALERLRQQLQEVMLEEDQ  371 (405)
Q Consensus       317 ~~~D~----~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl---------------------~~~L~~L~~~~~~l~~~~~q  371 (405)
                      ..++.    .+.+.+-..|..++..+.. .-.+. +.|.                     -..|..|...++.-- +..|
T Consensus       214 ~~~~~~~~~~~~~~vh~fL~~lcT~p~~-Gv~f~-d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lkp~e-~~~q  290 (330)
T PF11707_consen  214 SRDGEDEKSSVADLVHEFLLALCTDPKH-GVCFP-DNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLKPWE-DDRQ  290 (330)
T ss_pred             cccCCcccchHHHHHHHHHHHHhcCCCc-ccccC-CCCcCcCcccccccccccCCCCCcccHHHHHHHHHCCCCc-cHHH
Confidence            87777    8899999888888876432 22222 1111                     122333333322211 4456


Q ss_pred             hhhHHH-HHHHHHHHHHHHhhh
Q 015496          372 RDYAMD-VEALRREVELIFFRK  392 (405)
Q Consensus       372 ~~~~~d-~~~l~~e~~~~~~~k  392 (405)
                      .+.+.. +++.++.+.-+++..
T Consensus       291 ~~Lvl~Il~~~PeLva~Y~~~~  312 (330)
T PF11707_consen  291 QELVLKILKACPELVAPYFNNL  312 (330)
T ss_pred             HHHHHHHHHHChHHHHHHHHhh
Confidence            665544 788888888887766

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.05  E-value=17  Score=40.52  Aligned_cols=159  Identities=13%  Similarity=0.131  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC
Q 015496          148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS  227 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s  227 (405)
                      ..|..|+..+-.++-.-+++.+     -+|.+|+...+.+.+||...---|-.-|.++|...     .=-|..+=+-|++
T Consensus        50 ~~KleAmKRIia~iA~G~dvS~-----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~D  119 (968)
T KOG1060|consen   50 SLKLEAMKRIIALIAKGKDVSL-----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKD  119 (968)
T ss_pred             HHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcC
Confidence            4577777766666544444433     24555555555555555544444444343332111     0135667777888


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCC
Q 015496          228 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF  307 (405)
Q Consensus       228 ~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g  307 (405)
                      +++.+|.-|+.++|+| |-.  ...-+    .+-.+.++..+.  .+.+|+.|+.+|--|-+     .+++....+    
T Consensus       120 pN~LiRasALRvlSsI-Rvp--~IaPI----~llAIk~~~~D~--s~yVRk~AA~AIpKLYs-----Ld~e~k~qL----  181 (968)
T KOG1060|consen  120 PNQLIRASALRVLSSI-RVP--MIAPI----MLLAIKKAVTDP--SPYVRKTAAHAIPKLYS-----LDPEQKDQL----  181 (968)
T ss_pred             CcHHHHHHHHHHHHhc-chh--hHHHH----HHHHHHHHhcCC--cHHHHHHHHHhhHHHhc-----CChhhHHHH----
Confidence            8899999999999987 431  11111    122344455554  67899999999998874     344444433    


Q ss_pred             cHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          308 FLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       308 ~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                       +..+-.||...++-|.-.|+.|...+.
T Consensus       182 -~e~I~~LLaD~splVvgsAv~AF~evC  208 (968)
T KOG1060|consen  182 -EEVIKKLLADRSPLVVGSAVMAFEEVC  208 (968)
T ss_pred             -HHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence             333444555556666666665555444

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=86.02  E-value=1.2  Score=44.59  Aligned_cols=81  Identities=15%  Similarity=0.130  Sum_probs=67.2

Q ss_pred             CchhHHHhc--CCHHHHHHhcCCCCHH-HHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 015496          165 DNANDLSKL--GGLSVLVGQLNHPDTD-IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS  241 (405)
Q Consensus       165 DnA~~~~~~--Ggi~~Lv~lL~s~~~~-Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS  241 (405)
                      +|+..|.+-  ..+..|..+|++.++. .-+-||.=|+..+..-|+....+.++|+=..++.|++++++.++-.|+.|+-
T Consensus       345 ~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q  424 (432)
T COG5231         345 TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQ  424 (432)
T ss_pred             hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHH
Confidence            455555554  3577888999876665 6678999999999999999999999999999999999999999988888877


Q ss_pred             HHhc
Q 015496          242 SLIR  245 (405)
Q Consensus       242 ~lir  245 (405)
                      .++.
T Consensus       425 ~~i~  428 (432)
T COG5231         425 TCIS  428 (432)
T ss_pred             HHHh
Confidence            6653

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=85.92  E-value=8.3  Score=34.66  Aligned_cols=143  Identities=17%  Similarity=0.163  Sum_probs=85.3

Q ss_pred             HHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496          176 LSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEM  253 (405)
Q Consensus       176 i~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~  253 (405)
                      ++.|+++|++ .+.++|..|..+||.+-.=.|...+.+....-     ... ...........+     ...+..+..+.
T Consensus        12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~-----~~~~~~~~~~~~~~~l-----~~~~~~~~~ee   81 (160)
T PF11865_consen   12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD-----SKSSENSNDESTDISL-----PMMGISPSSEE   81 (160)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC-----ccccccccccchhhHH-----hhccCCCchHH
Confidence            5667788864 56999999999999998877766553332111     000 000011111111     11223335666


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496          254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN  333 (405)
Q Consensus       254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~  333 (405)
                      |+-.-.+..|+..|++++ -......++.++.++...    .+....+.+-  .++|.+++.+++.+...+|..+.-|..
T Consensus        82 ~y~~vvi~~L~~iL~D~s-Ls~~h~~vv~ai~~If~~----l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~  154 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPS-LSSHHTAVVQAIMYIFKS----LGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLAD  154 (160)
T ss_pred             HHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHh----cCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            776777888888888763 233455677777777643    1222233332  477888888887666888887776666


Q ss_pred             Hh
Q 015496          334 LL  335 (405)
Q Consensus       334 L~  335 (405)
                      |.
T Consensus       155 lv  156 (160)
T PF11865_consen  155 LV  156 (160)
T ss_pred             HH
Confidence            65

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=85.76  E-value=10  Score=33.43  Aligned_cols=90  Identities=12%  Similarity=0.149  Sum_probs=67.1

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496          235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD  314 (405)
Q Consensus       235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~  314 (405)
                      ..+-.|+-+++..+.+-.     .++..|.+-|+++  ++.++..|+.++-.++.    |..+.+...+.+..|+..|+.
T Consensus        20 ~~ileicD~In~~~~~~k-----~a~rai~krl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evas~~Fl~el~k   88 (139)
T cd03567          20 EAIQAFCEQINKEPEGPQ-----LAVRLLAHKIQSP--QEKEALQALTVLEACMK----NCGERFHSEVGKFRFLNELIK   88 (139)
T ss_pred             HHHHHHHHHHHcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHHhHHHHHHHHH
Confidence            355556666665443211     2456777778876  57789999999999886    466777778888999999999


Q ss_pred             hccC------CChHHHHHHHHHHHHHh
Q 015496          315 LTAS------ADLDLQEKALAAIKNLL  335 (405)
Q Consensus       315 LL~~------~D~~v~E~al~aL~~L~  335 (405)
                      ++..      .+..|+++++..+..-+
T Consensus        89 l~~~k~~~~~~~~~Vk~kil~li~~W~  115 (139)
T cd03567          89 LVSPKYLGSRTSEKVKTKIIELLYSWT  115 (139)
T ss_pred             HhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            9963      47899999998887765

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=85.25  E-value=28  Score=37.76  Aligned_cols=110  Identities=13%  Similarity=0.067  Sum_probs=75.1

Q ss_pred             CHHHHHHhcCC--C-----CHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015496          175 GLSVLVGQLNH--P-----DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN  247 (405)
Q Consensus       175 gi~~Lv~lL~s--~-----~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~  247 (405)
                      .+|.|+++|..  +     +=.+-..|..||--.+|+   +.+.+++- .+..+=+-+++++=.-|..|+-|+|++..+-
T Consensus       322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp  397 (858)
T COG5215         322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGP  397 (858)
T ss_pred             HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence            68999999954  2     224777888888888876   34444432 4444445566666566889999999998663


Q ss_pred             hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      ...+..-+-...++.|...+.++  ..-++..++|++..++.+
T Consensus       398 ~~~~lT~~V~qalp~i~n~m~D~--~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         398 CEDCLTKIVPQALPGIENEMSDS--CLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             cHHHHHhhHHhhhHHHHHhcccc--eeehhhHHHHHHHHHHHH
Confidence            33333333356777777777754  456788999999999865

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=84.89  E-value=7.8  Score=33.56  Aligned_cols=91  Identities=21%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496          235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD  314 (405)
Q Consensus       235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~  314 (405)
                      ..+..|+.+++..+.+...     ++..|.+-|+++  ++.++..|+.++-.+..    |..+.+...+.+..++..|+.
T Consensus        19 ~~il~icd~I~~~~~~~k~-----a~raL~krl~~~--n~~vql~AL~lLd~~vk----Ncg~~f~~~i~s~~fl~~l~~   87 (133)
T cd03561          19 ALNLELCDLINLKPNGPKE-----AARAIRKKIKYG--NPHVQLLALTLLELLVK----NCGKPFHLQVADKEFLLELVK   87 (133)
T ss_pred             HHHHHHHHHHhCCCCCHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----hCChHHHHHHhhHHHHHHHHH
Confidence            4667788888776443322     457777778876  67889999999999886    456656677777788888999


Q ss_pred             hccC---CChHHHHHHHHHHHHHhc
Q 015496          315 LTAS---ADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       315 LL~~---~D~~v~E~al~aL~~L~~  336 (405)
                      ++..   .+..++++++..+.....
T Consensus        88 l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          88 IAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            9975   488999999998888764

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=84.72  E-value=26  Score=33.74  Aligned_cols=179  Identities=17%  Similarity=0.126  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHccCC-CCchhHHHhcCCHHHH-HH-------hcC-----CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496          150 SQRALQELLILVEP-IDNANDLSKLGGLSVL-VG-------QLN-----HPDTDIRKISAWILGKASQNNPLVQKQVLEL  215 (405)
Q Consensus       150 k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~L-v~-------lL~-----s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~  215 (405)
                      |+.||++|-.--++ .|.|-.+-...|++.. ++       +|+     .....-.+.|..+|-.+++ .|+.+..|++.
T Consensus        62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQclaS-hPetk~~Fl~A  140 (315)
T COG5209          62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLAS-HPETKKVFLDA  140 (315)
T ss_pred             HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHhc-Ccchheeeeec
Confidence            44466666554443 4566666665555433 22       232     1223334556666665554 69999999887


Q ss_pred             Cc---HHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          216 GA---LSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       216 G~---lp~Ll~LL~s~~--~~v~~kAl~ALS~lir~~~~~~~~f~-~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      ..   +-+++-..++.+  +-.|..++..|+++++|..+-.-.|+ .-..++.+.+++..+  +.--+.-|+|.+.-+.-
T Consensus       141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g--SElSktvaifI~qkil~  218 (315)
T COG5209         141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG--SELSKTVAIFIFQKILG  218 (315)
T ss_pred             ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh--hHHHHHHHHHHHHHHhc
Confidence            53   223333333322  34688999999999999766555554 568899999999876  33456677777776652


Q ss_pred             chhccCCCCcc----h---hHH-hCCcHHHHHHhc-cCCChHHHHHHHHHHHHHhcC
Q 015496          290 CQLENMHKVEP----P---LFR-DRFFLKSVVDLT-ASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       290 ~~~~~~~~~~~----~---~l~-~~g~l~~Lv~LL-~~~D~~v~E~al~aL~~L~~~  337 (405)
                            +..-.    +   .|. -..+++.++..+ ..+...+..+++++-..|...
T Consensus       219 ------dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         219 ------DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             ------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence                  22111    1   111 123444444433 345667778888877777654

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=84.20  E-value=3.3  Score=32.49  Aligned_cols=68  Identities=10%  Similarity=0.097  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCc
Q 015496          233 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF  308 (405)
Q Consensus       233 ~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~  308 (405)
                      .+.|+||++++.. .+.+...+.+.+.++.++++.... ....+|--+.+.+.-+++      ..+-.+.+.+.|+
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s-~v~siRGT~fy~Lglis~------T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENS-PVLSIRGTCFYVLGLISS------TEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhC-CccchHHHHHHHHHHHhC------CHHHHHHHHHcCC
Confidence            4569999999964 677788777889999999998765 234455555555555553      3344455555554

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=83.70  E-value=43  Score=36.43  Aligned_cols=156  Identities=9%  Similarity=-0.060  Sum_probs=93.6

Q ss_pred             hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CcH
Q 015496          182 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGD  260 (405)
Q Consensus       182 lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~-gGi  260 (405)
                      -+++++-.=|..|+.++|.+..+--+.+-.-+-..++|.++-+..++.--++..+.|+++.|.-+-+...+.-... +-+
T Consensus       374 ni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~v  453 (858)
T COG5215         374 NIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEV  453 (858)
T ss_pred             hccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHH
Confidence            3456777889999999999998755555555556889999888876555678888888888875544322211110 112


Q ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh--CCcHHHHHHhc--cCCChHHHHHHHHHHHHHhc
Q 015496          261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD--RFFLKSVVDLT--ASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~--~g~l~~Lv~LL--~~~D~~v~E~al~aL~~L~~  336 (405)
                      +....-|.+   .++.-.+.+|..-||+.+-. ....+..+.+..  ..++..|+..-  ..++...|..+-.+|+.|..
T Consensus       454 sa~liGl~D---~p~~~~ncsw~~~nlv~h~a-~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~  529 (858)
T COG5215         454 SASLIGLMD---CPFRSINCSWRKENLVDHIA-KAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL  529 (858)
T ss_pred             HHHHhhhhc---cchHHhhhHHHHHhHHHhhh-hhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence            222222332   35677889999999986521 111111111211  12333333321  23466788888888998887


Q ss_pred             CChhh
Q 015496          337 LRTTE  341 (405)
Q Consensus       337 ~~~~~  341 (405)
                      ..++.
T Consensus       530 ~~~d~  534 (858)
T COG5215         530 ICPDA  534 (858)
T ss_pred             hcchh
Confidence            65543

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=83.26  E-value=19  Score=39.93  Aligned_cols=157  Identities=15%  Similarity=0.109  Sum_probs=98.8

Q ss_pred             hcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChh
Q 015496          172 KLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLA  249 (405)
Q Consensus       172 ~~Ggi~~Lv~-lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L-L~s~~~~v~~kAl~ALS~lir~~~~  249 (405)
                      ..+...++|. ++...+|-+|....-.++-+-.+..       +.++|..|+.. +++.++.||..|+-||+-++-..|.
T Consensus       516 rqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~  588 (929)
T KOG2062|consen  516 RQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE  588 (929)
T ss_pred             hhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence            3456677775 5567889999887766655433221       24678889988 4556789999999999998876665


Q ss_pred             hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHH
Q 015496          250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKAL  328 (405)
Q Consensus       250 ~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~-D~~v~E~al  328 (405)
                      .         .+-.+.+|..+ .++-+|--++.+|.=-|.+.   .+   .+      .+. |++-|.++ ..-||.-|+
T Consensus       589 ~---------~~s~V~lLses-~N~HVRyGaA~ALGIaCAGt---G~---~e------Ai~-lLepl~~D~~~fVRQgAl  645 (929)
T KOG2062|consen  589 Q---------LPSTVSLLSES-YNPHVRYGAAMALGIACAGT---GL---KE------AIN-LLEPLTSDPVDFVRQGAL  645 (929)
T ss_pred             h---------chHHHHHHhhh-cChhhhhhHHHHHhhhhcCC---Cc---HH------HHH-HHhhhhcChHHHHHHHHH
Confidence            3         34445556544 35668889999999888541   11   11      122 22223333 345667777


Q ss_pred             HHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHHhhh
Q 015496          329 AAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVML  367 (405)
Q Consensus       329 ~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~~  367 (405)
                      -++.-+.-.         +.--+.|.....++++..++.
T Consensus       646 Ia~amIm~Q---------~t~~~~pkv~~frk~l~kvI~  675 (929)
T KOG2062|consen  646 IALAMIMIQ---------QTEQLCPKVNGFRKQLEKVIN  675 (929)
T ss_pred             HHHHHHHHh---------cccccCchHHHHHHHHHHHhh
Confidence            776665432         123455667777777777664

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.06  E-value=48  Score=37.05  Aligned_cols=158  Identities=17%  Similarity=0.145  Sum_probs=96.5

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHH---------------HHHHHHHHHHHccCCCCc-hhHHHhcCCH-HH
Q 015496          116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLE---------------DSQRALQELLILVEPIDN-ANDLSKLGGL-SV  178 (405)
Q Consensus       116 ~L~~a~~~~~~~~d~~lmk~al~~L~~~~~t~e---------------~k~~AL~~L~~Lve~iDn-A~~~~~~Ggi-~~  178 (405)
                      ++++.+++=....-.+-||+.+..+-|.+.-+.               +....|--.-++|...++ ...++.|=.+ ..
T Consensus        24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna  103 (948)
T KOG1058|consen   24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNA  103 (948)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHH
Confidence            346666631112234679999988888764322               112333334455555544 4445544211 12


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015496          179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA  258 (405)
Q Consensus       179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g  258 (405)
                      +-+-|+|||+=||-...+-|+.+=-  |+.-     ...+|.+...|.+.+.=||..|+.||.+|-+++..     +=-.
T Consensus       104 ~RkDLQHPNEyiRG~TLRFLckLkE--~ELl-----epl~p~IracleHrhsYVRrNAilaifsIyk~~~~-----L~pD  171 (948)
T KOG1058|consen  104 YRKDLQHPNEYIRGSTLRFLCKLKE--PELL-----EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-----LIPD  171 (948)
T ss_pred             HhhhccCchHhhcchhhhhhhhcCc--HHHh-----hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-----hcCC
Confidence            2346788999999888888877642  3222     35678889999999999999999999999876321     1234


Q ss_pred             cHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496          259 GDLMLQDILGNSSFEIRLHRKAVSLVGD  286 (405)
Q Consensus       259 Gi~~L~~lL~s~~~~~kl~~kA~~lLs~  286 (405)
                      +-+++-++|... .|...+|+|.-.|..
T Consensus       172 apeLi~~fL~~e-~DpsCkRNAFi~L~~  198 (948)
T KOG1058|consen  172 APELIESFLLTE-QDPSCKRNAFLMLFT  198 (948)
T ss_pred             hHHHHHHHHHhc-cCchhHHHHHHHHHh
Confidence            566666666554 255567776554443

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=82.76  E-value=50  Score=32.26  Aligned_cols=190  Identities=17%  Similarity=0.136  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHccCC-CCchhHHHhc-CCHHHHHH-hc------C----CCCHHHHHHHHHHHHHHhcCChHhHHHHHH
Q 015496          148 EDSQRALQELLILVEP-IDNANDLSKL-GGLSVLVG-QL------N----HPDTDIRKISAWILGKASQNNPLVQKQVLE  214 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~-iDnA~~~~~~-Ggi~~Lv~-lL------~----s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle  214 (405)
                      +.++.|+.+|.+--+. .|.|..+-+. |-...+++ .+      +    ++...-|.--+-+|-.++-..|+.+..|++
T Consensus        39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~  118 (293)
T KOG3036|consen   39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLR  118 (293)
T ss_pred             chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHH
Confidence            5577788888776654 3666665554 33333332 11      1    123334544444444555567999999999


Q ss_pred             cCcHHHHHHhhcCC---C--HHHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496          215 LGALSKLMKMVKSS---F--VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       215 ~G~lp~Ll~LL~s~---~--~~v~~kAl~ALS~lir~~~~~~~~f~-~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~  288 (405)
                      ...=-.|-..|...   .  +-.|--++..|++++++.....-.|+ ..+.++..++.+..+  +.--|.-|.|.+.-+.
T Consensus       119 A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~G--SelSKtvA~fIlqKIl  196 (293)
T KOG3036|consen  119 AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESG--SELSKTVATFILQKIL  196 (293)
T ss_pred             ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcc--cHHHHHHHHHHHHHHh
Confidence            86533444444432   2  44699999999999999776666665 578899999999887  3445667777777665


Q ss_pred             hchhccCCCCc-------chhHHh-CCcHHHHH-HhccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          289 KCQLENMHKVE-------PPLFRD-RFFLKSVV-DLTASADLDLQEKALAAIKNLLQLRTTEALVLK  346 (405)
Q Consensus       289 ~~~~~~~~~~~-------~~~l~~-~g~l~~Lv-~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~  346 (405)
                      .      +..-       .+.|.- .-++..++ .+.+.++..+..++.++...|...+ ..|...+
T Consensus       197 l------dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp-rar~aL~  256 (293)
T KOG3036|consen  197 L------DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP-RARAALR  256 (293)
T ss_pred             h------ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-HHHHHHH
Confidence            3      1111       112211 12344444 3445678999999999999998764 3444444

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=82.18  E-value=15  Score=40.83  Aligned_cols=161  Identities=13%  Similarity=0.040  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH-h-cCcHHHHHHhhcC
Q 015496          192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY-V-EAGDLMLQDILGN  269 (405)
Q Consensus       192 ~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~-~-~gGi~~L~~lL~s  269 (405)
                      +.+..++.|+++-|...++.+++.-+++.+-.++..+++..+..++..++|+.-+ +.....|+ + ..|.+....++..
T Consensus       560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~e~  638 (748)
T KOG4151|consen  560 FEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNLEV  638 (748)
T ss_pred             HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHHHh
Confidence            3444555566666777777788888888877777777788888899999999864 55555555 3 3566666666655


Q ss_pred             CCccHHHHHHHHHHHHHHhhchhccCCCCcch-hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015496          270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDF  348 (405)
Q Consensus       270 ~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~-~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~  348 (405)
                        .+.++..-++..+.-++.     .....++ ...-..+...++.++.+.+..+|...+..+.++...+.+....+. .
T Consensus       639 --~~E~~~lA~a~a~a~I~s-----v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~-~  710 (748)
T KOG4151|consen  639 --ADEKFELAGAGALAAITS-----VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIF-E  710 (748)
T ss_pred             --hhhHHhhhccccccchhh-----cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhc-c
Confidence              356666666655554543     2233333 333346777888889999999999998888887655433223332 3


Q ss_pred             CCchHHHHHHHHH
Q 015496          349 CGLDTALERLRQQ  361 (405)
Q Consensus       349 ~Gl~~~L~~L~~~  361 (405)
                      .-..+.+..++..
T Consensus       711 ~~~~~~l~~~~~~  723 (748)
T KOG4151|consen  711 TEVMELLSGLQKL  723 (748)
T ss_pred             chHHHHHHHHHHh
Confidence            3344444444443

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=81.99  E-value=30  Score=38.37  Aligned_cols=143  Identities=13%  Similarity=0.100  Sum_probs=99.6

Q ss_pred             cCCHHHHHH-hcCC----CCHHHHHHHHHHHHHHhc-CChHhHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 015496          173 LGGLSVLVG-QLNH----PDTDIRKISAWILGKASQ-NNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIR  245 (405)
Q Consensus       173 ~Ggi~~Lv~-lL~s----~~~~Ir~~Aa~~Lg~~aq-NN~~~Q~~vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir  245 (405)
                      +|-+.|+|. ...+    .+++++..|--+|..+.- .+..+-      .-+|.|+..+. ++.|.+|..|+-+++-+.-
T Consensus       890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~------ehlpllIt~mek~p~P~IR~NaVvglgD~~v  963 (1128)
T COG5098         890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS------EHLPLLITSMEKHPIPRIRANAVVGLGDFLV  963 (1128)
T ss_pred             HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHhhCCCcceeccceeeccccce
Confidence            345667765 3333    689999988888877653 233333      35799999887 6778899999999886543


Q ss_pred             CChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHH
Q 015496          246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE  325 (405)
Q Consensus       246 ~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E  325 (405)
                      -+    ..|++.+- ..|.+-|.+.  +..+|+.+...+.+|..-     +     .+.-.|-++.++.+|..+|..+.+
T Consensus       964 cf----N~~~de~t-~yLyrrL~De--~~~V~rtclmti~fLila-----g-----q~KVKGqlg~ma~~L~deda~Isd 1026 (1128)
T COG5098         964 CF----NTTADEHT-HYLYRRLGDE--DADVRRTCLMTIHFLILA-----G-----QLKVKGQLGKMALLLTDEDAEISD 1026 (1128)
T ss_pred             eh----hhhhHHHH-HHHHHHhcch--hhHHHHHHHHHHHHHHHc-----c-----ceeeccchhhhHhhccCCcchHHH
Confidence            32    23443333 3444445554  556899999999998741     1     233458899999999999999999


Q ss_pred             HHHHHHHHHhcCC
Q 015496          326 KALAAIKNLLQLR  338 (405)
Q Consensus       326 ~al~aL~~L~~~~  338 (405)
                      .|-..+..++.-.
T Consensus      1027 mar~fft~~a~Kd 1039 (1128)
T COG5098        1027 MARHFFTQIAKKD 1039 (1128)
T ss_pred             HHHHHHHHHHhcc
Confidence            9998888888653

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=81.72  E-value=36  Score=38.51  Aligned_cols=123  Identities=20%  Similarity=0.264  Sum_probs=82.5

Q ss_pred             hhHHHhcCCHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc----CCC----HHHH
Q 015496          167 ANDLSKLGGLSVLVGQLNH-----PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK----SSF----VEEA  233 (405)
Q Consensus       167 A~~~~~~Ggi~~Lv~lL~s-----~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~----s~~----~~v~  233 (405)
                      ++.+.+.||+..++.+|.+     ...++-.....++..+++ -+.+++++++.|+++.|++.+.    .+.    ..+.
T Consensus       110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~  188 (802)
T PF13764_consen  110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA  188 (802)
T ss_pred             HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence            5667778999999999865     234566667788888886 5899999999999999998874    322    3455


Q ss_pred             HHHHHHHHHHhcCC----hhhHHHHHhcCc--------HHHHHHhhcCC--CccHHHHHHHHHHHHHHhhc
Q 015496          234 VKALYTVSSLIRNN----LAGQEMFYVEAG--------DLMLQDILGNS--SFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       234 ~kAl~ALS~lir~~----~~~~~~f~~~gG--------i~~L~~lL~s~--~~~~kl~~kA~~lLs~L~~~  290 (405)
                      ++.+--+-.++..-    ......+....|        +..|.+.+.++  ..+.++..-.+.+|-+|+..
T Consensus       189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G  259 (802)
T PF13764_consen  189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYG  259 (802)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcC
Confidence            55555555444321    111112223333        67777777654  13567778888888888864

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=81.67  E-value=21  Score=32.12  Aligned_cols=108  Identities=14%  Similarity=0.072  Sum_probs=74.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCC-HHHHHHHHHHHHH---HhcCChh
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSF-VEEAVKALYTVSS---LIRNNLA  249 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~--G~lp~Ll~LL~s~~-~~v~~kAl~ALS~---lir~~~~  249 (405)
                      +..+..+|+++++.-|+.++..++..+++++  .+.+.++  -.+..|+++|+.++ ..+.+-++.+|+.   .++++|+
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            5567789999999999999999999998864  3445444  46888999998865 4566666666665   4566777


Q ss_pred             hHHHHHhcC---cHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          250 GQEMFYVEA---GDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       250 ~~~~f~~~g---Gi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      ....+....   -++.++.++++    ......++.++..+..
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLP  143 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence            666665433   34444554443    1246678888888875

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=81.50  E-value=77  Score=35.93  Aligned_cols=225  Identities=14%  Similarity=0.057  Sum_probs=128.0

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC----CCC----HHHHHHHHHHHH
Q 015496          128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN----HPD----TDIRKISAWILG  199 (405)
Q Consensus       128 ~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~----s~~----~~Ir~~Aa~~Lg  199 (405)
                      ..-+.|-..++.+.+....-+.-...+.-|.+++.--.|...+.++|+++.|+.-|.    .+.    +++-..-..++-
T Consensus       117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE  196 (802)
T PF13764_consen  117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE  196 (802)
T ss_pred             CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence            345667677777776544434444455666666666689999999999999997663    444    566666666666


Q ss_pred             HHhcCC----hHhHHHHHHcC--------cHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHH
Q 015496          200 KASQNN----PLVQKQVLELG--------ALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML  263 (405)
Q Consensus       200 ~~aqNN----~~~Q~~vle~G--------~lp~Ll~LL~s~----~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L  263 (405)
                      .+.+.-    ...........        -+..|++.+.++    ++.+....+..|..++.+++...+.++++  +.+.
T Consensus       197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~  274 (802)
T PF13764_consen  197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPY  274 (802)
T ss_pred             HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHh
Confidence            666421    11111111222        277788887765    35667778888999999998887777642  1222


Q ss_pred             HHhh--c-CCCccHHHHHHHHHHHHHHhhchhcc-CCCCcchhHHhCCcHHHHHHhccCC--------ChH--------H
Q 015496          264 QDIL--G-NSSFEIRLHRKAVSLVGDLAKCQLEN-MHKVEPPLFRDRFFLKSVVDLTASA--------DLD--------L  323 (405)
Q Consensus       264 ~~lL--~-s~~~~~kl~~kA~~lLs~L~~~~~~~-~~~~~~~~l~~~g~l~~Lv~LL~~~--------D~~--------v  323 (405)
                      +++=  . ..+.+..+   .+-.+..++..-..+ .....++.+.+.|+++..++.|...        .++        -
T Consensus       275 l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  275 LDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             cChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            2211  1 11112222   133333333321001 1124567788889999888776542        112        2


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496          324 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR  359 (405)
Q Consensus       324 ~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~  359 (405)
                      ...++..|.-|+.+.... |... ..++.+.+.+|.
T Consensus       352 Lp~iL~lL~GLa~gh~~t-Q~~~-~~~~l~~lH~LE  385 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEPT-QLLI-AEQLLPLLHRLE  385 (802)
T ss_pred             HHHHHHHHHHHHhcCHHH-HHHH-HhhHHHHHHHhh
Confidence            335678888888764433 3333 344446666665

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=81.48  E-value=27  Score=40.81  Aligned_cols=69  Identities=20%  Similarity=0.184  Sum_probs=43.3

Q ss_pred             cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496          259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       259 Gi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~  336 (405)
                      -+++|.+.|.+.  +.-+..+|+..++-|+..     +--.+..+  ..+++.+.-+|-+++.=+|..++..|.....
T Consensus       657 llPLl~Q~ltD~--EE~Viv~aL~~ls~Lik~-----~ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  657 LLPLLQQGLTDG--EEAVIVSALGSLSILIKL-----GLLRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHhccCc--chhhHHHHHHHHHHHHHh-----cccchHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence            345555666654  455777888888888752     11111112  2355556667888888888888888777664

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=81.04  E-value=24  Score=39.99  Aligned_cols=126  Identities=17%  Similarity=0.099  Sum_probs=86.5

Q ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHhcCChHhHH
Q 015496          135 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD----TDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       135 ~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~----~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      ..+.++...+.++-....+.+-++++++..+|...+... .+|.+++.|..++    +.+...|+.+|.++..|.|.==.
T Consensus       575 ~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~  653 (1005)
T KOG2274|consen  575 LTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLP  653 (1005)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCcc
Confidence            345555555555555556777777887766666665543 7999999998765    88999999999999998654333


Q ss_pred             HHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHH
Q 015496          211 QVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL  261 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~  261 (405)
                      .-+-.-++|++.++. .+++.++-..+--+|+.++....+.....-..+|..
T Consensus       654 ~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~  705 (1005)
T KOG2274|consen  654 NLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN  705 (1005)
T ss_pred             HHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence            333345788888876 455556666777788888877666555555555544

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=80.87  E-value=17  Score=39.29  Aligned_cols=149  Identities=14%  Similarity=0.133  Sum_probs=94.7

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc
Q 015496          181 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG  259 (405)
Q Consensus       181 ~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L-L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG  259 (405)
                      ++|.+.++-+|...+..++.+--+..       +.|++..|+.. +++.++.||..|+.||+-+|-..+.         .
T Consensus       523 ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~  586 (926)
T COG5116         523 ELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------L  586 (926)
T ss_pred             HHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------h
Confidence            46677888899888877766544322       24788888888 5666789999999999988766543         3


Q ss_pred             HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015496          260 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  339 (405)
Q Consensus       260 i~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~  339 (405)
                      +.-.+++|..+ .+.-+|--+++++.-.|.+.   .+         .-.+..|-.|......-+|..|+-+++-++... 
T Consensus       587 lv~tvelLs~s-hN~hVR~g~AvaLGiacag~---G~---------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~-  652 (926)
T COG5116         587 LVGTVELLSES-HNFHVRAGVAVALGIACAGT---GD---------KVATDILEALMYDTNDFVRQSAMIAVGMILMQC-  652 (926)
T ss_pred             hhHHHHHhhhc-cchhhhhhhHHHhhhhhcCC---cc---------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc-
Confidence            44455666544 36668888888888888642   11         112333344444556667788888887766431 


Q ss_pred             hhHHHHHhcCCchHHHHHHHHHHHHhhh
Q 015496          340 TEALVLKDFCGLDTALERLRQQLQEVML  367 (405)
Q Consensus       340 ~~~~~v~~~~Gl~~~L~~L~~~~~~l~~  367 (405)
                              ...+.|-+.....++..++.
T Consensus       653 --------n~~Lnp~v~~I~k~f~~vI~  672 (926)
T COG5116         653 --------NPELNPNVKRIIKKFNRVIV  672 (926)
T ss_pred             --------CcccChhHHHHHHHHHHHHh
Confidence                    22234444555555555443

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=80.52  E-value=6.1  Score=36.32  Aligned_cols=69  Identities=16%  Similarity=0.132  Sum_probs=57.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcC---ChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE  252 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN---N~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~  252 (405)
                      ++.++++.-+++..+|..|..+|..+.+.   ||.        -.+|.|+.|..++++.++.+|...+..+...++....
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~   81 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE   81 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence            56777877889999999999999988864   552        3689999999999999999999999999877776433

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=80.46  E-value=13  Score=32.68  Aligned_cols=90  Identities=17%  Similarity=0.175  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015496          235 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD  314 (405)
Q Consensus       235 kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~  314 (405)
                      ..+-.|+-+++..+.+..     .++..|.+=|+++  ++.++..|+.++-.++.    |.+......+.+.+++..|+.
T Consensus        23 ~~ileicD~In~~~~~~k-----~a~ral~krl~~~--n~~vql~AL~LLe~~vk----NCG~~fh~evas~~fl~~l~~   91 (142)
T cd03569          23 ASILEICDMIRSKDVQPK-----YAMRALKKRLLSK--NPNVQLYALLLLESCVK----NCGTHFHDEVASREFMDELKD   91 (142)
T ss_pred             HHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHHHH
Confidence            355567777776543322     3566777778775  67889999999999886    355566667788899999999


Q ss_pred             hccC-CChHHHHHHHHHHHHHh
Q 015496          315 LTAS-ADLDLQEKALAAIKNLL  335 (405)
Q Consensus       315 LL~~-~D~~v~E~al~aL~~L~  335 (405)
                      ++.. .+..|+++++..+..-+
T Consensus        92 l~~~~~~~~Vk~kil~li~~W~  113 (142)
T cd03569          92 LIKTTKNEEVRQKILELIQAWA  113 (142)
T ss_pred             HHcccCCHHHHHHHHHHHHHHH
Confidence            9974 58899999998888776

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=80.15  E-value=67  Score=32.03  Aligned_cols=150  Identities=16%  Similarity=0.189  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC---CchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhc--
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI---DNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQ--  203 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i---DnA~~~~~~Ggi~~Lv~lL~s--~~~~Ir~~Aa~~Lg~~aq--  203 (405)
                      +++-.++..++.+. + +++.-|+..+.-++-++   +.+..+.+. ..|+|.+.+..  ..+.+|..++.+||-++-  
T Consensus        86 tL~~~~~k~lkkg~-~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~  162 (309)
T PF05004_consen   86 TLLDALLKSLKKGK-S-EEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVG  162 (309)
T ss_pred             HHHHHHHHHhccCC-H-HHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh
Confidence            45555666666654 3 66667777777766553   466676663 57777777753  456788888878777643  


Q ss_pred             -CChHhHHHHHHcCcHHHHH--HhhcC----------CCHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHHHHHHhhcC
Q 015496          204 -NNPLVQKQVLELGALSKLM--KMVKS----------SFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGN  269 (405)
Q Consensus       204 -NN~~~Q~~vle~G~lp~Ll--~LL~s----------~~~~v~~kAl~ALS~lir~~~~~-~~~f~~~gGi~~L~~lL~s  269 (405)
                       +.+......+  ..+..+.  ...++          +++.+...|+.+-+-++..-+.. ...+ -...++.|..+|.+
T Consensus       163 ~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s  239 (309)
T PF05004_consen  163 GSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDS  239 (309)
T ss_pred             cCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcC
Confidence             3333333111  1222111  11221          12457778888888877665552 2222 13468999999998


Q ss_pred             CCccHHHHHHHHHHHHHHh
Q 015496          270 SSFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       270 ~~~~~kl~~kA~~lLs~L~  288 (405)
                      +  +..+|.-|--+|.-|.
T Consensus       240 ~--d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  240 D--DVDVRIAAGEAIALLY  256 (309)
T ss_pred             C--CHHHHHHHHHHHHHHH
Confidence            7  6778887777766554

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=80.04  E-value=6.5  Score=32.13  Aligned_cols=86  Identities=20%  Similarity=0.165  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      +..++++..+.++.  +-.|..++..|..|++.-+ ......-+.+..++..|+++++=|=-.|..+++.++.-.|.   
T Consensus         3 ~~~~~al~~L~dp~--~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---   76 (92)
T PF10363_consen    3 ETLQEALSDLNDPL--PPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---   76 (92)
T ss_pred             HHHHHHHHHccCCC--cchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---
Confidence            45677778887775  4578899999999998887 11222235677778899999999999999999999986653   


Q ss_pred             HHHHcCcHHHHHHhhcC
Q 015496          211 QVLELGALSKLMKMVKS  227 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s  227 (405)
                           ..+|.|++...+
T Consensus        77 -----~vl~~L~~~y~~   88 (92)
T PF10363_consen   77 -----EVLPILLDEYAD   88 (92)
T ss_pred             -----HHHHHHHHHHhC
Confidence                 345666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-37
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-12
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-10
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-07
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-06
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-12
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-09
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-06
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-04
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-04
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-08
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-05
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-11
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-09
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-06
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-10
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-10
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-09
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-08
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-07
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	9e-07
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-04
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-05
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	5e-06
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-06
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	4e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	6e-04

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  136 bits (344), Expect = 2e-37
 Identities = 62/263 (23%), Positives = 113/263 (42%), Gaps = 16/263 (6%)

Query: 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG 175
           ++K  +  L  P                    ++ + AL+ L  L E +DNA D  +L G
Sbjct: 29  QMKSCLRVLSQPMPP------TAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSG 82

Query: 176 LSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA- 233
           + +LVG+ L      +R  +A ++G  SQN   +Q+QVL LGAL KL++++     +   
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 142

Query: 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293
           VKAL+ +S L+R   AG   F    G  +L   +     +++   K+  L+ +L     E
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLK--VKSAFLLQNLLVGHPE 200

Query: 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ-LRTTEALVLKDFCGLD 352
           +   +          ++ +V L  +      E  L A+ +L+           +   GL+
Sbjct: 201 HKGTL-----CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLE 255

Query: 353 TALERLRQQLQEVMLEEDQRDYA 375
             L    Q LQ+    +++ ++ 
Sbjct: 256 ELLRHRCQLLQQHEEYQEELEFC 278

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 42/191 (21%), Positives = 87/191 (45%), Gaps = 16/191 (8%)

Query: 151 QRALQEL-LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 209
             A ++   IL +  +    +   G L  LV  L+ P+  I + + W L   +       
Sbjct: 30  LSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89

Query: 210 KQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQD 265
           + V++ GAL  L++++ S     ++EA+ AL  ++S     +       ++AG L  L  
Sbjct: 90  QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ----AVIDAGALPALVQ 145

Query: 266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 325
           +L + + +I   ++A+  + ++A    E +  V      D   L ++V L +S +  + +
Sbjct: 146 LLSSPNEQIL--QEALWALSNIASGGNEQIQAV-----IDAGALPALVQLLSSPNEQILQ 198

Query: 326 KALAAIKNLLQ 336
           +AL A+ N+  
Sbjct: 199 EALWALSNIAS 209

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 34/171 (19%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
           +    +   G L  LV  L+ P+  I + + W L   +       + V++ GAL  L+++
Sbjct: 87  EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146

Query: 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSL 283
           + S   +   +AL+ +S++        +   ++AG L  L  +L + + +I   ++A+  
Sbjct: 147 LSSPNEQILQEALWALSNIASGGNEQIQAV-IDAGALPALVQLLSSPNEQIL--QEALWA 203

Query: 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
           + ++A    E    V+     +   L+ +  L +  +  +Q++A  A++ L
Sbjct: 204 LSNIASGGNEQKQAVK-----EAGALEKLEQLQSHENEKIQKEAQEALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 36/178 (20%), Positives = 75/178 (42%), Gaps = 25/178 (14%)

Query: 166 NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 225
           + +       L  +  QLN  D   +  +     +   +     + V++ GAL  L++++
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 226 KS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAV 281
            S     ++EA+ AL  ++S        Q    ++AG L  L  +L + + +I   ++A+
Sbjct: 64  SSPNEQILQEALWALSNIAS----GGNEQIQAVIDAGALPALVQLLSSPNEQIL--QEAL 117

Query: 282 SLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
             + ++A    E +  V      P L          V L +S +  + ++AL A+ N+
Sbjct: 118 WALSNIASGGNEQIQAVIDAGALPAL----------VQLLSSPNEQILQEALWALSNI 165

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
           +    +   G L  LV  L+ P+  I + + W L   +      ++ V E GAL KL ++
Sbjct: 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 230

Query: 225 VKS---SFVEEAVKALYTVSS 242
                    +EA +AL  + S
Sbjct: 231 QSHENEKIQKEAQEALEKLQS 251

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 8/206 (3%)

Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
             Q++   +  + N+   +E ++     L  L    +    + K GG+  LV  L  P  
Sbjct: 57  SPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 115

Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248
            +   +   L     +    +  V   G L K++ ++  + V+        +  L   N 
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175

Query: 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 308
             + +     G   L +I+   ++E  L      ++  L+ C   N      P   +   
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAGG 228

Query: 309 LKSVVDLTASADLDLQEKALAAIKNL 334
           ++++          L +  L  ++NL
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNL 254

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 28/179 (15%), Positives = 65/179 (36%), Gaps = 15/179 (8%)

Query: 74  GGFSSIDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQME----IKELMEKLKTPSD 129
            G   +  +L      S    +K T   ++ L+        +     I  L++ L     
Sbjct: 355 YGLPVVVKLLH---PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ 411

Query: 130 AQLIQIAIDDLNNSTLSLEDSQRALQE----LLILVEPIDNANDLSKLGGLSVLVGQLNH 185
               + ++       +     +  ++     L IL   + N   +  L  + + V  L  
Sbjct: 412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYS 471

Query: 186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVS 241
           P  +I++++A +L + +Q +    + +   GA + L +++ S        A   L+ +S
Sbjct: 472 PIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 12/190 (6%)

Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
                    G L  LV  L   D ++   +A IL   + NN   +  V ++G +  L++ 
Sbjct: 257 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316

Query: 225 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279
           V  +       E A+ AL  ++S  +     Q    +  G  ++  +L   S    +   
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK-A 375

Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339
            V L+ +LA C   N   +     R++  +  +V L   A  D Q +          +  
Sbjct: 376 TVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 429

Query: 340 TEALVLKDFC 349
                + + C
Sbjct: 430 VRMEEIVEGC 439

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 23/175 (13%), Positives = 60/175 (34%), Gaps = 17/175 (9%)

Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
              +       +  L   LN  D  +   +A ++ + S+        +     +S +++ 
Sbjct: 8   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 67

Query: 225 VKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRK 279
           ++++            L+ +S     +  G      ++G +  L  +LG+    +  +  
Sbjct: 68  MQNTNDVETARCTAGTLHNLSH----HREGLLAI-FKSGGIPALVKMLGSPVDSVLFY-- 120

Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
           A++ + +L   Q      V     R    L+ +V L    ++         ++ L
Sbjct: 121 AITTLHNLLLHQEGAKMAV-----RLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 41/280 (14%), Positives = 87/280 (31%), Gaps = 58/280 (20%)

Query: 87  IGHSDPAKLKETAQDVQRLSPSELKKRQMEIKE-----LMEKLKTPSDAQLIQI-AIDDL 140
           +G  D   +   A  +  L+ +  K + M  +      L+  +    D + I   AI  L
Sbjct: 275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

Query: 141 NNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK 200
            + T   ++++ A   +                 GL V+V  L+ P       +   L +
Sbjct: 335 RHLTSRHQEAEMAQNAVR-------------LHYGLPVVVKLLHPPSHWPLIKATVGLIR 381

Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 260
                P     + E GA+ +L++++  +  +   +     +          E        
Sbjct: 382 NLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG 441

Query: 261 LM---------------------LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE 299
            +                        +L +    I+  R A  ++ +LA+ + E    +E
Sbjct: 442 ALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQ--RVAAGVLCELAQDK-EAAEAIE 498

Query: 300 -----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
                 PL           +L  S +  +   A A +  +
Sbjct: 499 AEGATAPL----------TELLHSRNEGVATYAAAVLFRM 528

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 66.1 bits (161), Expect = 7e-12
 Identities = 33/207 (15%), Positives = 74/207 (35%), Gaps = 10/207 (4%)

Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
             Q++   +  + N+   +E ++     L  L    +    + K GG+  LV  L  P  
Sbjct: 54  SPQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 112

Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248
            +   +   L     +    +  V   G L K++ ++  + V+        +  L   N 
Sbjct: 113 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 172

Query: 249 AGQEMFYVEAGDLM-LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 307
             + +  + +G    L +I+   ++E  L      ++  L+ C   N      P   +  
Sbjct: 173 ESKLII-LASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAG 224

Query: 308 FLKSVVDLTASADLDLQEKALAAIKNL 334
            ++++          L +  L  ++NL
Sbjct: 225 GMQALGLHLTDPSQRLVQNCLWTLRNL 251

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 37/190 (19%), Positives = 68/190 (35%), Gaps = 12/190 (6%)

Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
                    G L  LV  L   D ++   +A IL   + NN   +  V ++G +  L++ 
Sbjct: 254 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 313

Query: 225 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279
           V  +       E A+ AL  ++S  +     Q    +  G  ++  +L   S    +   
Sbjct: 314 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK-A 372

Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 339
            V L+ +LA C   N   +     R++  +  +V L   A  D Q +          +  
Sbjct: 373 TVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEG 426

Query: 340 TEALVLKDFC 349
                + + C
Sbjct: 427 VRMEEIVEGC 436

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 22/175 (12%), Positives = 60/175 (34%), Gaps = 17/175 (9%)

Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
              +       +  L   LN  D  +   +A ++ + S+        +     +S +++ 
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 225 VKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRK 279
           ++++            L+ +S    ++  G      ++G +  L  +LG+    +  +  
Sbjct: 65  MQNTNDVETARCTAGTLHNLS----HHREGLLAI-FKSGGIPALVKMLGSPVDSVLFY-- 117

Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
           A++ + +L   Q            R    L+ +V L    ++         ++ L
Sbjct: 118 AITTLHNLLLHQEGA-----KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 167

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 16/159 (10%)

Query: 95  LKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRAL 154
           L    QD QR +     ++Q      ME++       L  +A D  N   +   ++    
Sbjct: 403 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF 462

Query: 155 QELL----------------ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWIL 198
            +LL                 L +  + A  +   G  + L   L+  +  +   +A +L
Sbjct: 463 VQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 522

Query: 199 GKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKAL 237
            + S++ P   K+ L +   S L +    ++ E A   L
Sbjct: 523 FRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGL 561

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 33/242 (13%), Positives = 78/242 (32%), Gaps = 51/242 (21%)

Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL 176
           +  +++ L  PS   LI+  +  + N  L+L  +  A                L + G +
Sbjct: 354 LPVVVKLLHPPSHWPLIKATVGLIRN--LALCPANHAP---------------LREQGAI 396

Query: 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE---------------------L 215
             LV  L     D ++ ++    +      +  ++++E                     L
Sbjct: 397 PRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL 456

Query: 216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEI 274
             +   ++++ S        A   +  L ++     E      G    L ++L + +  +
Sbjct: 457 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-EAAEAI-EAEGATAPLTELLHSRNEGV 514

Query: 275 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
                A ++        L  M + +P  ++ R  ++    L  +  +   E A   +   
Sbjct: 515 A--TYAAAV--------LFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIG 564

Query: 335 LQ 336
            Q
Sbjct: 565 AQ 566

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 63.9 bits (155), Expect = 4e-11
 Identities = 33/206 (16%), Positives = 72/206 (34%), Gaps = 8/206 (3%)

Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
             Q++   +  + N+   +E ++     L  L    +    + K GG+  LV  L  P  
Sbjct: 190 SPQMVSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVD 248

Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 248
            +   +   L     +    +  V   G L K++ ++  + V+        +  L   N 
Sbjct: 249 SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308

Query: 249 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 308
             + +     G   L +I+   ++E  L      ++  L+ C   N      P   +   
Sbjct: 309 ESKLIILASGGPQALVNIMRTYTYEK-LLWTTSRVLKVLSVCS-SN-----KPAIVEAGG 361

Query: 309 LKSVVDLTASADLDLQEKALAAIKNL 334
           ++++          L +  L  ++NL
Sbjct: 362 MQALGLHLTDPSQRLVQNCLWTLRNL 387

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 36/178 (20%), Positives = 66/178 (37%), Gaps = 12/178 (6%)

Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
                    G L  LV  L   D ++   +A IL   + NN   +  V ++G +  L++ 
Sbjct: 390 AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 449

Query: 225 VKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 279
           V  +       E A+ AL  ++S  ++    Q    +  G  ++  +L   S    +   
Sbjct: 450 VLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA- 508

Query: 280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337
            V L+ +LA C   N   +     R++  +  +V L   A  D Q +          +
Sbjct: 509 TVGLIRNLALCP-ANHAPL-----REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV 560

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 36/306 (11%), Positives = 95/306 (31%), Gaps = 19/306 (6%)

Query: 71  ELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQ--RLSPSELKKRQMEIKELMEKLKTPS 128
            L G  +  D  +   + +       ++    Q   +       R   ++  M       
Sbjct: 45  SLSGKGNPEDDDVDNQVLYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDE 104

Query: 129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 188
             Q+     D  + + +        + +  ++       +       +  L   LN  D 
Sbjct: 105 GMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQ 164

Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVSSLI 244
            +   +A ++ + S+        +     +S +++ ++++            L+ +S   
Sbjct: 165 VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-- 222

Query: 245 RNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 303
             +  G      ++G +  L ++LG+    +  H  A++ + +L   Q            
Sbjct: 223 --HREGLLAI-FKSGGIPALVNMLGSPVDSVLFH--AITTLHNLLLHQEGA-----KMAV 272

Query: 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 363
           R    L+ +V L    ++         ++ L        L++    G    +  +R    
Sbjct: 273 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 332

Query: 364 EVMLEE 369
           E +L  
Sbjct: 333 EKLLWT 338

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 30/196 (15%), Positives = 63/196 (32%), Gaps = 39/196 (19%)

Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
              N +    GL V+V  L+ P       +   L +     P     + E GA+ +L+++
Sbjct: 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538

Query: 225 VKSSFVEEAVKALYTVSSL-----------------IRNNLAGQEMFYVEAGDL----ML 263
           +  +  +   +     +                     + LA      +    L    + 
Sbjct: 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLF 598

Query: 264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTAS 318
             +L +    I+  R A  ++ +LA+ + E    +E      PL           +L  S
Sbjct: 599 VQLLYSPIENIQ--RVAAGVLCELAQDK-EAAEAIEAEGATAPL----------TELLHS 645

Query: 319 ADLDLQEKALAAIKNL 334
            +  +   A A +  +
Sbjct: 646 RNEGVATYAAAVLFRM 661

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 42/191 (21%), Positives = 85/191 (44%), Gaps = 20/191 (10%)

Query: 174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA 233
             L  +V QLN PD    + +   L + +       + V++ GAL  L++++ S   +  
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL 71

Query: 234 VKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 292
            +AL+ +S++       Q    ++AG L  L  +L + + +I   ++A+  + ++A    
Sbjct: 72  QEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPNEQIL--QEALWALSNIASGGN 128

Query: 293 ENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKD 347
           E +  V      P L          V L +S +  + ++AL A+ N+      +   +K+
Sbjct: 129 EQIQAVIDAGALPAL----------VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 178

Query: 348 FCGLDTALERL 358
              L+  LE+L
Sbjct: 179 AGALE-KLEQL 188

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 39/189 (20%), Positives = 81/189 (42%), Gaps = 20/189 (10%)

Query: 153 ALQEL-LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 211
           AL++L  I     +    +   G L  LV  L+ P+  I + + W L   +       + 
Sbjct: 32  ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91

Query: 212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNS 270
           V++ GAL  L++++ S   +   +AL+ +S++       Q    ++AG L  L  +L + 
Sbjct: 92  VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSP 150

Query: 271 SFEIRLHRKAVSLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLDLQE 325
           + +I   ++A+  + ++A    E    V+       L            L +  +  +Q+
Sbjct: 151 NEQIL--QEALWALSNIASGGNEQKQAVKEAGALEKL----------EQLQSHENEKIQK 198

Query: 326 KALAAIKNL 334
           +A  A++ L
Sbjct: 199 EAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 159 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218
           I     +    +   G L  LV  L+ P+  I + + W L   +      ++ V E GAL
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182

Query: 219 SKLMKMVKSS---FVEEAVKALYTVSS 242
            KL ++         +EA +AL  + S
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKLQS 209

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 37/220 (16%), Positives = 81/220 (36%), Gaps = 24/220 (10%)

Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGL 176
           +   +E LK   +  L   +   L N         R + +                 G +
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA----------------GAV 109

Query: 177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVK 235
            + +  L+    D+++ + W LG  + ++ + +  VL+   L  L+++    + +     
Sbjct: 110 PIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRN 169

Query: 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295
           A++ +S+L R      E   V     +L  +L  S  ++     A   +  L+    + +
Sbjct: 170 AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLAD--ACWALSYLSDGPNDKI 227

Query: 296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335
             V      D    + +V+L    D  +   AL A+ N++
Sbjct: 228 QAV-----IDAGVCRRLVELLMHNDYKVVSPALRAVGNIV 262

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 35/179 (19%), Positives = 67/179 (37%), Gaps = 6/179 (3%)

Query: 159 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218
           +   P D    +   G    LV  L H D  +   +   +G     + +  + +L   AL
Sbjct: 219 LSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSAL 278

Query: 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278
             L+ ++ S       +A +T+S++   N A  +          L  IL  + F  R  +
Sbjct: 279 QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTR--K 336

Query: 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337
           +A   + +          K       +   +K + DL    D  + + AL  ++N+L+L
Sbjct: 337 EAAWAITNATSGGSAEQIK----YLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 59.6 bits (144), Expect = 6e-10
 Identities = 51/300 (17%), Positives = 104/300 (34%), Gaps = 27/300 (9%)

Query: 44  AKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKETAQDVQ 103
           AK +       +   D    A+ +          S++ +++  I  ++     +  Q  +
Sbjct: 24  AKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVK-GINSNNLESQLQATQAAR 82

Query: 104 RLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILV 161
           +L   E +     I            A LI   +  L  +  S    +S  AL    I  
Sbjct: 83  KLLSREKQPPIDNI----------IRAGLIPKFVSFLGKTDCSPIQFESAWALTN--IAS 130

Query: 162 EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 221
              +    +   G +   +  L  P   I + + W LG  + +    +  V++ GA+  L
Sbjct: 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPL 190

Query: 222 MKMVKSSFVEEAVK-----ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRL 276
           + ++    +            +T+S+L RN      +  VE     L  +L ++  E+  
Sbjct: 191 LALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLA 250

Query: 277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336
              +   +  L     E +  V       +  +  +V L  + +L +   AL AI N++ 
Sbjct: 251 D--SCWAISYLTDGPNERIEMV-----VKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 8/223 (3%)

Query: 137 IDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISA 195
           +   + STL+    +     L  L    + A  L  +   L  LV  L+H D ++   S 
Sbjct: 194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSC 253

Query: 196 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 255
           W +   +       + V++ G + +L+K++ ++ +     AL  + +++       +   
Sbjct: 254 WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313

Query: 256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 315
                 +   +L N    I+  ++A   + ++   + + + +V      +   +  +V +
Sbjct: 314 DAGALAVFPSLLTNPKTNIQ--KEATWTMSNITAGRQDQIQQV-----VNHGLVPFLVGV 366

Query: 316 TASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358
            + AD   Q++A  AI N     T E +V    CG+   L  L
Sbjct: 367 LSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 409

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 37/253 (14%), Positives = 99/253 (39%), Gaps = 20/253 (7%)

Query: 87  IGHSDPAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS 146
           + H+DP  L ++   +  L+    ++ +M +              ++   +  L  + L 
Sbjct: 241 LHHNDPEVLADSCWAISYLTDGPNERIEMVV-----------KKGVVPQLVKLLGATELP 289

Query: 147 L-EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 205
           +   + RA+    I+    +    +   G L+V    L +P T+I+K + W +   +   
Sbjct: 290 IVTPALRAIGN--IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 347

Query: 206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM-LQ 264
               +QV+  G +  L+ ++  +  +   +A + +++        Q ++ V  G +  L 
Sbjct: 348 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407

Query: 265 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP--PLFRDRFFLKSVVDLTASADLD 322
           ++L     +I   +  +  + ++ +   E + + E    +  +   L  +  L    +  
Sbjct: 408 NLLSAKDTKII--QVILDAISNIFQAA-EKLGETEKLSIMIEECGGLDKIEALQRHENES 464

Query: 323 LQEKALAAIKNLL 335
           + + +L  I+   
Sbjct: 465 VYKASLNLIEKYF 477

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 33/179 (18%), Positives = 72/179 (40%), Gaps = 4/179 (2%)

Query: 159 ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGAL 218
           +   P +    +  +     LV  L+H  T ++  +   +G     N L  + V+  G L
Sbjct: 284 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVL 343

Query: 219 SKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 278
             L  ++ S       +A +T+S++   N    +   ++A  +     L     E +  +
Sbjct: 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAV-IDANLIPPLVKL-LEVAEYKTKK 401

Query: 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 337
           +A   + + +   L+    +       +  +K + DL   AD  + E  L A++N+L++
Sbjct: 402 EACWAISNASSGGLQRPDIIR--YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 28/172 (16%), Positives = 65/172 (37%), Gaps = 7/172 (4%)

Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
                +     + + +  L     ++++ + W LG  + ++   +  VL+  A+  ++ +
Sbjct: 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223

Query: 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 284
             S+       A +T+S+L R      +   V      L  ++ +   E  +   A   +
Sbjct: 224 FNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVD--ACWAI 281

Query: 285 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 336
             L+    E +         D    K +V+L +     +Q  AL A+ N++ 
Sbjct: 282 SYLSDGPQEAIQ-----AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 8e-10
 Identities = 70/449 (15%), Positives = 146/449 (32%), Gaps = 123/449 (27%)

Query: 27  RAERVNNSSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSS-IDGMLQW 85
            + +V       +FW   K             ++    +     ++D  ++S  D     
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNS--------PETVLEMLQKLLYQIDPNWTSRSDHSS-- 221

Query: 86  AIGHSDPAKLKETAQDVQRLSPSELKKRQMEI------KELMEK-------LKTPSDAQL 132
               +   ++     +++RL  S+  +  + +       +           L T    Q+
Sbjct: 222 ----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 133 IQIAIDDLNNST---LSLEDSQRAL-----QELLILVEPIDNANDLSK--LGG----LSV 178
                D L+ +T   +SL+     L     + LL+         DL +  L      LS+
Sbjct: 278 ----TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSI 332

Query: 179 LVGQL-NHPDT-------DIRKISAWILGKASQNN--PLVQKQVLELGAL--------SK 220
           +   + +   T       +  K++  I  ++S N   P   +++ +  ++        + 
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTII--ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 221 LMKMV----KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRL 276
           L+ ++      S V   V  L+  S + +      +   +    + L ++      E  L
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP----KESTISIPSIYL-ELKVKLENEYAL 445

Query: 277 HRKAVSLV--------GDLAKCQLEN---------MHKVEP----PLFRDRF----FLKS 311
           HR  V            DL    L+          +  +E      LFR  F    FL+ 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 312 VVDLTASADLDLQEKALAAIKNLLQ-LR-----------TTEALV--LKDF---CGLDTA 354
            +   ++A       A  +I N LQ L+             E LV  + DF      +  
Sbjct: 506 KIRHDSTA-----WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 355 LERLRQQLQEVMLEEDQRDYAMDVEALRR 383
             +    L+  ++ ED+  +    + ++R
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 52/440 (11%), Positives = 114/440 (25%), Gaps = 139/440 (31%)

Query: 39  LFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIGHSDPAKLKET 98
           LFW+                +      V +   ++  F     M         P+ +   
Sbjct: 67  LFWTL-----------LSKQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRM 111

Query: 99  -AQDVQRL--SPSELKKRQMEIKELMEKLKTP----SDAQLIQI-----------AIDDL 140
             +   RL        K  +   +   KL+        A+ + I           A+D  
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 141 NNS-------------TLSLEDSQRA----LQELLILVEP------------IDNANDLS 171
            +               L   +S       LQ+LL  ++P                + + 
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 172 KLGGLSVLVGQLNHPDT-----DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 226
               L  L+    + +      +++  +A                   L    K++   +
Sbjct: 232 A--ELRRLLKSKPYENCLLVLLNVQ--NAKAW------------NAFNLS--CKILLTTR 273

Query: 227 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIR-----LHRKAV 281
              V + + A  T    + ++         +    +L   L     ++       + + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 282 SLVGDLAK---CQLENMHKV----------------EPPLFRDRF-----FLKSVVDLTA 317
           S++ +  +      +N   V                EP  +R  F     F  S   +  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPT 389

Query: 318 S------ADLDLQEKALAAIKNLLQLRTTEALVLKDFCG---------LDTALERL-RQQ 361
                   D+   +  +  + N L   +   LV K             L+  ++      
Sbjct: 390 ILLSLIWFDVIKSDVMV--VVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYA 444

Query: 362 LQEVMLEEDQRDYAMDVEAL 381
           L   +++        D + L
Sbjct: 445 LHRSIVDHYNIPKTFDSDDL 464

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 56/362 (15%), Positives = 111/362 (30%), Gaps = 113/362 (31%)

Query: 15  LLVL------------------LMITMAIGRAERVNNSS-----------------SAGL 39
           LLVL                  L+ T      + ++ ++                    L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 40  FWSTAK----EDEDQPRKAERNDD---STAAAIVNDHDELDGGFSSIDGMLQWAIGHSDP 92
                K      +D PR+    +    S  A  + D        ++ D    W   H + 
Sbjct: 307 L---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG------LATWD---NWK--HVNC 352

Query: 93  AKLKETAQ-DVQRLSPSELKKR--QMEI--------KELMEKLKTPSDAQLIQIAIDDLN 141
            KL    +  +  L P+E +K   ++ +          L+  +        + + ++ L+
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 142 NSTLSLEDSQRALQEL----LILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 197
             +L  +  + +   +    L L   ++N   L +      +V   N P    +   +  
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-----SIVDHYNIP----KTFDSDD 463

Query: 198 LGKASQNNPLVQ------KQVLELGALSKLMKMV--KSSFVEEAVK----ALYTVSSLIR 245
           L     +           K  +E      L +MV     F+E+ ++    A     S++ 
Sbjct: 464 LIPPYLDQYFYSHIGHHLKN-IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL- 521

Query: 246 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 305
            N   Q  FY          I  N   + +  R    LV  +    L+ + K+E  L   
Sbjct: 522 -NTLQQLKFY-------KPYICDN---DPKYER----LVNAI----LDFLPKIEENLICS 562

Query: 306 RF 307
           ++
Sbjct: 563 KY 564

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 31/176 (17%), Positives = 66/176 (37%), Gaps = 19/176 (10%)

Query: 170 LSKLGGLSVLVGQLNHPDTDIRKISAWILGK-ASQNNPLVQKQVLELGALSKLMKMVKSS 228
            S  G +  LV QL     D++++ A +L   + + +   +K + E+G++  LM+     
Sbjct: 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 182

Query: 229 ----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-----MLQDILGNSSFEIRLHR- 278
                ++  + AL+ +S+    N   +       G L      L      ++  I     
Sbjct: 183 KKESTLKSVLSALWNLSAHCTEN---KADICAVDGALAFLVGTLTYRSQTNTLAIIESGG 239

Query: 279 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
             +  V  L     ++   +     R+   L++++    S  L +   A   + NL
Sbjct: 240 GILRNVSSLIATNEDHRQIL-----RENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 2/122 (1%)

Query: 130 AQLIQIAIDDLNNSTLS-LEDSQRALQELL-ILVEPIDNANDLSKLGGLSVLVGQLNHPD 187
           A L+         +TL+ +E     L+ +  ++    D+   L +   L  L+  L    
Sbjct: 217 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 276

Query: 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247
             I   +   L   S  NP  Q+ + ++GA+S L  ++ S     A+ +   + +L+ N 
Sbjct: 277 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336

Query: 248 LA 249
            A
Sbjct: 337 PA 338

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 30/224 (13%)

Query: 128 SDAQLIQIAIDDLNNSTLSL-EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP 186
           S    ++  +  L + +  L +     L+ L    +  ++   L ++G +  L+      
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV-NSKKTLREVGSVKALMECALEV 182

Query: 187 -DTDIRKISAWILGKASQNNPLVQKQ-VLELGALSKLMKMVKSSF-------VEEAVKAL 237
                 K     L   S +    +       GAL+ L+  +           +E     L
Sbjct: 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL 242

Query: 238 YTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 296
             VSSLI  N   +++   E   L  L   L + S  I     A   + +L+    ++  
Sbjct: 243 RNVSSLIATNEDHRQIL-RENNCLQTLLQHLKSHSLTIV--SNACGTLWNLSARNPKDQE 299

Query: 297 KVE-----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 335
            +        L           +L  S    +   + AA++NL+
Sbjct: 300 ALWDMGAVSML----------KNLIHSKHKMIAMGSAAALRNLM 333

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 28/211 (13%), Positives = 61/211 (28%), Gaps = 41/211 (19%)

Query: 150 SQRALQELLILVEPIDNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQN 204
                  L +L +         +       G+      +  P       +  +L K S  
Sbjct: 3   HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF- 61

Query: 205 NPLVQKQVLELGALSKLMKMVKSSF--------------VEEAVKALYTVSSLIRNNLAG 250
           +   +  + ELG L  + ++++                    A  AL   ++L   ++A 
Sbjct: 62  DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL---TNLTFGDVAN 118

Query: 251 QEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM------HKVEPPLF 303
           +       G +  L   L + S ++   +   S++ +L+     N             L 
Sbjct: 119 KATLCSMKGCMRALVAQLKSESEDL--QQVIASVLRNLSWRADVNSKKTLREVGSVKAL- 175

Query: 304 RDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
                   +            +  L+A+ NL
Sbjct: 176 --------MECALEVKKESTLKSVLSALWNL 198

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 24/168 (14%), Positives = 59/168 (35%), Gaps = 10/168 (5%)

Query: 176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVK 235
           +   V  L+  D   + I A+ +      +   ++QV +LG + KL+ +++S        
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 236 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 295
           A   + +L+  +   +     + G      +L  +     + ++   L+ +L+       
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKE 122

Query: 296 HKVE---PPLFR------DRFFLKSVVDLTASADLDLQEKALAAIKNL 334
             +    P L          +   +        D ++   A   ++NL
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL 170

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 132 LIQIAIDDLNNSTLS-LEDSQRALQELL-ILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 189
           L+         +TL+ +E     L+ +  ++    D+   L +   L  L+  L      
Sbjct: 335 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 394

Query: 190 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 247
           I   +   L   S  NP  Q+ + ++GA+S L  ++ S     A+ +   + +L+ N 
Sbjct: 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 32/171 (18%), Positives = 67/171 (39%), Gaps = 17/171 (9%)

Query: 174 GGLSVLVGQLNHPDTDIRKISAWILGK-ASQNNPLVQKQVLELGALSKLMKMVKSS---- 228
           G +  LV QL     D++++ A +L   + + +   +K + E+G++  LM+         
Sbjct: 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKES 302

Query: 229 FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK-----AVSL 283
            ++  + AL+ +S+    N A  ++  V+     L   L   S    L         +  
Sbjct: 303 TLKSVLSALWNLSAHCTENKA--DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360

Query: 284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 334
           V  L     ++   +     R+   L++++    S  L +   A   + NL
Sbjct: 361 VSSLIATNEDHRQIL-----RENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 28/192 (14%)

Query: 158 LILVEPIDNANDLSKLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLVQKQ-VLEL 215
           L     +++   L ++G +  L+            K     L   S +    +       
Sbjct: 270 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 329

Query: 216 GALSKLMKMVKSSF-------VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDIL 267
           GAL+ L+  +           +E     L  VSSLI  N   +++   E   L  L   L
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL-RENNCLQTLLQHL 388

Query: 268 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVE-----PPLFRDRFFLKSVVDLTASADLD 322
            + S  I     A   + +L+    ++   +        L           +L  S    
Sbjct: 389 KSHSLTIV--SNACGTLWNLSARNPKDQEALWDMGAVSML----------KNLIHSKHKM 436

Query: 323 LQEKALAAIKNL 334
           +   + AA++NL
Sbjct: 437 IAMGSAAALRNL 448

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 46.5 bits (110), Expect = 5e-06
 Identities = 17/123 (13%), Positives = 48/123 (39%), Gaps = 5/123 (4%)

Query: 130 AQLIQIAIDDLNNSTLSLEDSQRALQELLIL-VEPIDNANDLSKLGGLSVLVGQLNHPDT 188
              ++ A+  L    +       A   +     +  +    +++L G+  L+  L   + 
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66

Query: 189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----FVEEAVKALYTVSSLI 244
           D+++     L      +   + +V EL  + +L++++K +      ++    L+ +SS  
Sbjct: 67  DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126

Query: 245 RNN 247
           +  
Sbjct: 127 KLK 129

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 47.5 bits (112), Expect = 6e-06
 Identities = 28/222 (12%), Positives = 68/222 (30%), Gaps = 16/222 (7%)

Query: 143 STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGK-- 200
            T S    +   + L  +    +    + + GG+  L+          ++ +   L +  
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564

Query: 201 ASQNNPLVQKQVLELGALSKLMKMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYV 256
            + N  +       L  +  L+ +++         E++ AL  ++S+  +    ++    
Sbjct: 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV---RQRIIK 621

Query: 257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 316
           E G   ++  L      + L R A   + +L          V      +   +K +  L 
Sbjct: 622 EQGVSKIEYYL--MEDHLYLTRAAAQCLCNLVMS-----EDVIKMFEGNNDRVKFLALLC 674

Query: 317 ASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 358
              D +       A+  +  +       +         L  L
Sbjct: 675 EDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTL 716

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 44.6 bits (104), Expect = 4e-05
 Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 6/153 (3%)

Query: 142 NSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 201
                L   +R     L  +          +   L  ++  L      ++  +A  L   
Sbjct: 16  YYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHL 75

Query: 202 SQNNPLVQKQVLELGALSKLMKMVKSSFV---EEAVKALYTVSSLIRNNLAGQEMFYVEA 258
              N  V+  V +L  +  L+ ++          A  AL  +S     +   +       
Sbjct: 76  CYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS--FGRDQDNKIAIKNCD 133

Query: 259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 291
           G   L  +L  +     L       + +L+   
Sbjct: 134 GVPALVRLLRKARDM-DLTEVITGTLWNLSSHD 165

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 25/150 (16%), Positives = 52/150 (34%), Gaps = 5/150 (3%)

Query: 129 DAQLIQIAIDDLNNSTLSLE-DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD 187
             + + + +  L      +     + L  LL  + P      L    G+S L+  L    
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEE----AVKALYTVSSL 243
             IR     +L   +++N  +QK V    A  +L+ ++      +        L  + +L
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239

Query: 244 IRNNLAGQEMFYVEAGDLMLQDILGNSSFE 273
           ++NN + Q  F   +    ++         
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDEN 269

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.91
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.9
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.9
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.9
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.9
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.9
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.89
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.89
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.89
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.89
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.88
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.88
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.88
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.87
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.86
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.86
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.86
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.86
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.85
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.85
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.84
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.83
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.83
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.83
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.82
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.82
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.8
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.79
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.78
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.74
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.73
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.67
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.47
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.46
3grl_A	651	General vesicular transport factor P115; vesicle t	99.4
3grl_A	651	General vesicular transport factor P115; vesicle t	99.2
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.96
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.92
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	98.84
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	98.82
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.81
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.76
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	98.71
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.43
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.42
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.37
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.33
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.32
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.31
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.31
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.31
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.3
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.28
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.14
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.13
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.06
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.03
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.01
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.99
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	97.96
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.94
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	97.94
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	97.83
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.79
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.79
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.77
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.69
1qgr_A	876	Protein (importin beta subunit); transport recepto	97.69
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.67
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.46
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.34
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.31
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.21
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.15
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.08
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	96.75
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.38
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.93
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	95.87
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	95.59
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.57
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.53
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.04
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	94.96
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.92
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.86
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.79
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	94.41
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	94.31
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	94.3
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.11
2x19_B	963	Importin-13; nuclear transport, protein transport;	93.94
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	93.4
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	93.02
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	92.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	92.89
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	92.83
2x19_B	963	Importin-13; nuclear transport, protein transport;	92.61
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	92.52
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	92.36
2x1g_F	971	Cadmus; transport protein, developmental protein,	92.08
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.99
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	91.92
2x1g_F	971	Cadmus; transport protein, developmental protein,	91.25
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	91.01
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	90.71
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	90.38
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	89.97
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	89.81
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	89.76
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	89.52
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	87.58
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	87.08
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	86.79
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	86.63
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	86.34
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	85.97
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	85.9
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	85.84
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	85.62
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	84.95
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	84.06
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	83.21
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	82.6
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	82.22

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=100.00  E-value=1.7e-38  Score=311.00  Aligned_cols=263  Identities=24%  Similarity=0.287  Sum_probs=215.6

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHhhcC----------CCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hc
Q 015496          115 MEIKELMEKLKTPSDAQLIQIAIDDLNNS----------TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QL  183 (405)
Q Consensus       115 ~~L~~a~~~~~~~~d~~lmk~al~~L~~~----------~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~-lL  183 (405)
                      .||.++|+  ++||++++||+++.+|.++          +.+.++|..|++.|.++++++|||++|++.||+|+|+. +|
T Consensus        14 ~~~~~~~~--~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL   91 (296)
T 1xqr_A           14 VPRGSHMR--GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL   91 (296)
T ss_dssp             ------CC--SCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTT
T ss_pred             HHHHHHHc--CCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHH
Confidence            57777775  4589999999999999997          44668999999999999999999999999999999999 99


Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496          184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  262 (405)
Q Consensus       184 ~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~  262 (405)
                      +++++.+|..|+|+||++++|||.+|+.+++.|++|+|+.+|+++ +..++++|+|||||++|++++..+.|.+.||+++
T Consensus        92 ~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~  171 (296)
T 1xqr_A           92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV  171 (296)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHH
Confidence            999999999999999999999999999999999999999999864 6889999999999999999999999999999999


Q ss_pred             HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhH
Q 015496          263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA  342 (405)
Q Consensus       263 L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~  342 (405)
                      |+.+|+++  +.+++++|+|+|++|+.+     +++.+..+++.|+++.|+.+|.++|.+++++++++|.+|+.+.+...
T Consensus       172 L~~lL~~~--d~~v~~~A~~aLs~L~~~-----~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~  244 (296)
T 1xqr_A          172 LMRAMQQQ--VQKLKVKSAFLLQNLLVG-----HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV  244 (296)
T ss_dssp             HHHHHHSS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCC--CHHHHHHHHHHHHHHHhC-----ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHH
Confidence            99999986  789999999999999963     56788899999999999999999999999999999999998744333


Q ss_pred             HHHHhcCCchHHHHHHHHHHHHhhhchhhhh-hHHHHHHHHHHHHHHHhhh
Q 015496          343 LVLKDFCGLDTALERLRQQLQEVMLEEDQRD-YAMDVEALRREVELIFFRK  392 (405)
Q Consensus       343 ~~v~~~~Gl~~~L~~L~~~~~~l~~~~~q~~-~~~d~~~l~~e~~~~~~~k  392 (405)
                      ..+. . +-......|...++.+-.    ++ +-..++......+.+|.+.
T Consensus       245 ~~~~-~-~~~~l~~lL~~~~~~lq~----~e~~~e~~~~~~~il~~~f~~~  289 (296)
T 1xqr_A          245 RECR-E-PELGLEELLRHRCQLLQQ----HEEYQEELEFCEKLLQTCFSSP  289 (296)
T ss_dssp             HHHH-C-GGGCHHHHHHHHHHHHTT----CGGGHHHHHHHHHHHHHHCC--
T ss_pred             HHHh-c-cHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHHHHcCCC
Confidence            3332 1 112233344333333321    22 3333455666667777543

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=5.6e-26  Score=236.34  Aligned_cols=262  Identities=17%  Similarity=0.223  Sum_probs=221.0

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ  209 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn--A~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q  209 (405)
                      +.+.++.+.+.  +++.+..|...++.++....|  .+.+++.|++|+||++|+ ++++.+|..|+|+|+|++.+|++.+
T Consensus        59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            55666777654  678899999999998755444  578999999999999997 5679999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHH
Q 015496          210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGD  286 (405)
Q Consensus       210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~---~~~kl~~kA~~lLs~  286 (405)
                      +.+++.|++|.|+++|++++..++..|+|||+||+.+++..++.+.+.||+++|+.++.++.   ....+++.++|++++
T Consensus       137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  216 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  216 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998653   235678999999999


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----H
Q 015496          287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----L  362 (405)
Q Consensus       287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~  362 (405)
                      ++.++     ..........++++.|+.+|.+++.+++..++++|.+|+..+.+..+.+. ..|+.+.|..|..+    .
T Consensus       217 l~~~~-----~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v  290 (510)
T 3ul1_B          217 LCRNK-----NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV-KKGVVPQLVKLLGATELPI  290 (510)
T ss_dssp             HHCCC-----SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH-TTTCHHHHHHHHTCSCHHH
T ss_pred             Hhhcc-----cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHH-hcccchhhhhhhcCCChhh
Confidence            99742     12222334468999999999999999999999999999998877777777 66666666665521    1


Q ss_pred             --------HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          363 --------QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       363 --------~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                              ..+.+ ++.+++++.+.++++....++.+++ ..|++++||+
T Consensus       291 ~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~v~~~A~~a  339 (510)
T 3ul1_B          291 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWT  339 (510)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCC-HHHHHHHHHH
Confidence                    12344 6789999999999999999999999 8999999996

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.94  E-value=3.6e-25  Score=230.93  Aligned_cols=262  Identities=17%  Similarity=0.217  Sum_probs=221.2

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ  209 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q  209 (405)
                      +.+.++.+.+.  +++.+..|+..+..++..-.  ....+++.|++|+|+.+|. ++++.+|..|+|+|++++.+++..+
T Consensus        78 l~~lv~~l~s~--d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           78 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             HHHHHHHHTSS--CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            45556666554  67889999999998875443  3578999999999999996 5679999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHH
Q 015496          210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGD  286 (405)
Q Consensus       210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~---~~~kl~~kA~~lLs~  286 (405)
                      +.+++.|++|.|+.+|.+++..++..|+|||+||+.+++..++.+++.||+++|+.+|..+.   ....+++.++|++++
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998652   235678999999999


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----H
Q 015496          287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----L  362 (405)
Q Consensus       287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~  362 (405)
                      ++.++     ..........++++.|+.+|.+++.+++..++++|.+|+..+.+..+.+. ..|+.+.|..|..+    .
T Consensus       236 l~~~~-----~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~-~~g~i~~Lv~lL~~~~~~v  309 (529)
T 3tpo_A          236 LCRNK-----NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV-KKGVVPQLVKLLGATELPI  309 (529)
T ss_dssp             HHCCC-----TTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH-TTTCHHHHHHHHTCSCHHH
T ss_pred             HHhcc-----cchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHH-hccchHHHHHHhcCCChhH
Confidence            99752     12222334468999999999999999999999999999998887778887 66666666665521    1


Q ss_pred             --------HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          363 --------QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       363 --------~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                              ..+.+ ++.+++.+.+.++++...+++.+++ ..|++++||+
T Consensus       310 ~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~-~~i~~~a~~a  358 (529)
T 3tpo_A          310 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWT  358 (529)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCC-HHHHHHHHHH
Confidence                    22444 6789999999999999999999999 8999999996

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.91  E-value=1.9e-22  Score=186.54  Aligned_cols=216  Identities=18%  Similarity=0.225  Sum_probs=191.2

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD-nA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      +...++.+.+++  .+.+..|+..|..++...+ +...+.+.|++++|+.+|+++++++|..|+++|++++.+++..+..
T Consensus         4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            455667777654  7889999999999987664 8899999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496          212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ  291 (405)
Q Consensus       212 vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~  291 (405)
                      +++.|+++.|+.+++++++.++..|+++|++++.+++.....+.+.|+++.|+.+++++  +..++..++++|.+|+.. 
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~-  158 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASG-  158 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS-
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC-
Confidence            99999999999999999999999999999999999999999999999999999999986  678999999999999852 


Q ss_pred             hccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496          292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL  358 (405)
Q Consensus       292 ~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L  358 (405)
                          ++.....+.+.|+++.|+.+|.+++..+++.++++|.+|+......++.+. ..|+.+.|..+
T Consensus       159 ----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~l  220 (252)
T 4hxt_A          159 ----PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKL  220 (252)
T ss_dssp             ----CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHHG
T ss_pred             ----CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHH
Confidence                445556788899999999999999999999999999999987677777777 55554444444

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.90  E-value=9e-24  Score=211.37  Aligned_cols=249  Identities=12%  Similarity=0.101  Sum_probs=204.5

Q ss_pred             HHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496          147 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVLEL  215 (405)
Q Consensus       147 ~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s-----------~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~  215 (405)
                      .+++..|+..|.++.-+.++...|++.||+++|+.+|.+           .++++|+.|+|+|.+++.+++..+..|...
T Consensus        46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            356677888888888888899999999999999999942           357899999999999999998888888655


Q ss_pred             -CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCcHHHHHHhh-cCCCccHHHHHHHHHHHHHHhhchh
Q 015496          216 -GALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDIL-GNSSFEIRLHRKAVSLVGDLAKCQL  292 (405)
Q Consensus       216 -G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~-~~~~~~~f~~~gGi~~L~~lL-~s~~~~~kl~~kA~~lLs~L~~~~~  292 (405)
                       |+||.|+++|++++++++..|+|||+|+..+ ++..+..+.+.||+++|+.+| +++  +..+++.|+.+|.+|+..  
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nLs~~--  201 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNLSAH--  201 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTT--
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHHcc--
Confidence             5599999999999999999999999999985 677899999999999999985 444  567899999999999852  


Q ss_pred             ccCCCCcchhHH-hCCcHHHHHHhccCCCh----HHHHHHHHHHHHHhc---CChhhHHHHHhcCCchHHHHHHHH---H
Q 015496          293 ENMHKVEPPLFR-DRFFLKSVVDLTASADL----DLQEKALAAIKNLLQ---LRTTEALVLKDFCGLDTALERLRQ---Q  361 (405)
Q Consensus       293 ~~~~~~~~~~l~-~~g~l~~Lv~LL~~~D~----~v~E~al~aL~~L~~---~~~~~~~~v~~~~Gl~~~L~~L~~---~  361 (405)
                         .++.+..+. ..|.++.|+++|.+++.    ++++.++++|.+|+.   ..++.++.+.+.+++++++..|+.   .
T Consensus       202 ---~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~  278 (354)
T 3nmw_A          202 ---CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT  278 (354)
T ss_dssp             ---CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHH
T ss_pred             ---ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChH
Confidence               334455666 78999999999987654    599999999999996   567788888855555555555542   1


Q ss_pred             HHH--------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          362 LQE--------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       362 ~~~--------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                      .+.        +.. +.+|++++.+.++++..++++.... .++++++||.
T Consensus       279 v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~a  328 (354)
T 3nmw_A          279 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAA  328 (354)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHH
Confidence            111        332 5779999999999999999998777 7899999995

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.90  E-value=5.2e-22  Score=205.41  Aligned_cols=260  Identities=17%  Similarity=0.226  Sum_probs=218.5

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCChHhH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPD-TDIRKISAWILGKASQNNPLVQ  209 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~~~~~Ggi~~Lv~lL~s~~-~~Ir~~Aa~~Lg~~aqNN~~~Q  209 (405)
                      +...++.|.++  +++.+..|+..|..++...  ++...++..|++|.|+.+|.+++ +.+|..|+|+|++++.+++..+
T Consensus        76 l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           76 LPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            56667777654  5788999999999886543  56788999999999999999876 9999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      ..+++.|++|.|+.+|.++++.++..|+|+|++++.+++..+..+...|+++.|+.+|..+ .+..+++.++|+|++|+.
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~  232 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCR  232 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999544 367899999999999996


Q ss_pred             chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----H---
Q 015496          290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----L---  362 (405)
Q Consensus       290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~---  362 (405)
                      ..     +. .......|+++.|+.+|.++|.++++.++++|.+|+...+...+.+. ..|+.+.|..+...    .   
T Consensus       233 ~~-----~~-~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~-~~g~v~~Lv~lL~~~~~~v~~~  305 (528)
T 4b8j_A          233 GK-----PQ-PSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHPSPSVLIP  305 (528)
T ss_dssp             SS-----SC-CCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHH-HTTCHHHHHHHTTCSCHHHHHH
T ss_pred             CC-----CC-CcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCHHHHHHHHHcCCChhHHHH
Confidence            41     22 22344589999999999999999999999999999988776667777 44555555554421    1   


Q ss_pred             -----HHhhh-chhhhhhHHHHHHHHHHHHHHHhh-hccccccchhcc
Q 015496          363 -----QEVML-EEDQRDYAMDVEALRREVELIFFR-KLGKVGTRLCWN  403 (405)
Q Consensus       363 -----~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~-kl~~i~~~~~~~  403 (405)
                           ..+.. ++.+++.+.+.+.++...+++.+. + ..+++++||+
T Consensus       306 a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~-~~v~~~A~~~  352 (528)
T 4b8j_A          306 ALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLK-KSIKKEACWT  352 (528)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCc-HHHHHHHHHH
Confidence                 11333 567888888999999999999988 6 7999999996

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.90  E-value=1.5e-22  Score=183.96  Aligned_cols=191  Identities=18%  Similarity=0.266  Sum_probs=174.2

Q ss_pred             HHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496          137 IDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL  215 (405)
Q Consensus       137 l~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~  215 (405)
                      ...+.+.  +.+.+..|+..|.++. .+.++...+.+.|+++.|+++|+++++.+|..|+|+|++++.+++..++.+++.
T Consensus        18 ~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~   95 (210)
T 4db6_A           18 VQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA   95 (210)
T ss_dssp             HHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence            3444443  5788899999999998 556778899999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496          216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  295 (405)
Q Consensus       216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~  295 (405)
                      |++|.|+.+|+++++.++..|+|+|++++.+++...+.+++.|+++.|+.+++++  +..++..|+++|.+|+..     
T Consensus        96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~-----  168 (210)
T 4db6_A           96 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG-----  168 (210)
T ss_dssp             TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTS-----
T ss_pred             CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC-----
Confidence            9999999999999999999999999999999999999999999999999999986  678999999999999953     


Q ss_pred             CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496          296 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       296 ~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~  336 (405)
                      +++.+..+.+.|+++.|++++.+++.++++.|+.+|.+|++
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            45667788899999999999999999999999999999974

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.90  E-value=2.8e-22  Score=206.05  Aligned_cols=175  Identities=13%  Similarity=0.114  Sum_probs=145.6

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      +...+..|.++  +++.+..|+..|..++..-++ ...+.+.||+|+|+.+|+++++.+|..|+|+|.+++.+|++++..
T Consensus         4 l~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            34456667665  457899999999998866555 449999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc--------CCC------ccHHH
Q 015496          212 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG--------NSS------FEIRL  276 (405)
Q Consensus       212 vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~--------s~~------~~~kl  276 (405)
                      +++.|++|+|+++|+ +++++++..|+|+|+|++.+ +..+..+++ ||+++|+.+|.        ++.      .+..+
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v  159 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence            999999999999999 77889999999999999988 778888999 99999999993        221      24667


Q ss_pred             HHHHHHHHHHHhhchhccCCCCcchhHHhC-CcHHHHHHhcc
Q 015496          277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTA  317 (405)
Q Consensus       277 ~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~-g~l~~Lv~LL~  317 (405)
                      ++.|+|+|+||+..      ++.+..+.+. |+++.|+.+|.
T Consensus       160 ~~~a~~aL~nLs~~------~~~~~~i~~~~g~i~~Lv~lL~  195 (457)
T 1xm9_A          160 FFNATGCLRNLSSA------DAGRQTMRNYSGLIDSLMAYVQ  195 (457)
T ss_dssp             HHHHHHHHHHHTTS------HHHHHHHTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccC------HHHHHHHHHcCCCHHHHHHHHH
Confidence            88999999999952      4455566665 66666665554

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.90  E-value=2.6e-22  Score=187.17  Aligned_cols=205  Identities=18%  Similarity=0.244  Sum_probs=177.8

Q ss_pred             CHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496          146 SLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  224 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lv-e~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L  224 (405)
                      +.+.+..|+..|..++ .+.++...+.+.|++++|+.+|+++++++|..|+++|++++.+++..+..+++.|++|.|+.+
T Consensus        25 ~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l  104 (252)
T 4db8_A           25 DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL  104 (252)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHH
Confidence            3467778888885544 345567789999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496          225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  304 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~  304 (405)
                      |+++++.++..|+++|++++.+.+.....+.+.|+++.|+.+|+++  +..++..|+++|.+|+..     +++....+.
T Consensus       105 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~-----~~~~~~~~~  177 (252)
T 4db8_A          105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASG-----GNEQIQAVI  177 (252)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTS-----CHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcC-----ChHHHHHHH
Confidence            9999999999999999999988777668999999999999999886  678999999999999952     445666788


Q ss_pred             hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496          305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL  358 (405)
Q Consensus       305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L  358 (405)
                      +.|+++.|+.+|.+++..+++.++++|.+|+...++.++.+. ..|+.+.|..+
T Consensus       178 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~l  230 (252)
T 4db8_A          178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQL  230 (252)
T ss_dssp             HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHTT
T ss_pred             HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHH
Confidence            899999999999999999999999999999987777777777 55554444433

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.89  E-value=7.5e-22  Score=205.81  Aligned_cols=261  Identities=15%  Similarity=0.169  Sum_probs=217.2

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      +...++.|... .+++.+..|...|.+++.. .++...+++.|++|+|+.+|.++++++|..|+|+|++++.+++..+..
T Consensus       121 ip~Lv~lL~~~-~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~  199 (529)
T 3tpo_A          121 IPKFVSFLGKT-DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDL  199 (529)
T ss_dssp             HHHHHHHHTCT-TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHH
Confidence            34456666544 3577888899999998754 457788999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496          212 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD  286 (405)
Q Consensus       212 vle~G~lp~Ll~LL~s~~-----~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~  286 (405)
                      +++.|++++|+.++.+++     ..+...++|+|++++++..+........|+++.|+.++.++  +..++..|+|+|++
T Consensus       200 i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~a~~aL~~  277 (529)
T 3tpo_A          200 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISY  277 (529)
T ss_dssp             HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred             HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC--cHHHHHHHHHHHHH
Confidence            999999999999998754     34577899999999999877666666678999999999986  67789999999999


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH----HH
Q 015496          287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ----QL  362 (405)
Q Consensus       287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~----~~  362 (405)
                      |+.+     +++....+.+.|+++.|+.+|.+++..+++.++++|.+|+.+.+..++.+. ..|+.+.|..|..    ..
T Consensus       278 l~~~-----~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL~~~~~~i  351 (529)
T 3tpo_A          278 LTDG-----PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNI  351 (529)
T ss_dssp             HHSS-----CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHTTCSSHHH
T ss_pred             hhhh-----hhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHh-hcccHHHHHHHHcCCCHHH
Confidence            9852     445566788899999999999999999999999999999998877788887 4555455554442    22


Q ss_pred             HH--------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          363 QE--------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       363 ~~--------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                      +.        +.. +.+|.+.+.+.+.++..+.++.+.. ..+++++||.
T Consensus       352 ~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~a  400 (529)
T 3tpo_A          352 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWA  400 (529)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHH
Confidence            11        223 5778889999999999999999888 6899999995

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.89  E-value=1.4e-22  Score=221.15  Aligned_cols=264  Identities=9%  Similarity=-0.001  Sum_probs=213.6

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh---
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP---  206 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~-~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~---  206 (405)
                      .+.+.+...|.++..+.+.+..|.+.|.+|..+.+....++. .|++|+|+.+|+++++.++..|+|+|+|++.+++   
T Consensus       377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~  456 (810)
T 3now_A          377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE  456 (810)
T ss_dssp             HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence            456667777777655668899999999999999888888886 6899999999999999999999999999998653   


Q ss_pred             --------------------------HhH---HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015496          207 --------------------------LVQ---KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE  257 (405)
Q Consensus       207 --------------------------~~Q---~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~  257 (405)
                                                .++   +.+++.|++|.|+.+++++++.+++.|+|+|+|++. ++..+..++++
T Consensus       457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~  535 (810)
T 3now_A          457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQE  535 (810)
T ss_dssp             CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHT
T ss_pred             hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence                                      234   788999999999999999999999999999999996 46799999999


Q ss_pred             CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc-hhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHh
Q 015496          258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLL  335 (405)
Q Consensus       258 gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~-~~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~  335 (405)
                      ||+++|+.+|+++  +...|+.|+|+|++|+.+    .+++.. ..-...|+++.|+++|.++ +...+..|++||.+|+
T Consensus       536 Gaip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~----~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa  609 (810)
T 3now_A          536 GGVKALLRMALEG--TEKGKRHATQALARIGIT----INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA  609 (810)
T ss_dssp             THHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHccC--CHHHHHHHHHHHHHHhcC----CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence            9999999999986  567899999999999964    232210 0001236999999999876 4445578999999999


Q ss_pred             cCChhhHHHHHhcCCchHHHHHHHHHH------------HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhc
Q 015496          336 QLRTTEALVLKDFCGLDTALERLRQQL------------QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCW  402 (405)
Q Consensus       336 ~~~~~~~~~v~~~~Gl~~~L~~L~~~~------------~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~  402 (405)
                      ..+++.++.+.+. |..+.|..|..+-            ..+++ ++.|++++.+.+.++..+.++.+.+ .++++++||
T Consensus       610 ~~~d~~~~~Ii~a-G~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d-~~vq~~Aa~  687 (810)
T 3now_A          610 SMNESVRQRIIKE-QGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDED-EETATACAG  687 (810)
T ss_dssp             TSCHHHHHHHHHT-THHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSS-HHHHHHHHH
T ss_pred             cCCHHHHHHHHHc-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCC-HHHHHHHHH
Confidence            9887777777744 4455555554321            12444 5677888744789999999999988 799999999


Q ss_pred             c
Q 015496          403 N  403 (405)
Q Consensus       403 ~  403 (405)
                      +
T Consensus       688 A  688 (810)
T 3now_A          688 A  688 (810)
T ss_dssp             H
T ss_pred             H
Confidence            6

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.89  E-value=4.9e-22  Score=206.63  Aligned_cols=261  Identities=15%  Similarity=0.181  Sum_probs=215.6

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      +...++.|.+.+ +++-+..|...|.+++. +.++...+++.|++|+|+.+|+++++++|..|+|+|++++.+++..+..
T Consensus       102 ip~LV~lL~~~~-~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~  180 (510)
T 3ul1_B          102 IPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL  180 (510)
T ss_dssp             HHHHHHHTTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            344566666543 56788889999999864 5578889999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496          212 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD  286 (405)
Q Consensus       212 vle~G~lp~Ll~LL~s~~-----~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~  286 (405)
                      +++.|++++|+.++.+++     ..+...++|++++++++..+........|+++.|+.++.++  +..++..|+|+|++
T Consensus       181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~  258 (510)
T 3ul1_B          181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISY  258 (510)
T ss_dssp             HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHH
T ss_pred             HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence            999999999999998754     34577899999999998766666666678899999999986  67799999999999


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH----HH
Q 015496          287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ----QL  362 (405)
Q Consensus       287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~----~~  362 (405)
                      |+.+     +++....+.+.|+++.|+.+|.+++..+++.++++|.+++...+..++.+. ..|+.+.|..|..    ..
T Consensus       259 L~~~-----~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL~~~~~~v  332 (510)
T 3ul1_B          259 LTDG-----PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNI  332 (510)
T ss_dssp             HTSS-----CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGCC-CTTCSSHHH
T ss_pred             Hhhc-----hhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHh-hccchHHHHHHhcCCCHHH
Confidence            9852     345566788899999999999999999999999999999998877777887 4454444444431    11


Q ss_pred             HH--------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          363 QE--------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       363 ~~--------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                      +.        +.. +.+|.+.+.+.+.++..++++.+.- ..+++++||.
T Consensus       333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~Aa~a  381 (510)
T 3ul1_B          333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKEAAWA  381 (510)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHH
Confidence            11        323 5778899999999999999998887 6899999995

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.89  E-value=1.4e-21  Score=180.75  Aligned_cols=222  Identities=16%  Similarity=0.158  Sum_probs=191.9

Q ss_pred             cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 015496          173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE  252 (405)
Q Consensus       173 ~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~  252 (405)
                      +|+++.|+.+|+++++++|..|+++|++++.+++..+..+++.|+++.|+++++++++.++..|+++|++++.+++..+.
T Consensus         1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999899999


Q ss_pred             HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496          253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK  332 (405)
Q Consensus       253 ~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~  332 (405)
                      .+.+.||++.|+.+|+++  +..++..|+++|.+|+.     .+++....+.+.|+++.|+++|.+++..++..++++|.
T Consensus        81 ~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~  153 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS-----GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA  153 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999976  67899999999999995     24567778889999999999999999999999999999


Q ss_pred             HHhcCChhhHHHHHhcCCchHHHHHHHH----HHH--------Hhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccc
Q 015496          333 NLLQLRTTEALVLKDFCGLDTALERLRQ----QLQ--------EVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTR  399 (405)
Q Consensus       333 ~L~~~~~~~~~~v~~~~Gl~~~L~~L~~----~~~--------~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~  399 (405)
                      +|+...+..++.+. ..|+.+.|..+..    ..+        .+.. +..++++..+.+.++...+++.++. ..++++
T Consensus       154 ~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~  231 (252)
T 4hxt_A          154 NIASGPDEAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTD-SEVQKE  231 (252)
T ss_dssp             HHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHH
T ss_pred             HHHcCCHHHHHHHH-HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCc-HHHHHH
Confidence            99987777767777 4565555555542    111        1233 5667778888888888888888776 688999


Q ss_pred             hhcc
Q 015496          400 LCWN  403 (405)
Q Consensus       400 ~~~~  403 (405)
                      ++|.
T Consensus       232 a~~~  235 (252)
T 4hxt_A          232 AQRA  235 (252)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9885

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.88  E-value=6.4e-21  Score=197.77  Aligned_cols=260  Identities=14%  Similarity=0.166  Sum_probs=216.3

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHhH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLVQ  209 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~~~~~Ggi~~Lv~lL~s~-~~~Ir~~Aa~~Lg~~aqNN~~~Q  209 (405)
                      +...++.|.+.  +++.+..|+..|..++...  .+...+++.|++|.|+.+|.++ ++.+|..|+|+|++++.+++..+
T Consensus        89 i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~  166 (530)
T 1wa5_B           89 LPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  166 (530)
T ss_dssp             HHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            44555666654  5788999999999987643  3456788999999999999986 89999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      ..+++.|++|.|+.+|.++++.++..|+|+|++++.+++...+.+...|+++.|+.++.+.  +..+++.|+|+|++|+.
T Consensus       167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhC
Confidence            9999999999999999998999999999999999999899999999999999999999984  67899999999999996


Q ss_pred             chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----H---
Q 015496          290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----L---  362 (405)
Q Consensus       290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~---  362 (405)
                      +.    + .........++++.|+.+|.++|..++..++++|.+|+....+..+.+. ..|+.+.|..+..+    .   
T Consensus       245 ~~----~-~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~Lv~lL~~~~~~v~~~  318 (530)
T 1wa5_B          245 GK----K-PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSHESTLVQTP  318 (530)
T ss_dssp             CS----S-SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHH
T ss_pred             CC----C-CCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHH-hcCcHHHHHHHHCCCChhhHHH
Confidence            41    1 2223455689999999999999999999999999999987766667776 45555555444321    1   


Q ss_pred             -----HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          363 -----QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       363 -----~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                           ..+.. ++.+++.+.+.+.++....++.++. ..+++++||+
T Consensus       319 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~vr~~A~~a  364 (530)
T 1wa5_B          319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWT  364 (530)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCC-HHHHHHHHHH
Confidence                 11333 4667888888899999999999987 7999999995

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.88  E-value=2.3e-21  Score=176.07  Aligned_cols=181  Identities=19%  Similarity=0.202  Sum_probs=160.2

Q ss_pred             HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q 015496          171 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG  250 (405)
Q Consensus       171 ~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~  250 (405)
                      ...|+.++|+.+|+++++++|..|+|+|++++.+++..+..+++.|++|.|+++|+++++.++..|+++|++++.+++..
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            44688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015496          251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA  330 (405)
Q Consensus       251 ~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~a  330 (405)
                      .+.+++.||++.|+.+|+++  +..++..|+++|.+|+.     .+++....+.+.|+++.|+++|.+++..+++.++++
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a  161 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA  161 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHc-----CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence            99999999999999999987  67899999999999995     245566678899999999999999999999999999


Q ss_pred             HHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496          331 IKNLLQLRTTEALVLKDFCGLDTALERLR  359 (405)
Q Consensus       331 L~~L~~~~~~~~~~v~~~~Gl~~~L~~L~  359 (405)
                      |.+|+..++..+..+. ..|+.+.|..+.
T Consensus       162 L~~l~~~~~~~~~~~~-~~g~i~~L~~ll  189 (210)
T 4db6_A          162 LSNIASGGNEQKQAVK-EAGALEKLEQLQ  189 (210)
T ss_dssp             HHHHHTSCHHHHHHHH-HTTHHHHHHHGG
T ss_pred             HHHHHcCCcHHHHHHH-HCCCHHHHHHHH
Confidence            9999998777777777 556655544443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.88  E-value=1.4e-21  Score=195.39  Aligned_cols=209  Identities=17%  Similarity=0.165  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHHHHccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHH
Q 015496          147 LEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMK  223 (405)
Q Consensus       147 ~e~k~~AL~~L~~Lve~iD-nA~~~~~~Gg-i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~  223 (405)
                      ++-+..|...|.+++..-+ +...+...|| +|+|+.+|+++++++|..|+|+|++++.+ |+..+..|.+.|+||+|++
T Consensus        98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~  177 (354)
T 3nmw_A           98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  177 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence            4678899999999987665 5555656767 99999999999999999999999999986 7889999999999999999


Q ss_pred             hh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhchhccCCCCc
Q 015496          224 MV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVE  299 (405)
Q Consensus       224 LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~f~-~~gGi~~L~~lL~s~~~~--~kl~~kA~~lLs~L~~~~~~~~~~~~  299 (405)
                      +| ++++..++..|+.||.|+..+++..+..+. ..||+++|+.+|.+++..  ..++..|+++|+||+..-  ..+++.
T Consensus       178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~  255 (354)
T 3nmw_A          178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDH  255 (354)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCCHHH
Confidence            74 667788999999999999887777777887 789999999999876321  258999999999998410  024567


Q ss_pred             chhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496          300 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL  358 (405)
Q Consensus       300 ~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L  358 (405)
                      +..+.+.|+++.|+.+|.+++..+++.|+++|.+|+....++++.+. ..|..+.|..|
T Consensus       256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~-~~G~i~~Lv~L  313 (354)
T 3nmw_A          256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALW-DMGAVSMLKNL  313 (354)
T ss_dssp             HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH-HTTHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHH-HCCCHHHHHHH
Confidence            78899999999999999999999999999999999976677888888 44554444443

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.88  E-value=4.4e-22  Score=205.45  Aligned_cols=246  Identities=13%  Similarity=0.111  Sum_probs=201.4

Q ss_pred             HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcH
Q 015496          151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-----------HPDTDIRKISAWILGKASQNNPLVQKQVLEL-GAL  218 (405)
Q Consensus       151 ~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~-----------s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-G~l  218 (405)
                      ..|...|.++..+.+|...|.+.||+++|+.+|.           +.++.+|+.|+|+|.+++.+++..+..+... |+|
T Consensus       166 ~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI  245 (458)
T 3nmz_A          166 CPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM  245 (458)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence            3788888888888889999999999999999994           2457899999999999999998888877655 559


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015496          219 SKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK  297 (405)
Q Consensus       219 p~Ll~LL~s~~~~v~~kAl~ALS~lir~-~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~  297 (405)
                      |.|+++|++++++++..|+|||+++..+ ++..+..+.+.||+++|+.+|.+. .+..+++.|+.+|.||+.+     .+
T Consensus       246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s-~~~~v~~~A~~aL~nLs~~-----~~  319 (458)
T 3nmz_A          246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV-KKESTLKSVLSALWNLSAH-----CT  319 (458)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHHH-----CH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcC-CCHHHHHHHHHHHHHHccC-----CH
Confidence            9999999999999999999999999885 677889999999999999986543 2677899999999999862     22


Q ss_pred             CcchhHH-hCCcHHHHHHhccCCCh----HHHHHHHHHHHHHhc---CChhhHHHHHhcCCchHHHHHHHH---HHHH--
Q 015496          298 VEPPLFR-DRFFLKSVVDLTASADL----DLQEKALAAIKNLLQ---LRTTEALVLKDFCGLDTALERLRQ---QLQE--  364 (405)
Q Consensus       298 ~~~~~l~-~~g~l~~Lv~LL~~~D~----~v~E~al~aL~~L~~---~~~~~~~~v~~~~Gl~~~L~~L~~---~~~~--  364 (405)
                      +.+..+. ..|.++.|+.+|.+++.    ++++.|+++|.+|+.   ..++.++.+.+.+++++++..|+.   ..+.  
T Consensus       320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A  399 (458)
T 3nmz_A          320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA  399 (458)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHH
Confidence            3455666 78999999999998754    599999999999996   567788888855555555555541   1111  


Q ss_pred             ------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          365 ------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       365 ------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                            +.. +.+|++++.+.++++..++++.... .++++.+||.
T Consensus       400 ~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~-~~v~~~Aa~A  444 (458)
T 3nmz_A          400 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAA  444 (458)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSS-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHH
Confidence                  332 5789999999999999999987766 7899999985

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.87  E-value=4e-21  Score=179.05  Aligned_cols=196  Identities=17%  Similarity=0.222  Sum_probs=177.2

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496          132 LIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      .+...++.+.+++  .+.+..|+..|.+++. +.++...+.+.|++++|+.+|+++++.+|..|+|+|++++.+++..+.
T Consensus        55 ~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  132 (252)
T 4db8_A           55 ALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ  132 (252)
T ss_dssp             HHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence            4556677777653  7889999999999997 567888999999999999999999999999999999999998887768


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      .+++.|++|.|++++++++..++..|+++|++++.+++.....+.+.|+++.|+.+++++  +..++..|+++|.+|+. 
T Consensus       133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~-  209 (252)
T 4db8_A          133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-  209 (252)
T ss_dssp             HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTT-
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhc-
Confidence            899999999999999999999999999999999999989899999999999999999986  67899999999999995 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496          291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~  336 (405)
                          .+++....+.+.|+++.|+.++.++++++++.|+++|.+|+.
T Consensus       210 ----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          210 ----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             ----SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             ----CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence                355667788899999999999999999999999999999874

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.86  E-value=1.4e-20  Score=194.58  Aligned_cols=260  Identities=15%  Similarity=0.161  Sum_probs=214.9

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      +...++.|.+++ +++.+..|+..|..+... .++...++..|++++|+.+|.++++.+|..|+|+|++++.+++..+..
T Consensus       119 v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~  197 (528)
T 4b8j_A          119 VPRFVQFLTRED-FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDL  197 (528)
T ss_dssp             HHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence            455666666542 478889999999999875 577888999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          212 VLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       212 vle~G~lp~Ll~LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      +++.|+++.|+.++ .+++..++..|+|+|++++++.+... .....|+++.|+.+|.++  +..++..|+++|++|+..
T Consensus       198 i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~  274 (528)
T 4b8j_A          198 VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPS-FEQTRPALPALARLIHSN--DEEVLTDACWALSYLSDG  274 (528)
T ss_dssp             HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCC-HHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTSS
T ss_pred             HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHcC
Confidence            99999999999999 56678899999999999999864433 344589999999999876  678999999999999852


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHHH-----HH-
Q 015496          291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL-----QE-  364 (405)
Q Consensus       291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~-----~~-  364 (405)
                           .+.....+.+.|+++.|+.+|.+++..+++.|+++|++|+.+.....+.+. ..|+.+.|..+..+-     +. 
T Consensus       275 -----~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v~~~  348 (528)
T 4b8j_A          275 -----TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNLKKSIKKE  348 (528)
T ss_dssp             -----CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCCCHHHHHH
T ss_pred             -----CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCCcHHHHHH
Confidence                 344456778899999999999999999999999999999998777777777 566666655554322     11 


Q ss_pred             -------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          365 -------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       365 -------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                             +.. +.++.++..+.+.++...+++.+.. ..+++++||.
T Consensus       349 A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~a  394 (528)
T 4b8j_A          349 ACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE-FDIKKEAAWA  394 (528)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHH
Confidence                   222 4567777778888888999988876 6899999985

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.86  E-value=5.9e-20  Score=184.20  Aligned_cols=262  Identities=17%  Similarity=0.206  Sum_probs=209.8

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccC--CCCchhHHHhc-CCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHh
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVE--PIDNANDLSKL-GGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLV  208 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve--~iDnA~~~~~~-Ggi~~Lv~lL~s~-~~~Ir~~Aa~~Lg~~aqNN~~~  208 (405)
                      +...++.+.++  +++.+..|+..|..++.  .-.....+++. |+++.|+.+|+++ ++.+|..|+++|++++.++++.
T Consensus        22 l~~l~~~l~s~--~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~   99 (450)
T 2jdq_A           22 TSDMIEMIFSK--SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ   99 (450)
T ss_dssp             CHHHHHHHHSS--CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence            34455666544  57788999999998763  22234566777 9999999999987 8999999999999999999999


Q ss_pred             HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496          209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       209 Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~  288 (405)
                      +..+++.|++|.|+++++++++.++..|+++|++++.+++..++.+++.|+++.|+.+++++ .+..+++.|++++.+|+
T Consensus       100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L~~l~  178 (450)
T 2jdq_A          100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWALSNLC  178 (450)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999988999999999999999999964 36789999999999999


Q ss_pred             hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH---HH---
Q 015496          289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ---QL---  362 (405)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~---~~---  362 (405)
                      ..    .++.....+. .++++.|+.+|.++|..+++.++++|.+|+....+.++.+...++++..+..|..   ..   
T Consensus       179 ~~----~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  253 (450)
T 2jdq_A          179 RG----KSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP  253 (450)
T ss_dssp             CC----SSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHH
T ss_pred             CC----CCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHH
Confidence            64    1122222333 7899999999999999999999999999998766666666634444444444431   11   


Q ss_pred             -----HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          363 -----QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       363 -----~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                           ..+.. .+++++...+.+.++...+++.++. ..+++++||.
T Consensus       254 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~vr~~a~~~  299 (450)
T 2jdq_A          254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPK-ESIKKEACWT  299 (450)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHH
T ss_pred             HHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCC-HHHHHHHHHH
Confidence                 11333 4567777778889999999998887 7899999985

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.86  E-value=8.9e-21  Score=195.68  Aligned_cols=210  Identities=16%  Similarity=0.160  Sum_probs=173.7

Q ss_pred             HHHHHHHHHHHHHccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHH
Q 015496          147 LEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMK  223 (405)
Q Consensus       147 ~e~k~~AL~~L~~Lve~iD-nA~~~~~~Gg-i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~  223 (405)
                      .+-+..|...|.+++.+-+ +...+...|| +|+|+.+|.++++++|..|+|+|++++.+ ++..+..|.+.|++|+|++
T Consensus       214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~  293 (458)
T 3nmz_A          214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  293 (458)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence            4567889999999987665 4445556666 99999999999999999999999999986 7889999999999999999


Q ss_pred             hh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhchhccCCCCc
Q 015496          224 MV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVE  299 (405)
Q Consensus       224 LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~f~-~~gGi~~L~~lL~s~~~~--~kl~~kA~~lLs~L~~~~~~~~~~~~  299 (405)
                      +| ++++..++..|+.||.|+..+++..+..+. ..||+++|+.+|.+++..  ..++.+|+|+|+||+...  ..+++.
T Consensus       294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~  371 (458)
T 3nmz_A          294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDH  371 (458)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCCHHH
Confidence            75 556788899999999999887777777887 799999999999876322  258999999999998410  024567


Q ss_pred             chhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496          300 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL  358 (405)
Q Consensus       300 ~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L  358 (405)
                      +..+.+.|+++.|+.+|.+++.++++.|+++|.+|+....++++.+.+.+++++++..|
T Consensus       372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL  430 (458)
T 3nmz_A          372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI  430 (458)
T ss_dssp             HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT
T ss_pred             HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence            88899999999999999999999999999999999976677888888555555544444

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.86  E-value=5.8e-20  Score=184.25  Aligned_cols=261  Identities=14%  Similarity=0.167  Sum_probs=211.6

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496          132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      .+...++.+.+. .+.+.+..|+..|..++.. .++...+++.|+++.|+.+|+++++.+|..|+|+|++++.+++..+.
T Consensus        65 ~i~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~  143 (450)
T 2jdq_A           65 VVARFVEFLKRK-ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD  143 (450)
T ss_dssp             HHHHHHHHHTCT-TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHCCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            455556666654 2578888999999998864 46677788899999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496          211 QVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~  288 (405)
                      .+++.|++|.|+.++.+ ++..++..|+|+|++++++. +.....++ .++++.|+.++.++  +..++..++|++.+|+
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~  220 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALSYLS  220 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHHHHH
Confidence            99999999999999996 57899999999999999876 43333333 78999999999876  6789999999999998


Q ss_pred             hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH----HHHH
Q 015496          289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ----QLQE  364 (405)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~----~~~~  364 (405)
                      ..     .++....+.+.|+++.|+.+|.+++..+++.++++|.+|+...+...+.+. ..|+.+.|..+..    ..+.
T Consensus       221 ~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~vr~  294 (450)
T 2jdq_A          221 DG-----PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVIL-NCSALQSLLHLLSSPKESIKK  294 (450)
T ss_dssp             SS-----SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHTTCSSHHHHH
T ss_pred             CC-----CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHH-HCccHHHHHHHHcCCCHHHHH
Confidence            53     334556677889999999999999999999999999999988776666666 4566565555542    1111


Q ss_pred             --------hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          365 --------VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       365 --------l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                              +.. +.++.+...+.+.++...+++.++. ..+++++||.
T Consensus       295 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~-~~v~~~a~~~  341 (450)
T 2jdq_A          295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTAE-FRTRKEAAWA  341 (450)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHH
Confidence                    222 4556677777788888899988877 6899999995

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.85  E-value=2.9e-20  Score=191.00  Aligned_cols=175  Identities=15%  Similarity=0.194  Sum_probs=152.9

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  254 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f  254 (405)
                      .+|.|+.+|+++++++|..|+++|++++.+|+.++..+.+.|++|.|+++|+++++.++..|+|||.|++.++++....+
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             HhcCcHHHHHHhhc-CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc--------C-------
Q 015496          255 YVEAGDLMLQDILG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------S-------  318 (405)
Q Consensus       255 ~~~gGi~~L~~lL~-s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~--------~-------  318 (405)
                      +++||+++|+.+|+ ++  +..++..|+|+|.||+.      +++.+..+.+ |.++.|+.+|.        +       
T Consensus        83 ~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~------~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e  153 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSS------TDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE  153 (457)
T ss_dssp             HHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHT------SSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred             HHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhc------CHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence            99999999999998 54  67899999999999995      3567777888 99999999993        2       


Q ss_pred             -CChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHH-HHH
Q 015496          319 -ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALE-RLR  359 (405)
Q Consensus       319 -~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~-~L~  359 (405)
                       .+.+++..|+++|.+|+.. ++.++.+.+..|+.+.|. .|+
T Consensus       154 ~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~  195 (457)
T 1xm9_A          154 VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQ  195 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHH
Confidence             2566777999999999987 678888884415544444 444

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.85  E-value=6.8e-20  Score=190.03  Aligned_cols=261  Identities=15%  Similarity=0.181  Sum_probs=213.9

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      +...++.|.++ .+.+.+..|+..|..++... ++...++..|++++|+.+|.++++.+|..|+|+|++++.+++..+..
T Consensus       132 i~~Lv~~L~~~-~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~  210 (530)
T 1wa5_B          132 VPRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDY  210 (530)
T ss_dssp             HHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHH
Confidence            44455555543 25678889999999998754 56778888999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496          212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ  291 (405)
Q Consensus       212 vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~  291 (405)
                      +++.|++|.|+.++.+++..++..|+|+|++++++..+....+...|+++.|+.+|.++  +..++..|+++|.+|+.. 
T Consensus       211 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~-  287 (530)
T 1wa5_B          211 VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDG-  287 (530)
T ss_dssp             HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSS-
T ss_pred             HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC-
Confidence            99999999999999998889999999999999998644445666789999999999876  678999999999999952 


Q ss_pred             hccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----HHH---
Q 015496          292 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----LQE---  364 (405)
Q Consensus       292 ~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~~~---  364 (405)
                          .++....+.+.|+++.|+.+|.+++..+++.++++|.+|+.+.+...+.+. ..|+.+.|..+...    .+.   
T Consensus       288 ----~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~vr~~A~  362 (530)
T 1wa5_B          288 ----PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKENIKKEAC  362 (530)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHH
T ss_pred             ----CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCCCHHHHHHHH
Confidence                344566778889999999999999999999999999999988777777776 45665555555421    111   


Q ss_pred             -----hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          365 -----VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       365 -----l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                           +.. +.++.++..+.+.++...+++.++. ..+++++||.
T Consensus       363 ~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~a  406 (530)
T 1wa5_B          363 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKEACWA  406 (530)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHH
Confidence                 222 4557777777788888888888776 6899999985

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.84  E-value=3.1e-20  Score=202.74  Aligned_cols=261  Identities=11%  Similarity=0.009  Sum_probs=204.8

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC------------------------------c---hhHHHhcCCHH
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------------------------------N---ANDLSKLGGLS  177 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD------------------------------n---A~~~~~~Ggi~  177 (405)
                      ..+...++.+.+.  +..-...|+..|.+++...|                              +   ...+++.|++|
T Consensus       421 g~Ip~LV~LL~s~--d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp  498 (810)
T 3now_A          421 ASIHALMDLARGG--NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT  498 (810)
T ss_dssp             HHHHHHHHHHHTT--CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             chHHHHHHHhCCC--ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence            3455566666653  33456677777777776432                              1   15678899999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH---
Q 015496          178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF---  254 (405)
Q Consensus       178 ~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f---  254 (405)
                      +|+.+|+++++.+|+.|+|+|+|++. +++++..+++.|++|+|+.+|.++++..+..|.|||++++.+..+. ..|   
T Consensus       499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~-~~~~~~  576 (810)
T 3now_A          499 ALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE-VSFSGQ  576 (810)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH-HHTTTH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh-hhhcch
Confidence            99999999999999999999999996 5789999999999999999999999999999999999999864332 222   


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496          255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL  334 (405)
Q Consensus       255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L  334 (405)
                      ...|++++|+.+|.++ .+...+..|+++|+||+..     +++.+..+++.|+++.|+.+|.+++..+++.|+++|++|
T Consensus       577 ~~~~aIppLv~LL~~~-~~~l~~~eAl~AL~NLa~~-----~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NL  650 (810)
T 3now_A          577 RSLDVIRPLLNLLQQD-CTALENFESLMALTNLASM-----NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL  650 (810)
T ss_dssp             HHHHTHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTS-----CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHH
T ss_pred             hhhcHHHHHHHHhCCC-CcHHHHHHHHHHHHHHhcC-----CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            1257999999999865 2444566899999999953     456777889999999999999999999999999999999


Q ss_pred             hcCChhhHHHHHhcCCchHHHHHHHHH----HHH--------hhh-chhhhhhHHH-HHHHHHHHHHHHhhhccccccch
Q 015496          335 LQLRTTEALVLKDFCGLDTALERLRQQ----LQE--------VML-EEDQRDYAMD-VEALRREVELIFFRKLGKVGTRL  400 (405)
Q Consensus       335 ~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~~~--------l~~-~~~q~~~~~d-~~~l~~e~~~~~~~kl~~i~~~~  400 (405)
                      +.+++ .+..+....|..+.|..|...    .+.        +.. ++.|.+++.+ .+.++..++++.++- .++++++
T Consensus       651 a~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d-~~vq~~A  728 (810)
T 3now_A          651 VMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPS-PAVQHRG  728 (810)
T ss_dssp             TTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSS-HHHHHHH
T ss_pred             hCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCC-HHHHHHH
Confidence            98754 555555346776666666521    221        222 4668888888 789999999998877 7999999


Q ss_pred             hcc
Q 015496          401 CWN  403 (405)
Q Consensus       401 ~~~  403 (405)
                      ||.
T Consensus       729 ~~a  731 (810)
T 3now_A          729 IVI  731 (810)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            995

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.83  E-value=1.5e-19  Score=170.90  Aligned_cols=178  Identities=14%  Similarity=0.147  Sum_probs=152.9

Q ss_pred             CHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHH
Q 015496          175 GLSVLVGQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE  252 (405)
Q Consensus       175 gi~~Lv~lL~s~~~--~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~  252 (405)
                      .+|++|++|+++++  .+|..|+++|.+++.+|+..+..|.+.|+||+|+++|+++++.++..|+|||.|+..+++.+..
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999999887  9999999999999999999999999999999999999999999999999999999998899999


Q ss_pred             HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc---------------
Q 015496          253 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------------  317 (405)
Q Consensus       253 ~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~---------------  317 (405)
                      .+.++||+++|+++|++. .+..+++.|+.+|.+|+.      .++.+..+.+. .++.|++++.               
T Consensus        89 ~I~~~GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~------~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~  160 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQT-RDLETKKQITGLLWNLSS------NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN  160 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHT------SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred             HHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHc------ChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence            999999999999999843 256789999999999984      34556667664 5889988763               


Q ss_pred             -CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCc-hHHHHHHHH
Q 015496          318 -SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQ  360 (405)
Q Consensus       318 -~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl-~~~L~~L~~  360 (405)
                       ..|.++++.|..+|.+|+..+++.|+.+++..|+ ++++..|+.
T Consensus       161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~  205 (233)
T 3tt9_A          161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRG  205 (233)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHh
Confidence             1377999999999999998777889999866676 444444443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.83  E-value=5.4e-19  Score=181.12  Aligned_cols=264  Identities=15%  Similarity=0.150  Sum_probs=201.8

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      .+...++.|.+. .+.+.+..|+..|..+..+.++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus        60 ~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~  138 (529)
T 1jdh_A           60 MVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  138 (529)
T ss_dssp             HHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHH
Confidence            445556666654 3678888999999999888889999999999999999999999999999999999999998889999


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496          212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ  291 (405)
Q Consensus       212 vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~  291 (405)
                      +.+.|++|.|++++.+++..++..++.+|++++.+++..+..+.+.||++.|+.+|+++. +...+..++.++.+|+.+ 
T Consensus       139 i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~-  216 (529)
T 1jdh_A          139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC-  216 (529)
T ss_dssp             HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTS-
T ss_pred             HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcC-
Confidence            999999999999999988899999999999999999999999999999999999887542 233333344444444321 


Q ss_pred             hccCCCCcchhHHh---------------------------------------CCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496          292 LENMHKVEPPLFRD---------------------------------------RFFLKSVVDLTASADLDLQEKALAAIK  332 (405)
Q Consensus       292 ~~~~~~~~~~~l~~---------------------------------------~g~l~~Lv~LL~~~D~~v~E~al~aL~  332 (405)
                           ++.+..+.+                                       .++++.|+.+|.++|.++++.++++|.
T Consensus       217 -----~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  291 (529)
T 1jdh_A          217 -----SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS  291 (529)
T ss_dssp             -----TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             -----cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                 112222222                                       256777788888889999999999999


Q ss_pred             HHhcCChhhHHHHHhcCCchHHHHHHHHH-----HHH--------hhhc----hhhhhhHHHHHHHHHHHHHHHhhhccc
Q 015496          333 NLLQLRTTEALVLKDFCGLDTALERLRQQ-----LQE--------VMLE----EDQRDYAMDVEALRREVELIFFRKLGK  395 (405)
Q Consensus       333 ~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~-----~~~--------l~~~----~~q~~~~~d~~~l~~e~~~~~~~kl~~  395 (405)
                      +|+..+.+.++.+.+.+|++..+..|...     .+.        +...    +.-+..+.+.+.++....++.+++-..
T Consensus       292 ~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~  371 (529)
T 1jdh_A          292 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP  371 (529)
T ss_dssp             HHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchH
Confidence            99987766778887566666655555431     111        1111    112345667788888899998887238


Q ss_pred             cccchhcc
Q 015496          396 VGTRLCWN  403 (405)
Q Consensus       396 i~~~~~~~  403 (405)
                      +++++||+
T Consensus       372 v~~~a~~~  379 (529)
T 1jdh_A          372 LIKATVGL  379 (529)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999996

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.83  E-value=2.4e-19  Score=175.07  Aligned_cols=205  Identities=14%  Similarity=0.012  Sum_probs=162.4

Q ss_pred             HHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHh
Q 015496          188 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI  266 (405)
Q Consensus       188 ~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~-LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~l  266 (405)
                      .+-|..|+..|..++.+ .+....+.+.|++|+|+. +|+++++.++..|+|+|++++.+++..++.+++.||+++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            46789999999999985 567888999999999999 9999999999999999999999999999999999999999999


Q ss_pred             hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          267 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK  346 (405)
Q Consensus       267 L~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~  346 (405)
                      |+++ .+..++++|+|+|++|+++     ++.....|.+.|+++.|+.+|.++|..++..|+++|.+|+.++.+.++.+.
T Consensus       133 L~~~-~~~~v~~~A~~ALsnl~~~-----~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv  206 (296)
T 1xqr_A          133 LDRD-ACDTVRVKALFAISCLVRE-----QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC  206 (296)
T ss_dssp             HHHC-SCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HccC-CCHHHHHHHHHHHHHHHcC-----CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            9864 2577999999999999963     344556788899999999999999999999999999999988777888888


Q ss_pred             hcCCchHHHHHHHHH----H-----HHhhh-chhhhhhHHHHHHHH-HHHHHHHhhhccccc-cchh
Q 015496          347 DFCGLDTALERLRQQ----L-----QEVML-EEDQRDYAMDVEALR-REVELIFFRKLGKVG-TRLC  401 (405)
Q Consensus       347 ~~~Gl~~~L~~L~~~----~-----~~l~~-~~~q~~~~~d~~~l~-~e~~~~~~~kl~~i~-~~~~  401 (405)
                       ..|+.+.|..|...    +     +.+-. -..+++...++...+ ...+++.+.+ ++++ ||+|
T Consensus       207 -~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~-~~lq~~e~~  271 (296)
T 1xqr_A          207 -SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRC-QLLQQHEEY  271 (296)
T ss_dssp             -HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHH-HHHTTCGGG
T ss_pred             -HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHH-HHccchHHH
Confidence             55665555555421    1     11211 112444444555442 3455565555 7777 7765

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.82  E-value=1.1e-19  Score=192.16  Aligned_cols=266  Identities=15%  Similarity=0.108  Sum_probs=197.0

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQK  210 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~  210 (405)
                      +...++.|.+.  +++.+..|...|..++. +.++...+.+.||||+||.+|+++++++|+.|+|+|++++.+ |++++.
T Consensus        50 i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~  127 (584)
T 3l6x_A           50 LPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI  127 (584)
T ss_dssp             HHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred             HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence            45556777654  57888889999999884 678889999999999999999999999999999999999996 799999


Q ss_pred             HHHHcCcHHHHHHhhcC-CCHHHHH-------------------------------------------------------
Q 015496          211 QVLELGALSKLMKMVKS-SFVEEAV-------------------------------------------------------  234 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s-~~~~v~~-------------------------------------------------------  234 (405)
                      .|+++|+||+|+++|++ .+.+++.                                                       
T Consensus       128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~  207 (584)
T 3l6x_A          128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES  207 (584)
T ss_dssp             HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred             HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence            99999999999999986 3444333                                                       


Q ss_pred             ---HHHHHHHHHhcCChhhHHHHHhcCc-HHHHHHhhcC----CCccHHHHHHHHHHHHHHhhchh-ccC----------
Q 015496          235 ---KALYTVSSLIRNNLAGQEMFYVEAG-DLMLQDILGN----SSFEIRLHRKAVSLVGDLAKCQL-ENM----------  295 (405)
Q Consensus       235 ---kAl~ALS~lir~~~~~~~~f~~~gG-i~~L~~lL~s----~~~~~kl~~kA~~lLs~L~~~~~-~~~----------  295 (405)
                         .|.++|.|++.+++..++.+++++| ++.|+.++++    ...+.+.+..|+++|.||+.... +.+          
T Consensus       208 V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~  287 (584)
T 3l6x_A          208 VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAP  287 (584)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcc
Confidence               3455555565555566677777655 4577777653    11244567777888877765310 000          


Q ss_pred             ----------------------------------CC----------------------CcchhHHhCCcHHHHHHhccCC
Q 015496          296 ----------------------------------HK----------------------VEPPLFRDRFFLKSVVDLTASA  319 (405)
Q Consensus       296 ----------------------------------~~----------------------~~~~~l~~~g~l~~Lv~LL~~~  319 (405)
                                                        ++                      ..+..+.+.+.++.|++||.++
T Consensus       288 ~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~  367 (584)
T 3l6x_A          288 NVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE  367 (584)
T ss_dssp             --------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS
T ss_pred             cccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC
Confidence                                              00                      0111334468899999999999


Q ss_pred             ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH-------------------HHHhhh-chhhhhhHHHHH
Q 015496          320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ-------------------LQEVML-EEDQRDYAMDVE  379 (405)
Q Consensus       320 D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~-------------------~~~l~~-~~~q~~~~~d~~  379 (405)
                      +..+++.|+++|.+|+.+.. .+..+. .+|+++++..|...                   +..+++ +.+|++.+.+.+
T Consensus       368 ~~~v~~~A~~aL~nLs~~~~-~~~~I~-~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g  445 (584)
T 3l6x_A          368 HERVVKAASGALRNLAVDAR-NKELIG-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQ  445 (584)
T ss_dssp             CHHHHHHHHHHHHHHHTTCS-CHHHHH-HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHhCChh-HHHHHH-hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Confidence            99999999999999998865 445554 66665555544421                   112444 688999999999


Q ss_pred             HHHHHHHHHHhh--hccccccchhcc
Q 015496          380 ALRREVELIFFR--KLGKVGTRLCWN  403 (405)
Q Consensus       380 ~l~~e~~~~~~~--kl~~i~~~~~~~  403 (405)
                      .++..++++.+.  + +++.|.|||.
T Consensus       446 ~I~~Lv~LL~s~~~~-~~v~k~Aa~v  470 (584)
T 3l6x_A          446 GIEKLVLINKSGNRS-EKEVRAAALV  470 (584)
T ss_dssp             HHHHHHHHHTCSSSC-HHHHHHHHHH
T ss_pred             ChHHHHHHHhCCCCC-hHHHHHHHHH
Confidence            999999999875  5 7899999984

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.82  E-value=1.4e-18  Score=184.99  Aligned_cols=265  Identities=15%  Similarity=0.125  Sum_probs=209.2

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      ..+...++.|.+. .+.+.+..|+..|..+..+.++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus        56 ~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~  134 (644)
T 2z6h_A           56 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  134 (644)
T ss_dssp             HHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred             ChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence            3455666777654 367888899999999988888899999999999999999999999999999999999999888999


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      .+.+.|++|.|+++|++++..++..++.+|++++.+++..+..+.+.||++.|+.+|++. ....++..++.++.+|+. 
T Consensus       135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~-  212 (644)
T 2z6h_A          135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSV-  212 (644)
T ss_dssp             HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC-ChHHHHHHHHHHHHHHhc-
Confidence            999999999999999998888888889999999988899999999999999999999976 356778889999999874 


Q ss_pred             hhccCCCCcchhHHhCCcHHH---------------------------------------HHHhccCCChHHHHHHHHHH
Q 015496          291 QLENMHKVEPPLFRDRFFLKS---------------------------------------VVDLTASADLDLQEKALAAI  331 (405)
Q Consensus       291 ~~~~~~~~~~~~l~~~g~l~~---------------------------------------Lv~LL~~~D~~v~E~al~aL  331 (405)
                           .++.+..+.+.|+++.                                       |+.+|.++|.++++.++++|
T Consensus       213 -----~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL  287 (644)
T 2z6h_A          213 -----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL  287 (644)
T ss_dssp             -----CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             -----CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence                 3344555555555544                                       45556667888899999999


Q ss_pred             HHHhcCChhhHHHHHhcCCchHHHHHHHHH-----HHH--------hhh---chhhhhh-HHHHHHHHHHHHHHHhhhcc
Q 015496          332 KNLLQLRTTEALVLKDFCGLDTALERLRQQ-----LQE--------VML---EEDQRDY-AMDVEALRREVELIFFRKLG  394 (405)
Q Consensus       332 ~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~-----~~~--------l~~---~~~q~~~-~~d~~~l~~e~~~~~~~kl~  394 (405)
                      .+|+..+...++.+.+.+|+...+..|...     .+.        +..   ++.+.+. +.+.+.++...+++.+++-.
T Consensus       288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~  367 (644)
T 2z6h_A          288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW  367 (644)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCH
T ss_pred             HHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCch
Confidence            999887666777777455555555555431     111        111   1123333 55678899999999888634


Q ss_pred             ccccchhcc
Q 015496          395 KVGTRLCWN  403 (405)
Q Consensus       395 ~i~~~~~~~  403 (405)
                      .+++++||+
T Consensus       368 ~v~~~a~~~  376 (644)
T 2z6h_A          368 PLIKATVGL  376 (644)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            899999996

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.80  E-value=5.9e-19  Score=166.84  Aligned_cols=197  Identities=13%  Similarity=0.141  Sum_probs=161.5

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lv-e~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      +..+++.|.+++...+.+..|...|..++ .+.++...+...||+|+||++|+++++++|+.|+|+|.+++.+|++++..
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            34456677766544566777888888887 45678889999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhc---C-----------CCccHHH
Q 015496          212 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG---N-----------SSFEIRL  276 (405)
Q Consensus       212 vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~---s-----------~~~~~kl  276 (405)
                      |.+.|+||+|+++|+ +++.++++.|..+|-++.. ++.....+.+ +|+++|+.++.   +           ...+..+
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence            999999999999998 5678888888877777754 4556666665 58999998763   0           1136789


Q ss_pred             HHHHHHHHHHHhhchhccCCCCcchhHHhC-CcHHHHHHhccC------CChHHHHHHHHHHHHHhc
Q 015496          277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       277 ~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~-g~l~~Lv~LL~~------~D~~v~E~al~aL~~L~~  336 (405)
                      +.+|+.+|.||+.     .+++.+..+++. |+++.|+.+++.      .|...+|.++.+|.+|+-
T Consensus       168 ~~na~~~L~nLss-----~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          168 FYNVTGCLRNMSS-----AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHHTT-----SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhc-----CCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            9999999999985     355788889876 889999999875      266899999999999974

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.79  E-value=5.5e-18  Score=179.33  Aligned_cols=179  Identities=15%  Similarity=0.116  Sum_probs=156.1

Q ss_pred             hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-Chhh
Q 015496          172 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAG  250 (405)
Q Consensus       172 ~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~-~~~~  250 (405)
                      ..+++++||.+|.++++++|+.|+++|.+++.+++..+..|.+.|+||+|+++|++++..++..|+|||.||+.+ ++.+
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n  125 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN  125 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence            457899999999999999999999999999999999999999999999999999999999999999999999986 6899


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc-------------
Q 015496          251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA-------------  317 (405)
Q Consensus       251 ~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~-------------  317 (405)
                      +..++++||+++|+.+|++. .+..+++.|+++|.+|+.      +++.+..+.+ +.++.|+++|.             
T Consensus       126 k~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~------~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~  197 (584)
T 3l6x_A          126 KIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSS------HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED  197 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTT------SGGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred             HHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC------CchhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence            99999999999999999974 256789999999999984      3456667775 56999999871             


Q ss_pred             -----CCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHH
Q 015496          318 -----SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL  358 (405)
Q Consensus       318 -----~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L  358 (405)
                           ..|.++++.|..+|.+|+..+++.++.+++..|+.+.|..+
T Consensus       198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~  243 (584)
T 3l6x_A          198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFI  243 (584)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHH
Confidence                 23689999999999999998777788888677775444443

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.78  E-value=1.3e-17  Score=182.25  Aligned_cols=264  Identities=15%  Similarity=0.152  Sum_probs=202.8

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      .+...++.|.+. .+.+.+..|+..|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+..
T Consensus       193 ~i~~Lv~~L~~~-~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~  271 (780)
T 2z6g_A          193 MVSAIVRTMQNT-NDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA  271 (780)
T ss_dssp             HHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred             hHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence            344445555544 3678899999999998888888889999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015496          212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ  291 (405)
Q Consensus       212 vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~  291 (405)
                      +.+.|++|.|++++.+++..++..++.+|.+++.+++..+..+.+.||++.|+.+++++. +...+..++.++.+|+.. 
T Consensus       272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~-  349 (780)
T 2z6g_A          272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC-  349 (780)
T ss_dssp             HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS-
T ss_pred             HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcC-
Confidence            999999999999999988889999999999999888999999999999999999998763 334444555555555531 


Q ss_pred             hccCCCCcchhHHh---------------------------------------CCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496          292 LENMHKVEPPLFRD---------------------------------------RFFLKSVVDLTASADLDLQEKALAAIK  332 (405)
Q Consensus       292 ~~~~~~~~~~~l~~---------------------------------------~g~l~~Lv~LL~~~D~~v~E~al~aL~  332 (405)
                           +..+..+.+                                       .++++.|+.+|.+.|.++++.|+++|.
T Consensus       350 -----~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~  424 (780)
T 2z6g_A          350 -----SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILS  424 (780)
T ss_dssp             -----TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                 111222222                                       356777788888889999999999999


Q ss_pred             HHhcCChhhHHHHHhcCCchHHHHHHHH-----HHHH--------hhhchhh----hhhHHHHHHHHHHHHHHHhhhccc
Q 015496          333 NLLQLRTTEALVLKDFCGLDTALERLRQ-----QLQE--------VMLEEDQ----RDYAMDVEALRREVELIFFRKLGK  395 (405)
Q Consensus       333 ~L~~~~~~~~~~v~~~~Gl~~~L~~L~~-----~~~~--------l~~~~~q----~~~~~d~~~l~~e~~~~~~~kl~~  395 (405)
                      +|+..+...++.+.+.+|+...+..|..     ..+.        +.....+    +..+.+.+.++....++.+++-..
T Consensus       425 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~  504 (780)
T 2z6g_A          425 NLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWP  504 (780)
T ss_dssp             HHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHH
Confidence            9998877777778755666666666653     1111        1111111    234556677888888888887238


Q ss_pred             cccchhcc
Q 015496          396 VGTRLCWN  403 (405)
Q Consensus       396 i~~~~~~~  403 (405)
                      +++++||+
T Consensus       505 v~~~A~~a  512 (780)
T 2z6g_A          505 LIKATVGL  512 (780)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999995

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.74  E-value=9.2e-17  Score=164.49  Aligned_cols=216  Identities=18%  Similarity=0.156  Sum_probs=173.6

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHH
Q 015496          134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL  213 (405)
Q Consensus       134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vl  213 (405)
                      ...+..+.+.+ ....+..+...|..+....++...+.+.|++++|+.++.++++.++..|+|+|++++.+.+...   .
T Consensus       188 ~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~  263 (529)
T 1jdh_A          188 QALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---G  263 (529)
T ss_dssp             HHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---C
T ss_pred             HHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---H
Confidence            34445555543 3445556777788888788888999999999999999999999999999999999998765422   1


Q ss_pred             HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015496          214 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE  293 (405)
Q Consensus       214 e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~  293 (405)
                      ..|++|.|++++.++++.++..|+++|++++.+++..+..+.+.||++.|+.+|.+++.+..++..|+++|.+|+..   
T Consensus       264 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~---  340 (529)
T 1jdh_A          264 MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR---  340 (529)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS---
T ss_pred             HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC---
Confidence            24889999999999999999999999999999988899999999999999999976323467999999999999853   


Q ss_pred             cCCCC---cchhHHhCCcHHHHHHhccCCC-hHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496          294 NMHKV---EPPLFRDRFFLKSVVDLTASAD-LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR  359 (405)
Q Consensus       294 ~~~~~---~~~~l~~~g~l~~Lv~LL~~~D-~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~  359 (405)
                        +++   .+..+.+.|.++.|+.+|.+++ ..+++.++++|.+++.++. .++.+.+.+++++.+..|+
T Consensus       341 --~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~  407 (529)
T 1jdh_A          341 --HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLV  407 (529)
T ss_dssp             --STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHH
T ss_pred             --CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHH
Confidence              222   3567888999999999999886 5999999999999998654 4566663444444444444

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.73  E-value=1.9e-16  Score=168.47  Aligned_cols=259  Identities=18%  Similarity=0.170  Sum_probs=189.0

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH--------------------------------
Q 015496          134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG--------------------------------  181 (405)
Q Consensus       134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~--------------------------------  181 (405)
                      ...+..+.+.. ..+.+..++..|..+....++...+++.|++++|+.                                
T Consensus       185 ~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~  263 (644)
T 2z6h_A          185 QALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG  263 (644)
T ss_dssp             HHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHH
T ss_pred             HHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhh
Confidence            34445555442 334455566666666666667777777776666655                                


Q ss_pred             -------hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCh---h
Q 015496          182 -------QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNL---A  249 (405)
Q Consensus       182 -------lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~---~  249 (405)
                             +|+++++++|..|+|+|++++.+++..++.+++.|+++.|+.++.+.  .+.++..|+++|++++.+++   .
T Consensus       264 ~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~  343 (644)
T 2z6h_A          264 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM  343 (644)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHH
Confidence                   45557788999999999999999999999999999999999999863  37899999999999998655   3


Q ss_pred             hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC----------
Q 015496          250 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA----------  319 (405)
Q Consensus       250 ~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~----------  319 (405)
                      .+..++..||++.|+.+|+++ .+..+++.|+|+|+||+.+      +..+..+.+.|+++.|+++|.+.          
T Consensus       344 ~q~~v~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nLa~~------~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~  416 (644)
T 2z6h_A          344 AQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALC------PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM  416 (644)
T ss_dssp             HHHHHHHTTHHHHHHHTTSTT-CCHHHHHHHHHHHHHHTTS------GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHccChHHHHHHhCcc-CchHHHHHHHHHHHHHccC------HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhh
Confidence            466688999999999999986 3467899999999999853      34557888999999999998763          


Q ss_pred             ------------ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH---HHH--------hhhchhhhhhHH
Q 015496          320 ------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ---LQE--------VMLEEDQRDYAM  376 (405)
Q Consensus       320 ------------D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~---~~~--------l~~~~~q~~~~~  376 (405)
                                  +.++++.++.+|.+|+... ..+..+.+.+++++.+..|...   .+.        +..+.+.+....
T Consensus       417 al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~  495 (644)
T 2z6h_A          417 GGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIE  495 (644)
T ss_dssp             -------CCSSCHHHHHHHHHHHHHHHTTSH-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             ccccchhcccccHHHHHHHHHHHHHHHhcCH-HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence                        3567888999999999764 5677777456665555555421   111        222333455555


Q ss_pred             HHHHHHHHHHHHHhhhccccccchhc
Q 015496          377 DVEALRREVELIFFRKLGKVGTRLCW  402 (405)
Q Consensus       377 d~~~l~~e~~~~~~~kl~~i~~~~~~  402 (405)
                      +.+.++...+++.++- ..|++-++|
T Consensus       496 ~~g~l~~L~~ll~~~~-~~vr~~A~~  520 (644)
T 2z6h_A          496 AEGATAPLTELLHSRN-EGVATYAAA  520 (644)
T ss_dssp             HTTCHHHHHHHTTCSC-HHHHHHHHH
T ss_pred             HcCChhHHHHHHcCCC-HHHHHHHHH
Confidence            6666777777766665 567666665

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.67  E-value=1.1e-15  Score=166.95  Aligned_cols=221  Identities=19%  Similarity=0.215  Sum_probs=168.1

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChh--
Q 015496          174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLA--  249 (405)
Q Consensus       174 Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~~--  249 (405)
                      |+++.|+.+|+++++.+|..|+|+|++++.+++..++.+++.|+++.|+++|.+.  .+.++..|+++|++|+.+++.  
T Consensus       399 ~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~  478 (780)
T 2z6g_A          399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE  478 (780)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHH
Confidence            4566666777778899999999999999999999999999999999999999763  358999999999999887655  


Q ss_pred             -hHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC--------
Q 015496          250 -GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD--------  320 (405)
Q Consensus       250 -~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D--------  320 (405)
                       .+..+...||++.|+.+|.++ .+..++..|+|+|+||+.+      +.....+.+.|+++.|+++|.+.+        
T Consensus       479 ~~~~~v~~~~~l~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~------~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa  551 (780)
T 2z6g_A          479 MAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALC------PANHAPLREQGAIPRLVQLLVRAHQDTQRRTS  551 (780)
T ss_dssp             HHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHHSS------HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHHHhcC------HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence             356888999999999999986 3457999999999999853      334567889999999999987543        


Q ss_pred             --------------hHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH---HHH--------HhhhchhhhhhH
Q 015496          321 --------------LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ---QLQ--------EVMLEEDQRDYA  375 (405)
Q Consensus       321 --------------~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~---~~~--------~l~~~~~q~~~~  375 (405)
                                    .++++.++.+|.+|+.. ...+..+.+.+++++++..|..   ..+        .+..+...+...
T Consensus       552 ~al~nq~~~~~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i  630 (780)
T 2z6g_A          552 MGGTQQQFVEGVRMEEIVEACTGALHILARD-IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI  630 (780)
T ss_dssp             ------CCSTTCCHHHHHHHHHHHHHHHTTS-HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred             hccccchhhcccChHHHHHHHHHHHHHHhcC-hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence                          45788899999999865 4566777756666555555542   111        122233344555


Q ss_pred             HHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          376 MDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       376 ~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                      .+.+.++....++.++- ..+++.++|.
T Consensus       631 ~~~g~i~~L~~Ll~~~~-~~Vr~~A~~a  657 (780)
T 2z6g_A          631 EAEGATAPLTELLHSRN-EGVATYAAAV  657 (780)
T ss_dssp             HHTTCHHHHHHGGGCSC-HHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHcCCC-HHHHHHHHHH
Confidence            56666777777777666 6777776663

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.47  E-value=4.2e-13  Score=144.96  Aligned_cols=217  Identities=14%  Similarity=0.185  Sum_probs=162.9

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHH---HHHHHHHHHHHHh-cCChH
Q 015496          132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD---IRKISAWILGKAS-QNNPL  207 (405)
Q Consensus       132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~---Ir~~Aa~~Lg~~a-qNN~~  207 (405)
                      .+.-.+..+.+.  ++..|..|...|..+..+.++...+++.||+++|+.+|.+....   .|..|+.+|+++. ..||.
T Consensus       458 vIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~  535 (778)
T 3opb_A          458 LISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG  535 (778)
T ss_dssp             HHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred             CHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence            344445555543  67889999999999999999999999999999999999876544   8999999999999 45665


Q ss_pred             hHHHHHH---cCcHHHHHHhhcC--CCH------------HHHHHHHHHHHHHhcCC----hhhHHHHHhc-CcHHHHHH
Q 015496          208 VQKQVLE---LGALSKLMKMVKS--SFV------------EEAVKALYTVSSLIRNN----LAGQEMFYVE-AGDLMLQD  265 (405)
Q Consensus       208 ~Q~~vle---~G~lp~Ll~LL~s--~~~------------~v~~kAl~ALS~lir~~----~~~~~~f~~~-gGi~~L~~  265 (405)
                      .-  |-.   .|++|+|+.||..  +..            -.+..|+.||.|++...    +..+..++.. |+++.|..
T Consensus       536 ~~--f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~  613 (778)
T 3opb_A          536 LI--FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN  613 (778)
T ss_dssp             HH--SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             HH--cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence            52  211   3999999999983  211            12668999999999875    2446777885 99999999


Q ss_pred             hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc-hhHHhC------CcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          266 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDR------FFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       266 lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~-~~l~~~------g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                      +|.++  +..+|+.|+++++||+.+      ++.+ ..+.+.      +-++.|+.++.++|.++|..|++||.+++...
T Consensus       614 LL~s~--n~~VrrAA~elI~NL~~~------~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~  685 (778)
T 3opb_A          614 LMLDE--NVPLQRSTLELISNMMSH------PLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI  685 (778)
T ss_dssp             GGGCS--SHHHHHHHHHHHHHHHTS------GGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhCC--CHHHHHHHHHHHHHHhCC------cHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence            99986  567999999999999953      3322 233221      23788999999999999999999999997543


Q ss_pred             hh-hHHHHHhcCCchHHHHHHHH
Q 015496          339 TT-EALVLKDFCGLDTALERLRQ  360 (405)
Q Consensus       339 ~~-~~~~v~~~~Gl~~~L~~L~~  360 (405)
                      +. ++..+....|+...+..|+.
T Consensus       686 ~~ia~~ll~~~~gi~~Ll~lL~~  708 (778)
T 3opb_A          686 PLIAKELLTKKELIENAIQVFAD  708 (778)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHccccHHHHHHHHhc
Confidence            43 44444433577777776665

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.46  E-value=8.7e-13  Score=142.55  Aligned_cols=167  Identities=12%  Similarity=0.148  Sum_probs=135.0

Q ss_pred             chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHH---HHHHHHHHHHH
Q 015496          166 NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE---EAVKALYTVSS  242 (405)
Q Consensus       166 nA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~---v~~kAl~ALS~  242 (405)
                      |...+.+.|++|+|+.+++++++.+|..|+|+|.+++. +++++..+++.|++++|+.+|.+.+..   .+..|+.||++
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALAr  527 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTR  527 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            34567789999999999999999999999999999985 599999999999999999999987654   79999999999


Q ss_pred             HhcCChhhHHHHHh---cCcHHHHHHhhcC-CCc-----------cHHHHHHHHHHHHHHhhchhccCC---CCcchhHH
Q 015496          243 LIRNNLAGQEMFYV---EAGDLMLQDILGN-SSF-----------EIRLHRKAVSLVGDLAKCQLENMH---KVEPPLFR  304 (405)
Q Consensus       243 lir~~~~~~~~f~~---~gGi~~L~~lL~s-~~~-----------~~kl~~kA~~lLs~L~~~~~~~~~---~~~~~~l~  304 (405)
                      +.-...+.. .|-.   .|++++|+.+|.. +..           +..-+..|+.+|+||+..    ++   ++.+..++
T Consensus       528 Llis~np~~-~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~----~~n~~E~~r~~Ii  602 (778)
T 3opb_A          528 MLIFTNPGL-IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS----ETSDGEEVCKHIV  602 (778)
T ss_dssp             HHHTSCHHH-HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC----CSHHHHHHHHHHH
T ss_pred             HHhcCCHHH-HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC----CcccchHHHHHHH
Confidence            885543322 3421   4999999999983 211           112366899999999963    21   23466677


Q ss_pred             hC-CcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          305 DR-FFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       305 ~~-g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                      +. |+++.|.++|.+++..+|..|+.+|++|+..+
T Consensus       603 ~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~  637 (778)
T 3opb_A          603 STKVYWSTIENLMLDENVPLQRSTLELISNMMSHP  637 (778)
T ss_dssp             HSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG
T ss_pred             HhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Confidence            75 99999999999999999999999999999864

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.40  E-value=8.2e-12  Score=132.13  Aligned_cols=241  Identities=18%  Similarity=0.166  Sum_probs=181.8

Q ss_pred             HhHHHHHHHHHHcC--CCCHH--HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC------------------chhH
Q 015496          112 KRQMEIKELMEKLK--TPSDA--QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------------------NAND  169 (405)
Q Consensus       112 ~r~~~L~~a~~~~~--~~~d~--~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD------------------nA~~  169 (405)
                      .||.-+..+ +++.  -+..+  .-|+..+.+|.+...+.|--..+|+.|..+....+                  ++..
T Consensus        38 DRR~Av~~L-k~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~  116 (651)
T 3grl_A           38 DRRNAVRAL-KSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI  116 (651)
T ss_dssp             HHHHHHHHH-HHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHH
Confidence            366665544 3332  23332  33788888888877677766677888877554332                  3344


Q ss_pred             HHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-hHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015496          170 LSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRN  246 (405)
Q Consensus       170 ~~~-~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~-~Q~~vle~-G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~  246 (405)
                      |.+ .++++.|+.+|++.+-.+|..|..+|..++.++|. .|+.|+.. +|++.|+.+|+++.+.+|-.++..|++++++
T Consensus       117 f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~  196 (651)
T 3grl_A          117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS  196 (651)
T ss_dssp             HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence            543 57899999999999999999999999999999999 99999976 9999999999999999999999999999999


Q ss_pred             ChhhHHHHHhcCcHHHHHHhhcCCCc--cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChH--
Q 015496          247 NLAGQEMFYVEAGDLMLQDILGNSSF--EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD--  322 (405)
Q Consensus       247 ~~~~~~~f~~~gGi~~L~~lL~s~~~--~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~--  322 (405)
                      ++..|+.+.-.||++.|..++.....  --.+...++.++.||++     .++.....|.+.|+++.|..+|..++..  
T Consensus       197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr-----~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~  271 (651)
T 3grl_A          197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK-----NNNSNQNFFKEGSYIQRMKPWFEVGDENSG  271 (651)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTCGGGGGGGGCCCSCSSC
T ss_pred             CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh-----cCHHHHHHHHHcCCHHHHHHHhCCCccccc
Confidence            99999998889999999999975421  23477889999999996     3667788999999999999999865321  


Q ss_pred             ----HHHH---HHHHHHHHhcCCh------hhHHHHHhcCCchHHHHHHH
Q 015496          323 ----LQEK---ALAAIKNLLQLRT------TEALVLKDFCGLDTALERLR  359 (405)
Q Consensus       323 ----v~E~---al~aL~~L~~~~~------~~~~~v~~~~Gl~~~L~~L~  359 (405)
                          ....   ++.++.-|+..+.      .+...+. .+|+...|.+|.
T Consensus       272 W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~-~~g~l~~Ll~ll  320 (651)
T 3grl_A          272 WSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMF-QCGLLQQLCTIL  320 (651)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHH-HTTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH-HCCCHHHHHHHH
Confidence                2223   6666777766532      2445565 555544444443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.20  E-value=6.9e-10  Score=117.52  Aligned_cols=220  Identities=16%  Similarity=0.167  Sum_probs=177.2

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcC
Q 015496          127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQN  204 (405)
Q Consensus       127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s--~~~~Ir~~Aa~~Lg~~aqN  204 (405)
                      ++..+.+....+-+.+. .-.|+|..|+..|..+..+.   ..-+..+|+++|+..|+.  .+.++-..+..+|.++...
T Consensus        17 qs~~etI~~L~~Rl~~~-tl~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~   92 (651)
T 3grl_A           17 HTEAETIQKLCDRVASS-TLLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN   92 (651)
T ss_dssp             -CHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CChhhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            35667888888888874 46799999999999996443   345557799999999964  6888888999999888776


Q ss_pred             ChH-----------------hHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhc-CcHHHHH
Q 015496          205 NPL-----------------VQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQ  264 (405)
Q Consensus       205 N~~-----------------~Q~~vl-e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~-~~~~f~~~-gGi~~L~  264 (405)
                      ++.                 ..+.++ +.+.++.|+.+|++++-.+|..++-.|+.++.+++. .++.++.. +|++.|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            654                 223444 458999999999998889999999999999999988 78888865 9999999


Q ss_pred             HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCCh----HHHHHHHHHHHHHhcCChh
Q 015496          265 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL----DLQEKALAAIKNLLQLRTT  340 (405)
Q Consensus       265 ~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~----~v~E~al~aL~~L~~~~~~  340 (405)
                      .+|+++  ...+|..++.+|.+|+.     .+++..+.+.-+|..+.|++++.....    -+.+.++..|.+|+..+..
T Consensus       173 ~lL~d~--rE~iRneallLL~~Lt~-----~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s  245 (651)
T 3grl_A          173 DLLADS--REVIRNDGVLLLQALTR-----SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS  245 (651)
T ss_dssp             GGGGCS--SHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhCc--hHHHHHHHHHHHHHHhc-----CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence            999986  45699999999999995     466777777778999999999987543    7889999999999999776


Q ss_pred             hHHHHHhcCCchHHHHHH
Q 015496          341 EALVLKDFCGLDTALERL  358 (405)
Q Consensus       341 ~~~~v~~~~Gl~~~L~~L  358 (405)
                      ....|+ +.|..+.|..|
T Consensus       246 NQ~~Fr-Et~~i~~L~~L  262 (651)
T 3grl_A          246 NQNFFK-EGSYIQRMKPW  262 (651)
T ss_dssp             HHHHHH-HTTCGGGGGGG
T ss_pred             HHHHHH-HcCCHHHHHHH
Confidence            778888 55555554444

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.07  E-value=6.3e-10  Score=119.79  Aligned_cols=170  Identities=12%  Similarity=0.091  Sum_probs=137.1

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcC-ChhhHH
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRN-NLAGQE  252 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll-~LL~s~~~~v~~kAl~ALS~lir~-~~~~~~  252 (405)
                      .+.|+++.|+|++++.|..||++|+++++ ++..++.++..|++++++ .+|.+++.++|..|.+||.|++.+ .+....
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            56788899999999999999999999997 688999999999998876 568888899999999999999876 467788


Q ss_pred             HHHhcCcHHHHHHhhcCCC------------cc-------HHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015496          253 MFYVEAGDLMLQDILGNSS------------FE-------IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV  313 (405)
Q Consensus       253 ~f~~~gGi~~L~~lL~s~~------------~~-------~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv  313 (405)
                      .++..|++++|..++++..            ..       ..+...++.+|.+||..     +.+....+...+.++.|+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~-----s~~~~~~v~~~~~l~~l~  188 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA-----RDEIHEAVATKQTILRLL  188 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHhcccHHHHH
Confidence            8899999999999985310            00       11334577888898853     445566777889999999


Q ss_pred             HhccCC---ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCc
Q 015496          314 DLTASA---DLDLQEKALAAIKNLLQLRTTEALVLKDFCGL  351 (405)
Q Consensus       314 ~LL~~~---D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl  351 (405)
                      .+|.+.   ..+++..++.+|..|+....+..+.+.+ .|.
T Consensus       189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-~~~  228 (684)
T 4gmo_A          189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-DQE  228 (684)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-CCS
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-cch
Confidence            988543   4689999999999999988777788874 444

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.96  E-value=6.1e-08  Score=86.91  Aligned_cols=154  Identities=16%  Similarity=0.147  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHh
Q 015496          129 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV  208 (405)
Q Consensus       129 d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~  208 (405)
                      +.......++.|.++  +.+.+..|+..|..+-.          .+.++.|+.+|+++++.+|..|+++|+.+..     
T Consensus        12 ~~~~~~~~i~~L~~~--~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-----   74 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-----   74 (201)
T ss_dssp             CHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred             CCcchHHHHHHhcCC--CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence            344455566777665  56788888888876532          2568999999999999999999999998753     


Q ss_pred             HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496          209 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       209 Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~  288 (405)
                            ..+++.|+.+|.++++.+|..|+++|+.+.  .+         ..++.|..++.++  +..+|..|++++..+.
T Consensus        75 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~  135 (201)
T 3ltj_A           75 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIG--DE---------RAVEPLIKALKDE--DWFVRIAAAFALGEIG  135 (201)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCS--SHHHHHHHHHHHHHHT
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHcCC--CHHHHHHHHHHHHHhC
Confidence                  257899999999988999999999999873  22         3678888888875  6778999999998874


Q ss_pred             hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496          289 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL  334 (405)
Q Consensus       289 ~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L  334 (405)
                      .                ...++.|..+|.+++..++..++.+|..+
T Consensus       136 ~----------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  165 (201)
T 3ltj_A          136 D----------------ERAVEPLIKALKDEDGWVRQSAADALGEI  165 (201)
T ss_dssp             C----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             C----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            1                34778899999999999999999999988

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.92  E-value=6.1e-08  Score=87.60  Aligned_cols=154  Identities=16%  Similarity=0.122  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhH
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ  209 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q  209 (405)
                      .+.+...++.|.++  +...+..|+..|..+-.          -++++.|+.+|.++++.+|..|+++|+.+..      
T Consensus        18 ~~~~~~L~~~L~~~--~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------   79 (211)
T ss_dssp             GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred             HhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence            34455556666644  57788888888887532          2578999999999999999999999998863      


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                           .++++.|+.+|.++++.+|..|+++|+.+..  +         ..++.|+.++.++  +..+|..|+++|..+..
T Consensus        80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~  141 (211)
T 3ltm_A           80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKALKDE--DWFVRIAAAFALGEIGD  141 (211)
T ss_dssp             -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCC--CHHHHHHHHHHHHHcCC
Confidence                 3578999999998888999999999998732  2         3678888888775  67789999999988741


Q ss_pred             chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                                      ...++.|..+|.+++..++..++.+|..+.
T Consensus       142 ----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~  171 (211)
T 3ltm_A          142 ----------------ERAVEPLIKALKDEDGWVRQSAADALGEIG  171 (211)
T ss_dssp             ----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred             ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence                            236788889998889999999999998884

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=98.84  E-value=4.9e-08  Score=87.56  Aligned_cols=151  Identities=15%  Similarity=0.136  Sum_probs=121.8

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV  212 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v  212 (405)
                      +...++.+.++  +...+..|+..|..+-.          .+.++.|+.+|+++++.+|..|+++|+.+..         
T Consensus        47 ~~~L~~~l~~~--~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------  105 (201)
T 3ltj_A           47 VEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---------  105 (201)
T ss_dssp             HHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence            44455566543  56788888888876532          2578999999999999999999999999753         


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh
Q 015496          213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL  292 (405)
Q Consensus       213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~  292 (405)
                        ..+++.|+.++.++++.+|..|+++|+.+-  .         ...++.|..++.++  +..+|..|+++|..+..   
T Consensus       106 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~---  167 (201)
T 3ltj_A          106 --ERAVEPLIKALKDEDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG---  167 (201)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS---
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc---
Confidence              247899999999999999999999999983  2         24678899999876  67799999999998741   


Q ss_pred             ccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       293 ~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                                   ...++.|..++..++..++..|..+|..+-
T Consensus       168 -------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          168 -------------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                         236778888898899999999999998874

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=98.82  E-value=4.9e-08  Score=88.19  Aligned_cols=154  Identities=14%  Similarity=0.125  Sum_probs=121.8

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV  212 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v  212 (405)
                      +...++.+.++  +...+..|+..|..+-.          .+.++.|+.+|+++++.+|..|+++|+.+..         
T Consensus        52 ~~~L~~~l~~~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------  110 (211)
T 3ltm_A           52 VEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---------  110 (211)
T ss_dssp             HHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------
Confidence            44455566654  67888888888887632          3578999999999999999999999999863         


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh
Q 015496          213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL  292 (405)
Q Consensus       213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~  292 (405)
                        .++++.|++++.+++..+|..|+++|+.+-  .+         ..++.|..+++++  +..+|..|+.+|..+..   
T Consensus       111 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~---  172 (211)
T 3ltm_A          111 --ERAVEPLIKALKDEDWFVRIAAAFALGEIG--DE---------RAVEPLIKALKDE--DGWVRQSAADALGEIGG---  172 (211)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS---
T ss_pred             --HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CH---------HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc---
Confidence              257899999999999999999999999982  22         3678899999875  67899999999998741   


Q ss_pred             ccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       293 ~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                                   ...++.|..++..++..++..|..+|..+....
T Consensus       173 -------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          173 -------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             -------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             -------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence                         246778888899999999999999999887643

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.81  E-value=2.2e-08  Score=107.83  Aligned_cols=192  Identities=15%  Similarity=0.085  Sum_probs=146.3

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHH
Q 015496          136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQN-NPLVQKQVL  213 (405)
Q Consensus       136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~-lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vl  213 (405)
                      .++.|.++  +.++|..|+..|.+++++..+...+.+.|++.+++. +|..++.+||..|+++|+|++.. .+++...++
T Consensus        39 ll~~L~S~--~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~  116 (684)
T 4gmo_A           39 VLKDLKSP--DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY  116 (684)
T ss_dssp             HHHHHSSS--CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHcCCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence            34556554  567899999999999998888889999999998765 78889999999999999999975 588999999


Q ss_pred             HcCcHHHHHHhhcCCCH---------------------HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcC-CC
Q 015496          214 ELGALSKLMKMVKSSFV---------------------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-SS  271 (405)
Q Consensus       214 e~G~lp~Ll~LL~s~~~---------------------~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s-~~  271 (405)
                      +.|++++|+.++++...                     .+...++++|.+++.++..+.+.+...++++.|+.+|.+ +.
T Consensus       117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~  196 (684)
T 4gmo_A          117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI  196 (684)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred             HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence            99999999999863211                     123467888888988888999999999999999998843 33


Q ss_pred             ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcH---HHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL---KSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       272 ~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l---~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                      ....++..|+.+|+.|+.     .++.....+.+.+..   ..+..+.++.+ ..+..++..|.++.
T Consensus       197 ~~~~v~~~a~~~L~~ls~-----dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~  257 (684)
T 4gmo_A          197 APQDIYEEAISCLTTLSE-----DNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF  257 (684)
T ss_dssp             SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhc-----cCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence            457789999999999985     345556666666543   33333333444 34556666777663

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.76  E-value=4.7e-07  Score=85.27  Aligned_cols=121  Identities=10%  Similarity=0.079  Sum_probs=82.4

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496          183 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  262 (405)
Q Consensus       183 L~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~  262 (405)
                      ++++++.+|..|+++|+.+...++....     .+++.|+.+++++++.+|..|+++|+.+..           ...++.
T Consensus       100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~  163 (280)
T 1oyz_A          100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPL  163 (280)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHH
Confidence            3566777777777777777655553332     346777777777777777777777776532           136777


Q ss_pred             HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       263 L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                      |+.+++++  +..+|..|++++..+..      .        ....++.|+.+|..++..++..++.+|..+.
T Consensus       164 L~~~l~d~--~~~vr~~a~~aL~~~~~------~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          164 LINLLKDP--NGDVRNWAAFAININKY------D--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             HHHHHTCS--SHHHHHHHHHHHHHHTC------C--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCC--CHHHHHHHHHHHHhhcc------C--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence            78887765  55677888888877631      1        1245677888888888888888888888775

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=98.71  E-value=5.1e-07  Score=85.03  Aligned_cols=146  Identities=11%  Similarity=0.035  Sum_probs=110.2

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      +...+..++..|..+......    ..-..++.|+.+|+++++.+|..|+++|+.+..           .+++|.|+.++
T Consensus       104 ~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l  168 (280)
T 1oyz_A          104 SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLL  168 (280)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHH
Confidence            456666677776665321110    112357888999999999999999999998753           25899999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                      ++++..+|..|+++|+.+..+.+         ..++.|..+++++  +..+|..|+++|..+.                +
T Consensus       169 ~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~----------------~  221 (280)
T 1oyz_A          169 KDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK--NEEVRIEAIIGLSYRK----------------D  221 (280)
T ss_dssp             TCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS--CHHHHHHHHHHHHHTT----------------C
T ss_pred             cCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC--CHHHHHHHHHHHHHhC----------------C
Confidence            99999999999999999843333         2468899999876  6778999999998864                1


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          306 RFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                      ...++.|+.+|..++  ++..++.+|..+.
T Consensus       222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~  249 (280)
T 1oyz_A          222 KRVLSVLCDELKKNT--VYDDIIEAAGELG  249 (280)
T ss_dssp             GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred             HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence            357888999997655  8888898888874

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.43  E-value=5.1e-07  Score=98.48  Aligned_cols=174  Identities=14%  Similarity=0.074  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC
Q 015496          150 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF  229 (405)
Q Consensus       150 k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~  229 (405)
                      +..|...|..++....  ..+.. ..++.+..++++++..+|..|+++||+++.+.++.... .-.+.+|.|+.++++++
T Consensus       338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~  413 (852)
T 4fdd_A          338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKK  413 (852)
T ss_dssp             HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCC
Confidence            4455555555543322  12222 35677778888999999999999999999987653332 22468999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcH
Q 015496          230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL  309 (405)
Q Consensus       230 ~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l  309 (405)
                      +.+|..|+|+|+.++...++....-+-.+.++.|+..+.++  +.++|..|++++.+++...    .+...+.+  ..++
T Consensus       414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~----~~~l~~~l--~~ll  485 (852)
T 4fdd_A          414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEA----CTELVPYL--AYIL  485 (852)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHH----GGGGGGGH--HHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHh----hHhhHhHH--HHHH
Confidence            99999999999998875332111111124678888888775  6789999999999999642    22233332  4678


Q ss_pred             HHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          310 KSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       310 ~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                      +.|+.++...+......++.++..++
T Consensus       486 ~~L~~~l~~~~~~~~~~~~~ai~~l~  511 (852)
T 4fdd_A          486 DTLVFAFSKYQHKNLLILYDAIGTLA  511 (852)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            88888887777666666777777775

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.42  E-value=2.3e-08  Score=84.58  Aligned_cols=119  Identities=10%  Similarity=0.070  Sum_probs=89.2

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496          174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM  253 (405)
Q Consensus       174 Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~  253 (405)
                      ..++.++.+|+++++.+|..|+++|+.+...            .++.|+.+|+++++.+|..|+++|+.+-  .+     
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~-----   72 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE-----   72 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGC--SH-----
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcC--CH-----
Confidence            4678888999999999999999999876421            3689999999888999999999999873  22     


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496          254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN  333 (405)
Q Consensus       254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~  333 (405)
                          ..++.|..+|+++  +..+|..|+++|..+..                ...++.|..+|..+|..++..|+.+|..
T Consensus        73 ----~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~----------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 ----RAVEPLIKLLEDD--SGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ----HHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ----HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                2478888888765  56789999999998741                2357888999988899999999888764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.37  E-value=6.8e-06  Score=84.28  Aligned_cols=177  Identities=11%  Similarity=0.010  Sum_probs=122.5

Q ss_pred             CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496          145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  224 (405)
Q Consensus       145 ~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L  224 (405)
                      .+.+.|..|++.|..+++.....  ......+|.+..+++++++.+|..|+.+++.++...+.-   ......+|.+..+
T Consensus       176 ~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~  250 (588)
T 1b3u_A          176 DTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQA  250 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHH
Confidence            36788889999999888765432  223456888889999999999999999999999865432   2234578899999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496          225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  304 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~  304 (405)
                      +++++..+|..|+.+|+.++....+   .......++.+..+++++  +..+|..|++.+..++..    ..++......
T Consensus       251 ~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~----~~~~~~~~~~  321 (588)
T 1b3u_A          251 AEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCEN----LSADCRENVI  321 (588)
T ss_dssp             HTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHT----SCTTTHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHH----hChhhhhhHH
Confidence            9888889999999999999865322   122345678899999876  667899999999999863    2222111011


Q ss_pred             hCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          305 DRFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                      -..+++.+..++...+..++..++.+|..++
T Consensus       322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          322 MSQILPCIKELVSDANQHVKSALASVIMGLS  352 (588)
T ss_dssp             HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            2244555555555555555555555554443

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.33  E-value=5.2e-06  Score=85.13  Aligned_cols=172  Identities=11%  Similarity=0.020  Sum_probs=124.0

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      +...+..+++.+..++......  +..-..+|.++.+|..++..+|..|+.+++.++.....   ...-...+|.|+.++
T Consensus       415 ~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~  489 (588)
T 1b3u_A          415 KWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMS  489 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTT
T ss_pred             CchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHh
Confidence            3455666666666554332211  11112467888899999999999999999999875332   122346789999988


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                      .+++..+|..++++++.++.....   .++....++.|..+++++  +..+|..+++++..++..    .++    .+..
T Consensus       490 ~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~----~~~----~~~~  556 (588)
T 1b3u_A          490 GDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----LDN----STLQ  556 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SCH----HHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHH----hch----hhhH
Confidence            888889999999999999875332   233345778899988876  567899999999999853    221    2334


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          306 RFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                      ..+++.|..++...|.++++.|..++..|.
T Consensus       557 ~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          557 SEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            567788888888889999999999998774

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.32  E-value=3e-05  Score=76.16  Aligned_cols=193  Identities=17%  Similarity=0.104  Sum_probs=145.1

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-ccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015496          128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  206 (405)
Q Consensus       128 ~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~-Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~  206 (405)
                      ++......+++.|.+.  +.+++..+|-.|.. +-++.+.|..|+..||+..|+......+.+.+..+..+++.+.-. .
T Consensus       115 sps~ra~~iiekL~~~--~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~-v  191 (339)
T 3dad_A          115 QLSVRVNAILEKLYSS--SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLF-V  191 (339)
T ss_dssp             CHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTS-H
T ss_pred             CcHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhc-c
Confidence            4556777888888865  57889999999999 557899999999999999999999999999999999999999964 3


Q ss_pred             HhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-------cCc---HHHHHHhhcC-CCccH
Q 015496          207 LVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-------EAG---DLMLQDILGN-SSFEI  274 (405)
Q Consensus       207 ~~Q~~vl-e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~-------~gG---i~~L~~lL~s-~~~~~  274 (405)
                      .--+.++ ....|..+..++.+....+...|+.-|-+++-..+.....+.+       ..|   ++.|+.+|++ +..+.
T Consensus       192 ~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~  271 (339)
T 3dad_A          192 DGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP  271 (339)
T ss_dssp             HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred             ccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence            4444455 3467888999999877788888888888888776655544433       223   8899999972 12478


Q ss_pred             HHHHHHHHHHHHHhhchhccCCC----CcchhHHhCCcHHHHHHhccCC--ChHHHHH
Q 015496          275 RLHRKAVSLVGDLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTASA--DLDLQEK  326 (405)
Q Consensus       275 kl~~kA~~lLs~L~~~~~~~~~~----~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~  326 (405)
                      .++.+|..+|..+....   ++.    +..+.+.+.|+=..+..++...  |++++++
T Consensus       272 elq~~amtLIN~lL~~a---pd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          272 ELLVYTVTLINKTLAAL---PDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHHHHHHHC---SSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            89999999999988641   222    2334455566666666666654  6666654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.31  E-value=1.1e-05  Score=74.65  Aligned_cols=173  Identities=10%  Similarity=0.107  Sum_probs=128.4

Q ss_pred             CCHHHHHHHHHHHHHccCC-CCc-hhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHH
Q 015496          145 LSLEDSQRALQELLILVEP-IDN-ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSK  220 (405)
Q Consensus       145 ~t~e~k~~AL~~L~~Lve~-iDn-A~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~  220 (405)
                      .+-..|..|+..|..+++. .+. ..++.+  .++.|...|. ..+..+|..|+.+++.++..-. .....+  ...+|.
T Consensus        27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~--i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~  102 (242)
T 2qk2_A           27 KKWTLRKESLEVLEKLLTDHPKLENGEYGA--LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPS  102 (242)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCSSBCCCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHccCCCCCCCCHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHH
Confidence            3678889999999988865 221 223332  3677888884 8999999999999999996411 111111  247899


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC--
Q 015496          221 LMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV--  298 (405)
Q Consensus       221 Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~--  298 (405)
                      |+..+.+.+..+|..|..||.+++...+  .+.     -++.|...+++.  +..+|..++.+|..++..    ..++  
T Consensus       103 ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~-----ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~----~~~~~~  169 (242)
T 2qk2_A          103 LLEKFKEKKPNVVTALREAIDAIYASTS--LEA-----QQESIVESLSNK--NPSVKSETALFIARALTR----TQPTAL  169 (242)
T ss_dssp             HHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT----CCGGGC
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----cCCCCc
Confidence            9999999999999999999999987643  222     356777888875  678999999999997642    2222  


Q ss_pred             cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496          299 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       299 ~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~  336 (405)
                      ....+  ..+++.|+.+|...+..+|..|..++..+..
T Consensus       170 ~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          170 NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            12233  2689999999999999999999999999874

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.31  E-value=6e-06  Score=90.02  Aligned_cols=180  Identities=14%  Similarity=0.082  Sum_probs=127.8

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhc-----------CC-----------CCHHHHHHHHHHHHHH
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQL-----------NH-----------PDTDIRKISAWILGKA  201 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~--~Ggi~~Lv~lL-----------~s-----------~~~~Ir~~Aa~~Lg~~  201 (405)
                      +.+.+..|++-+..+++.....+.+..  ...+|.++..+           ..           .+-.+|..|+.+|+.+
T Consensus       269 ~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~l  348 (852)
T 4fdd_A          269 DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVL  348 (852)
T ss_dssp             SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHH
Confidence            567788888888888765422221111  13466666666           22           2235799999999999


Q ss_pred             hcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015496          202 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV  281 (405)
Q Consensus       202 aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~  281 (405)
                      +...++   .++. ..+|.+..++.+++..+|..|+++|++++.+.......+ -.+.++.|..+++++  +..+|..|+
T Consensus       349 a~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~--~~~Vr~~a~  421 (852)
T 4fdd_A          349 ANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDK--KALVRSITC  421 (852)
T ss_dssp             HHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred             HHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCC--CHHHHHHHH
Confidence            986542   2222 467888889988888999999999999998776433222 245788999999876  678999999


Q ss_pred             HHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          282 SLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       282 ~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      |++..++....   .......  -.++++.+++.|..+++.+++.|+++|.+++..
T Consensus       422 ~~l~~l~~~~~---~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          422 WTLSRYAHWVV---SQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             HHHHHTHHHHH---HSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---cchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            99999986321   0111111  136788899999888999999999999999853

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.31  E-value=1e-05  Score=85.25  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=115.5

Q ss_pred             HhHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015496          112 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI  190 (405)
Q Consensus       112 ~r~~~L~~a~~~~-~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~I  190 (405)
                      +|.+-+++++-.+ .|.+.....-..++.+.++  +.+.|..+.-.+..+.+..   .++. .-.+..+.+.|+++++.+
T Consensus        29 ~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~--~~~~Krl~yl~l~~~~~~~---~e~~-~l~~n~l~kdL~~~n~~i  102 (591)
T 2vgl_B           29 KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTD--NLELKKLVYLYLMNYAKSQ---PDMA-IMAVNSFVKDCEDPNPLI  102 (591)
T ss_dssp             HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSS--CHHHHHHHHHHHHHHHHHS---HHHH-HTTHHHHGGGSSSSSHHH
T ss_pred             HHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccC---chHH-HHHHHHHHHHcCCCCHHH
Confidence            3556666665443 3444334444556655443  5677766666666654421   1222 234677888899999999


Q ss_pred             HHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCC
Q 015496          191 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS  270 (405)
Q Consensus       191 r~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~  270 (405)
                      |..|..+|+++.  +++....+     +|.+.+++.++++.+|.+|++|+..+.+.++....   ..+.++.|..+|.++
T Consensus       103 r~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~  172 (591)
T 2vgl_B          103 RALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADS  172 (591)
T ss_dssp             HHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCC
Confidence            999999999986  56555543     58899999999999999999999999998876443   245678999999875


Q ss_pred             CccHHHHHHHHHHHHHHhhc
Q 015496          271 SFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       271 ~~~~kl~~kA~~lLs~L~~~  290 (405)
                        +..++..|+.++..++..
T Consensus       173 --d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          173 --NPMVVANAVAALSEISES  190 (591)
T ss_dssp             --CHHHHHHHHHHHHHHTTS
T ss_pred             --ChhHHHHHHHHHHHHHhh
Confidence              678999999999999853

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.30  E-value=5.9e-05  Score=70.68  Aligned_cols=186  Identities=13%  Similarity=0.149  Sum_probs=143.5

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496          132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~-~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      ..-..++.|.+  .+..-+.++|..|++++...|-.-... =-.+++.++.++.+.|+.+-..|..||+++..|.|-.-+
T Consensus        34 ~l~~L~~LL~d--kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           34 ALFLILELAGE--DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             HHHHHHHHHhc--cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            34445555543  367889999999999998765433333 336899999999999999999999999999999998777


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      .+.+  .+..|..++.++++-.+..|.-.++.+ +--.. ..     ..+..|..++.|+  +..+|.-+..++.+++..
T Consensus       112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~-~~-----~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~  180 (265)
T 3b2a_A          112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKL-QPLED-SK-----LVRTYINELVVSP--DLYTKVAGFCLFLNMLNS  180 (265)
T ss_dssp             HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCC-CH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGG
T ss_pred             HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcC-Ccccc-hH-----HHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcc
Confidence            7764  567888999988888888888888887 22111 12     2467889999765  788999999999999864


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                         ..+++...     .++.-+.++|++.|+.+++.|+.++..+++.+
T Consensus       181 ---S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          181 ---SADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             ---CSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             ---cCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence               23444333     35556888999999999999999999999763

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.28  E-value=2.6e-05  Score=82.06  Aligned_cols=166  Identities=16%  Similarity=0.161  Sum_probs=128.0

Q ss_pred             CHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496          146 SLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  224 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L  224 (405)
                      +.+.|..++..+-++.- ..|.      ..+++.+++++.+++..+|..+.-.+..++..+|+...     -+++.|.+-
T Consensus        26 ~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~-----l~~n~l~kd   94 (591)
T 2vgl_B           26 KKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAI-----MAVNSFVKD   94 (591)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHH-----TTHHHHGGG
T ss_pred             CHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHH-----HHHHHHHHH
Confidence            34566666666655432 2221      23688899999999999999999999999987776543     346788888


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496          225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  304 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~  304 (405)
                      +.++++.+|..|+.+||++.  .+.....+     ++.+..++.++  ++.+|++|++++..++..     +++   .+.
T Consensus        95 L~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~--~~~VRk~A~~al~~i~~~-----~p~---~~~  157 (591)
T 2vgl_B           95 CEDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDE--DPYVRKTAAVCVAKLHDI-----NAQ---MVE  157 (591)
T ss_dssp             SSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCS--CHHHHHHHHHHHHHHHHS-----SCC---CHH
T ss_pred             cCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCC--ChHHHHHHHHHHHHHHhh-----Chh---hcc
Confidence            99989999999999999984  44444433     46788889875  788999999999999862     343   334


Q ss_pred             hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015496          305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  339 (405)
Q Consensus       305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~  339 (405)
                      +.++++.+..+|..+|+.++..|+.+|..+.....
T Consensus       158 ~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~  192 (591)
T 2vgl_B          158 DQGFLDSLRDLIADSNPMVVANAVAALSEISESHP  192 (591)
T ss_dssp             HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred             cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence            46899999999999999999999999999987643

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.14  E-value=6.3e-05  Score=74.58  Aligned_cols=199  Identities=14%  Similarity=0.133  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-h--hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-A--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  206 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A--~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~  206 (405)
                      ..++...+..+.+.+.+.+.|..|+..+..+++-+.. -  ..+.+. .++.+..++.++++++|..++++++.++...+
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~  249 (462)
T 1ibr_B          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF-IMQVVCEATQCPDTRVRVAALQNLVKIMSLYY  249 (462)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHH-HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3456666677776544678888888888886654321 0  111111 35566677788999999999999999998765


Q ss_pred             HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh------------------hh---H----HHH-------
Q 015496          207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL------------------AG---Q----EMF-------  254 (405)
Q Consensus       207 ~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~------------------~~---~----~~f-------  254 (405)
                      +.-...+..+.++.++..+++.++.++..|+..++.+++...                  ..   .    ..+       
T Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~  329 (462)
T 1ibr_B          250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT  329 (462)
T ss_dssp             GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence            421111111566667777776667777777777776654310                  00   0    000       


Q ss_pred             --------------------------Hh-------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC-cc
Q 015496          255 --------------------------YV-------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EP  300 (405)
Q Consensus       255 --------------------------~~-------~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~-~~  300 (405)
                                                ..       ...++.+...++++  +.++|..|+++++.++.+    ..++ ..
T Consensus       330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~----~~~~~~~  403 (462)
T 1ibr_B          330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEG----PEPSQLK  403 (462)
T ss_dssp             TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSS----SCTTTTC
T ss_pred             HHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcC----CcHHHHH
Confidence                                      00       01233344445543  566777788888877742    2211 11


Q ss_pred             hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          301 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       301 ~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      +.+  ..+++.++.+|..+++.+|..|+++|++++..
T Consensus       404 ~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          404 PLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             TTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            222  46899999999999999999999999999853

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.13  E-value=9.4e-05  Score=69.63  Aligned_cols=182  Identities=9%  Similarity=0.020  Sum_probs=129.1

Q ss_pred             CCHHHHHHHHHHHHH-ccCC-CCc---hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCC--hHhH-HHHHHc
Q 015496          145 LSLEDSQRALQELLI-LVEP-IDN---ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNN--PLVQ-KQVLEL  215 (405)
Q Consensus       145 ~t~e~k~~AL~~L~~-Lve~-iDn---A~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN--~~~Q-~~vle~  215 (405)
                      ..-.+|..|++.|.. +++. .+.   ..++.+  .+..|.+.| +..+..++..|+.+|+.++.+=  +..+ ....  
T Consensus        28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~--~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~--  103 (249)
T 2qk1_A           28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN--LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS--  103 (249)
T ss_dssp             SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCccccCcccHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--
Confidence            367889999999999 8753 121   123333  267777888 6889999999999999999642  2333 2222  


Q ss_pred             CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015496          216 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM  295 (405)
Q Consensus       216 G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~  295 (405)
                      -.+|.++..+.+....++..+.+|+-+++.+..+....-.-...++.|...|+++  +..+|..++.+|..++..    .
T Consensus       104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~----~  177 (249)
T 2qk1_A          104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE----E  177 (249)
T ss_dssp             HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH----C
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----c
Confidence            3689999999998899999999999999886532110000001456778888876  568999999999999863    1


Q ss_pred             CC--CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496          296 HK--VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       296 ~~--~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~  336 (405)
                      ..  ..........+++.|..++...+.++|+.|..++..+..
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            11  111112225799999999999999999999999998863

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.06  E-value=4.2e-05  Score=82.23  Aligned_cols=183  Identities=9%  Similarity=0.099  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhc
Q 015496          148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVK  226 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll~LL~  226 (405)
                      ..+..|.+.|..++....  ..+.. ..++.+...+++++..+|..|++++|.++.+.. +.-...++ ..+|.|+..+.
T Consensus       346 ~~r~~a~~~L~~l~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~  421 (861)
T 2bpt_A          346 NVSMSAGACLQLFAQNCG--NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMN  421 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGG
T ss_pred             cHHHHHHHHHHHHHHHcc--HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcC
Confidence            345566666666554332  11111 235556667788899999999999999998753 32222332 57899999999


Q ss_pred             CCCHHHHHHHHHHHHHHhcCChhhH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496          227 SSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  304 (405)
Q Consensus       227 s~~~~v~~kAl~ALS~lir~~~~~~--~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~  304 (405)
                      ++++.+|..++|+|+.++...++..  ..+ -...++.|...++++   .+++..|++++.+++..-.+.......+.+ 
T Consensus       422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~~~-  496 (861)
T 2bpt_A          422 DQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIYNFY-  496 (861)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH-
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhHHHH-
Confidence            9889999999999999987533210  011 113467788888763   678999999999998641000011122222 


Q ss_pred             hCCcHHHHHHhccCCC--hHHHHHHHHHHHHHhcCChh
Q 015496          305 DRFFLKSVVDLTASAD--LDLQEKALAAIKNLLQLRTT  340 (405)
Q Consensus       305 ~~g~l~~Lv~LL~~~D--~~v~E~al~aL~~L~~~~~~  340 (405)
                       ..+++.|+.++.+.|  ..++..++.+|..++.....
T Consensus       497 -~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          497 -PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             -HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             -HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence             256788888888644  78999999999999865443

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.03  E-value=0.0001  Score=78.15  Aligned_cols=199  Identities=15%  Similarity=0.118  Sum_probs=135.3

Q ss_pred             hHHHHHHHHHHc-CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHH
Q 015496          113 RQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIR  191 (405)
Q Consensus       113 r~~~L~~a~~~~-~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir  191 (405)
                      |.+-+++++-.+ .|.+.....-++++.+.++  +.+.|..+.-.+..+.+.-   .++.-+ .+..|.+-|+++++-+|
T Consensus        51 k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~--~~~~Krl~Yl~~~~~~~~~---~e~~~l-~in~l~kDL~~~n~~vr  124 (618)
T 1w63_A           51 RCRNVAKLLYMHMLGYPAHFGQLECLKLIASQ--KFTDKRIGYLGAMLLLDER---QDVHLL-MTNCIKNDLNHSTQFVQ  124 (618)
T ss_dssp             HHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSS--SHHHHHHHHHHHHHHCCCC---HHHHHH-HHHHHHHHHSCSSSHHH
T ss_pred             HHHHHHHHHHHHHcCCCCcchHHHHHHHHcCC--chHHHHHHHHHHHHHhCCC---cHHHHH-HHHHHHHhcCCCCHhHH
Confidence            334455444322 2333233344445555533  5667766666677665432   232221 46677888899999999


Q ss_pred             HHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCC
Q 015496          192 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS  271 (405)
Q Consensus       192 ~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~  271 (405)
                      ..|+++||++.  +++.-+     ..++.+.+++.++++.+|.+|+.|+..+.+.+|....     +-++.|..+|.+. 
T Consensus       125 ~lAL~~L~~i~--~~~~~~-----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~-  191 (618)
T 1w63_A          125 GLALCTLGCMG--SSEMCR-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEK-  191 (618)
T ss_dssp             HHHHHHHHHHC--CHHHHH-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCC-
T ss_pred             HHHHHHHHhcC--CHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCC-
Confidence            99999999998  354332     4678999999999999999999999999998887554     4566777888765 


Q ss_pred             ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC---------------CChHHHHHHHHHHHHHhc
Q 015496          272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       272 ~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~---------------~D~~v~E~al~aL~~L~~  336 (405)
                       +..++..|++++..++..     +++....+.  .+++.++.+|..               .++-.|..++.+|..+..
T Consensus       192 -d~~V~~~Al~~L~~i~~~-----~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~  263 (618)
T 1w63_A          192 -NHGVLHTSVVLLTEMCER-----SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR  263 (618)
T ss_dssp             -CHHHHHHHHHHHHHHCCS-----HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred             -CHhHHHHHHHHHHHHHHh-----ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence             678999999999999842     222222232  567777776652               477788888888888876


Q ss_pred             CC
Q 015496          337 LR  338 (405)
Q Consensus       337 ~~  338 (405)
                      ..
T Consensus       264 ~~  265 (618)
T 1w63_A          264 ND  265 (618)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.01  E-value=4.7e-05  Score=82.01  Aligned_cols=180  Identities=15%  Similarity=0.194  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HhHHHHHHcCcHHHHHHhhcC
Q 015496          149 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS  227 (405)
Q Consensus       149 ~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~-~~Q~~vle~G~lp~Ll~LL~s  227 (405)
                      .|..|...|..+++...  ..+.. ..++.+...|.+++..+|..|++++|.++.+.+ +.-...+ ...+|.|+..+++
T Consensus       344 ~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d  419 (876)
T 1qgr_A          344 PCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD  419 (876)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC
Confidence            45566666655544322  12221 345666677888999999999999999998764 3222222 3589999999999


Q ss_pred             CCHHHHHHHHHHHHHHhcCChhhH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc-------c---C
Q 015496          228 SFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE-------N---M  295 (405)
Q Consensus       228 ~~~~v~~kAl~ALS~lir~~~~~~--~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~-------~---~  295 (405)
                      ++..+|..|+|+|+.++...++..  ..++ ...++.|...+.++   .+++..+++++.+++....+       .   .
T Consensus       420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~  495 (876)
T 1qgr_A          420 PSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPA  495 (876)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            889999999999999998765421  0111 23567777888763   67899999999999864210       0   0


Q ss_pred             CCCcchhHHhCCcHHHHHHhccCC---ChHHHHHHHHHHHHHhcCC
Q 015496          296 HKVEPPLFRDRFFLKSVVDLTASA---DLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       296 ~~~~~~~l~~~g~l~~Lv~LL~~~---D~~v~E~al~aL~~L~~~~  338 (405)
                      .....+.+  ..+++.|..++...   +..++..++.++..++...
T Consensus       496 ~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~  539 (876)
T 1qgr_A          496 TYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS  539 (876)
T ss_dssp             CCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred             chhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence            01122232  25788888888764   3578888999999888653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.99  E-value=5.3e-06  Score=69.80  Aligned_cols=87  Identities=17%  Similarity=0.208  Sum_probs=72.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY  255 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~  255 (405)
                      ++.|+.+|+++++.+|..|+++|+.+..  +         .+++.|+.++++++..+|..|+++|+.+-  .+       
T Consensus        44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~~-------  103 (131)
T 1te4_A           44 FEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG--GE-------  103 (131)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH-------
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--cH-------
Confidence            7999999999999999999999999863  2         35899999999888899999999999873  22       


Q ss_pred             hcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496          256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGD  286 (405)
Q Consensus       256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~  286 (405)
                        .+++.|..+++++  +..+|..|+++|..
T Consensus       104 --~a~~~L~~~l~d~--~~~vr~~A~~aL~~  130 (131)
T 1te4_A          104 --RVRAAMEKLAETG--TGFARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHhCC--CHHHHHHHHHHHHh
Confidence              3578889999865  56788888887653

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=97.96  E-value=3e-05  Score=75.09  Aligned_cols=136  Identities=15%  Similarity=0.188  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH--hcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHH-
Q 015496          148 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVG--QLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLM-  222 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~--lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~--G~lp~Ll-  222 (405)
                      +.-..||+.|+++.+++...-.|+... +..|-+  |..+..+.+|..|+++||.+-+|||.+-+.|.+.  ..+..+. 
T Consensus        43 ~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~  121 (315)
T 3qml_C           43 ARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA  121 (315)
T ss_dssp             HHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence            345689999999999999888887643 444444  4456788999999999999999999999988875  3333333 


Q ss_pred             ---HhhcC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          223 ---KMVKS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       223 ---~LL~s---~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                         .++..   ....+.+.-+++|..++.+..    .| ...|+..|..++...+.+..+|+|++-++.++-.
T Consensus       122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~----~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE----DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST----TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHHHHHHHHHhcChH----hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence               33322   234556777999999998752    24 3568888888886433367789999999999874

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.94  E-value=0.00013  Score=82.59  Aligned_cols=192  Identities=10%  Similarity=0.085  Sum_probs=133.2

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496          134 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV  212 (405)
Q Consensus       134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v  212 (405)
                      ...++.+.++  +.+.|..|+..|...+...-. ...-.....++.+++.|.++++.+|..|+.+|+.++..-+..+   
T Consensus         9 ~~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~---   83 (1230)
T 1u6g_C            9 SNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ---   83 (1230)
T ss_dssp             HHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH---
T ss_pred             HHHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHH---
Confidence            3444444443  567888888888776533100 0011112357788999999999999999999999998765411   


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015496          213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL  287 (405)
Q Consensus       213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~-----~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L  287 (405)
                      + ...++.|+..+.++++.+|..|..+|+.++....+.     .....-...++.|...+.+. .+..++..|+.++..+
T Consensus        84 ~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~~~  161 (1230)
T 1u6g_C           84 V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMADM  161 (1230)
T ss_dssp             H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHH
Confidence            1 236788899888888888999999999998775442     01111234678888888842 3678899999999999


Q ss_pred             hhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          288 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       288 ~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                      +..    ..+...+.+  ..+++.+...|.+++..+|+.|+.+|..++...
T Consensus       162 ~~~----~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~  206 (1230)
T 1u6g_C          162 LSR----QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC  206 (1230)
T ss_dssp             HHH----TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred             HHH----hHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence            853    122222222  357788888898889999999999999998654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=97.94  E-value=3.3e-05  Score=76.62  Aligned_cols=199  Identities=10%  Similarity=0.002  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhH------H------HhcCCHHHHHHhcCCCCHHHHHHHHHH
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND------L------SKLGGLSVLVGQLNHPDTDIRKISAWI  197 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~------~------~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~  197 (405)
                      +..+...+.++.+.+.+.+.|..|...|..++.......+      .      .+...-..|+..|.++++.+ ..++.+
T Consensus        34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~  112 (462)
T 1ibr_B           34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQC  112 (462)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHH
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHH
Confidence            4566677788888666788899998889988755321110      0      11122345778888888888 999999


Q ss_pred             HHHHhcCChHhHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCCCccH
Q 015496          198 LGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEI  274 (405)
Q Consensus       198 Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~--~~~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~~~~~  274 (405)
                      |+.++........   -.+.+|.|+..+.++  ++.++..|+.+|+.+++.. +.....+. ...++.+..+++++..+.
T Consensus       113 i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~  188 (462)
T 1ibr_B          113 VAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSN  188 (462)
T ss_dssp             HHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCH
T ss_pred             HHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCH
Confidence            9999975211101   137899999999988  8889999999999999865 22211111 135678888888752257


Q ss_pred             HHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          275 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       275 kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      .+|..|+.++.+++..-.++...    ......+++.+..++.++|.+++..++.+|..++..
T Consensus       189 ~vr~~a~~~l~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  247 (462)
T 1ibr_B          189 NVKLAATNALLNSLEFTKANFDK----ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL  247 (462)
T ss_dssp             HHHHHHHHHHHHHTTTTHHHHTS----HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            78999999999976320000000    001112467777788888999999999999998854

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=97.83  E-value=0.00067  Score=71.80  Aligned_cols=163  Identities=11%  Similarity=-0.022  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496          147 LEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       147 ~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      ...|..++..+-++.- ..|.      .-|+..+++++.+++.++|....-.+...+..+|+....     ++..|.+-+
T Consensus        48 ~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL  116 (618)
T 1w63_A           48 NTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDL  116 (618)
T ss_dssp             TTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhc
Confidence            3457777777776432 2232      237888889999999999999999999999888764433     467888889


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                      .++++.+|..|+.+||++.  .+....     ..++.+..+|.++  +..+|++|+.++..++..     +|+.    . 
T Consensus       117 ~~~n~~vr~lAL~~L~~i~--~~~~~~-----~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~~-----~p~~----v-  177 (618)
T 1w63_A          117 NHSTQFVQGLALCTLGCMG--SSEMCR-----DLAGEVEKLLKTS--NSYLRKKAALCAVHVIRK-----VPEL----M-  177 (618)
T ss_dssp             SCSSSHHHHHHHHHHHHHC--CHHHHH-----HHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHH-----CGGG----G-
T ss_pred             CCCCHhHHHHHHHHHHhcC--CHHHHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH-----ChHH----H-
Confidence            9989999999999999995  233222     3467888889876  678999999999999863     3332    2 


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015496          306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  339 (405)
Q Consensus       306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~  339 (405)
                      .++++.+..+|...|+.++..|+.+|..+.....
T Consensus       178 ~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~  211 (618)
T 1w63_A          178 EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP  211 (618)
T ss_dssp             GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence            2688889999999999999999999999987543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.79  E-value=6.5e-05  Score=80.77  Aligned_cols=196  Identities=12%  Similarity=0.145  Sum_probs=131.1

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch-hHHHhcCCHHHHHHhcCC---------------CCHHHHHHH
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNH---------------PDTDIRKIS  194 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA-~~~~~~Ggi~~Lv~lL~s---------------~~~~Ir~~A  194 (405)
                      .+|...+..+.+.+.+.+.|..+++.+..++...... ..+. ...+|+++..|..               ....+|..+
T Consensus       498 ~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  576 (861)
T 2bpt_A          498 ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI  576 (861)
T ss_dssp             HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence            5566666777654433466777888888877654322 1111 1356777776642               246789999


Q ss_pred             HHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCcc
Q 015496          195 AWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE  273 (405)
Q Consensus       195 a~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~-~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~  273 (405)
                      +.+|+++++..+..-...+ ...++.++.++++.+. .++..++.++++++.........++. ..++.|...++++  +
T Consensus       577 ~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~~~--~  652 (861)
T 2bpt_A          577 LTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV--D  652 (861)
T ss_dssp             HHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT--T
T ss_pred             HHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHhccc--c
Confidence            9999999987553111111 2467888888887766 78999999999998765443333322 3678888888654  4


Q ss_pred             HHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcC
Q 015496          274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       274 ~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~al~aL~~L~~~  337 (405)
                      ..++..++.++.+++..    ..+...+.+  ..+++.+...+.++  |.++++.++.+++.++..
T Consensus       653 ~~vr~~a~~~l~~l~~~----~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~  712 (861)
T 2bpt_A          653 SPVSITAVGFIADISNS----LEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN  712 (861)
T ss_dssp             SHHHHHHHHHHHHHHHH----TGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----hchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence            56899999999999863    222222222  35777778888765  488999999999998853

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.79  E-value=0.00037  Score=65.30  Aligned_cols=149  Identities=14%  Similarity=0.200  Sum_probs=119.8

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  254 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f  254 (405)
                      -+..|+.+|...++.++.+|..+|..+-..-|.......=...++.++.+++++++.+..+|+.+|..++.+.|..-+.|
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y  113 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF  113 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence            35567778888899999999999999998765555555556789999999999999999999999999999988888877


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496          255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL  334 (405)
Q Consensus       255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L  334 (405)
                      ..  ....|..+++++  +.-++..|+-.+.-| .-    ..+       ..+++..+..++.+.|..++..+++++.++
T Consensus       114 ~K--l~~aL~dlik~~--~~il~~eaae~Lgkl-kv----~~~-------~~~V~~~l~sLl~Skd~~vK~agl~~L~ei  177 (265)
T 3b2a_A          114 LK--AAKTLVSLLESP--DDMMRIETIDVLSKL-QP----LED-------SKLVRTYINELVVSPDLYTKVAGFCLFLNM  177 (265)
T ss_dssp             HH--HHHHHHHHTTSC--CHHHHHHHHHHHHHC-CB----SCC-------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHhcCC--CchHHHHHHHHhCcC-Cc----ccc-------hHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            65  356788888866  455778888877776 10    111       235777888899999999999999999999


Q ss_pred             hcCCh
Q 015496          335 LQLRT  339 (405)
Q Consensus       335 ~~~~~  339 (405)
                      +..++
T Consensus       178 a~~S~  182 (265)
T 3b2a_A          178 LNSSA  182 (265)
T ss_dssp             GGGCS
T ss_pred             hcccC
Confidence            98654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.77  E-value=0.00074  Score=76.43  Aligned_cols=216  Identities=15%  Similarity=0.161  Sum_probs=142.6

Q ss_pred             hHHHHHHHHHHcCCC------C-HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC
Q 015496          113 RQMEIKELMEKLKTP------S-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH  185 (405)
Q Consensus       113 r~~~L~~a~~~~~~~------~-d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s  185 (405)
                      |+.-...+.+.+..+      . ....+...++.+.+  .+.+.|..|+..|..+++.... ..+.  ..++.|+..|.+
T Consensus        23 R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~~-~~~~--~i~~~Ll~~l~d   97 (1230)
T 1u6g_C           23 RFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVKE-YQVE--TIVDTLCTNMLS   97 (1230)
T ss_dssp             HHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCH-HHHH--HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCCH-HHHH--HHHHHHHHHhcC
Confidence            554445555544321      1 33667777888874  3678888999999998876643 2222  247778888888


Q ss_pred             CCHHHHHHHHHHHHHHhcCChHh------HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC
Q 015496          186 PDTDIRKISAWILGKASQNNPLV------QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA  258 (405)
Q Consensus       186 ~~~~Ir~~Aa~~Lg~~aqNN~~~------Q~~vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g  258 (405)
                      +++.+|..|+.+|+.++..-+..      +... -...+|.|+..+. +++..++..|+.+++.++...+.....+. ..
T Consensus        98 ~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~  175 (1230)
T 1u6g_C           98 DKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PS  175 (1230)
T ss_dssp             SSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HH
T ss_pred             CcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HH
Confidence            89999999999999999754432      1112 2357899999998 47788999999999999865433211111 23


Q ss_pred             cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc---------------cC-CCCcch---------------hHHh--
Q 015496          259 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE---------------NM-HKVEPP---------------LFRD--  305 (405)
Q Consensus       259 Gi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~---------------~~-~~~~~~---------------~l~~--  305 (405)
                      .++.|...+.++  +..+|..|+.++..++....+               .. ++..+.               .+..  
T Consensus       176 ll~~l~~~L~~~--~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l  253 (1230)
T 1u6g_C          176 ILTCLLPQLTSP--RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL  253 (1230)
T ss_dssp             HHHHHGGGGGCS--SHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC
T ss_pred             HHHHHHHHHcCC--cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            456777777765  567899999999888753100               00 001110               1111  


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      ..+++.+...+..++.++++.++.++..++..
T Consensus       254 ~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~  285 (1230)
T 1u6g_C          254 EKIIPLVVKFCNVDDDELREYCIQAFESFVRR  285 (1230)
T ss_dssp             TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            35677777778778888999999999888764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.69  E-value=0.0015  Score=69.28  Aligned_cols=167  Identities=16%  Similarity=0.035  Sum_probs=128.6

Q ss_pred             CCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHH
Q 015496          144 TLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM  222 (405)
Q Consensus       144 ~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll  222 (405)
                      ..+...|..++..+-++.- ..|.      .-|+..+++++.+++..+|..+--.+...+..+|+.-..     ++..+.
T Consensus        49 ~~~~~~k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~  117 (621)
T 2vgl_A           49 ALDGYSKKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIK  117 (621)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHH
Confidence            3467788888777776532 1221      247899999999999999999999999999988865433     356777


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh--cCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015496          223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL--GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP  300 (405)
Q Consensus       223 ~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL--~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~  300 (405)
                      +=+.++++-+|.-|+.+||++.  .+...+.     -++.+..++  .+.  ++.+|++|+.++..+...     +|+. 
T Consensus       118 kDl~~~n~~ir~lALr~L~~i~--~~e~~~~-----l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~-----~p~~-  182 (621)
T 2vgl_A          118 NDLASRNPTFMGLALHCIANVG--SREMAEA-----FAGEIPKILVAGDT--MDSVKQSAALCLLRLYRT-----SPDL-  182 (621)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHC--CHHHHHH-----HTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHH-----CGGG-
T ss_pred             HhcCCCCHHHHHHHHHHhhccC--CHHHHHH-----HHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHh-----Chhh-
Confidence            7888888999999999999993  3443332     357788888  543  788999999999999863     3322 


Q ss_pred             hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          301 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       301 ~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                        +...++++.+.++|...|+.++..|+.++..+....
T Consensus       183 --~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~  218 (621)
T 2vgl_A          183 --VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKN  218 (621)
T ss_dssp             --CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred             --cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhC
Confidence              222589999999999889999999999999998643

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=97.69  E-value=0.00084  Score=72.21  Aligned_cols=200  Identities=15%  Similarity=0.085  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch--hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL  207 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA--~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~  207 (405)
                      ..++...+..+.+++.+.+.+..|+..|..+++.+...  ........++.+..++.++++++|..|+++++.++...++
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~  250 (876)
T 1qgr_A          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence            34555566666665446788888999998877644311  1111112466777788888999999999999999988776


Q ss_pred             hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-----------------HHHHHh---cCcHHHHHHhh
Q 015496          208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----------------QEMFYV---EAGDLMLQDIL  267 (405)
Q Consensus       208 ~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~-----------------~~~f~~---~gGi~~L~~lL  267 (405)
                      .-...+....++.++..+.+.++.++..|+..++++++.....                 ...+..   ...++.+...+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l  330 (876)
T 1qgr_A          251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (876)
T ss_dssp             GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence            5444444478899999888888899999999999887642100                 000100   12355666666


Q ss_pred             cCC-----CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          268 GNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       268 ~s~-----~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                      ...     ..+.++|+-|..++..++..-    .+    .+. ..+++.+...+.+.+..+++.++.+++.++.+.
T Consensus       331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~----~~----~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~  397 (876)
T 1qgr_A          331 TKQDENDDDDDWNPCKAAGVCLMLLATCC----ED----DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP  397 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHH----GG----GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHC----cH----hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC
Confidence            421     124467888999999998531    11    122 256777788888889999999999999998754

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.67  E-value=0.0007  Score=62.34  Aligned_cols=147  Identities=8%  Similarity=0.102  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHhh-cCCCCHHHHHHHHHHHHHccCCCCchhHHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015496          130 AQLIQIAIDDLN-NSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  206 (405)
Q Consensus       130 ~~lmk~al~~L~-~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~--~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~  206 (405)
                      .+++......+. +.  ....+..|+..+..++.....  .|..  ...+|+++..+..+++.+|..|+.+|.+++.+.+
T Consensus        55 ~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~--~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~  130 (242)
T 2qk2_A           55 GALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAK--RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS  130 (242)
T ss_dssp             HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence            355555556664 43  567788888888888754422  2222  2368899999999999999999999999998654


Q ss_pred             HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-hhh-HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015496          207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN-LAG-QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV  284 (405)
Q Consensus       207 ~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~-~~~-~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lL  284 (405)
                       ..      ..+|.|+..+++.++.+|..++..|+.++..+ +.. ....+ ..-++.|..++.+.  +.++|..|..++
T Consensus       131 -~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~--~~~VR~~A~~~l  200 (242)
T 2qk2_A          131 -LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEP--DPTVRDSSAEAL  200 (242)
T ss_dssp             -HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSS--CHHHHHHHHHHH
T ss_pred             -HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHH
Confidence             21      35788999999988999999999999977665 321 12222 25678999999875  677999999999


Q ss_pred             HHHhhc
Q 015496          285 GDLAKC  290 (405)
Q Consensus       285 s~L~~~  290 (405)
                      ..++..
T Consensus       201 ~~l~~~  206 (242)
T 2qk2_A          201 GTLIKL  206 (242)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999853

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.46  E-value=0.013  Score=58.19  Aligned_cols=187  Identities=11%  Similarity=0.076  Sum_probs=132.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015496          127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP  206 (405)
Q Consensus       127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~  206 (405)
                      ++....++++ ..++++..++.-+..++..+.++.-.-+.=....-...+..+++++.+++..+|...--.+-+++.-++
T Consensus        22 ~~k~~v~qe~-r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~  100 (355)
T 3tjz_B           22 LEKSAVLQEA-RVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE  100 (355)
T ss_dssp             CCHHHHHHHG-GGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSS
T ss_pred             chHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHH
Confidence            4445556663 566666666554455666666654332211111112346777889999999999999999988887633


Q ss_pred             HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496          207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD  286 (405)
Q Consensus       207 ~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~  286 (405)
                         +.+   =++..|.+=++++++-+|..|+.++|++.-  +...+.     ..+.+.++|.+.  ++.+|++|+.+...
T Consensus       101 ---e~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~--~pyVRk~A~l~~~k  165 (355)
T 3tjz_B          101 ---DVI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDK--VPSVSSSALVSSLH  165 (355)
T ss_dssp             ---CGG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHH
T ss_pred             ---HHH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCC--CHHHHHHHHHHHHH
Confidence               223   257788888888899999999999999952  333333     346788888886  67899999999999


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015496          287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT  339 (405)
Q Consensus       287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~  339 (405)
                      |+.     ..|    .+++ +|+..+-+++...++-++-+|+.+|..+...+.
T Consensus       166 L~~-----~~p----e~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~  208 (355)
T 3tjz_B          166 LLK-----CSF----DVVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR  208 (355)
T ss_dssp             HTT-----TCH----HHHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred             Hhc-----cCH----HHHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence            984     233    2443 699999999999999999999999999887543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.34  E-value=0.03  Score=50.81  Aligned_cols=188  Identities=13%  Similarity=0.181  Sum_probs=132.3

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhH
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQ  209 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q  209 (405)
                      +.+++.+..|.+.-.+  .+..|+..+..+.+....+-.    -.+..|+-++ ++..-++-..-+.++|.++.-||+.-
T Consensus        32 ~~l~~lI~~LDDDlwt--V~kNAl~vi~~i~~~~~el~e----pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           32 SVLKKLIELLDDDLWT--VVKNAISIIMVIAKTREDLYE----PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             HHHHHHHHHTTCSCHH--HHHHHHHHHHHHHTTCGGGHH----HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHhccHHHH--HHHhHHHHHHHHHHHhHHHHH----HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            3445555555554322  355677777776665532111    0234455555 36778887888999999999999766


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      .     +.+|.|..-..-+++..+..--|+|.-|.|.||.....+     +.-+..++.+++..  =+.-|+.+++.+..
T Consensus       106 ~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~--Dkl~aLnFi~alGe  173 (253)
T 2db0_A          106 K-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNRE--DKLTALNFIEAMGE  173 (253)
T ss_dssp             H-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHH--HHHHHHHHHHTCCT
T ss_pred             H-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChH--HHHHHHHHHHHHhc
Confidence            5     456999999998899999999999999999999765443     45566778876322  34467777776643


Q ss_pred             chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          290 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK  346 (405)
Q Consensus       290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~  346 (405)
                      ++        ...+  .-++|.|..+|..+|.-++.-|..+|.+++..++.-|..+.
T Consensus       174 n~--------~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~  220 (253)
T 2db0_A          174 NS--------FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI  220 (253)
T ss_dssp             TT--------HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             cC--------cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH
Confidence            21        1122  46899999999999999999999999999988766555554

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.0058  Score=57.25  Aligned_cols=174  Identities=9%  Similarity=0.104  Sum_probs=117.1

Q ss_pred             HhHHHHHHHHH-HcCC-------CCH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chh-HHHhcCCHHHH
Q 015496          112 KRQMEIKELME-KLKT-------PSD-AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NAN-DLSKLGGLSVL  179 (405)
Q Consensus       112 ~r~~~L~~a~~-~~~~-------~~d-~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~-~~~~~Ggi~~L  179 (405)
                      +|++-+..+.. .+.+       ..+ .+++......+.+. .....+..|+..+..+++...  .-. .+.. -.+|++
T Consensus        32 eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D-~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~l  109 (249)
T 2qk1_A           32 DRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKD-ANIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTPL  109 (249)
T ss_dssp             HHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHHH
Confidence            36666665555 3321       122 35566666666322 245667788888888775432  111 2222 258899


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH---Hh
Q 015496          180 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF---YV  256 (405)
Q Consensus       180 v~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f---~~  256 (405)
                      +..+....+.||..|..++-+++.+-+.....-.=...++.|+..+++.+..+|..++..|+.++...+..-..|   +.
T Consensus       110 l~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~  189 (249)
T 2qk1_A          110 LDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLK  189 (249)
T ss_dssp             HHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence            999998899999999999999987542110000001267889999999889999999999999998765421232   22


Q ss_pred             cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          257 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       257 ~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      -.-++.|..++.+.  +..+|..|..++..++.
T Consensus       190 ~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          190 DEVVPIVIQIVNDT--QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             TTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence            46789999999875  67799999999999985

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.21  E-value=0.0087  Score=58.76  Aligned_cols=153  Identities=14%  Similarity=0.093  Sum_probs=118.0

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-c
Q 015496          179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-E  257 (405)
Q Consensus       179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~-~  257 (405)
                      ++.-|.+.+..-+..|..-|..+.|.....-..|++.+|+..|+++..+.+.+....++.|++++.- +..+.+.+++ .
T Consensus       123 iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~~  201 (339)
T 3dad_A          123 ILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAHS  201 (339)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHCH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCCH
Confidence            4444556677778899999999777767777889999999999999999888999999999999975 6677777775 3


Q ss_pred             CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh----------CCcHHHHHHhcc---CCChHHH
Q 015496          258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD----------RFFLKSVVDLTA---SADLDLQ  324 (405)
Q Consensus       258 gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~----------~g~l~~Lv~LL~---~~D~~v~  324 (405)
                      ..+..|..++.+.  +..+.+.|+.+|-.++..     ++.....+.+          ..-...|+.+|.   +.|.+++
T Consensus       202 ~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~-----se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq  274 (339)
T 3dad_A          202 DTIQWLYTLCASL--SRLVVKTALKLLLVFVEY-----SENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL  274 (339)
T ss_dssp             HHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred             HHHHHHHHHHcCc--cHHHHHHHHHHHHHHHcc-----CcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence            5788888888864  678889999999999863     2222222221          124778999997   6799999


Q ss_pred             HHHHHHHHHHhcCCh
Q 015496          325 EKALAAIKNLLQLRT  339 (405)
Q Consensus       325 E~al~aL~~L~~~~~  339 (405)
                      .+|+..|-.+....+
T Consensus       275 ~~amtLIN~lL~~ap  289 (339)
T 3dad_A          275 VYTVTLINKTLAALP  289 (339)
T ss_dssp             HHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999988887776543

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.15  E-value=0.0052  Score=65.14  Aligned_cols=129  Identities=12%  Similarity=0.125  Sum_probs=99.3

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      +.+.|..+.-.+..+.+.-   .++.-+ .+..+.+-|+++++-+|..|..+|+++.  +|+.-+     ..+|.+.+++
T Consensus        87 ~~~~Krl~YL~l~~~~~~~---~e~~~L-~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l  155 (621)
T 2vgl_A           87 RYTEKQIGYLFISVLVNSN---SELIRL-INNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKIL  155 (621)
T ss_dssp             CHHHHHHHHHHHHHSCCCC---HHHHHH-HHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHccCC---cHHHHH-HHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHH
Confidence            5678887877788776442   222211 3556667788999999999999999996  455444     3568899999


Q ss_pred             --cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          226 --KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       226 --~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                        .+.++-||.+|+.|+..+.+.+|....   ..+.++.|..+|.+.  +..++..|+.++..++..
T Consensus       156 ~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~d~--d~~V~~~a~~~l~~i~~~  217 (621)
T 2vgl_A          156 VAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLNDQ--HLGVVTAATSLITTLAQK  217 (621)
T ss_dssp             HCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTTCS--CHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhCCC--CccHHHHHHHHHHHHHHh
Confidence              778899999999999999998876443   136789999999765  678999999999999863

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.021  Score=53.69  Aligned_cols=180  Identities=12%  Similarity=0.034  Sum_probs=117.2

Q ss_pred             CHHHHHHHHHHHHHccCCCCc---hh-HHHhcCCHHH-HHHhcCCCCHHHHHHHHHHHHHHhcCChH-----hHHHHHHc
Q 015496          146 SLEDSQRALQELLILVEPIDN---AN-DLSKLGGLSV-LVGQLNHPDTDIRKISAWILGKASQNNPL-----VQKQVLEL  215 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDn---A~-~~~~~Ggi~~-Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~-----~Q~~vle~  215 (405)
                      .=..|..|++.|..++.....   .+ .+...+-+.. +-..+...|..++..|+.+|..++..-..     ......-.
T Consensus        22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~  101 (278)
T 4ffb_C           22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS  101 (278)
T ss_dssp             SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence            346788899988887754321   11 1222344444 44678889999999999999998864221     11111223


Q ss_pred             CcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015496          216 GALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN  294 (405)
Q Consensus       216 G~lp~Ll~-LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~  294 (405)
                      ..+|.|+. .+.+....++..|+.++..++....+...      .++.+...+++.  +++++..++..|..+....   
T Consensus       102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~K--npkv~~~~l~~l~~~l~~f---  170 (278)
T 4ffb_C          102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKK--LPKLIAAAANCVYELMAAF---  170 (278)
T ss_dssp             HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCS--CHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHh---
Confidence            56788885 47787888898898888887754332211      135666677765  6889999999999887532   


Q ss_pred             CCCCcch-hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          295 MHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       295 ~~~~~~~-~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                       ...... ...-..+++.+..+|.+.|.+||+.|..++..+...
T Consensus       171 -g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          171 -GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             -TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             -CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence             111110 111123566788889999999999999999988764

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=96.75  E-value=0.066  Score=48.63  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=106.8

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  254 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f  254 (405)
                      .+|.+..-+.-.++.+|..-..+|+.++.+||..-..+     +.-+..++.+++..-+..|+.-|+.+--+++....  
T Consensus       108 vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~--  180 (253)
T 2db0_A          108 MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN--  180 (253)
T ss_dssp             HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG--
T ss_pred             hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHhccCccccC--
Confidence            45666666677899999999999999999999887655     46788999988876788889888888666554333  


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015496          255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL  334 (405)
Q Consensus       255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L  334 (405)
                         .-++-|..+|.++  +.-+|..|+-++.+|+.     .+|..++      ++..-++=++..+..++.++-.+|+.|
T Consensus       181 ---PfLprL~aLL~D~--deiVRaSaVEtL~~lA~-----~npklRk------ii~~kl~e~~D~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          181 ---PFLPRIINLLHDG--DEIVRASAVEALVHLAT-----LNDKLRK------VVIKRLEELNDTSSLVNKTVKEGISRL  244 (253)
T ss_dssp             ---GGHHHHHGGGGCS--SHHHHHHHHHHHHHHHT-----SCHHHHH------HHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             ---cchHHHHHHHcCc--chhhhHHHHHHHHHHHH-----cCHHHHH------HHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence               3468999999987  56689999999999995     3443222      334445556777788999999898887


Q ss_pred             hcC
Q 015496          335 LQL  337 (405)
Q Consensus       335 ~~~  337 (405)
                      +-.
T Consensus       245 ~l~  247 (253)
T 2db0_A          245 LLL  247 (253)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.38  E-value=0.12  Score=57.39  Aligned_cols=152  Identities=14%  Similarity=0.129  Sum_probs=99.8

Q ss_pred             CHHHHHHhcC-CCCHHHHHHHHHHHHHHhc--CChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhh
Q 015496          175 GLSVLVGQLN-HPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAG  250 (405)
Q Consensus       175 gi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aq--NN~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~  250 (405)
                      .++.+++.|. +.++-+|..|+.++|-+.-  +|+         .+|..|++.+.+ .++.+|..|+.+|+-+.-+.+..
T Consensus       542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~  612 (963)
T 4ady_A          542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT  612 (963)
T ss_dssp             GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH
Confidence            4666777664 5677788877777764443  343         235666666544 45788999999999876555432


Q ss_pred             HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015496          251 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA  330 (405)
Q Consensus       251 ~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~a  330 (405)
                               ++.++..|... .+.-+|+-|++++.-++.+     ++       ...++..|..++...|.+|+..|+.+
T Consensus       613 ---------v~rlv~~L~~~-~d~~VR~gAalALGli~aG-----n~-------~~~aid~L~~L~~D~d~~Vrq~Ai~A  670 (963)
T 4ady_A          613 ---------VPRIVQLLSKS-HNAHVRCGTAFALGIACAG-----KG-------LQSAIDVLDPLTKDPVDFVRQAAMIA  670 (963)
T ss_dssp             ---------HHHHTTTGGGC-SCHHHHHHHHHHHHHHTSS-----SC-------CHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhc-CCHHHHHHHHHHHHHhccC-----CC-------cHHHHHHHHHHccCCCHHHHHHHHHH
Confidence                     34445544433 3678999999999998743     22       12356677777888899999999999


Q ss_pred             HHHHhcCChhhHHHHHhcCCchHHHHHHHHHHHHhh
Q 015496          331 IKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVM  366 (405)
Q Consensus       331 L~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~~~~l~  366 (405)
                      |+.+..+..+         ...|++..++.++....
T Consensus       671 LG~Ig~gtnn---------a~~~rva~~l~~L~~~~  697 (963)
T 4ady_A          671 LSMILIQQTE---------KLNPQVADINKNFLSVI  697 (963)
T ss_dssp             HHHHSTTCCT---------TTCTTHHHHHHHHHHHH
T ss_pred             HHHHhcCCcc---------ccchHHHHHHHHHHHHH
Confidence            9999876433         22234555555554444

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.93  E-value=0.46  Score=47.31  Aligned_cols=168  Identities=17%  Similarity=0.118  Sum_probs=116.0

Q ss_pred             HHHHHHHHHcc--CCCCchhHHHhcCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-C
Q 015496          151 QRALQELLILV--EPIDNANDLSKLGGLSVLVGQLN-----------HPDTDIRKISAWILGKASQNNPLVQKQVLEL-G  216 (405)
Q Consensus       151 ~~AL~~L~~Lv--e~iDnA~~~~~~Ggi~~Lv~lL~-----------s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-G  216 (405)
                      ...+..|+-.+  .+++.-..|+ .+|+..|+..|.           ..+..++.....||..+. ||..--+.++++ .
T Consensus        85 ~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~  162 (383)
T 3eg5_B           85 LSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEE  162 (383)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChH
Confidence            34566666644  4568888998 889999999884           124578889999999888 667677777765 7


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hh-HHHHHh----------cCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015496          217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFYV----------EAGDLMLQDILGNSSFEIRLHRKAVSLV  284 (405)
Q Consensus       217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~-~~-~~~f~~----------~gGi~~L~~lL~s~~~~~kl~~kA~~lL  284 (405)
                      ++..|...+.+..+.++..|+--|+.+|--.. .+ ...+++          ..-+..++..|.+. .+..++..+..+|
T Consensus       163 ~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~~~~~m~lI  241 (383)
T 3eg5_B          163 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLI  241 (383)
T ss_dssp             HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHHHHHHHHHH
Confidence            88999999999888888888877777665432 22 333321          23478888989875 4677888899999


Q ss_pred             HHHhhchhccCCC----CcchhHHhCCcHHHHHHhccCCChHHH
Q 015496          285 GDLAKCQLENMHK----VEPPLFRDRFFLKSVVDLTASADLDLQ  324 (405)
Q Consensus       285 s~L~~~~~~~~~~----~~~~~l~~~g~l~~Lv~LL~~~D~~v~  324 (405)
                      ..++.+.   ++-    ..+..|...|+.+.+-.+=...+.++.
T Consensus       242 N~li~~~---~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~  282 (383)
T 3eg5_B          242 NALITPA---EELDFRVHIRSELMRLGLHQVLQELREIENEDMK  282 (383)
T ss_dssp             HHHHTTC---CCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHH
T ss_pred             HHHHcCC---CCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHH
Confidence            9988531   111    133456677888877764333454443

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=95.87  E-value=0.77  Score=45.32  Aligned_cols=157  Identities=8%  Similarity=0.020  Sum_probs=105.1

Q ss_pred             HhHHHHHHHHHHcC-CCC-HH----HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC
Q 015496          112 KRQMEIKELMEKLK-TPS-DA----QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH  185 (405)
Q Consensus       112 ~r~~~L~~a~~~~~-~~~-d~----~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s  185 (405)
                      +.++-+++++-.+. |.+ ..    .+.-..++.+.+.  +.+.|.-..--+..+....+.+-     =....|.+-+++
T Consensus        43 kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~--d~~lKrLvYLyl~~~~~~~~e~i-----Lv~Nsl~kDl~~  115 (355)
T 3tjz_B           43 KCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSN--DPTLRRMCYLTIKEMSCIAEDVI-----IVTSSLTKDMTG  115 (355)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCC--CHHHHHHHHHHHHHHTTTSSCGG-----GGHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCCHHHHH-----HHHHHHHhhcCC
Confidence            45667777765542 322 11    1222223344443  56677666666666554433221     146677788889


Q ss_pred             CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHH
Q 015496          186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD  265 (405)
Q Consensus       186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~  265 (405)
                      +++-+|..|.++++++..  |+.-+.     ..+.+-+.+.+.++-||.+|+.+...+++.+|+..+     +.++-+..
T Consensus       116 ~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~  183 (355)
T 3tjz_B          116 KEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQE  183 (355)
T ss_dssp             SCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHH
T ss_pred             CcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHH
Confidence            999999999999999985  333332     456788888888999999999999999988887544     45677788


Q ss_pred             hhcCCCccHHHHHHHHHHHHHHhh
Q 015496          266 ILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       266 lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      ++.+.  +.-++-.|+.++..++.
T Consensus       184 ll~d~--n~~V~~~Al~lL~ei~~  205 (355)
T 3tjz_B          184 AASSD--NIMVQYHALGLLYHVRK  205 (355)
T ss_dssp             HTTCS--SHHHHHHHHHHHHHHHT
T ss_pred             HhcCC--CccHHHHHHHHHHHHHh
Confidence            88765  56677888888888774

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=95.59  E-value=2.1  Score=42.54  Aligned_cols=241  Identities=15%  Similarity=0.131  Sum_probs=129.9

Q ss_pred             hccCCCCHHHHHHhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHH
Q 015496          100 QDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVL  179 (405)
Q Consensus       100 ~~~~~~s~e~l~~r~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~L  179 (405)
                      +...+||++++.   +-+++.|+.++.+.+..      +.+.+.  +.+.|-.-+..-..- .... ...-....--.-.
T Consensus         5 ~~~~~~se~ev~---~~F~~mL~~mnl~~ek~------~~l~~~--~~e~Kw~mi~~~~~~-~~~~-~~~~~~~~sP~~y   71 (383)
T 3eg5_B            5 QSLQDISDEQVL---VLFEQMLVDMNLNEEKQ------QPLREK--DIVIKREMVSQYLHT-SKAG-MNQKESSRSAMMY   71 (383)
T ss_dssp             ----------CC---HHHHHHHHHTTCCHHHH------HHHHSS--CHHHHHHHHHHHHHH-C----------CCCHHHH
T ss_pred             hhcccCCHHHHH---HHHHHHHHHcCCCHHHH------HHHHhC--CHHHHHHHHHHHHHH-hhhc-cccccCCCCHHHH
Confidence            356778887652   33477888888765433      333333  445553322211100 0000 0000111222234


Q ss_pred             HHhcCCCC-HHHHHHHHHHHHHHhcCC--hHhHHHHHHcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhc
Q 015496          180 VGQLNHPD-TDIRKISAWILGKASQNN--PLVQKQVLELGALSKLMKMVKS-----------SFVEEAVKALYTVSSLIR  245 (405)
Q Consensus       180 v~lL~s~~-~~Ir~~Aa~~Lg~~aqNN--~~~Q~~vle~G~lp~Ll~LL~s-----------~~~~v~~kAl~ALS~lir  245 (405)
                      +..|.+.. .+-......-|...-.++  .-++ .|. .+|+..|+.+|..           .+......++.+|.++. 
T Consensus        72 i~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~-~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-  148 (383)
T 3eg5_B           72 IQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQ-TFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-  148 (383)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHH-HHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-
T ss_pred             HHHHHhcccchhHHHHHHHHHHHHhhCccHHHH-HHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-
Confidence            55554432 111111122222222333  3333 344 7889999988852           11244567788888776 


Q ss_pred             CChhhHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhcc
Q 015496          246 NNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTA  317 (405)
Q Consensus       246 ~~~~~~~~f~~~-gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~-~~~~~~~l------~~~g~l~~Lv~LL~  317 (405)
                      ++..+.+.++.+ +++..|..+|.++  ..+++.-|+-+++.+|....+.. .+...+++      .+..-...+++.|.
T Consensus       149 N~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          149 NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             SSHHHHHHHHTCSSHHHHHHHTCCTT--SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             cchhhHHHHHcChHHHHHHHHHhCCC--chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            667788888774 6789999999876  67889999999999996410000 11111111      22344566888888


Q ss_pred             C-CChHHHHHHHHHHHHHhcCChhh------HHHHHhcCCchHHHHHHH
Q 015496          318 S-ADLDLQEKALAAIKNLLQLRTTE------ALVLKDFCGLDTALERLR  359 (405)
Q Consensus       318 ~-~D~~v~E~al~aL~~L~~~~~~~------~~~v~~~~Gl~~~L~~L~  359 (405)
                      . .+.+++..++..+-.++..+++.      |..+. .+|+.+.+.+|+
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~-~~Gl~~il~~lr  274 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-RLGLHQVLQELR  274 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HTTHHHHHHHHT
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCChHHHHHHHh
Confidence            7 58899999998888888876542      45566 899999999887

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.57  E-value=0.51  Score=44.79  Aligned_cols=171  Identities=12%  Similarity=0.023  Sum_probs=110.4

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHH-HHHhcCCCCHHHHHHHHHHHHHHhcC----ChHhHHHHHHcCcHHH
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSV-LVGQLNHPDTDIRKISAWILGKASQN----NPLVQKQVLELGALSK  220 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~-Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN----N~~~Q~~vle~G~lp~  220 (405)
                      +-..+..|++.|...+++.. ...+....++-. +.--+.++|+.+-..+..+|..+..-    +......-. .-.+|.
T Consensus        59 d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~  136 (266)
T 2of3_A           59 DFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPY  136 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHH
Confidence            45778888888888765421 111222222211 11122367899999999988887532    111111100 136799


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015496          221 LMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP  300 (405)
Q Consensus       221 Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~  300 (405)
                      |+.-+.++.+.+|.++-..+-.+..-+++.       ..++.+...+++.  +.|.|..++..+.++....    ...  
T Consensus       137 LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~----G~~--  201 (266)
T 2of3_A          137 LLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSK--NARQRSECLLVIEYYITNA----GIS--  201 (266)
T ss_dssp             HHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH----CSG--
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccC--CHHHHHHHHHHHHHHHHhc----CCC--
Confidence            999998888888876655554443323321       1346677788876  5889999999999998542    111  


Q ss_pred             hhHHhCCcH---HHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          301 PLFRDRFFL---KSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       301 ~~l~~~g~l---~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                          ....+   +.+..++...|..+|+.|++++..+...
T Consensus       202 ----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          202 ----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             ----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             ----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence                13467   9999999999999999999999977654

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.53  E-value=0.25  Score=45.63  Aligned_cols=155  Identities=17%  Similarity=0.100  Sum_probs=101.6

Q ss_pred             CCCCchhHHHhcCCHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcHHHHHHhhcCCC
Q 015496          162 EPIDNANDLSKLGGLSVLVGQLNH----P-------DTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSF  229 (405)
Q Consensus       162 e~iDnA~~~~~~Ggi~~Lv~lL~s----~-------~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-G~lp~Ll~LL~s~~  229 (405)
                      .+++....| ..||+..|+.+|..    +       +..++..+..||..+. ||..--+.++.+ +++..|...|.++.
T Consensus        32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~~  109 (233)
T 2f31_A           32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV  109 (233)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTTS
T ss_pred             CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCCC
Confidence            356778888 57899999988752    1       4577889999998887 666666777764 68899999998888


Q ss_pred             HHHHHHHHHHHHHHhcCCh-hh-HHHHHh----------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015496          230 VEEAVKALYTVSSLIRNNL-AG-QEMFYV----------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK  297 (405)
Q Consensus       230 ~~v~~kAl~ALS~lir~~~-~~-~~~f~~----------~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~  297 (405)
                      ..++..++--|+.+|--.. .+ ...+++          ..-+..+++.+++. .+..++..+..+|..++.+.   .+.
T Consensus       110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~~~m~lIN~li~~~---~dl  185 (233)
T 2f31_A          110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITPA---EEL  185 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHHHTTC---CCH
T ss_pred             chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC-ChHHHHHHHHHHHHHHHCCC---CCH
Confidence            8888877766665554332 13 333321          22456778888754 36778888888888888531   111


Q ss_pred             ----CcchhHHhCCcHHHHHHhccCCChH
Q 015496          298 ----VEPPLFRDRFFLKSVVDLTASADLD  322 (405)
Q Consensus       298 ----~~~~~l~~~g~l~~Lv~LL~~~D~~  322 (405)
                          ..+..|...|+.+.+-.+=...+++
T Consensus       186 ~~R~~lR~ef~~~Gl~~il~~l~~~~~~~  214 (233)
T 2f31_A          186 DFRVHIRSELMRLGLHQVLQELREIENED  214 (233)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHCChHHHHHHHhccCCHH
Confidence                1234455667766665543333333

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.04  E-value=0.7  Score=51.51  Aligned_cols=184  Identities=15%  Similarity=0.169  Sum_probs=123.0

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CCh
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNP  206 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aq--NN~  206 (405)
                      .++...++.+.+.. .=..|..||+-+..+++..-  .+..|-  ..+|.+-.++....++|+..|..++..+|+  .|.
T Consensus       133 ~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~  209 (986)
T 2iw3_A          133 ALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAAKDQVALRMP--ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK  209 (986)
T ss_dssp             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT
T ss_pred             HHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhHHHHHHhcc--chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc
Confidence            34445555554432 34679999999999987541  122222  346777778888899999999999999987  455


Q ss_pred             HhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC---ChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496          207 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN---NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL  283 (405)
Q Consensus       207 ~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~---~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~l  283 (405)
                      ++.      ..+|.|++.+.+++.  --+++..||+..--   ..+....     -+|+|.+.|...  ...++|+++-.
T Consensus       210 d~~------~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~-----~~p~l~r~l~~~--~~~~~r~~~~~  274 (986)
T 2iw3_A          210 DIE------RFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI-----MVPLLSRGLNER--ETGIKRKSAVI  274 (986)
T ss_dssp             TTG------GGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH-----HHHHHHHHHTSS--SHHHHHHHHHH
T ss_pred             chh------hhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH-----HHHHHHhhhccC--cchhheeeEEE
Confidence            544      468999999988753  34578888874322   2222222     257778888765  44578999999


Q ss_pred             HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhc
Q 015496          284 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       284 Ls~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~~  336 (405)
                      +-|||.=-   .+|.....|. ..++|.|-+.... .|+++||.+-+|+..|..
T Consensus       275 ~~n~~~lv---~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          275 IDNMCKLV---EDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             HHHHHTTC---CCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred             Ecchhhhc---CCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence            99999621   2332222222 3566666665544 599999999999999853

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=94.96  E-value=1.8  Score=44.25  Aligned_cols=217  Identities=12%  Similarity=0.062  Sum_probs=123.8

Q ss_pred             HHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC----CchhHHHhcCCHH--HHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015496          132 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLS--VLVGQLNHPDTDIRKISAWILGKASQNN  205 (405)
Q Consensus       132 lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i----DnA~~~~~~Ggi~--~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN  205 (405)
                      ..+-.+..+.... ..+-..-.|--+.+++...    ..+.-|.+.....  ++-.++..++.-..-.|+.+++-+++++
T Consensus        78 ~~~~~l~lL~~~~-~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           78 TLIPLIHLLSTSD-NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             THHHHHHHHHSCC-CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhhcC-hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            3455666666532 4454444555555665442    2234455543322  2333455555666677777777777766


Q ss_pred             hHhHHHHHHcCcHH--HHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCc--HHHHHHhhc----CC------
Q 015496          206 PLVQKQVLELGALS--KLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILG----NS------  270 (405)
Q Consensus       206 ~~~Q~~vle~G~lp--~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG--i~~L~~lL~----s~------  270 (405)
                      +...+..-  ..+.  -++..|.+. +...+--++.+++.++|. +..+..|.+++|  ++++..+++    +.      
T Consensus       157 ~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~  233 (480)
T 1ho8_A          157 LHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV  233 (480)
T ss_dssp             TCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred             CccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence            55333221  1122  355556553 344455788899999884 677888988766  455544332    11      


Q ss_pred             -----CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcH--HHHHHhccCC-ChHHHHHHHHHHHHHhcCChh--
Q 015496          271 -----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL--KSVVDLTASA-DLDLQEKALAAIKNLLQLRTT--  340 (405)
Q Consensus       271 -----~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l--~~Lv~LL~~~-D~~v~E~al~aL~~L~~~~~~--  340 (405)
                           +....++-.+++++--|..      +++..+.+...++.  ..|+++++.. ...+...++.++.||+..+..  
T Consensus       234 ~~~~~~~~~Ql~Y~~ll~iWlLSF------~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~  307 (480)
T 1ho8_A          234 ATNSNHLGIQLQYHSLLLIWLLTF------NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH  307 (480)
T ss_dssp             -----CCHHHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH
T ss_pred             cccCCCccHHHHHHHHHHHHHHHc------CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhh
Confidence                 1135567777877777765      33455566666644  5677767653 567888888899999976421  


Q ss_pred             ---hHHHHHhcCCchHHHHHHH
Q 015496          341 ---EALVLKDFCGLDTALERLR  359 (405)
Q Consensus       341 ---~~~~v~~~~Gl~~~L~~L~  359 (405)
                         ..+.+. .+++++.+..|.
T Consensus       308 ~~~~~~~~~-~~~~l~~l~~L~  328 (480)
T 1ho8_A          308 KKVIKQLLL-LGNALPTVQSLS  328 (480)
T ss_dssp             HHHHHHHHH-HHCHHHHHHHHH
T ss_pred             hhHHHHHHH-HccchHHHHHHh
Confidence               122333 344455555554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.92  E-value=0.27  Score=54.49  Aligned_cols=137  Identities=11%  Similarity=0.061  Sum_probs=95.1

Q ss_pred             HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496          176 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEM  253 (405)
Q Consensus       176 i~~Lv~lL-~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL-~s~~~~v~~kAl~ALS~lir~~~~~~~~  253 (405)
                      +..|+..+ ++.+..+|..|+..||-++.++|         ..++.++.+| ++.++.+|..|.+|||-+..+++. .  
T Consensus       579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-~--  646 (963)
T 4ady_A          579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-Q--  646 (963)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-H--
T ss_pred             HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-H--
Confidence            44455544 46788999999999999988776         3467788755 456788999999999999877652 1  


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHH
Q 015496          254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAI  331 (405)
Q Consensus       254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~--~D~~v~E~al~aL  331 (405)
                          ..++.|..+.++.  +..+++.|+.++.-+..+.    ++...+.+  ..+++.|......  .|...+=.+..|.
T Consensus       647 ----~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gt----nna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAq  714 (963)
T 4ady_A          647 ----SAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQ----TEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQ  714 (963)
T ss_dssp             ----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTC----CTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCC----ccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence                2457788887765  6678999999999987542    22222233  2355667776643  4666776666666


Q ss_pred             HHHhc
Q 015496          332 KNLLQ  336 (405)
Q Consensus       332 ~~L~~  336 (405)
                      +-+-.
T Consensus       715 Gll~a  719 (963)
T 4ady_A          715 GIMNA  719 (963)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            65543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.86  E-value=0.47  Score=44.82  Aligned_cols=207  Identities=15%  Similarity=0.109  Sum_probs=132.7

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhc-CCHHHHHH-------hcCCCC-----HHHHHHHHH
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKL-GGLSVLVG-------QLNHPD-----TDIRKISAW  196 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~~~~~-Ggi~~Lv~-------lL~s~~-----~~Ir~~Aa~  196 (405)
                      +.|.+.+..|.++    +.|+.|+.+|..--|+. |.|--+-.. |-+..|++       .|+.+.     ..--+.|..
T Consensus         3 ~~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa   78 (268)
T 2fv2_A            3 EKIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA   78 (268)
T ss_dssp             HHHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence            3445555666655    45899999998877765 445555444 55556653       222211     122355555


Q ss_pred             HHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhhHHHHHhcCcHHHHHHhhcCC
Q 015496          197 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNS  270 (405)
Q Consensus       197 ~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~-----~~v~~kAl~ALS~lir~~-~~~~~~f~~~gGi~~L~~lL~s~  270 (405)
                      .+-.+|+ +|+.+..|++.+..-.|...|+..+     +-+|-.++..||++++.. ++....+.+.+.++...+.+..+
T Consensus        79 LlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G  157 (268)
T 2fv2_A           79 LLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG  157 (268)
T ss_dssp             HHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred             HHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence            6666775 7999999999987666667776544     346889999999999874 55566667889999999999887


Q ss_pred             CccHHHHHHHHHHHHHHhhch--hccCCCCcchhHHh-CCcHHHHHHh-ccCCChHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          271 SFEIRLHRKAVSLVGDLAKCQ--LENMHKVEPPLFRD-RFFLKSVVDL-TASADLDLQEKALAAIKNLLQLRTTEALVLK  346 (405)
Q Consensus       271 ~~~~kl~~kA~~lLs~L~~~~--~~~~~~~~~~~l~~-~g~l~~Lv~L-L~~~D~~v~E~al~aL~~L~~~~~~~~~~v~  346 (405)
                        +.--|.-|.|.+.-+....  +.-. =...+.|.. ..++..++.- ...+++.+..++.++-..|++++ ..+..++
T Consensus       158 --selSKtvAtfIlqKIL~dd~GL~Yi-C~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~-rar~aL~  233 (268)
T 2fv2_A          158 --SELSKTVATFILQKILLDDTGLAYI-CQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP-RAREALR  233 (268)
T ss_dssp             --CHHHHHHHHHHHHHHHHSHHHHHHH-TSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH-HHHHHHH
T ss_pred             --cHHHHHHHHHHHHHHhccchhHHHH-HccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH-HHHHHHH
Confidence              4456888999988886421  0000 001112211 1344444443 35568899999999999998753 2344443

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.79  E-value=1.2  Score=44.23  Aligned_cols=158  Identities=16%  Similarity=0.107  Sum_probs=106.5

Q ss_pred             CCCCchhHHHhcCCHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcHHHHHHhhcCCC
Q 015496          162 EPIDNANDLSKLGGLSVLVGQLNH----P-------DTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSF  229 (405)
Q Consensus       162 e~iDnA~~~~~~Ggi~~Lv~lL~s----~-------~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-G~lp~Ll~LL~s~~  229 (405)
                      .+++....|. .||+..|+.+|..    .       +..++..+..||..+. ||...-+.++.+ +++..|...|.++.
T Consensus        36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~  113 (386)
T 2bnx_A           36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV  113 (386)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTS
T ss_pred             CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCC
Confidence            3567788886 6899999887741    1       4578899999999887 566666667665 78999999998888


Q ss_pred             HHHHHHHHHHHHHHhcCCh-hh-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015496          230 VEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK  297 (405)
Q Consensus       230 ~~v~~kAl~ALS~lir~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~  297 (405)
                      ..++..++--|+.+|--.. .+ ...++          +..-+..|+..+.+. .+..++..++.+|..|+.+.   ++.
T Consensus       114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~a~m~lIN~lv~~~---~dl  189 (386)
T 2bnx_A          114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITPA---EEL  189 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHTTC---SCH
T ss_pred             chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHHHHHHHHHHHHHHCCC---CCH
Confidence            8888777665655554322 23 33222          223466788888754 46778889999999998531   111


Q ss_pred             ----CcchhHHhCCcHHHHHHhccCCChHHHH
Q 015496          298 ----VEPPLFRDRFFLKSVVDLTASADLDLQE  325 (405)
Q Consensus       298 ----~~~~~l~~~g~l~~Lv~LL~~~D~~v~E  325 (405)
                          ..+..|...|+.+.+-.+-...++++..
T Consensus       190 ~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~  221 (386)
T 2bnx_A          190 DFRVHIRSELMRLGLHQVLQELREIENEDMKV  221 (386)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHCChHHHHHHHhccCChhHHH
Confidence                2345567788888776665445554443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=94.41  E-value=0.57  Score=52.25  Aligned_cols=112  Identities=13%  Similarity=0.030  Sum_probs=83.4

Q ss_pred             CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHh
Q 015496          126 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKAS  202 (405)
Q Consensus       126 ~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~---~~~Ir~~Aa~~Lg~~a  202 (405)
                      ||.+++.+.+|++..-++..+.+.|..|.+-|+.+=++.+         +|.....+|.++   ++.+|..|+.+|-+..
T Consensus         1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I   71 (980)
T 3ibv_A            1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKV   71 (980)
T ss_dssp             --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence            4667788888998777888889999999888888765543         888999999653   7999999999999988


Q ss_pred             cCChHh----HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC
Q 015496          203 QNNPLV----QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN  246 (405)
Q Consensus       203 qNN~~~----Q~~vle~G~lp~Ll~LL~-s~~~~v~~kAl~ALS~lir~  246 (405)
                      +.-|..    +...++...+..+.+.-. .++..++.|...+++.++..
T Consensus        72 ~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~  120 (980)
T 3ibv_A           72 REWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ  120 (980)
T ss_dssp             HHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred             HhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence            744444    556666666666665211 23456889999999988765

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=94.31  E-value=0.36  Score=49.47  Aligned_cols=122  Identities=11%  Similarity=0.108  Sum_probs=87.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHH
Q 015496          185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ  264 (405)
Q Consensus       185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~  264 (405)
                      .+++..+..|+..|......-|..++.     +|..+++|..+++..+|..|+..|..+|++  .....+     .++|.
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki-----aDvL~  106 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV-----ADILT  106 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH-----HHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH-----HHHHH
Confidence            357999999999999999999999986     568899999999999999999999999998  444443     57999


Q ss_pred             HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496          265 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN  333 (405)
Q Consensus       265 ~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~  333 (405)
                      ++|+++  +..-..-+-..|..|...     ++        .+.+..+...+.++|..+||+++..|..
T Consensus       107 QlLqtd--d~~E~~~V~~sL~sllk~-----Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          107 QLLQTD--DSAEFNLVNNALLSIFKM-----DA--------KGTLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             HHTTCC--CHHHHHHHHHHHHHHHHH-----CH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHhcc--chHHHHHHHHHHHHHHhc-----Ch--------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            999976  222233344444444431     11        2344444444444567777777776643

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=94.30  E-value=0.36  Score=54.11  Aligned_cols=145  Identities=10%  Similarity=0.070  Sum_probs=87.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC---CH--HHHHHHHHHHHHHhc---CChhhHHHHHhc
Q 015496          186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FV--EEAVKALYTVSSLIR---NNLAGQEMFYVE  257 (405)
Q Consensus       186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~---~~--~v~~kAl~ALS~lir---~~~~~~~~f~~~  257 (405)
                      .+=..++.++|++|.++.+-..-+..-.=..++|.|+.+....   ++  -++..++|.||...+   .++....     
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----  539 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----  539 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----
Confidence            5678899999999999976443333222235788888888631   12  245567799987554   2232211     


Q ss_pred             CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch---hcc-CCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015496          258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ---LEN-MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN  333 (405)
Q Consensus       258 gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~---~~~-~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~  333 (405)
                      ..+..|...+.++  ..+++..|++++.+||..-   +.. ...+..+.+.  .++..+...+..-+..-+..+..+++.
T Consensus       540 ~vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~--~il~~l~~~~~~l~~~~~~~lyeai~~  615 (1023)
T 4hat_C          540 TVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ--TIIRDIQKTTADLQPQQVHTFYKACGI  615 (1023)
T ss_dssp             HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH--HHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            2345566666554  4679999999999999631   000 0000011111  233334444444577777899999999


Q ss_pred             HhcCCh
Q 015496          334 LLQLRT  339 (405)
Q Consensus       334 L~~~~~  339 (405)
                      +++..+
T Consensus       616 vi~~~~  621 (1023)
T 4hat_C          616 IISEER  621 (1023)
T ss_dssp             HHTTCC
T ss_pred             HHHhCC
Confidence            987644

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.11  E-value=0.88  Score=41.89  Aligned_cols=143  Identities=17%  Similarity=0.186  Sum_probs=98.3

Q ss_pred             HcCcHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHH
Q 015496          214 ELGALSKLMKMVKS----S-------FVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAV  281 (405)
Q Consensus       214 e~G~lp~Ll~LL~s----~-------~~~v~~kAl~ALS~lir~~~~~~~~f~~-~gGi~~L~~lL~s~~~~~kl~~kA~  281 (405)
                      ..+|+..|+.+|..    +       +......++.+|-++. ++..+.+.++. .+++..|...|.++  ..+++.-++
T Consensus        41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~r~~~l  117 (233)
T 2f31_A           41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAA  117 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTT--SHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHH
Confidence            56888888888753    1       1233556778887776 66778888876 46789999999876  678899999


Q ss_pred             HHHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhcCChhh------HHHHHh
Q 015496          282 SLVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRTTE------ALVLKD  347 (405)
Q Consensus       282 ~lLs~L~~~~~~~~-~~~~~~~l------~~~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~~~~~~~------~~~v~~  347 (405)
                      -+++.+|....+++ .+...+.+      .+..-...+++.|.. .+.+++..++..+-.+....++-      |..+. 
T Consensus       118 eLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~-  196 (233)
T 2f31_A          118 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-  196 (233)
T ss_dssp             HHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-
T ss_pred             HHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-
Confidence            99999996420001 11111221      222344557777774 57899999998888888876542      45666 


Q ss_pred             cCCchHHHHHHHH
Q 015496          348 FCGLDTALERLRQ  360 (405)
Q Consensus       348 ~~Gl~~~L~~L~~  360 (405)
                      .+|+.+.+.+|+.
T Consensus       197 ~~Gl~~il~~l~~  209 (233)
T 2f31_A          197 RLGLHQVLQELRE  209 (233)
T ss_dssp             HTTHHHHHHHHHH
T ss_pred             HCChHHHHHHHhc
Confidence            8999999999974

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=93.94  E-value=0.72  Score=50.36  Aligned_cols=138  Identities=13%  Similarity=0.069  Sum_probs=91.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 015496          184 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD  260 (405)
Q Consensus       184 ~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL---~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi  260 (405)
                      .+.+-..+..|++++|.++.+-....     ...++.++..+   .++++.++..++|+||.+.+...... .++ ...+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence            45677889999999999997633211     23344455443   33467799999999998875322211 232 3577


Q ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcCC
Q 015496          261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~al~aL~~L~~~~  338 (405)
                      +.|...|++    .+++..|++++.+||..    ......+.+  ..++..+..++..+  +.+.++.+..+++.++...
T Consensus       532 ~~l~~~l~~----~~V~~~A~~al~~l~~~----~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          532 PLVLHALGN----PELSVSSVSTLKKICRE----CKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             HHHHHHTTC----GGGHHHHHHHHHHHHHH----TGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhCC----chHHHHHHHHHHHHHHH----HHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            888888864    35789999999999963    222222222  24555666667653  5788999999999998643

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=93.40  E-value=0.77  Score=50.52  Aligned_cols=181  Identities=9%  Similarity=0.030  Sum_probs=103.1

Q ss_pred             CHHHHHHHHHHHHHccCCCC----chh------HHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496          146 SLEDSQRALQELLILVEPID----NAN------DLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKASQNNPLVQKQV  212 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iD----nA~------~~~~~Ggi~~Lv~lL~s~---~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v  212 (405)
                      +-..|..|+-.+.-+.+...    ...      ++... ....++..|.++   ++-+|..|+|+||..+..-+   ...
T Consensus       418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~-l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~  493 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF-FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQ  493 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH-HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH-HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHH
Confidence            34567777777776654321    111      22111 011234455555   89999999999999987521   122


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-------h-hHHHHHh--cCcHHHHHHhhcCCC-ccHH--HHHH
Q 015496          213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-------A-GQEMFYV--EAGDLMLQDILGNSS-FEIR--LHRK  279 (405)
Q Consensus       213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~-------~-~~~~f~~--~gGi~~L~~lL~s~~-~~~k--l~~k  279 (405)
                      + ...++.++..|.+++..|+..|++||.+++.+..       . ....+..  ...++.|..++.... .+.+  ....
T Consensus       494 l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~  572 (960)
T 1wa5_C          494 L-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF  572 (960)
T ss_dssp             H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred             H-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence            2 3467888888888788899999999999987421       1 1111211  124455666666531 0111  1235


Q ss_pred             HHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc----cC-CChHHHHHHHHHHHHHhcC
Q 015496          280 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT----AS-ADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       280 A~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL----~~-~D~~v~E~al~aL~~L~~~  337 (405)
                      +..++..++..    ..++..+.+.  .+++.|...+    ++ ++..+...++.+|+.++..
T Consensus       573 l~~al~~vv~~----~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~  629 (960)
T 1wa5_C          573 LMRSIFRVLQT----SEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY  629 (960)
T ss_dssp             HHHHHHHHHHH----HTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH----HHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence            66666666542    1233333222  2444444443    22 4677888888899888765

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=93.02  E-value=0.064  Score=55.03  Aligned_cols=82  Identities=15%  Similarity=0.131  Sum_probs=69.3

Q ss_pred             chhHHHhc--CCHHHHHHhcCC----------CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHH
Q 015496          166 NANDLSKL--GGLSVLVGQLNH----------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA  233 (405)
Q Consensus       166 nA~~~~~~--Ggi~~Lv~lL~s----------~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~  233 (405)
                      ||..|.+.  ..+..|+++|++          .++.+.+-||.=||..++..|..+..+-+.|+=..+++|+.+++++||
T Consensus       385 Na~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr  464 (480)
T 1ho8_A          385 NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK  464 (480)
T ss_dssp             HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred             HHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence            44444442  246778888963          478899999999999999999999998899999999999999999999


Q ss_pred             HHHHHHHHHHhcCC
Q 015496          234 VKALYTVSSLIRNN  247 (405)
Q Consensus       234 ~kAl~ALS~lir~~  247 (405)
                      ..|+.|+.-++.++
T Consensus       465 ~~AL~avQklm~~~  478 (480)
T 1ho8_A          465 YEALKATQAIIGYT  478 (480)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887764

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=92.95  E-value=2.9  Score=40.17  Aligned_cols=174  Identities=12%  Similarity=0.090  Sum_probs=98.7

Q ss_pred             CCCCHHHHHHhHHHHHHHHHHcC-----CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHH
Q 015496          103 QRLSPSELKKRQMEIKELMEKLK-----TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS  177 (405)
Q Consensus       103 ~~~s~e~l~~r~~~L~~a~~~~~-----~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~  177 (405)
                      .+++|+++.    -|.++++.+.     .+++ ..+.-..+++   ..+.+.+.-++|-|+-++-+.+.+..|...+.-.
T Consensus        75 ~~Ls~~el~----~L~~l~~~l~~~s~~~~~~-~~l~~l~kil---~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~  146 (304)
T 3ebb_A           75 KKLTEDDLI----LLEKILSLICNSSSEKPTV-QQLQILWKAI---NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGA  146 (304)
T ss_dssp             GCCCHHHHH----HHHHHHHHHHTTCSSCCCH-HHHHHHHHHH---TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHH
T ss_pred             cCcCHHHHH----HHHHHHHHHhccCCCccch-HHHHHHHHHH---cCCHHhHHHHHHHHHHHHcCccHHHHhhccccch
Confidence            468998763    3344443331     2222 2333333443   3556788899999998876665555555443323


Q ss_pred             HHH----HhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHc--CcHHHHHHhhcCCCHHHHHHH---HHHHHHHhcCC
Q 015496          178 VLV----GQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKA---LYTVSSLIRNN  247 (405)
Q Consensus       178 ~Lv----~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~--G~lp~Ll~LL~s~~~~v~~kA---l~ALS~lir~~  247 (405)
                      .++    ..+. ...+..+..++++++|+.++ +..++.++..  ..++.+...+.+++..++..+   ++-++......
T Consensus       147 ~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~  225 (304)
T 3ebb_A          147 QFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD  225 (304)
T ss_dssp             HHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc
Confidence            333    4443 24577899999999999986 5577766653  344445555555566766543   33333332221


Q ss_pred             hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          248 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       248 ~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      .. .+.-.  --+..+..++... .+....-+++-++.+|+.
T Consensus       226 ~~-~~~~~--~ll~~l~~il~~~-~d~EalyR~LvALGtL~~  263 (304)
T 3ebb_A          226 HN-IEGKA--QCLSLISTILEVV-QDLEATFRLLVALGTLIS  263 (304)
T ss_dssp             CC-HHHHH--HHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHT
T ss_pred             CC-chHHH--HHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHh
Confidence            11 11111  1344555556543 356677889999999985

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=92.89  E-value=1.2  Score=49.76  Aligned_cols=153  Identities=13%  Similarity=0.145  Sum_probs=109.0

Q ss_pred             HHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcC
Q 015496          151 QRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS  227 (405)
Q Consensus       151 ~~AL~~L~~Lve~iDn--A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~LL~s  227 (405)
                      +.|+..+..+++....  .-.-+-.+.+|.++..+......+|..|..++..++++ ||....     ..+|.|+..+.+
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~  144 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVE  144 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhcc
Confidence            6677777777754432  22233346788888988888899999999888888875 454443     458999999976


Q ss_pred             CC-HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015496          228 SF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR  306 (405)
Q Consensus       228 ~~-~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~  306 (405)
                      .. =..+..|+..|..++...+. +-...--..+|.+..++-+.  ...++..|..++..+|..-   .|.+.      .
T Consensus       145 ~~kw~~k~~~l~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~~~~~~~---~n~d~------~  212 (986)
T 2iw3_A          145 TNKWQEKIAILAAFSAMVDAAKD-QVALRMPELIPVLSETMWDT--KKEVKAAATAAMTKATETV---DNKDI------E  212 (986)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSHH-HHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHGGGC---CCTTT------G
T ss_pred             ccchHHHHHHHHHHHHHHHHhHH-HHHHhccchhcchHhhcccC--cHHHHHHHHHHHHHHHhcC---CCcch------h
Confidence            54 36688899999999876643 22223346789999999876  4567888888999998631   23221      3


Q ss_pred             CcHHHHHHhccCCC
Q 015496          307 FFLKSVVDLTASAD  320 (405)
Q Consensus       307 g~l~~Lv~LL~~~D  320 (405)
                      .++|.|++.+.+++
T Consensus       213 ~~~~~~~~~~~~p~  226 (986)
T 2iw3_A          213 RFIPSLIQCIADPT  226 (986)
T ss_dssp             GGHHHHHHHHHCTT
T ss_pred             hhHHHHHHHhcChh
Confidence            57899999998875

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=92.83  E-value=6.3  Score=36.94  Aligned_cols=131  Identities=8%  Similarity=0.064  Sum_probs=92.8

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      +.++|+..|....+++-+-|.+ -+-  .-++.++.+-..++.++|...+..|..++...++...     ..++.|..++
T Consensus        28 ~~~~kl~~L~qa~el~~~~dp~-ll~--~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll   99 (257)
T 3gs3_A           28 SPSTKCELLAKVQETVLGSCAE-LAE--EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL   99 (257)
T ss_dssp             CHHHHHHHHHHHHHHHTTTTGG-GHH--HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHccCHh-HHH--HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence            4579999999999977554432 222  2477778877678999999999999999976665443     4578899999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc--------H-------HHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------D-------LMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG--------i-------~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      +++++.+.++++-+.+++-   +...+.+...++        |       ..++..+.+.  +..+|..+.-++..+..
T Consensus       100 ~d~d~~V~K~~I~~~~~iY---~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~--n~gvkl~~iKF~e~vIl  173 (257)
T 3gs3_A          100 RDNSAQVIKRVIQACGSIY---KNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE--NDGIRTNAIKFLEGVVV  173 (257)
T ss_dssp             TCSCHHHHHHHHHHHHHHH---HHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS--CHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC--CcchHHHHHHHHHHHHH
Confidence            9888889888888888764   333333333332        2       2344445554  67788899988888763

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=92.61  E-value=1.6  Score=47.65  Aligned_cols=136  Identities=14%  Similarity=0.116  Sum_probs=85.3

Q ss_pred             CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhc---CCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHH
Q 015496          145 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL---NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL  221 (405)
Q Consensus       145 ~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL---~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~L  221 (405)
                      .+-..+..++-.+.-+.+.+....    ..-++.++..|   ..+++.||..++|+||..+.--.... .++ ...++.|
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l  534 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLV  534 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHH
T ss_pred             CchHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHH
Confidence            355677777777777766653211    11233344333   34688999999999998875211111 222 3788999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          222 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       222 l~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      +..+.+  +.++..|++|+.++++..+....-++ ..-++.|..++..+..+...+..+..++..++.
T Consensus       535 ~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~  599 (963)
T 2x19_B          535 LHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS  599 (963)
T ss_dssp             HHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence            988865  67899999999999976543221111 123445556666532355678788888888874

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=92.52  E-value=1.2  Score=42.17  Aligned_cols=199  Identities=16%  Similarity=0.131  Sum_probs=132.4

Q ss_pred             hHHHHHHHhhcCCCccccchhhccCCCCHHHHHHhHHHHH----HHHHHcCCCCHHHHHHHHHHHhhc---CCCCHH--H
Q 015496           79 IDGMLQWAIGHSDPAKLKETAQDVQRLSPSELKKRQMEIK----ELMEKLKTPSDAQLIQIAIDDLNN---STLSLE--D  149 (405)
Q Consensus        79 l~~LLkwsi~~s~~~~~~~~~~~~~~~s~e~l~~r~~~L~----~a~~~~~~~~d~~lmk~al~~L~~---~~~t~e--~  149 (405)
                      ++.+.+|-.+-.+|+....+-.        ++.|||+-..    -.+.++|  ..+.+++|.+.+.-.   +..+..  +
T Consensus         2 ~~~i~qli~~L~~p~~Re~AL~--------eLsk~Re~~~~La~~LW~S~G--tia~LLQEIisiYp~lspp~Lt~~~Sn   71 (268)
T 2fv2_A            2 REKIYQWINELSSPETRENALL--------ELSKKRESVPDLAPMLWHSFG--TIAALLQEIVNIYPSINPPTLTAHQSN   71 (268)
T ss_dssp             CHHHHHHHHHTSSTTTHHHHHH--------HHHHHTTTCTTHHHHHHHSTT--HHHHHHHHHHHTGGGBTTBCCCHHHHH
T ss_pred             hHHHHHHHHHhcCchhHHHHHH--------HHHHhhhccccHHHHHHhccC--HHHHHHHHHHHHcccCCCcccCHHHHh
Confidence            4677889888777766322211        1112222111    2345444  356778888877643   233332  3


Q ss_pred             H-HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCC-----CHHHHHHHHHHHHHHhc-CChHhHHHHHHcCcHHHHH
Q 015496          150 S-QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAWILGKASQ-NNPLVQKQVLELGALSKLM  222 (405)
Q Consensus       150 k-~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~-----~~~Ir~~Aa~~Lg~~aq-NN~~~Q~~vle~G~lp~Ll  222 (405)
                      | ..||--|.-.+.+.|....|.+....-.|..+|+..     .+-+|-.+..+||.+++ +++++-...++.+.+|..+
T Consensus        72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            4 456666777778899999999998777777788632     37799999999999997 5778888888999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHhcCChhhHHH-------HHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          223 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEM-------FYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       223 ~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~-------f~~~-gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      +.+..+++--+..|.+-+..|+-+. .+...       |... ..+..++.-+... .+.++.+.++.+..-|+.
T Consensus       152 rime~GselSKtvAtfIlqKIL~dd-~GL~YiC~t~eRF~av~~vL~~mV~~l~~~-ps~RLLKhiircYlRLsd  224 (268)
T 2fv2_A          152 RIMESGSELSKTVATFILQKILLDD-TGLAYICQTYERFSHVAMILGKMVLQLSKE-PSARLLKHVVRCYLRLSD  224 (268)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHSH-HHHHHHTSSHHHHHHHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTT
T ss_pred             HHHhhccHHHHHHHHHHHHHHhccc-hhHHHHHccHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHhc
Confidence            9999999888889999998887653 33333       3221 1222223223222 367888888888777764

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=92.36  E-value=2.6  Score=46.32  Aligned_cols=193  Identities=9%  Similarity=0.096  Sum_probs=116.6

Q ss_pred             HHHHHhhcCC-CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-------h
Q 015496          135 IAIDDLNNST-LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN-------P  206 (405)
Q Consensus       135 ~al~~L~~~~-~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-------~  206 (405)
                      ..+..+.++. ..+--|..|+..+..+.+.+. ...+.  ..++.+++.|.++++.||..||++|.+++.+.       +
T Consensus       459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~  535 (960)
T 1wa5_C          459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAF  535 (960)
T ss_dssp             HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred             HhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccc
Confidence            3455565542 245678889999999887762 22222  35788888888888999999999999988741       1


Q ss_pred             Hh-HHHHHH--cCcHHHHHHhhcCCC---HH--HHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhh----cCCCccH
Q 015496          207 LV-QKQVLE--LGALSKLMKMVKSSF---VE--EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL----GNSSFEI  274 (405)
Q Consensus       207 ~~-Q~~vle--~G~lp~Ll~LL~s~~---~~--v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL----~s~~~~~  274 (405)
                      .. +..+..  ...++.|+.++....   ..  ....++.||+.++.........+.. .-++.|...+    +++ .+.
T Consensus       536 ~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~-~~~  613 (960)
T 1wa5_C          536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNP-SNP  613 (960)
T ss_dssp             SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSC-CCH
T ss_pred             cccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCC-CCc
Confidence            21 222211  145667777777641   11  2345677777665533222111111 1223344333    333 356


Q ss_pred             HHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          275 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       275 kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      .++..++-+|+.+++.    .+++....+ ...+++.+...|.....++.+.+...+..++..
T Consensus       614 ~~~~~~~e~l~~l~~~----~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~  671 (960)
T 1wa5_C          614 RFTHYTFESIGAILNY----TQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ  671 (960)
T ss_dssp             HHHHHHHHHHHHHHHT----SCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc----CCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence            6777788888888863    233333333 345667777888777677888888888777643

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=92.08  E-value=0.85  Score=49.98  Aligned_cols=131  Identities=10%  Similarity=0.086  Sum_probs=81.7

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH---hcC--CCCHHHHHHHHHHHHHHhcC---ChHhHHHHHHcCc
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG---QLN--HPDTDIRKISAWILGKASQN---NPLVQKQVLELGA  217 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~---lL~--s~~~~Ir~~Aa~~Lg~~aqN---N~~~Q~~vle~G~  217 (405)
                      +-..++.|+-.+.-+.+.+.....    ..++.++.   .|.  .+++.||..|+|+||..+.-   +++.-     ...
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~~----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-----~~v  547 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEEK----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-----PPA  547 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-----HHH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhhh----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-----HHH
Confidence            335777888888877776542211    22333333   333  24899999999999988742   22111     135


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          218 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       218 lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      ++.|+..++   +.++..|.+|+.+++++......-++ ..-+..|..++..+..+.+.+..+..++..++.
T Consensus       548 l~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~  615 (971)
T 2x1g_F          548 INLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS  615 (971)
T ss_dssp             HHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence            666776663   56789999999999987654333222 234556667777643456778888888998875

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.99  E-value=1  Score=44.74  Aligned_cols=141  Identities=16%  Similarity=0.174  Sum_probs=96.6

Q ss_pred             cCcHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCChhhHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHH
Q 015496          215 LGALSKLMKMVKS----S-------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVS  282 (405)
Q Consensus       215 ~G~lp~Ll~LL~s----~-------~~~v~~kAl~ALS~lir~~~~~~~~f~~~-gGi~~L~~lL~s~~~~~kl~~kA~~  282 (405)
                      .+|+..|+.+|..    +       +......++.+|-+++ |+..+.+.++.+ +++..|..+|.++  .++++..++-
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~--~~~~r~~vle  122 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAK  122 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHH
Confidence            5777777777642    1       1234567788888776 567777777764 6889999999875  6788889999


Q ss_pred             HHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhcc-CCChHHHHHHHHHHHHHhcCChhh------HHHHHhc
Q 015496          283 LVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTTE------ALVLKDF  348 (405)
Q Consensus       283 lLs~L~~~~~~~~-~~~~~~~l------~~~g~l~~Lv~LL~-~~D~~v~E~al~aL~~L~~~~~~~------~~~v~~~  348 (405)
                      +++.+|....+++ .+...+.+      .+..-...+++.+. +.+.+++..++..+-.++...++-      |..+. .
T Consensus       123 LL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~-~  201 (386)
T 2bnx_A          123 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-R  201 (386)
T ss_dssp             HHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH-H
T ss_pred             HHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-H
Confidence            9999996420001 11111111      22334455777776 458899999998888888877642      46677 8


Q ss_pred             CCchHHHHHHH
Q 015496          349 CGLDTALERLR  359 (405)
Q Consensus       349 ~Gl~~~L~~L~  359 (405)
                      +|+.+.+.+|+
T Consensus       202 ~GL~~il~~Lr  212 (386)
T 2bnx_A          202 LGLHQVLQELR  212 (386)
T ss_dssp             TTHHHHHHHHT
T ss_pred             CChHHHHHHHh
Confidence            99999999887

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=91.92  E-value=6.4  Score=38.45  Aligned_cols=143  Identities=15%  Similarity=0.115  Sum_probs=103.6

Q ss_pred             HHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC---cHHHHHHhhcC
Q 015496          193 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLMLQDILGN  269 (405)
Q Consensus       193 ~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g---Gi~~L~~lL~s  269 (405)
                      .+-.+|..++. ++.....++..+.+-.+.+.+..++=++..-|...+-.+...|+.....|+..+   -+...-.+|.+
T Consensus       142 ~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S  220 (341)
T 1upk_A          142 NCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS  220 (341)
T ss_dssp             HHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            33444444444 355666666667777788888877767788888888888777888777888755   35566778888


Q ss_pred             CCccHHHHHHHHHHHHHHhhchhccCCCCcch-hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhh
Q 015496          270 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE  341 (405)
Q Consensus       270 ~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~-~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~  341 (405)
                      +  +.=.||.++-+|+.|....   .+..... .+.+..-++.++.+|++....+|-.|-....-.+..+...
T Consensus       221 ~--NYVTkRQSlKLLgelLldr---~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~  288 (341)
T 1upk_A          221 E--NYVTKRQSLKLLGELLLDR---HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT  288 (341)
T ss_dssp             S--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC
T ss_pred             C--cchhHHHHHHHHHHHHhCc---hHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCC
Confidence            7  5668999999999998531   2222222 2344578899999999999999999999999888876543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=91.25  E-value=1.6  Score=47.82  Aligned_cols=134  Identities=12%  Similarity=0.056  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh---c--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 015496          186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---K--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD  260 (405)
Q Consensus       186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL---~--s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi  260 (405)
                      .+-..+..|..+++.++.+-+...     ...++.++.++   .  +.++.+|..++|+||.+........+ ++ ...+
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl  548 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAI  548 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHH
Confidence            466789999999999998644322     13444444433   3  23678999999999987643211111 11 1234


Q ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcC
Q 015496          261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~al~aL~~L~~~  337 (405)
                      +.|+..|.     .+++..|++++.+||..    ......+.+  ..++..+..++..+  +.+.++.+..++..++..
T Consensus       549 ~~l~~~l~-----~~v~~~A~~al~~l~~~----~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~  616 (971)
T 2x1g_F          549 NLLVRGLN-----SSMSAQATLGLKELCRD----CQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL  616 (971)
T ss_dssp             HHHHHHHH-----SSCHHHHHHHHHHHHHH----CHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhC-----hHHHHHHHHHHHHHHHH----HHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence            56666663     24689999999999953    221111121  24666777777773  678999999999998864

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=91.01  E-value=1.2  Score=50.17  Aligned_cols=126  Identities=11%  Similarity=0.153  Sum_probs=80.4

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC-------CCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 015496          185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-------SFVEEAVKALYTVSSLIRNNLAGQEMFYVE  257 (405)
Q Consensus       185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s-------~~~~v~~kAl~ALS~lir~~~~~~~~f~~~  257 (405)
                      ..+.+-+..+..+|||+..  |         ..++.|.+++..       ....++..|++||..+....|...      
T Consensus       451 ~~~~~~~~~~LkaLGN~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v------  513 (1056)
T 1lsh_A          451 RAKEEEIVLALKALGNAGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV------  513 (1056)
T ss_dssp             TTCHHHHHHHHHHHHHHTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH------
T ss_pred             cCChHHHHHHHHHhhccCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH------
Confidence            4455556666667776664  2         357777777742       134678889999999887665432      


Q ss_pred             CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhc
Q 015496          258 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       258 gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~~  336 (405)
                        -++|..++.+...+..+|.-|+..|-. +       +|       ....+..++..+.. .+..|.--+...|.+++.
T Consensus       514 --~~il~~i~~n~~e~~EvRiaA~~~Lm~-t-------~P-------~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~  576 (1056)
T 1lsh_A          514 --QEIVLPIFLNVAIKSELRIRSCIVFFE-S-------KP-------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSR  576 (1056)
T ss_dssp             --HHHHHHHHHCTTSCHHHHHHHHHHHHH-T-------CC-------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             --HHHHHHHhcCCCCChHHHHHHHHHHHH-H-------Cc-------CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence              245666775554566777766655532 1       12       13467777777776 478888888888888887


Q ss_pred             CChhhHHH
Q 015496          337 LRTTEALV  344 (405)
Q Consensus       337 ~~~~~~~~  344 (405)
                      ...-+.+.
T Consensus       577 s~~P~~~~  584 (1056)
T 1lsh_A          577 SSNPEFRD  584 (1056)
T ss_dssp             CCSGGGHH
T ss_pred             cCCcchHH
Confidence            64334333

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=90.71  E-value=2.2  Score=41.16  Aligned_cols=108  Identities=17%  Similarity=0.134  Sum_probs=69.9

Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc--CcHH----HHHHhhcCCC-ccHHHHHHHHHHHHHHhh
Q 015496          217 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE--AGDL----MLQDILGNSS-FEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       217 ~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~--gGi~----~L~~lL~s~~-~~~kl~~kA~~lLs~L~~  289 (405)
                      .+..|+ +..+.++.++.+|...|++.+||||++.+.+.+.  +-+.    -|..++...+ ....++++-+.+|.-|+.
T Consensus        72 lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~  150 (315)
T 3qml_C           72 LLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPV  150 (315)
T ss_dssp             HHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhc
Confidence            334444 3344456789999999999999999999977653  2222    2333333211 123567778888888875


Q ss_pred             chhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHh
Q 015496          290 CQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLL  335 (405)
Q Consensus       290 ~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~--D~~v~E~al~aL~~L~  335 (405)
                      +      +.   .|. ...+..|.+++...  +.+++.+++..+..+.
T Consensus       151 ~------~~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f  188 (315)
T 3qml_C          151 T------SE---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKIL  188 (315)
T ss_dssp             C------ST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred             C------hH---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence            2      21   232 33456777776666  9999999999998776

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=90.38  E-value=6.3  Score=43.69  Aligned_cols=161  Identities=12%  Similarity=0.093  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHHHHHH
Q 015496          189 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQD  265 (405)
Q Consensus       189 ~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s--~~~~v~~kAl~ALS~lir~~~~~-~~~f~~~gGi~~L~~  265 (405)
                      ..+..+..+|-.++...+..   ++. -.++.|-+.+.+  .+-..+..++||+|++....... ...|+ ...++.|..
T Consensus       428 ~~~~~~~~~L~~l~~~~~~~---~l~-~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~  502 (1049)
T 3m1i_C          428 QLYKSEREVLVYLTHLNVID---TEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLD  502 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHH---HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHH
Confidence            34666777888887544321   111 123444444543  23456889999999997654332 12221 123344444


Q ss_pred             hhcC--CC-ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhH
Q 015496          266 ILGN--SS-FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA  342 (405)
Q Consensus       266 lL~s--~~-~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~  342 (405)
                      +...  ++ ....++..++|+++.++..-  ..++   +.+  ..+++.++..+.++++.++..|+.++.+++.   +++
T Consensus       503 l~~~~~~~~~~~~v~~~~~~~lgry~~~~--~~~~---~~l--~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~---~~~  572 (1049)
T 3m1i_C          503 LTVKKRGKDNKAVVASDIMYVVGQYPRFL--KAHW---NFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQ---KCK  572 (1049)
T ss_dssp             HTTSSCSHHHHHHHHHHHHHHHHHCHHHH--HHCH---HHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH---HHT
T ss_pred             HHhhhccccchHHHHHHHHHHHHHHHHHH--HhHH---HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HHH
Confidence            3221  10 13444446889999876421  0111   122  2466777778888889999999999999996   344


Q ss_pred             HHHH--hcCCchHHHHHHHHHHHH
Q 015496          343 LVLK--DFCGLDTALERLRQQLQE  364 (405)
Q Consensus       343 ~~v~--~~~Gl~~~L~~L~~~~~~  364 (405)
                      ..+.  +.+.+.|.+..+.+.+..
T Consensus       573 ~~l~~~~~~~~~p~~~~il~~l~~  596 (1049)
T 3m1i_C          573 YHFVIQQPRESEPFIQTIIRDIQK  596 (1049)
T ss_dssp             HHHHSCCTTCSSCHHHHHHHTHHH
T ss_pred             HHhhcccCCCCCcHHHHHHHHHHH
Confidence            4432  122233445555444433

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=89.97  E-value=2.8  Score=47.07  Aligned_cols=196  Identities=15%  Similarity=0.150  Sum_probs=110.1

Q ss_pred             ccCCCCHHHHH----------HhHHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHH
Q 015496          101 DVQRLSPSELK----------KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDL  170 (405)
Q Consensus       101 ~~~~~s~e~l~----------~r~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~  170 (405)
                      -.+.++.|+++          +-|.|+.+++-..|.+.-...|++   .+.+...+..+...++-.+..++.. +  .. 
T Consensus       319 ~lR~~~~e~L~~l~~~~~~~~~~r~~~lDal~~aGT~~a~~~i~~---~i~~~~l~~~ea~~~l~~~~~~~~P-t--~e-  391 (1056)
T 1lsh_A          319 FLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPAMATSEALLFLKR---TLASEQLTSAEATQIVASTLSNQQA-T--RE-  391 (1056)
T ss_dssp             HHTTSCHHHHHHHHHHHTTSHHHHHHHHHHHHHHCSHHHHHHHHH---HHHTTCSCHHHHHHHHHHHHHTCCC-C--HH-
T ss_pred             HHhcCCHHHHHHHHHHHhccHHHHHHHHHHhHhcCCHHHHHHHHH---HHHcCCCCHHHHHHHHHHhhccCCC-C--HH-
Confidence            34567776653          123566666666555433344444   4566666766654454444444321 1  11 


Q ss_pred             HhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhc----CChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015496          171 SKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQ----NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS  242 (405)
Q Consensus       171 ~~~Ggi~~Lv~lL~s----~~~~Ir~~Aa~~Lg~~aq----NN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~  242 (405)
                          .+..+..++.+    .++.+|..|.-++|+++.    +++.|...+++ -....|.+.+...+...+..++.||+|
T Consensus       392 ----~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN  466 (1056)
T 1lsh_A          392 ----SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGN  466 (1056)
T ss_dssp             ----HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence                23445566654    467888888888888774    23222211110 122234444556666678889999999


Q ss_pred             HhcCChhhHHHHHhcCcHHHHHHhhcC-----CCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc-
Q 015496          243 LIRNNLAGQEMFYVEAGDLMLQDILGN-----SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT-  316 (405)
Q Consensus       243 lir~~~~~~~~f~~~gGi~~L~~lL~s-----~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL-  316 (405)
                      +  +++.         .++.|..++..     .+...++|..|+++|..+...     .|        ..+-+.+..+. 
T Consensus       467 ~--g~p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-----~p--------~~v~~il~~i~~  522 (1056)
T 1lsh_A          467 A--GQPN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-----DP--------RKVQEIVLPIFL  522 (1056)
T ss_dssp             H--TCGG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-----CH--------HHHHHHHHHHHH
T ss_pred             c--CChh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh-----ch--------HHHHHHHHHHhc
Confidence            8  3453         45666666642     223577888899998888631     11        11223445555 


Q ss_pred             -cCCChHHHHHHHHHHH
Q 015496          317 -ASADLDLQEKALAAIK  332 (405)
Q Consensus       317 -~~~D~~v~E~al~aL~  332 (405)
                       ...++++|-.|+..|.
T Consensus       523 n~~e~~EvRiaA~~~Lm  539 (1056)
T 1lsh_A          523 NVAIKSELRIRSCIVFF  539 (1056)
T ss_dssp             CTTSCHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHH
Confidence             3457888887776554

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=89.81  E-value=3.5  Score=45.73  Aligned_cols=147  Identities=12%  Similarity=0.074  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcH
Q 015496          186 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD  260 (405)
Q Consensus       186 ~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~-----~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi  260 (405)
                      .+-..+..|++++|.++.......+.-+-...++.|+.+....     .+-++..++|++|.+.+-..... .++. ..+
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~-~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLR-TVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHH-HHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHH-HHH
Confidence            5667899999999999875433322111122444455543321     12345468899997654322111 2221 345


Q ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc---C-CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496          261 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN---M-HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~---~-~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~  336 (405)
                      +.|+..+.++  +.+++..|++++.+||..-...   . ..+..+.+  ..++..+..++..-+.+-......++..++.
T Consensus       543 ~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~  618 (1049)
T 3m1i_C          543 LKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1049)
T ss_dssp             HHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            6677777764  6789999999999999631000   0 00000111  1244444455555566666777788888765


Q ss_pred             CC
Q 015496          337 LR  338 (405)
Q Consensus       337 ~~  338 (405)
                      ..
T Consensus       619 ~~  620 (1049)
T 3m1i_C          619 EE  620 (1049)
T ss_dssp             TC
T ss_pred             cC
Confidence            43

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=89.76  E-value=13  Score=36.90  Aligned_cols=195  Identities=12%  Similarity=0.093  Sum_probs=123.5

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      +.+-+++.......  .++|+..|..+.+++-+-|- .-+  -.-++.++.+-..++.+||...+..|..++...++..-
T Consensus        25 ~~v~~lln~A~~~~--~~~Kl~~L~q~~EL~l~~dp-sLl--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~   99 (386)
T 3o2t_A           25 ERVVDLLNQAALIT--NDSKITVLKQVQELIINKDP-TLL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL   99 (386)
T ss_dssp             HHHHHHHHHHHHCC--STHHHHHHHHHHHHHHTTCG-GGG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHhhhccC--hHHHHHHHHHHHHHHhccCH-HHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444432  36799999999997544332 111  23588899988888999999999999999975554432


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCc--------HH-------HHHHhhcCCCccHH
Q 015496          211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------DL-------MLQDILGNSSFEIR  275 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gG--------i~-------~L~~lL~s~~~~~k  275 (405)
                           .+++.|..||.++++.+.++++-+.+++-   +...+.++..++        |.       .++..+.+.  +..
T Consensus       100 -----~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~--n~G  169 (386)
T 3o2t_A          100 -----KLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD--NDG  169 (386)
T ss_dssp             -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS--SHH
T ss_pred             -----HHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC--Ccc
Confidence                 45788899998888888888888888874   344444444333        22       334445554  677


Q ss_pred             HHHHHHHHHHHHhhchhcc-CCCC---------------------cchhHHh--CCcHHHHHHhccCC--ChHHHHHHHH
Q 015496          276 LHRKAVSLVGDLAKCQLEN-MHKV---------------------EPPLFRD--RFFLKSVVDLTASA--DLDLQEKALA  329 (405)
Q Consensus       276 l~~kA~~lLs~L~~~~~~~-~~~~---------------------~~~~l~~--~g~l~~Lv~LL~~~--D~~v~E~al~  329 (405)
                      +|..++-++..+..-+... .+++                     ....+..  .+++..|+..+..+  +.-....+++
T Consensus       170 Vrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~ln  249 (386)
T 3o2t_A          170 IRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALG  249 (386)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHH
Confidence            8889998888876322100 0100                     0112222  37788888888764  3445566777


Q ss_pred             HHHHHhcCChh
Q 015496          330 AIKNLLQLRTT  340 (405)
Q Consensus       330 aL~~L~~~~~~  340 (405)
                      .|..|+.....
T Consensus       250 sLa~Iak~RP~  260 (386)
T 3o2t_A          250 SLANIARQRPM  260 (386)
T ss_dssp             HHHHHHHHSGG
T ss_pred             HHHHHHHhcHH
Confidence            77777765443

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=89.52  E-value=1.9  Score=48.20  Aligned_cols=135  Identities=12%  Similarity=0.132  Sum_probs=79.7

Q ss_pred             HHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhh-HHHHHhcCcHHHHHHhhcCC-CccHH--HHHHHHHHHHHHhhchh
Q 015496          219 SKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAG-QEMFYVEAGDLMLQDILGNS-SFEIR--LHRKAVSLVGDLAKCQL  292 (405)
Q Consensus       219 p~Ll~LL~s~--~~~v~~kAl~ALS~lir~~~~~-~~~f~~~gGi~~L~~lL~s~-~~~~k--l~~kA~~lLs~L~~~~~  292 (405)
                      +.|-+.+.++  +=..++.++||+|++..+-.+. ...|+ ...++.|+.++... ..+.+  ++.-++|+++..+..- 
T Consensus       454 ~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl-  531 (1023)
T 4hat_C          454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFL-  531 (1023)
T ss_dssp             HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHH-
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHH-
Confidence            3444444432  3366899999999998764433 22332 34667788877531 11333  4445779998876531 


Q ss_pred             ccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHH--hcCCchHHHHHHHHHHHH
Q 015496          293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK--DFCGLDTALERLRQQLQE  364 (405)
Q Consensus       293 ~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~--~~~Gl~~~L~~L~~~~~~  364 (405)
                       ..+++   .+  ..+++.|.+.+..+++.+++.|++++.+|++   +|+..+.  +.+...|.+..+.+.+..
T Consensus       532 -~~~~~---~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~  596 (1023)
T 4hat_C          532 -KAHWN---FL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQK  596 (1023)
T ss_dssp             -HHCHH---HH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHH
T ss_pred             -hccHH---HH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHH
Confidence             01111   11  2355556666766778999999999999985   4666653  122334555555554444

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=87.58  E-value=5.4  Score=39.60  Aligned_cols=183  Identities=14%  Similarity=0.197  Sum_probs=125.1

Q ss_pred             HHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhc-CCC
Q 015496          151 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSF  229 (405)
Q Consensus       151 ~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~-s~~  229 (405)
                      .+++|-|--|.++-+-.+-|++..|+..+-...+.++.++-...+..|-.++-.-.-+..  --...+|.+++.+. +++
T Consensus       261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~e  338 (619)
T 3c2g_A          261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPD  338 (619)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCC
Confidence            467777777777777777899999999999999999999999999888876643211110  01367899988885 566


Q ss_pred             HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcC-CC----ccHHHHHHHHHHHHHHhhch---h----ccCCC
Q 015496          230 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-SS----FEIRLHRKAVSLVGDLAKCQ---L----ENMHK  297 (405)
Q Consensus       230 ~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s-~~----~~~kl~~kA~~lLs~L~~~~---~----~~~~~  297 (405)
                      +++...-..-|||.+.|..+..+.-+..|++..|-..+.. +.    .+..-+..||..++|-.+.-   +    +..+.
T Consensus       339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG  418 (619)
T 3c2g_A          339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG  418 (619)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred             cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence            7888888999999999999999988999999999888642 11    23334556777776644320   0    11111


Q ss_pred             ----------CcchhHHhCCcHHHHHHhccCC--C----hHHHHHHHHHHHHHh
Q 015496          298 ----------VEPPLFRDRFFLKSVVDLTASA--D----LDLQEKALAAIKNLL  335 (405)
Q Consensus       298 ----------~~~~~l~~~g~l~~Lv~LL~~~--D----~~v~E~al~aL~~L~  335 (405)
                                ...-.|++..+++.|..+|..+  |    .+++...++...-++
T Consensus       419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl  472 (619)
T 3c2g_A          419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL  472 (619)
T ss_dssp             CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence                      1122466678888888887764  2    234555555444443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=87.08  E-value=7  Score=36.06  Aligned_cols=145  Identities=14%  Similarity=0.006  Sum_probs=93.1

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH--HH-HHcCc-HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh---H
Q 015496          179 LVGQLNHPDTDIRKISAWILGKASQNNPLVQK--QV-LELGA-LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---Q  251 (405)
Q Consensus       179 Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~--~v-le~G~-lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~---~  251 (405)
                      |-.-|.|.+=..|..|..-|..+.++++....  .. ...+. .+.+-+.+.+.+..+..+++-+|..++......   .
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            45678889999999999999998887664322  11 12333 344556777778889999999999988754321   1


Q ss_pred             HHHH--hcCcHHHHHH-hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHH
Q 015496          252 EMFY--VEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL  328 (405)
Q Consensus       252 ~~f~--~~gGi~~L~~-lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al  328 (405)
                      ..+.  -...++.|+. ++.+.  ..+++..+..++..++..    ..+  .     ..++..+...+.+.++.++..++
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~----~~~--~-----~~~~e~l~~~l~~Knpkv~~~~l  160 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGL----DTS--I-----TQSVELVIPFFEKKLPKLIAAAA  160 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHT----SSS--S-----HHHHHHHGGGGGCSCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHh----cCc--H-----HHHHHHHHHHHhccCHHHHHHHH
Confidence            2221  1233455553 46654  567888888888887742    111  0     12456677778888999999888


Q ss_pred             HHHHHHhc
Q 015496          329 AAIKNLLQ  336 (405)
Q Consensus       329 ~aL~~L~~  336 (405)
                      ..|..++.
T Consensus       161 ~~l~~~l~  168 (278)
T 4ffb_C          161 NCVYELMA  168 (278)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887764

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=86.79  E-value=9.8  Score=36.45  Aligned_cols=147  Identities=13%  Similarity=0.008  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL  207 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~--Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~  207 (405)
                      ..++...+..+.+ ...+..+.-++.-+.++........-+...  ..+..+..++.+++..+|..++.++-|++--+-+
T Consensus       146 ~~l~~~l~~~~~~-~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~  224 (304)
T 3ebb_A          146 AQFSSHLINLLNP-KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHK  224 (304)
T ss_dssp             HHHHHHHHHTTCT-TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcCC-CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhh
Confidence            3445444454443 335667888899999988776544444332  1234444555668999999999999998853111


Q ss_pred             h--HHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015496          208 V--QKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA  280 (405)
Q Consensus       208 ~--Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA  280 (405)
                      .  .+..  .-.+..+..++.. .+.+....++-|||+++...+...+.....|.-..+..+.+.+ .+.|+..-+
T Consensus       225 ~~~~~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~-~~~kv~~~~  297 (304)
T 3ebb_A          225 DHNIEGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVS-EPAKVSECC  297 (304)
T ss_dssp             SCCHHHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCC-SSHHHHHHH
T ss_pred             cCCchHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCC-CchhHHHHH
Confidence            0  0111  1145555566654 3467788999999999977555444444455555566655553 366665543

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=86.63  E-value=17  Score=40.91  Aligned_cols=109  Identities=13%  Similarity=0.061  Sum_probs=74.0

Q ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcC-
Q 015496          127 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQN-  204 (405)
Q Consensus       127 ~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqN-  204 (405)
                      |-|.+.+.+++..+-++  +.+.|..|.+-|..+-.+.         ++|..+..+|. +.++.+|..|+.+|-+..+. 
T Consensus        24 ~~Dv~~Le~lv~~ly~p--~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~   92 (1073)
T 3gjx_A           24 KLDINLLDNVVNCLYHG--EGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTR   92 (1073)
T ss_dssp             CCSHHHHHHHHHTTTCS--SHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence            33566666777776665  4677888888888776554         36787778775 46899999999999999874 


Q ss_pred             ---ChHhHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 015496          205 ---NPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN  246 (405)
Q Consensus       205 ---N~~~Q~~vle~G~lp~Ll~LL~s~-----~~~v~~kAl~ALS~lir~  246 (405)
                         -|..+...++...+..+.+...++     ++.++.|..-+++.+++.
T Consensus        93 W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~  142 (1073)
T 3gjx_A           93 WKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ  142 (1073)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHH
Confidence               244555566666666666654432     345667777777777654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=86.34  E-value=2.1  Score=36.75  Aligned_cols=68  Identities=12%  Similarity=0.127  Sum_probs=55.0

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSL  243 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~LL~s------~~~~v~~kAl~ALS~l  243 (405)
                      +..|.+-|++.++.++..|..+|-++++| -+.++..|.....+..|++++..      .+..|+.|.+.-|-.-
T Consensus        40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W  114 (148)
T 1mhq_A           40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW  114 (148)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence            44555667899999999999999999999 56788888888999999999974      3568888877665554

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=85.97  E-value=2.1  Score=37.40  Aligned_cols=67  Identities=13%  Similarity=0.173  Sum_probs=52.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSS  242 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~  242 (405)
                      +..|.+-|++.++.++..|..+|-.+++| -+.++..|.....+..|++++.. .++.|+.|++..|-.
T Consensus        54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~  122 (163)
T 1x5b_A           54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVE  122 (163)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            33455667889999999999999999999 46778777777888889998875 456888887765544

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=85.90  E-value=24  Score=34.39  Aligned_cols=182  Identities=10%  Similarity=0.060  Sum_probs=126.4

Q ss_pred             HHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC---cHHHHHHhhcCC
Q 015496          152 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKMVKSS  228 (405)
Q Consensus       152 ~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G---~lp~Ll~LL~s~  228 (405)
                      .+-.-|++++.....|.-+...+.+..+.++...++=+|-..|...+-.+-..+...-..++..+   .+...-+||.++
T Consensus       142 ~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~  221 (341)
T 1upk_A          142 NCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE  221 (341)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence            33444555555555566566666677788888999999999999999999888887777777654   466777899998


Q ss_pred             CHHHHHHHHHHHHHHhcC--ChhhHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          229 FVEEAVKALYTVSSLIRN--NLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       229 ~~~v~~kAl~ALS~lir~--~~~~~~~f~~-~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                      +=-++.+++--||.++-+  |......++. ..-+..++.+|+++  +-.+|..|...+--++.++  +-++.....+..
T Consensus       222 NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~--sk~Iq~EAFhVFKvFVANP--~K~~~I~~IL~~  297 (341)
T 1upk_A          222 NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK--SRNIQFEAFHVFKVFVANP--NKTQPILDILLK  297 (341)
T ss_dssp             SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHCS--SCCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc--hhchhhhhhhheeeeeeCC--CCChHHHHHHHH
Confidence            877899999999998765  5555555554 35688999999987  4567889998888777642  233344455544


Q ss_pred             C--CcHHHHHHhccCC--ChHHHHHHHHHHHHHhcC
Q 015496          306 R--FFLKSVVDLTASA--DLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       306 ~--g~l~~Lv~LL~~~--D~~v~E~al~aL~~L~~~  337 (405)
                      +  .++..|-++....  |.++.+.=...+..+...
T Consensus       298 Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L  333 (341)
T 1upk_A          298 NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL  333 (341)
T ss_dssp             THHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence            3  6666666665533  555655444445555443

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=85.84  E-value=2.1  Score=37.76  Aligned_cols=69  Identities=16%  Similarity=0.141  Sum_probs=55.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHh
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLI  244 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s------~~~~v~~kAl~ALS~li  244 (405)
                      +..|.+-|++.++.++..|..+|-++++|- +.++..|.....+..|++++..      .+..|+.|++..|-.-.
T Consensus        52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  127 (171)
T 1juq_A           52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT  127 (171)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence            445666778999999999999999999994 5678778888899999999963      24688888877666543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=85.62  E-value=2  Score=36.52  Aligned_cols=68  Identities=15%  Similarity=0.176  Sum_probs=52.5

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL  243 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~l  243 (405)
                      +..|.+-|.+.++.++..|..+|-++++|- +..+..|.....+..|+++++..++.|+.+.+..|-+-
T Consensus        44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W  112 (140)
T 3ldz_A           44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEW  112 (140)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            445566678899999999999999999984 55666666667788888888767788888876655543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=84.95  E-value=15  Score=37.61  Aligned_cols=121  Identities=13%  Similarity=0.107  Sum_probs=79.4

Q ss_pred             CHHHHHHHHHHHHHccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496          146 SLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  224 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~-iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L  224 (405)
                      +...|.-|.+.+-.+... .+.++.     .+..++.++...+..||.+|..-|..+|.+ ..+.      .....|.+|
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~------kiaDvL~Ql  108 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP------RVADILTQL  108 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH------HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh------hHHHHHHHH
Confidence            345566666666655433 233333     455666677777889999999999999987 3222      245788999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH-HHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015496          225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM-LQDILGNSSFEIRLHRKAVSLVGDLAK  289 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~-L~~lL~s~~~~~kl~~kA~~lLs~L~~  289 (405)
                      |.+++.......=.+|-++.+.++.+        -+.. +.++..+   +..+|.+++.+|..=..
T Consensus       109 Lqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~---~e~~Rer~lkFi~~kl~  163 (507)
T 3u0r_A          109 LQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQG---EDIVRERAIKFLSTKLK  163 (507)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHS---CHHHHHHHHHHHHHHGG
T ss_pred             HhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHccc---chHHHHHHHHHHHHHHh
Confidence            99988776777777888888877643        2222 2333333   45688888888776554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=84.06  E-value=17  Score=34.09  Aligned_cols=141  Identities=14%  Similarity=0.054  Sum_probs=87.8

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc----CChhhHHHHH
Q 015496          180 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR----NNLAGQEMFY  255 (405)
Q Consensus       180 v~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir----~~~~~~~~f~  255 (405)
                      ...|-+.+..-+..|+..|......+++.....++. .++-+.--+.+.+..+..+++-.|..++.    .+....+. -
T Consensus        52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~-e  129 (266)
T 2of3_A           52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE-E  129 (266)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH-H
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH-H
Confidence            445566677888888888888777666443332221 22222212235577787788888777642    11111100 0


Q ss_pred             hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                      ..--+|.|+.=+.+.  ..++|..+-.++..++.-            .--..+.+.+++-+.+.+...++-++..+.++.
T Consensus       130 a~~~lP~LveKlGd~--k~~vR~~~r~il~~l~~v------------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li  195 (266)
T 2of3_A          130 VSAFVPYLLLKTGEA--KDNMRTSVRDIVNVLSDV------------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYI  195 (266)
T ss_dssp             HHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHH------------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHHH------------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            011357777777765  466888888888777631            112357778888899999999999999998887


Q ss_pred             c
Q 015496          336 Q  336 (405)
Q Consensus       336 ~  336 (405)
                      .
T Consensus       196 ~  196 (266)
T 2of3_A          196 T  196 (266)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=83.21  E-value=0.5  Score=44.12  Aligned_cols=44  Identities=16%  Similarity=0.145  Sum_probs=27.5

Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHH
Q 015496          178 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYT  239 (405)
Q Consensus       178 ~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~A  239 (405)
                      .+..+++++++.||..|+..+.                  .+.|..++++++..||..+...
T Consensus        78 ~l~~L~~D~~~~VR~~aA~~L~------------------~~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A           78 ALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             GGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHHccCcCHHHHHHHHHHCC------------------HHHHHHHHcCCCHHHHHHHHHh
Confidence            4556778888999988886431                  1345555655566666555553

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=82.60  E-value=0.46  Score=44.36  Aligned_cols=21  Identities=19%  Similarity=0.102  Sum_probs=15.3

Q ss_pred             HHHHHhcCCCCHHHHHHHHHH
Q 015496          177 SVLVGQLNHPDTDIRKISAWI  197 (405)
Q Consensus       177 ~~Lv~lL~s~~~~Ir~~Aa~~  197 (405)
                      +.|..+++.+++.||..++.-
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~  121 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADR  121 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHh
Confidence            346667778888888887763

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=82.22  E-value=7.1  Score=33.50  Aligned_cols=70  Identities=16%  Similarity=0.106  Sum_probs=54.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhc
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIR  245 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s------~~~~v~~kAl~ALS~lir  245 (405)
                      +..|.+-|.+.++.++..|..+|-++++|- +.++..|.....+..|++++..      .+..|+.|.+..|-+-..
T Consensus        50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            445556678899999999999999999985 3456777777889999999974      357888888776665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	3e-18
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-06
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-06

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (201), Expect = 3e-18
 Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 13/263 (4%)

Query: 116 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG 175
           E++++   L+  S          +        ++ + AL+ L  L E +DNA D  +L G
Sbjct: 3   EVEQMKSCLRVLSQPMPPTAGEAE---QAADQQEREGALELLADLCENMDNAADFCQLSG 59

Query: 176 LSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEA 233
           + +LVG+ L      +R  +A ++G  SQN   +Q+QVL LGAL KL++++   +     
Sbjct: 60  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR 119

Query: 234 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 293
           VKAL+ +S L+R   AG   F    G  +L   +     ++    K+  L+ +L     E
Sbjct: 120 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL--KVKSAFLLQNLLVGHPE 177

Query: 294 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL-RTTEALVLKDFCGLD 352
           +              ++ +V L  +      E  L A+ +L+           +   GL+
Sbjct: 178 HKGT-----LCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLE 232

Query: 353 TALERLRQQLQEVMLEEDQRDYA 375
             L    Q LQ+    +++ ++ 
Sbjct: 233 ELLRHRCQLLQQHEEYQEELEFC 255

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 15/107 (14%), Positives = 43/107 (40%)

Query: 165 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 224
                + +LGG+  LV  L  P+ ++++ +A  L      +   + +      + + + +
Sbjct: 35  SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94

Query: 225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 271
           ++ +   E  K L  +   + +    +E    +A  ++   ++   S
Sbjct: 95  LRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFS 141

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 8/132 (6%)

Query: 117 IKELMEKLKTPSDAQLIQIAIDDLNNSTL----SLEDSQRALQELLILVEPIDNANDLSK 172
           I  L++ L         + ++       +      E  +     L IL   + N   +  
Sbjct: 399 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG 458

Query: 173 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---F 229
           L  + + V  L  P  +I++++A +L + +Q +    + +   GA + L +++ S     
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGV 517

Query: 230 VEEAVKALYTVS 241
              A   L+ +S
Sbjct: 518 ATYAAAVLFRMS 529

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.98
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.88
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.86
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.83
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.76
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.64
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.23
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.23
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.14
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.11
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.01
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.96
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.95
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.92
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.84
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	97.82
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.64
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.55
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.41
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.18
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.12
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	96.99
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	96.9
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.27
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.11
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.96
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.85
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	94.83
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.71
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	92.66
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.44
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	91.82
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	90.92
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	89.8
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	88.46
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	86.74
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	85.34
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	83.76

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.9e-31  Score=248.17  Aligned_cols=249  Identities=25%  Similarity=0.324  Sum_probs=208.2

Q ss_pred             HHHHHHHHHHHhhcCC----------CCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHH
Q 015496          129 DAQLIQIAIDDLNNST----------LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-QLNHPDTDIRKISAWI  197 (405)
Q Consensus       129 d~~lmk~al~~L~~~~----------~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~-lL~s~~~~Ir~~Aa~~  197 (405)
                      |.+.||+++.++.++.          .+.+.+..|++.|.+|+++.|||+.|+++||+++++. +|+++++++|..|+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~   82 (264)
T d1xqra1           3 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQL   82 (264)
T ss_dssp             HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHH
Confidence            6788999999998873          3567889999999999999999999999999999986 7789999999999999


Q ss_pred             HHHHhcCChHhHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHH
Q 015496          198 LGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRL  276 (405)
Q Consensus       198 Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s-~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl  276 (405)
                      |+++++|||.+|..+++.|++|.|++++.+ .++.++.+|++||+++++++++++..|...||++.|+.+++++  +.++
T Consensus        83 L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~~  160 (264)
T d1xqra1          83 IGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKL  160 (264)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chHH
Confidence            999999999999999999999999999975 4578999999999999999999999999999999999999986  6789


Q ss_pred             HHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHH
Q 015496          277 HRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALE  356 (405)
Q Consensus       277 ~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~  356 (405)
                      +.+++++|.+|+.+     +++....+.+.|+++.|+.+|.++|+++++.++.+|.+|+......+..+. ..++ ....
T Consensus       161 ~~~a~~~L~~l~~~-----~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~-~~~l-~~~~  233 (264)
T d1xqra1         161 KVKSAFLLQNLLVG-----HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPEL-GLEE  233 (264)
T ss_dssp             HHHHHHHHHHHHHH-----CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGG-CHHH
T ss_pred             HHHHHHHHHHHHhc-----cHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHH-Hhhh-hHHH
Confidence            99999999999963     567788899999999999999999999999999999999988776666665 3332 1122


Q ss_pred             HHHHHHHHhhhchhhhhhHHHHHHHHHHHHHHH
Q 015496          357 RLRQQLQEVMLEEDQRDYAMDVEALRREVELIF  389 (405)
Q Consensus       357 ~L~~~~~~l~~~~~q~~~~~d~~~l~~e~~~~~  389 (405)
                      .|+ ++.....  ...+|...++.++...+..|
T Consensus       234 ~L~-~~~~~~~--~~~~~~e~~~~~~~ll~~~~  263 (264)
T d1xqra1         234 LLR-HRCQLLQ--QHEEYQEELEFCEKLLQTCF  263 (264)
T ss_dssp             HHH-HHHHHHT--TCGGGHHHHHHHHHHHHHHC
T ss_pred             HHH-HHHHhcc--chHHHHHHHHHHHHHHHHhc
Confidence            222 2222222  12235555566655555544

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=5.7e-21  Score=192.72  Aligned_cols=259  Identities=14%  Similarity=0.164  Sum_probs=214.7

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHccCCC--CchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHhHH
Q 015496          134 QIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~i--DnA~~~~~~Ggi~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      .+.+..+.+.  +.+.+..|+..+..++...  ...+.+++.|++|+|+.+|.+ .++.+|..|+|+|++++.+++..+.
T Consensus        79 ~~~~~~~~s~--~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~  156 (503)
T d1wa5b_          79 PQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK  156 (503)
T ss_dssp             HHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3344444333  6678889999999877443  346789999999999999975 6788999999999999999999999


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      .+.+.|++|.|+.++.+++.+++..|+|+|+|++.+++..++.+.+.||++.|+.++.+.  +..+++.++|++.+|+.+
T Consensus       157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~--~~~~~~~~~~~l~nl~~~  234 (503)
T d1wa5b_         157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCRG  234 (503)
T ss_dssp             HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHCC
T ss_pred             HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC--CHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999886  567899999999999964


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH----HH----
Q 015496          291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ----QL----  362 (405)
Q Consensus       291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~----~~----  362 (405)
                      .     +.........++++.++.++.++|.+++..++++|.+|+....+....+. ..|+.+.+..+..    ..    
T Consensus       235 ~-----~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~v~~~a  308 (503)
T d1wa5b_         235 K-----KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSHESTLVQTPA  308 (503)
T ss_dssp             S-----SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHHH
T ss_pred             C-----ccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhh-hhhhhhhhhhcccCCchhhhhhH
Confidence            2     22223345568999999999999999999999999999988777777777 5666555544441    11    


Q ss_pred             ----HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          363 ----QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       363 ----~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                          ..+.. ++++++.+.+.+.++....++.+.+ ..|++++||+
T Consensus       309 l~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~-~~i~~~~~~~  353 (503)
T d1wa5b_         309 LRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK-ENIKKEACWT  353 (503)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCC-HHHHHHHHHH
Confidence                11334 6778999999999999999999888 7999999996

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=2.1e-20  Score=182.98  Aligned_cols=262  Identities=17%  Similarity=0.223  Sum_probs=214.7

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc--hhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHhH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQ  209 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn--A~~~~~~Ggi~~Lv~lL~s-~~~~Ir~~Aa~~Lg~~aqNN~~~Q  209 (405)
                      +++.++.+.++  +++.+..|+..+..++....|  ...+.+.|++|+|+++|++ +++++|..|+|+|+++++.+++.+
T Consensus        15 i~~lv~~l~s~--~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~   92 (434)
T d1q1sc_          15 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT   92 (434)
T ss_dssp             HHHHHHHHTSS--CHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence            45556666655  688899999999988755554  4678999999999999964 678999999999999999999999


Q ss_pred             HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCC---ccHHHHHHHHHHHHH
Q 015496          210 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS---FEIRLHRKAVSLVGD  286 (405)
Q Consensus       210 ~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~---~~~kl~~kA~~lLs~  286 (405)
                      ..+++.|++|.|+.+|.+++.+++..|+++|++++.+++..+..+.+.||++.|+.++..+.   ......+.+++++++
T Consensus        93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~  172 (434)
T d1q1sc_          93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  172 (434)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999997653   234567889999999


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----H
Q 015496          287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----L  362 (405)
Q Consensus       287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~  362 (405)
                      ++.+     .+.........++++.++.++.++|.++++.++++|.+|+..+.+....+. ..|+.+.+..+..+    +
T Consensus       173 ~~~~-----~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~Lv~ll~~~~~~~  246 (434)
T d1q1sc_         173 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV-KKGVVPQLVKLLGATELPI  246 (434)
T ss_dssp             HTCC-----CTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHH-TTTCHHHHHHHHTCSCHHH
T ss_pred             Hhhc-----ccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHh-hcccchhcccccccchhhh
Confidence            9863     222333444568899999999999999999999999999988766666666 66666666655521    1


Q ss_pred             --------HHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          363 --------QEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       363 --------~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                              ..+.. ++.++.+..+.+.++...+++.+.+ ..+++.++|.
T Consensus       247 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~-~~v~~~a~~~  295 (434)
T d1q1sc_         247 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK-TNIQKEATWT  295 (434)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSS-HHHHHHHHHH
T ss_pred             hhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccc-hhhhHHHHHH
Confidence                    11333 5678889989999999999998888 7899999885

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=8.7e-20  Score=183.94  Aligned_cols=260  Identities=15%  Similarity=0.176  Sum_probs=217.9

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHH
Q 015496          134 QIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV  212 (405)
Q Consensus       134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~i-DnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~v  212 (405)
                      ...+..+... .+.+-+..|+..|.+++... +....+...|+++.++.+|.+++.+++..|+|+|++++..++..+..+
T Consensus       122 ~~Lv~~l~~~-~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l  200 (503)
T d1wa5b_         122 PRLVEFMREN-QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV  200 (503)
T ss_dssp             HHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3445555442 35667888999999988654 456778889999999999999999999999999999999999999999


Q ss_pred             HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh
Q 015496          213 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL  292 (405)
Q Consensus       213 le~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~  292 (405)
                      ++.|++++|+.++.+....++..++|+|++++++..+........++++.|..++.++  +..++..++|++++|+.   
T Consensus       201 ~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~--d~~~~~~~~~~l~~l~~---  275 (503)
T d1wa5b_         201 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSD---  275 (503)
T ss_dssp             HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHS---
T ss_pred             HhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHhhcc---
Confidence            9999999999999998889999999999999998766666666789999999999886  56789999999999985   


Q ss_pred             ccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHHH----HHH----
Q 015496          293 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ----LQE----  364 (405)
Q Consensus       293 ~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~~----~~~----  364 (405)
                        .+++....+.+.|+++.++.++.+++..++..++.+|.+++.+.+.....+. ..|+.+.+..|..+    ++.    
T Consensus       276 --~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~-~~~~l~~l~~ll~~~~~~i~~~~~~  352 (503)
T d1wa5b_         276 --GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKENIKKEACW  352 (503)
T ss_dssp             --SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             --CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhh-ccchHHHHHHHhcCCCHHHHHHHHH
Confidence              2445566788899999999999999999999999999999998777777777 67777777766522    111    


Q ss_pred             ----hhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchhcc
Q 015496          365 ----VML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLCWN  403 (405)
Q Consensus       365 ----l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~~~  403 (405)
                          +.. +.++..++.+.+.++...+++.+.. ..+++++||.
T Consensus       353 ~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~-~~v~~~a~~~  395 (503)
T d1wa5b_         353 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAE-YKTKKEACWA  395 (503)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC-HHHHHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHccccchhHHhcccCC-hhHHHHHHHH
Confidence                222 5667888888899999999998888 6899999995

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.4e-17  Score=168.35  Aligned_cols=199  Identities=15%  Similarity=0.142  Sum_probs=169.3

Q ss_pred             HHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHH
Q 015496          131 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK  210 (405)
Q Consensus       131 ~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~  210 (405)
                      ..+...+..|.+.+ +.+.+..|...|.+++.+.++...+++.||+++|+.+|++++++++..|+++|++++.+++..++
T Consensus        59 ~~v~~l~~~L~~~~-~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~  137 (529)
T d1jdha_          59 QMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM  137 (529)
T ss_dssp             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred             hHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhh
Confidence            45566667776654 56788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          211 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       211 ~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      .+.+.|++|+|+.+|++++++++..++++|++++.+++..+..+...||++.|+.++..+ ....++..+++++.+++. 
T Consensus       138 ~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~~~~~l~~ls~-  215 (529)
T d1jdha_         138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSV-  215 (529)
T ss_dssp             HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTT-
T ss_pred             HHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhh-hhHHHHHHHHHHHhhhhc-
Confidence            999999999999999999999999999999999999999999999999999999999765 356788999999999974 


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                           +++....+.+.|.++.|+.++.+++.++++.++.++.++...
T Consensus       216 -----~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~  257 (529)
T d1jdha_         216 -----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDA  257 (529)
T ss_dssp             -----STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTT
T ss_pred             -----cccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccc
Confidence                 345555666667777777766666666666666666666543

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.9e-17  Score=160.27  Aligned_cols=208  Identities=15%  Similarity=0.174  Sum_probs=179.6

Q ss_pred             CHHHHHHHHHHHHHccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHh
Q 015496          146 SLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM  224 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iD-nA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~L  224 (405)
                      +++.+..++..|.+++...+ ....+...|+++.|+.++.+++++++..|+++|++++.+++..+..+++.|+++.|+.+
T Consensus       201 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~l  280 (434)
T d1q1sc_         201 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL  280 (434)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH
T ss_pred             ccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHh
Confidence            56778889999999887654 44556778999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015496          225 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR  304 (405)
Q Consensus       225 L~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~  304 (405)
                      +++++++++..|+++|++++++++.....+.+.|+++.++.++.++  +.+++..|++++.+++..    .+++....+.
T Consensus       281 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~--~~~v~~~a~~~l~nl~~~----~~~~~~~~l~  354 (434)
T d1q1sc_         281 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSG----GTVEQIVYLV  354 (434)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHHHHH
T ss_pred             hcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc--ChHHHHHHHHHHHHHHhc----CCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999886  678999999999999864    3455667788


Q ss_pred             hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC-----h-hhHHHHHhcCCchHHHHHHHH
Q 015496          305 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR-----T-TEALVLKDFCGLDTALERLRQ  360 (405)
Q Consensus       305 ~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~-----~-~~~~~v~~~~Gl~~~L~~L~~  360 (405)
                      +.|+++.|+++|..+|.+++..++.+|.+|....     . ..+..+. ..|+.+.++.|+.
T Consensus       355 ~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~~  415 (434)
T d1q1sc_         355 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE-ECGGLDKIEALQR  415 (434)
T ss_dssp             HTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH-HTTSHHHHHHHHT
T ss_pred             HCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH-HcCCHHHHHHHHc
Confidence            9999999999999999999999999999987521     1 1244555 5666567776653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.3e-17  Score=155.25  Aligned_cols=178  Identities=15%  Similarity=0.162  Sum_probs=145.2

Q ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496          175 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  254 (405)
Q Consensus       175 gi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f  254 (405)
                      .+|.||++|+++++++|..|+++|++++.+|++.|+.+.+.|+||+|+++|++++++++..|++||.+++.++++.+..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh---------------ccCC
Q 015496          255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL---------------TASA  319 (405)
Q Consensus       255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~L---------------L~~~  319 (405)
                      .+.||++.|+.++.+. .+..++..|++++.+|+..      +.....+...|+.+.+..+               ....
T Consensus        83 ~~~g~v~~li~~l~~~-~~~~~~~~a~~~l~~l~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  155 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSST------DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV  155 (457)
T ss_dssp             HHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTS------SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred             HHCCChHHHHHHHhcc-CcHHHHHHHHHHHHHHHhh------hhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccc
Confidence            9999999999999865 4677999999999999852      2333344444443333222               2445


Q ss_pred             ChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH
Q 015496          320 DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ  360 (405)
Q Consensus       320 D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~  360 (405)
                      +.++++.++.++..+..... .++......|+.+.+..+.+
T Consensus       156 ~~~v~~~a~~~l~~~~~~~~-~~~~~~~~~~~i~~l~~ll~  195 (457)
T d1xm9a1         156 DPEVFFNATGCLRNLSSADA-GRQTMRNYSGLIDSLMAYVQ  195 (457)
T ss_dssp             CHHHHHHHHHHHHHHTTSHH-HHHHHTTSTTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCch-HHHHHHHHhccHHHHHHHHh
Confidence            88999999999999988754 44444446776666655543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.7e-15  Score=152.82  Aligned_cols=214  Identities=15%  Similarity=0.134  Sum_probs=177.8

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDn-A~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      +...+..|.++  +++.+..|+..|.+++.+.++ ...+...||+++|+.+|++++++++..|+++|++++.+++..+..
T Consensus       103 i~~Li~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  180 (529)
T d1jdha_         103 IPALVKMLGSP--VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI  180 (529)
T ss_dssp             HHHHHHHTTCS--CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCC--CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHH
Confidence            34455556543  568888999999988766554 456778999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015496          212 VLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC  290 (405)
Q Consensus       212 vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~  290 (405)
                      +.+.|+++.|+.++.+. ...++..+.++++++.. ++.....|++.||++.|..++.++  +.+++..+++++.++...
T Consensus       181 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~l~~ls~~  257 (529)
T d1jdha_         181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDA  257 (529)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHHHHHHTT
T ss_pred             HHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhccc--chhhhhhhhhHHHhcccc
Confidence            99999999999999754 46788899999999875 577888999999999999999986  677899999999999742


Q ss_pred             hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHH
Q 015496          291 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR  359 (405)
Q Consensus       291 ~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~  359 (405)
                           ..   ......|+++.|++++.++|..+++.++.+|.+|+..+...+..+.+.+|+...+..+.
T Consensus       258 -----~~---~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~  318 (529)
T d1jdha_         258 -----AT---KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL  318 (529)
T ss_dssp             -----CT---TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             -----cc---chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHH
Confidence                 11   12233588999999999999999999999999999887777777776666666665554

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.3e-15  Score=143.65  Aligned_cols=265  Identities=11%  Similarity=0.029  Sum_probs=184.6

Q ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          133 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       133 mk~al~~L~~~~~t~e~k~~AL~~L~~Lve-~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      |..+++.|.++  +++.+..|...|.+++. +-++.+.+.+.||+|+|+++|+++++++|..|+++|++++.+|++.+..
T Consensus         4 ip~lv~~L~~~--~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHHHhCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            55677888765  57899999999999984 6778999999999999999999999999999999999999999999999


Q ss_pred             HHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhh----------------------------------------
Q 015496          212 VLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAG----------------------------------------  250 (405)
Q Consensus       212 vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~~~~~----------------------------------------  250 (405)
                      +.+.|+++.|++++.+. +..++..|+++|.+++.+....                                        
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            99999999999999764 5678888888888887653211                                        


Q ss_pred             ---------------HHHHH-hcCcHHHHHHhhcCCC-------------------------------------------
Q 015496          251 ---------------QEMFY-VEAGDLMLQDILGNSS-------------------------------------------  271 (405)
Q Consensus       251 ---------------~~~f~-~~gGi~~L~~lL~s~~-------------------------------------------  271 (405)
                                     ...+. ..|+++.|+.++++..                                           
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence                           11111 1344566665542100                                           


Q ss_pred             ------------------------------------------------------ccHHHHHHHHHHHHHHhhchhccCCC
Q 015496          272 ------------------------------------------------------FEIRLHRKAVSLVGDLAKCQLENMHK  297 (405)
Q Consensus       272 ------------------------------------------------------~~~kl~~kA~~lLs~L~~~~~~~~~~  297 (405)
                                                                            .+..++..+.+++.+++.........
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                                  01122223333344433210000000


Q ss_pred             CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHHHHHhcCCchHHHHHHHH-----------------
Q 015496          298 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ-----------------  360 (405)
Q Consensus       298 ~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~~v~~~~Gl~~~L~~L~~-----------------  360 (405)
                      .....+.+.|+++.|+.+|.+++.++++.++.++.+|+.... .+..+. ..|+.+.+..|..                 
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~a~~  399 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-LHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-GHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-HHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHHHHH
Confidence            012345567999999999999999999999999999998643 455565 5677666655531                 


Q ss_pred             HHHHhhh-chhhhhhHHHHHHHHHHHHHHHhhhccccccchh
Q 015496          361 QLQEVML-EEDQRDYAMDVEALRREVELIFFRKLGKVGTRLC  401 (405)
Q Consensus       361 ~~~~l~~-~~~q~~~~~d~~~l~~e~~~~~~~kl~~i~~~~~  401 (405)
                      -+..+.. +.+.++...+.+.++...+++....-..+.+-||
T Consensus       400 ~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~  441 (457)
T d1xm9a1         400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR  441 (457)
T ss_dssp             HHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHH
Confidence            1122333 4556777788899999998887655345555554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-15  Score=140.88  Aligned_cols=167  Identities=16%  Similarity=0.033  Sum_probs=144.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHH
Q 015496          185 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML  263 (405)
Q Consensus       185 s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~-LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L  263 (405)
                      +.+.+.|..|+.+|.+++.+ ......+.+.|++++|+. +++++++++|..|+++|++++++++..+..+.+.||++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            45678899999999999964 667888999999999986 7788889999999999999999999999999999999999


Q ss_pred             HHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChhhHH
Q 015496          264 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL  343 (405)
Q Consensus       264 ~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~~~~  343 (405)
                      +.++.++ .+..+++++++++++|+++     ++.....+.+.|.++.|+.+|.+++.+++..++++|.+|+...++.+.
T Consensus       107 v~lL~~~-~~~~v~~~a~~aL~~l~~~-----~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~  180 (264)
T d1xqra1         107 LRLLDRD-ACDTVRVKALFAISCLVRE-----QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG  180 (264)
T ss_dssp             HHHHHHC-SCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHhhcC-CCHHHHHHHHHHHHHHhcc-----chhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHH
Confidence            9999765 3677999999999999963     455667788999999999999999999999999999999987777777


Q ss_pred             HHHhcCCchHHHHHHH
Q 015496          344 VLKDFCGLDTALERLR  359 (405)
Q Consensus       344 ~v~~~~Gl~~~L~~L~  359 (405)
                      .+. ..|+.+.|..|.
T Consensus       181 ~~~-~~~~v~~L~~lL  195 (264)
T d1xqra1         181 TLC-SMGMVQQLVALV  195 (264)
T ss_dssp             HHH-HTTHHHHHHHHH
T ss_pred             HHH-HhhhHHHHHHHH
Confidence            777 555555555554

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=5.2e-06  Score=82.95  Aligned_cols=172  Identities=11%  Similarity=0.019  Sum_probs=122.1

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      ....|..+++.+..++.....  .+..-...+.++.+|..+...+|..|+++++.++++....   ......+|.+..++
T Consensus       415 ~~~~r~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~---~~~~~i~~~l~~~~  489 (588)
T d1b3ua_         415 KWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMS  489 (588)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHHHHcCh--HhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHHh
Confidence            445666666666655433211  1111123566778888899999999999999998753221   12334789999999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                      .+++...|..++++++.+....+.   .+.....++.|..+++++  .+.+|..++.++..+...    .++    ....
T Consensus       490 ~~~~~~~R~~~~~~l~~l~~~~~~---~~~~~~ilp~ll~~~~D~--v~nVR~~a~~~l~~i~~~----~~~----~~~~  556 (588)
T d1b3ua_         490 GDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----LDN----STLQ  556 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SCH----HHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCh---HHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHH----cCc----HhHH
Confidence            998888899999999988764332   233445789999999886  567899999999999753    121    2233


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          306 RFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                      ..+.+.+..+++.+|.+|+..|..|+..|+
T Consensus       557 ~~i~~~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         557 SEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            456677778888889999999999998875

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.14  E-value=1.1e-07  Score=76.01  Aligned_cols=109  Identities=9%  Similarity=0.041  Sum_probs=87.8

Q ss_pred             cCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHH
Q 015496          183 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM  262 (405)
Q Consensus       183 L~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~  262 (405)
                      |+++++.||..|+++|+.+.            ..+++.|+++|.+++..+|..|+++|+.+.  .+         +.++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~--~~---------~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE---------RAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC--SH---------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc--hh---------hhHHH
Confidence            56788899999999998753            136789999999999999999999998762  22         24688


Q ss_pred             HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496          263 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK  332 (405)
Q Consensus       263 L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~  332 (405)
                      |..+|+++  +..+|..|+++|..+..                ...++.|..++..+|..++..|+.+|.
T Consensus        58 L~~~l~d~--~~~VR~~a~~aL~~i~~----------------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDD--SGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHC--CTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccc--hhHHHHHHHHHHHHhCc----------------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88999876  56799999999988741                246788889999999999999988764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=0.0001  Score=73.22  Aligned_cols=173  Identities=9%  Similarity=0.025  Sum_probs=128.5

Q ss_pred             CHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496          146 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       146 t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      ....|..|..-+..+....+..   .....++.+..++.++++.+|..|+.+++.+++.-+.   .......+|.+..++
T Consensus       139 ~~~~r~~a~~ll~~~~~~~~~~---~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~  212 (588)
T d1b3ua_         139 WFTSRTSACGLFSVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLA  212 (588)
T ss_dssp             SHHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHh
Confidence            4556777777777776655432   1222467788888999999999999999999986432   233456788899999


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                      ++++..+|..|+.+++.++...+..   .....-++.+..++.++  +.++|..++..+..++..-    .+    ....
T Consensus       213 ~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~~~D~--~~~Vr~~~~~~l~~l~~~~----~~----~~~~  279 (588)
T d1b3ua_         213 SDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAV----GP----EITK  279 (588)
T ss_dssp             TCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHH----CH----HHHH
T ss_pred             cCCchhhHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHhcccc--cHHHHHHHHHhHHHHHHHh----hh----hhhh
Confidence            9888999999999999987654332   11223578888888775  6789999999999988531    11    2334


Q ss_pred             CCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          306 RFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       306 ~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      ..+++.+..++...+.+++..++.++..+...
T Consensus       280 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~  311 (588)
T d1b3ua_         280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN  311 (588)
T ss_dssp             HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            56889999999999999999999999887653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=7.3e-05  Score=66.34  Aligned_cols=131  Identities=10%  Similarity=0.016  Sum_probs=79.6

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496          174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM  253 (405)
Q Consensus       174 Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~  253 (405)
                      .-.+.|+++|+++++.+|..|+.+|+....  +         .++|.|+++++++++.+|..|+.+|+.+..... ....
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~-~~~~   86 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-CEDN   86 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-THHH
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-cccc
Confidence            346677888888888888888888887642  1         357888888888888888888888887743221 1111


Q ss_pred             HHhcCcHHHHHHh-hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015496          254 FYVEAGDLMLQDI-LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK  332 (405)
Q Consensus       254 f~~~gGi~~L~~l-L~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~  332 (405)
                           .++.|... ++++  +..++..++..+..++...     +     .....+++.+...+...++.++..++.++.
T Consensus        87 -----~~~~l~~~~l~d~--~~~vr~~a~~aL~~~~~~~-----~-----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~  149 (276)
T d1oyza_          87 -----VFNILNNMALNDK--SACVRATAIESTAQRCKKN-----P-----IYSPKIVEQSQITAFDKSTNVRRATAFAIS  149 (276)
T ss_dssp             -----HHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHC-----G-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHhcCC--ChhHHHHHHHHHHHHcccc-----c-----hhhHHHHHHHHHHhcCcchHHHHHHHHHHh
Confidence                 12333333 4443  5667888888888876431     1     111123444455555555555554444443


Q ss_pred             H
Q 015496          333 N  333 (405)
Q Consensus       333 ~  333 (405)
                      .
T Consensus       150 ~  150 (276)
T d1oyza_         150 V  150 (276)
T ss_dssp             T
T ss_pred             h
Confidence            3

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.95  E-value=4.1e-06  Score=66.46  Aligned_cols=87  Identities=17%  Similarity=0.201  Sum_probs=71.0

Q ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 015496          174 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM  253 (405)
Q Consensus       174 Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~  253 (405)
                      .++++|+..|+++++.+|..|+++||.+..           .+++|.|+.+|+++++.+|..|++||+.+-  .+     
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i~--~~-----   83 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG--GE-----   83 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC--SH-----
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHhC--cc-----
Confidence            468999999999999999999999997642           236799999999999999999999999872  22     


Q ss_pred             HHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015496          254 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLV  284 (405)
Q Consensus       254 f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lL  284 (405)
                          ..++.|..+++++  +..+|+.|+.+|
T Consensus        84 ----~~~~~L~~ll~d~--~~~vr~~A~~aL  108 (111)
T d1te4a_          84 ----RVRAAMEKLAETG--TGFARKVAVNYL  108 (111)
T ss_dssp             ----HHHHHHHHHTTSC--CTHHHHHHHHHG
T ss_pred             ----chHHHHHHHHcCC--CHHHHHHHHHHH
Confidence                2467888888876  566888887665

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=4.7e-05  Score=80.17  Aligned_cols=150  Identities=14%  Similarity=0.091  Sum_probs=107.8

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-HHHHH
Q 015496          177 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QEMFY  255 (405)
Q Consensus       177 ~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~-~~~f~  255 (405)
                      +.+...+.+++...|..|+.++|.++.+-++.-...+ ...+|.|+..++++++.+|..|+|+||.++....+. .+.+ 
T Consensus       398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-  475 (888)
T d1qbkb_         398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-  475 (888)
T ss_dssp             HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-
T ss_pred             HHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-
Confidence            3334566788999999999999999987543322222 246788999999999999999999999887543222 2222 


Q ss_pred             hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015496          256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL  335 (405)
Q Consensus       256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~  335 (405)
                      -...++.|...+.++  +.+++..|++++.+++..    ..+...+.+.  .+++.++..+...+......+..++.+++
T Consensus       476 ~~~~l~~ll~~l~d~--~~~V~~~a~~al~~l~~~----~~~~l~p~~~--~il~~l~~~l~~~~~~~~~~~~~al~~l~  547 (888)
T d1qbkb_         476 LKPLMTELLKRILDS--NKRVQEAACSAFATLEEE----ACTELVPYLA--YILDTLVFAFSKYQHKNLLILYDAIGTLA  547 (888)
T ss_dssp             TTTHHHHHHHHHSSS--CHHHHHHHHHHHHHHHHH----HTTSSGGGHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH----hhhhhhhHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            235677777777775  578999999999999864    2344444442  46778888888877777777777777776


Q ss_pred             c
Q 015496          336 Q  336 (405)
Q Consensus       336 ~  336 (405)
                      .
T Consensus       548 ~  548 (888)
T d1qbkb_         548 D  548 (888)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=0.00021  Score=67.02  Aligned_cols=200  Identities=13%  Similarity=0.095  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCch--hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL  207 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA--~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~  207 (405)
                      ..++...+..+.+.+.+.+.+..++..+..++......  ........++.+...+.+++++++..++++++.+++..+.
T Consensus       170 ~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  249 (458)
T d1ibrb_         170 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  249 (458)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence            35667777788877778888999999999888665321  1222223466677788899999999999999999987654


Q ss_pred             hHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--------------------------------------
Q 015496          208 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--------------------------------------  249 (405)
Q Consensus       208 ~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~--------------------------------------  249 (405)
                      .-...+.....+.+.....++.+.++..|+..++.++.....                                      
T Consensus       250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  329 (458)
T d1ibrb_         250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  329 (458)
T ss_dssp             GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhh
Confidence            322112222223333444444455555555444443211000                                      


Q ss_pred             -----------------h---HHHHHhc-------CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchh
Q 015496          250 -----------------G---QEMFYVE-------AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPL  302 (405)
Q Consensus       250 -----------------~---~~~f~~~-------gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~  302 (405)
                                       +   ...+...       .-++.+...++++  +.++|.-|+.+++.++..    ..+.....
T Consensus       330 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~----~~~~~~~~  403 (458)
T d1ibrb_         330 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEG----PEPSQLKP  403 (458)
T ss_dssp             TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSS----SCTTTTCT
T ss_pred             hcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHh----cCHhHHHH
Confidence                             0   0000000       1234555556664  677888899999998742    22222111


Q ss_pred             HHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496          303 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       303 l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~  336 (405)
                      +. ..+++.++.+++++++.+|..|+++|+.++.
T Consensus       404 ~l-~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         404 LV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             TT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            11 3588999999999999999999999999875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=0.00069  Score=59.72  Aligned_cols=127  Identities=10%  Similarity=0.017  Sum_probs=85.6

Q ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc
Q 015496          136 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL  215 (405)
Q Consensus       136 al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~  215 (405)
                      .++.|.++  ++..|..|...|..+-.          -..++.|+.+|+++++.+|..|+++|+.+...... ...    
T Consensus        24 L~~~L~d~--~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~~~----   86 (276)
T d1oyza_          24 LFRLLDDH--NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-EDN----   86 (276)
T ss_dssp             HHHHTTCS--SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-HHH----
T ss_pred             HHHHhcCC--CHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-ccc----
Confidence            34555544  57788888888876521          13578999999999999999999999988764332 222    


Q ss_pred             CcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015496          216 GALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL  287 (405)
Q Consensus       216 G~lp~Ll~-LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L  287 (405)
                       .++.|+. +++++++.++..|+++|+.+..+.+.....     .++.+...+.++  +..++..++..+...
T Consensus        87 -~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~~d~--~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          87 -VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITAFDK--STNVRRATAFAISVI  151 (276)
T ss_dssp             -HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHTC
T ss_pred             -hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHhcCc--chHHHHHHHHHHhhc
Confidence             2334443 456677889999999999988765443332     345666666665  556777776665543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.64  E-value=0.00095  Score=67.47  Aligned_cols=201  Identities=10%  Similarity=0.043  Sum_probs=132.0

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHH-------------hcCCHHHHHHhcCCCCHHHHHHH
Q 015496          128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-------------KLGGLSVLVGQLNHPDTDIRKIS  194 (405)
Q Consensus       128 ~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~-------------~~Ggi~~Lv~lL~s~~~~Ir~~A  194 (405)
                      +.++.+..+++++.+...+.+.|..|.-.|.+.+........-.             +......++..|.++++.+|..+
T Consensus        36 ~~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~  115 (861)
T d2bpta1          36 NFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAA  115 (861)
T ss_dssp             CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            45677888899998887788888888888888776543321111             01123456777888999999999


Q ss_pred             HHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhcCC
Q 015496          195 AWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNS  270 (405)
Q Consensus       195 a~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s~~-~~v~~kAl~ALS~lir~~~~~~~~f~~--~gGi~~L~~lL~s~  270 (405)
                      +.+++.++... |.. ++   -..++.|++.+.+++ ..++..|+.+++.++....+..+.+..  ..-+..+...+.+.
T Consensus       116 a~~i~~i~~~~~p~~-~w---peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~  191 (861)
T d2bpta1         116 AQLIAAIADIELPHG-AW---PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQST  191 (861)
T ss_dssp             HHHHHHHHHHHGGGT-CC---HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCcC-ch---HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999998531 100 00   025788888887755 567888999999998765443222221  11223333334444


Q ss_pred             CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015496          271 SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ  336 (405)
Q Consensus       271 ~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~  336 (405)
                      ..+..++..+..++.++...-    ............+++.+...+..++.+++..++.++..++.
T Consensus       192 ~~~~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  253 (861)
T d2bpta1         192 ETSKAVRLAALNALADSLIFI----KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             CCCHHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHH----hHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            346778999999999987531    11111111223467778888999999999999999988875

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.0019  Score=68.94  Aligned_cols=191  Identities=10%  Similarity=0.084  Sum_probs=127.5

Q ss_pred             HHHHHHhhcCCCCHHHHHHHHHHHHHccCCCC--chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHH
Q 015496          134 QIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ  211 (405)
Q Consensus       134 k~al~~L~~~~~t~e~k~~AL~~L~~Lve~iD--nA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~  211 (405)
                      -..++.+.++  +++-|.-|+..|...+.+..  .-++.. ...++.|+.+|+.++++||..|+.+|+.++...+..+. 
T Consensus         6 ~~ll~k~~~~--D~d~R~ma~~dl~~~l~~~~~~~~~~~~-~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~-   81 (1207)
T d1u6gc_           6 SNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSE-RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV-   81 (1207)
T ss_dssp             HHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH-
T ss_pred             HHHHHhcCCC--CHhHHHHHHHHHHHHHhhcccccChHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH-
Confidence            3445555554  57788888888877653311  111111 22578899999999999999999999999976554332 


Q ss_pred             HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015496          212 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD  286 (405)
Q Consensus       212 vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~-----~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~  286 (405)
                         ...++.|+..+.+++...+..+..+|..++..-+..     ....+....++.|...+... .+..++..++..+..
T Consensus        82 ---~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          82 ---ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMAD  157 (1207)
T ss_dssp             ---HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHH
Confidence               245788888887777777777777777776543321     11112222344555555554 467789999999999


Q ss_pred             HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015496          287 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR  338 (405)
Q Consensus       287 L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~  338 (405)
                      ++...    .+...+..  ..+++.++..|.+++..++..|+.+|..++..-
T Consensus       158 l~~~~----g~~l~~~~--~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~  203 (1207)
T d1u6gc_         158 MLSRQ----GGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC  203 (1207)
T ss_dssp             HHHHT----CSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHh----hHhhHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            98642    22222222  247788888999999999999999999998653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.002  Score=60.03  Aligned_cols=202  Identities=9%  Similarity=-0.035  Sum_probs=128.0

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhH------------HHhcCCHHHHHHhcCCCCHHHHHHHH
Q 015496          128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND------------LSKLGGLSVLVGQLNHPDTDIRKISA  195 (405)
Q Consensus       128 ~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~------------~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa  195 (405)
                      +.++.+-.++.++.+...+..-|..|.-.|.+.+...+....            -.+......+++.+.++++.++ .++
T Consensus        31 ~~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~  109 (458)
T d1ibrb_          31 NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPS-SAS  109 (458)
T ss_dssp             HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHH
T ss_pred             CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHH
Confidence            446778888888888777778888887777776655432111            1122334456777776665444 566


Q ss_pred             HHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCcc
Q 015496          196 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFE  273 (405)
Q Consensus       196 ~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~--~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~  273 (405)
                      .+++.++........   -.+.++.++..+.++.  ...+..++++++.++....+....-.....++.+...+.++..+
T Consensus       110 ~~~~~i~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~  186 (458)
T d1ibrb_         110 QCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS  186 (458)
T ss_dssp             HHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCC
T ss_pred             HHHHHHHHHhCCccc---CcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccC
Confidence            777776643111100   1267899999887644  56677888888887755433211111122456777777765456


Q ss_pred             HHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          274 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       274 ~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      ..++..++..+.++....    ............+.+.+..++..+|++++..++.++..++..
T Consensus       187 ~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~  246 (458)
T d1ibrb_         187 NNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL  246 (458)
T ss_dssp             HHHHHHHHHHHHHHTTTT----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh----hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            778999999999987531    110011122234677788888889999999999999998754

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0015  Score=68.35  Aligned_cols=182  Identities=14%  Similarity=0.128  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHccCCCCc-hhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhh
Q 015496          148 EDSQRALQELLILVEPIDN-ANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV  225 (405)
Q Consensus       148 e~k~~AL~~L~~Lve~iDn-A~~~~-~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL  225 (405)
                      +-...+++.+..+++.+.. -..++ ....++.++.++++.++++|..|..++|.++...+..=...+ ...++.|++-|
T Consensus       637 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L  715 (888)
T d1qbkb_         637 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNL  715 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHh
Confidence            3444566666655543321 12222 334567778889999999999999999998875433211111 13677888888


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          226 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       226 ~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                      .++..+++..|+|++|-|+........-++ ...++.|+.++++++.+..++.+++.+++.|+..     .|+...... 
T Consensus       716 ~~~~~~v~~~a~~~ig~ia~~~~~~~~py~-~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~-----~p~~~~~~l-  788 (888)
T d1qbkb_         716 NPEFISVCNNATWAIGEISIQMGIEMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV-----CPQEVAPML-  788 (888)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHTGGGGGGGS-HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH-----CHHHHGGGG-
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH-----CHHHHHhhH-
Confidence            887788999999999999887655433322 2467899999987766677899999999999853     232221111 


Q ss_pred             CCcHHHHHHhccC-CChHHHHHHHHHHHHHhcC
Q 015496          306 RFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       306 ~g~l~~Lv~LL~~-~D~~v~E~al~aL~~L~~~  337 (405)
                      ..+++.++..|.. .|.+-++.+...++.+...
T Consensus       789 ~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~  821 (888)
T d1qbkb_         789 QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV  821 (888)
T ss_dssp             GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHH
Confidence            2366777777665 4667788899999988864

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.002  Score=68.86  Aligned_cols=145  Identities=17%  Similarity=0.168  Sum_probs=105.9

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY  255 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~  255 (405)
                      |+.|+..+.++++.+|..++.+||.++.-+|.        ..+|.|..++.+++..+|..++.++..++.+.+...+.++
T Consensus       930 ~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l 1001 (1207)
T d1u6gc_         930 WALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLL 1001 (1207)
T ss_dssp             HHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence            56666667778899999999999999987773        4689999999999999999999999999988776655544


Q ss_pred             hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-----------------
Q 015496          256 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-----------------  318 (405)
Q Consensus       256 ~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~-----------------  318 (405)
                      .. -++.++..|+++  +..+|+.|+.++..++.++    +.-..+.+.  .++|.|.+....                 
T Consensus      1002 ~~-li~~ll~~l~d~--~~~vR~~al~~l~~~~~~~----p~li~~~l~--~llp~l~~~t~~~~e~ir~v~~gp~kh~~ 1072 (1207)
T d1u6gc_        1002 KN-CIGDFLKTLEDP--DLNVRRVALVTFNSAAHNK----PSLIRDLLD--TVLPHLYNETKVRKELIREVEMGPFKHTV 1072 (1207)
T ss_dssp             HH-HSTTTHHHHSSS--STHHHHHHHHHHHHHHHHC----GGGTGGGHH--HHHHHHHHTTSCCGGGEEEEEETTEEEEE
T ss_pred             HH-HHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhC----hHHHHHHHH--HHHHHHHHHhccchhheeeeecCCceeec
Confidence            32 344556677776  6779999999999999753    222223321  355555543221                 


Q ss_pred             -CChHHHHHHHHHHHHHhcC
Q 015496          319 -ADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       319 -~D~~v~E~al~aL~~L~~~  337 (405)
                       +-.++|..|..++..|...
T Consensus      1073 d~gl~~rk~a~e~~~~~l~~ 1092 (1207)
T d1u6gc_        1073 DDGLDIRKAAFECMYTLLDS 1092 (1207)
T ss_dssp             ETHHHHHHHHHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHHHHHHHHH
Confidence             2356888888888888844

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0035  Score=63.53  Aligned_cols=200  Identities=9%  Similarity=-0.025  Sum_probs=129.5

Q ss_pred             CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhH------------HHhcCCHHHHHHhcCCCCHHHHHHHH
Q 015496          128 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND------------LSKLGGLSVLVGQLNHPDTDIRKISA  195 (405)
Q Consensus       128 ~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~------------~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa  195 (405)
                      +.+..+..+++++.+.+.+.+-|..|.--|.+.+...+....            =.+...-..++..|.+++. ++..+|
T Consensus        32 ~~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a  110 (876)
T d1qgra_          32 NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSAS  110 (876)
T ss_dssp             HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHH
T ss_pred             ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHH
Confidence            345678888899988888888888888888777643321100            0111223467777877654 566789


Q ss_pred             HHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhhHHHHHh--cCcHHHHHHhhcCCC
Q 015496          196 WILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSS  271 (405)
Q Consensus       196 ~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~--~~v~~kAl~ALS~lir~~~~~~~~f~~--~gGi~~L~~lL~s~~  271 (405)
                      .+++.++...-...++   -+.+|.|++.+.+++  ..++..++.+|+.++....+.  .+..  ...++.++..+.++.
T Consensus       111 ~~i~~i~~~~~p~~~W---peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~--~~~~~~~~il~~i~~~l~~~~  185 (876)
T d1qgra_         111 QCVAGIACAEIPVNQW---PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE--QLQDKSNEILTAIIQGMRKEE  185 (876)
T ss_dssp             HHHHHHHHHHGGGTCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH--HHGGGHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHCCcccc---HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHcCcC
Confidence            9999988531000000   257899999987654  567888999999998654321  1211  234677788887654


Q ss_pred             ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015496          272 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       272 ~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~  337 (405)
                      .+..++..++.++.++...-    .+.........-+++.+...+..++.+++..++.++..+...
T Consensus       186 ~~~~v~~~a~~~l~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~  247 (876)
T d1qgra_         186 PSNNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL  247 (876)
T ss_dssp             SCHHHHHHHHHHHHHHGGGC----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            56778888888888876421    110000111123567777888889999999999999988764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.03  Score=56.00  Aligned_cols=157  Identities=10%  Similarity=0.045  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhc---CCHHHHHHhcC--CCCHHHHHHHHHHHHHHhcC
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL---GGLSVLVGQLN--HPDTDIRKISAWILGKASQN  204 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~---Ggi~~Lv~lL~--s~~~~Ir~~Aa~~Lg~~aqN  204 (405)
                      +++|...++.+.+.+ +...+..|+..|..+++..+......-.   ..++.++..+.  ..+..+|..|..+++++...
T Consensus       133 peli~~L~~~~~s~~-~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~  211 (861)
T d2bpta1         133 PELMKIMVDNTGAEQ-PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIF  211 (861)
T ss_dssp             HHHHHHHHHHTSTTS-CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            456666666665543 5567788899998888776543221111   12344444443  46789999999999999876


Q ss_pred             ChHhHHH-HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015496          205 NPLVQKQ-VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL  283 (405)
Q Consensus       205 N~~~Q~~-vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~l  283 (405)
                      -+..... ......++.|...+.++++.++..++.++..++..++.....++..-....+....++.  +..++..+.-+
T Consensus       212 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~--~~~v~~~~~~~  289 (861)
T d2bpta1         212 IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEF  289 (861)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHH
T ss_pred             HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHH
Confidence            5543321 11233567788889998999999999999999887766544443322333344444443  56677777777


Q ss_pred             HHHHhh
Q 015496          284 VGDLAK  289 (405)
Q Consensus       284 Ls~L~~  289 (405)
                      +..++.
T Consensus       290 l~~l~~  295 (861)
T d2bpta1         290 WSTICE  295 (861)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766643

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.049  Score=54.71  Aligned_cols=158  Identities=9%  Similarity=0.072  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHh-cCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCh
Q 015496          130 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP  206 (405)
Q Consensus       130 ~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~-~Ggi~~Lv~lL~s--~~~~Ir~~Aa~~Lg~~aqNN~  206 (405)
                      ++++...++.+.+++.+...+..++..|.++++.++....... ...++.++..+.+  ++.++|..|..++.+.....+
T Consensus       127 peli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  206 (876)
T d1qgra_         127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence            3678888888888877778888899999998876653221111 2357788888864  467899999999999887654


Q ss_pred             HhHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015496          207 LVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG  285 (405)
Q Consensus       207 ~~Q~~vl-e~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs  285 (405)
                      ....... ..-.++.+...+.++++.++..++.++..++..++.....+........+...+.+.  ...++..+...+.
T Consensus       207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~  284 (876)
T d1qgra_         207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWS  284 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHH
Confidence            3322211 112456677788888889999999999999998887766666656667777777765  4456777777666


Q ss_pred             HHhh
Q 015496          286 DLAK  289 (405)
Q Consensus       286 ~L~~  289 (405)
                      .++.
T Consensus       285 ~i~~  288 (876)
T d1qgra_         285 NVCD  288 (876)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.11  E-value=1  Score=41.54  Aligned_cols=152  Identities=15%  Similarity=0.107  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCC----CCHH
Q 015496          114 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTD  189 (405)
Q Consensus       114 ~~~L~~a~~~~~~~~d~~lmk~al~~L~~~~~t~e~k~~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s----~~~~  189 (405)
                      |+|+-+++-..|.+.   -++-..+.+.+...+..+....+..+......-  .      ..+..+..++++    .++.
T Consensus        74 r~~~lDal~~~GT~~---a~~~i~~~I~~~~ls~~ea~~~l~~l~~~~~Pt--~------~~l~~~~~l~~~~~~~~~~~  142 (336)
T d1lsha1          74 RRWILDAVPAMATSE---ALLFLKRTLASEQLTSAEATQIVASTLSNQQAT--R------ESLSYARELLNTSFIRNRPI  142 (336)
T ss_dssp             HHHHHHHHHHHCSHH---HHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCC--H------HHHHHHHHHHTCHHHHTCHH
T ss_pred             HHHHHHHHHHhCCHH---HHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCC--H------HHHHHHHHHHcCcccccchh
Confidence            355556665555432   234444555567777777777777776554322  1      123344555554    4788


Q ss_pred             HHHHHHHHHHHHhcC----ChHhHHHHHHcCcHHHHHH----hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc-CcH
Q 015496          190 IRKISAWILGKASQN----NPLVQKQVLELGALSKLMK----MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGD  260 (405)
Q Consensus       190 Ir~~Aa~~Lg~~aqN----N~~~Q~~vle~G~lp~Ll~----LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~-gGi  260 (405)
                      ++..+.-.+|+++.+    ++.+..     ..++.+..    ..+.++.+.+..++.||||+  +++.....+..+ .|-
T Consensus       143 l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~p~~i~~l~~~l~~~  215 (336)
T d1lsha1         143 LRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA--GQPNSIKKIQRFLPGQ  215 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCGGGHHHHHTTSTTS
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhcc--CCHhHHHHHHHHhccc
Confidence            888888888877743    222222     12233333    33344445555677777777  345555555432 110


Q ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015496          261 LMLQDILGNSSFEIRLHRKAVSLVGDLA  288 (405)
Q Consensus       261 ~~L~~lL~s~~~~~kl~~kA~~lLs~L~  288 (405)
                      .     -..+..+..+|.-|++++..+.
T Consensus       216 ~-----~~~~~~~~~vR~aAi~Alr~~~  238 (336)
T d1lsha1         216 G-----KSLDEYSTRVQAEAIMALRNIA  238 (336)
T ss_dssp             S-----SCCCCSCHHHHHHHHHTTTTGG
T ss_pred             c-----cccccccHHHHHHHHHHHHHhh
Confidence            0     0011124556666666666554

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.96  E-value=0.42  Score=44.46  Aligned_cols=156  Identities=15%  Similarity=0.080  Sum_probs=107.0

Q ss_pred             CCCCchhHHHhcCCHHHHHHhcC----C-------CCHHHHHHHHHHHHHHhcCChHhHHHHH-HcCcHHHHHHhhcCCC
Q 015496          162 EPIDNANDLSKLGGLSVLVGQLN----H-------PDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSF  229 (405)
Q Consensus       162 e~iDnA~~~~~~Ggi~~Lv~lL~----s-------~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vl-e~G~lp~Ll~LL~s~~  229 (405)
                      +++++-..| ..+|+..|+.+|.    .       .+..++..+..||..+..+ ....+.++ ..+++..|...+.++.
T Consensus        34 ~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L~s~~  111 (343)
T d2bnxa1          34 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAV  111 (343)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTCCTTS
T ss_pred             CCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHccCCCc
Confidence            466778888 4678888888773    1       1356888999999998854 55555555 4589999999999988


Q ss_pred             HHHHHHHHHHHHHHhcC--ChhhHHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015496          230 VEEAVKALYTVSSLIRN--NLAGQEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK  297 (405)
Q Consensus       230 ~~v~~kAl~ALS~lir~--~~~~~~~f~----------~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~  297 (405)
                      ..++..|+--|+.+|--  .+.+...++          +.+=+.+++..+++. ....++.-++.+|..|+.+     .+
T Consensus       112 ~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~ey~~a~m~lIN~li~~-----~~  185 (343)
T d2bnxa1         112 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITP-----AE  185 (343)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHTT-----CS
T ss_pred             hHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc-ccHHHHHHHHHHHHHHHcC-----cc
Confidence            88888888888777631  122222222          234578888888876 3567888999999999853     23


Q ss_pred             C------cchhHHhCCcHHHHHHhccCCChHHHH
Q 015496          298 V------EPPLFRDRFFLKSVVDLTASADLDLQE  325 (405)
Q Consensus       298 ~------~~~~l~~~g~l~~Lv~LL~~~D~~v~E  325 (405)
                      +      .+..|...|+.+.+-.+=..+++++..
T Consensus       186 dl~~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         186 ELDFRVHIRSELMRLGLHQVLQELREIENEDMKV  219 (343)
T ss_dssp             CHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHCChHHHHHHHHccCChHHHH
Confidence            2      344567788887766664444554443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.97  Score=41.68  Aligned_cols=130  Identities=15%  Similarity=0.116  Sum_probs=95.5

Q ss_pred             hHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC---cHHHHHHhhcCCCccHHHHHHHHH
Q 015496          206 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLMLQDILGNSSFEIRLHRKAVS  282 (405)
Q Consensus       206 ~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f~~~g---Gi~~L~~lL~s~~~~~kl~~kA~~  282 (405)
                      +.....++....+..+.+.+..++=++..-|...+-.+...|+.....|+..|   -+.....+|.++  +.-.||.++-
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~--NYVtrRqSlK  222 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE--NYVTKRQSLK  222 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS--SHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC--chHHHHHHHH
Confidence            44555566666677777777777767777888888887777787777887765   345566788886  5668999999


Q ss_pred             HHHHHhhchhccCCCCcch-hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChh
Q 015496          283 LVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT  340 (405)
Q Consensus       283 lLs~L~~~~~~~~~~~~~~-~l~~~g~l~~Lv~LL~~~D~~v~E~al~aL~~L~~~~~~  340 (405)
                      +|+.|....   .+..... .+.+..-++.++.+|++....+|-.|-....-.+..+..
T Consensus       223 LLgelLldr---~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnK  278 (330)
T d1upka_         223 LLGELLLDR---HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK  278 (330)
T ss_dssp             HHHHHHHSG---GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHhhh---hHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCC
Confidence            999998531   2222222 333457888999999999999999999999988887654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.83  E-value=0.3  Score=47.59  Aligned_cols=176  Identities=11%  Similarity=0.019  Sum_probs=111.2

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  254 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~-G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f  254 (405)
                      ++++..+|++++.-+...++.+++.+++..+......-.. .....+-.+..+++.....-++..++.+.|. ++.+..|
T Consensus       124 ~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~f  202 (477)
T d1ho8a_         124 EQLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVI  202 (477)
T ss_dssp             HHHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred             hHHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHH
Confidence            5677888888888888899999999988654433321111 1222333344556667777788889999886 6778888


Q ss_pred             HhcC--cHHHHHHhhcC----C-----------CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC--CcHHHHHHh
Q 015496          255 YVEA--GDLMLQDILGN----S-----------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR--FFLKSVVDL  315 (405)
Q Consensus       255 ~~~g--Gi~~L~~lL~s----~-----------~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~--g~l~~Lv~L  315 (405)
                      ....  .+..|+.+|+.    +           +....++-.+++++=-|..      +++....+.+.  +.++.++++
T Consensus       203 w~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF------~~~~~~~l~~~~~~~i~~l~~i  276 (477)
T d1ho8a_         203 WLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF------NPVFANELVQKYLSDFLDLLKL  276 (477)
T ss_dssp             HTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc------CHHHHHHHHHhhhHHHHHHHHH
Confidence            6543  35555555532    1           1234566677777766654      23444556555  458888888


Q ss_pred             ccC-CChHHHHHHHHHHHHHhcCChh-----hHHHHHhcCCchHHHHHHH
Q 015496          316 TAS-ADLDLQEKALAAIKNLLQLRTT-----EALVLKDFCGLDTALERLR  359 (405)
Q Consensus       316 L~~-~D~~v~E~al~aL~~L~~~~~~-----~~~~v~~~~Gl~~~L~~L~  359 (405)
                      ++. .-..+...++.++.+++.....     ....+. .+++++.+..|.
T Consensus       277 ~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v-~~~~l~~l~~L~  325 (477)
T d1ho8a_         277 VKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLL-LGNALPTVQSLS  325 (477)
T ss_dssp             HHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHH-HHCHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH-HcchhHHHHHHh
Confidence            854 4677888888899999865322     233344 567767776665

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.71  E-value=0.0036  Score=56.31  Aligned_cols=104  Identities=14%  Similarity=0.121  Sum_probs=47.2

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH-----Hhc-CChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHH-----HHHhc
Q 015496          177 SVLVGQLNHPDTDIRKISAWILGK-----ASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTV-----SSLIR  245 (405)
Q Consensus       177 ~~Lv~lL~s~~~~Ir~~Aa~~Lg~-----~aq-NN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~AL-----S~lir  245 (405)
                      ..|+.+++.+++.||..|+..|+.     +.. .++.++..+...=..+.|..++++++..||..+..++     .-++.
T Consensus        69 ~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~  148 (233)
T d1lrva_          69 EALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMR  148 (233)
T ss_dssp             GGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTT
T ss_pred             HHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhc
Confidence            344455555555555555544321     111 2333444443333345556666666666665554431     11222


Q ss_pred             C-ChhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015496          246 N-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS  282 (405)
Q Consensus       246 ~-~~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~  282 (405)
                      + ++..+..+...-|.+.|..+++++  +..+|..++.
T Consensus       149 D~d~~VR~~aA~~~~~~~L~~l~~D~--d~~VR~~aa~  184 (233)
T d1lrva_         149 DEDRQVRKLVAKRLPEESLGLMTQDP--EPEVRRIVAS  184 (233)
T ss_dssp             CSCHHHHHHHHHHSCGGGGGGSTTCS--SHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcCHHHHHHHccCC--CHHHHHHHHH
Confidence            2 122222333333455566666654  4556665553

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.66  E-value=0.036  Score=54.39  Aligned_cols=83  Identities=16%  Similarity=0.160  Sum_probs=69.5

Q ss_pred             CchhHHHhcC--CHHHHHHhcC----------CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCCHHH
Q 015496          165 DNANDLSKLG--GLSVLVGQLN----------HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEE  232 (405)
Q Consensus       165 DnA~~~~~~G--gi~~Lv~lL~----------s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v  232 (405)
                      +|+..|.+.+  .+..|+.+|+          +.++.+..-||.=||..++..|.-+..+-+.|+=..+++++.+++++|
T Consensus       381 EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~V  460 (477)
T d1ho8a_         381 DNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRV  460 (477)
T ss_dssp             HHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHH
T ss_pred             HHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHH
Confidence            3444444332  4678888885          357889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 015496          233 AVKALYTVSSLIRNN  247 (405)
Q Consensus       233 ~~kAl~ALS~lir~~  247 (405)
                      |..|+.|+.-+..++
T Consensus       461 r~eAL~avQklm~~n  475 (477)
T d1ho8a_         461 KYEALKATQAIIGYT  475 (477)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988764

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.44  E-value=2.4  Score=38.97  Aligned_cols=142  Identities=18%  Similarity=0.200  Sum_probs=97.3

Q ss_pred             HcCcHHHHHHhhc----CC----C---HHHHHHHHHHHHHHhcCChhhHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHH
Q 015496          214 ELGALSKLMKMVK----SS----F---VEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAV  281 (405)
Q Consensus       214 e~G~lp~Ll~LL~----s~----~---~~v~~kAl~ALS~lir~~~~~~~~f~~-~gGi~~L~~lL~s~~~~~kl~~kA~  281 (405)
                      ..+|+..|+.+|.    ..    .   ......++.+|-++.. +..+.+.++. .+++..|..+|.++  ..+++.-|+
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~--~~~tr~~a~  119 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAA  119 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhc-cHHHHHHHHcChHHHHHHHHccCCC--chHHHHHHH
Confidence            5677888887763    11    1   2345567888887765 5566665554 67899999999886  678899999


Q ss_pred             HHHHHHhhchh-ccCCCCcch------hHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCChhh------HHHHHh
Q 015496          282 SLVGDLAKCQL-ENMHKVEPP------LFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTTE------ALVLKD  347 (405)
Q Consensus       282 ~lLs~L~~~~~-~~~~~~~~~------~l~~~g~l~~Lv~LL~~~-D~~v~E~al~aL~~L~~~~~~~------~~~v~~  347 (405)
                      -+|+.+|.... +...+...+      ...+.+-...+++.|... +.+++..++..+-.|....++-      |..+. 
T Consensus       120 elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~-  198 (343)
T d2bnxa1         120 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-  198 (343)
T ss_dssp             HHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH-
T ss_pred             HHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHH-
Confidence            99999995310 000111111      223345556778777765 7899999999888998876552      45666 


Q ss_pred             cCCchHHHHHHH
Q 015496          348 FCGLDTALERLR  359 (405)
Q Consensus       348 ~~Gl~~~L~~L~  359 (405)
                      .+|+.+.+.+|+
T Consensus       199 ~~Gl~~il~~l~  210 (343)
T d2bnxa1         199 RLGLHQVLQELR  210 (343)
T ss_dssp             HTTHHHHHHHHT
T ss_pred             HCChHHHHHHHH
Confidence            899999999987

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=2.4  Score=38.89  Aligned_cols=182  Identities=11%  Similarity=0.072  Sum_probs=128.2

Q ss_pred             HHHHHHHHccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHhHHHHHHcC---cHHHHHHhhcCC
Q 015496          152 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKMVKSS  228 (405)
Q Consensus       152 ~AL~~L~~Lve~iDnA~~~~~~Ggi~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G---~lp~Ll~LL~s~  228 (405)
                      .+-.-|++++..-.-|.-+.....+..+..+...++=+|-..|...+-.+-..++..-..++..+   .+..+-+||.++
T Consensus       133 ~~G~mLREcik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~  212 (330)
T d1upka_         133 NCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE  212 (330)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS
T ss_pred             hhhHHHHHHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence            33344555554444566666667788888899999999999999999999999888777777765   566778899988


Q ss_pred             CHHHHHHHHHHHHHHh--cCChhhHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015496          229 FVEEAVKALYTVSSLI--RNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD  305 (405)
Q Consensus       229 ~~~v~~kAl~ALS~li--r~~~~~~~~f~~-~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~  305 (405)
                      +=-+|.+++--||.++  |.|......++. ..-+..++.+|+++  +-.+|..|...+.=++.++  +-++.....+..
T Consensus       213 NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~--sk~Iq~EAFhVFKvFVANp--nKp~~I~~IL~~  288 (330)
T d1upka_         213 NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK--SRNIQFEAFHVFKVFVANP--NKTQPILDILLK  288 (330)
T ss_dssp             SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHCS--SCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc--hhhHHHHhhhHhhhhhcCC--CCCHHHHHHHHH
Confidence            8778999999999998  545555555554 34678899999987  4568889998888887642  233445555554


Q ss_pred             C--CcHHHHHHhccC--CChHHHHHHHHHHHHHhcC
Q 015496          306 R--FFLKSVVDLTAS--ADLDLQEKALAAIKNLLQL  337 (405)
Q Consensus       306 ~--g~l~~Lv~LL~~--~D~~v~E~al~aL~~L~~~  337 (405)
                      +  .++..|-++...  +|..+.+.=...+..+...
T Consensus       289 Nr~kLl~fl~~f~~d~~~DeqF~~EK~~lI~~I~~L  324 (330)
T d1upka_         289 NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL  324 (330)
T ss_dssp             THHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHhCCCCCCchhhHHHHHHHHHHHHHhC
Confidence            3  566666666543  3666655444445555443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.92  E-value=0.034  Score=49.63  Aligned_cols=127  Identities=13%  Similarity=0.089  Sum_probs=62.0

Q ss_pred             HhcCCCCHHHHHHHHHH-----HHHH-hcCChHhHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 015496          181 GQLNHPDTDIRKISAWI-----LGKA-SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF  254 (405)
Q Consensus       181 ~lL~s~~~~Ir~~Aa~~-----Lg~~-aqNN~~~Q~~vle~G~lp~Ll~LL~s~~~~v~~kAl~ALS~lir~~~~~~~~f  254 (405)
                      .+|.+++.++|..|+.-     |..+ .-.++.++..+.+.=+.+.|..++.+++..||..+..++              
T Consensus        49 ~~l~~p~~e~Ra~Aa~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l--------------  114 (233)
T d1lrva_          49 QYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRL--------------  114 (233)
T ss_dssp             GGTTCSSHHHHHHHHTTSCGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHS--------------
T ss_pred             HHhcCCcHHHHHHHHhcCCHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhcc--------------
Confidence            47889999999888752     1122 223555555555443334455555555555555444432              


Q ss_pred             HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh----ccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015496          255 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL----ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA  330 (405)
Q Consensus       255 ~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~----~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~v~E~al~a  330 (405)
                          ..+.|..+++++  +..+|..++..   +....+    ..++++.+..+...--.+.|..+++.++..++..++..
T Consensus       115 ----~~~~L~~Ll~D~--d~~VR~~aa~~---~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         115 ----PLEQLEQMAADR--DYLVRAYVVQR---IPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             ----CTGGGGGGTTCS--SHHHHHHHHHH---SCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             ----CHHHHHHHhcCC--CHHHHHHHHhc---cchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence                123455555554  44455444321   111000    01222222233222223445556666677777766654

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.80  E-value=1  Score=36.59  Aligned_cols=73  Identities=15%  Similarity=0.089  Sum_probs=59.1

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCh
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNNL  248 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqN-N~~~Q~~vle~G~lp~Ll~LL~s------~~~~v~~kAl~ALS~lir~~~  248 (405)
                      +..|-.=|.+.++.++..|..+|-.++.| .+.++..|...+.+..|++++..      .+..|+.+.+.-|-.-...+|
T Consensus        47 ~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp  126 (145)
T d1ujka_          47 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  126 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            33455556889999999999999999999 59999999999999999999963      346788888887776555543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.46  E-value=1.8  Score=43.69  Aligned_cols=136  Identities=11%  Similarity=0.095  Sum_probs=95.6

Q ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHhHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCC-----
Q 015496          176 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNN-----  247 (405)
Q Consensus       176 i~~Lv~lL~-s~~~~Ir~~Aa~~Lg~~aqNN~~~Q~~vle~G~lp~Ll~LL~s~~--~~v~~kAl~ALS~lir~~-----  247 (405)
                      ++.+..+|. +.+++.|.+|=.-|-.+- ++|         |.+..|++++.+++  ..+|..|+-.+-|.++.+     
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~-~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~   73 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLE-TQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN   73 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHH-TST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHH-cCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            456677764 678888988888887764 445         67788888887654  568888888888877642     


Q ss_pred             -----hhhHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChH
Q 015496          248 -----LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD  322 (405)
Q Consensus       248 -----~~~~~~f~~~gGi~~L~~lL~s~~~~~kl~~kA~~lLs~L~~~~~~~~~~~~~~~l~~~g~l~~Lv~LL~~~D~~  322 (405)
                           ++..+..++    ..|+.+|.++  +..+|...+.+++.+++..    -|+.-     .++++.+++++.++|..
T Consensus        74 ~~~~i~~e~k~~Ik----~~ll~~l~~~--~~~ir~~l~~~i~~I~~~d----~p~~W-----p~ll~~l~~~l~s~~~~  138 (959)
T d1wa5c_          74 GNHLLPANNVELIK----KEIVPLMISL--PNNLQVQIGEAISSIADSD----FPDRW-----PTLLSDLASRLSNDDMV  138 (959)
T ss_dssp             SCBSSCHHHHHHHH----HHHHHHHHHS--CHHHHHHHHHHHHHHHHHH----STTTC-----TTHHHHHHTTCCSSCTT
T ss_pred             ccCCCCHHHHHHHH----HHHHHHHhCC--cHHHHHHHHHHHHHHHHHh----Ccccc-----HHHHHHHHHHhCCCCHH
Confidence                 122233333    3444445443  5678889999999998641    12211     25788899999999999


Q ss_pred             HHHHHHHHHHHHhc
Q 015496          323 LQEKALAAIKNLLQ  336 (405)
Q Consensus       323 v~E~al~aL~~L~~  336 (405)
                      .+..++.+|..+..
T Consensus       139 ~~~~~L~~l~~i~k  152 (959)
T d1wa5c_         139 TNKGVLTVAHSIFK  152 (959)
T ss_dssp             HHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999874

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.74  E-value=1.1  Score=36.19  Aligned_cols=71  Identities=11%  Similarity=0.079  Sum_probs=57.3

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015496          177 SVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN  247 (405)
Q Consensus       177 ~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s------~~~~v~~kAl~ALS~lir~~  247 (405)
                      ..|-+=|+++++.++..|..+|-.++.|- +.++..|.....+..|++++..      .+..|+.+++..|-+-...+
T Consensus        41 ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          41 WLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            33555568899999999999999999995 8899999888999999999973      34678888887776655544

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.34  E-value=1.3  Score=35.76  Aligned_cols=71  Identities=15%  Similarity=0.176  Sum_probs=55.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcC
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRN  246 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s~-~~~v~~kAl~ALS~lir~  246 (405)
                      +..|.+-|+++++.++..|..+|-.++.|- +..+..+...+.+..|.+++++. +..|+.+++..|-.-...
T Consensus        44 ~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  116 (145)
T d1dvpa1          44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA  116 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            344556678899999999999999999995 66777787788899999998764 467888887766665443

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.76  E-value=2.1  Score=34.84  Aligned_cols=72  Identities=15%  Similarity=0.117  Sum_probs=57.3

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHhHHHHHHcCcHHHHHHhhcCC------CHHHHHHHHHHHHHHhcCC
Q 015496          176 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS------FVEEAVKALYTVSSLIRNN  247 (405)
Q Consensus       176 i~~Lv~lL~s~~~~Ir~~Aa~~Lg~~aqNN-~~~Q~~vle~G~lp~Ll~LL~s~------~~~v~~kAl~ALS~lir~~  247 (405)
                      +..|-.=|.+.++.++..|..+|-.+++|- +.++..|.....+..|++++...      +..|+.+.+.-|-+-...+
T Consensus        41 ~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          41 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence            444555567899999999999999999994 77888888888999999999742      4578888888777665544